Query 012308
Match_columns 466
No_of_seqs 292 out of 2063
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 01:16:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 1.6E-72 3.4E-77 576.5 46.0 360 39-432 49-425 (443)
2 PLN02155 polygalacturonase 100.0 5.8E-72 1.3E-76 563.6 45.3 379 1-431 1-393 (394)
3 PLN02188 polygalacturonase/gly 100.0 7E-71 1.5E-75 558.2 40.7 355 36-430 30-404 (404)
4 PLN02218 polygalacturonase ADP 100.0 5E-70 1.1E-74 555.5 44.2 354 38-430 63-431 (431)
5 PLN03003 Probable polygalactur 100.0 3.6E-69 7.8E-74 547.0 44.0 357 39-434 20-393 (456)
6 PLN03010 polygalacturonase 100.0 1.9E-68 4E-73 539.1 45.1 346 39-431 43-404 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 2E-54 4.4E-59 431.8 31.5 309 74-418 3-321 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 6E-47 1.3E-51 389.4 30.6 302 39-347 79-404 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 100.0 1.4E-28 3E-33 245.7 23.4 176 38-257 33-209 (455)
10 PLN02793 Probable polygalactur 99.9 2E-20 4.3E-25 192.5 30.0 249 180-460 135-438 (443)
11 PLN03003 Probable polygalactur 99.9 1.9E-20 4.1E-25 191.2 29.3 241 180-452 105-396 (456)
12 PF12708 Pectate_lyase_3: Pect 99.9 1.2E-21 2.6E-26 185.4 17.4 212 42-316 1-224 (225)
13 PLN02218 polygalacturonase ADP 99.9 8.4E-21 1.8E-25 194.3 23.9 195 181-407 149-383 (431)
14 PLN03010 polygalacturonase 99.9 4.6E-20 1E-24 187.2 28.7 194 181-406 132-348 (409)
15 PLN02155 polygalacturonase 99.9 1.6E-19 3.4E-24 182.9 26.2 196 181-407 108-338 (394)
16 PLN02188 polygalacturonase/gly 99.8 1.8E-19 3.8E-24 183.4 24.6 197 181-407 115-349 (404)
17 PF00295 Glyco_hydro_28: Glyco 99.8 8.8E-20 1.9E-24 182.5 20.9 198 179-408 51-284 (326)
18 PF03718 Glyco_hydro_49: Glyco 99.8 7.4E-18 1.6E-22 170.3 24.2 270 77-406 232-553 (582)
19 TIGR03805 beta_helix_1 paralle 99.7 1E-14 2.2E-19 144.8 26.2 189 62-312 1-203 (314)
20 COG5434 PGU1 Endopygalactoruna 99.5 6E-13 1.3E-17 138.3 15.2 213 137-381 165-399 (542)
21 TIGR03805 beta_helix_1 paralle 99.2 3.8E-10 8.3E-15 112.2 18.5 164 146-341 31-203 (314)
22 TIGR03808 RR_plus_rpt_1 twin-a 98.9 9.9E-08 2.1E-12 96.7 17.1 144 180-347 107-290 (455)
23 PF13229 Beta_helix: Right han 98.7 8.1E-08 1.8E-12 85.0 10.6 141 182-348 3-145 (158)
24 PF12541 DUF3737: Protein of u 98.7 1.1E-07 2.4E-12 89.1 10.4 126 183-345 93-229 (277)
25 COG3420 NosD Nitrous oxidase a 98.6 4.5E-06 9.9E-11 80.8 19.2 158 75-283 32-192 (408)
26 PF12541 DUF3737: Protein of u 98.6 4.5E-07 9.9E-12 85.1 12.0 103 182-320 131-233 (277)
27 PF07602 DUF1565: Protein of u 98.6 2.5E-06 5.4E-11 81.1 16.5 170 60-319 16-195 (246)
28 PLN02480 Probable pectinestera 98.6 2E-05 4.3E-10 78.8 22.8 40 58-102 59-104 (343)
29 PF13229 Beta_helix: Right han 98.5 1E-06 2.3E-11 77.8 11.5 152 142-337 4-157 (158)
30 PRK10123 wcaM putative colanic 98.5 2.5E-05 5.4E-10 74.2 19.3 226 39-338 31-282 (464)
31 PF05048 NosD: Periplasmic cop 98.4 3.7E-06 8E-11 80.4 13.6 135 181-346 15-150 (236)
32 PF03718 Glyco_hydro_49: Glyco 98.4 0.00029 6.4E-09 72.7 26.8 263 75-380 254-554 (582)
33 PF05048 NosD: Periplasmic cop 98.3 1.4E-05 3E-10 76.4 15.4 115 181-319 37-152 (236)
34 COG3866 PelB Pectate lyase [Ca 98.3 4.8E-05 1E-09 72.9 17.8 73 229-313 144-230 (345)
35 PF14592 Chondroitinas_B: Chon 98.2 0.00031 6.7E-09 71.6 21.4 26 58-88 3-28 (425)
36 COG3866 PelB Pectate lyase [Ca 98.2 6.1E-05 1.3E-09 72.2 15.3 41 182-222 119-165 (345)
37 PLN02682 pectinesterase family 98.2 0.0011 2.3E-08 66.8 25.0 44 58-103 81-127 (369)
38 smart00656 Amb_all Amb_all dom 98.2 4.6E-05 9.9E-10 70.4 13.7 97 204-312 33-144 (190)
39 PLN02176 putative pectinestera 98.1 0.0015 3.2E-08 65.3 23.6 43 59-103 51-96 (340)
40 smart00656 Amb_all Amb_all dom 98.0 0.00054 1.2E-08 63.3 16.5 129 181-319 33-174 (190)
41 PLN02773 pectinesterase 97.9 0.0039 8.4E-08 61.8 23.4 133 183-340 97-239 (317)
42 PF12708 Pectate_lyase_3: Pect 97.8 0.0009 2E-08 62.8 16.1 124 190-345 94-224 (225)
43 PRK10531 acyl-CoA thioesterase 97.8 0.0057 1.2E-07 62.6 22.3 51 51-103 87-140 (422)
44 PLN02497 probable pectinestera 97.8 0.0072 1.6E-07 60.2 22.4 43 59-103 44-89 (331)
45 PLN02634 probable pectinestera 97.7 0.014 3E-07 58.7 23.0 44 58-103 67-113 (359)
46 PF00544 Pec_lyase_C: Pectate 97.7 0.00024 5.2E-09 66.2 9.8 96 204-312 38-158 (200)
47 PLN02665 pectinesterase family 97.7 0.024 5.1E-07 57.4 24.5 134 182-340 148-297 (366)
48 PLN02432 putative pectinestera 97.5 0.017 3.7E-07 56.7 20.7 42 59-102 23-67 (293)
49 PLN02671 pectinesterase 97.5 0.016 3.4E-07 58.4 20.4 44 58-103 70-116 (359)
50 PLN02304 probable pectinestera 97.5 0.019 4.2E-07 58.0 21.1 43 59-103 87-132 (379)
51 PLN02170 probable pectinestera 97.5 0.019 4.1E-07 60.6 21.1 134 182-340 307-451 (529)
52 COG3420 NosD Nitrous oxidase a 97.3 0.016 3.5E-07 56.7 16.2 144 177-348 148-291 (408)
53 PLN02708 Probable pectinestera 97.2 0.061 1.3E-06 57.6 21.7 80 183-282 325-409 (553)
54 PF01696 Adeno_E1B_55K: Adenov 97.2 0.064 1.4E-06 54.2 20.5 53 44-111 45-99 (386)
55 PF01095 Pectinesterase: Pecti 97.2 0.0083 1.8E-07 59.3 14.1 133 185-341 84-236 (298)
56 PLN02916 pectinesterase family 97.2 0.062 1.3E-06 56.5 20.9 111 182-312 271-392 (502)
57 PLN02201 probable pectinestera 97.2 0.082 1.8E-06 56.0 21.7 138 183-340 288-441 (520)
58 PF00544 Pec_lyase_C: Pectate 97.1 0.0051 1.1E-07 57.3 11.1 126 185-320 43-189 (200)
59 PLN02713 Probable pectinestera 97.1 0.055 1.2E-06 58.0 20.1 137 184-340 336-488 (566)
60 PLN03043 Probable pectinestera 97.1 0.052 1.1E-06 57.9 19.8 111 182-312 307-428 (538)
61 PLN02506 putative pectinestera 97.1 0.07 1.5E-06 56.9 20.5 134 182-340 313-458 (537)
62 PF12218 End_N_terminal: N ter 97.1 0.00057 1.2E-08 49.5 3.2 38 50-92 1-38 (67)
63 PLN02995 Probable pectinestera 97.1 0.075 1.6E-06 56.7 20.4 136 185-340 309-460 (539)
64 PLN02488 probable pectinestera 97.0 0.089 1.9E-06 55.2 20.3 109 185-313 281-400 (509)
65 PLN02416 probable pectinestera 97.0 0.066 1.4E-06 57.1 19.8 137 184-340 313-465 (541)
66 PLN02933 Probable pectinestera 97.0 0.16 3.6E-06 53.8 22.0 140 182-341 299-454 (530)
67 PLN02314 pectinesterase 97.0 0.11 2.3E-06 56.2 21.1 137 184-341 361-509 (586)
68 PLN02468 putative pectinestera 97.0 0.11 2.3E-06 55.9 20.9 137 184-340 341-489 (565)
69 PLN02745 Putative pectinestera 96.9 0.19 4E-06 54.3 21.8 138 183-340 367-520 (596)
70 PLN02301 pectinesterase/pectin 96.9 0.11 2.3E-06 55.5 19.5 111 182-312 317-438 (548)
71 PLN02217 probable pectinestera 96.7 0.23 5E-06 54.1 20.9 138 184-341 333-486 (670)
72 PLN02197 pectinesterase 96.7 0.21 4.6E-06 53.7 20.3 138 183-340 359-513 (588)
73 PLN02484 probable pectinestera 96.7 0.4 8.7E-06 51.8 22.3 138 183-340 355-508 (587)
74 PLN02313 Pectinesterase/pectin 96.6 0.22 4.9E-06 53.7 19.8 110 183-312 357-477 (587)
75 PLN02990 Probable pectinestera 96.6 0.29 6.3E-06 52.6 20.5 137 184-340 343-495 (572)
76 PRK10123 wcaM putative colanic 96.4 0.16 3.6E-06 48.7 15.3 146 188-341 151-313 (464)
77 COG4677 PemB Pectin methyleste 94.4 1.4 3E-05 43.3 14.2 46 57-103 92-140 (405)
78 PLN02682 pectinesterase family 94.1 3.2 6.9E-05 42.2 16.7 19 182-200 157-175 (369)
79 PF07602 DUF1565: Protein of u 94.1 0.34 7.5E-06 46.3 9.3 73 272-348 122-195 (246)
80 PF03211 Pectate_lyase: Pectat 93.7 1.8 3.8E-05 40.5 13.0 42 212-259 62-104 (215)
81 TIGR03804 para_beta_helix para 92.8 0.1 2.3E-06 35.6 2.6 28 231-258 1-28 (44)
82 PF01696 Adeno_E1B_55K: Adenov 91.4 18 0.0004 36.9 20.9 38 273-316 167-204 (386)
83 PF09251 PhageP22-tail: Salmon 91.1 13 0.00028 38.1 16.0 65 271-337 263-346 (549)
84 PF03211 Pectate_lyase: Pectat 90.3 15 0.00032 34.5 14.8 129 187-335 60-194 (215)
85 TIGR03804 para_beta_helix para 89.4 0.37 7.9E-06 32.9 2.7 40 205-249 2-41 (44)
86 PLN02773 pectinesterase 89.2 7 0.00015 39.0 12.5 113 206-341 97-212 (317)
87 PF08480 Disaggr_assoc: Disagg 87.2 9.2 0.0002 34.7 10.6 123 188-343 2-145 (198)
88 PF14592 Chondroitinas_B: Chon 86.5 2.6 5.6E-05 43.5 7.8 135 189-341 200-363 (425)
89 PF08480 Disaggr_assoc: Disagg 84.0 8 0.00017 35.1 8.7 15 298-312 62-76 (198)
90 KOG1777 Putative Zn-finger pro 83.6 20 0.00043 37.0 12.2 29 75-103 46-74 (625)
91 PLN02634 probable pectinestera 83.3 46 0.001 33.8 14.9 15 186-200 147-161 (359)
92 PLN02480 Probable pectinestera 83.1 23 0.0005 35.8 12.7 16 185-200 129-144 (343)
93 PLN02432 putative pectinestera 78.5 73 0.0016 31.5 15.6 16 185-200 91-106 (293)
94 PLN02665 pectinesterase family 78.5 44 0.00095 34.1 13.0 139 206-379 149-297 (366)
95 PLN02698 Probable pectinestera 77.9 59 0.0013 34.7 14.3 61 186-252 268-333 (497)
96 PLN02708 Probable pectinestera 77.3 37 0.00081 36.7 12.7 113 207-341 326-449 (553)
97 PF01095 Pectinesterase: Pecti 75.7 32 0.00069 34.1 11.0 82 208-311 84-167 (298)
98 PLN02176 putative pectinestera 75.0 98 0.0021 31.3 16.1 15 186-200 120-134 (340)
99 PLN02506 putative pectinestera 72.0 75 0.0016 34.2 13.3 114 205-340 313-433 (537)
100 PLN02698 Probable pectinestera 71.2 62 0.0013 34.5 12.4 115 205-341 264-385 (497)
101 PLN02170 probable pectinestera 70.4 1E+02 0.0023 33.0 13.8 115 205-341 307-427 (529)
102 PRK10531 acyl-CoA thioesterase 69.7 88 0.0019 32.5 12.7 20 237-256 237-256 (422)
103 PLN02916 pectinesterase family 69.4 82 0.0018 33.6 12.7 114 206-341 272-392 (502)
104 PLN02713 Probable pectinestera 68.9 64 0.0014 35.0 12.1 113 207-341 336-455 (566)
105 PLN02301 pectinesterase/pectin 68.8 67 0.0015 34.7 12.1 114 206-341 318-438 (548)
106 PLN02497 probable pectinestera 68.7 1.4E+02 0.0029 30.2 15.3 16 185-200 112-127 (331)
107 PLN02933 Probable pectinestera 67.4 75 0.0016 34.1 12.0 113 206-340 300-419 (530)
108 PLN02745 Putative pectinestera 65.6 1E+02 0.0022 33.7 12.9 113 207-341 368-487 (596)
109 PLN02201 probable pectinestera 65.1 1.3E+02 0.0027 32.4 13.2 113 206-340 288-407 (520)
110 PLN02217 probable pectinestera 64.7 63 0.0014 35.7 11.1 113 207-341 333-452 (670)
111 PLN02488 probable pectinestera 64.4 1.1E+02 0.0024 32.5 12.5 113 207-341 280-399 (509)
112 PLN02671 pectinesterase 64.2 86 0.0019 31.9 11.2 18 183-200 149-166 (359)
113 PLN02468 putative pectinestera 63.9 84 0.0018 34.1 11.8 113 207-341 341-460 (565)
114 PLN02995 Probable pectinestera 63.1 70 0.0015 34.5 11.0 83 208-311 309-392 (539)
115 PLN02304 probable pectinestera 61.6 1.9E+02 0.0041 29.7 13.2 15 186-200 160-174 (379)
116 PLN02484 probable pectinestera 60.3 1.1E+02 0.0024 33.4 11.9 113 206-340 355-474 (587)
117 PLN02314 pectinesterase 56.8 1.3E+02 0.0029 32.8 11.9 112 207-341 361-480 (586)
118 PLN02416 probable pectinestera 54.9 74 0.0016 34.3 9.4 112 207-340 313-431 (541)
119 PLN03043 Probable pectinestera 53.0 94 0.002 33.5 9.9 114 206-341 308-428 (538)
120 PLN02313 Pectinesterase/pectin 51.3 91 0.002 34.0 9.5 114 207-341 358-477 (587)
121 PLN02197 pectinesterase 51.0 93 0.002 33.9 9.5 113 207-341 360-480 (588)
122 PLN02990 Probable pectinestera 48.3 1E+02 0.0022 33.6 9.2 113 207-341 343-462 (572)
123 smart00710 PbH1 Parallel beta- 47.9 17 0.00038 20.5 2.1 19 301-319 3-22 (26)
124 PF07172 GRP: Glycine rich pro 40.5 15 0.00032 29.8 1.2 10 4-13 3-12 (95)
125 PRK09752 adhesin; Provisional 40.5 7E+02 0.015 29.7 15.3 37 301-337 223-262 (1250)
126 smart00722 CASH Domain present 37.0 1.7E+02 0.0037 24.4 7.5 13 187-199 44-56 (146)
127 smart00722 CASH Domain present 33.4 1.2E+02 0.0026 25.4 5.9 68 185-255 73-144 (146)
128 COG5567 Predicted small peripl 33.0 67 0.0014 23.1 3.3 23 33-55 35-57 (58)
129 PF11429 Colicin_D: Colicin D; 30.3 83 0.0018 25.3 3.9 37 46-88 10-47 (92)
130 PF09251 PhageP22-tail: Salmon 29.1 6.8E+02 0.015 26.1 13.7 24 299-322 263-287 (549)
131 PRK15346 outer membrane secret 24.7 1.2E+02 0.0026 32.4 5.2 21 62-85 40-60 (499)
132 KOG1777 Putative Zn-finger pro 21.2 2.1E+02 0.0046 29.8 5.7 22 237-258 426-447 (625)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.6e-72 Score=576.45 Aligned_cols=360 Identities=26% Similarity=0.445 Sum_probs=317.0
Q ss_pred CCeeEEEeecCccCCCcchhHHHHHHHHHH-hhccccCCCcEEEecCC-cceEeeEEe----ecCceEEecCCcEEecCC
Q 012308 39 RPHSVSITEFGAVGDGVTLNTKAFQNAIFY-LNSFADKGGAKLFVPAG-QWLTGSFDL----ISHLTLWLDKDAVILGST 112 (466)
Q Consensus 39 ~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~~-a~~~~~~gg~tV~iP~G-~Y~~~~l~l----~s~~tL~l~~ga~i~~~~ 112 (466)
.++++||+||||+|||++|||+|||+||++ |+ ..+|++|+||+| +|++++|.| +|+++|+++ ++|+++.
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~---~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~ 123 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACS---SKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPK 123 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhc---cCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccC
Confidence 457999999999999999999999999994 53 568899999999 599999999 899999997 8999999
Q ss_pred CCCCCCCCCCCCCCCcccccCCCcceeeEEEecceeeEEeCcceeeeCCcchhhhhhcC---CCCCCCCCeeEEEEeecc
Q 012308 113 NSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRN---GTLDYTRPHLVELMNSTG 189 (466)
Q Consensus 113 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~G~~~w~~~~~---~~~~~~rp~~i~~~~~~n 189 (466)
++++|+.. ..+.||++.+.+||+|+|. |+|||+|+.||+.... ......||++|.|.+|+|
T Consensus 124 d~~~w~~~---------------~~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~n 187 (443)
T PLN02793 124 DPDVWKGL---------------NPRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKD 187 (443)
T ss_pred ChHHccCC---------------CCceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEeecc
Confidence 99888632 1246899999999999997 9999999999975321 112235899999999999
Q ss_pred eEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCC
Q 012308 190 VIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGR 269 (466)
Q Consensus 190 v~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~ 269 (466)
++|++++++|+|+|++++..|+||+|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|++
T Consensus 188 v~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~---------- 257 (443)
T PLN02793 188 LRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN---------- 257 (443)
T ss_pred EEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC----------
Confidence 9999999999999999999999999999999999889999999999999999999999999999999986
Q ss_pred CceeEEEEEEEEecCCCCeEEEceec----CCcEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEEEEEceEEcCcceeE
Q 012308 270 PSTKITIHGLIGETKLGAGIAIGSEM----SGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAI 345 (466)
Q Consensus 270 ~s~nI~I~n~~~~~~~~~gi~Igs~~----~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI~~~ni~i~~~~~~i 345 (466)
++||+|+||+|.. +|||+|||+. .++++||+|+||+|.++.+|++||+|+|++|.|+||+|+||+|+++.+||
T Consensus 258 -s~nI~I~n~~c~~--GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI 334 (443)
T PLN02793 258 -SSRIKIRNIACGP--GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPI 334 (443)
T ss_pred -cCCEEEEEeEEeC--CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceE
Confidence 8999999999975 6999999973 46799999999999999999999999998999999999999999999999
Q ss_pred EEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeee-ceeEEEEccCCCCeeeEEEEeEEEEcC--CCCCeEEeeeecccC
Q 012308 346 IFTGHFGEHPDDSYDPSALPIIERITIKNVIGENV-KMAGQLEGIEGDTFRYICLSNIKLNGV--SESPWNCSYIQGYSD 422 (466)
Q Consensus 346 ~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~-~~~~~i~g~~~~~~~~I~~~Ni~i~~~--~~~~~~c~~v~g~~~ 422 (466)
.|++.|+.....+..+...+.|+||+|+||+++.. ..++.+.|+++.||+||+|+||+++.. +...+.|+|++|...
T Consensus 335 ~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~ 414 (443)
T PLN02793 335 IIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSS 414 (443)
T ss_pred EEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeEC
Confidence 99999965322222233346899999999999985 457899999999999999999999873 234689999999886
Q ss_pred c-cCCCCCCCc
Q 012308 423 L-VFPETCDPL 432 (466)
Q Consensus 423 ~-~~p~~c~~~ 432 (466)
. +.|.||.+.
T Consensus 415 ~~~~p~~C~~~ 425 (443)
T PLN02793 415 GQVYPPPCFSD 425 (443)
T ss_pred CeEcCCccccC
Confidence 5 778889754
No 2
>PLN02155 polygalacturonase
Probab=100.00 E-value=5.8e-72 Score=563.63 Aligned_cols=379 Identities=26% Similarity=0.356 Sum_probs=321.9
Q ss_pred CccchhHHHHHHHHHHhhcccccccCCCcccCCCcCCCCCeeEEEeecCccCCCcchhHHHHHHHHH-HhhccccCCCcE
Q 012308 1 MRRSFTLVDVFLVLALFSEAPWAVAGSSQCSQSNLEVFRPHSVSITEFGAVGDGVTLNTKAFQNAIF-YLNSFADKGGAK 79 (466)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~-~a~~~~~~gg~t 79 (466)
|.+....++|++.++..+.+.. .++.++||+||||+|||+||||+|||+||+ +|+ +++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~---~~gGg~ 62 (394)
T PLN02155 1 MTKSAITFPLLFTLLTFIDVSS---------------SASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACG---SASSAT 62 (394)
T ss_pred CccceeehhHHHHHHHHhhccc---------------cCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcc---cCCCeE
Confidence 6777666665554444333311 245689999999999999999999999996 664 578999
Q ss_pred EEecCCcceEeeEEe----ecCceEEecCCcEEecCCCCCCCCCCCCCCCCCcccccCCCcceeeEEEecceeeEEeCcc
Q 012308 80 LFVPAGQWLTGSFDL----ISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDN 155 (466)
Q Consensus 80 V~iP~G~Y~~~~l~l----~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~nv~I~G~~ 155 (466)
|+||+|+|++++|.| ||+++|+|+ | +|+++.++..|.. . ..|+.+.+.+|+.|+|
T Consensus 63 v~vP~G~yl~g~i~l~gpcksnv~l~l~-G-~l~~~~d~~~~~~---------------~--~~wi~~~~~~~i~i~G-- 121 (394)
T PLN02155 63 VVVPTGTFLLKVITFGGPCKSKITFQVA-G-TVVAPEDYRTFGN---------------S--GYWILFNKVNRFSLVG-- 121 (394)
T ss_pred EEECCCcEEEEEEEEcccCCCCceEEEe-e-EEECccccccccc---------------c--ceeEEEECcCCCEEEc--
Confidence 999999999999999 899999997 4 7777766544421 0 2368899999999999
Q ss_pred eeeeCCcchhhhhhcCCCCCCCCCeeEEEEeecceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCC
Q 012308 156 GTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPD 235 (466)
Q Consensus 156 G~IdG~G~~~w~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~ 235 (466)
|+|||||+.||+....+.....+|.++.|.+|+|++|++++++|||.|++++..|+||+|++++|.++.+++|+||||+.
T Consensus 122 G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~ 201 (394)
T PLN02155 122 GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQ 201 (394)
T ss_pred cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccc
Confidence 99999999999764443333457789999999999999999999999999999999999999999999889999999999
Q ss_pred CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEcee----cCCcEEEEEEEeEEEEc
Q 012308 236 SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSE----MSGGVSEVHAENLYFFN 311 (466)
Q Consensus 236 ~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~----~~~~v~nI~i~n~~i~~ 311 (466)
+|+||+|+||+|.+|||||+++++ ++||+|+||+|.. +|||+|||+ ..++++||+|+||+|.+
T Consensus 202 ~s~nV~I~~~~I~~gDDcIaik~g-----------s~nI~I~n~~c~~--GhGisIGS~g~~~~~~~V~nV~v~n~~~~~ 268 (394)
T PLN02155 202 FSTGVTFTGSTVQTGDDCVAIGPG-----------TRNFLITKLACGP--GHGVSIGSLAKELNEDGVENVTVSSSVFTG 268 (394)
T ss_pred cceeEEEEeeEEecCCceEEcCCC-----------CceEEEEEEEEEC--CceEEeccccccCCCCcEEEEEEEeeEEeC
Confidence 999999999999999999999997 8999999999985 699999997 36789999999999999
Q ss_pred CceeEEEEecCC-CCeeEEEEEEEceEEcCcceeEEEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeee-ceeEEEEcc
Q 012308 312 SVRGIRIKTSPG-RGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENV-KMAGQLEGI 389 (466)
Q Consensus 312 ~~~Gi~I~s~~g-~~g~v~nI~~~ni~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~-~~~~~i~g~ 389 (466)
+.+|++||+|.+ ++|+|+||+|+||+|+++++||.|++.|+.....+..+...+.|+||+|+||+++.. ..++.+.|+
T Consensus 269 t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~ 348 (394)
T PLN02155 269 SQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCS 348 (394)
T ss_pred CCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeC
Confidence 999999999865 689999999999999999999999999965332221222335899999999999987 457799999
Q ss_pred CCCCeeeEEEEeEEEEcCC--CCCeEEeeeecccCcc-CCCCCCC
Q 012308 390 EGDTFRYICLSNIKLNGVS--ESPWNCSYIQGYSDLV-FPETCDP 431 (466)
Q Consensus 390 ~~~~~~~I~~~Ni~i~~~~--~~~~~c~~v~g~~~~~-~p~~c~~ 431 (466)
++.||+||+|+||+++..+ ...+.|+|++|....+ .|.+|.+
T Consensus 349 ~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 349 KSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred CCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCcccccC
Confidence 9999999999999999743 3479999999997766 5667863
No 3
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=7e-71 Score=558.19 Aligned_cols=355 Identities=27% Similarity=0.398 Sum_probs=308.1
Q ss_pred CCCCCeeEEEeecCccCCCcchhHHHHHHHHHH-hhccccCCCcEEEecCCcceEeeEEee------cCceEEecCCcEE
Q 012308 36 EVFRPHSVSITEFGAVGDGVTLNTKAFQNAIFY-LNSFADKGGAKLFVPAGQWLTGSFDLI------SHLTLWLDKDAVI 108 (466)
Q Consensus 36 ~~~~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~~-a~~~~~~gg~tV~iP~G~Y~~~~l~l~------s~~tL~l~~ga~i 108 (466)
...++.++||+||||+|||++|||+|||+||++ |+ +.+|++|+||+|+|++++|.|+ ++++| +|
T Consensus 30 ~~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~---~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l------~L 100 (404)
T PLN02188 30 KGSSTFLFDVRSFGARANGHTDDSKAFMAAWKAACA---STGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF------TL 100 (404)
T ss_pred ccCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhc---cCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE------EE
Confidence 345678999999999999999999999999975 53 5778899999999999999996 45554 88
Q ss_pred ecCCCCCCCCCCCCCCCCCcccccCCCcceeeEEEecceeeEEeCcceeeeCCcchhhhhhcC--CCCCCCCCeeEEEEe
Q 012308 109 LGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRN--GTLDYTRPHLVELMN 186 (466)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~G~~~w~~~~~--~~~~~~rp~~i~~~~ 186 (466)
+++.+.++|+.. ..++.+..++||+|+|. |+|||||+.||+.... ......||++|.|.+
T Consensus 101 ~~s~d~~~y~~~-----------------~~~i~~~~~~ni~I~G~-G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~ 162 (404)
T PLN02188 101 KAATDLSRYGSG-----------------NDWIEFGWVNGLTLTGG-GTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVN 162 (404)
T ss_pred EcCCCHHHCCCc-----------------cceEEEeceeeEEEEee-EEEeCCCcccccccccccCCCCCcCceEEEEEe
Confidence 999998888531 23566677999999996 9999999999974321 123356899999999
Q ss_pred ecceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcc
Q 012308 187 STGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGIS 266 (466)
Q Consensus 187 ~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~ 266 (466)
|+|++|++++++|+|+|++++..|+||+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++
T Consensus 163 ~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg------- 235 (404)
T PLN02188 163 MNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQG------- 235 (404)
T ss_pred eeeEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccC-------
Confidence 9999999999999999999999999999999999999889999999999999999999999999999999997
Q ss_pred cCCCceeEEEEEEEEecCCCCeEEEce----ecCCcEEEEEEEeEEEEcCceeEEEEecCC--CCeeEEEEEEEceEEcC
Q 012308 267 YGRPSTKITIHGLIGETKLGAGIAIGS----EMSGGVSEVHAENLYFFNSVRGIRIKTSPG--RGGYVRNISISNVTLNH 340 (466)
Q Consensus 267 ~~~~s~nI~I~n~~~~~~~~~gi~Igs----~~~~~v~nI~i~n~~i~~~~~Gi~I~s~~g--~~g~v~nI~~~ni~i~~ 340 (466)
++||+|+|+.|.. +|||+||| ++.++++||+|+||+|.++.+|++||+|.+ ++|.|+||+|+||+|++
T Consensus 236 ----~~nI~I~n~~c~~--ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~ 309 (404)
T PLN02188 236 ----NSQVTITRIRCGP--GHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNN 309 (404)
T ss_pred ----CccEEEEEEEEcC--CCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecC
Confidence 7899999999964 69999999 667889999999999999999999999975 35899999999999999
Q ss_pred cceeEEEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeee-ceeEEEEccCCCCeeeEEEEeEEEEcC-C--CCCeEEee
Q 012308 341 VDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENV-KMAGQLEGIEGDTFRYICLSNIKLNGV-S--ESPWNCSY 416 (466)
Q Consensus 341 ~~~~i~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~-~~~~~i~g~~~~~~~~I~~~Ni~i~~~-~--~~~~~c~~ 416 (466)
+++||.|++.|+....+...+...+.|+||+|+||+++.. ..++.+.|+++.||+||+|+||+++.. + ...+.|+|
T Consensus 310 v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~n 389 (404)
T PLN02188 310 VTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCEN 389 (404)
T ss_pred ccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEc
Confidence 9999999999976433211222346899999999999986 457889999999999999999999863 2 35799999
Q ss_pred eecccC-ccCCCCCC
Q 012308 417 IQGYSD-LVFPETCD 430 (466)
Q Consensus 417 v~g~~~-~~~p~~c~ 430 (466)
+.|... .+.|.|||
T Consensus 390 v~g~~~g~~~p~~C~ 404 (404)
T PLN02188 390 VRAKYIGTQIPPPCP 404 (404)
T ss_pred ceeEEcccCcCCCCC
Confidence 999876 67788897
No 4
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=5e-70 Score=555.48 Aligned_cols=354 Identities=29% Similarity=0.452 Sum_probs=312.0
Q ss_pred CCCeeEEEeecCccCCCcchhHHHHHHHHH-HhhccccCCCcEEEecCC-cceEeeEEee----cCceEEecCCcEEecC
Q 012308 38 FRPHSVSITEFGAVGDGVTLNTKAFQNAIF-YLNSFADKGGAKLFVPAG-QWLTGSFDLI----SHLTLWLDKDAVILGS 111 (466)
Q Consensus 38 ~~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~-~a~~~~~~gg~tV~iP~G-~Y~~~~l~l~----s~~tL~l~~ga~i~~~ 111 (466)
.+++++||+||||+|||++|||+|||+||+ +|+ +.++++|+||+| +|+++++.|+ ++++|++ +|+|+++
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs---~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l--~g~L~~s 137 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACS---SNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQI--FGTLSAS 137 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhhh---cCCCcEEEECCCCeEEEeeeEecCccCCceEEEE--EEEEEeC
Confidence 367899999999999999999999999996 554 567789999999 6999999995 6777776 5999999
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCcceeeEEEecceeeEEeCc-ceeeeCCcchhhhhhcCCC---CCCCCCeeEEEEee
Q 012308 112 TNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGD-NGTIDGQGSIWWEWFRNGT---LDYTRPHLVELMNS 187 (466)
Q Consensus 112 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~nv~I~G~-~G~IdG~G~~~w~~~~~~~---~~~~rp~~i~~~~~ 187 (466)
.+.++|+.. ..|+.+.+.+||+|+|. .|+|||||+.||+...... ....||+++.|.+|
T Consensus 138 ~d~~~y~~~-----------------~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~ 200 (431)
T PLN02218 138 QKRSDYKDI-----------------SKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNS 200 (431)
T ss_pred CChhhcccc-----------------ccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEcc
Confidence 998888521 24688999999999993 2999999999997543211 12469999999999
Q ss_pred cceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCccc
Q 012308 188 TGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISY 267 (466)
Q Consensus 188 ~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~ 267 (466)
+|++|++++++|+|+|++++..|+||+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|++
T Consensus 201 ~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksg-------- 272 (431)
T PLN02218 201 KSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG-------- 272 (431)
T ss_pred ccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCC--------
Confidence 999999999999999999999999999999999999889999999999999999999999999999999997
Q ss_pred CCCceeEEEEEEEEecCCCCeEEEceecC----CcEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEEEEEceEEcCcce
Q 012308 268 GRPSTKITIHGLIGETKLGAGIAIGSEMS----GGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDV 343 (466)
Q Consensus 268 ~~~s~nI~I~n~~~~~~~~~gi~Igs~~~----~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI~~~ni~i~~~~~ 343 (466)
++||+|+||+|.. +|||+|||++. +.|+||+|+||++.++.+|+|||+|+|++|.|+||+|+|++|+++++
T Consensus 273 ---s~nI~I~n~~c~~--GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~ 347 (431)
T PLN02218 273 ---SQNVQINDITCGP--GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKN 347 (431)
T ss_pred ---CceEEEEeEEEEC--CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccc
Confidence 8999999999964 69999999974 47999999999999999999999999999999999999999999999
Q ss_pred eEEEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeee-ceeEEEEccCCCCeeeEEEEeEEEEcCCCCCeEEeeeecccC
Q 012308 344 AIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENV-KMAGQLEGIEGDTFRYICLSNIKLNGVSESPWNCSYIQGYSD 422 (466)
Q Consensus 344 ~i~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~-~~~~~i~g~~~~~~~~I~~~Ni~i~~~~~~~~~c~~v~g~~~ 422 (466)
||.|++.|.....+... ...+.|+||+|+||+++.. ..++.+.|+++.||+||+|+||+++.. ...|+|+.+...
T Consensus 348 pI~Idq~Y~~~~~~~~~-~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~---~~~c~n~~~~~~ 423 (431)
T PLN02218 348 PIIIDQDYCDKSKCTSQ-QSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG---KATCTNANVVDK 423 (431)
T ss_pred cEEEEeeccCCCCCCCC-CCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC---eeeEEEeeEEEc
Confidence 99999999765433222 3345899999999999976 467889999999999999999999863 467999999987
Q ss_pred ccCCCCCC
Q 012308 423 LVFPETCD 430 (466)
Q Consensus 423 ~~~p~~c~ 430 (466)
.+.|++|.
T Consensus 424 ~~~~p~c~ 431 (431)
T PLN02218 424 GAVSPQCN 431 (431)
T ss_pred ccCCCCCC
Confidence 77676884
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=3.6e-69 Score=547.01 Aligned_cols=357 Identities=31% Similarity=0.545 Sum_probs=309.8
Q ss_pred CCeeEEEeecCccCCCcchhHHHHHHHHHHhhccccCCCcEEEecCC-cceEeeEEeecCc---eEEecCCcEEecCCCC
Q 012308 39 RPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAG-QWLTGSFDLISHL---TLWLDKDAVILGSTNS 114 (466)
Q Consensus 39 ~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~~a~~~~~~gg~tV~iP~G-~Y~~~~l~l~s~~---tL~l~~ga~i~~~~~~ 114 (466)
.+.++||+||||+|||++|||+|||+||++|+ +..+|++|+||+| +|++++|.|+++. .+.++..++|+++..
T Consensus 20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC--~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~- 96 (456)
T PLN03003 20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVC--SGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK- 96 (456)
T ss_pred eeeEEehhhcCCCCCCCcccHHHHHHHHHHhh--hccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-
Confidence 56789999999999999999999999999954 2568899999999 5899999998743 356666778877543
Q ss_pred CCCCCCCCCCCCCcccccCCCcceeeEEEecceeeEEeCcceeeeCCcchhhhhhcCCCCCCCCCeeEEEEeecceEEee
Q 012308 115 DTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISN 194 (466)
Q Consensus 115 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~G~~~w~~~~~~~~~~~rp~~i~~~~~~nv~I~~ 194 (466)
..|.. ....||.+.+++|++|+|. |+|||||+.||+. ...||.++.|.+|+|++|+|
T Consensus 97 ~~w~~----------------~~~~wI~f~~~~~i~I~G~-GtIDGqG~~wW~~------~~~rP~~l~f~~~~nv~I~g 153 (456)
T PLN03003 97 GNWKG----------------DKDQWILFTDIEGLVIEGD-GEINGQGSSWWEH------KGSRPTALKFRSCNNLRLSG 153 (456)
T ss_pred ccccC----------------CCcceEEEEcccceEEecc-ceEeCCchhhhhc------ccCCceEEEEEecCCcEEeC
Confidence 34531 0135899999999999997 9999999999974 24689999999999999999
Q ss_pred EEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeE
Q 012308 195 LTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKI 274 (466)
Q Consensus 195 v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI 274 (466)
++++|+|.|++++..|+||+|++++|.++..++|+||||+.+|+||+|+||+|.+|||||++|++ ++||
T Consensus 154 itl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg-----------s~NI 222 (456)
T PLN03003 154 LTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNI 222 (456)
T ss_pred eEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC-----------CccE
Confidence 99999999999999999999999999999889999999999999999999999999999999997 8999
Q ss_pred EEEEEEEecCCCCeEEEceecC----CcEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEEEEEceEEcCcceeEEEeee
Q 012308 275 TIHGLIGETKLGAGIAIGSEMS----GGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGH 350 (466)
Q Consensus 275 ~I~n~~~~~~~~~gi~Igs~~~----~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI~~~ni~i~~~~~~i~i~~~ 350 (466)
+|+||+|.. +|||+|||++. +.++||+|+||++.++.+|++||+|+|++|+|+||+|+|++|+++.+||.|++.
T Consensus 223 ~I~n~~c~~--GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~ 300 (456)
T PLN03003 223 HISGIDCGP--GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQF 300 (456)
T ss_pred EEEeeEEEC--CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcc
Confidence 999999974 69999999975 359999999999999999999999999889999999999999999999999999
Q ss_pred cCCCC-CCCC-CCCCCCeEEeEEEEEEEEeeec-eeEEEEccCCCCeeeEEEEeEEEEcC--C---CCCeEEeeeecccC
Q 012308 351 FGEHP-DDSY-DPSALPIIERITIKNVIGENVK-MAGQLEGIEGDTFRYICLSNIKLNGV--S---ESPWNCSYIQGYSD 422 (466)
Q Consensus 351 y~~~~-~~~~-~~~~~~~v~nIt~~nI~~~~~~-~~~~i~g~~~~~~~~I~~~Ni~i~~~--~---~~~~~c~~v~g~~~ 422 (466)
|+... ...+ .+...+.|+||+|+||+++... .++.+.|+++.||+||+|+||+++.. + .+.+.|+|+.|...
T Consensus 301 Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~ 380 (456)
T PLN03003 301 YNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGAST 380 (456)
T ss_pred cCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccC
Confidence 97532 2111 2233468999999999998654 57889999999999999999999863 2 25799999999887
Q ss_pred ccCCC-CCCCccc
Q 012308 423 LVFPE-TCDPLKE 434 (466)
Q Consensus 423 ~~~p~-~c~~~~~ 434 (466)
.+.|+ ||.++..
T Consensus 381 ~~~~~~~C~~~~~ 393 (456)
T PLN03003 381 IAVPGLECLELST 393 (456)
T ss_pred ceECCCCccccCC
Confidence 76654 8998743
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=1.9e-68 Score=539.12 Aligned_cols=346 Identities=29% Similarity=0.439 Sum_probs=304.5
Q ss_pred CCeeEEEeecCccCCCcchhHHHHHHHHHHhhccccCC--CcEEEecCC-cceEeeEEeec-----CceEEecCCcEEec
Q 012308 39 RPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKG--GAKLFVPAG-QWLTGSFDLIS-----HLTLWLDKDAVILG 110 (466)
Q Consensus 39 ~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~~a~~~~~~g--g~tV~iP~G-~Y~~~~l~l~s-----~~tL~l~~ga~i~~ 110 (466)
.+.++||+||||+|||++|||+|||+||++|+ ..+ +++|+||+| +|++++|.|++ +++|+++ ++|++
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac---~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~--G~l~~ 117 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATC---GGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLD--GIIVA 117 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHc---cCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEc--cEEEc
Confidence 44689999999999999999999999999764 233 379999999 79999999995 6777775 88999
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCcceeeEEEecceeeEEeCcceeeeCCcchhhhhhcCCCCCCCCCeeEEEEeecce
Q 012308 111 STNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGV 190 (466)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~G~~~w~~~~~~~~~~~rp~~i~~~~~~nv 190 (466)
+.+..+|+... ...|+.+.+++||+|+|. |+|||+|+.||+ ++.|.+|+|+
T Consensus 118 ~~d~~~w~~~~---------------~~~wi~f~~v~nv~I~G~-G~IDG~G~~ww~-------------~l~~~~~~nv 168 (409)
T PLN03010 118 PSNIVAWSNPK---------------SQMWISFSTVSGLMIDGS-GTIDGRGSSFWE-------------ALHISKCDNL 168 (409)
T ss_pred cCChhhccCCC---------------CcceEEEecccccEEeec-eEEeCCCccccc-------------eEEEEeecCe
Confidence 99988885311 134788899999999997 999999999995 5899999999
Q ss_pred EEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCCC
Q 012308 191 IISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRP 270 (466)
Q Consensus 191 ~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~ 270 (466)
+|++++++|+|.|++++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|++
T Consensus 169 ~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksg----------- 237 (409)
T PLN03010 169 TINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG----------- 237 (409)
T ss_pred EEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCC-----------
Confidence 999999999999999999999999999999999888999999999999999999999999999999997
Q ss_pred ceeEEEEEEEEecCCCCeEEEceecCCc----EEEEEEEeEEEEcCceeEEEEecCCCCeeEEEEEEEceEEcCcceeEE
Q 012308 271 STKITIHGLIGETKLGAGIAIGSEMSGG----VSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAII 346 (466)
Q Consensus 271 s~nI~I~n~~~~~~~~~gi~Igs~~~~~----v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI~~~ni~i~~~~~~i~ 346 (466)
+.|+.|+++.|.. +|||+|||++.++ ++||+|+||+|.++.+|++||+|+|++|.|+||+|+||+|+++++||.
T Consensus 238 s~ni~I~~~~C~~--gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~ 315 (409)
T PLN03010 238 SSNINITQINCGP--GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPII 315 (409)
T ss_pred CCcEEEEEEEeEC--cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEE
Confidence 7899999999974 6999999996544 999999999999999999999999989999999999999999999999
Q ss_pred EeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeeec-eeEEEEccCCCCeeeEEEEeEEEEcC--CCCCeEEeeeecccC-
Q 012308 347 FTGHFGEHPDDSYDPSALPIIERITIKNVIGENVK-MAGQLEGIEGDTFRYICLSNIKLNGV--SESPWNCSYIQGYSD- 422 (466)
Q Consensus 347 i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~~-~~~~i~g~~~~~~~~I~~~Ni~i~~~--~~~~~~c~~v~g~~~- 422 (466)
|++.|......+..+.....|+||+|+||+++... .++.|.|++..||+||+|+||+++.. +.+.+.|+|+.+...
T Consensus 316 I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~ 395 (409)
T PLN03010 316 IDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSD 395 (409)
T ss_pred EEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccC
Confidence 99999764332223344468999999999998653 67899999999999999999999973 346899999999764
Q ss_pred ccCCCCCCC
Q 012308 423 LVFPETCDP 431 (466)
Q Consensus 423 ~~~p~~c~~ 431 (466)
.+.|.+|.+
T Consensus 396 ~~~~~~C~~ 404 (409)
T PLN03010 396 TDLMRDCFK 404 (409)
T ss_pred CCCCCcccc
Confidence 456777874
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=2e-54 Score=431.79 Aligned_cols=309 Identities=38% Similarity=0.632 Sum_probs=260.0
Q ss_pred cCCCcEEEecCCcceEeeEEeec----CceEEecCCcEEecCCCCCCCCCCCCCCCCCcccccCCCcceeeEEEecceee
Q 012308 74 DKGGAKLFVPAGQWLTGSFDLIS----HLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDV 149 (466)
Q Consensus 74 ~~gg~tV~iP~G~Y~~~~l~l~s----~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~nv 149 (466)
+.++++|+||+|+|+++++.|++ ++++.|+ +++.++.....+ +. ..+|++.+++|+
T Consensus 3 ~~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~--G~~~~~~~~~~~-----------------~~-~~~i~~~~~~ni 62 (326)
T PF00295_consen 3 SIGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLD--GTINFSYDNWEG-----------------PN-SALIYAENAENI 62 (326)
T ss_dssp EEEEESEEESTSTEEEEETSEETECETTCEEEEE--SEEEEG-EESTS-----------------E--SEEEEEESEEEE
T ss_pred CCcCCEEEECCCCeEEceeEEEcccCCCeEEEEE--EEEEeCCCcccC-----------------Cc-cEEEEEEceEEE
Confidence 45678999999999999999995 4455543 333333111111 11 578999999999
Q ss_pred EEeCcceeeeCCcchhhhhhcC-CCCCCCCCeeEEEEeecceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCC
Q 012308 150 VITGDNGTIDGQGSIWWEWFRN-GTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPN 228 (466)
Q Consensus 150 ~I~G~~G~IdG~G~~~w~~~~~-~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n 228 (466)
+|+|. |+|||+|+.||+.... ......||.++.|..|+|++|++++++|+|.|++++..|+||+|++++|.++...+|
T Consensus 63 ~i~G~-G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~N 141 (326)
T PF00295_consen 63 TITGK-GTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPN 141 (326)
T ss_dssp ECTTS-SEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS
T ss_pred EecCC-ceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCC
Confidence 99997 9999999999985433 134567999999999999999999999999999999999999999999999888899
Q ss_pred CCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCC----cEEEEEE
Q 012308 229 TDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSG----GVSEVHA 304 (466)
Q Consensus 229 ~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~----~v~nI~i 304 (466)
+||||+.+|+||+|+||+|.++||||++|++ ..||+|+||+|.+ ++|++|||++.+ .++||+|
T Consensus 142 tDGid~~~s~nv~I~n~~i~~gDD~Iaiks~-----------~~ni~v~n~~~~~--ghGisiGS~~~~~~~~~i~nV~~ 208 (326)
T PF00295_consen 142 TDGIDIDSSKNVTIENCFIDNGDDCIAIKSG-----------SGNILVENCTCSG--GHGISIGSEGSGGSQNDIRNVTF 208 (326)
T ss_dssp --SEEEESEEEEEEESEEEESSSESEEESSE-----------ECEEEEESEEEES--SSEEEEEEESSSSE--EEEEEEE
T ss_pred cceEEEEeeeEEEEEEeecccccCccccccc-----------ccceEEEeEEEec--cccceeeeccCCccccEEEeEEE
Confidence 9999999999999999999999999999996 5699999999985 599999999865 4899999
Q ss_pred EeEEEEcCceeEEEEecCCCCeeEEEEEEEceEEcCcceeEEEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeeec-ee
Q 012308 305 ENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVK-MA 383 (466)
Q Consensus 305 ~n~~i~~~~~Gi~I~s~~g~~g~v~nI~~~ni~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~~-~~ 383 (466)
+||+|.++.+|++||++++++|.|+||+||||+|+++++||.|++.|..... ...+...+.|+||+|+||+++... .+
T Consensus 209 ~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~-~~~~~~~~~i~nI~~~nitg~~~~~~~ 287 (326)
T PF00295_consen 209 ENCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGP-CGKPPSGVSISNITFRNITGTSAGSSA 287 (326)
T ss_dssp EEEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEE-SSCSSSSSEEEEEEEEEEEEEESTSEE
T ss_pred EEEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEeccccccc-cCcccCCceEEEEEEEeeEEEeccceE
Confidence 9999999999999999998899999999999999999999999999876221 122333458999999999999886 78
Q ss_pred EEEEccCCCCeeeEEEEeEEEEcCCCCCeEEeeee
Q 012308 384 GQLEGIEGDTFRYICLSNIKLNGVSESPWNCSYIQ 418 (466)
Q Consensus 384 ~~i~g~~~~~~~~I~~~Ni~i~~~~~~~~~c~~v~ 418 (466)
+.+.|.+..||+||+|+||+++. +..++.|+|+.
T Consensus 288 i~i~~~~~~~~~ni~f~nv~i~~-g~~~~~c~nv~ 321 (326)
T PF00295_consen 288 ISIDCSPGSPCSNITFENVNITG-GKKPAQCKNVP 321 (326)
T ss_dssp EEEE-BTTSSEEEEEEEEEEEES-SBSESEEBSCC
T ss_pred EEEEECCcCcEEeEEEEeEEEEc-CCcCeEEECCC
Confidence 89999999999999999999998 46678999887
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6e-47 Score=389.36 Aligned_cols=302 Identities=37% Similarity=0.596 Sum_probs=255.1
Q ss_pred CCeeEEEeecCccCCCcchhHHHHHHHHHHhhccccCCCcEEEecCCcceEeeEEeecCceEEecCCcEEecCCCCCCCC
Q 012308 39 RPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWP 118 (466)
Q Consensus 39 ~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~~l~l~s~~tL~l~~ga~i~~~~~~~~~~ 118 (466)
....++|++|||+|||.++|++|||+||++|. ..+|++|+||+|+|+.++|+|||+++|++++|++|+++.++.+|+
T Consensus 79 ~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca---~a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~~~p~~y~ 155 (542)
T COG5434 79 TDTAFSVSDDGAVGDGATDNTAAIQAAIDACA---SAGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNPKDYP 155 (542)
T ss_pred ccceeeeccccccccCCccCHHHHHHHHHhhh---hhcCceEEECCceeEeeeEEEecccEEEecCCceeeCCCChhhcc
Confidence 55689999999999999999999999999996 579999999999999999999999999999999999999999998
Q ss_pred C--------CCCC----CC---CCcccccCCCcceeeEEEecceeeE-EeCcceeeeCCc----chhhhhhc--CCCCCC
Q 012308 119 V--------IDPL----PS---YGRGRELPGGRHRSLIFGRNLTDVV-ITGDNGTIDGQG----SIWWEWFR--NGTLDY 176 (466)
Q Consensus 119 ~--------~~~~----~~---~~~g~~~~~~~~~~li~~~~~~nv~-I~G~~G~IdG~G----~~~w~~~~--~~~~~~ 176 (466)
. ..++ ++ .+.++..... +..++.....+|.. |.|. ++++|++ ..||.... ..+...
T Consensus 156 ~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~-~~~~~~~~~~~n~~~i~g~-~~i~g~~~~~g~~~~~~~g~~~~~i~~ 233 (542)
T COG5434 156 SFTSRFNGNSGPYVYATDSDNAMISGEGLADG-KADLLIAGNSSNRKEIWGK-GTIDGNGYKRGDKWFSGLGAVETRIGG 233 (542)
T ss_pred ccccccccccCcceeeecccCceeeeeccccc-CcccceeccCCceEEEecc-ceecCccccchhhhhhcccchhhcccc
Confidence 4 1110 00 0111111122 23444455566666 9997 9999975 22775433 122223
Q ss_pred --CCCeeEEEEeecceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceE
Q 012308 177 --TRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLV 254 (466)
Q Consensus 177 --~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i 254 (466)
.||..+.+..|.||+++|++|.+++.|.+++..|+|++++|++|.+.... |+|||++.+|+||+|++|+|.++||||
T Consensus 234 ~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I 312 (542)
T COG5434 234 KGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCI 312 (542)
T ss_pred cCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceE
Confidence 69999999999999999999999999999999999999999999998755 999999999999999999999999999
Q ss_pred eecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEEEEE
Q 012308 255 SIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISIS 334 (466)
Q Consensus 255 ai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI~~~ 334 (466)
++|++....+.....+++||.|+||++... ..++.+|||+.++++||++|||.|.++.+|++||+..+++|.++||+|+
T Consensus 313 ~iksg~~~~~~~~~~~~~~i~i~~c~~~~g-hG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG~v~nI~~~ 391 (542)
T COG5434 313 AIKSGAGLDGKKGYGPSRNIVIRNCYFSSG-HGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVFE 391 (542)
T ss_pred EeecccCCcccccccccccEEEecceeccc-ccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccceeEEEEEEe
Confidence 999997776656677899999999999976 6778999999999999999999999999999999999999999999999
Q ss_pred ceEEcCcceeEEE
Q 012308 335 NVTLNHVDVAIIF 347 (466)
Q Consensus 335 ni~i~~~~~~i~i 347 (466)
++++.++..+..+
T Consensus 392 ~~~~~nv~t~~~i 404 (542)
T COG5434 392 DNKMRNVKTKLSI 404 (542)
T ss_pred cccccCcccceee
Confidence 9999998544433
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.96 E-value=1.4e-28 Score=245.74 Aligned_cols=176 Identities=22% Similarity=0.162 Sum_probs=140.7
Q ss_pred CCCeeEEEeecCccCCCcchhHHHHHHHHHHhhccccCCCcEEEecCCcceEeeEEeecCceEEecCCcEEecCCCCCCC
Q 012308 38 FRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTW 117 (466)
Q Consensus 38 ~~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~~l~l~s~~tL~l~~ga~i~~~~~~~~~ 117 (466)
.+.+.+|+++|||++||.+|+|+|||+||++|+ ++|++|.+|+|+|+.++|.|+++++|.++++++....+
T Consensus 33 ~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa----~gG~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt~~vId----- 103 (455)
T TIGR03808 33 TSTLGRDATQYGVRPNSPDDQTRALQRAIDEAA----RAQTPLALPPGVYRTGPLRLPSGAQLIGVRGATRLVFT----- 103 (455)
T ss_pred CCccCCCHHHcCcCCCCcchHHHHHHHHHHHhh----cCCCEEEECCCceecccEEECCCcEEEecCCcEEEEEc-----
Confidence 455669999999999999999999999999984 56789999999999999999999999999998722100
Q ss_pred CCCCCCCCCCcccccCCCcceeeEEEecceeeEEeCcceeeeCCcchhhhhhcCCCCCCCCCeeEEEEeecceEEeeEEE
Q 012308 118 PVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTF 197 (466)
Q Consensus 118 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~G~~~w~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i 197 (466)
| . .+++.....+||+|+| -+|+|+|..| ..++.+|++..|++++|++++|
T Consensus 104 -----------G------~-~~lIiai~A~nVTIsG--LtIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L 153 (455)
T TIGR03808 104 -----------G------G-PSLLSSEGADGIGLSG--LTLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEI 153 (455)
T ss_pred -----------C------C-ceEEEEecCCCeEEEe--eEEEeCCCcc----------cCCCCEEEEccCCceEEEeeEE
Confidence 0 0 3567788999999999 6999999765 2477899999999999999999
Q ss_pred ecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEc-CCceEeec
Q 012308 198 LNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYIST-GDDLVSIK 257 (466)
Q Consensus 198 ~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~ 257 (466)
.++..|++.+..|+ ..|.+.+|.... ..+|+++.+++++|++++|.. .|++|.+.
T Consensus 154 ~gsg~FGI~L~~~~-~~I~~N~I~g~~----~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~ 209 (455)
T TIGR03808 154 TGSGGNGIWLETVS-GDISGNTITQIA----VTAIVSFDALGLIVARNTIIGANDNGIEIL 209 (455)
T ss_pred EcCCcceEEEEcCc-ceEecceEeccc----cceEEEeccCCCEEECCEEEccCCCCeEEE
Confidence 99988999999999 566666665532 334666666666666666665 45455544
No 10
>PLN02793 Probable polygalacturonase
Probab=99.88 E-value=2e-20 Score=192.46 Aligned_cols=249 Identities=17% Similarity=0.153 Sum_probs=185.8
Q ss_pred eeEEEEeecceEEeeEEEecCC---c-----------------eEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCcc
Q 012308 180 HLVELMNSTGVIISNLTFLNPP---F-----------------WTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDD 239 (466)
Q Consensus 180 ~~i~~~~~~nv~I~~v~i~ns~---~-----------------~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~n 239 (466)
..+.+.+.+|++|.|--..|.. . ..+.+..|+|++|+++++.+++. .-+++..|+|
T Consensus 135 ~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~----~~i~~~~~~n 210 (443)
T PLN02793 135 KWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQ----MHIAFTNCRR 210 (443)
T ss_pred eEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCC----eEEEEEccCc
Confidence 4688889999999884333311 1 23778899999999999999763 3488889999
Q ss_pred EEEEeeEEEc-----CCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCce
Q 012308 240 VCIKDCYIST-----GDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVR 314 (466)
Q Consensus 240 V~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~ 314 (466)
|+|++.+|.+ +.|||.+.+ ++||+|+||++.+. +++|+|++ +.+||+|+||++... +
T Consensus 211 v~i~~l~I~~p~~spNTDGIdi~~------------s~nV~I~n~~I~~g-DDcIaik~----~s~nI~I~n~~c~~G-h 272 (443)
T PLN02793 211 VTISGLKVIAPATSPNTDGIHISA------------SRGVVIKDSIVRTG-DDCISIVG----NSSRIKIRNIACGPG-H 272 (443)
T ss_pred EEEEEEEEECCCCCCCCCcEeeec------------cceEEEEeCEEeCC-CCeEEecC----CcCCEEEEEeEEeCC-c
Confidence 9999999986 568888876 89999999999988 99999985 468999999999665 8
Q ss_pred eEEEEecCC--CCeeEEEEEEEceEEcCcceeEEEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeeeceeEEEEccC--
Q 012308 315 GIRIKTSPG--RGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIE-- 390 (466)
Q Consensus 315 Gi~I~s~~g--~~g~v~nI~~~ni~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~~~~~~i~g~~-- 390 (466)
||.|++... ..+.|+||+|+|+++.+..++++|+.+.+ +.+.++||+|+||.+.++..|+.+....
T Consensus 273 GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g----------~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~ 342 (443)
T PLN02793 273 GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG----------GSGNASKITFQNIFMENVSNPIIIDQYYCD 342 (443)
T ss_pred cEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC----------CCEEEEEEEEEeEEEecCCceEEEEeeecC
Confidence 999999632 23679999999999999999999997532 2358999999999999998888774421
Q ss_pred ----------CCCeeeEEEEeEEEEcCC--C------CCeEEeeeecccCccC-------CCCCCCcccCC-CCCccccc
Q 012308 391 ----------GDTFRYICLSNIKLNGVS--E------SPWNCSYIQGYSDLVF-------PETCDPLKESI-FPMHHLDC 444 (466)
Q Consensus 391 ----------~~~~~~I~~~Ni~i~~~~--~------~~~~c~~v~g~~~~~~-------p~~c~~~~~~~-~~~~~~~~ 444 (466)
...++||+|+||+.+... . ...-|+|+.-....+. ..-|.+..++. ..+.|..|
T Consensus 343 ~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C 422 (443)
T PLN02793 343 SRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPC 422 (443)
T ss_pred CCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCcc
Confidence 124899999999987631 1 2233555543332211 12377655543 33667788
Q ss_pred cccccccccccccccc
Q 012308 445 YDLSNHFRSSRNQKRL 460 (466)
Q Consensus 445 ~~~~~~~~~~~~~~~~ 460 (466)
......++-.+-|..+
T Consensus 423 ~~~~~~~~~~~~~~~~ 438 (443)
T PLN02793 423 FSDSTSFIKQKVQSGS 438 (443)
T ss_pred ccCCCcccccccCCcc
Confidence 8766666655555443
No 11
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.88 E-value=1.9e-20 Score=191.17 Aligned_cols=241 Identities=18% Similarity=0.208 Sum_probs=181.3
Q ss_pred eeEEEEeecceEEeeEEEecCC---ce--------EEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEE
Q 012308 180 HLVELMNSTGVIISNLTFLNPP---FW--------TIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYIS 248 (466)
Q Consensus 180 ~~i~~~~~~nv~I~~v~i~ns~---~~--------~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~ 248 (466)
..|.|.+++|+.|.|--..|.. .| .+.+..|+|+.|+++++.+++. -.+++..|++|+|++.+|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----w~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM----AHIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc----EEEEEeccccEEEEEEEEe
Confidence 4699999999999984333321 22 5789999999999999999763 3488899999999999998
Q ss_pred c-----CCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCceeEEEEecCC
Q 012308 249 T-----GDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPG 323 (466)
Q Consensus 249 ~-----gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi~I~s~~g 323 (466)
+ +.|||.+.+ ++||+|+||++.+. |++|+|++ +.+||+|+||++.. .+||.|++...
T Consensus 181 ap~~spNTDGIDi~~------------S~nV~I~n~~I~tG-DDCIaiks----gs~NI~I~n~~c~~-GHGISIGSlg~ 242 (456)
T PLN03003 181 APESSPNTDGIDVGA------------SSNVVIQDCIIATG-DDCIAINS----GTSNIHISGIDCGP-GHGISIGSLGK 242 (456)
T ss_pred CCCCCCCCCcEeecC------------cceEEEEecEEecC-CCeEEeCC----CCccEEEEeeEEEC-CCCeEEeeccC
Confidence 6 567888776 89999999999988 99999996 46899999999975 48999999742
Q ss_pred --CCeeEEEEEEEceEEcCcceeEEEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeeeceeEEEEccC-----------
Q 012308 324 --RGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIE----------- 390 (466)
Q Consensus 324 --~~g~v~nI~~~ni~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~~~~~~i~g~~----------- 390 (466)
..+.|+||+|+|+++.+..+|++|+.+.+ +.+.++||+|+||.+.++..|+.+....
T Consensus 243 ~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~ 312 (456)
T PLN03003 243 DGETATVENVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDR 312 (456)
T ss_pred CCCcceEEEEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccC
Confidence 23579999999999999999999997532 2358999999999999998888764321
Q ss_pred ---CCCeeeEEEEeEEEEcCCC--C------CeEEeeeecccCccC----------CCCCCCcccCCCCCcc-ccccccc
Q 012308 391 ---GDTFRYICLSNIKLNGVSE--S------PWNCSYIQGYSDLVF----------PETCDPLKESIFPMHH-LDCYDLS 448 (466)
Q Consensus 391 ---~~~~~~I~~~Ni~i~~~~~--~------~~~c~~v~g~~~~~~----------p~~c~~~~~~~~~~~~-~~~~~~~ 448 (466)
...++||+|+||+.+.... . ..-|+++.-....+. .+-|....+....+.+ ..|..+.
T Consensus 313 ~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~~ 392 (456)
T PLN03003 313 KSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELS 392 (456)
T ss_pred CCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccccC
Confidence 1368999999999876321 1 233555543221111 1337776555433333 3688775
Q ss_pred cccc
Q 012308 449 NHFR 452 (466)
Q Consensus 449 ~~~~ 452 (466)
++.-
T Consensus 393 ~~~~ 396 (456)
T PLN03003 393 TDMF 396 (456)
T ss_pred CCcc
Confidence 5544
No 12
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.88 E-value=1.2e-21 Score=185.44 Aligned_cols=212 Identities=27% Similarity=0.317 Sum_probs=115.4
Q ss_pred eEEEeecCccCCCcchhHHHHHHHHHHhhccccCCCcEEEecCCcceEe-eEEeecCceEEecCCc-EEec-CCCCCCCC
Q 012308 42 SVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTG-SFDLISHLTLWLDKDA-VILG-STNSDTWP 118 (466)
Q Consensus 42 ~~nV~dfGA~gDg~tddT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~-~l~l~s~~tL~l~~ga-~i~~-~~~~~~~~ 118 (466)
++||+||||+|||++|||+|||+||++++ ..+|++||||+|+|++. ++.++++++|+++.++ +++. ......+.
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~---~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~ 77 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAA---AAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFS 77 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHC---STTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSC
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhcc---cCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccc
Confidence 47999999999999999999999996554 58999999999999998 5999999999998663 3332 22211111
Q ss_pred CCCCCCCCCcccccCCCcceeeEEE--------ecceeeEEeCcceeeeCCcchhhhhhcCCCCCCCCCeeEEEEeecce
Q 012308 119 VIDPLPSYGRGRELPGGRHRSLIFG--------RNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGV 190 (466)
Q Consensus 119 ~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~nv~I~G~~G~IdG~G~~~w~~~~~~~~~~~rp~~i~~~~~~nv 190 (466)
.. ...... ..++|++|.| ++... ......+.+..+.++
T Consensus 78 ~~-----------------~~~~~~~~~~~~~~~~i~nl~i~~-------~~~~~----------~~~~~~i~~~~~~~~ 123 (225)
T PF12708_consen 78 VV-----------------PGIGVFDSGNSNIGIQIRNLTIDG-------NGIDP----------NNNNNGIRFNSSQNV 123 (225)
T ss_dssp CE-----------------EEEEECCSCSCCEEEEEEEEEEEE-------TCGCE-----------SCEEEEEETTEEEE
T ss_pred cc-----------------cceeeeecCCCCceEEEEeeEEEc-------ccccC----------CCCceEEEEEeCCeE
Confidence 00 000111 1144455555 32111 011345777777788
Q ss_pred EEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCC
Q 012308 191 IISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGR 269 (466)
Q Consensus 191 ~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~ 269 (466)
.|+++++.++...++.+..++...+.+..... ++.+. ++.++.+.++.+..+++++...
T Consensus 124 ~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------ 183 (225)
T PF12708_consen 124 SISNVRIENSGGDGIYFNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIILG------------ 183 (225)
T ss_dssp EEEEEEEES-SS-SEEEECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEECE------------
T ss_pred EEEeEEEEccCccEEEEEccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEee------------
Confidence 88888887776666666544443333222110 11111 1234555666555555552111
Q ss_pred CceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCceeE
Q 012308 270 PSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGI 316 (466)
Q Consensus 270 ~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi 316 (466)
.+++.|+||++......||.+... .+++|+|++|.++..|+
T Consensus 184 -~~~~~i~n~~~~~~~~~gi~i~~~-----~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 184 -NNNITISNNTFEGNCGNGINIEGG-----SNIIISNNTIENCDDGI 224 (225)
T ss_dssp -EEEEEEECEEEESSSSESEEEEEC-----SEEEEEEEEEESSSEEE
T ss_pred -cceEEEEeEEECCccceeEEEECC-----eEEEEEeEEEECCccCc
Confidence 356666666665422455555432 12555555555555554
No 13
>PLN02218 polygalacturonase ADPG
Probab=99.88 E-value=8.4e-21 Score=194.30 Aligned_cols=195 Identities=15% Similarity=0.162 Sum_probs=160.2
Q ss_pred eEEEEeecceEEee---EEEecCC--c-----------------eEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCc
Q 012308 181 LVELMNSTGVIISN---LTFLNPP--F-----------------WTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSD 238 (466)
Q Consensus 181 ~i~~~~~~nv~I~~---v~i~ns~--~-----------------~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~ 238 (466)
.+.+.+.+|++|.| =+|.... . ..+.+.+|+|++|+++++.+++. .-+++..|+
T Consensus 149 wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~----w~i~~~~~~ 224 (431)
T PLN02218 149 WIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ----IQISIEKCS 224 (431)
T ss_pred CEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC----EEEEEEcee
Confidence 48888999999988 3343221 1 24778999999999999999763 348889999
Q ss_pred cEEEEeeEEEc-----CCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCc
Q 012308 239 DVCIKDCYIST-----GDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSV 313 (466)
Q Consensus 239 nV~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~ 313 (466)
||+|+|.+|.+ +.|||.+.+ ++||+|+||++.+. +++|+|++ +.+||+|+||++.. .
T Consensus 225 nV~i~~v~I~a~~~spNTDGIdi~s------------s~nV~I~n~~I~tG-DDcIaIks----gs~nI~I~n~~c~~-G 286 (431)
T PLN02218 225 NVQVSNVVVTAPADSPNTDGIHITN------------TQNIRVSNSIIGTG-DDCISIES----GSQNVQINDITCGP-G 286 (431)
T ss_pred eEEEEEEEEeCCCCCCCCCcEeecc------------cceEEEEccEEecC-CceEEecC----CCceEEEEeEEEEC-C
Confidence 99999999986 568888876 89999999999988 99999996 47899999999965 5
Q ss_pred eeEEEEecCCC--CeeEEEEEEEceEEcCcceeEEEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeeeceeEEEEccC-
Q 012308 314 RGIRIKTSPGR--GGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIE- 390 (466)
Q Consensus 314 ~Gi~I~s~~g~--~g~v~nI~~~ni~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~~~~~~i~g~~- 390 (466)
+|+.|++.... .+.|+||+|+|+++.+..+|++|+.+- .+.+.++||+|+||++.++..|+.+....
T Consensus 287 HGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~----------Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~ 356 (431)
T PLN02218 287 HGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ----------GGSGTASNIIFQNIQMENVKNPIIIDQDYC 356 (431)
T ss_pred CCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecC----------CCCeEEEEEEEEeEEEEcccccEEEEeecc
Confidence 89999997422 368999999999999999999999742 23358999999999999998888765421
Q ss_pred ----------CCCeeeEEEEeEEEEcC
Q 012308 391 ----------GDTFRYICLSNIKLNGV 407 (466)
Q Consensus 391 ----------~~~~~~I~~~Ni~i~~~ 407 (466)
...++||+|+||+.+..
T Consensus 357 ~~~~~~~~~s~v~I~nI~~~NI~gtsa 383 (431)
T PLN02218 357 DKSKCTSQQSAVQVKNVVYRNISGTSA 383 (431)
T ss_pred CCCCCCCCCCCeEEEEEEEEeEEEEec
Confidence 13489999999999864
No 14
>PLN03010 polygalacturonase
Probab=99.87 E-value=4.6e-20 Score=187.22 Aligned_cols=194 Identities=17% Similarity=0.223 Sum_probs=158.9
Q ss_pred eEEEEeecceEEeeEEEecC---Cce-EEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEc-----CC
Q 012308 181 LVELMNSTGVIISNLTFLNP---PFW-TIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYIST-----GD 251 (466)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns---~~~-~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-----gD 251 (466)
.+.|.+.+|+.|.|--..+. ..| .+.+..|+|++|+++++.+++. .-+++..|++|+|++..|.+ +.
T Consensus 132 wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~----~~i~i~~~~nv~i~~i~I~a~~~s~NT 207 (409)
T PLN03010 132 WISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPK----NHISIKTCNYVAISKINILAPETSPNT 207 (409)
T ss_pred eEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCc----eEEEEeccccEEEEEEEEeCCCCCCCC
Confidence 57889999999998554443 234 5889999999999999999763 34888899999999999986 56
Q ss_pred ceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCceeEEEEecCCC--CeeEE
Q 012308 252 DLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGR--GGYVR 329 (466)
Q Consensus 252 D~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~--~g~v~ 329 (466)
|||.+.+ ++||+|+||++.+. +++|+|++. ..++.|+++.+.. .+||.|++.... ...|+
T Consensus 208 DGiDi~~------------s~nV~I~n~~I~~g-DDcIaiksg----s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~ 269 (409)
T PLN03010 208 DGIDISY------------STNINIFDSTIQTG-DDCIAINSG----SSNINITQINCGP-GHGISVGSLGADGANAKVS 269 (409)
T ss_pred Cceeeec------------cceEEEEeeEEecC-CCeEEecCC----CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeE
Confidence 7777766 89999999999988 999999974 4578888888865 489999997422 25699
Q ss_pred EEEEEceEEcCcceeEEEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeeeceeEEEEccC------------CCCeeeE
Q 012308 330 NISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIE------------GDTFRYI 397 (466)
Q Consensus 330 nI~~~ni~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~~~~~~i~g~~------------~~~~~~I 397 (466)
||+|+|+++.+..++++|+.+.+ +.+.++||+|+||++.++..|+.+.... ...++||
T Consensus 270 nV~v~n~~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi 339 (409)
T PLN03010 270 DVHVTHCTFNQTTNGARIKTWQG----------GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNV 339 (409)
T ss_pred EEEEEeeEEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeE
Confidence 99999999999999999997532 2358999999999999998888764321 1258999
Q ss_pred EEEeEEEEc
Q 012308 398 CLSNIKLNG 406 (466)
Q Consensus 398 ~~~Ni~i~~ 406 (466)
+|+||+.+.
T Consensus 340 ~~~ni~GT~ 348 (409)
T PLN03010 340 KYVGFRGTT 348 (409)
T ss_pred EEEeeEEEe
Confidence 999999986
No 15
>PLN02155 polygalacturonase
Probab=99.86 E-value=1.6e-19 Score=182.93 Aligned_cols=196 Identities=15% Similarity=0.197 Sum_probs=159.1
Q ss_pred eEEEEeecceEEeeEEEecCC--ce--------------EEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEe
Q 012308 181 LVELMNSTGVIISNLTFLNPP--FW--------------TIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKD 244 (466)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns~--~~--------------~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n 244 (466)
.+.|.+.+|+.|.+=+|.... .| .+.+..|++++|+++++.+++. .-+++..|+||+|++
T Consensus 108 wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~----w~i~~~~~~nv~i~~ 183 (394)
T PLN02155 108 WILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQV----SHMTLNGCTNVVVRN 183 (394)
T ss_pred eEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCC----eEEEEECeeeEEEEE
Confidence 578899999999884443221 12 2788999999999999999763 348889999999999
Q ss_pred eEEEc-----CCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCceeEEEE
Q 012308 245 CYIST-----GDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIK 319 (466)
Q Consensus 245 ~~i~~-----gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi~I~ 319 (466)
.+|.+ +.|||.+.+ ++||+|+||++.+. +++|+|++ +.+||+|+||++... +|+.|+
T Consensus 184 v~I~~p~~~~NtDGidi~~------------s~nV~I~~~~I~~g-DDcIaik~----gs~nI~I~n~~c~~G-hGisIG 245 (394)
T PLN02155 184 VKLVAPGNSPNTDGFHVQF------------STGVTFTGSTVQTG-DDCVAIGP----GTRNFLITKLACGPG-HGVSIG 245 (394)
T ss_pred EEEECCCCCCCCCcccccc------------ceeEEEEeeEEecC-CceEEcCC----CCceEEEEEEEEECC-ceEEec
Confidence 99986 347777765 89999999999988 99999986 468999999999864 899999
Q ss_pred ecCC--CCeeEEEEEEEceEEcCcceeEEEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeeeceeEEEEc-c-C-----
Q 012308 320 TSPG--RGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEG-I-E----- 390 (466)
Q Consensus 320 s~~g--~~g~v~nI~~~ni~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~~~~~~i~g-~-~----- 390 (466)
+... ..+.|+||+++|+++.+..+|++|+.+.+ .+.+.|+||+|+||++.++..|+.+.. + +
T Consensus 246 S~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~---------~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~ 316 (394)
T PLN02155 246 SLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR---------PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGC 316 (394)
T ss_pred cccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC---------CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCC
Confidence 9732 25789999999999999999999997432 123589999999999999988887633 1 1
Q ss_pred -----CCCeeeEEEEeEEEEcC
Q 012308 391 -----GDTFRYICLSNIKLNGV 407 (466)
Q Consensus 391 -----~~~~~~I~~~Ni~i~~~ 407 (466)
...++||+|+||+.+..
T Consensus 317 ~~~~s~v~i~~It~~ni~gt~~ 338 (394)
T PLN02155 317 PNEYSGVKISQVTYKNIQGTSA 338 (394)
T ss_pred cCCCCCeEEEEEEEEeeEEEec
Confidence 13589999999999874
No 16
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.85 E-value=1.8e-19 Score=183.39 Aligned_cols=197 Identities=18% Similarity=0.168 Sum_probs=157.8
Q ss_pred eEEEEeecceEEeeEEEecCC---ce----------------EEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEE
Q 012308 181 LVELMNSTGVIISNLTFLNPP---FW----------------TIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVC 241 (466)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns~---~~----------------~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~ 241 (466)
.+.|.+++|++|.|--..|-. .| .+.+..|+|+.|+++++.+++ ...+++..|+||+
T Consensus 115 ~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp----~w~i~~~~~~~v~ 190 (404)
T PLN02188 115 WIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSK----FFHIALVECRNFK 190 (404)
T ss_pred eEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCC----CeEEEEEccccEE
Confidence 466777888888874333321 12 367889999999999999977 3458899999999
Q ss_pred EEeeEEEc-----CCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCceeE
Q 012308 242 IKDCYIST-----GDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGI 316 (466)
Q Consensus 242 I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi 316 (466)
|++.+|.+ +.|||.+.+ ++||+|+||++.+. +++|+|++ +.+||+|+|+++... +||
T Consensus 191 i~~v~I~~~~~spNtDGidi~~------------s~nV~I~n~~I~~G-DDcIaiks----g~~nI~I~n~~c~~g-hGi 252 (404)
T PLN02188 191 GSGLKISAPSDSPNTDGIHIER------------SSGVYISDSRIGTG-DDCISIGQ----GNSQVTITRIRCGPG-HGI 252 (404)
T ss_pred EEEEEEeCCCCCCCCCcEeeeC------------cccEEEEeeEEeCC-CcEEEEcc----CCccEEEEEEEEcCC-CcE
Confidence 99999986 568888876 89999999999988 99999986 357999999999654 899
Q ss_pred EEEecC--CCCeeEEEEEEEceEEcCcceeEEEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeeeceeEEEEcc-----
Q 012308 317 RIKTSP--GRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGI----- 389 (466)
Q Consensus 317 ~I~s~~--g~~g~v~nI~~~ni~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~~~~~~i~g~----- 389 (466)
.|++.. ...+.|+||+|+|+++.+..++++|+.+.+. .+.+.++||+|+||++.++..|+.+...
T Consensus 253 siGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~--------~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~ 324 (404)
T PLN02188 253 SVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS--------PGKSAATNMTFENIVMNNVTNPIIIDQKYCPFY 324 (404)
T ss_pred EeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC--------CCceEEEEEEEEeEEecCccceEEEEccccCCC
Confidence 999852 1236699999999999999999999975332 1124799999999999999888876431
Q ss_pred -------CCCCeeeEEEEeEEEEcC
Q 012308 390 -------EGDTFRYICLSNIKLNGV 407 (466)
Q Consensus 390 -------~~~~~~~I~~~Ni~i~~~ 407 (466)
....++||+|+||+.+..
T Consensus 325 ~~~~~~~s~v~I~nIt~~nI~gt~~ 349 (404)
T PLN02188 325 SCESKYPSGVTLSDIYFKNIRGTSS 349 (404)
T ss_pred CCCcCCCCCcEEEeEEEEEEEEEec
Confidence 124589999999999874
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.85 E-value=8.8e-20 Score=182.47 Aligned_cols=198 Identities=24% Similarity=0.268 Sum_probs=157.9
Q ss_pred CeeEEEEeecceEEee-EEEecCC--c---------------eEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccE
Q 012308 179 PHLVELMNSTGVIISN-LTFLNPP--F---------------WTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDV 240 (466)
Q Consensus 179 p~~i~~~~~~nv~I~~-v~i~ns~--~---------------~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV 240 (466)
..+|.+.+++|+.|.| =+|.... . ..+.+..|++++|+++++.+++. ..+++..|+||
T Consensus 51 ~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~----w~~~~~~~~nv 126 (326)
T PF00295_consen 51 SALIYAENAENITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPF----WHIHINDCDNV 126 (326)
T ss_dssp SEEEEEESEEEEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SS----ESEEEESEEEE
T ss_pred cEEEEEEceEEEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCe----eEEEEEccCCe
Confidence 4578899999999987 3443211 1 23889999999999999999763 34888899999
Q ss_pred EEEeeEEEc-----CCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCcee
Q 012308 241 CIKDCYIST-----GDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRG 315 (466)
Q Consensus 241 ~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~G 315 (466)
+|++..|.+ +.|||.+.+ ++||+|+||++.+. +++|++++... ||+|+||++.+. +|
T Consensus 127 ~i~~i~I~~~~~~~NtDGid~~~------------s~nv~I~n~~i~~g-DD~Iaiks~~~----ni~v~n~~~~~g-hG 188 (326)
T PF00295_consen 127 TISNITINNPANSPNTDGIDIDS------------SKNVTIENCFIDNG-DDCIAIKSGSG----NILVENCTCSGG-HG 188 (326)
T ss_dssp EEESEEEEEGGGCTS--SEEEES------------EEEEEEESEEEESS-SESEEESSEEC----EEEEESEEEESS-SE
T ss_pred EEcceEEEecCCCCCcceEEEEe------------eeEEEEEEeecccc-cCccccccccc----ceEEEeEEEecc-cc
Confidence 999999986 468888876 89999999999988 99999997543 999999999765 88
Q ss_pred EEEEecCCCC--eeEEEEEEEceEEcCcceeEEEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeeeceeEEEEcc-C--
Q 012308 316 IRIKTSPGRG--GYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGI-E-- 390 (466)
Q Consensus 316 i~I~s~~g~~--g~v~nI~~~ni~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~~~~~~i~g~-~-- 390 (466)
+.|++....+ ..|+||+|+|+++.+..++++|+... .+.+.|+||+|+||++++...|+.+... .
T Consensus 189 isiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~----------~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~ 258 (326)
T PF00295_consen 189 ISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP----------GGGGYVSNITFENITMENVKYPIFIDQDYRDG 258 (326)
T ss_dssp EEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET----------TTSEEEEEEEEEEEEEEEESEEEEEEEEECTT
T ss_pred ceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec----------ccceEEeceEEEEEEecCCceEEEEEeccccc
Confidence 9999975322 36999999999999999999999742 2335899999999999999888766431 1
Q ss_pred --------CCCeeeEEEEeEEEEcCC
Q 012308 391 --------GDTFRYICLSNIKLNGVS 408 (466)
Q Consensus 391 --------~~~~~~I~~~Ni~i~~~~ 408 (466)
...++||+|+||+.+...
T Consensus 259 ~~~~~~~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 259 GPCGKPPSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp EESSCSSSSSEEEEEEEEEEEEEEST
T ss_pred cccCcccCCceEEEEEEEeeEEEecc
Confidence 235999999999998854
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.81 E-value=7.4e-18 Score=170.28 Aligned_cols=270 Identities=19% Similarity=0.271 Sum_probs=160.3
Q ss_pred CcEEEecCCcceEee---EEeecCc-eEEecCCcEEecCCCCCCCCCCCCCCCCCcccccCCCcceeeEEEecceeeEEe
Q 012308 77 GAKLFVPAGQWLTGS---FDLISHL-TLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVIT 152 (466)
Q Consensus 77 g~tV~iP~G~Y~~~~---l~l~s~~-tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~nv~I~ 152 (466)
..+|||+||+|.++. +.|++++ ++||++||.+++. +.+....+|+.|+
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGA----------------------------f~~~~~~~nv~i~ 283 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGA----------------------------FEYTDTQQNVKIT 283 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES-----------------------------EEE---SSEEEEE
T ss_pred cceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEE----------------------------EEEccCCceEEEE
Confidence 369999999999984 8999985 9999999998864 1222578999999
Q ss_pred CcceeeeCCcchhhhhhcCC------CCCC--CCCeeEEE---EeecceEEeeEEEecCCceEEEEeccc----cEEEEe
Q 012308 153 GDNGTIDGQGSIWWEWFRNG------TLDY--TRPHLVEL---MNSTGVIISNLTFLNPPFWTIHPVYCS----HVKVQN 217 (466)
Q Consensus 153 G~~G~IdG~G~~~w~~~~~~------~~~~--~rp~~i~~---~~~~nv~I~~v~i~ns~~~~i~~~~~~----nv~i~~ 217 (466)
|+ |+++|....|....... .... ..-+++.+ ..+.++.++|++|.++|+|.+.+.+.. +..|+|
T Consensus 284 G~-GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~n 362 (582)
T PF03718_consen 284 GR-GVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISN 362 (582)
T ss_dssp SS-SEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEE
T ss_pred ee-EEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeec
Confidence 98 99999876653211110 0001 11134543 445689999999999999999998655 489999
Q ss_pred EEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCC-CCeEEEceecC
Q 012308 218 VTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKL-GAGIAIGSEMS 296 (466)
Q Consensus 218 ~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-~~gi~Igs~~~ 296 (466)
.++...+ ..++|||.+. ++-+|+||++++.||+|.+. -+++.|+||+++... +.-|.+|.. .
T Consensus 363 yKqVGaW-~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlY-------------hS~v~v~~~ViWk~~Ngpiiq~GW~-p 425 (582)
T PF03718_consen 363 YKQVGAW-YFQTDGIELY--PNSTIRDCFIHVNDDAIKLY-------------HSNVSVSNTVIWKNENGPIIQWGWT-P 425 (582)
T ss_dssp EEEE----CTT----B----TT-EEEEEEEEESS-SEE---------------STTEEEEEEEEEE-SSS-SEE--CS--
T ss_pred eeeeeeE-EeccCCcccc--CCCeeeeeEEEecCchhhee-------------ecCcceeeeEEEecCCCCeEEeecc-c
Confidence 9999866 4689999985 77888999999999998554 489999999998752 233555543 3
Q ss_pred CcEEEEEEEeEEEEcCc---------eeEEEEecC----CC------CeeEEEEEEEceEEcCcc-eeEEEeeecCCCCC
Q 012308 297 GGVSEVHAENLYFFNSV---------RGIRIKTSP----GR------GGYVRNISISNVTLNHVD-VAIIFTGHFGEHPD 356 (466)
Q Consensus 297 ~~v~nI~i~n~~i~~~~---------~Gi~I~s~~----g~------~g~v~nI~~~ni~i~~~~-~~i~i~~~y~~~~~ 356 (466)
..+.||.|+|+.++.+. .+|.-.+.. +. .-.|++++|+|+++++.- ..++|..
T Consensus 426 r~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~p------- 498 (582)
T PF03718_consen 426 RNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYP------- 498 (582)
T ss_dssp --EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE---------
T ss_pred cccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEee-------
Confidence 46999999999998762 344333211 11 135899999999999854 4455542
Q ss_pred CCCCCCCCCeEEeEEEEEEEEeeec-------ee-E-EEEcc---CCCCeeeEEEEeEEEEc
Q 012308 357 DSYDPSALPIIERITIKNVIGENVK-------MA-G-QLEGI---EGDTFRYICLSNIKLNG 406 (466)
Q Consensus 357 ~~~~~~~~~~v~nIt~~nI~~~~~~-------~~-~-~i~g~---~~~~~~~I~~~Ni~i~~ 406 (466)
....+|+.++|+....-. +. . ...+. ......+|.|+|.++.+
T Consensus 499 -------lqn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg 553 (582)
T PF03718_consen 499 -------LQNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGG 553 (582)
T ss_dssp -------SEEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETT
T ss_pred -------cCCCcceEEEEeecccccCcccccceeeccccccccccccccccceEEEeEEECC
Confidence 224667777777766211 10 1 11111 12358999999999976
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.69 E-value=1e-14 Score=144.82 Aligned_cols=189 Identities=18% Similarity=0.219 Sum_probs=103.3
Q ss_pred HHHHHHHhhccccCCCcEEEecCCcceE-eeEEee-cCceEEecCC--cEEecCCCCCCCCCCCCCCCCCcccccCCCcc
Q 012308 62 FQNAIFYLNSFADKGGAKLFVPAGQWLT-GSFDLI-SHLTLWLDKD--AVILGSTNSDTWPVIDPLPSYGRGRELPGGRH 137 (466)
Q Consensus 62 iq~Ai~~a~~~~~~gg~tV~iP~G~Y~~-~~l~l~-s~~tL~l~~g--a~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 137 (466)
||+|+++| ++|.||+||+|+|.+ ++|.+. ++++|..+.. ++|.+..... .+
T Consensus 1 iQ~Ai~~A-----~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~------------~~-------- 55 (314)
T TIGR03805 1 LQEALIAA-----QPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVG------------GA-------- 55 (314)
T ss_pred CHhHHhhC-----CCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCC------------CC--------
Confidence 69999987 568999999999986 588886 7788776532 3333321100 00
Q ss_pred eeeEEEecceeeEEeCcceeeeCCcchhhhhhcCCCCCCCCCeeEEEEeecceEEeeEEEec-------CCceEEEEecc
Q 012308 138 RSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLN-------PPFWTIHPVYC 210 (466)
Q Consensus 138 ~~li~~~~~~nv~I~G~~G~IdG~G~~~w~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~n-------s~~~~i~~~~~ 210 (466)
.. + ....++|+|+|. +|...+ ...|.+..+++++|+++++.. ...+++.+..|
T Consensus 56 ~~-i-~v~a~~VtI~~l--tI~~~~----------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s 115 (314)
T TIGR03805 56 EG-L-LVTSDDVTLSDL--AVENTK----------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVES 115 (314)
T ss_pred ce-E-EEEeCCeEEEee--EEEcCC----------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEecc
Confidence 01 1 112455555552 332111 124555566666666666541 23455666666
Q ss_pred ccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEE
Q 012308 211 SHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIA 290 (466)
Q Consensus 211 ~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~ 290 (466)
++++|+++++.... .+||.+..|++++|++++++....||.+.. +.++.|+++++.+. ..||.
T Consensus 116 ~~v~I~~n~i~g~~----d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~------------S~~~~v~~N~~~~N-~~Gi~ 178 (314)
T TIGR03805 116 TNVLVEDSYVRGAS----DAGIYVGQSQNIVVRNNVAEENVAGIEIEN------------SQNADVYNNIATNN-TGGIL 178 (314)
T ss_pred CCEEEECCEEECCC----cccEEECCCCCeEEECCEEccCcceEEEEe------------cCCcEEECCEEecc-ceeEE
Confidence 66666666665432 235666666666666666665555555543 45566666666554 45555
Q ss_pred EceecC---CcEEEEEEEeEEEEcC
Q 012308 291 IGSEMS---GGVSEVHAENLYFFNS 312 (466)
Q Consensus 291 Igs~~~---~~v~nI~i~n~~i~~~ 312 (466)
+-.... ...++++|+++.+.+.
T Consensus 179 v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 179 VFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred EeecCCCCcCCccceEEECCEEECC
Confidence 532211 1245566666666543
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=6e-13 Score=138.29 Aligned_cols=213 Identities=19% Similarity=0.253 Sum_probs=154.8
Q ss_pred ceeeEEEecceeeEEeCcceeeeCCcc--hhhhhhcC---------CCCCCCCCeeEEEEeecceEEeeEEEecCCceEE
Q 012308 137 HRSLIFGRNLTDVVITGDNGTIDGQGS--IWWEWFRN---------GTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTI 205 (466)
Q Consensus 137 ~~~li~~~~~~nv~I~G~~G~IdG~G~--~~w~~~~~---------~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i 205 (466)
+.+.++.....+..+.+. |.+|+.+. .||..... ....+.++.. .|.. .......+.-+-.+--.+
T Consensus 165 ~~~~~~a~~~~~~~~~~~-g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~-~~~~-~g~~~~~i~~~~~rp~~~ 241 (542)
T COG5434 165 SGPYVYATDSDNAMISGE-GLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDK-WFSG-LGAVETRIGGKGVRPRTV 241 (542)
T ss_pred cCcceeeecccCceeeee-cccccCcccceeccCCceEEEeccceecCccccchhh-hhhc-ccchhhcccccCcCCceE
Confidence 456788888889999996 88887432 23321110 0000111110 0000 001111111111233478
Q ss_pred EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCC----ceEeecCCCCccCcccCCCceeEEEEEEEE
Q 012308 206 HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGD----DLVSIKSGWDEYGISYGRPSTKITIHGLIG 281 (466)
Q Consensus 206 ~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gD----D~iai~sg~~~~g~~~~~~s~nI~I~n~~~ 281 (466)
.+..|+||++++++|.+++ -.++|+..|+|++++|.+|.+.+ |++.+.+ |+|+.|++|+|
T Consensus 242 ~l~~c~NV~~~g~~i~ns~----~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s------------c~NvlI~~~~f 305 (542)
T COG5434 242 VLKGCRNVLLEGLNIKNSP----LWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS------------CSNVLIEGCRF 305 (542)
T ss_pred EEeccceEEEeeeEecCCC----cEEEeeecccCceecceEEECCCCCCCCcccccc------------ceeEEEeccEE
Confidence 8999999999999999976 36799999999999999999843 4666665 99999999999
Q ss_pred ecCCCCeEEEceecC-------CcEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEEEEEceEEcCcceeEEEeeecCCC
Q 012308 282 ETKLGAGIAIGSEMS-------GGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEH 354 (466)
Q Consensus 282 ~~~~~~gi~Igs~~~-------~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI~~~ni~i~~~~~~i~i~~~y~~~ 354 (466)
... +++|++++... +..++|+|+||.|.....++.++++. +|.|+||++||+.|.+...+++|+...+
T Consensus 306 dtg-DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~--~ggv~ni~ved~~~~~~d~GLRikt~~~-- 380 (542)
T COG5434 306 DTG-DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM--GGGVQNITVEDCVMDNTDRGLRIKTNDG-- 380 (542)
T ss_pred ecC-CceEEeecccCCcccccccccccEEEecceecccccceEeeeec--CCceeEEEEEeeeeccCcceeeeeeecc--
Confidence 987 99999998743 23699999999999887888888885 6889999999999999999999997543
Q ss_pred CCCCCCCCCCCeEEeEEEEEEEEeeec
Q 012308 355 PDDSYDPSALPIIERITIKNVIGENVK 381 (466)
Q Consensus 355 ~~~~~~~~~~~~v~nIt~~nI~~~~~~ 381 (466)
+.+.++||+|+++.+.++.
T Consensus 381 --------~gG~v~nI~~~~~~~~nv~ 399 (542)
T COG5434 381 --------RGGGVRNIVFEDNKMRNVK 399 (542)
T ss_pred --------cceeEEEEEEecccccCcc
Confidence 2358999999999998774
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.25 E-value=3.8e-10 Score=112.22 Aligned_cols=164 Identities=21% Similarity=0.239 Sum_probs=127.6
Q ss_pred ceeeEEeCcce----eeeCCcchhhhhhcCCCCCCCCCeeEEEEeecceEEeeEEEecCCceEEEEeccccEEEEeEEEE
Q 012308 146 LTDVVITGDNG----TIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIR 221 (466)
Q Consensus 146 ~~nv~I~G~~G----~IdG~G~~~w~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~ 221 (466)
.++|+|.|. | +||+.++. .....+ +..+++|+|+++++.++..+++.+..|++++|+++++.
T Consensus 31 ~~~Iti~G~-g~~~tvid~~~~~------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~ 96 (314)
T TIGR03805 31 ADGVTIRGA-GMDETILDFSGQV------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVE 96 (314)
T ss_pred CCCeEEEec-CCCccEEecccCC------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEE
Confidence 368999986 4 47776642 112334 44689999999999999999999999999999999997
Q ss_pred cCCC---CCCCCCcCCCCCccEEEEeeEEEc-CCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCC
Q 012308 222 APLD---SPNTDGIDPDSSDDVCIKDCYIST-GDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSG 297 (466)
Q Consensus 222 ~~~~---~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~ 297 (466)
.... ....+||.+..|++++|++|+++. .|++|.++. +++++|+||+++.. ..||.+.
T Consensus 97 ~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~------------s~~~~v~nN~~~~n-~~GI~i~----- 158 (314)
T TIGR03805 97 WTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ------------SQNIVVRNNVAEEN-VAGIEIE----- 158 (314)
T ss_pred eccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC------------CCCeEEECCEEccC-cceEEEE-----
Confidence 4321 134689999999999999999998 455888875 79999999999987 7888885
Q ss_pred cEEEEEEEeEEEEcCceeEEEEecCCCC-eeEEEEEEEceEEcCc
Q 012308 298 GVSEVHAENLYFFNSVRGIRIKTSPGRG-GYVRNISISNVTLNHV 341 (466)
Q Consensus 298 ~v~nI~i~n~~i~~~~~Gi~I~s~~g~~-g~v~nI~~~ni~i~~~ 341 (466)
...++.|+++++.+...|+.+-..++.. -.-+++++++.++.+.
T Consensus 159 ~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 159 NSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred ecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 3567899999999988999996554321 1236788887777654
No 22
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.86 E-value=9.9e-08 Score=96.69 Aligned_cols=144 Identities=17% Similarity=0.095 Sum_probs=111.0
Q ss_pred eeEEEEeecceEEeeEEEecCC------ceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEc-CCc
Q 012308 180 HLVELMNSTGVIISNLTFLNPP------FWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYIST-GDD 252 (466)
Q Consensus 180 ~~i~~~~~~nv~I~~v~i~ns~------~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD 252 (466)
.++.-...+||+|+|++|.++. ...|++..|++++|++++|.++. .-||.+..|+ ..|.++.|.. .+.
T Consensus 107 ~lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~ 181 (455)
T TIGR03808 107 SLLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVT 181 (455)
T ss_pred eEEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccc
Confidence 3566777999999999999875 24688899999999999999853 3689999998 7777777776 566
Q ss_pred eEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEcee------------------------c-CC------cEEE
Q 012308 253 LVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSE------------------------M-SG------GVSE 301 (466)
Q Consensus 253 ~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~------------------------~-~~------~v~n 301 (466)
.|.+.. +++..|+++++.+..++||.|... . .| ...+
T Consensus 182 ~I~lw~------------S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~ 249 (455)
T TIGR03808 182 AIVSFD------------ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGN 249 (455)
T ss_pred eEEEec------------cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCC
Confidence 655443 899999999999887778877522 0 01 2567
Q ss_pred EEEEeEEEEcCc-eeEEEEecCCCCeeEEEEEEEceEEcCcce-eEEE
Q 012308 302 VHAENLYFFNSV-RGIRIKTSPGRGGYVRNISISNVTLNHVDV-AIIF 347 (466)
Q Consensus 302 I~i~n~~i~~~~-~Gi~I~s~~g~~g~v~nI~~~ni~i~~~~~-~i~i 347 (466)
++|+++++.++. .||++.+. +|+.|++.++.+..+ +++.
T Consensus 250 v~V~gN~I~~~r~dgI~~nss-------s~~~i~~N~~~~~R~~alhy 290 (455)
T TIGR03808 250 VIVRGNRIRNCDYSAVRGNSA-------SNIQITGNSVSDVREVALYS 290 (455)
T ss_pred eEEECCEEeccccceEEEEcc-------cCcEEECcEeeeeeeeEEEE
Confidence 899999999998 89988775 567777777777776 6653
No 23
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.73 E-value=8.1e-08 Score=85.01 Aligned_cols=141 Identities=27% Similarity=0.273 Sum_probs=101.9
Q ss_pred EEEEeecceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCC
Q 012308 182 VELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWD 261 (466)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~ 261 (466)
|.+....+++|++++|.+....++.+..+..++|++++|.. ...|+++....++++++|.+.....++.+..
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~~--- 74 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVSG--- 74 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECCS---
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEEe---
Confidence 66777888999999999999999999999999999999998 3678999988999999999998765665553
Q ss_pred ccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCc-eeEEEEecCCCCeeEEEEEEEceEEcC
Q 012308 262 EYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSV-RGIRIKTSPGRGGYVRNISISNVTLNH 340 (466)
Q Consensus 262 ~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~-~Gi~I~s~~g~~g~v~nI~~~ni~i~~ 340 (466)
..+++|++|.+....+.||.+.. ...+++|++|+|.+.. .|+.+.... -.+++|+++++.+
T Consensus 75 ---------~~~~~i~~~~i~~~~~~gi~~~~----~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~~ 136 (158)
T PF13229_consen 75 ---------SSNITIENNRIENNGDYGIYISN----SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTISN 136 (158)
T ss_dssp ----------CS-EEES-EEECSSS-SCE-TC----EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEEC
T ss_pred ---------cCCceecCcEEEcCCCccEEEec----cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEEe
Confidence 79999999999987555888863 2567999999999887 788887643 2367788888877
Q ss_pred cc-eeEEEe
Q 012308 341 VD-VAIIFT 348 (466)
Q Consensus 341 ~~-~~i~i~ 348 (466)
.. .+|.+.
T Consensus 137 ~~~~gi~~~ 145 (158)
T PF13229_consen 137 NGGNGIYLI 145 (158)
T ss_dssp ESSEEEE-T
T ss_pred CcceeEEEE
Confidence 64 777654
No 24
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.69 E-value=1.1e-07 Score=89.15 Aligned_cols=126 Identities=16% Similarity=0.236 Sum_probs=87.9
Q ss_pred EEEeecceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCC-----CCCc------CCCCCccEEEEeeEEEcCC
Q 012308 183 ELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPN-----TDGI------DPDSSDDVCIKDCYISTGD 251 (466)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n-----~DGi------~~~~s~nV~I~n~~i~~gD 251 (466)
.|+.|+|++++++++.+++ -.++.|++++++|+.+.+.....+ -|++ .|++++||.|+|+.+.+.|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~---Et~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDAD---ETLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCc---ccCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 3567889999999987775 345567777777777744322111 1222 2456899999999998865
Q ss_pred ceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEE
Q 012308 252 DLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNI 331 (466)
Q Consensus 252 D~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI 331 (466)
+ + |. ++||+|+|.++.+. .+|- ..+|+++.||++.+.+ | --+++|+
T Consensus 170 -A--F---Wn---------~eNVtVyDS~i~GE-----YLgW----~SkNltliNC~I~g~Q-p---------LCY~~~L 215 (277)
T PF12541_consen 170 -A--F---WN---------CENVTVYDSVINGE-----YLGW----NSKNLTLINCTIEGTQ-P---------LCYCDNL 215 (277)
T ss_pred -c--c---cc---------CCceEEEcceEeee-----EEEE----EcCCeEEEEeEEeccC-c---------cEeecce
Confidence 2 2 22 89999999998753 2332 3679999999998773 1 3678899
Q ss_pred EEEceEEcCcceeE
Q 012308 332 SISNVTLNHVDVAI 345 (466)
Q Consensus 332 ~~~ni~i~~~~~~i 345 (466)
+.+|++|.++..++
T Consensus 216 ~l~nC~~~~tdlaF 229 (277)
T PF12541_consen 216 VLENCTMIDTDLAF 229 (277)
T ss_pred EEeCcEeecceeee
Confidence 99999999876554
No 25
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.62 E-value=4.5e-06 Score=80.79 Aligned_cols=158 Identities=22% Similarity=0.248 Sum_probs=112.8
Q ss_pred CCCcEEEecCCcceEeeEEeecCceEEecCCcEEecCCCCCCCCCCCCCCCCCcccccCCCcceeeEEEecceeeEEeCc
Q 012308 75 KGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGD 154 (466)
Q Consensus 75 ~gg~tV~iP~G~Y~~~~l~l~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~nv~I~G~ 154 (466)
++|..+-+. |+|. +.+.+...+||+.+.+|++-+... | +.+. ....+++++|
T Consensus 32 ~pgd~~~i~-g~~~-g~~vInr~l~l~ge~ga~l~g~g~---------------G---------~~vt-v~aP~~~v~G- 83 (408)
T COG3420 32 KPGDYYGIS-GRYA-GNFVINRALTLRGENGAVLDGGGK---------------G---------SYVT-VAAPDVIVEG- 83 (408)
T ss_pred CCCcEEEEe-eeec-ccEEEccceeeccccccEEecCCc---------------c---------cEEE-EeCCCceeee-
Confidence 677788888 8885 788888888999999999865422 1 1222 2456777888
Q ss_pred ceeeeCCcchhhhhhcCCCCCCCCCeeEEEEeecceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCC---CCCCCC
Q 012308 155 NGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLD---SPNTDG 231 (466)
Q Consensus 155 ~G~IdG~G~~~w~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~---~~n~DG 231 (466)
-+..+.|..--++ ....+.-...+.-.|+...+... .+++.+..+.++.|++.+|....+ ....+|
T Consensus 84 -l~vr~sg~~lp~m---------~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnG 152 (408)
T COG3420 84 -LTVRGSGRSLPAM---------DAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNG 152 (408)
T ss_pred -EEEecCCCCcccc---------cceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCc
Confidence 5666666432111 11223334455666777766654 478999999999999999998654 335789
Q ss_pred cCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEec
Q 012308 232 IDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGET 283 (466)
Q Consensus 232 i~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~ 283 (466)
|++.+++++.|....+.-+.|||.... +++-.|+++.++.
T Consensus 153 I~vyNa~~a~V~~ndisy~rDgIy~~~------------S~~~~~~gnr~~~ 192 (408)
T COG3420 153 IYVYNAPGALVVGNDISYGRDGIYSDT------------SQHNVFKGNRFRD 192 (408)
T ss_pred eEEEcCCCcEEEcCccccccceEEEcc------------cccceecccchhh
Confidence 999999999999999999999998876 5666666666653
No 26
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.61 E-value=4.5e-07 Score=85.11 Aligned_cols=103 Identities=19% Similarity=0.242 Sum_probs=80.8
Q ss_pred EEEEeecceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCC
Q 012308 182 VELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWD 261 (466)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~ 261 (466)
..+++++|+.|+++.+.. .-.|++|+||.|+|.++... |. |+.|+||+|.|++|..--
T Consensus 131 Yf~m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~sK------DA--FWn~eNVtVyDS~i~GEY---------- 188 (277)
T PF12541_consen 131 YFFMNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLDSK------DA--FWNCENVTVYDSVINGEY---------- 188 (277)
T ss_pred EeeeeccceEEeceEEeC----CEEeeceeeEEEEccEEecc------cc--cccCCceEEEcceEeeeE----------
Confidence 456678888888888754 25688999999999999874 33 478999999999997521
Q ss_pred ccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCceeEEEEe
Q 012308 262 EYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKT 320 (466)
Q Consensus 262 ~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi~I~s 320 (466)
.+..++|+++.||++.+. +|+. +++|++.+||+|.+++.++...+
T Consensus 189 -----LgW~SkNltliNC~I~g~--QpLC-------Y~~~L~l~nC~~~~tdlaFEyS~ 233 (277)
T PF12541_consen 189 -----LGWNSKNLTLINCTIEGT--QPLC-------YCDNLVLENCTMIDTDLAFEYSN 233 (277)
T ss_pred -----EEEEcCCeEEEEeEEecc--CccE-------eecceEEeCcEeecceeeeeecc
Confidence 122389999999999975 6666 47899999999999877766633
No 27
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.58 E-value=2.5e-06 Score=81.07 Aligned_cols=170 Identities=22% Similarity=0.218 Sum_probs=96.5
Q ss_pred HHHHHHHHHhhccccCCCcEEEecCCcceEe-----eEEeecCceEEecCCcEEecCCCCCCCCCCCCCCCCCcccccCC
Q 012308 60 KAFQNAIFYLNSFADKGGAKLFVPAGQWLTG-----SFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPG 134 (466)
Q Consensus 60 ~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~-----~l~l~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~ 134 (466)
.-|++|++.| ..|.+|++-+|+|.-. ||.|+++++|..++... |
T Consensus 16 ~Ti~~A~~~a-----~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~k---------------------G----- 64 (246)
T PF07602_consen 16 KTITKALQAA-----QPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNK---------------------G----- 64 (246)
T ss_pred HHHHHHHHhC-----CCCCEEEECCceeccccCCcccEEecCCeEEeecccCC---------------------C-----
Confidence 4689999987 6788999999999732 57777777776531110 0
Q ss_pred CcceeeEEEecceeeEEeCcc-e-eeeCCcchhhhhhcCCCCCCCCCeeEEEEeecceEEeeEEEecC---CceEEEEec
Q 012308 135 GRHRSLIFGRNLTDVVITGDN-G-TIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNP---PFWTIHPVY 209 (466)
Q Consensus 135 ~~~~~li~~~~~~nv~I~G~~-G-~IdG~G~~~w~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns---~~~~i~~~~ 209 (466)
..++.+.|.. + +|+|.+... ....+.+....+.+|++++|.|+ ...++.+..
T Consensus 65 -----------~~~il~~g~~~~~~I~g~~~~~------------~~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Ies 121 (246)
T PF07602_consen 65 -----------QIDILITGGGTGPTISGGGPDL------------SGQNVTIILANNATISGVTITNPNIARGTGIWIES 121 (246)
T ss_pred -----------cceEEecCCceEEeEeccCccc------------cceeEEEEecCCCEEEEEEEEcCCCCcceEEEEec
Confidence 0122233210 0 233333110 02345566677778888888776 223444433
Q ss_pred cccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeE
Q 012308 210 CSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGI 289 (466)
Q Consensus 210 ~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi 289 (466)
+ +.+|+|++|... ..++|.+... .......++.|+++.+... ..||
T Consensus 122 s-~~tI~Nntf~~~--------------------------~~~GI~v~g~------~~~~~i~~~vI~GN~~~~~-~~Gi 167 (246)
T PF07602_consen 122 S-SPTIANNTFTNN--------------------------GREGIFVTGT------SANPGINGNVISGNSIYFN-KTGI 167 (246)
T ss_pred C-CcEEEeeEEECC--------------------------ccccEEEEee------ecCCcccceEeecceEEec-CcCe
Confidence 3 555555555442 2334433221 0012367778888888876 6788
Q ss_pred EEceecCCcEEEEEEEeEEEEcCceeEEEE
Q 012308 290 AIGSEMSGGVSEVHAENLYFFNSVRGIRIK 319 (466)
Q Consensus 290 ~Igs~~~~~v~nI~i~n~~i~~~~~Gi~I~ 319 (466)
++.....+ +. -.|+|+.+.+...||.+.
T Consensus 168 ~i~~~~~~-~~-n~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 168 SISDNAAP-VE-NKIENNIIENNNIGIVAI 195 (246)
T ss_pred EEEcccCC-cc-ceeeccEEEeCCcCeEee
Confidence 88643333 33 355888888776787754
No 28
>PLN02480 Probable pectinesterase
Probab=98.56 E-value=2e-05 Score=78.78 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhhccccCCC---cEEEecCCcceEeeEEee---cCceEEe
Q 012308 58 NTKAFQNAIFYLNSFADKGG---AKLFVPAGQWLTGSFDLI---SHLTLWL 102 (466)
Q Consensus 58 dT~Aiq~Ai~~a~~~~~~gg---~tV~iP~G~Y~~~~l~l~---s~~tL~l 102 (466)
|-.-||+||+++- .+. .+|+|.+|+|. +.+.|+ .+++|..
T Consensus 59 ~f~TIQ~AIdaap----~~~~~~~~I~Ik~GvY~-E~V~I~~~kp~ItL~G 104 (343)
T PLN02480 59 DFTSVQSAIDAVP----VGNSEWIIVHLRKGVYR-EKVHIPENKPFIFMRG 104 (343)
T ss_pred CcccHHHHHhhCc----cCCCceEEEEEcCcEEE-EEEEECCCCceEEEEe
Confidence 4667999999883 322 25889999998 677773 3455544
No 29
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.52 E-value=1e-06 Score=77.80 Aligned_cols=152 Identities=25% Similarity=0.234 Sum_probs=100.1
Q ss_pred EEecceeeEEeCcceeeeCCcchhhhhhcCCCCCCCCCeeEEEEeecceEEeeEEEecCCceEEEEeccccEEEEeEEEE
Q 012308 142 FGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIR 221 (466)
Q Consensus 142 ~~~~~~nv~I~G~~G~IdG~G~~~w~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~ 221 (466)
...+..+++|.+ .+|... ....|.+..+..++|++.+|.+ ...++.+....+++++++++.
T Consensus 4 ~i~~~~~~~i~~--~~i~~~----------------~~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~ 64 (158)
T PF13229_consen 4 SINNGSNVTIRN--CTISNN----------------GGDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTIS 64 (158)
T ss_dssp EETTCEC-EEES--EEEESS----------------SSECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEE
T ss_pred EEECCcCeEEee--eEEEeC----------------CCeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEE
Confidence 445556677777 555543 2346889999999999999999 667899999999999999998
Q ss_pred cCCCCCCCCCcCCCCCccEEEEeeEEEcC-CceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEE
Q 012308 222 APLDSPNTDGIDPDSSDDVCIKDCYISTG-DDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVS 300 (466)
Q Consensus 222 ~~~~~~n~DGi~~~~s~nV~I~n~~i~~g-DD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~ 300 (466)
... .|+.+..+.+++|++|.+... +.+|.+.. ...+++|++|++......|+.+.... -.
T Consensus 65 ~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~-----------~~~~~~i~~n~~~~~~~~gi~~~~~~---~~ 125 (158)
T PF13229_consen 65 DNG-----SGIYVSGSSNITIENNRIENNGDYGIYISN-----------SSSNVTIENNTIHNNGGSGIYLEGGS---SP 125 (158)
T ss_dssp S-S-----EEEECCS-CS-EEES-EEECSSS-SCE-TC-----------EECS-EEES-EEECCTTSSCEEEECC-----
T ss_pred Ecc-----ceEEEEecCCceecCcEEEcCCCccEEEec-----------cCCCEEEEeEEEEeCcceeEEEECCC---CC
Confidence 743 678888999999999999984 44777753 15889999999998756888886432 35
Q ss_pred EEEEEeEEEEcCc-eeEEEEecCCCCeeEEEEEEEceE
Q 012308 301 EVHAENLYFFNSV-RGIRIKTSPGRGGYVRNISISNVT 337 (466)
Q Consensus 301 nI~i~n~~i~~~~-~Gi~I~s~~g~~g~v~nI~~~ni~ 337 (466)
+++|++|++.+.. .|+.+.... + ++++.+.+
T Consensus 126 ~~~i~~n~i~~~~~~gi~~~~~~---~---~~~v~~n~ 157 (158)
T PF13229_consen 126 NVTIENNTISNNGGNGIYLISGS---S---NCTVTNNT 157 (158)
T ss_dssp S-EEECEEEECESSEEEE-TT-S---S-----EEES-E
T ss_pred eEEEEEEEEEeCcceeEEEECCC---C---eEEEECCC
Confidence 7889999999876 788775542 1 55555554
No 30
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.46 E-value=2.5e-05 Score=74.16 Aligned_cols=226 Identities=22% Similarity=0.279 Sum_probs=114.9
Q ss_pred CCeeEEEeecCccCCCcchhHHHHHHHHHHhhccccCCCcEEEecCCcc--eEe-eEEeecCceEEecCCcEEecCCCCC
Q 012308 39 RPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQW--LTG-SFDLISHLTLWLDKDAVILGSTNSD 115 (466)
Q Consensus 39 ~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y--~~~-~l~l~s~~tL~l~~ga~i~~~~~~~ 115 (466)
+...+|+.||-.. |=-++|..|+. .+.||++|+|-- .+. .+.++.+-||.++ +.|.+.
T Consensus 31 ~~~~vni~dy~~~-----dwiasfkqaf~--------e~qtvvvpagl~cenint~ifip~gktl~v~--g~l~gn---- 91 (464)
T PRK10123 31 ARQSVNINDYNPH-----DWIASFKQAFS--------EGQTVVVPAGLVCDNINTGIFIPPGKTLHIL--GSLRGN---- 91 (464)
T ss_pred CCceeehhhcCcc-----cHHHHHHHHhc--------cCcEEEecCccEecccccceEeCCCCeEEEE--EEeecC----
Confidence 6678999999764 55678888864 457999999953 233 6777777777764 223222
Q ss_pred CCCCCCCCCCCCcccccCCCcceeeEEEecceeeEEeCcceeeeCCcchhhhhhcCCCCCCCCCeeEEE-EeecceEEee
Q 012308 116 TWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVEL-MNSTGVIISN 194 (466)
Q Consensus 116 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~G~~~w~~~~~~~~~~~rp~~i~~-~~~~nv~I~~ 194 (466)
|+|+ ++..+++ .+.|.. + .+-+.+.+ ...++..|++
T Consensus 92 -----------grgr---------fvlqdg~---qv~ge~------~--------------g~~hnitldvrgsdc~ikg 128 (464)
T PRK10123 92 -----------GRGR---------FVLQDGS---QVTGEE------G--------------GSMHNITLDVRGSDCTIKG 128 (464)
T ss_pred -----------Ccee---------EEEecCC---EeecCC------C--------------ceeeeEEEeeccCceEEee
Confidence 1221 2223333 233420 0 01111111 1234555555
Q ss_pred EEEecC-CceEEEEec-----cccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEc-CCceEeecCCCCccCccc
Q 012308 195 LTFLNP-PFWTIHPVY-----CSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYIST-GDDLVSIKSGWDEYGISY 267 (466)
Q Consensus 195 v~i~ns-~~~~i~~~~-----~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~sg~~~~g~~~ 267 (466)
+....- |...|.+.+ -+|.+|+++++....+.--..|+|-. -..++|.||.|.. ..|+|.-.-
T Consensus 129 iamsgfgpvtqiyiggk~prvmrnl~id~itv~~anyailrqgfhnq-~dgaritn~rfs~lqgdaiewnv--------- 198 (464)
T PRK10123 129 LAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQ-IIGANITNCKFSDLQGDAIEWNV--------- 198 (464)
T ss_pred eeecccCceeEEEEcCCCchhhhccEEccEEEeeccHHHHhhhhhhc-cccceeeccccccccCceEEEEE---------
Confidence 554321 122333322 24667777777654332234455532 3567788888876 445542111
Q ss_pred CCCceeEEEEEEEEe-----cC-CCCeEEEcee---c------CCcEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEEE
Q 012308 268 GRPSTKITIHGLIGE-----TK-LGAGIAIGSE---M------SGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNIS 332 (466)
Q Consensus 268 ~~~s~nI~I~n~~~~-----~~-~~~gi~Igs~---~------~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI~ 332 (466)
.-.-+||.|++-.+. ++ ..-||-||-. . ...++|..+.|++-.++..=+.+.. |..=.|+||.
T Consensus 199 aindr~ilisdhvie~inctngkinwgigiglagstydn~ype~q~vknfvvanitgs~crqlvhven--gkhfvirnvk 276 (464)
T PRK10123 199 AINDRDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVEN--GKHFVIRNIK 276 (464)
T ss_pred EecccceeeehheheeecccCCcccceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEecC--CcEEEEEeee
Confidence 001355655543332 21 1234555432 1 1237788888887777654444432 2233456666
Q ss_pred EEceEE
Q 012308 333 ISNVTL 338 (466)
Q Consensus 333 ~~ni~i 338 (466)
-+||+-
T Consensus 277 aknitp 282 (464)
T PRK10123 277 AKNITP 282 (464)
T ss_pred ccccCC
Confidence 666653
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.43 E-value=3.7e-06 Score=80.44 Aligned_cols=135 Identities=26% Similarity=0.186 Sum_probs=86.2
Q ss_pred eEEEEeecceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCC
Q 012308 181 LVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGW 260 (466)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~ 260 (466)
.+.+..+++..|++.++.+.. .++.+..+.+++|++++|... ..||++..+++++|+++.+.....||.+..
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~-- 86 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG-- 86 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc--
Confidence 366666677777777766543 456677777777777777653 456777777777777777777556776665
Q ss_pred CccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEEEEEceEEcC
Q 012308 261 DEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNH 340 (466)
Q Consensus 261 ~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI~~~ni~i~~ 340 (466)
+.+.+|+++++... ..||.+. ...+.+|+++++.+...||.+... .+.++++.++.+
T Consensus 87 ----------s~~~~I~~N~i~~n-~~GI~l~-----~s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~ 143 (236)
T PF05048_consen 87 ----------SSNNTISNNTISNN-GYGIYLY-----GSSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISN 143 (236)
T ss_pred ----------CCCcEEECCEecCC-CceEEEe-----eCCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeC
Confidence 34447777777665 4466554 234466777777766677776542 345555666665
Q ss_pred c-ceeEE
Q 012308 341 V-DVAII 346 (466)
Q Consensus 341 ~-~~~i~ 346 (466)
. ..||.
T Consensus 144 n~~~Gi~ 150 (236)
T PF05048_consen 144 NTDYGIY 150 (236)
T ss_pred CCccceE
Confidence 5 56665
No 32
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.40 E-value=0.00029 Score=72.69 Aligned_cols=263 Identities=15% Similarity=0.164 Sum_probs=133.6
Q ss_pred CCCcEEEecCCcceEeeEEee-cCceEEecCCcEEecCCCCCCCCCCCCCCCCC---cccccCC--CcceeeEEEeccee
Q 012308 75 KGGAKLFVPAGQWLTGSFDLI-SHLTLWLDKDAVILGSTNSDTWPVIDPLPSYG---RGRELPG--GRHRSLIFGRNLTD 148 (466)
Q Consensus 75 ~gg~tV~iP~G~Y~~~~l~l~-s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~---~g~~~~~--~~~~~li~~~~~~n 148 (466)
+...+|||.||.|.-|.+... ..-.+++-.-++|.+..-. |.. ++..+|. .....+. -+....+...+.++
T Consensus 254 sn~~~VYlApGAyVkGAf~~~~~~~nv~i~G~GVLSGe~Yv--y~A-~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~ 330 (582)
T PF03718_consen 254 SNTKWVYLAPGAYVKGAFEYTDTQQNVKITGRGVLSGEQYV--YEA-DTEESYLHLSGAVKCHRESLKMLWHISANGGQT 330 (582)
T ss_dssp TT--EEEE-TTEEEES-EEE---SSEEEEESSSEEE-TTS---TTB-BCCCTTSB-SSC---TTTB--SEEECS-SSSEE
T ss_pred CCccEEEEcCCcEEEEEEEEccCCceEEEEeeEEEcCccee--Eec-cCCCCccccccccccchhhhhhhhhhccCCcce
Confidence 456799999999998888766 4455655556777654211 110 0000010 0000000 01112223456778
Q ss_pred eEEeCcceeeeCCcchhhhhhcCCCCCCCCCeeEEEEeec----ceEEeeEEEecCCceEEE-EeccccEEEEeEEEEcC
Q 012308 149 VVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNST----GVIISNLTFLNPPFWTIH-PVYCSHVKVQNVTIRAP 223 (466)
Q Consensus 149 v~I~G~~G~IdG~G~~~w~~~~~~~~~~~rp~~i~~~~~~----nv~I~~v~i~ns~~~~i~-~~~~~nv~i~~~~i~~~ 223 (466)
+.+.| -+|.- ..+ +.+.+.+-. +..|++.+...+.+|.-+ +.-+.+-+|+||-+..
T Consensus 331 ~~~~G--iTI~~--pP~--------------~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~- 391 (582)
T PF03718_consen 331 LTCEG--ITIND--PPF--------------HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV- 391 (582)
T ss_dssp EEEES---EEE----SS---------------SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEEEEEE-
T ss_pred EEEEe--eEecC--CCc--------------ceEEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeeeEEEe-
Confidence 88888 46642 112 235555444 478999999877655322 3345788999999997
Q ss_pred CCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecC--------CCCeEEEcee-
Q 012308 224 LDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETK--------LGAGIAIGSE- 294 (466)
Q Consensus 224 ~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~--------~~~gi~Igs~- 294 (466)
|.|+|.+.. +++.|++|++.....+=.+.-||.. +..+|+.|+|+.+... ...+|---+.
T Consensus 392 ----nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~p------r~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~ 460 (582)
T PF03718_consen 392 ----NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTP------RNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPF 460 (582)
T ss_dssp ----SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---------EEEEEEEEEEEEE---SSGGCTTT-ECEEE--B
T ss_pred ----cCchhheee-cCcceeeeEEEecCCCCeEEeeccc------cccCceEEeeeEEEeeeeecccCCCCceeEecccc
Confidence 468887765 7999999999984443335556653 3378999999988543 1234432221
Q ss_pred c-------C----CcEEEEEEEeEEEEcCc-eeEEEEecCCCCeeEEEEEEEceEEc--Ccc----eeEEEeeecCCCCC
Q 012308 295 M-------S----GGVSEVHAENLYFFNSV-RGIRIKTSPGRGGYVRNISISNVTLN--HVD----VAIIFTGHFGEHPD 356 (466)
Q Consensus 295 ~-------~----~~v~nI~i~n~~i~~~~-~Gi~I~s~~g~~g~v~nI~~~ni~i~--~~~----~~i~i~~~y~~~~~ 356 (466)
. . ..+++++|+|+++.+.. .-++|...+ ...|+.++|+.++ +.. .--.++..+..
T Consensus 461 y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plq----n~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~--- 533 (582)
T PF03718_consen 461 YDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQ----NYDNLVIKNVHFESWNGLDITSQVSGLKAYYNM--- 533 (582)
T ss_dssp TTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SE----EEEEEEEEEEEECEET-CGCSTT-EEE---CCT---
T ss_pred cccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecC----CCcceEEEEeecccccCcccccceeeccccccc---
Confidence 1 1 13689999999999976 568887653 4566777777776 211 01122322222
Q ss_pred CCCCCCCCCeEEeEEEEEEEEeee
Q 012308 357 DSYDPSALPIIERITIKNVIGENV 380 (466)
Q Consensus 357 ~~~~~~~~~~v~nIt~~nI~~~~~ 380 (466)
...+...+.+|.|+|.++-+.
T Consensus 534 ---~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 534 ---ANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp ---TT--B--EEEEEEEEEEETTE
T ss_pred ---cccccccccceEEEeEEECCE
Confidence 112234688999999988654
No 33
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.35 E-value=1.4e-05 Score=76.40 Aligned_cols=115 Identities=26% Similarity=0.161 Sum_probs=100.2
Q ss_pred eEEEEeecceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCC
Q 012308 181 LVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGW 260 (466)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~ 260 (466)
.+.+..+.+++|++.++.+. .+++++..+++++|+++.+... ..||.+..+.+.+|+++.|.....+|.+..
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-- 108 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG-- 108 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEEee--
Confidence 46889999999999999988 7899999999999999999974 489999999888999999999777998876
Q ss_pred CccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcC-ceeEEEE
Q 012308 261 DEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNS-VRGIRIK 319 (466)
Q Consensus 261 ~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~-~~Gi~I~ 319 (466)
+.+.+|+++++... ..||.+.. ..+.+|++++|.+. ..||.+.
T Consensus 109 ----------s~~~~I~~N~i~~~-~~GI~l~~-----s~~n~I~~N~i~~n~~~Gi~~~ 152 (236)
T PF05048_consen 109 ----------SSNNTISNNTISNN-GYGIYLSS-----SSNNTITGNTISNNTDYGIYFL 152 (236)
T ss_pred ----------CCceEEECcEEeCC-CEEEEEEe-----CCCCEEECeEEeCCCccceEEe
Confidence 67889999999855 88998863 36889999999988 7899943
No 34
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=4.8e-05 Score=72.89 Aligned_cols=73 Identities=30% Similarity=0.309 Sum_probs=50.4
Q ss_pred CCCcCC-CCCccEEEEeeEEEc---------CCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecC--
Q 012308 229 TDGIDP-DSSDDVCIKDCYIST---------GDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMS-- 296 (466)
Q Consensus 229 ~DGi~~-~~s~nV~I~n~~i~~---------gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~-- 296 (466)
-|+|.+ ..++|+.|++|++.. +|..+.++-+ +..|+|.+|+|.+. +-++-+|+-..
T Consensus 144 ~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~-----------AnyITiS~n~fhdh-~Kssl~G~sD~~~ 211 (345)
T COG3866 144 YDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKD-----------ANYITISYNKFHDH-DKSSLLGSSDSSN 211 (345)
T ss_pred CCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccC-----------CcEEEEEeeeeecC-CeeeeeccCCccc
Confidence 466776 567788888888775 2333455543 78888999988876 66677776432
Q ss_pred --CcEEEEEEEeEEEEcCc
Q 012308 297 --GGVSEVHAENLYFFNSV 313 (466)
Q Consensus 297 --~~v~nI~i~n~~i~~~~ 313 (466)
++-.+|++.+|.|.+..
T Consensus 212 ~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 212 YDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred ccCCceeEEEecccccccc
Confidence 34567888888888763
No 35
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.19 E-value=0.00031 Score=71.56 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhhccccCCCcEEEecCCcce
Q 012308 58 NTKAFQNAIFYLNSFADKGGAKLFVPAGQWL 88 (466)
Q Consensus 58 dT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~ 88 (466)
+.++||+||++| .+|.+|+++.|+|.
T Consensus 3 s~~~lq~Ai~~a-----~pGD~I~L~~Gty~ 28 (425)
T PF14592_consen 3 SVAELQSAIDNA-----KPGDTIVLADGTYK 28 (425)
T ss_dssp SHHHHHHHHHH-------TT-EEEE-SEEEE
T ss_pred CHHHHHHHHHhC-----CCCCEEEECCceee
Confidence 568999999987 68999999999997
No 36
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=6.1e-05 Score=72.22 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=18.5
Q ss_pred EEEEeecceEEeeEEEecCC-----ceEEEE-eccccEEEEeEEEEc
Q 012308 182 VELMNSTGVIISNLTFLNPP-----FWTIHP-VYCSHVKVQNVTIRA 222 (466)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns~-----~~~i~~-~~~~nv~i~~~~i~~ 222 (466)
+.+.+..||.|++++|...+ +..|.+ ...+|+.|++|++..
T Consensus 119 l~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~ 165 (345)
T COG3866 119 LKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSG 165 (345)
T ss_pred EEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecc
Confidence 44444445555555544433 223333 444445555555444
No 37
>PLN02682 pectinesterase family protein
Probab=98.18 E-value=0.0011 Score=66.84 Aligned_cols=44 Identities=20% Similarity=0.122 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhhccccCCCcEEEecCCcceEeeEEe---ecCceEEec
Q 012308 58 NTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDL---ISHLTLWLD 103 (466)
Q Consensus 58 dT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~~l~l---~s~~tL~l~ 103 (466)
|-.-||+||+++-.. ....-+|+|.+|+|. ..+.| +.+++|+.+
T Consensus 81 df~TIQ~AIdavP~~-~~~r~vI~Ik~G~Y~-EkV~Ip~~k~~Itl~G~ 127 (369)
T PLN02682 81 DFTTIQAAIDSLPVI-NLVRVVIKVNAGTYR-EKVNIPPLKAYITLEGA 127 (369)
T ss_pred CccCHHHHHhhcccc-CCceEEEEEeCceee-EEEEEeccCceEEEEec
Confidence 344699999998410 112368999999997 55555 456777654
No 38
>smart00656 Amb_all Amb_all domain.
Probab=98.16 E-value=4.6e-05 Score=70.39 Aligned_cols=97 Identities=30% Similarity=0.338 Sum_probs=70.5
Q ss_pred EEEEeccccEEEEeEEEEcCCC--CCCCCCcCCCCCccEEEEeeEEEcC----------CceEeecCCCCccCcccCCCc
Q 012308 204 TIHPVYCSHVKVQNVTIRAPLD--SPNTDGIDPDSSDDVCIKDCYISTG----------DDLVSIKSGWDEYGISYGRPS 271 (466)
Q Consensus 204 ~i~~~~~~nv~i~~~~i~~~~~--~~n~DGi~~~~s~nV~I~n~~i~~g----------DD~iai~sg~~~~g~~~~~~s 271 (466)
++.+..++||.|+|++|+.... ..+.|+|.+..+++|.|++|.+..+ |..+.++.+ +
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~-----------s 101 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNG-----------S 101 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcc-----------c
Confidence 4445556677777777776542 2357899998899999999999886 333455543 8
Q ss_pred eeEEEEEEEEecCCCCeEEEceecC---CcEEEEEEEeEEEEcC
Q 012308 272 TKITIHGLIGETKLGAGIAIGSEMS---GGVSEVHAENLYFFNS 312 (466)
Q Consensus 272 ~nI~I~n~~~~~~~~~gi~Igs~~~---~~v~nI~i~n~~i~~~ 312 (466)
.+++|++|.|.+. ..+.-+|+... ....+|++.++.+.+.
T Consensus 102 ~~vTvs~~~f~~h-~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 102 TYVTISNNYFHNH-WKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ccEEEECceEecC-CEEEEEccCCCccccccceEEEECcEEcCc
Confidence 9999999999865 67778886422 2345899999998765
No 39
>PLN02176 putative pectinesterase
Probab=98.09 E-value=0.0015 Score=65.27 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhccccCCCcEEEecCCcceEeeEEe---ecCceEEec
Q 012308 59 TKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDL---ISHLTLWLD 103 (466)
Q Consensus 59 T~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~~l~l---~s~~tL~l~ 103 (466)
-.-||+||+++-.. ....-+|+|++|+|. ..+.+ +.+++|..+
T Consensus 51 f~TIq~AIdavP~~-~~~~~~I~Ik~GvY~-EkV~Ip~~k~~vtl~G~ 96 (340)
T PLN02176 51 FKTVQSAIDSIPLQ-NQNWIRILIQNGIYR-EKVTIPKEKGYIYMQGK 96 (340)
T ss_pred ccCHHHHHhhchhc-CCceEEEEECCcEEE-EEEEECCCCccEEEEEc
Confidence 55699999998310 112347999999998 55555 345666554
No 40
>smart00656 Amb_all Amb_all domain.
Probab=97.95 E-value=0.00054 Score=63.28 Aligned_cols=129 Identities=20% Similarity=0.144 Sum_probs=88.0
Q ss_pred eEEEEeecceEEeeEEEecCC------ceEEEEeccccEEEEeEEEEcCCC----CCCCCCc-CCC-CCccEEEEeeEEE
Q 012308 181 LVELMNSTGVIISNLTFLNPP------FWTIHPVYCSHVKVQNVTIRAPLD----SPNTDGI-DPD-SSDDVCIKDCYIS 248 (466)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns~------~~~i~~~~~~nv~i~~~~i~~~~~----~~n~DGi-~~~-~s~nV~I~n~~i~ 248 (466)
.+.+..++||.|++++|++.. ..+|.+..+++|.|++|++..... ....||. ++. .+.+|+|.+|.+.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 477777999999999999853 358899999999999999997510 1113554 333 5789999999998
Q ss_pred cCCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCc-eeEEEE
Q 012308 249 TGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSV-RGIRIK 319 (466)
Q Consensus 249 ~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~-~Gi~I~ 319 (466)
..+-+..+.++..... ....+|++.+|++.....+.-.+. .+ .+++-|+.+.+.. .++.++
T Consensus 113 ~h~~~~liG~~d~~~~----~~~~~vT~h~N~~~~~~~R~P~~r----~g--~~hv~NN~~~n~~~~~~~~~ 174 (190)
T smart00656 113 NHWKVMLLGHSDSDTD----DGKMRVTIAHNYFGNLRQRAPRVR----FG--YVHVYNNYYTGWTSYAIGGR 174 (190)
T ss_pred cCCEEEEEccCCCccc----cccceEEEECcEEcCcccCCCccc----CC--EEEEEeeEEeCcccEeEecC
Confidence 7666666665311000 003479999999976534444443 12 6888999888875 444443
No 41
>PLN02773 pectinesterase
Probab=97.95 E-value=0.0039 Score=61.85 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=72.0
Q ss_pred EEEeecceEEeeEEEecCCce----E-EEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeec
Q 012308 183 ELMNSTGVIISNLTFLNPPFW----T-IHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIK 257 (466)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 257 (466)
.+..++++..++|+|+|+..- . -.....+.+.+.+|+|....+. +... .....++||+|...=|-|- +
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDT-----L~~~-~gr~yf~~c~IeG~VDFIF-G 169 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDT-----LYLH-YGKQYLRDCYIEGSVDFIF-G 169 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccce-----eEeC-CCCEEEEeeEEeecccEEe-e
Confidence 444678999999999987321 1 1223467788888888765432 2221 2346777888876544432 1
Q ss_pred CCCCccCcccCCCceeEEEEEEEEecCCCCeE-EEceec-CCcEEEEEEEeEEEEcCce--eEEEE-ecCCCCeeEEEEE
Q 012308 258 SGWDEYGISYGRPSTKITIHGLIGETKLGAGI-AIGSEM-SGGVSEVHAENLYFFNSVR--GIRIK-TSPGRGGYVRNIS 332 (466)
Q Consensus 258 sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi-~Igs~~-~~~v~nI~i~n~~i~~~~~--Gi~I~-s~~g~~g~v~nI~ 332 (466)
.-...+++|++... ..|. ..-+.. ...-....|.||++.+... -+.++ .| +.-..+.
T Consensus 170 -------------~g~a~Fe~c~i~s~-~~g~ITA~~r~~~~~~~GfvF~~c~it~~~~~~~~yLGRpW----~~~a~vV 231 (317)
T PLN02773 170 -------------NSTALLEHCHIHCK-SAGFITAQSRKSSQESTGYVFLRCVITGNGGSGYMYLGRPW----GPFGRVV 231 (317)
T ss_pred -------------ccEEEEEeeEEEEc-cCcEEECCCCCCCCCCceEEEEccEEecCCCCcceeecCCC----CCCceEE
Confidence 34567777777653 2332 211111 1123356777777766431 12222 11 2234566
Q ss_pred EEceEEcC
Q 012308 333 ISNVTLNH 340 (466)
Q Consensus 333 ~~ni~i~~ 340 (466)
|.|..|.+
T Consensus 232 f~~t~l~~ 239 (317)
T PLN02773 232 FAYTYMDA 239 (317)
T ss_pred EEecccCC
Confidence 66666665
No 42
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.82 E-value=0.0009 Score=62.82 Aligned_cols=124 Identities=27% Similarity=0.282 Sum_probs=80.7
Q ss_pred eEEeeEEEecCC------ceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCcc
Q 012308 190 VIISNLTFLNPP------FWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEY 263 (466)
Q Consensus 190 v~I~~v~i~ns~------~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~ 263 (466)
+.|+++++.... ..++.+..++++.|++|++.+.. .+|+.+..+....+.+..... ++.+..+
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~----~~~i~~~~~~~~~~~~~~~~~---~~~~~~~---- 162 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSG----GDGIYFNTGTDYRIIGSTHVS---GIFIDNG---- 162 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-S----S-SEEEECCEECEEECCEEEE---EEEEESC----
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccC----ccEEEEEccccCcEeecccce---eeeeccc----
Confidence 347777775543 24577778888888888888642 566666544444444333221 2333322
Q ss_pred CcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEc-CceeEEEEecCCCCeeEEEEEEEceEEcCcc
Q 012308 264 GISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFN-SVRGIRIKTSPGRGGYVRNISISNVTLNHVD 342 (466)
Q Consensus 264 g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~-~~~Gi~I~s~~g~~g~v~nI~~~ni~i~~~~ 342 (466)
+.++.+.|+.+.+. ..|+..+ -++++++||++.+ ...||.+.... +++++|++++++.
T Consensus 163 -------~~~~~~~~~~~~~~-~~g~~~~------~~~~~i~n~~~~~~~~~gi~i~~~~-------~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 163 -------SNNVIVNNCIFNGG-DNGIILG------NNNITISNNTFEGNCGNGINIEGGS-------NIIISNNTIENCD 221 (225)
T ss_dssp -------EEEEEEECEEEESS-SCSEECE------EEEEEEECEEEESSSSESEEEEECS-------EEEEEEEEEESSS
T ss_pred -------eeEEEECCccccCC-CceeEee------cceEEEEeEEECCccceeEEEECCe-------EEEEEeEEEECCc
Confidence 46777788888876 6674433 2799999999998 67899998742 3788888888877
Q ss_pred eeE
Q 012308 343 VAI 345 (466)
Q Consensus 343 ~~i 345 (466)
.||
T Consensus 222 ~g~ 224 (225)
T PF12708_consen 222 DGI 224 (225)
T ss_dssp EEE
T ss_pred cCc
Confidence 765
No 43
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.80 E-value=0.0057 Score=62.58 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=33.2
Q ss_pred cCCCcchhHHHHHHHHHHhhccccCCCcEEEecCCcceEeeEEe---ecCceEEec
Q 012308 51 VGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDL---ISHLTLWLD 103 (466)
Q Consensus 51 ~gDg~tddT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~~l~l---~s~~tL~l~ 103 (466)
.+||.. |-.-||+|||++-......-.+|+|.+|+|. +.+.| +.+++|+.+
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~-EkV~Ip~~kp~ItL~G~ 140 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPGTYQ-GTVYVPAAAPPITLYGT 140 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCceeE-EEEEeCCCCceEEEEec
Confidence 445533 3456999999763100112358999999998 55666 468888874
No 44
>PLN02497 probable pectinesterase
Probab=97.79 E-value=0.0072 Score=60.22 Aligned_cols=43 Identities=21% Similarity=0.081 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhccccCCCcEEEecCCcceEeeEEe---ecCceEEec
Q 012308 59 TKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDL---ISHLTLWLD 103 (466)
Q Consensus 59 T~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~~l~l---~s~~tL~l~ 103 (466)
-.-||+||+++-.. ....-+|+|-+|+|. ..+.+ +.+++|..+
T Consensus 44 f~TIq~AIdavP~~-~~~~~~I~Ik~G~Y~-EkV~Ip~~k~~itl~G~ 89 (331)
T PLN02497 44 FTTIQSAIDSVPSN-NKHWFCINVKAGLYR-EKVKIPYDKPFIVLVGA 89 (331)
T ss_pred ccCHHHHHhhcccc-CCceEEEEEeCcEEE-EEEEecCCCCcEEEEec
Confidence 44699999988410 112247999999997 44444 345666543
No 45
>PLN02634 probable pectinesterase
Probab=97.71 E-value=0.014 Score=58.71 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhhccccCCCcEEEecCCcceEeeEEe---ecCceEEec
Q 012308 58 NTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDL---ISHLTLWLD 103 (466)
Q Consensus 58 dT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~~l~l---~s~~tL~l~ 103 (466)
|=.-||+|||++-.. ....-+|+|-+|+|. ..+.| +.+++|..+
T Consensus 67 df~TIQaAIda~P~~-~~~r~vI~Ik~GvY~-EkV~Ip~~k~~ItL~G~ 113 (359)
T PLN02634 67 DFRSVQDAVDSVPKN-NTMSVTIKINAGFYR-EKVVVPATKPYITFQGA 113 (359)
T ss_pred CccCHHHHHhhCccc-CCccEEEEEeCceEE-EEEEEcCCCCeEEEEec
Confidence 355699999998410 122358999999997 55555 345666554
No 46
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.69 E-value=0.00024 Score=66.16 Aligned_cols=96 Identities=33% Similarity=0.472 Sum_probs=63.3
Q ss_pred EEEEe-ccccEEEEeEEEEcC-----------CCCCCCCCcCCCCCccEEEEeeEEEcC--------Cc-eEeecCCCCc
Q 012308 204 TIHPV-YCSHVKVQNVTIRAP-----------LDSPNTDGIDPDSSDDVCIKDCYISTG--------DD-LVSIKSGWDE 262 (466)
Q Consensus 204 ~i~~~-~~~nv~i~~~~i~~~-----------~~~~n~DGi~~~~s~nV~I~n~~i~~g--------DD-~iai~sg~~~ 262 (466)
++.+. +++||.|+|++|... ......|+|.+..++||.|++|.+..+ .| .+.++.+
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~--- 114 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKG--- 114 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESS---
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeC---
Confidence 44444 677777777777761 123457889998999999999999876 33 3566554
Q ss_pred cCcccCCCceeEEEEEEEEecCCCCeEEEcee----cCCcEEEEEEEeEEEEcC
Q 012308 263 YGISYGRPSTKITIHGLIGETKLGAGIAIGSE----MSGGVSEVHAENLYFFNS 312 (466)
Q Consensus 263 ~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~----~~~~v~nI~i~n~~i~~~ 312 (466)
+.+|+|++|.|.+. ..+..+|+. ...+ .++++.++.+.++
T Consensus 115 --------s~~vTiS~n~f~~~-~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 115 --------SDNVTISNNIFDNH-NKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp --------TEEEEEES-EEEEE-EETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred --------CceEEEEchhcccc-ccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 89999999999865 455567764 1234 8899999988765
No 47
>PLN02665 pectinesterase family protein
Probab=97.69 E-value=0.024 Score=57.37 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=75.2
Q ss_pred EEEEeecceEEeeEEEecCCc---------eEE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCC
Q 012308 182 VELMNSTGVIISNLTFLNPPF---------WTI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGD 251 (466)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns~~---------~~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gD 251 (466)
-....++++..+|++|+|+.. -.+ .....+.+.+.+|+|....+. +.. ....-..+||+|...=
T Consensus 148 Tv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDT-----L~~-~~gr~yf~~CyIeG~V 221 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDT-----LCD-DKGRHFFKDCYIEGTV 221 (366)
T ss_pred EEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccce-----eEe-CCCCEEEEeeEEeecc
Confidence 334567888888888888631 111 123467788888888875432 221 1235678888888755
Q ss_pred ceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCe----EEEcee-cCCcEEEEEEEeEEEEcCceeEEEE-ecCCCC
Q 012308 252 DLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAG----IAIGSE-MSGGVSEVHAENLYFFNSVRGIRIK-TSPGRG 325 (466)
Q Consensus 252 D~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~g----i~Igs~-~~~~v~nI~i~n~~i~~~~~Gi~I~-s~~g~~ 325 (466)
|-|- + .-...+++|++... ..+ |.--+. ....-....|.||++.+....+.++ .|
T Consensus 222 DFIF-G-------------~g~a~fe~C~i~s~-~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yLGRpW---- 282 (366)
T PLN02665 222 DFIF-G-------------SGKSLYLNTELHVV-GDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGRAW---- 282 (366)
T ss_pred ceec-c-------------ccceeeEccEEEEe-cCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceeecCCC----
Confidence 5441 1 34567778877653 222 222111 1112345678888887754233333 22
Q ss_pred eeEEEEEEEceEEcC
Q 012308 326 GYVRNISISNVTLNH 340 (466)
Q Consensus 326 g~v~nI~~~ni~i~~ 340 (466)
+.-..+.|.+..|.+
T Consensus 283 ~~ysrvVf~~t~m~~ 297 (366)
T PLN02665 283 MSRPRVVFAYTEMSS 297 (366)
T ss_pred CCcceEEEEccccCC
Confidence 234567777777765
No 48
>PLN02432 putative pectinesterase
Probab=97.55 E-value=0.017 Score=56.68 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhccccCCCcEEEecCCcceEeeEEe---ecCceEEe
Q 012308 59 TKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDL---ISHLTLWL 102 (466)
Q Consensus 59 T~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~~l~l---~s~~tL~l 102 (466)
=.-||+||+++-.. ....-+|+|.+|+|. ..+.+ +.+++|..
T Consensus 23 f~TIq~Aida~p~~-~~~~~~I~I~~G~Y~-E~V~ip~~k~~itl~G 67 (293)
T PLN02432 23 FRKIQDAIDAVPSN-NSQLVFIWVKPGIYR-EKVVVPADKPFITLSG 67 (293)
T ss_pred ccCHHHHHhhcccc-CCceEEEEEeCceeE-EEEEEeccCceEEEEE
Confidence 55699999998410 112358999999996 45555 33555544
No 49
>PLN02671 pectinesterase
Probab=97.52 E-value=0.016 Score=58.36 Aligned_cols=44 Identities=9% Similarity=0.210 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhhccccCCCcEEEecCCcceEeeEEe---ecCceEEec
Q 012308 58 NTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDL---ISHLTLWLD 103 (466)
Q Consensus 58 dT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~~l~l---~s~~tL~l~ 103 (466)
|-.-||+||+++-.. ....-+|+|.||+|. ..+.| +.+++|..+
T Consensus 70 df~TIQ~AIdavP~~-~~~~~~I~Ik~GvY~-EkV~I~~~k~~Itl~G~ 116 (359)
T PLN02671 70 DSLTVQGAVDMVPDY-NSQRVKIYILPGIYR-EKVLVPKSKPYISFIGN 116 (359)
T ss_pred CccCHHHHHHhchhc-CCccEEEEEeCceEE-EEEEECCCCCeEEEEec
Confidence 355699999998421 122358999999998 55555 346666654
No 50
>PLN02304 probable pectinesterase
Probab=97.52 E-value=0.019 Score=58.03 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhccccCCCcEEEecCCcceEeeEEe---ecCceEEec
Q 012308 59 TKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDL---ISHLTLWLD 103 (466)
Q Consensus 59 T~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~~l~l---~s~~tL~l~ 103 (466)
=.-||+||+++-.. ....-+|+|.+|+|. ..+.+ +.+++|..+
T Consensus 87 f~TIQ~AIdavP~~-~~~r~vI~Ik~GvY~-EkV~Ip~~K~~Itl~G~ 132 (379)
T PLN02304 87 FTTVQSAVDAVGNF-SQKRNVIWINSGIYY-EKVTVPKTKPNITFQGQ 132 (379)
T ss_pred ccCHHHHHhhCccc-CCCcEEEEEeCeEeE-EEEEECCCCCcEEEEec
Confidence 45699999998410 122457999999997 55555 456676554
No 51
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.47 E-value=0.019 Score=60.60 Aligned_cols=134 Identities=10% Similarity=0.064 Sum_probs=72.8
Q ss_pred EEEEeecceEEeeEEEecCCce----EE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEee
Q 012308 182 VELMNSTGVIISNLTFLNPPFW----TI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSI 256 (466)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai 256 (466)
-.....+++..+|++|+|.... .+ .....+...+.+|+|.+..+. +... ...-..++|+|...=|-| +
T Consensus 307 Tv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDT-----Ly~~-~~Rqyy~~C~I~GtVDFI-F 379 (529)
T PLN02170 307 TVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDS-----LYTH-SKRQFYRETDITGTVDFI-F 379 (529)
T ss_pred EEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCc-----ceeC-CCCEEEEeeEEcccccee-c
Confidence 3445577888889999887321 11 234567788888888875432 2222 345567888887654433 1
Q ss_pred cCCCCccCcccCCCceeEEEEEEEEecCCC----CeEEEce-ecCCcEEEEEEEeEEEEcCceeEEEE-ecCCCCeeEEE
Q 012308 257 KSGWDEYGISYGRPSTKITIHGLIGETKLG----AGIAIGS-EMSGGVSEVHAENLYFFNSVRGIRIK-TSPGRGGYVRN 330 (466)
Q Consensus 257 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~----~gi~Igs-~~~~~v~nI~i~n~~i~~~~~Gi~I~-s~~g~~g~v~n 330 (466)
| .-...++||.+..-.. .-|..-+ .....-..+.|.||++.... -..++ .| ..-..
T Consensus 380 --G-----------~a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~-~~yLGRPW----~~ysr 441 (529)
T PLN02170 380 --G-----------NSAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES-MTYLGRPW----KEYSR 441 (529)
T ss_pred --c-----------cceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC-ceeeeCCC----CCCce
Confidence 1 3456777777754211 1122211 11122346778888887653 22222 12 22345
Q ss_pred EEEEceEEcC
Q 012308 331 ISISNVTLNH 340 (466)
Q Consensus 331 I~~~ni~i~~ 340 (466)
+.|-+..|.+
T Consensus 442 vVf~~t~l~~ 451 (529)
T PLN02170 442 TVVMQSFIDG 451 (529)
T ss_pred EEEEecccCC
Confidence 6666666655
No 52
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.016 Score=56.74 Aligned_cols=144 Identities=13% Similarity=0.046 Sum_probs=88.6
Q ss_pred CCCeeEEEEeecceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEee
Q 012308 177 TRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSI 256 (466)
Q Consensus 177 ~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai 256 (466)
.|...|++.++++.+|.+-.|.-- ..+|....++...|++.+++.. .-|.|...+++..++++..+.+.-+.++
T Consensus 148 ~rGnGI~vyNa~~a~V~~ndisy~-rDgIy~~~S~~~~~~gnr~~~~-----RygvHyM~t~~s~i~dn~s~~N~vG~AL 221 (408)
T COG3420 148 ERGNGIYVYNAPGALVVGNDISYG-RDGIYSDTSQHNVFKGNRFRDL-----RYGVHYMYTNDSRISDNSSRDNRVGYAL 221 (408)
T ss_pred hccCceEEEcCCCcEEEcCccccc-cceEEEcccccceecccchhhe-----eeeEEEEeccCcEeecccccCCcceEEE
Confidence 455667788888877777665432 3567777777777777777643 3467777778888888777777777777
Q ss_pred cCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEEEEEce
Q 012308 257 KSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNV 336 (466)
Q Consensus 257 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI~~~ni 336 (466)
.- +++++|+|+.-.+..++||-+- ..+.-.|.++.+.+..+|..+--+.. .--.|+++
T Consensus 222 My------------s~~l~V~~nrS~Gnrd~Gilln-----ya~~s~i~~N~v~g~~~Gk~vfiyn~-----~~~ki~~n 279 (408)
T COG3420 222 MY------------SDRLKVSDNRSSGNRDHGILLN-----YANYSRIVGNRVAGNVSGKCVFIYNA-----NYNKIRGN 279 (408)
T ss_pred EE------------eccEEEEcCcccCccccceeee-----eeeccceeccEEEecccceEEEEecc-----chhhhccc
Confidence 65 7888888888877777777664 23333344443434444533322221 12234455
Q ss_pred EEcCcceeEEEe
Q 012308 337 TLNHVDVAIIFT 348 (466)
Q Consensus 337 ~i~~~~~~i~i~ 348 (466)
+++++.-||.+.
T Consensus 280 ~feg~~iGIhlt 291 (408)
T COG3420 280 SFEGCAIGIHLT 291 (408)
T ss_pred eeecceEEEEEe
Confidence 555555555554
No 53
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.21 E-value=0.061 Score=57.56 Aligned_cols=80 Identities=15% Similarity=0.099 Sum_probs=46.3
Q ss_pred EEEeecceEEeeEEEecCCce----EEE-EeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeec
Q 012308 183 ELMNSTGVIISNLTFLNPPFW----TIH-PVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIK 257 (466)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 257 (466)
.....+++..+|++|+|...- .+- -...+.+.+.+|+|.+..+ -+... +.....++|+|...=|-|-
T Consensus 325 ~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD-----TLy~~-~~rq~y~~C~I~GtVDFIF-- 396 (553)
T PLN02708 325 VGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQD-----TLYAH-SLRQFYKSCRIQGNVDFIF-- 396 (553)
T ss_pred EEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccc-----cceeC-CCceEEEeeEEeecCCEEe--
Confidence 334567888888998887421 122 2346677777777776543 22222 2345667777776444331
Q ss_pred CCCCccCcccCCCceeEEEEEEEEe
Q 012308 258 SGWDEYGISYGRPSTKITIHGLIGE 282 (466)
Q Consensus 258 sg~~~~g~~~~~~s~nI~I~n~~~~ 282 (466)
| .-...++||.+.
T Consensus 397 -G-----------~a~avfq~c~i~ 409 (553)
T PLN02708 397 -G-----------NSAAVFQDCAIL 409 (553)
T ss_pred -c-----------CceEEEEccEEE
Confidence 1 345666777665
No 54
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.21 E-value=0.064 Score=54.17 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=37.0
Q ss_pred EEeecCccCCCcchhHHHHHHHHHHhhccccCCCcEEEecCC-cceEe-eEEeecCceEEecCCcEEecC
Q 012308 44 SITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAG-QWLTG-SFDLISHLTLWLDKDAVILGS 111 (466)
Q Consensus 44 nV~dfGA~gDg~tddT~Aiq~Ai~~a~~~~~~gg~tV~iP~G-~Y~~~-~l~l~s~~tL~l~~ga~i~~~ 111 (466)
.|+.|=..+|. | +++||+.= ++|.+-|| +|.+. ++.|++...|.+ .||+++..
T Consensus 45 qvkt~~~~P~e--D----le~~I~~h--------aKVaL~Pg~~Y~i~~~V~I~~~cYIiG-nGA~V~v~ 99 (386)
T PF01696_consen 45 QVKTYWMEPGE--D----LEEAIRQH--------AKVALRPGAVYVIRKPVNIRSCCYIIG-NGATVRVN 99 (386)
T ss_pred eEEEEEcCCCc--C----HHHHHHhc--------CEEEeCCCCEEEEeeeEEecceEEEEC-CCEEEEEe
Confidence 46667666665 2 56666532 36777666 69975 999999999866 48888754
No 55
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.20 E-value=0.0083 Score=59.34 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=64.0
Q ss_pred EeecceEEeeEEEecCCce------EEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecC
Q 012308 185 MNSTGVIISNLTFLNPPFW------TIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKS 258 (466)
Q Consensus 185 ~~~~nv~I~~v~i~ns~~~------~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 258 (466)
...+++.+++|+|.|+... .+. ...+.+.+.+|+|.... |-+... .....++||+|...-|-|- +
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g~Q-----DTL~~~-~~r~y~~~c~IeG~vDFIf-G- 154 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLGYQ-----DTLYAN-GGRQYFKNCYIEGNVDFIF-G- 154 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE-ST-----T-EEE--SSEEEEES-EEEESEEEEE-E-
T ss_pred ccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEcccc-----ceeeec-cceeEEEeeEEEecCcEEE-C-
Confidence 3578899999999886321 122 34567788888887654 323322 3456777888877655542 1
Q ss_pred CCCccCcccCCCceeEEEEEEEEecCCC----Ce-EEEce-ecCCcEEEEEEEeEEEEcCc--------eeEEEEecCCC
Q 012308 259 GWDEYGISYGRPSTKITIHGLIGETKLG----AG-IAIGS-EMSGGVSEVHAENLYFFNSV--------RGIRIKTSPGR 324 (466)
Q Consensus 259 g~~~~g~~~~~~s~nI~I~n~~~~~~~~----~g-i~Igs-~~~~~v~nI~i~n~~i~~~~--------~Gi~I~s~~g~ 324 (466)
.-...++||++..... .+ |.-.+ .....-...+|.||++.... ....++-.
T Consensus 155 ------------~~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLGRp--- 219 (298)
T PF01095_consen 155 ------------NGTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGDSGVSPSYSDGSVYLGRP--- 219 (298)
T ss_dssp ------------SSEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEESTTTCGGCCCSTEEEE-----
T ss_pred ------------CeeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecCccccccccceeEEecCc---
Confidence 2355677777764210 11 22221 11223456777888777542 12223221
Q ss_pred CeeEEEEEEEceEEcCc
Q 012308 325 GGYVRNISISNVTLNHV 341 (466)
Q Consensus 325 ~g~v~nI~~~ni~i~~~ 341 (466)
.+.-..+.|.|..|.+.
T Consensus 220 W~~~s~vvf~~t~m~~~ 236 (298)
T PF01095_consen 220 WGPYSRVVFINTYMDDH 236 (298)
T ss_dssp SSEETEEEEES-EE-TT
T ss_pred ccceeeEEEEccccCCe
Confidence 12334567777777653
No 56
>PLN02916 pectinesterase family protein
Probab=97.19 E-value=0.062 Score=56.51 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=61.4
Q ss_pred EEEEeecceEEeeEEEecCCce----EE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEee
Q 012308 182 VELMNSTGVIISNLTFLNPPFW----TI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSI 256 (466)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai 256 (466)
-.....+++..+|++|.|.... .+ .....+...+.+|+|....+ -+... +..-..++|+|...=|-|-
T Consensus 271 T~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFIF- 343 (502)
T PLN02916 271 TFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQD-----TLFVH-SLRQFYRDCHIYGTIDFIF- 343 (502)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCc-----eeEeC-CCCEEEEecEEecccceec-
Confidence 3344567888888888886321 12 12346777888888877543 22222 2346678888876544331
Q ss_pred cCCCCccCcccCCCceeEEEEEEEEecCC-----CCeEEEcee-cCCcEEEEEEEeEEEEcC
Q 012308 257 KSGWDEYGISYGRPSTKITIHGLIGETKL-----GAGIAIGSE-MSGGVSEVHAENLYFFNS 312 (466)
Q Consensus 257 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gi~Igs~-~~~~v~nI~i~n~~i~~~ 312 (466)
| .-...++||++.... ..-|.-.+. ....-..+.|.||++...
T Consensus 344 --G-----------~a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 344 --G-----------DAAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred --c-----------CceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 1 356677777775421 112222211 112335677788877764
No 57
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.15 E-value=0.082 Score=55.99 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=72.5
Q ss_pred EEEeecceEEeeEEEecCCc----eEEE-EeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeec
Q 012308 183 ELMNSTGVIISNLTFLNPPF----WTIH-PVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIK 257 (466)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns~~----~~i~-~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 257 (466)
.....+++..+|++|.|+.. -.+- ....+...+.+|+|.+..+ -+... ...-..++|+|...=|-| +
T Consensus 288 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-F- 359 (520)
T PLN02201 288 FAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQD-----TLYTH-TMRQFYRECRITGTVDFI-F- 359 (520)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCC-----eeEeC-CCCEEEEeeEEeecccEE-e-
Confidence 34457788888888888742 1122 2446778888888887543 22222 234567788887654433 1
Q ss_pred CCCCccCcccCCCceeEEEEEEEEecCC-----CCeEEEcee-cCCcEEEEEEEeEEEEcCceeEE----EEecCCCC-e
Q 012308 258 SGWDEYGISYGRPSTKITIHGLIGETKL-----GAGIAIGSE-MSGGVSEVHAENLYFFNSVRGIR----IKTSPGRG-G 326 (466)
Q Consensus 258 sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gi~Igs~-~~~~v~nI~i~n~~i~~~~~Gi~----I~s~~g~~-g 326 (466)
| .-...++||++..-. ...|..-+. ....-..+.|.||++........ .+..-|+. +
T Consensus 360 -G-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~~~~~~~~~~~~~yLGRPW~ 427 (520)
T PLN02201 360 -G-----------DATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISADTDLLPYLNTTATYLGRPWK 427 (520)
T ss_pred -c-----------CceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeecCCC
Confidence 1 345777777776420 122322221 11233467778888766431100 01111221 2
Q ss_pred eEEEEEEEceEEcC
Q 012308 327 YVRNISISNVTLNH 340 (466)
Q Consensus 327 ~v~nI~~~ni~i~~ 340 (466)
.-..+.|-+..|.+
T Consensus 428 ~ysrvv~~~t~l~~ 441 (520)
T PLN02201 428 LYSRTVFMQNYMSD 441 (520)
T ss_pred CCceEEEEecCcCC
Confidence 34566666666665
No 58
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.12 E-value=0.0051 Score=57.29 Aligned_cols=126 Identities=25% Similarity=0.212 Sum_probs=76.2
Q ss_pred EeecceEEeeEEEecC---------------CceEEEEeccccEEEEeEEEEcCCC---CCCCCC-cCCC-CCccEEEEe
Q 012308 185 MNSTGVIISNLTFLNP---------------PFWTIHPVYCSHVKVQNVTIRAPLD---SPNTDG-IDPD-SSDDVCIKD 244 (466)
Q Consensus 185 ~~~~nv~I~~v~i~ns---------------~~~~i~~~~~~nv~i~~~~i~~~~~---~~n~DG-i~~~-~s~nV~I~n 244 (466)
..++||.|++++|++. ....+.+..+++|.|++|++..... ....|| +++. .+.+|+|.+
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 4899999999999982 3345888899999999999998621 111455 4553 578999999
Q ss_pred eEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcC-ceeEEEEe
Q 012308 245 CYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNS-VRGIRIKT 320 (466)
Q Consensus 245 ~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~-~~Gi~I~s 320 (466)
|.|...+.+..++. .+.. . ... ..++++.+|.|.+...+.-.+. . -.+++-|+.+.+. ..++....
T Consensus 123 n~f~~~~k~~l~G~-~d~~-~-~~~-~~~vT~hhN~f~~~~~R~P~~r----~--G~~Hv~NN~~~~~~~y~i~~~~ 189 (200)
T PF00544_consen 123 NIFDNHNKTMLIGS-SDSN-S-TDR-GLRVTFHHNYFANTNSRNPRVR----F--GYVHVYNNYYYNWSGYAIGARS 189 (200)
T ss_dssp -EEEEEEETCEESS-CTTC-G-GGT-TEEEEEES-EEEEEEE-TTEEC----S--CEEEEES-EEEEECSESEEEET
T ss_pred hhccccccccccCC-CCCc-c-ccC-CceEEEEeEEECchhhCCCccc----c--cEEEEEEeeeECCCCEEEEccC
Confidence 99988655544444 2221 1 112 3899999998865311111222 1 2578888877653 35666554
No 59
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.10 E-value=0.055 Score=58.05 Aligned_cols=137 Identities=13% Similarity=0.071 Sum_probs=76.3
Q ss_pred EEeecceEEeeEEEecCCc----eEE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecC
Q 012308 184 LMNSTGVIISNLTFLNPPF----WTI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKS 258 (466)
Q Consensus 184 ~~~~~nv~I~~v~i~ns~~----~~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 258 (466)
....+++..+|++|.|... -.+ .....+...+.+|+|.+..+ -+... ...-..++|+|...=|-| +
T Consensus 336 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-F-- 406 (566)
T PLN02713 336 AVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQD-----TLYTH-SLRQFYRECDIYGTVDFI-F-- 406 (566)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCc-----ceEEC-CCCEEEEeeEEeccccee-c--
Confidence 3456889999999998632 112 23457788888999887553 23222 345678888888654443 1
Q ss_pred CCCccCcccCCCceeEEEEEEEEecCC-----CCeEEEce-ecCCcEEEEEEEeEEEEcCceeE----EEEecCCCC-ee
Q 012308 259 GWDEYGISYGRPSTKITIHGLIGETKL-----GAGIAIGS-EMSGGVSEVHAENLYFFNSVRGI----RIKTSPGRG-GY 327 (466)
Q Consensus 259 g~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gi~Igs-~~~~~v~nI~i~n~~i~~~~~Gi----~I~s~~g~~-g~ 327 (466)
| .-...++||.+..-. ...|..-+ .....-..+.|.||++....... ..++.-|+. ..
T Consensus 407 G-----------~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ 475 (566)
T PLN02713 407 G-----------NAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKE 475 (566)
T ss_pred c-----------cceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCcccccccccceeeecCCCC
Confidence 1 456778888885420 11232221 11223456788888887653100 011111222 23
Q ss_pred EEEEEEEceEEcC
Q 012308 328 VRNISISNVTLNH 340 (466)
Q Consensus 328 v~nI~~~ni~i~~ 340 (466)
-..+.|.+..|.+
T Consensus 476 ysr~V~~~s~~~~ 488 (566)
T PLN02713 476 YSRTVVMQSYIDG 488 (566)
T ss_pred cceEEEEecccCC
Confidence 4566666666665
No 60
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.10 E-value=0.052 Score=57.88 Aligned_cols=111 Identities=9% Similarity=0.023 Sum_probs=64.4
Q ss_pred EEEEeecceEEeeEEEecCCce----EE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEee
Q 012308 182 VELMNSTGVIISNLTFLNPPFW----TI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSI 256 (466)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai 256 (466)
-.....+++..+|++|+|.... .+ .....+...+.+|+|....+ -+... +..-..+||+|...=|-| +
T Consensus 307 T~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQD-----TLy~~-~~rq~y~~c~I~GtVDFI-F 379 (538)
T PLN03043 307 TFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQD-----TLYVH-SLRQFYRECDIYGTVDFI-F 379 (538)
T ss_pred EEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCc-----ccccC-CCcEEEEeeEEeeccceE-e
Confidence 3444568899999999986421 22 23456778888888887653 23222 344678888887654443 1
Q ss_pred cCCCCccCcccCCCceeEEEEEEEEecCC-----CCeEEEcee-cCCcEEEEEEEeEEEEcC
Q 012308 257 KSGWDEYGISYGRPSTKITIHGLIGETKL-----GAGIAIGSE-MSGGVSEVHAENLYFFNS 312 (466)
Q Consensus 257 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gi~Igs~-~~~~v~nI~i~n~~i~~~ 312 (466)
| .-...++||++..-. ...|...+. ....-..+.|.||++...
T Consensus 380 --G-----------~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 380 --G-----------NAAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred --e-----------cceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecC
Confidence 1 356777777775420 122333211 112234677778877764
No 61
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.09 E-value=0.07 Score=56.86 Aligned_cols=134 Identities=11% Similarity=0.103 Sum_probs=68.3
Q ss_pred EEEEeecceEEeeEEEecCCce----EE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEee
Q 012308 182 VELMNSTGVIISNLTFLNPPFW----TI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSI 256 (466)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai 256 (466)
-.....+++..+|++|+|.... .+ .....+.+.+.+|+|.+..+. +... ...-..++|+|...=|-| +
T Consensus 313 T~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDT-----Ly~~-~~rqyy~~C~I~GtVDFI-F 385 (537)
T PLN02506 313 TVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDT-----LYAH-SLRQFYRECEIYGTIDFI-F 385 (537)
T ss_pred EEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccccc-----ceec-CCceEEEeeEEecccceE-c
Confidence 3345677888888898887321 11 223467777777777765432 2222 234567777777644433 1
Q ss_pred cCCCCccCcccCCCceeEEEEEEEEecCCC-----CeEEEcee-cCCcEEEEEEEeEEEEcCceeEEEE-ecCCCCeeEE
Q 012308 257 KSGWDEYGISYGRPSTKITIHGLIGETKLG-----AGIAIGSE-MSGGVSEVHAENLYFFNSVRGIRIK-TSPGRGGYVR 329 (466)
Q Consensus 257 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~-----~gi~Igs~-~~~~v~nI~i~n~~i~~~~~Gi~I~-s~~g~~g~v~ 329 (466)
+ .-...++||++..-.. ..|..-+. ....-..+.|.||++.... ..+++ .| +.-.
T Consensus 386 G-------------~a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~-~~yLGRPW----~~~s 447 (537)
T PLN02506 386 G-------------NGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLATQ-PTYLGRPW----KQYS 447 (537)
T ss_pred c-------------CceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccCC-ceEEecCC----CCCc
Confidence 1 3456677777753210 12222111 1112345667777765532 22222 11 2234
Q ss_pred EEEEEceEEcC
Q 012308 330 NISISNVTLNH 340 (466)
Q Consensus 330 nI~~~ni~i~~ 340 (466)
.+.|-+..|.+
T Consensus 448 r~v~~~t~l~~ 458 (537)
T PLN02506 448 RTVFMNTYMSQ 458 (537)
T ss_pred eEEEEecCCCC
Confidence 55555555554
No 62
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.06 E-value=0.00057 Score=49.47 Aligned_cols=38 Identities=32% Similarity=0.249 Sum_probs=22.1
Q ss_pred ccCCCcchhHHHHHHHHHHhhccccCCCcEEEecCCcceEeeE
Q 012308 50 AVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSF 92 (466)
Q Consensus 50 A~gDg~tddT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~~l 92 (466)
|+|||+||||+||.+|+++. ..|-.|---.=||.+.+|
T Consensus 1 A~GDGvtdDt~A~~a~l~a~-----~~g~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS-----PVGRKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS------TTS-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHhcc-----CCCeEEecCCceEEEeeC
Confidence 78999999999999999864 444444443337876654
No 63
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.05 E-value=0.075 Score=56.68 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=72.6
Q ss_pred EeecceEEeeEEEecCCce----EE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCC
Q 012308 185 MNSTGVIISNLTFLNPPFW----TI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSG 259 (466)
Q Consensus 185 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 259 (466)
...+++..+|++|.|.... .+ .....+...+.+|+|.+..+. +... ...-..++|+|...=|-| ++
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDT-----Ly~~-~~Rqyy~~C~I~GtVDFI-FG-- 379 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDT-----LMVH-SQRQFYRECYIYGTVDFI-FG-- 379 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccch-----hccC-CCceEEEeeEEeeccceE-ec--
Confidence 4567888888888886421 12 234567788888888875532 2222 234578888888654443 11
Q ss_pred CCccCcccCCCceeEEEEEEEEecCCC-----CeEEEcee-cCCcEEEEEEEeEEEEcCceeE----EEEecCCCC-eeE
Q 012308 260 WDEYGISYGRPSTKITIHGLIGETKLG-----AGIAIGSE-MSGGVSEVHAENLYFFNSVRGI----RIKTSPGRG-GYV 328 (466)
Q Consensus 260 ~~~~g~~~~~~s~nI~I~n~~~~~~~~-----~gi~Igs~-~~~~v~nI~i~n~~i~~~~~Gi----~I~s~~g~~-g~v 328 (466)
.-...++||++..-.. .-|.-.+. ....-..+.|.||++....... ..+..-|+. ...
T Consensus 380 -----------~a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 448 (539)
T PLN02995 380 -----------NAAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAPDLKPVVRTVKTYMGRPWMKF 448 (539)
T ss_pred -----------ccceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCC
Confidence 3566777777754210 11222111 1123456778888887643210 011222222 234
Q ss_pred EEEEEEceEEcC
Q 012308 329 RNISISNVTLNH 340 (466)
Q Consensus 329 ~nI~~~ni~i~~ 340 (466)
..+.|-+..|.+
T Consensus 449 srvv~~~t~~~~ 460 (539)
T PLN02995 449 SRTVVLQTYLDN 460 (539)
T ss_pred cceEEEeccccC
Confidence 456666666655
No 64
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.04 E-value=0.089 Score=55.19 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=60.7
Q ss_pred EeecceEEeeEEEecCCc----eEE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCC
Q 012308 185 MNSTGVIISNLTFLNPPF----WTI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSG 259 (466)
Q Consensus 185 ~~~~nv~I~~v~i~ns~~----~~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 259 (466)
...+++..+|++|+|... -.+ .....+...+.+|+|....+ -+.. .+..-..++|+|...=|-|- |
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQD-----TLy~-~~~RqyyrdC~I~GtVDFIF---G 351 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQD-----ALYP-HRDRQFYRECFITGTVDFIC---G 351 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCc-----ceee-CCCCEEEEeeEEeeccceEe---c
Confidence 346678888888887632 112 22456778888888887543 2222 23456778888876544431 1
Q ss_pred CCccCcccCCCceeEEEEEEEEecCCC-----CeEEEceec-CCcEEEEEEEeEEEEcCc
Q 012308 260 WDEYGISYGRPSTKITIHGLIGETKLG-----AGIAIGSEM-SGGVSEVHAENLYFFNSV 313 (466)
Q Consensus 260 ~~~~g~~~~~~s~nI~I~n~~~~~~~~-----~gi~Igs~~-~~~v~nI~i~n~~i~~~~ 313 (466)
.-...++||++..-.. .-|.-.+.. ...-..+.|.||++....
T Consensus 352 -----------~a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 352 -----------NAAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred -----------ceEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence 4567777777754210 112222111 122346778888777653
No 65
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.03 E-value=0.066 Score=57.12 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=73.4
Q ss_pred EEeecceEEeeEEEecCCce----EE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecC
Q 012308 184 LMNSTGVIISNLTFLNPPFW----TI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKS 258 (466)
Q Consensus 184 ~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 258 (466)
....+++..+|++|+|.... .+ .....+.+.+.+|+|.+..+. +... +..-..++|+|...=|-| +
T Consensus 313 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDT-----Ly~~-~~Rqyy~~C~I~GtVDFI-F-- 383 (541)
T PLN02416 313 AVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDT-----LYVH-SFRQFYRECDIYGTIDYI-F-- 383 (541)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccch-----hccC-CCceEEEeeEEeecccee-e--
Confidence 34578889999999887432 11 123467788888888876532 2222 345678888888754443 1
Q ss_pred CCCccCcccCCCceeEEEEEEEEecCCC----Ce-EEEcee-cCCcEEEEEEEeEEEEcCceeE----EEEecCCCC-ee
Q 012308 259 GWDEYGISYGRPSTKITIHGLIGETKLG----AG-IAIGSE-MSGGVSEVHAENLYFFNSVRGI----RIKTSPGRG-GY 327 (466)
Q Consensus 259 g~~~~g~~~~~~s~nI~I~n~~~~~~~~----~g-i~Igs~-~~~~v~nI~i~n~~i~~~~~Gi----~I~s~~g~~-g~ 327 (466)
| .-...++||++..-.. .+ |.-.+. ....-..+.|.||++.....-. ..++.-|+. ..
T Consensus 384 G-----------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ 452 (541)
T PLN02416 384 G-----------NAAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILATEDLYSNSNSVKSYLGRPWRV 452 (541)
T ss_pred c-----------cceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecCCccccccccccccccCCCCC
Confidence 1 3567777787754210 01 111111 1122456778888887543100 112222222 23
Q ss_pred EEEEEEEceEEcC
Q 012308 328 VRNISISNVTLNH 340 (466)
Q Consensus 328 v~nI~~~ni~i~~ 340 (466)
-..+.|-+..|.+
T Consensus 453 ~sr~v~~~s~i~~ 465 (541)
T PLN02416 453 YSRTVVLESYIDD 465 (541)
T ss_pred CccEEEEecccCC
Confidence 4456666666655
No 66
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.99 E-value=0.16 Score=53.78 Aligned_cols=140 Identities=13% Similarity=0.110 Sum_probs=76.6
Q ss_pred EEEEeecceEEeeEEEecCCce----EEE-EeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEee
Q 012308 182 VELMNSTGVIISNLTFLNPPFW----TIH-PVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSI 256 (466)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai 256 (466)
-.....+++..+|++|.|.... .+- ....+.+.+.+|+|.+..+ -+... ...-..++|+|...=|-| +
T Consensus 299 T~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD-----TLy~~-~~Rqyy~~C~IeGtVDFI-F 371 (530)
T PLN02933 299 TVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQD-----TLYVH-SAKQFYRECDIYGTIDFI-F 371 (530)
T ss_pred EEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEeccc-----ccccC-CCceEEEeeEEeccccee-c
Confidence 3345577888889999886421 222 2457788888888887553 23222 234678888888754433 1
Q ss_pred cCCCCccCcccCCCceeEEEEEEEEecCC-----CCeEEEcee-cCCcEEEEEEEeEEEEcCceeEE----EEecCCCC-
Q 012308 257 KSGWDEYGISYGRPSTKITIHGLIGETKL-----GAGIAIGSE-MSGGVSEVHAENLYFFNSVRGIR----IKTSPGRG- 325 (466)
Q Consensus 257 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gi~Igs~-~~~~v~nI~i~n~~i~~~~~Gi~----I~s~~g~~- 325 (466)
| .-...++||++..-. ...|..-+. ....-..+.|.||++........ .+..-|+.
T Consensus 372 --G-----------~a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~yLGRPW 438 (530)
T PLN02933 372 --G-----------NAAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAPDLIPVKENFKAYLGRPW 438 (530)
T ss_pred --c-----------CceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceEeccCC
Confidence 1 345677888775421 112222221 11234567888888876432111 11111222
Q ss_pred eeEEEEEEEceEEcCc
Q 012308 326 GYVRNISISNVTLNHV 341 (466)
Q Consensus 326 g~v~nI~~~ni~i~~~ 341 (466)
..-..+.|.+..|.+.
T Consensus 439 ~~ysrvVf~~s~l~~~ 454 (530)
T PLN02933 439 RKYSRTVIIKSFIDDL 454 (530)
T ss_pred CCCceEEEEecccCCe
Confidence 2345666777766653
No 67
>PLN02314 pectinesterase
Probab=96.99 E-value=0.11 Score=56.23 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=75.6
Q ss_pred EEeecceEEeeEEEecCCce----E-EEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecC
Q 012308 184 LMNSTGVIISNLTFLNPPFW----T-IHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKS 258 (466)
Q Consensus 184 ~~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 258 (466)
....+++..+|++|.|...- . -.....+...+.+|+|.+..+ -+... +..-..+||+|...=|-| +
T Consensus 361 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QD-----TLy~~-~~rq~y~~C~I~GtvDFI-F-- 431 (586)
T PLN02314 361 AAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQD-----TLYAH-SNRQFYRDCDITGTIDFI-F-- 431 (586)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccc-----hheeC-CCCEEEEeeEEEecccee-c--
Confidence 34577888889999887321 1 223456778888888887553 23222 344678888888754433 1
Q ss_pred CCCccCcccCCCceeEEEEEEEEecCC-----CCeEEEcee-cCCcEEEEEEEeEEEEcCceeEEEEecCCCC-eeEEEE
Q 012308 259 GWDEYGISYGRPSTKITIHGLIGETKL-----GAGIAIGSE-MSGGVSEVHAENLYFFNSVRGIRIKTSPGRG-GYVRNI 331 (466)
Q Consensus 259 g~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gi~Igs~-~~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~-g~v~nI 331 (466)
| .-...++||.+..-. ...|.--+. ....-..+.|.||++..... +..++.-|+. ..-..+
T Consensus 432 G-----------~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~-~~~~~yLGRpW~~ysr~ 499 (586)
T PLN02314 432 G-----------NAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFGN-LTAPTYLGRPWKDFSTT 499 (586)
T ss_pred c-----------CceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCCc-ccccccccCCCCCCceE
Confidence 1 356777888876421 122222221 11234567888888877532 1112222322 224455
Q ss_pred EEEceEEcCc
Q 012308 332 SISNVTLNHV 341 (466)
Q Consensus 332 ~~~ni~i~~~ 341 (466)
.|-+..|.+.
T Consensus 500 v~~~s~i~~~ 509 (586)
T PLN02314 500 VIMQSYIGSF 509 (586)
T ss_pred EEEecccCCc
Confidence 6666666553
No 68
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.97 E-value=0.11 Score=55.86 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=76.0
Q ss_pred EEeecceEEeeEEEecCCce----EE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecC
Q 012308 184 LMNSTGVIISNLTFLNPPFW----TI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKS 258 (466)
Q Consensus 184 ~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 258 (466)
....+++..++++|+|.... .+ .....+...+.+|+|.+..+ -+... +..-..++|+|...=|-| +
T Consensus 341 ~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD-----TLy~~-~~rq~y~~C~I~GtvDFI-F-- 411 (565)
T PLN02468 341 AVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQD-----TLYAH-AQRQFYRECNIYGTVDFI-F-- 411 (565)
T ss_pred eEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccc-----hhccC-CCceEEEeeEEeccccee-e--
Confidence 33567888899999886421 12 23457788888999887653 23222 244668888888754433 1
Q ss_pred CCCccCcccCCCceeEEEEEEEEecCC-----CCeEEEce-ecCCcEEEEEEEeEEEEcCceeEEEEecCCCC-eeEEEE
Q 012308 259 GWDEYGISYGRPSTKITIHGLIGETKL-----GAGIAIGS-EMSGGVSEVHAENLYFFNSVRGIRIKTSPGRG-GYVRNI 331 (466)
Q Consensus 259 g~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gi~Igs-~~~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~-g~v~nI 331 (466)
| .-...++||.+..-. ...|..-+ .....-..+.|.||++......-..++.-|+. ..-..+
T Consensus 412 G-----------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~yLGRPW~~~sr~ 480 (565)
T PLN02468 412 G-----------NSAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLGDLTSVKTFLGRPWKNYSTT 480 (565)
T ss_pred c-----------cceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCCCccccceeeecCCCCCceE
Confidence 1 456777888875321 12233321 11223456788888887653211112222222 233456
Q ss_pred EEEceEEcC
Q 012308 332 SISNVTLNH 340 (466)
Q Consensus 332 ~~~ni~i~~ 340 (466)
.|-+..|.+
T Consensus 481 v~~~s~~~~ 489 (565)
T PLN02468 481 VIMHSMMGS 489 (565)
T ss_pred EEEecccCC
Confidence 666666655
No 69
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.89 E-value=0.19 Score=54.33 Aligned_cols=138 Identities=10% Similarity=0.075 Sum_probs=79.4
Q ss_pred EEEeecceEEeeEEEecCCc----eEE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeec
Q 012308 183 ELMNSTGVIISNLTFLNPPF----WTI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIK 257 (466)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns~~----~~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 257 (466)
.....+++..+|++|+|+.. -.+ .....+...+.+|+|.+..+. +... ...-..++|+|...=|-| ++
T Consensus 367 ~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDT-----Ly~~-~~Rqyy~~C~I~GtVDFI-FG 439 (596)
T PLN02745 367 FVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDT-----LYAQ-THRQFYRSCVITGTIDFI-FG 439 (596)
T ss_pred EEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccc-----cccC-CCcEEEEeeEEEeeccEE-ec
Confidence 33467788999999998632 112 234578899999999886542 3222 345788999998755533 11
Q ss_pred CCCCccCcccCCCceeEEEEEEEEecCC-----CCeEEEcee-cCCcEEEEEEEeEEEEcCceeE----EEEecCCCC-e
Q 012308 258 SGWDEYGISYGRPSTKITIHGLIGETKL-----GAGIAIGSE-MSGGVSEVHAENLYFFNSVRGI----RIKTSPGRG-G 326 (466)
Q Consensus 258 sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gi~Igs~-~~~~v~nI~i~n~~i~~~~~Gi----~I~s~~g~~-g 326 (466)
.-...++||++.... ..-|.-.+. ....-..+.|.||++....... ..++.-|+. .
T Consensus 440 -------------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW~ 506 (596)
T PLN02745 440 -------------DAAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPWK 506 (596)
T ss_pred -------------ceeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCccccccccccceeccCCCC
Confidence 467788888886421 112222221 1123457888888887653211 112222322 3
Q ss_pred eEEEEEEEceEEcC
Q 012308 327 YVRNISISNVTLNH 340 (466)
Q Consensus 327 ~v~nI~~~ni~i~~ 340 (466)
.-..+.|-+..|.+
T Consensus 507 ~ysrvv~~~s~l~~ 520 (596)
T PLN02745 507 EFSRTIVMESTIED 520 (596)
T ss_pred CCccEEEEecccCC
Confidence 34566666666665
No 70
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.85 E-value=0.11 Score=55.54 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=62.3
Q ss_pred EEEEeecceEEeeEEEecCCce----EE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEee
Q 012308 182 VELMNSTGVIISNLTFLNPPFW----TI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSI 256 (466)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai 256 (466)
-.....+++..+|++|+|.... .+ .....+...+.+|+|.+..+. +... +..-..+||+|...=|-| +
T Consensus 317 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDT-----Ly~~-~~Rqyy~~C~I~GtVDFI-F 389 (548)
T PLN02301 317 TVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDT-----LYAH-SLRQFYRDSYITGTVDFI-F 389 (548)
T ss_pred EEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecccc-----ceec-CCcEEEEeeEEEecccee-c
Confidence 3344567888888888886421 12 224467788888888875432 2222 234577888887654433 1
Q ss_pred cCCCCccCcccCCCceeEEEEEEEEecCCC-----CeEEEce-ecCCcEEEEEEEeEEEEcC
Q 012308 257 KSGWDEYGISYGRPSTKITIHGLIGETKLG-----AGIAIGS-EMSGGVSEVHAENLYFFNS 312 (466)
Q Consensus 257 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~-----~gi~Igs-~~~~~v~nI~i~n~~i~~~ 312 (466)
| .-...++||++..-.. .-|..-+ .....-..+.|.||++...
T Consensus 390 --G-----------~a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 390 --G-----------NAAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred --c-----------cceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecC
Confidence 1 3566777777754210 1232221 1122345677777777764
No 71
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=96.71 E-value=0.23 Score=54.13 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=81.6
Q ss_pred EEeecceEEeeEEEecCCc----eEE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecC
Q 012308 184 LMNSTGVIISNLTFLNPPF----WTI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKS 258 (466)
Q Consensus 184 ~~~~~nv~I~~v~i~ns~~----~~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 258 (466)
....+++..+|++|+|... ..+ .....+...+.+|+|.+..+ -+... ...-..++|+|...=|-|-
T Consensus 333 ~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFIF--- 403 (670)
T PLN02217 333 AIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQD-----TLYAH-SHRQFYRDCTISGTIDFLF--- 403 (670)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccc-----hhccC-CCcEEEEeCEEEEeccEEe---
Confidence 3457788899999988742 122 23457889999999998653 23322 3457889999987544431
Q ss_pred CCCccCcccCCCceeEEEEEEEEecCC-----CCeEEEcee-cCCcEEEEEEEeEEEEcCceeEE----EEecCCCC-ee
Q 012308 259 GWDEYGISYGRPSTKITIHGLIGETKL-----GAGIAIGSE-MSGGVSEVHAENLYFFNSVRGIR----IKTSPGRG-GY 327 (466)
Q Consensus 259 g~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gi~Igs~-~~~~v~nI~i~n~~i~~~~~Gi~----I~s~~g~~-g~ 327 (466)
| .-...++||.+.... ..-|..-+. ....-..+.|.||++.....-+. .+.+-|+. ..
T Consensus 404 G-----------~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ 472 (670)
T PLN02217 404 G-----------DAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKE 472 (670)
T ss_pred c-----------CceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCccccccccccceeeccCCCC
Confidence 1 356788888886421 011222111 11234578999999987532111 11222322 33
Q ss_pred EEEEEEEceEEcCc
Q 012308 328 VRNISISNVTLNHV 341 (466)
Q Consensus 328 v~nI~~~ni~i~~~ 341 (466)
...+.|-+..|.+.
T Consensus 473 ysrvVf~~t~l~~~ 486 (670)
T PLN02217 473 YSRTIIMNTFIPDF 486 (670)
T ss_pred CceEEEEecccCCe
Confidence 56777777777653
No 72
>PLN02197 pectinesterase
Probab=96.69 E-value=0.21 Score=53.75 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=70.6
Q ss_pred EEEeecceEEeeEEEecCCce----EE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeec
Q 012308 183 ELMNSTGVIISNLTFLNPPFW----TI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIK 257 (466)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 257 (466)
.....+++..+|++|+|+... .+ .....+...+.+|+|....+ -+... ...-..++|+|...=|-| +
T Consensus 359 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQD-----TLy~~-~~Rqyy~~C~I~GtVDFI-F- 430 (588)
T PLN02197 359 VQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQD-----TLYVN-NGRQFYRNIVVSGTVDFI-F- 430 (588)
T ss_pred EEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCc-----ceEec-CCCEEEEeeEEEeccccc-c-
Confidence 334577888889999886421 12 22456778888888877543 23222 234577788887643433 1
Q ss_pred CCCCccCcccCCCceeEEEEEEEEecCCC-C---e-EEEceec--CCcEEEEEEEeEEEEcCcee----EEEEecCCCC-
Q 012308 258 SGWDEYGISYGRPSTKITIHGLIGETKLG-A---G-IAIGSEM--SGGVSEVHAENLYFFNSVRG----IRIKTSPGRG- 325 (466)
Q Consensus 258 sg~~~~g~~~~~~s~nI~I~n~~~~~~~~-~---g-i~Igs~~--~~~v~nI~i~n~~i~~~~~G----i~I~s~~g~~- 325 (466)
| .-...++||++..-.. . + |.-.+.. ...-..+.|.||++.....- ...++.-|+.
T Consensus 431 -G-----------~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGRPW 498 (588)
T PLN02197 431 -G-----------KSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASYLGRPW 498 (588)
T ss_pred -c-----------ceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCCcccccccccccccCCCC
Confidence 1 2346777777653200 1 1 1111111 12234577777777764310 1112222322
Q ss_pred eeEEEEEEEceEEcC
Q 012308 326 GYVRNISISNVTLNH 340 (466)
Q Consensus 326 g~v~nI~~~ni~i~~ 340 (466)
.....+.|-+..|.+
T Consensus 499 ~~ysrvV~~~s~~~~ 513 (588)
T PLN02197 499 KKFSTTVIISTEIGD 513 (588)
T ss_pred CCCceEEEEecccCC
Confidence 234556666666654
No 73
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.67 E-value=0.4 Score=51.79 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=75.8
Q ss_pred EEEeecceEEeeEEEecCCc----eEE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeec
Q 012308 183 ELMNSTGVIISNLTFLNPPF----WTI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIK 257 (466)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns~~----~~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 257 (466)
.....+++..++++|.|... -.+ .....+...+.+|+|....+ -+... +..-..++|+|...=|-|
T Consensus 355 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI--- 425 (587)
T PLN02484 355 FAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQD-----TLYVH-SNRQFFRECDIYGTVDFI--- 425 (587)
T ss_pred EEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCc-----ccccC-CCcEEEEecEEEecccee---
Confidence 34456788888888888632 122 22457788888888887653 23222 345678888888754433
Q ss_pred CCCCccCcccCCCceeEEEEEEEEecCC-----CCeEEEcee-cCCcEEEEEEEeEEEEcCceeE----EEEecCCCC-e
Q 012308 258 SGWDEYGISYGRPSTKITIHGLIGETKL-----GAGIAIGSE-MSGGVSEVHAENLYFFNSVRGI----RIKTSPGRG-G 326 (466)
Q Consensus 258 sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gi~Igs~-~~~~v~nI~i~n~~i~~~~~Gi----~I~s~~g~~-g 326 (466)
-| .-...++||++..-. ..-|.--+. ....-..+.|.||++.....-. ..++.-|+. .
T Consensus 426 FG-----------~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~ 494 (587)
T PLN02484 426 FG-----------NAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAASDLAASKGSFPTYLGRPWK 494 (587)
T ss_pred cc-----------cceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCCccccccCccceeccCCCC
Confidence 11 456777888886421 112222221 1123457788888887643100 111222222 3
Q ss_pred eEEEEEEEceEEcC
Q 012308 327 YVRNISISNVTLNH 340 (466)
Q Consensus 327 ~v~nI~~~ni~i~~ 340 (466)
....+.|-+..|.+
T Consensus 495 ~ysrvV~~~s~i~~ 508 (587)
T PLN02484 495 LYSRTVYMMSYMGD 508 (587)
T ss_pred CCceEEEEecccCC
Confidence 34566666666665
No 74
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.59 E-value=0.22 Score=53.73 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=58.4
Q ss_pred EEEeecceEEeeEEEecCCce----EE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeec
Q 012308 183 ELMNSTGVIISNLTFLNPPFW----TI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIK 257 (466)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 257 (466)
.....+++..+|++|+|.... .+ .....+...+.+|+|.+..+ -+... +..-..++|+|...=|-|-
T Consensus 357 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QD-----TLy~~-~~rq~y~~c~I~GtvDFIF-- 428 (587)
T PLN02313 357 VAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQD-----TLYVH-SNRQFFVKCHITGTVDFIF-- 428 (587)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccc-----hhccC-CCcEEEEeeEEeeccceec--
Confidence 334567888888888886421 11 12346777777777776543 22222 2345677777776444331
Q ss_pred CCCCccCcccCCCceeEEEEEEEEecCCC-----CeEEEce-ecCCcEEEEEEEeEEEEcC
Q 012308 258 SGWDEYGISYGRPSTKITIHGLIGETKLG-----AGIAIGS-EMSGGVSEVHAENLYFFNS 312 (466)
Q Consensus 258 sg~~~~g~~~~~~s~nI~I~n~~~~~~~~-----~gi~Igs-~~~~~v~nI~i~n~~i~~~ 312 (466)
| .-...++||.+..... .-|..-+ .....-..+.|.||++...
T Consensus 429 -G-----------~a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 429 -G-----------NAAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred -c-----------ceeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecC
Confidence 1 3556677777753210 1122211 1112234567777777654
No 75
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.58 E-value=0.29 Score=52.65 Aligned_cols=137 Identities=17% Similarity=0.111 Sum_probs=75.3
Q ss_pred EEeecceEEeeEEEecCCce----EE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecC
Q 012308 184 LMNSTGVIISNLTFLNPPFW----TI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKS 258 (466)
Q Consensus 184 ~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 258 (466)
....+++..+|++|.|.... .+ .....+...+.+|+|.+..+ -+... +..-..++|+|...=|-|-
T Consensus 343 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFIF--- 413 (572)
T PLN02990 343 AINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQD-----TLYVH-SHRQFFRDCTVSGTVDFIF--- 413 (572)
T ss_pred EEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccc-----hhccC-CCcEEEEeeEEecccceEc---
Confidence 34567888889999887431 12 23456788888999887543 23222 3456778888887545431
Q ss_pred CCCccCcccCCCceeEEEEEEEEecCC-C---Ce-EEEcee-cCCcEEEEEEEeEEEEcCceeEE----EEecCCCC-ee
Q 012308 259 GWDEYGISYGRPSTKITIHGLIGETKL-G---AG-IAIGSE-MSGGVSEVHAENLYFFNSVRGIR----IKTSPGRG-GY 327 (466)
Q Consensus 259 g~~~~g~~~~~~s~nI~I~n~~~~~~~-~---~g-i~Igs~-~~~~v~nI~i~n~~i~~~~~Gi~----I~s~~g~~-g~ 327 (466)
| .-...++||++..-. . .+ |.--+. ....-..+.|.||++........ .+++-|+. ..
T Consensus 414 G-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~yLGRpW~~ 482 (572)
T PLN02990 414 G-----------DAKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEPAYIPVKSINKAYLGRPWKE 482 (572)
T ss_pred c-----------CceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCccccccccccceEeecCCCC
Confidence 1 345777888885421 1 11 222111 11234567888888877532111 11111221 23
Q ss_pred EEEEEEEceEEcC
Q 012308 328 VRNISISNVTLNH 340 (466)
Q Consensus 328 v~nI~~~ni~i~~ 340 (466)
-..+.|.+..|.+
T Consensus 483 ysrvV~~~s~i~~ 495 (572)
T PLN02990 483 FSRTIIMGTTIDD 495 (572)
T ss_pred CceEEEEecccCC
Confidence 4566676666665
No 76
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=96.39 E-value=0.16 Score=48.73 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=71.3
Q ss_pred cceEEeeEEEecCCceEEE----EeccccEEEEeEEEEcCCCCCCCCCcCCC---CCccEEEEeeEEEc-----CC--ce
Q 012308 188 TGVIISNLTFLNPPFWTIH----PVYCSHVKVQNVTIRAPLDSPNTDGIDPD---SSDDVCIKDCYIST-----GD--DL 253 (466)
Q Consensus 188 ~nv~I~~v~i~ns~~~~i~----~~~~~nv~i~~~~i~~~~~~~n~DGi~~~---~s~nV~I~n~~i~~-----gD--D~ 253 (466)
.|++|+++++....+ +|. -..-+++.|.++++..- ..|.|... .-+++.|.+-.|.. |. =+
T Consensus 151 rnl~id~itv~~any-ailrqgfhnq~dgaritn~rfs~l----qgdaiewnvaindr~ilisdhvie~inctngkinwg 225 (464)
T PRK10123 151 RNLTIDNLTVSHANY-AILRQGFHNQIIGANITNCKFSDL----QGDAIEWNVAINDRDILISDHVIERINCTNGKINWG 225 (464)
T ss_pred hccEEccEEEeeccH-HHHhhhhhhccccceeeccccccc----cCceEEEEEEecccceeeehheheeecccCCcccce
Confidence 588899999876542 221 12345677777777653 35666542 34667776666553 11 01
Q ss_pred EeecCCCCccCccc--CCCceeEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCc-eeEEEEecCCCCeeEEE
Q 012308 254 VSIKSGWDEYGISY--GRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSV-RGIRIKTSPGRGGYVRN 330 (466)
Q Consensus 254 iai~sg~~~~g~~~--~~~s~nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~-~Gi~I~s~~g~~g~v~n 330 (466)
|.++-.-..|.-.| ....+|..+.|.+-.+. ..-+-+.....--++||..+|++=.-+. .||.=.+.. -=...|
T Consensus 226 igiglagstydn~ype~q~vknfvvanitgs~c-rqlvhvengkhfvirnvkaknitpdfskkagidnatva--iygcdn 302 (464)
T PRK10123 226 IGIGLAGSTYDNNYPEDQAVKNFVVANITGSDC-RQLIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVA--IYGCDN 302 (464)
T ss_pred eeeeeccccccCCCchhhhhhhEEEEeccCcCh-hheEEecCCcEEEEEeeeccccCCCchhhcCCCcceEE--EEcccc
Confidence 22211101111111 12356777777766543 2333333221123566666665543221 222211110 001468
Q ss_pred EEEEceEEcCc
Q 012308 331 ISISNVTLNHV 341 (466)
Q Consensus 331 I~~~ni~i~~~ 341 (466)
..++||.|.|+
T Consensus 303 fvidni~mvns 313 (464)
T PRK10123 303 FVIDNIEMINS 313 (464)
T ss_pred eEEeccccccc
Confidence 88888888875
No 77
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=94.45 E-value=1.4 Score=43.33 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHhhccccCCCcEEEecCCcceEeeEEee-cC--ceEEec
Q 012308 57 LNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLI-SH--LTLWLD 103 (466)
Q Consensus 57 ddT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~~l~l~-s~--~tL~l~ 103 (466)
++-.-||+|+|+|..-.....-.+.+-+|.|. +.+.++ ++ +||+.+
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~-e~v~Vp~~~~~ITLyGe 140 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ-ETVYVPAAPGGITLYGE 140 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceec-eeEEecCCCCceeEEec
Confidence 45566999999985210112346778999997 445444 33 777765
No 78
>PLN02682 pectinesterase family protein
Probab=94.10 E-value=3.2 Score=42.20 Aligned_cols=19 Identities=37% Similarity=0.350 Sum_probs=12.6
Q ss_pred EEEEeecceEEeeEEEecC
Q 012308 182 VELMNSTGVIISNLTFLNP 200 (466)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns 200 (466)
-.....+++..+|++|+|+
T Consensus 157 T~~v~a~~F~a~nlTf~Nt 175 (369)
T PLN02682 157 TFAVNSPYFIAKNITFKNT 175 (369)
T ss_pred EEEEECCCeEEEeeEEEcc
Confidence 3344566777777777775
No 79
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=94.08 E-value=0.34 Score=46.34 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=54.0
Q ss_pred eeEEEEEEEEecCCCCeEEEceec-CCcEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEEEEEceEEcCcceeEEEe
Q 012308 272 TKITIHGLIGETKLGAGIAIGSEM-SGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFT 348 (466)
Q Consensus 272 ~nI~I~n~~~~~~~~~gi~Igs~~-~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI~~~ni~i~~~~~~i~i~ 348 (466)
.+.+|+||+|.+...+||.+.... ...+.+++|+++.+.....|+.+.... .+ +. ..++|..+++...||.+.
T Consensus 122 s~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~--~~-~~-n~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 122 SSPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNA--AP-VE-NKIENNIIENNNIGIVAI 195 (246)
T ss_pred CCcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEccc--CC-cc-ceeeccEEEeCCcCeEee
Confidence 488999999988667898875443 567889999999999988999997654 22 22 344777777665677654
No 80
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=93.71 E-value=1.8 Score=40.51 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=29.5
Q ss_pred cEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEc-CCceEeecCC
Q 012308 212 HVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYIST-GDDLVSIKSG 259 (466)
Q Consensus 212 nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~sg 259 (466)
..+++|+.|-. +..||||..+ +-+|+|++.+. +.|++.++..
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~ 104 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGD 104 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESS
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCC
Confidence 45666666633 2368888876 77888888877 8899999874
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.77 E-value=0.1 Score=35.64 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=15.8
Q ss_pred CcCCCCCccEEEEeeEEEcCCceEeecC
Q 012308 231 GIDPDSSDDVCIKDCYISTGDDLVSIKS 258 (466)
Q Consensus 231 Gi~~~~s~nV~I~n~~i~~gDD~iai~s 258 (466)
||.++.+.+.+|+++.+....|||.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~ 28 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD 28 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe
Confidence 4455555555566666665555665554
No 82
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=91.40 E-value=18 Score=36.86 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=18.0
Q ss_pred eEEEEEEEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCceeE
Q 012308 273 KITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGI 316 (466)
Q Consensus 273 nI~I~n~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi 316 (466)
...|++|+|.+. ..|+.- .+...+.|++|+|....-||
T Consensus 167 ~~~VrGC~F~~C-~~gi~~-----~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 167 GGEVRGCTFYGC-WKGIVS-----RGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred CcEEeeeEEEEE-EEEeec-----CCcceEEeeheeeeheEEEE
Confidence 345555555543 233321 23445555555555554444
No 83
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=91.15 E-value=13 Score=38.07 Aligned_cols=65 Identities=22% Similarity=0.431 Sum_probs=37.9
Q ss_pred ceeEEEEEEEEecCCCCeEEEceecC--------C-----------cEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEE
Q 012308 271 STKITIHGLIGETKLGAGIAIGSEMS--------G-----------GVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNI 331 (466)
Q Consensus 271 s~nI~I~n~~~~~~~~~gi~Igs~~~--------~-----------~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI 331 (466)
+.|..++|.....+..+|+-+++... + --.|=.|+|+...++ .|+.+.. +|.+++|+||
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~~-DG~~~yvsni 340 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIGM-DGKGGYVSNI 340 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCEE-ECCS-EEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeeee-cCCCceEeeE
Confidence 67888999888777788998887521 0 034556666666665 5655553 3678899988
Q ss_pred EEEceE
Q 012308 332 SISNVT 337 (466)
Q Consensus 332 ~~~ni~ 337 (466)
+.+++.
T Consensus 341 ~~~d~~ 346 (549)
T PF09251_consen 341 TVQDCA 346 (549)
T ss_dssp EEES-S
T ss_pred Eeeccc
Confidence 887765
No 84
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=90.33 E-value=15 Score=34.47 Aligned_cols=129 Identities=19% Similarity=0.103 Sum_probs=83.6
Q ss_pred ecceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCc-cEEEEeeEEEcCCceEeecCCCCccCc
Q 012308 187 STGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSD-DVCIKDCYISTGDDLVSIKSGWDEYGI 265 (466)
Q Consensus 187 ~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~-nV~I~n~~i~~gDD~iai~sg~~~~g~ 265 (466)
-+..+|+++.|-.+...+||... +.+|+|+....- ..|.+.+.+.. .++|.+.-.++.+|=|-=..+
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng------ 127 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNG------ 127 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S------
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecC------
Confidence 46789999999766667899887 889999999863 36778887766 788888888886665533332
Q ss_pred ccCCCceeEEEEEEEEecCCCCeEEEceec---C--CcEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEEEEEc
Q 012308 266 SYGRPSTKITIHGLIGETKLGAGIAIGSEM---S--GGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISN 335 (466)
Q Consensus 266 ~~~~~s~nI~I~n~~~~~~~~~gi~Igs~~---~--~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI~~~n 335 (466)
.-.+.|.|.+.. +.|--+-|.. . +.-+++.+++........-+.|-...++...|+++.+..
T Consensus 128 -----~Gtv~I~nF~a~---d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 128 -----GGTVTIKNFYAE---DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp -----SEEEEEEEEEEE---EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred -----ceeEEEEeEEEc---CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 456888887665 3454443331 1 234567777665444333345555667777787777776
No 85
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=89.42 E-value=0.37 Score=32.88 Aligned_cols=40 Identities=23% Similarity=0.155 Sum_probs=26.0
Q ss_pred EEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEc
Q 012308 205 IHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYIST 249 (466)
Q Consensus 205 i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~ 249 (466)
|.+..+.+.+|++.++.. +.|||++..+++-+|+++.+..
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 455666666677777764 3567777777777777766654
No 86
>PLN02773 pectinesterase
Probab=89.15 E-value=7 Score=38.98 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=71.7
Q ss_pred EEeccccEEEEeEEEEcCCCCC--CCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEec
Q 012308 206 HPVYCSHVKVQNVTIRAPLDSP--NTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGET 283 (466)
Q Consensus 206 ~~~~~~nv~i~~~~i~~~~~~~--n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~ 283 (466)
.....+++..+|++|.|..... ..-.+.+ .+..+.+.||.|...-|-+..+. ..-.++||++.+
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v-~gDr~~f~~c~~~G~QDTL~~~~-------------gr~yf~~c~IeG 162 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRV-TADRCAFYNCRFLGWQDTLYLHY-------------GKQYLRDCYIEG 162 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEe-cCccEEEEccEeecccceeEeCC-------------CCEEEEeeEEee
Confidence 3446789999999999974321 1222223 36789999999999777776553 357789999987
Q ss_pred CCCCeEEEceecCCcEEEEEEEeEEEEcCceeEEEEecCCC-CeeEEEEEEEceEEcCc
Q 012308 284 KLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGR-GGYVRNISISNVTLNHV 341 (466)
Q Consensus 284 ~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~-~g~v~nI~~~ni~i~~~ 341 (466)
. --+-+|+ -...|++|++.....| .|-..... ...-....|.|+++...
T Consensus 163 ~--VDFIFG~------g~a~Fe~c~i~s~~~g-~ITA~~r~~~~~~~GfvF~~c~it~~ 212 (317)
T PLN02773 163 S--VDFIFGN------STALLEHCHIHCKSAG-FITAQSRKSSQESTGYVFLRCVITGN 212 (317)
T ss_pred c--ccEEeec------cEEEEEeeEEEEccCc-EEECCCCCCCCCCceEEEEccEEecC
Confidence 5 3344443 3578999999765444 23221100 01122467888888764
No 87
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=87.16 E-value=9.2 Score=34.73 Aligned_cols=123 Identities=20% Similarity=0.141 Sum_probs=69.4
Q ss_pred cceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEc-CC-------ceEeecCC
Q 012308 188 TGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYIST-GD-------DLVSIKSG 259 (466)
Q Consensus 188 ~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gD-------D~iai~sg 259 (466)
+||+|-+-+|.+...++|.+.+.. .+..-...++|.|.+..|.. |. .|| +.+|
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~------------------~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGI-v~sG 62 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYD------------------GSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGI-VTSG 62 (198)
T ss_pred CceEEecceeecccCceEEEEecC------------------CCCCccccccEEEECcEeecCCcCCCCceeeeE-Eecc
Confidence 467777777877777776665431 01111234567777766654 21 122 2222
Q ss_pred CCccCcccCCCceeEEEEEEEEecCCCCeEEEcee-----cCCcEEEEEEEeEEEEcCceeEEEEecCCCC--eeE----
Q 012308 260 WDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSE-----MSGGVSEVHAENLYFFNSVRGIRIKTSPGRG--GYV---- 328 (466)
Q Consensus 260 ~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi~Igs~-----~~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~--g~v---- 328 (466)
..|.+|+|++|.+....+|.-.-. ..+.-.-.+|+|+.|.++... +..+... |.+
T Consensus 63 -----------F~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~r---~~~~~GtGYgv~N~L~ 128 (198)
T PF08480_consen 63 -----------FYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRKR---KSSPAGTGYGVINYLP 128 (198)
T ss_pred -----------ccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeeec---ccCCCCceeEEEecCC
Confidence 688999999998876666654211 123344588899999887422 2222112 222
Q ss_pred --EEEEEEceEEcCcce
Q 012308 329 --RNISISNVTLNHVDV 343 (466)
Q Consensus 329 --~nI~~~ni~i~~~~~ 343 (466)
..+.++|..+-+...
T Consensus 129 ~tHsFvLenNclYnN~a 145 (198)
T PF08480_consen 129 ETHSFVLENNCLYNNAA 145 (198)
T ss_pred CcceEEEEccceeccCc
Confidence 456777777776543
No 88
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=86.53 E-value=2.6 Score=43.49 Aligned_cols=135 Identities=17% Similarity=0.088 Sum_probs=56.4
Q ss_pred ceEEeeEEEecCCc-eEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEc-C----CceEeecCCCCc
Q 012308 189 GVIISNLTFLNPPF-WTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYIST-G----DDLVSIKSGWDE 262 (466)
Q Consensus 189 nv~I~~v~i~ns~~-~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-g----DD~iai~sg~~~ 262 (466)
+.+|++-.+.++-. --|--..|.+-+|++.+|..+.. ++.+-...+-+|++++|.. + ..||-|-.
T Consensus 200 ~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Ntf~es~G-----~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~---- 270 (425)
T PF14592_consen 200 NTTVENNLFERCDGEVEIISVKSSDNTIRNNTFRESQG-----SLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIG---- 270 (425)
T ss_dssp --EEES-EEEEE-SSSEEEEEESBT-EEES-EEES-SS-----EEEEEE-SS-EEES-EEEE-SSSS-B--EEE-S----
T ss_pred ceeeecchhhhcCCceeEEEeecCCceEeccEEEeccc-----eEEEecCCCceEeccEEecCCCcCCCCceEEec----
Confidence 34444444443321 12333444455567777766431 2444444556666666654 2 12444432
Q ss_pred cCcccCCCceeEEEEEEEEecCC----CCeEEEceec-------CCcEEEEEEEeEEEEcCceeEEEEecC---------
Q 012308 263 YGISYGRPSTKITIHGLIGETKL----GAGIAIGSEM-------SGGVSEVHAENLYFFNSVRGIRIKTSP--------- 322 (466)
Q Consensus 263 ~g~~~~~~s~nI~I~n~~~~~~~----~~gi~Igs~~-------~~~v~nI~i~n~~i~~~~~Gi~I~s~~--------- 322 (466)
++=+|.|++|.+.. ..++++-... ...++|+.|.++++.++..+|.++.-.
T Consensus 271 ---------~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~i~~g~g~~~~~~~~~~ 341 (425)
T PF14592_consen 271 ---------EGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSPIHFGAGSDEERKDVLP 341 (425)
T ss_dssp ---------BS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SEEEESST-THHHHHHHHH
T ss_pred ---------CCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCCceEEccccccccccccc
Confidence 45556666665531 3344432211 124788888888888887777776521
Q ss_pred ---CCCeeEEEEEEEceEEcCc
Q 012308 323 ---GRGGYVRNISISNVTLNHV 341 (466)
Q Consensus 323 ---g~~g~v~nI~~~ni~i~~~ 341 (466)
-+...-.+++|.|..+.+.
T Consensus 342 ~~~i~s~~p~~~~~~nN~i~~~ 363 (425)
T PF14592_consen 342 ASNIRSARPINSTFANNIIYND 363 (425)
T ss_dssp HCT---B---SEEEES-EEE--
T ss_pred cccccccCCceEEeeCCeEEcC
Confidence 0223456777777777654
No 89
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=84.02 E-value=8 Score=35.10 Aligned_cols=15 Identities=27% Similarity=0.184 Sum_probs=7.3
Q ss_pred cEEEEEEEeEEEEcC
Q 012308 298 GVSEVHAENLYFFNS 312 (466)
Q Consensus 298 ~v~nI~i~n~~i~~~ 312 (466)
++.|.+|||+.|.+.
T Consensus 62 GF~ntlIENNVfDG~ 76 (198)
T PF08480_consen 62 GFYNTLIENNVFDGV 76 (198)
T ss_pred cccccEEEeeeeccc
Confidence 344455555555444
No 90
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=83.59 E-value=20 Score=36.97 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=24.1
Q ss_pred CCCcEEEecCCcceEeeEEeecCceEEec
Q 012308 75 KGGAKLFVPAGQWLTGSFDLISHLTLWLD 103 (466)
Q Consensus 75 ~gg~tV~iP~G~Y~~~~l~l~s~~tL~l~ 103 (466)
....-+++-.|+|....|.+.|.+.+..+
T Consensus 46 ~~e~LIFlH~G~~e~~~i~I~sdvqiiGA 74 (625)
T KOG1777|consen 46 DEEKLIFLHEGTHETETIRITSDVQIIGA 74 (625)
T ss_pred cccceEEEEeccccceEEEEcCCeeEecc
Confidence 34678899999999889999999888654
No 91
>PLN02634 probable pectinesterase
Probab=83.29 E-value=46 Score=33.82 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=9.8
Q ss_pred eecceEEeeEEEecC
Q 012308 186 NSTGVIISNLTFLNP 200 (466)
Q Consensus 186 ~~~nv~I~~v~i~ns 200 (466)
..+++..+|++|+|+
T Consensus 147 ~a~~F~a~niTf~Nt 161 (359)
T PLN02634 147 YANYFTARNISFKNT 161 (359)
T ss_pred ECCCeEEEeCeEEeC
Confidence 456666777777665
No 92
>PLN02480 Probable pectinesterase
Probab=83.08 E-value=23 Score=35.77 Aligned_cols=16 Identities=6% Similarity=0.179 Sum_probs=10.9
Q ss_pred EeecceEEeeEEEecC
Q 012308 185 MNSTGVIISNLTFLNP 200 (466)
Q Consensus 185 ~~~~nv~I~~v~i~ns 200 (466)
...++++++|++|+|+
T Consensus 129 V~a~~f~a~nLTf~Nt 144 (343)
T PLN02480 129 VEAPHFVAFGISIRND 144 (343)
T ss_pred EECCCEEEEeeEEEec
Confidence 3456777777777776
No 93
>PLN02432 putative pectinesterase
Probab=78.49 E-value=73 Score=31.49 Aligned_cols=16 Identities=19% Similarity=0.138 Sum_probs=9.8
Q ss_pred EeecceEEeeEEEecC
Q 012308 185 MNSTGVIISNLTFLNP 200 (466)
Q Consensus 185 ~~~~nv~I~~v~i~ns 200 (466)
...+++..+|++|+|.
T Consensus 91 v~a~~f~a~nlt~~Nt 106 (293)
T PLN02432 91 VLASDFVGRFLTIQNT 106 (293)
T ss_pred EECCCeEEEeeEEEeC
Confidence 3456666666666665
No 94
>PLN02665 pectinesterase family protein
Probab=78.46 E-value=44 Score=34.10 Aligned_cols=139 Identities=13% Similarity=0.097 Sum_probs=81.3
Q ss_pred EEeccccEEEEeEEEEcCCCCC-------CCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEE
Q 012308 206 HPVYCSHVKVQNVTIRAPLDSP-------NTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHG 278 (466)
Q Consensus 206 ~~~~~~nv~i~~~~i~~~~~~~-------n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n 278 (466)
....++++..+|++|.|....+ ..-.+.+ ......+.||.|....|-+.... ..-.++|
T Consensus 149 v~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v-~gDka~f~~C~f~G~QDTL~~~~-------------gr~yf~~ 214 (366)
T PLN02665 149 LIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRI-SGDKAAFYNCRFIGFQDTLCDDK-------------GRHFFKD 214 (366)
T ss_pred EEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEE-cCCcEEEEcceeccccceeEeCC-------------CCEEEEe
Confidence 3456789999999999964211 1112222 36789999999998777665443 3467899
Q ss_pred EEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCcee-EEEEecCCCC--eeEEEEEEEceEEcCcceeEEEeeecCCCC
Q 012308 279 LIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRG-IRIKTSPGRG--GYVRNISISNVTLNHVDVAIIFTGHFGEHP 355 (466)
Q Consensus 279 ~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~G-i~I~s~~g~~--g~v~nI~~~ni~i~~~~~~i~i~~~y~~~~ 355 (466)
|++.+. --+-+|. -...+++|++.....+ ...-+.+++. ..-....|.|+++......+++..-|
T Consensus 215 CyIeG~--VDFIFG~------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yLGRpW---- 282 (366)
T PLN02665 215 CYIEGT--VDFIFGS------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGRAW---- 282 (366)
T ss_pred eEEeec--cceeccc------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceeecCCC----
Confidence 999875 2333443 2557899998765433 1121222211 11235678889888754223332211
Q ss_pred CCCCCCCCCCeEEeEEEEEEEEee
Q 012308 356 DDSYDPSALPIIERITIKNVIGEN 379 (466)
Q Consensus 356 ~~~~~~~~~~~v~nIt~~nI~~~~ 379 (466)
. ....+.|.|-.+..
T Consensus 283 ----~-----~ysrvVf~~t~m~~ 297 (366)
T PLN02665 283 ----M-----SRPRVVFAYTEMSS 297 (366)
T ss_pred ----C-----CcceEEEEccccCC
Confidence 1 23467777766654
No 95
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=77.93 E-value=59 Score=34.68 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=32.2
Q ss_pred eecceEEeeEEEecCCce----EE-EEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCc
Q 012308 186 NSTGVIISNLTFLNPPFW----TI-HPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDD 252 (466)
Q Consensus 186 ~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD 252 (466)
..+++..+|++|+|.... .+ .....+...+.+|+|....+ -+... ...-..++|+|...=|
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QD-----TLy~~-~~rqyy~~C~I~G~vD 333 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQD-----TLYAA-ALRQFYRECDIYGTID 333 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccc-----hheeC-CCcEEEEeeEEEeccc
Confidence 456777777777776321 11 12345666677777765432 22222 2234566666665434
No 96
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=77.31 E-value=37 Score=36.67 Aligned_cols=113 Identities=15% Similarity=0.171 Sum_probs=69.9
Q ss_pred EeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCC
Q 012308 207 PVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKL 285 (466)
Q Consensus 207 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 285 (466)
....+++..+|++|.|.........+-+. .+..+.+.||.|....|-+..++ ..-.+++|++.+.
T Consensus 326 ~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~-------------~rq~y~~C~I~Gt- 391 (553)
T PLN02708 326 GVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHS-------------LRQFYKSCRIQGN- 391 (553)
T ss_pred EEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCC-------------CceEEEeeEEeec-
Confidence 34567999999999997542222222222 36789999999999777776654 2346899999876
Q ss_pred CCeEEEceecCCcEEEEEEEeEEEEcC------cee--EEEEecCCC--CeeEEEEEEEceEEcCc
Q 012308 286 GAGIAIGSEMSGGVSEVHAENLYFFNS------VRG--IRIKTSPGR--GGYVRNISISNVTLNHV 341 (466)
Q Consensus 286 ~~gi~Igs~~~~~v~nI~i~n~~i~~~------~~G--i~I~s~~g~--~g~v~nI~~~ni~i~~~ 341 (466)
--+-+|. -...|+||++.-. ..| -.| +.+++ ...-..+.|.|+++...
T Consensus 392 -VDFIFG~------a~avfq~c~i~~~~~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 392 -VDFIFGN------SAAVFQDCAILIAPRQLKPEKGENNAV-TAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred -CCEEecC------ceEEEEccEEEEeccccCCCCCCceEE-EeCCCCCCCCCceEEEEccEEecC
Confidence 3344442 3678999998732 111 122 22221 12234677888888653
No 97
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=75.72 E-value=32 Score=34.11 Aligned_cols=82 Identities=13% Similarity=0.162 Sum_probs=46.5
Q ss_pred eccccEEEEeEEEEcCCCCC--CCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCC
Q 012308 208 VYCSHVKVQNVTIRAPLDSP--NTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKL 285 (466)
Q Consensus 208 ~~~~nv~i~~~~i~~~~~~~--n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 285 (466)
...+++.++|++|.|..... ..-.+.+ .+.++.+.+|.|...-|-+.... ....++||++.+.
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~-------------~r~y~~~c~IeG~- 148 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANG-------------GRQYFKNCYIEGN- 148 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-S-------------SEEEEES-EEEES-
T ss_pred ccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeecc-------------ceeEEEeeEEEec-
Confidence 34678999999999864211 1223333 35778889999988766665543 3567788888864
Q ss_pred CCeEEEceecCCcEEEEEEEeEEEEc
Q 012308 286 GAGIAIGSEMSGGVSEVHAENLYFFN 311 (466)
Q Consensus 286 ~~gi~Igs~~~~~v~nI~i~n~~i~~ 311 (466)
--+-+|. -...|+||++..
T Consensus 149 -vDFIfG~------~~a~f~~c~i~~ 167 (298)
T PF01095_consen 149 -VDFIFGN------GTAVFENCTIHS 167 (298)
T ss_dssp -EEEEEES------SEEEEES-EEEE
T ss_pred -CcEEECC------eeEEeeeeEEEE
Confidence 3344442 145688888874
No 98
>PLN02176 putative pectinesterase
Probab=75.05 E-value=98 Score=31.26 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=9.0
Q ss_pred eecceEEeeEEEecC
Q 012308 186 NSTGVIISNLTFLNP 200 (466)
Q Consensus 186 ~~~nv~I~~v~i~ns 200 (466)
.++++..+|++|+|.
T Consensus 120 ~a~~F~a~nlT~~Nt 134 (340)
T PLN02176 120 YASNIIITGITFKNT 134 (340)
T ss_pred ECCCEEEEeeEEEeC
Confidence 355666666666654
No 99
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=71.99 E-value=75 Score=34.22 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=71.3
Q ss_pred EEEeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEec
Q 012308 205 IHPVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGET 283 (466)
Q Consensus 205 i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~ 283 (466)
......+++..+|++|.|.........+-+. .+.++.+.+|.|....|-+...+ ..-.++||++.+
T Consensus 313 T~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~-------------~rqyy~~C~I~G 379 (537)
T PLN02506 313 TVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS-------------LRQFYRECEIYG 379 (537)
T ss_pred EEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC-------------CceEEEeeEEec
Confidence 3456678999999999997532222222221 36889999999999777766554 235889999987
Q ss_pred CCCCeEEEceecCCcEEEEEEEeEEEEcCce----eEEEEecCCCC--eeEEEEEEEceEEcC
Q 012308 284 KLGAGIAIGSEMSGGVSEVHAENLYFFNSVR----GIRIKTSPGRG--GYVRNISISNVTLNH 340 (466)
Q Consensus 284 ~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~----Gi~I~s~~g~~--g~v~nI~~~ni~i~~ 340 (466)
. --+-+|. -...|+||++..... .-.|. .+++. ..-..+.|.|+++..
T Consensus 380 t--VDFIFG~------a~avfq~C~i~~r~~~~~~~~~iT-A~~r~~~~~~~G~vf~~c~i~~ 433 (537)
T PLN02506 380 T--IDFIFGN------GAAVLQNCKIYTRVPLPLQKVTIT-AQGRKSPHQSTGFSIQDSYVLA 433 (537)
T ss_pred c--cceEccC------ceeEEeccEEEEccCCCCCCceEE-ccCCCCCCCCcEEEEEcCEEcc
Confidence 5 3344442 357899999975321 11222 22211 122457788888875
No 100
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=71.22 E-value=62 Score=34.53 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=68.8
Q ss_pred EEEeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEec
Q 012308 205 IHPVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGET 283 (466)
Q Consensus 205 i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~ 283 (466)
-.....+++..+|++|.|.........+-+. .+....+.+|.|...-|-+....+ + -.+++|++.+
T Consensus 264 T~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~------------r-qyy~~C~I~G 330 (497)
T PLN02698 264 TFTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL------------R-QFYRECDIYG 330 (497)
T ss_pred eEEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC------------c-EEEEeeEEEe
Confidence 3345668999999999987532211222221 367899999999987777665542 3 4788999987
Q ss_pred CCCCeEEEceecCCcEEEEEEEeEEEEcCce--e--EEEEecCCC--CeeEEEEEEEceEEcCc
Q 012308 284 KLGAGIAIGSEMSGGVSEVHAENLYFFNSVR--G--IRIKTSPGR--GGYVRNISISNVTLNHV 341 (466)
Q Consensus 284 ~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~--G--i~I~s~~g~--~g~v~nI~~~ni~i~~~ 341 (466)
. --+-+|. -...|+||++..... | -.| +.+++ ...-..+.|.|+++...
T Consensus 331 ~--vDFIFG~------a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~G~vf~~c~i~~~ 385 (497)
T PLN02698 331 T--IDFIFGN------AAAVFQNCYLFLRRPHGKSYNVI-LANGRSDPGQNTGFSLQSCRIRTS 385 (497)
T ss_pred c--cceEecc------cceeecccEEEEecCCCCCceEE-EecCCCCCCCCceEEEEeeEEecC
Confidence 5 2334442 246788888864211 1 012 11221 12224577888888754
No 101
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=70.37 E-value=1e+02 Score=33.01 Aligned_cols=115 Identities=13% Similarity=0.108 Sum_probs=71.2
Q ss_pred EEEeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEec
Q 012308 205 IHPVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGET 283 (466)
Q Consensus 205 i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~ 283 (466)
......+++..+|++|.|.........+-+. .+....+.+|.|....|-+...+ ..-.+++|++.+
T Consensus 307 Tv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~-------------~Rqyy~~C~I~G 373 (529)
T PLN02170 307 TVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS-------------KRQFYRETDITG 373 (529)
T ss_pred EEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC-------------CCEEEEeeEEcc
Confidence 3445668899999999997532222222221 36789999999999777776554 234779999987
Q ss_pred CCCCeEEEceecCCcEEEEEEEeEEEEcCce---eEEEEecCCCC--eeEEEEEEEceEEcCc
Q 012308 284 KLGAGIAIGSEMSGGVSEVHAENLYFFNSVR---GIRIKTSPGRG--GYVRNISISNVTLNHV 341 (466)
Q Consensus 284 ~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~---Gi~I~s~~g~~--g~v~nI~~~ni~i~~~ 341 (466)
. --+-+|. -...|+||++..... .-.|. .+++. ..-..+.|.|+++...
T Consensus 374 t--VDFIFG~------a~avFq~C~I~~~~~~~~~g~IT-Aq~R~~~~~~~Gfvf~~C~it~~ 427 (529)
T PLN02170 374 T--VDFIFGN------SAVVFQSCNIAARKPSGDRNYVT-AQGRSDPNQNTGISIHNCRITAE 427 (529)
T ss_pred c--cceeccc------ceEEEeccEEEEecCCCCceEEE-ecCCCCCCCCceEEEEeeEEecC
Confidence 5 2333442 357889998875321 12232 22211 2234578888888764
No 102
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=69.68 E-value=88 Score=32.53 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=11.2
Q ss_pred CccEEEEeeEEEcCCceEee
Q 012308 237 SDDVCIKDCYISTGDDLVSI 256 (466)
Q Consensus 237 s~nV~I~n~~i~~gDD~iai 256 (466)
...+.+.+|.|...-|-+..
T Consensus 237 GDra~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 237 GDKVQIENVNILGRQDTFFV 256 (422)
T ss_pred CCcEEEEeeEEecccceeee
Confidence 45566666666665454443
No 103
>PLN02916 pectinesterase family protein
Probab=69.42 E-value=82 Score=33.57 Aligned_cols=114 Identities=17% Similarity=0.118 Sum_probs=69.0
Q ss_pred EEeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecC
Q 012308 206 HPVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETK 284 (466)
Q Consensus 206 ~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 284 (466)
.....+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...++ .-.+++|++.+.
T Consensus 272 ~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~Gt 338 (502)
T PLN02916 272 FGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL-------------RQFYRDCHIYGT 338 (502)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC-------------CEEEEecEEecc
Confidence 345567899999999987532222222222 367789999999987777766542 347799999875
Q ss_pred CCCeEEEceecCCcEEEEEEEeEEEEcCc----eeEEEEecCCC--CeeEEEEEEEceEEcCc
Q 012308 285 LGAGIAIGSEMSGGVSEVHAENLYFFNSV----RGIRIKTSPGR--GGYVRNISISNVTLNHV 341 (466)
Q Consensus 285 ~~~gi~Igs~~~~~v~nI~i~n~~i~~~~----~Gi~I~s~~g~--~g~v~nI~~~ni~i~~~ 341 (466)
--+-+|. -...|+||++.... ..-.|. .+++ ...-..+.|.|+++...
T Consensus 339 --VDFIFG~------a~avFq~C~I~~~~~~~~~~g~IT-Aq~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 339 --IDFIFGD------AAVVFQNCDIFVRRPMDHQGNMIT-AQGRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred --cceeccC------ceEEEecCEEEEecCCCCCcceEE-ecCCCCCCCCcEEEEEeeEEecC
Confidence 2333442 35678888886431 111222 1221 12224677888888753
No 104
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=68.90 E-value=64 Score=34.98 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=66.7
Q ss_pred EeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCC
Q 012308 207 PVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKL 285 (466)
Q Consensus 207 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 285 (466)
....+++..+|++|.|.........+-+. .+....+.+|.|....|-+...++ .-.+++|++.+.
T Consensus 336 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt- 401 (566)
T PLN02713 336 AVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL-------------RQFYRECDIYGT- 401 (566)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC-------------CEEEEeeEEecc-
Confidence 34458899999999986532222222221 357788999999887777666542 347889999875
Q ss_pred CCeEEEceecCCcEEEEEEEeEEEEcCc----eeEEEEecCCCC--eeEEEEEEEceEEcCc
Q 012308 286 GAGIAIGSEMSGGVSEVHAENLYFFNSV----RGIRIKTSPGRG--GYVRNISISNVTLNHV 341 (466)
Q Consensus 286 ~~gi~Igs~~~~~v~nI~i~n~~i~~~~----~Gi~I~s~~g~~--g~v~nI~~~ni~i~~~ 341 (466)
--+-+|. -...|+||.+.... ..-.|. .+++. ..-..+.|.|+++...
T Consensus 402 -VDFIFG~------a~avfq~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 402 -VDFIFGN------AAVVFQNCNLYPRLPMQGQFNTIT-AQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred -cceeccc------ceEEEeccEEEEecCCCCCcceee-ecCCCCCCCCCEEEEEcCEEecC
Confidence 2233332 35678888886431 001121 12211 1224577888887753
No 105
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=68.83 E-value=67 Score=34.68 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=68.7
Q ss_pred EEeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecC
Q 012308 206 HPVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETK 284 (466)
Q Consensus 206 ~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 284 (466)
.....+++..+|++|.|.........+-+. .+....+.+|.|....|-+..+++ .-.++||++.+.
T Consensus 318 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt 384 (548)
T PLN02301 318 VAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSL-------------RQFYRDSYITGT 384 (548)
T ss_pred EEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCC-------------cEEEEeeEEEec
Confidence 344567899999999986532222222222 367899999999997777666542 348899999875
Q ss_pred CCCeEEEceecCCcEEEEEEEeEEEEcCce----eEEEEecCCC--CeeEEEEEEEceEEcCc
Q 012308 285 LGAGIAIGSEMSGGVSEVHAENLYFFNSVR----GIRIKTSPGR--GGYVRNISISNVTLNHV 341 (466)
Q Consensus 285 ~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~----Gi~I~s~~g~--~g~v~nI~~~ni~i~~~ 341 (466)
--+-+|. -...|+||++.-... .-.| +.+++ ...-..+.|.|+++...
T Consensus 385 --VDFIFG~------a~avfq~c~i~~~~~~~~~~~~i-TAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 385 --VDFIFGN------AAVVFQNCKIVARKPMAGQKNMV-TAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred --cceeccc------ceeEEeccEEEEecCCCCCCceE-EecCCCCCCCCCEEEEEeeEEecC
Confidence 2333442 366788888864321 0112 11221 12234677888887753
No 106
>PLN02497 probable pectinesterase
Probab=68.69 E-value=1.4e+02 Score=30.17 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=9.5
Q ss_pred EeecceEEeeEEEecC
Q 012308 185 MNSTGVIISNLTFLNP 200 (466)
Q Consensus 185 ~~~~nv~I~~v~i~ns 200 (466)
...+++..+|++|.|+
T Consensus 112 v~a~~f~a~nlT~~Nt 127 (331)
T PLN02497 112 TLADNTVVKSITFANS 127 (331)
T ss_pred EecCCeEEEccEEEeC
Confidence 3455666666666665
No 107
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=67.41 E-value=75 Score=34.11 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=67.8
Q ss_pred EEeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecC
Q 012308 206 HPVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETK 284 (466)
Q Consensus 206 ~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 284 (466)
.....+++..+|++|.|.........+-+. .+....+.+|.|....|-+...++ .-.+++|++.+.
T Consensus 300 ~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~IeGt 366 (530)
T PLN02933 300 VGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA-------------KQFYRECDIYGT 366 (530)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC-------------ceEEEeeEEecc
Confidence 345567899999999986532222222222 367789999999987776665542 347899999875
Q ss_pred CCCeEEEceecCCcEEEEEEEeEEEEcCc----eeEEEEecCCCC--eeEEEEEEEceEEcC
Q 012308 285 LGAGIAIGSEMSGGVSEVHAENLYFFNSV----RGIRIKTSPGRG--GYVRNISISNVTLNH 340 (466)
Q Consensus 285 ~~~gi~Igs~~~~~v~nI~i~n~~i~~~~----~Gi~I~s~~g~~--g~v~nI~~~ni~i~~ 340 (466)
--+-+|. -...|+||.+.... ..-.|- .+++. ..-..+.|.|+++..
T Consensus 367 --VDFIFG~------a~avFq~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~tGfvf~~C~it~ 419 (530)
T PLN02933 367 --IDFIFGN------AAVVFQNCSLYARKPNPNHKIAFT-AQSRNQSDQPTGISIISSRILA 419 (530)
T ss_pred --cceeccC------ceEEEeccEEEEeccCCCCceEEE-ecCCCCCCCCceEEEEeeEEec
Confidence 3333442 34678888886431 111222 12211 122357788888765
No 108
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=65.57 E-value=1e+02 Score=33.68 Aligned_cols=113 Identities=11% Similarity=0.113 Sum_probs=67.9
Q ss_pred EeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCC
Q 012308 207 PVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKL 285 (466)
Q Consensus 207 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 285 (466)
....+++..+|++|.|.........+-+. .+....+.+|.|...-|-+.... ..-.++||++.+.
T Consensus 368 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~Gt- 433 (596)
T PLN02745 368 VALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT-------------HRQFYRSCVITGT- 433 (596)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC-------------CcEEEEeeEEEee-
Confidence 34668899999999986432111222221 36789999999998777665543 3457899999876
Q ss_pred CCeEEEceecCCcEEEEEEEeEEEEcCc----eeEEEEecCCCC--eeEEEEEEEceEEcCc
Q 012308 286 GAGIAIGSEMSGGVSEVHAENLYFFNSV----RGIRIKTSPGRG--GYVRNISISNVTLNHV 341 (466)
Q Consensus 286 ~~gi~Igs~~~~~v~nI~i~n~~i~~~~----~Gi~I~s~~g~~--g~v~nI~~~ni~i~~~ 341 (466)
--+-+|. -...|+||++.-.. ..-.|. .+++. ..-..+.|.|+++...
T Consensus 434 -VDFIFG~------a~avf~~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 434 -IDFIFGD------AAAIFQNCLIFVRKPLPNQQNTVT-AQGRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred -ccEEecc------eeEEEEecEEEEecCCCCCCceEE-ecCCCCCCCCceEEEEeeEEecC
Confidence 2244442 46788888886431 011222 22211 2234577888887753
No 109
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=65.09 E-value=1.3e+02 Score=32.40 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=68.5
Q ss_pred EEeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecC
Q 012308 206 HPVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETK 284 (466)
Q Consensus 206 ~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 284 (466)
.....+++..+|++|.|.........+-+. .+....+.+|.|....|-+....+ .-.+++|++.+.
T Consensus 288 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~Gt 354 (520)
T PLN02201 288 FAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM-------------RQFYRECRITGT 354 (520)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC-------------CEEEEeeEEeec
Confidence 345567899999999987532222222222 367899999999997777766542 346789999875
Q ss_pred CCCeEEEceecCCcEEEEEEEeEEEEcCc----eeEEEEecCCC--CeeEEEEEEEceEEcC
Q 012308 285 LGAGIAIGSEMSGGVSEVHAENLYFFNSV----RGIRIKTSPGR--GGYVRNISISNVTLNH 340 (466)
Q Consensus 285 ~~~gi~Igs~~~~~v~nI~i~n~~i~~~~----~Gi~I~s~~g~--~g~v~nI~~~ni~i~~ 340 (466)
--+-+|. -...|+||++.... ..-.|.. +++ ...-..+.|.|+++..
T Consensus 355 --VDFIFG~------a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~Gfvf~~C~it~ 407 (520)
T PLN02201 355 --VDFIFGD------ATAVFQNCQILAKKGLPNQKNTITA-QGRKDPNQPTGFSIQFSNISA 407 (520)
T ss_pred --ccEEecC------ceEEEEccEEEEecCCCCCCceEEe-cCCCCCCCCcEEEEEeeEEec
Confidence 3334442 35788999886521 1112221 221 1222357788888865
No 110
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=64.70 E-value=63 Score=35.70 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=70.6
Q ss_pred EeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCC
Q 012308 207 PVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKL 285 (466)
Q Consensus 207 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 285 (466)
....+++..+|++|.|.........+-+. .+....+.||.|....|-+.... ..-++++|++.+.
T Consensus 333 ~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~-------------~Rqyy~~C~I~Gt- 398 (670)
T PLN02217 333 AIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS-------------HRQFYRDCTISGT- 398 (670)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC-------------CcEEEEeCEEEEe-
Confidence 34567899999999987542222223222 36789999999998777666554 3457899999875
Q ss_pred CCeEEEceecCCcEEEEEEEeEEEEcCc----eeEEEEecCCCC--eeEEEEEEEceEEcCc
Q 012308 286 GAGIAIGSEMSGGVSEVHAENLYFFNSV----RGIRIKTSPGRG--GYVRNISISNVTLNHV 341 (466)
Q Consensus 286 ~~gi~Igs~~~~~v~nI~i~n~~i~~~~----~Gi~I~s~~g~~--g~v~nI~~~ni~i~~~ 341 (466)
--+-+|. -...|+||++.... ..-.|. .+++. ..-..+.|.|+++...
T Consensus 399 -VDFIFG~------a~avfq~C~I~~r~~~~~~~~~IT-Aqgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 399 -IDFLFGD------AAAVFQNCTLLVRKPLLNQACPIT-AHGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred -ccEEecC------ceEEEEccEEEEccCCCCCceeEe-cCCCCCCCCCceEEEEeeEEecC
Confidence 2333442 35789999997431 112232 23321 2234678888888764
No 111
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=64.45 E-value=1.1e+02 Score=32.54 Aligned_cols=113 Identities=11% Similarity=0.035 Sum_probs=69.2
Q ss_pred EeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCC
Q 012308 207 PVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKL 285 (466)
Q Consensus 207 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 285 (466)
....+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...+ ..-.+++|++.+.
T Consensus 280 ~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~-------------~RqyyrdC~I~Gt- 345 (509)
T PLN02488 280 ASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR-------------DRQFYRECFITGT- 345 (509)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC-------------CCEEEEeeEEeec-
Confidence 34567889999999986532222223222 36789999999998777766554 3457899999875
Q ss_pred CCeEEEceecCCcEEEEEEEeEEEEcCce----eEEEEecCCCC--eeEEEEEEEceEEcCc
Q 012308 286 GAGIAIGSEMSGGVSEVHAENLYFFNSVR----GIRIKTSPGRG--GYVRNISISNVTLNHV 341 (466)
Q Consensus 286 ~~gi~Igs~~~~~v~nI~i~n~~i~~~~~----Gi~I~s~~g~~--g~v~nI~~~ni~i~~~ 341 (466)
--+-+|. -...|+||++..... .-.|. .+++. ..-..+.|.|+++...
T Consensus 346 -VDFIFG~------a~avFq~C~I~sr~~~~~~~~~IT-Aq~R~~~~~~tGfvf~~C~it~~ 399 (509)
T PLN02488 346 -VDFICGN------AAAVFQFCQIVARQPMMGQSNVIT-AQSRESKDDNSGFSIQKCNITAS 399 (509)
T ss_pred -cceEecc------eEEEEEccEEEEecCCCCCCEEEE-eCCCCCCCCCcEEEEEeeEEecC
Confidence 2333442 467899999864311 11232 22221 1223577888888764
No 112
>PLN02671 pectinesterase
Probab=64.22 E-value=86 Score=31.92 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=12.0
Q ss_pred EEEeecceEEeeEEEecC
Q 012308 183 ELMNSTGVIISNLTFLNP 200 (466)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns 200 (466)
.....+++..+|++|+|.
T Consensus 149 v~v~a~~F~a~nitfeNt 166 (359)
T PLN02671 149 VTIESDYFCATGITFENT 166 (359)
T ss_pred EEEECCceEEEeeEEEcC
Confidence 344566777777777776
No 113
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=63.86 E-value=84 Score=34.11 Aligned_cols=113 Identities=16% Similarity=0.137 Sum_probs=62.6
Q ss_pred EeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCC
Q 012308 207 PVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKL 285 (466)
Q Consensus 207 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 285 (466)
....+++..+|++|.|.........+-+. .+....+.+|.|....|-+..++ ..-.++||++.+.
T Consensus 341 ~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~-------------~rq~y~~C~I~Gt- 406 (565)
T PLN02468 341 AVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA-------------QRQFYRECNIYGT- 406 (565)
T ss_pred eEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC-------------CceEEEeeEEecc-
Confidence 34457888888888876532111222221 35778888888888666655543 2345788888765
Q ss_pred CCeEEEceecCCcEEEEEEEeEEEEcCce----eEEEEecCCC--CeeEEEEEEEceEEcCc
Q 012308 286 GAGIAIGSEMSGGVSEVHAENLYFFNSVR----GIRIKTSPGR--GGYVRNISISNVTLNHV 341 (466)
Q Consensus 286 ~~gi~Igs~~~~~v~nI~i~n~~i~~~~~----Gi~I~s~~g~--~g~v~nI~~~ni~i~~~ 341 (466)
--+-+|. -...|+||++..... .-.|.. +++ ...-..+.|.|+++...
T Consensus 407 -vDFIFG~------a~avfq~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 407 -VDFIFGN------SAVVFQNCNILPRRPMKGQQNTITA-QGRTDPNQNTGISIQNCTILPL 460 (565)
T ss_pred -cceeecc------ceEEEeccEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEccEEecC
Confidence 2333432 356788888853210 111211 221 12234577777777753
No 114
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=63.07 E-value=70 Score=34.48 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=40.4
Q ss_pred eccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCCC
Q 012308 208 VYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLG 286 (466)
Q Consensus 208 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~ 286 (466)
...+++..+|++|.|.........+-+. .+....+.+|.|....|-+...+ ..-.+++|++.+.
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~Gt-- 373 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS-------------QRQFYRECYIYGT-- 373 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC-------------CceEEEeeEEeec--
Confidence 3455666666666664321111112111 24556666666666555444332 1235666666654
Q ss_pred CeEEEceecCCcEEEEEEEeEEEEc
Q 012308 287 AGIAIGSEMSGGVSEVHAENLYFFN 311 (466)
Q Consensus 287 ~gi~Igs~~~~~v~nI~i~n~~i~~ 311 (466)
--+-+|. -...|+||++..
T Consensus 374 VDFIFG~------a~avf~~C~i~~ 392 (539)
T PLN02995 374 VDFIFGN------AAAVFQNCIILP 392 (539)
T ss_pred cceEecc------cceEEeccEEEE
Confidence 2222331 244566666653
No 115
>PLN02304 probable pectinesterase
Probab=61.61 E-value=1.9e+02 Score=29.71 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=9.0
Q ss_pred eecceEEeeEEEecC
Q 012308 186 NSTGVIISNLTFLNP 200 (466)
Q Consensus 186 ~~~nv~I~~v~i~ns 200 (466)
..+++..+||+|+|+
T Consensus 160 ~a~~F~a~nITf~Nt 174 (379)
T PLN02304 160 FASNFIAKNISFMNV 174 (379)
T ss_pred ECCCeEEEeeEEEec
Confidence 355666666666664
No 116
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=60.31 E-value=1.1e+02 Score=33.38 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=64.9
Q ss_pred EEeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecC
Q 012308 206 HPVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETK 284 (466)
Q Consensus 206 ~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 284 (466)
.....+++..+|++|.|.........+-+. .+....+.||.|....|-+...+ ..-.+++|++.+.
T Consensus 355 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~-------------~Rqyy~~C~I~Gt 421 (587)
T PLN02484 355 FAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS-------------NRQFFRECDIYGT 421 (587)
T ss_pred EEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC-------------CcEEEEecEEEec
Confidence 345567888888888886532222222221 36778888888888777665544 2347788888865
Q ss_pred CCCeEEEceecCCcEEEEEEEeEEEEcCc----eeEEEEecCCC--CeeEEEEEEEceEEcC
Q 012308 285 LGAGIAIGSEMSGGVSEVHAENLYFFNSV----RGIRIKTSPGR--GGYVRNISISNVTLNH 340 (466)
Q Consensus 285 ~~~gi~Igs~~~~~v~nI~i~n~~i~~~~----~Gi~I~s~~g~--~g~v~nI~~~ni~i~~ 340 (466)
--+-+|. -...|+||++.... ..-.|. .+++ ...-..+.|.|+++..
T Consensus 422 --VDFIFG~------a~avfq~C~i~~~~~~~~~~~~IT-Aq~r~~~~~~~G~vf~~c~i~~ 474 (587)
T PLN02484 422 --VDFIFGN------AAVVLQNCSIYARKPMAQQKNTIT-AQNRKDPNQNTGISIHACRILA 474 (587)
T ss_pred --cceeccc------ceeEEeccEEEEecCCCCCceEEE-ecCCCCCCCCcEEEEEeeEEec
Confidence 2233332 35678888886421 111222 1221 1223457788888765
No 117
>PLN02314 pectinesterase
Probab=56.84 E-value=1.3e+02 Score=32.77 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=61.7
Q ss_pred EeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCC
Q 012308 207 PVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKL 285 (466)
Q Consensus 207 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 285 (466)
....+++..+|++|.|.........+-+. .+....+.+|.|....|-+...++ .-.++||++.+.
T Consensus 361 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~-------------rq~y~~C~I~Gt- 426 (586)
T PLN02314 361 AAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN-------------RQFYRDCDITGT- 426 (586)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC-------------CEEEEeeEEEec-
Confidence 34567788888888876432111222221 356677888888876666655442 346788888765
Q ss_pred CCeEEEceecCCcEEEEEEEeEEEEcCc-----eeEEEEecCCC--CeeEEEEEEEceEEcCc
Q 012308 286 GAGIAIGSEMSGGVSEVHAENLYFFNSV-----RGIRIKTSPGR--GGYVRNISISNVTLNHV 341 (466)
Q Consensus 286 ~~gi~Igs~~~~~v~nI~i~n~~i~~~~-----~Gi~I~s~~g~--~g~v~nI~~~ni~i~~~ 341 (466)
--+-+|. -...|+||.+.-.. .+ .| +.+++ ...-..+.|.|+++...
T Consensus 427 -vDFIFG~------a~avf~~c~i~~~~~~~~~~~-~i-TA~~r~~~~~~~G~vf~~c~i~~~ 480 (586)
T PLN02314 427 -IDFIFGN------AAVVFQNCNIQPRQPLPNQFN-TI-TAQGKKDPNQNTGISIQRCTISAF 480 (586)
T ss_pred -cceeccC------ceeeeeccEEEEecCCCCCCc-eE-ecCCCCCCCCCCEEEEEeeEEecC
Confidence 2233332 35678888885421 11 22 22222 12234567777777654
No 118
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=54.87 E-value=74 Score=34.33 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=67.8
Q ss_pred EeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCC
Q 012308 207 PVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKL 285 (466)
Q Consensus 207 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 285 (466)
....+++..+|++|.|.........+-+. .+..+.+.+|.|....|-+..++ ..-.+++|++.+.
T Consensus 313 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~Gt- 378 (541)
T PLN02416 313 AVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS-------------FRQFYRECDIYGT- 378 (541)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC-------------CceEEEeeEEeec-
Confidence 34468899999999987542222222221 36789999999998777665543 3458899999875
Q ss_pred CCeEEEceecCCcEEEEEEEeEEEEcCce--e--EEEEecCCCC--eeEEEEEEEceEEcC
Q 012308 286 GAGIAIGSEMSGGVSEVHAENLYFFNSVR--G--IRIKTSPGRG--GYVRNISISNVTLNH 340 (466)
Q Consensus 286 ~~gi~Igs~~~~~v~nI~i~n~~i~~~~~--G--i~I~s~~g~~--g~v~nI~~~ni~i~~ 340 (466)
--+-+|. -...|+||++..... | -.| +.+++. ..-..+.|.|+++..
T Consensus 379 -VDFIFG~------a~avfq~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~ 431 (541)
T PLN02416 379 -IDYIFGN------AAVVFQACNIVSKMPMPGQFTVI-TAQSRDTPDEDTGISIQNCSILA 431 (541)
T ss_pred -cceeecc------ceEEEeccEEEEecCCCCCceEE-ECCCCCCCCCCCEEEEEeeEEec
Confidence 2333442 356788888865321 1 122 222211 122467788888764
No 119
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=52.96 E-value=94 Score=33.53 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=69.0
Q ss_pred EEeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecC
Q 012308 206 HPVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETK 284 (466)
Q Consensus 206 ~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 284 (466)
.....+++..+|++|.|.........+-+. .+....+.+|.|....|-+...++ .-.++||++.+.
T Consensus 308 ~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~-------------rq~y~~c~I~Gt 374 (538)
T PLN03043 308 FAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL-------------RQFYRECDIYGT 374 (538)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC-------------cEEEEeeEEeec
Confidence 344568899999999986532222223222 357789999999987777665542 357899999875
Q ss_pred CCCeEEEceecCCcEEEEEEEeEEEEcCc----eeEEEEecCCCC--eeEEEEEEEceEEcCc
Q 012308 285 LGAGIAIGSEMSGGVSEVHAENLYFFNSV----RGIRIKTSPGRG--GYVRNISISNVTLNHV 341 (466)
Q Consensus 285 ~~~gi~Igs~~~~~v~nI~i~n~~i~~~~----~Gi~I~s~~g~~--g~v~nI~~~ni~i~~~ 341 (466)
--+-+|. -...|+||++.... ..-.|.. +++. ..-..+.|.|+++...
T Consensus 375 --VDFIFG~------a~avfq~c~i~~r~~~~~~~~~iTA-~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 375 --VDFIFGN------AAAIFQNCNLYARKPMANQKNAFTA-QGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred --cceEeec------ceeeeeccEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEecEEecC
Confidence 2333442 35688999886521 0111221 2211 1223577888888753
No 120
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=51.27 E-value=91 Score=34.03 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=62.1
Q ss_pred EeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCC
Q 012308 207 PVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKL 285 (466)
Q Consensus 207 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 285 (466)
....+++..+|++|.|.........+-+. .+....+.+|.|....|-+..+++ .-.+++|++.+.
T Consensus 358 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~-------------rq~y~~c~I~Gt- 423 (587)
T PLN02313 358 AAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN-------------RQFFVKCHITGT- 423 (587)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC-------------cEEEEeeEEeec-
Confidence 34456788888888876532221222221 356778888888876666655542 237788888765
Q ss_pred CCeEEEceecCCcEEEEEEEeEEEEcCc--ee-EEEEecCCCC--eeEEEEEEEceEEcCc
Q 012308 286 GAGIAIGSEMSGGVSEVHAENLYFFNSV--RG-IRIKTSPGRG--GYVRNISISNVTLNHV 341 (466)
Q Consensus 286 ~~gi~Igs~~~~~v~nI~i~n~~i~~~~--~G-i~I~s~~g~~--g~v~nI~~~ni~i~~~ 341 (466)
--+-+|. -...|+||++.-.. .| ...-+.+++. ..-..+.|.|+++...
T Consensus 424 -vDFIFG~------a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 424 -VDFIFGN------AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred -cceeccc------eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecC
Confidence 2233332 35678888886431 11 0111222221 1234577777777643
No 121
>PLN02197 pectinesterase
Probab=50.99 E-value=93 Score=33.91 Aligned_cols=113 Identities=12% Similarity=0.179 Sum_probs=65.5
Q ss_pred EeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCC
Q 012308 207 PVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKL 285 (466)
Q Consensus 207 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 285 (466)
....+++..+|++|.|.........+-+. .+....+.+|.|....|-+...++ .-.+++|++.+.
T Consensus 360 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~-------------Rqyy~~C~I~Gt- 425 (588)
T PLN02197 360 QVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG-------------RQFYRNIVVSGT- 425 (588)
T ss_pred EEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC-------------CEEEEeeEEEec-
Confidence 34567888889999886532122222222 367788889998887776665542 347788888865
Q ss_pred CCeEEEceecCCcEEEEEEEeEEEEcCc--ee--EEEEecCCCC---eeEEEEEEEceEEcCc
Q 012308 286 GAGIAIGSEMSGGVSEVHAENLYFFNSV--RG--IRIKTSPGRG---GYVRNISISNVTLNHV 341 (466)
Q Consensus 286 ~~gi~Igs~~~~~v~nI~i~n~~i~~~~--~G--i~I~s~~g~~---g~v~nI~~~ni~i~~~ 341 (466)
--+-+|. -...|+||++.-.. .| -.| +.+++. ..-..+.|.|+++...
T Consensus 426 -VDFIFG~------a~avfq~C~i~~r~~~~~~~~~i-TAqgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 426 -VDFIFGK------SATVIQNSLIVVRKGSKGQYNTV-TADGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred -ccccccc------eeeeeecCEEEEecCCCCCceeE-ECCCCCCCCCCCcEEEEEccEEecC
Confidence 2233332 23678888875321 11 122 223321 2234577888887753
No 122
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=48.27 E-value=1e+02 Score=33.58 Aligned_cols=113 Identities=14% Similarity=0.217 Sum_probs=65.5
Q ss_pred EeccccEEEEeEEEEcCCCCCCCCCcCCC-CCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCC
Q 012308 207 PVYCSHVKVQNVTIRAPLDSPNTDGIDPD-SSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKL 285 (466)
Q Consensus 207 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 285 (466)
....+++..+|++|.|.........+-+. .+....+.+|.|....|-+...+ ..-.+++|++.+.
T Consensus 343 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~Gt- 408 (572)
T PLN02990 343 AINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS-------------HRQFFRDCTVSGT- 408 (572)
T ss_pred EEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC-------------CcEEEEeeEEecc-
Confidence 34567888999999886532222222222 36778889999888777665544 2346788888875
Q ss_pred CCeEEEceecCCcEEEEEEEeEEEEcCc--ee--EEEEecCCCC--eeEEEEEEEceEEcCc
Q 012308 286 GAGIAIGSEMSGGVSEVHAENLYFFNSV--RG--IRIKTSPGRG--GYVRNISISNVTLNHV 341 (466)
Q Consensus 286 ~~gi~Igs~~~~~v~nI~i~n~~i~~~~--~G--i~I~s~~g~~--g~v~nI~~~ni~i~~~ 341 (466)
--+-+|. -...|+||++.... .| -.|. .+++. ..-..+.|.|+++...
T Consensus 409 -VDFIFG~------a~avf~~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~~G~vf~~C~it~~ 462 (572)
T PLN02990 409 -VDFIFGD------AKVVLQNCNIVVRKPMKGQSCMIT-AQGRSDVRESTGLVLQNCHITGE 462 (572)
T ss_pred -cceEccC------ceEEEEccEEEEecCCCCCceEEE-eCCCCCCCCCceEEEEeeEEecC
Confidence 2333342 35678888886421 11 1222 12211 1123577888887764
No 123
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=47.92 E-value=17 Score=20.46 Aligned_cols=19 Identities=37% Similarity=0.275 Sum_probs=8.7
Q ss_pred EEEEEeEEEEcCce-eEEEE
Q 012308 301 EVHAENLYFFNSVR-GIRIK 319 (466)
Q Consensus 301 nI~i~n~~i~~~~~-Gi~I~ 319 (466)
+++|++|++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 34455555544443 44443
No 124
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=40.52 E-value=15 Score=29.81 Aligned_cols=10 Identities=20% Similarity=0.059 Sum_probs=3.7
Q ss_pred chhHHHHHHH
Q 012308 4 SFTLVDVFLV 13 (466)
Q Consensus 4 ~~~~~~~~~~ 13 (466)
+..+++|+|+
T Consensus 3 SK~~llL~l~ 12 (95)
T PF07172_consen 3 SKAFLLLGLL 12 (95)
T ss_pred hhHHHHHHHH
Confidence 3333334333
No 125
>PRK09752 adhesin; Provisional
Probab=40.47 E-value=7e+02 Score=29.67 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=16.2
Q ss_pred EEEEEeEEEEcCc---eeEEEEecCCCCeeEEEEEEEceE
Q 012308 301 EVHAENLYFFNSV---RGIRIKTSPGRGGYVRNISISNVT 337 (466)
Q Consensus 301 nI~i~n~~i~~~~---~Gi~I~s~~g~~g~v~nI~~~ni~ 337 (466)
++.|.|+.|.+.. .|-.|-.......++-|+++++..
T Consensus 223 ~liI~NSsFtnNsA~~~GGAIY~~s~t~p~~~n~~~d~~~ 262 (1250)
T PRK09752 223 YTIINNTAFTNNTAEGYGGAIYTNSATAPYLIDISVDDSY 262 (1250)
T ss_pred eEEEeccEEEccccCCcceEEEecCCCCceEEEEEecccc
Confidence 4555566665432 233333322223444555555444
No 126
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=37.03 E-value=1.7e+02 Score=24.37 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=7.7
Q ss_pred ecceEEeeEEEec
Q 012308 187 STGVIISNLTFLN 199 (466)
Q Consensus 187 ~~nv~I~~v~i~n 199 (466)
..++.++|+++.+
T Consensus 44 ~~~~~~~G~~~~~ 56 (146)
T smart00722 44 SNDVRVDGITIGG 56 (146)
T ss_pred CCCCEEECeEEEe
Confidence 3455666666655
No 127
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=33.39 E-value=1.2e+02 Score=25.37 Aligned_cols=68 Identities=16% Similarity=-0.025 Sum_probs=44.4
Q ss_pred EeecceEEeeEEEecC---CceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEe-eEEEcCCceEe
Q 012308 185 MNSTGVIISNLTFLNP---PFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKD-CYISTGDDLVS 255 (466)
Q Consensus 185 ~~~~nv~I~~v~i~ns---~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n-~~i~~gDD~ia 255 (466)
....+..+.+-.+.+. ..+++.+..+.+..+.+.++. .. .. .+|++++...+..+.+ ..+....||+.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 5566677777666665 378888887777666666665 21 11 6888888877777777 44444555553
No 128
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=33.01 E-value=67 Score=23.12 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=14.0
Q ss_pred CCcCCCCCeeEEEeecCccCCCc
Q 012308 33 SNLEVFRPHSVSITEFGAVGDGV 55 (466)
Q Consensus 33 ~~~~~~~~~~~nV~dfGA~gDg~ 55 (466)
+++++.....-+=.|+-|.+|+.
T Consensus 35 a~~D~~~q~ekp~~d~~at~d~p 57 (58)
T COG5567 35 APPDQQTQSEKPDKDDRATGDGP 57 (58)
T ss_pred CCcccccccccCccCCcccCCCC
Confidence 34445555566667777777763
No 129
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=30.34 E-value=83 Score=25.31 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=20.4
Q ss_pred eecCccC-CCcchhHHHHHHHHHHhhccccCCCcEEEecCCcce
Q 012308 46 TEFGAVG-DGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWL 88 (466)
Q Consensus 46 ~dfGA~g-Dg~tddT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~ 88 (466)
.|||..+ +.....-+.|++||..-- ....||+ .|||+
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi----~~~~tv~--~GtYr 47 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHI----KNPDTVE--KGTYR 47 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHH----H-TT-EE----BET
T ss_pred cccCcccCCCChhhHHHHHHHHHHHh----CCCCeEe--cccee
Confidence 5899988 555566678999998764 3445644 99998
No 130
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=29.09 E-value=6.8e+02 Score=26.13 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=15.2
Q ss_pred EEEEEEEeEEEEcCc-eeEEEEecC
Q 012308 299 VSEVHAENLYFFNSV-RGIRIKTSP 322 (466)
Q Consensus 299 v~nI~i~n~~i~~~~-~Gi~I~s~~ 322 (466)
..|+.|+|++...+- .|+.+....
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDt 287 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADT 287 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-
T ss_pred eeeEEEeccceEEEeecceeccCCC
Confidence 567888888887764 788887763
No 131
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=24.74 E-value=1.2e+02 Score=32.38 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=12.7
Q ss_pred HHHHHHHhhccccCCCcEEEecCC
Q 012308 62 FQNAIFYLNSFADKGGAKLFVPAG 85 (466)
Q Consensus 62 iq~Ai~~a~~~~~~gg~tV~iP~G 85 (466)
|+.+|++.+ +..|..+++.+.
T Consensus 40 i~~vl~~~a---~~~g~nivv~~~ 60 (499)
T PRK15346 40 LAEVLHDLG---ANYGIPVVISPE 60 (499)
T ss_pred HHHHHHHHH---HHhCCCEEECcc
Confidence 555555554 355667777774
No 132
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=21.22 E-value=2.1e+02 Score=29.78 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=12.4
Q ss_pred CccEEEEeeEEEcCCceEeecC
Q 012308 237 SDDVCIKDCYISTGDDLVSIKS 258 (466)
Q Consensus 237 s~nV~I~n~~i~~gDD~iai~s 258 (466)
.+|=.|..+.|+.++.+|-+..
T Consensus 426 GsNP~i~~NkIWggqNGvLVyn 447 (625)
T KOG1777|consen 426 GSNPKIRRNKIWGGQNGVLVYN 447 (625)
T ss_pred CCCCeeeecceecCcccEEEEc
Confidence 3455566666666666654443
Done!