Query 012310
Match_columns 466
No_of_seqs 345 out of 1309
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 01:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2827 Uncharacterized conser 100.0 8.3E-42 1.8E-46 334.3 15.1 298 33-466 22-322 (322)
2 PF13019 Telomere_Sde2: Telome 100.0 1.7E-32 3.7E-37 252.8 12.1 128 11-139 1-144 (162)
3 PF13297 Telomere_Sde2_2: Telo 99.9 3.1E-26 6.8E-31 178.9 4.3 60 406-465 1-60 (60)
4 KOG0003 Ubiquitin/60s ribosoma 99.7 8.8E-18 1.9E-22 145.5 0.0 99 11-116 1-103 (128)
5 PTZ00044 ubiquitin; Provisiona 99.5 2.7E-14 5.8E-19 115.1 8.0 72 11-83 1-76 (76)
6 cd01793 Fubi Fubi ubiquitin-li 99.5 2.4E-14 5.1E-19 115.8 7.6 70 11-83 1-74 (74)
7 cd01802 AN1_N ubiquitin-like d 99.5 1.1E-13 2.4E-18 119.8 8.8 74 9-83 26-103 (103)
8 cd01803 Ubiquitin Ubiquitin. U 99.4 2.7E-13 5.9E-18 108.4 7.9 72 11-83 1-76 (76)
9 cd01807 GDX_N ubiquitin-like d 99.4 4E-13 8.7E-18 108.5 7.5 69 11-80 1-73 (74)
10 cd01810 ISG15_repeat2 ISG15 ub 99.4 3.8E-13 8.2E-18 108.7 7.3 70 13-83 1-74 (74)
11 cd01806 Nedd8 Nebb8-like ubiq 99.4 6E-13 1.3E-17 106.4 8.4 72 11-83 1-76 (76)
12 cd01797 NIRF_N amino-terminal 99.3 2.6E-12 5.6E-17 105.8 7.1 69 11-80 1-75 (78)
13 cd01804 midnolin_N Ubiquitin-l 99.3 5E-12 1.1E-16 103.7 8.0 73 10-84 1-77 (78)
14 KOG0004 Ubiquitin/40S ribosoma 99.2 5.3E-12 1.1E-16 116.0 3.8 73 11-84 1-77 (156)
15 cd01798 parkin_N amino-termina 99.2 2.1E-11 4.6E-16 97.3 6.6 66 13-79 1-70 (70)
16 cd01809 Scythe_N Ubiquitin-lik 99.2 3.6E-11 7.7E-16 95.2 7.5 68 11-79 1-72 (72)
17 cd01763 Sumo Small ubiquitin-r 99.2 7.2E-11 1.6E-15 98.8 9.3 76 7-83 8-87 (87)
18 cd01805 RAD23_N Ubiquitin-like 99.2 7.1E-11 1.5E-15 95.2 8.0 68 11-79 1-74 (77)
19 cd01791 Ubl5 UBL5 ubiquitin-li 99.2 8.1E-11 1.7E-15 96.0 7.3 67 10-77 1-71 (73)
20 cd01792 ISG15_repeat1 ISG15 ub 99.2 8E-11 1.7E-15 96.8 7.3 71 9-80 1-77 (80)
21 cd01794 DC_UbP_C dendritic cel 99.1 1.4E-10 3E-15 93.7 6.5 64 14-78 2-69 (70)
22 cd01800 SF3a120_C Ubiquitin-li 99.1 1.4E-10 3.1E-15 94.4 6.6 66 18-84 5-74 (76)
23 cd01808 hPLIC_N Ubiquitin-like 99.1 2E-10 4.4E-15 92.0 6.9 67 11-79 1-71 (71)
24 KOG2636 Splicing factor 3a, su 99.1 3.4E-11 7.4E-16 125.6 2.7 64 403-466 236-299 (497)
25 PF00240 ubiquitin: Ubiquitin 99.0 1.1E-09 2.4E-14 86.4 7.3 64 16-80 1-68 (69)
26 cd01790 Herp_N Homocysteine-re 99.0 1.2E-09 2.6E-14 90.9 6.6 68 10-78 1-78 (79)
27 cd01796 DDI1_N DNA damage indu 99.0 1.5E-09 3.3E-14 87.5 6.5 63 13-76 1-69 (71)
28 KOG2827 Uncharacterized conser 98.9 2.3E-10 4.9E-15 113.8 1.4 165 101-288 2-171 (322)
29 KOG0005 Ubiquitin-like protein 98.9 8.2E-10 1.8E-14 87.2 3.8 66 11-77 1-70 (70)
30 cd01812 BAG1_N Ubiquitin-like 98.9 5.7E-09 1.2E-13 82.6 6.4 65 11-77 1-69 (71)
31 smart00213 UBQ Ubiquitin homol 98.8 1E-08 2.2E-13 78.5 6.4 59 11-71 1-59 (64)
32 TIGR00601 rad23 UV excision re 98.7 3.3E-08 7.1E-13 103.3 7.5 67 11-78 1-74 (378)
33 cd01813 UBP_N UBP ubiquitin pr 98.6 9.5E-08 2.1E-12 78.0 6.3 58 11-70 1-61 (74)
34 cd01814 NTGP5 Ubiquitin-like N 98.5 7.4E-08 1.6E-12 85.0 4.7 75 9-84 3-95 (113)
35 cd01799 Hoil1_N Ubiquitin-like 98.4 8.9E-07 1.9E-11 72.7 6.7 60 17-78 9-74 (75)
36 cd01815 BMSC_UbP_N Ubiquitin-l 98.3 6.3E-07 1.4E-11 74.1 4.1 48 31-78 20-74 (75)
37 PF11976 Rad60-SLD: Ubiquitin- 98.3 2.2E-06 4.9E-11 68.3 7.1 67 11-78 1-72 (72)
38 cd01769 UBL Ubiquitin-like dom 98.3 2.8E-06 6.1E-11 65.8 6.9 62 15-77 2-67 (69)
39 KOG0010 Ubiquitin-like protein 98.2 2.6E-06 5.6E-11 90.9 6.7 71 9-81 14-88 (493)
40 KOG0001 Ubiquitin and ubiquiti 98.2 9.7E-06 2.1E-10 61.9 8.1 70 12-82 1-74 (75)
41 cd01795 USP48_C USP ubiquitin- 98.1 6.5E-06 1.4E-10 71.5 5.7 58 23-81 17-79 (107)
42 KOG0011 Nucleotide excision re 98.1 5.6E-06 1.2E-10 84.7 6.2 60 11-71 1-62 (340)
43 KOG4248 Ubiquitin-like protein 97.7 4.6E-05 1E-09 87.1 5.6 70 11-81 3-75 (1143)
44 PF13881 Rad60-SLD_2: Ubiquiti 97.5 0.00041 8.9E-09 61.3 8.5 73 10-83 2-92 (111)
45 cd01789 Alp11_N Ubiquitin-like 97.5 0.00054 1.2E-08 57.2 8.2 66 11-77 2-79 (84)
46 cd00196 UBQ Ubiquitin-like pro 97.0 0.0029 6.3E-08 45.0 6.6 62 15-77 2-67 (69)
47 cd01788 ElonginB Ubiquitin-lik 97.0 0.0023 5.1E-08 57.0 7.1 60 11-71 1-61 (119)
48 PF14560 Ubiquitin_2: Ubiquiti 97.0 0.0034 7.4E-08 52.3 7.6 60 11-71 2-71 (87)
49 PLN02560 enoyl-CoA reductase 96.9 0.0027 5.8E-08 65.2 7.9 59 11-70 1-70 (308)
50 KOG1769 Ubiquitin-like protein 96.6 0.019 4.1E-07 50.0 9.6 75 9-84 19-97 (99)
51 PF11543 UN_NPL4: Nuclear pore 96.0 0.013 2.8E-07 48.9 5.3 45 10-56 4-48 (80)
52 cd01811 OASL_repeat1 2'-5' oli 95.8 0.032 7E-07 46.5 6.7 68 11-80 1-73 (80)
53 KOG0006 E3 ubiquitin-protein l 95.8 0.014 3.1E-07 60.1 5.7 58 11-69 1-61 (446)
54 cd01801 Tsc13_N Ubiquitin-like 95.6 0.03 6.6E-07 45.7 5.8 46 25-70 16-64 (77)
55 PF10302 DUF2407: DUF2407 ubiq 95.6 0.03 6.4E-07 48.5 5.9 56 13-68 3-62 (97)
56 PF00789 UBX: UBX domain; Int 94.5 0.37 7.9E-06 39.3 9.1 61 8-69 4-69 (82)
57 PF11470 TUG-UBL1: GLUT4 regul 93.6 0.22 4.7E-06 40.3 6.0 49 17-66 3-51 (65)
58 PRK08364 sulfur carrier protei 90.1 1.9 4E-05 34.8 7.7 65 10-83 4-70 (70)
59 PF09379 FERM_N: FERM N-termin 89.8 1.5 3.4E-05 35.1 7.1 54 15-69 1-61 (80)
60 PLN02799 Molybdopterin synthas 89.3 1.4 3E-05 36.1 6.5 72 10-83 1-82 (82)
61 COG5227 SMT3 Ubiquitin-like pr 88.6 0.94 2E-05 39.3 5.1 62 7-69 21-82 (103)
62 KOG4495 RNA polymerase II tran 88.4 0.64 1.4E-05 40.7 4.0 57 12-69 2-61 (110)
63 PRK06437 hypothetical protein; 88.3 2.7 5.8E-05 33.8 7.4 64 14-83 4-67 (67)
64 smart00166 UBX Domain present 87.6 2.6 5.6E-05 34.5 7.0 54 9-63 3-58 (80)
65 KOG1872 Ubiquitin-specific pro 86.0 1.7 3.6E-05 47.3 6.4 66 10-77 3-73 (473)
66 cd01767 UBX UBX (ubiquitin reg 85.3 4.1 9E-05 33.0 7.1 52 10-63 2-55 (77)
67 smart00295 B41 Band 4.1 homolo 83.9 7.9 0.00017 35.8 9.2 41 9-50 2-42 (207)
68 KOG4583 Membrane-associated ER 83.8 0.74 1.6E-05 48.2 2.5 68 1-69 1-71 (391)
69 cd00754 MoaD Ubiquitin domain 83.7 4.1 8.9E-05 32.6 6.4 59 23-83 18-80 (80)
70 cd01774 Faf1_like2_UBX Faf1 ik 83.4 5 0.00011 33.8 7.0 52 9-62 3-56 (85)
71 PF12754 Blt1: Cell-cycle cont 83.0 0.37 8.1E-06 49.7 0.0 62 8-69 76-156 (309)
72 cd01771 Faf1_UBX Faf1 UBX doma 82.9 5.3 0.00011 33.3 6.8 52 9-62 3-56 (80)
73 smart00455 RBD Raf-like Ras-bi 81.9 7.5 0.00016 31.6 7.2 45 13-58 2-46 (70)
74 cd01773 Faf1_like1_UBX Faf1 ik 81.5 7.3 0.00016 33.0 7.2 53 8-62 3-57 (82)
75 cd01770 p47_UBX p47-like ubiqu 81.3 8.2 0.00018 32.0 7.4 58 10-68 4-65 (79)
76 cd06409 PB1_MUG70 The MUG70 pr 81.3 4.2 9.1E-05 34.8 5.7 44 12-56 2-48 (86)
77 cd01760 RBD Ubiquitin-like dom 80.3 4.7 0.0001 33.2 5.5 44 13-57 2-45 (72)
78 PF08817 YukD: WXG100 protein 79.2 6 0.00013 32.4 5.9 66 10-76 2-78 (79)
79 TIGR01682 moaD molybdopterin c 77.4 12 0.00026 30.4 7.2 63 20-83 14-80 (80)
80 PF02196 RBD: Raf-like Ras-bin 77.1 19 0.00042 29.2 8.2 51 13-64 3-55 (71)
81 cd01772 SAKS1_UBX SAKS1-like U 76.0 12 0.00025 30.9 6.7 52 10-63 4-57 (79)
82 smart00666 PB1 PB1 domain. Pho 75.3 12 0.00026 30.2 6.6 44 12-57 3-46 (81)
83 PRK06944 sulfur carrier protei 73.8 18 0.00039 28.1 7.0 57 19-83 6-65 (65)
84 cd06406 PB1_P67 A PB1 domain i 70.9 16 0.00034 31.0 6.3 36 22-58 12-47 (80)
85 cd00565 ThiS ThiaminS ubiquiti 70.8 17 0.00036 28.6 6.2 58 18-83 4-65 (65)
86 PF02597 ThiS: ThiS family; I 67.1 18 0.00039 28.6 5.8 60 22-83 13-77 (77)
87 PRK06488 sulfur carrier protei 66.9 26 0.00056 27.5 6.6 58 18-83 5-65 (65)
88 TIGR01687 moaD_arch MoaD famil 63.3 30 0.00064 28.5 6.6 61 20-83 14-88 (88)
89 KOG3493 Ubiquitin-like protein 62.9 3.2 7E-05 34.0 0.7 59 11-70 2-60 (73)
90 cd01782 AF6_RA_repeat1 Ubiquit 62.1 78 0.0017 28.5 9.2 39 9-48 22-62 (112)
91 PRK08053 sulfur carrier protei 62.0 55 0.0012 25.8 7.6 63 11-83 1-66 (66)
92 cd06407 PB1_NLP A PB1 domain i 61.4 27 0.00059 29.3 6.0 38 18-56 7-45 (82)
93 PRK05659 sulfur carrier protei 59.2 48 0.001 25.8 6.8 58 18-83 5-66 (66)
94 PRK11130 moaD molybdopterin sy 57.8 48 0.001 27.2 6.8 59 24-83 18-81 (81)
95 PRK06083 sulfur carrier protei 55.5 84 0.0018 26.6 8.0 66 8-83 16-84 (84)
96 COG2104 ThiS Sulfur transfer p 55.3 79 0.0017 25.8 7.5 64 10-83 2-68 (68)
97 PF00564 PB1: PB1 domain; Int 55.2 46 0.00099 26.7 6.3 45 11-57 2-47 (84)
98 TIGR01683 thiS thiamine biosyn 55.1 67 0.0014 25.1 7.0 59 18-83 3-64 (64)
99 cd05992 PB1 The PB1 domain is 54.8 43 0.00092 26.7 6.0 43 13-56 3-45 (81)
100 PRK07440 hypothetical protein; 53.0 91 0.002 25.2 7.6 63 10-83 4-70 (70)
101 cd01768 RA RA (Ras-associating 52.2 50 0.0011 26.9 6.1 35 20-55 12-48 (87)
102 PF14453 ThiS-like: ThiS-like 51.6 60 0.0013 25.9 6.1 54 11-77 1-54 (57)
103 PF14451 Ub-Mut7C: Mut7-C ubiq 50.7 50 0.0011 27.8 5.9 52 21-78 23-75 (81)
104 cd01817 RGS12_RBD Ubiquitin do 50.3 45 0.00097 27.9 5.4 46 15-61 4-51 (73)
105 PF08783 DWNN: DWNN domain; I 50.0 1E+02 0.0022 25.8 7.5 35 13-47 1-36 (74)
106 PF02017 CIDE-N: CIDE-N domain 48.9 1E+02 0.0023 26.0 7.5 63 13-79 5-71 (78)
107 cd01777 SNX27_RA Ubiquitin dom 48.4 30 0.00065 29.8 4.3 40 11-51 2-41 (87)
108 PF00788 RA: Ras association ( 47.5 68 0.0015 25.9 6.2 40 15-55 7-52 (93)
109 smart00314 RA Ras association 46.4 74 0.0016 26.1 6.3 45 10-55 4-51 (90)
110 smart00144 PI3K_rbd PI3-kinase 45.9 2E+02 0.0044 25.0 9.4 70 9-79 16-104 (108)
111 PF15044 CLU_N: Mitochondrial 45.9 28 0.00061 28.8 3.6 49 30-78 3-57 (76)
112 PRK05863 sulfur carrier protei 44.9 94 0.002 24.5 6.4 58 18-83 5-65 (65)
113 PF14847 Ras_bdg_2: Ras-bindin 44.3 45 0.00098 29.5 4.9 36 13-49 3-38 (105)
114 cd06408 PB1_NoxR The PB1 domai 43.1 1E+02 0.0022 26.4 6.7 45 10-57 2-46 (86)
115 cd06396 PB1_NBR1 The PB1 domai 41.8 71 0.0015 27.1 5.5 37 17-56 6-44 (81)
116 PRK07696 sulfur carrier protei 41.7 1.1E+02 0.0023 24.5 6.3 60 18-83 5-67 (67)
117 cd01615 CIDE_N CIDE_N domain, 39.4 60 0.0013 27.4 4.7 47 32-78 21-70 (78)
118 cd01818 TIAM1_RBD Ubiquitin do 39.3 56 0.0012 27.6 4.4 40 14-54 3-42 (77)
119 KOG3241 Uncharacterized conser 37.3 81 0.0018 30.8 5.7 68 164-231 116-204 (227)
120 cd06398 PB1_Joka2 The PB1 doma 37.1 1.2E+02 0.0026 26.1 6.2 39 18-56 7-50 (91)
121 PTZ00380 microtubule-associate 36.8 93 0.002 28.4 5.8 61 8-69 25-88 (121)
122 PRK01777 hypothetical protein; 36.7 2.7E+02 0.0058 24.1 8.4 65 10-80 3-77 (95)
123 smart00266 CAD Domains present 36.2 74 0.0016 26.7 4.7 48 31-78 18-68 (74)
124 KOG1639 Steroid reductase requ 35.7 74 0.0016 32.6 5.4 72 11-82 1-80 (297)
125 cd01766 Ufm1 Urm1-like ubiquit 35.3 1.8E+02 0.0039 24.7 6.7 71 10-81 4-80 (82)
126 PF03671 Ufm1: Ubiquitin fold 34.9 2.2E+02 0.0048 24.0 7.1 53 23-76 18-75 (76)
127 cd01787 GRB7_RA RA (RAS-associ 34.8 1.5E+02 0.0032 25.5 6.4 40 12-52 4-43 (85)
128 KOG2086 Protein tyrosine phosp 34.3 1.2E+02 0.0027 32.6 7.0 61 8-69 303-367 (380)
129 cd06411 PB1_p51 The PB1 domain 34.1 75 0.0016 26.9 4.4 35 22-57 8-42 (78)
130 cd06539 CIDE_N_A CIDE_N domain 34.0 2E+02 0.0043 24.4 6.9 47 32-78 21-70 (78)
131 PRK11840 bifunctional sulfur c 32.0 1.5E+02 0.0033 31.3 7.2 65 11-85 1-68 (326)
132 cd06410 PB1_UP2 Uncharacterize 31.3 1.6E+02 0.0034 25.7 6.1 40 15-56 17-56 (97)
133 KOG4250 TANK binding protein k 30.5 72 0.0016 36.9 4.9 41 19-60 323-363 (732)
134 cd06397 PB1_UP1 Uncharacterize 30.1 1.3E+02 0.0029 25.7 5.2 43 12-56 2-44 (82)
135 KOG0013 Uncharacterized conser 28.4 99 0.0021 31.0 4.8 49 20-69 156-204 (231)
136 KOG3206 Alpha-tubulin folding 28.2 2.8E+02 0.0061 27.9 7.9 44 11-55 2-46 (234)
137 PF02824 TGS: TGS domain; Int 28.2 1.4E+02 0.0031 23.2 4.9 58 13-76 1-58 (60)
138 PF01020 Ribosomal_L40e: Ribos 27.5 26 0.00056 27.5 0.5 31 87-121 2-33 (52)
139 PF02037 SAP: SAP domain; Int 26.8 52 0.0011 23.2 2.0 28 420-447 4-31 (35)
140 PF00794 PI3K_rbd: PI3-kinase 26.6 4E+02 0.0087 22.7 7.9 62 8-70 14-84 (106)
141 cd01611 GABARAP Ubiquitin doma 26.5 2.4E+02 0.0052 25.1 6.6 61 8-69 22-89 (112)
142 PRK10872 relA (p)ppGpp synthet 25.4 9.3E+02 0.02 28.3 12.6 113 12-151 405-517 (743)
143 cd06536 CIDE_N_ICAD CIDE_N dom 23.8 4E+02 0.0087 22.7 7.0 47 32-78 21-72 (80)
144 PF09959 DUF2193: Uncharacteri 23.5 2.1E+02 0.0045 31.3 6.5 34 20-53 136-169 (499)
145 cd01764 Urm1 Urm1-like ubuitin 22.0 4.2E+02 0.009 22.6 7.0 60 22-83 18-94 (94)
146 cd01775 CYR1_RA Ubiquitin doma 21.8 3.9E+02 0.0085 23.6 6.8 32 18-50 10-41 (97)
147 KOG3439 Protein conjugation fa 20.4 3E+02 0.0065 25.0 5.9 52 9-61 29-84 (116)
No 1
>KOG2827 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.3e-42 Score=334.33 Aligned_cols=298 Identities=34% Similarity=0.460 Sum_probs=185.9
Q ss_pred CHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCCCceeEEeeecCCCcccCcchhhhhhhhccccccCccccccc
Q 012310 33 YGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGGKGGFGSLLRGAATKAGQKKTNNFDACRDM 112 (466)
Q Consensus 33 TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GGKGGFGS~LRa~g~r~~~kKt~n~daCRdL 112 (466)
-+.+..+.+...+..|+..++++.+++.|..-.... +..+++.+|.+||||||||||||.+ .+..+++|+++||||
T Consensus 22 ~~De~~~~~~~~tn~qs~e~y~~~nlKklEnk~~sg--d~N~~~~lRVlGGKGGFGS~LRA~g--~~~NestN~~~cRDL 97 (322)
T KOG2827|consen 22 NADERLQEWKDGTNGQSLEKYALENLKKLENKVKSG--DGNGATQLRVLGGKGGFGSCLRAVG--LALNESTNNGKCRDL 97 (322)
T ss_pred ccHHHHHHHHhcccCCCcchhHHhhhHhhcCccccc--cccceEEEEeccCCcchHHHHHHHH--HHHhhhhhhhhHhhh
Confidence 456777778877888888888888999887644321 2348889999999999999999999 667889999999999
Q ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012310 113 SGRRLRHVNAEKKLEEWKAEEEERRLEKIAEEFLKKAAKK---GKKGVGDGEAEKYVKKYRDESAVCMAKVEEAVRRACA 189 (466)
Q Consensus 113 ~GRRlr~Vn~ek~l~e~~~~~~~R~~Ek~~e~~~kk~~k~---~k~~~~~~~~~~~~e~~~e~~e~~~~~V~eav~~a~~ 189 (466)
+||||++|+++|+|+.|++++..+..+. .+..|.+..| +-.+.++|.+..|.+++++.++++.++++.++....
T Consensus 98 ~GrRla~i~eeKrLk~wLeKqa~eere~--kE~kK~KlEKllA~p~~kHdFdD~~Yls~re~~~ekvnDAfe~g~~l~~- 174 (322)
T KOG2827|consen 98 IGRRLAEIEEEKRLKIWLEKQAVEERES--KESKKEKLEKLLALPNGKHDFDDSGYLSDRESGSEKVNDAFEHGSFLVV- 174 (322)
T ss_pred cccchhhhHHHHHHHHHHHhcchhhhhh--HHHHHHHHHHHcccCCccccccchhHHHHHHHhhHHHHHHHHhHHHHHH-
Confidence 9999999999999999999988776553 2222222322 112234777788888888777664444444433332
Q ss_pred cCcccccccchHHHhhhhhhccCCCCCCCCCCCCCCCCchhhhhhhhhccCCCCCCCCcccCCCCCcccCCCCCccCCCC
Q 012310 190 DGKRKAVKSNEMEAKRMKIWMGKRKLGESDDEDSSEDDDDEENEKSIVLNNGHHSDTNKETEGSSGSVTGGKQDRVLSGG 269 (466)
Q Consensus 190 ~gKrk~~~~~~~~~kk~~~w~g~~~~~~~d~~~~~~~dd~~~~~~s~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~s~~ 269 (466)
.+|++..... +==++. |-+ .++|-+.++-+ ..+|.-.... +.||+
T Consensus 175 e~k~~gv~~~--------~~en~n-----d~d----e~vdv~aan~~--~~~ndw~~r~----------------~~Ss~ 219 (322)
T KOG2827|consen 175 EEKITGVQGI--------IEENMN-----DLD----ESVDVDAANTV--ADENDWLERV----------------EKSSG 219 (322)
T ss_pred hhhhccchhh--------hcccCC-----CCC----cchhhhhhhcc--chhhhhhhhh----------------hhccc
Confidence 1333332200 000000 000 01111111100 0010000000 00000
Q ss_pred CCCCCCChhhhhhhhhccCCCCCccccccCCCcccccccccccccccccccccchhhhhhHHhhhhhcccCCCcccchhh
Q 012310 270 GSCESGSEEEKDILVQQSSESGAEDVSREENDMVEPEIHVGMVMQTTSTSCLDTALVSETKAAQAEKHDCCGEFASESVE 349 (466)
Q Consensus 270 ~s~~s~s~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 349 (466)
-+-.-.|+++ ...+.+ .+.- ...|+..
T Consensus 220 Dag~~dse~e-------~~ts~~---------~~~n------~~~g~~~------------------------------- 246 (322)
T KOG2827|consen 220 DAGKNDSEVE-------CETSIT---------SAAN------KREGTAK------------------------------- 246 (322)
T ss_pred cccccccccc-------chhhhh---------hhhc------ccccchh-------------------------------
Confidence 0000000000 000000 0000 0000000
Q ss_pred hhcCCCCCCCCCCCcccccccccccCCCCCCCCCCcccccccccccCccccccCCCcccccCCChHHHhhhchhhhhHHH
Q 012310 350 EIIGQPPIPNVLNSENEESSEKRSVDAEPSGSSDSKSAINDGAIVANTTLAELERPLNFDEFNSAAEMEVLGLERLKSEL 429 (466)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ele~lg~~~lk~~l 429 (466)
|.+..-.++|.+.+||+|++|+|+++||.|||+|||++|
T Consensus 247 -----------------------------------------e~v~vd~~~~~~~~p~~~ddf~s~~d~e~lg~e~lk~~l 285 (322)
T KOG2827|consen 247 -----------------------------------------ETVSVDAVCCKPVEPLNFDDFNSPADMEVLGMERLKTEL 285 (322)
T ss_pred -----------------------------------------heeeeeeeccccCCCccccccCCHHHHHHhhHHHHHHHH
Confidence 011112247778899999999999999999999999999
Q ss_pred HhcccccCCchhhhhhhhhhcCCCCCCCCchhhhccC
Q 012310 430 QARGLKCGGTLQERAARLFLLKSTPVEKLPKKLLAKK 466 (466)
Q Consensus 430 ~~~glkcgGtl~era~Rlf~~k~~~~~~~~~~l~ak~ 466 (466)
+.+||||||||.|||+|||++|++|++++||+||+++
T Consensus 286 ~~rglkcgg~l~eraarl~~~k~~~~~~~pk~~l~~~ 322 (322)
T KOG2827|consen 286 QSRGLKCGGTLRERAARLFLLKSTPLDKLPKKLLAKK 322 (322)
T ss_pred HhcCCcccccHHHHHhhhhhhcCCChhhhhHhhccCC
Confidence 9999999999999999999999999999999999985
No 2
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=99.98 E-value=1.7e-32 Score=252.83 Aligned_cols=128 Identities=44% Similarity=0.672 Sum_probs=107.1
Q ss_pred EEEEEEeCCCC----EEEEEecCCCCCHHHHHHHHHHhhCCCCCC-eEEEe-cCeecCC--CCcccc----C----CCce
Q 012310 11 LQLFVKLLNGK----TTTLNFTTCHVYGHEIKNRIYEATKIPTHL-QRLIY-SGLQLKD--RTVISD----D----HITF 74 (466)
Q Consensus 11 MqIfVKtldGk----T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~-QRLIf-nGK~L~D--sstLss----~----gsTL 74 (466)
|||||++|+|. ++++.++ +++||.+|+.+|...+++|... ++|.+ .|+.|.. +..++. . ..+|
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp-~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l 79 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLP-STTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITL 79 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCC-CCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEE
Confidence 79999999994 5666665 4789999999999999999988 45655 3555532 222222 1 1378
Q ss_pred eEEeeecCCCcccCcchhhhhhhhccccccCcccccccCCCcccccchHHHHHHHHHHHHHHHHH
Q 012310 75 NLVLRLLGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKKLEEWKAEEEERRLE 139 (466)
Q Consensus 75 ~LvlRL~GGKGGFGS~LRa~g~r~~~kKt~n~daCRdL~GRRlr~Vn~ek~l~e~~~~~~~R~~E 139 (466)
+|.+||+||||||||||||+|+||+++||+|+|+||||+||||||||++|+|++|++++.+|+.+
T Consensus 80 ~l~~rl~GGKGGFGs~Lr~~g~~~s~~k~~n~dscRdL~GRRlr~v~~~k~l~~~~~~~~er~k~ 144 (162)
T PF13019_consen 80 RLSLRLRGGKGGFGSQLRAAGGRMSSKKTTNFDSCRDLSGRRLRTVNEEKKLAEWLEKKPEREKK 144 (162)
T ss_pred EEEEeccCCCccHHHHHHHHHHHhhcccCCCcccccCCCCcChhhhHHHHHHHHHHhcChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888643
No 3
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=99.92 E-value=3.1e-26 Score=178.93 Aligned_cols=60 Identities=67% Similarity=1.015 Sum_probs=59.2
Q ss_pred cccccCCChHHHhhhchhhhhHHHHhcccccCCchhhhhhhhhhcCCCCCCCCchhhhcc
Q 012310 406 LNFDEFNSAAEMEVLGLERLKSELQARGLKCGGTLQERAARLFLLKSTPVEKLPKKLLAK 465 (466)
Q Consensus 406 ~~~~~~~s~~ele~lg~~~lk~~l~~~glkcgGtl~era~Rlf~~k~~~~~~~~~~l~ak 465 (466)
|||+.|+|++|||.|||||||++|+++||||||||+|||+|||++||+++++||++||||
T Consensus 1 ldL~~f~sa~eLe~lGldrLK~~L~a~GLKcGGTl~ERA~RLfs~kg~~~~~~d~~l~AK 60 (60)
T PF13297_consen 1 LDLDAFSSAEELEALGLDRLKSALMALGLKCGGTLQERAARLFSVKGLPLEEIDKKLFAK 60 (60)
T ss_pred CcchhcCCHHHHHHhCHHHHHHHHHHcCCccCCCHHHHHHHHHHhcCCChhhCCHHHhcC
Confidence 799999999999999999999999999999999999999999999999999999999997
No 4
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=8.8e-18 Score=145.53 Aligned_cols=99 Identities=37% Similarity=0.484 Sum_probs=91.2
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCC----CceeEEeeecCCCcc
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDH----ITFNLVLRLLGGKGG 86 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~g----sTL~LvlRL~GGKGG 86 (466)
|+|||++|.|+|++|.+. |++||..||..|+...|||+++|+|+|+|++|+|+.++++|+ +|||+++||+|| .
T Consensus 1 ~~~~~~~~~GKT~~le~E-pS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG--~ 77 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVE-PSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG--I 77 (128)
T ss_pred CcEEEEEeeCceEEEEec-ccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC--C
Confidence 689999999999999998 999999999999999999999999999999999999999985 699999999999 7
Q ss_pred cCcchhhhhhhhccccccCcccccccCCCc
Q 012310 87 FGSLLRGAATKAGQKKTNNFDACRDMSGRR 116 (466)
Q Consensus 87 FGS~LRa~g~r~~~kKt~n~daCRdL~GRR 116 (466)
....|+++++++++ +.-.||.||.|-
T Consensus 78 i~~~~aalAmK~~~----D~lICRkCYAR~ 103 (128)
T KOG0003|consen 78 IEPSLAALAMKYNC----DKLICRKCYARL 103 (128)
T ss_pred CChhHHHHHHHhcc----chHHHHHHHHhc
Confidence 89999999988744 445999999874
No 5
>PTZ00044 ubiquitin; Provisional
Probab=99.53 E-value=2.7e-14 Score=115.09 Aligned_cols=72 Identities=36% Similarity=0.524 Sum_probs=68.2
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
|+|||++++|+++++.+. ++.||.+||++|++..|||++.|+|+|+|++|.|+.+|++| +++|+|+++++||
T Consensus 1 m~i~vk~~~G~~~~l~v~-~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFE-PDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 799999999999999998 89999999999999999999999999999999999888876 5699999999987
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.53 E-value=2.4e-14 Score=115.78 Aligned_cols=70 Identities=31% Similarity=0.414 Sum_probs=65.7
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
||||||+ ++++++.|. |+.||.+||++|++..|||+++|+|+|+|++|.|+.+|++| ++||||++||+||
T Consensus 1 mqi~vk~--~~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA--QNTHTLEVT-GQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC--CCEEEEEEC-CcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 8999998 478999997 89999999999999999999999999999999999999887 4699999999997
No 7
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.48 E-value=1.1e-13 Score=119.79 Aligned_cols=74 Identities=28% Similarity=0.462 Sum_probs=70.3
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
..|+|||+++.|++++|.+. ++.||.+||++|++..|||++.|+|+|+|+.|.|+.+|++| +++|+|++|++||
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~-~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 26 DTMELFIETLTGTCFELRVS-PFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeC-CCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 47999999999999999997 89999999999999999999999999999999999999887 4799999999997
No 8
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.44 E-value=2.7e-13 Score=108.38 Aligned_cols=72 Identities=44% Similarity=0.627 Sum_probs=68.2
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
|+|+|++++|+++++.+. ++.||.+||++|++.+++|++.|+|+|+|+.|.|+.+|.+| +++|+|++|++||
T Consensus 1 m~i~v~~~~g~~~~~~v~-~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEEC-CcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 799999999999999998 89999999999999999999999999999999999888876 5699999999997
No 9
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.42 E-value=4e-13 Score=108.47 Aligned_cols=69 Identities=32% Similarity=0.465 Sum_probs=65.1
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeee
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRL 80 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL 80 (466)
|+|+|++++|++++|.+. ++.||.+||++|++..|||+++|+|+|+|++|.|+.+|++| +++|+|++|.
T Consensus 1 m~i~vk~~~G~~~~l~v~-~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVS-EKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 799999999999999997 89999999999999999999999999999999999999886 5699999885
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.42 E-value=3.8e-13 Score=108.75 Aligned_cols=70 Identities=17% Similarity=0.298 Sum_probs=66.3
Q ss_pred EEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 13 LFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 13 IfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
|||+++.|++++|.+. ++.||.+||++|++..|||+++|+|+|+|+.|.|+.+|++| +++|+|++|+.||
T Consensus 1 i~vk~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQ-LTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEEC-CcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 7999999999999997 89999999999999999999999999999999999999886 4699999999987
No 11
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.42 E-value=6e-13 Score=106.39 Aligned_cols=72 Identities=38% Similarity=0.509 Sum_probs=68.1
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
|+|+|++++|+++.+.+. ++.||.+||++|++..++|+..|+|+|+|+.|.|+.+|.+| +++|+|+++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIE-PTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEEC-CCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 799999999999999997 89999999999999999999999999999999999988876 5799999999987
No 12
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.33 E-value=2.6e-12 Score=105.83 Aligned_cols=69 Identities=25% Similarity=0.406 Sum_probs=63.8
Q ss_pred EEEEEEeCCCCE-EEEE-ecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeee
Q 012310 11 LQLFVKLLNGKT-TTLN-FTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRL 80 (466)
Q Consensus 11 MqIfVKtldGkT-~tL~-V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL 80 (466)
|+|||++++|++ +++. +. ++.||.+||++|++..|||+++|+|+|+|+.|.|+.+|++| +++|+|++|+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~-~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLS-RLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred CEEEEEcCCCCEEEEeeccC-CcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999997 6885 66 89999999999999999999999999999999999999887 5799999986
No 13
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.32 E-value=5e-12 Score=103.74 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=68.0
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCC
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGK 84 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGK 84 (466)
.|+|+|+++.|++++++++ ++.||.+||.+|++..++|++.|+|+|+|+.|.|+ +|.+| +++|+|++.++||.
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~-~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVP-PDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEEC-CcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 4999999999999999997 89999999999999999999999999999999998 88886 57999999999883
No 14
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=5.3e-12 Score=116.04 Aligned_cols=73 Identities=44% Similarity=0.643 Sum_probs=69.4
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCC----CceeEEeeecCCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDH----ITFNLVLRLLGGK 84 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~g----sTL~LvlRL~GGK 84 (466)
|+|||+++.|++.++.+. +..||..+|.+|+..+|||+++|||||.|++|.|..+|++|+ +||+|++||+||-
T Consensus 1 m~ifVk~l~~kti~~eve-~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVE-ANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred Cccchhhccccceeeeec-ccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 799999999999999998 899999999999999999999999999999999999999984 6999999999884
No 15
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.22 E-value=2.1e-11 Score=97.27 Aligned_cols=66 Identities=20% Similarity=0.353 Sum_probs=61.8
Q ss_pred EEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEee
Q 012310 13 LFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLR 79 (466)
Q Consensus 13 IfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlR 79 (466)
|||+++.|+++++.+. |+.||.+||++|++..|+|+++|+|+|+|++|.|+.+|++| +++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVD-PDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEEC-CCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999998 89999999999999999999999999999999999999886 579999875
No 16
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.22 E-value=3.6e-11 Score=95.16 Aligned_cols=68 Identities=37% Similarity=0.495 Sum_probs=62.9
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEee
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLR 79 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlR 79 (466)
|+|+|++++|+++++.+. ++.||.+||++|++..|+|++.|+|+|+|+.|.|+.+|.+| +++|+|+.|
T Consensus 1 i~i~vk~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVE-EEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 789999999999999997 89999999999999999999999999999999999998876 568888765
No 17
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.21 E-value=7.2e-11 Score=98.78 Aligned_cols=76 Identities=14% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecC
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLG 82 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~G 82 (466)
.+..|+|+|++.+|+.+++.+. +++++..|+.+++++.|||+++|+|+|+|+.|.++.++.++ +++|++++++.|
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~-~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~G 86 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIK-RSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTG 86 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEc-CCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEeccc
Confidence 4678999999999999999997 89999999999999999999999999999999999888775 589999999999
Q ss_pred C
Q 012310 83 G 83 (466)
Q Consensus 83 G 83 (466)
|
T Consensus 87 G 87 (87)
T cd01763 87 G 87 (87)
T ss_pred C
Confidence 8
No 18
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.19 E-value=7.1e-11 Score=95.25 Aligned_cols=68 Identities=26% Similarity=0.334 Sum_probs=62.5
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCC--CCCCeEEEecCeecCCCCccccC----CCceeEEee
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKI--PTHLQRLIYSGLQLKDRTVISDD----HITFNLVLR 79 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GI--P~e~QRLIfnGK~L~DsstLss~----gsTL~LvlR 79 (466)
|+|+|++++|+++++.+. ++.||.+||++|++..|+ |++.|+|+|+|++|.|+.+|.+| +++|+++++
T Consensus 1 m~i~vk~~~g~~~~l~v~-~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 1 MKITFKTLKQQTFPIEVD-PDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence 899999999999999998 899999999999999999 99999999999999999888876 567877765
No 19
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.16 E-value=8.1e-11 Score=96.03 Aligned_cols=67 Identities=15% Similarity=0.052 Sum_probs=62.0
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEE
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLV 77 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~Lv 77 (466)
+|.|+|+++.|+.+.+.|+ |+.||.+||.+|++..++|++.|||+|+|+.|.|+.+|.+| +++|||.
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~-~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCN-PDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEEEEeC-CCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 5899999999999999997 89999999999999999999999999999999999998886 4688874
No 20
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.16 E-value=8e-11 Score=96.77 Aligned_cols=71 Identities=25% Similarity=0.287 Sum_probs=65.1
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEE--EecCeecCCCCccccC----CCceeEEeee
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRL--IYSGLQLKDRTVISDD----HITFNLVLRL 80 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRL--IfnGK~L~DsstLss~----gsTL~LvlRL 80 (466)
+.|+|+|+++.|+++++.+. ++.||.+||++|++..++|++.|+| +|+|+.|.|+.+|++| +++|+|+++-
T Consensus 1 ~~~~i~Vk~~~G~~~~~~v~-~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 1 MGWDLKVKMLGGNEFLVSLR-DSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred CceEEEEEeCCCCEEEEEcC-CCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 35999999999999999997 8999999999999999999999999 8999999999998886 5689999873
No 21
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.11 E-value=1.4e-10 Score=93.74 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=59.0
Q ss_pred EEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEe
Q 012310 14 FVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVL 78 (466)
Q Consensus 14 fVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~Lvl 78 (466)
.|+++.|+++++.+. |+.||.+||++|++..|||+++|+|+|+|++|.|+.+|.+| +++|||.+
T Consensus 2 ~vk~~~G~~~~l~v~-~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVS-SKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEEC-CcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 578999999999997 89999999999999999999999999999999999998876 46888875
No 22
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.11 E-value=1.4e-10 Score=94.41 Aligned_cols=66 Identities=27% Similarity=0.389 Sum_probs=61.3
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCC
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGK 84 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGK 84 (466)
++|++++|.+. ++.||.+||++|+...|||++.|+|+|+|+.|.|+.+|++| +++|+|+++++||+
T Consensus 5 l~g~~~~l~v~-~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQ-LSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEEC-CCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 57999999998 89999999999999999999999999999999999999876 56999999999875
No 23
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.10 E-value=2e-10 Score=91.99 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=61.0
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEee
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLR 79 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlR 79 (466)
|+|+|+++.|+. ++.+. ++.||.+||++|++..|||.++|+|+|+|+.|.|+.+|.+| +++|+|++|
T Consensus 1 ~~i~vk~~~g~~-~l~v~-~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDKE-EIEIA-EDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCCE-EEEEC-CCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 579999999974 89997 89999999999999999999999999999999999998886 568999875
No 24
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=99.09 E-value=3.4e-11 Score=125.63 Aligned_cols=64 Identities=52% Similarity=0.745 Sum_probs=61.0
Q ss_pred CCCcccccCCChHHHhhhchhhhhHHHHhcccccCCchhhhhhhhhhcCCCCCCCCchhhhccC
Q 012310 403 ERPLNFDEFNSAAEMEVLGLERLKSELQARGLKCGGTLQERAARLFLLKSTPVEKLPKKLLAKK 466 (466)
Q Consensus 403 ~~~~~~~~~~s~~ele~lg~~~lk~~l~~~glkcgGtl~era~Rlf~~k~~~~~~~~~~l~ak~ 466 (466)
...+||+.|+|+++|..+|++|||++|+++|+|||||+.+||.|||.++|.+++.++++||+|.
T Consensus 236 ~~~~dl~~~~s~Eel~~~g~erlk~al~alglk~gGt~~~ra~rlf~Tk~~~l~~L~~~~~~kn 299 (497)
T KOG2636|consen 236 AKALDLSGASSVEELYCLGCERLKSALTALGLKCGGTLHERAQRLFSTKSKSLSHLDTKLFAKN 299 (497)
T ss_pred ccccccchhhHHHHHHhhchhHHHHHHHHHHHhcCCeecHHHHhhhhhcCcchhhhhhhhhccC
Confidence 3349999999999999999999999999999999999999999999999999999999999974
No 25
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.00 E-value=1.1e-09 Score=86.35 Aligned_cols=64 Identities=41% Similarity=0.524 Sum_probs=59.1
Q ss_pred EeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeee
Q 012310 16 KLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRL 80 (466)
Q Consensus 16 KtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL 80 (466)
|+++|+++.+.+. ++.||.+||.+|+...++|++.|+|+|+|+.|.|+.+|.+| +++|+|++|.
T Consensus 1 k~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVD-PDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEE-TTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEEC-CCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 6889999999998 89999999999999999999999999999999999999886 5688888875
No 26
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=98.97 E-value=1.2e-09 Score=90.88 Aligned_cols=68 Identities=28% Similarity=0.243 Sum_probs=57.3
Q ss_pred cEEEEEEeCCCCE--EEEEecCCCCCHHHHHHHHHHhhC--CCCCCeEEEecCeecCCCCccccC------CCceeEEe
Q 012310 10 ALQLFVKLLNGKT--TTLNFTTCHVYGHEIKNRIYEATK--IPTHLQRLIYSGLQLKDRTVISDD------HITFNLVL 78 (466)
Q Consensus 10 ~MqIfVKtldGkT--~tL~V~sPs~TVsdLK~rI~e~~G--IP~e~QRLIfnGK~L~DsstLss~------gsTL~Lvl 78 (466)
+|.|+||+++|+. +.+.+. ++.||.+||.+|++..+ .|++.|||||+||.|.|+.+|.++ +.|+||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~-~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCF-LNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecC-CcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 4899999999998 555556 79999999999998874 557999999999999999888775 35888874
No 27
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=98.95 E-value=1.5e-09 Score=87.49 Aligned_cols=63 Identities=22% Similarity=0.203 Sum_probs=55.9
Q ss_pred EEEEeC-CCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC-CccccC----CCceeE
Q 012310 13 LFVKLL-NGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR-TVISDD----HITFNL 76 (466)
Q Consensus 13 IfVKtl-dGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds-stLss~----gsTL~L 76 (466)
|+|+++ .|++++|.++ ++.||.+||.+|++..|||+++|+|+|+|++|.|+ .+|.+| +++|+|
T Consensus 1 l~v~~~~~g~~~~l~v~-~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVD-PDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEEC-CcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 578999 9999999998 89999999999999999999999999999999887 567765 456655
No 28
>KOG2827 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=2.3e-10 Score=113.83 Aligned_cols=165 Identities=42% Similarity=0.570 Sum_probs=116.2
Q ss_pred ccccCcccccccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 012310 101 KKTNNFDACRDMSGRRLRHVNAEKKLEEWKAEEEERRLEKIAEEFLKKAAKKGKKGVGDGEAEKYVKKYRDESAVCMAKV 180 (466)
Q Consensus 101 kKt~n~daCRdL~GRRlr~Vn~ek~l~e~~~~~~~R~~Ek~~e~~~kk~~k~~k~~~~~~~~~~~~e~~~e~~e~~~~~V 180 (466)
+++++|++|||.++|+||||+....+..|...-.-+-.+.-+....|++.-+.+.+.++..-..|+--|....-.|.-+|
T Consensus 2 ~~~n~~~a~~d~Se~dlRHV~~De~~~~~~~~tn~qs~e~y~~~nlKklEnk~~sgd~N~~~~lRVlGGKGGFGS~LRA~ 81 (322)
T KOG2827|consen 2 KKTNNFDACRDMSERDLRHVNADERLQEWKDGTNGQSLEKYALENLKKLENKVKSGDGNGATQLRVLGGKGGFGSCLRAV 81 (322)
T ss_pred CccccccchhhhccccccccccHHHHHHHHhcccCCCcchhHHhhhHhhcCccccccccceEEEEeccCCcchHHHHHHH
Confidence 46889999999999999999999999999987655666666666666654333332222333455555555555566666
Q ss_pred HHHHHHHHhcCcccccc----cchHHHhhhhhhccCCCCCCCCCCCCCCCCchhhhhhhhhccCCCCCCCCcccCCCCCc
Q 012310 181 EEAVRRACADGKRKAVK----SNEMEAKRMKIWMGKRKLGESDDEDSSEDDDDEENEKSIVLNNGHHSDTNKETEGSSGS 256 (466)
Q Consensus 181 ~eav~~a~~~gKrk~~~----~~~~~~kk~~~w~g~~~~~~~d~~~~~~~dd~~~~~~s~~~~~g~~~~~~~~~~~~~~~ 256 (466)
-.++......++++... +.-...||+++|+++...++.++++ .+....+|.+++|+|
T Consensus 82 g~~~NestN~~~cRDL~GrRla~i~eeKrLk~wLeKqa~eere~kE----~kK~KlEKllA~p~~--------------- 142 (322)
T KOG2827|consen 82 GLALNESTNNGKCRDLIGRRLAEIEEEKRLKIWLEKQAVEERESKE----SKKEKLEKLLALPNG--------------- 142 (322)
T ss_pred HHHHhhhhhhhhHhhhcccchhhhHHHHHHHHHHHhcchhhhhhHH----HHHHHHHHHcccCCc---------------
Confidence 66666665555544433 2345779999999999999887775 356677899988875
Q ss_pred ccCCCCCccCCCCCC-CCCCChhhhhhhhhccC
Q 012310 257 VTGGKQDRVLSGGGS-CESGSEEEKDILVQQSS 288 (466)
Q Consensus 257 v~~~~~~~~~s~~~s-~~s~s~e~~~~~~~~~~ 288 (466)
+|+...++-.| |++++++..++.++++.
T Consensus 143 ----kHdFdD~~Yls~re~~~ekvnDAfe~g~~ 171 (322)
T KOG2827|consen 143 ----KHDFDDSGYLSDRESGSEKVNDAFEHGSF 171 (322)
T ss_pred ----cccccchhHHHHHHHhhHHHHHHHHhHHH
Confidence 44555566656 88999999999887643
No 29
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8.2e-10 Score=87.23 Aligned_cols=66 Identities=32% Similarity=0.435 Sum_probs=59.4
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEE
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLV 77 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~Lv 77 (466)
|-|.|+++.|+.+-+.+. |++.|..+|.+|++..|||+.+|||+|.|++++|+.+-..| +++|||+
T Consensus 1 m~iKvktLt~KeIeidIe-p~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIE-PTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeC-cchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 568999999999999998 99999999999999999999999999999999998776555 5677763
No 30
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=98.85 E-value=5.7e-09 Score=82.61 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=58.1
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEE
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLV 77 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~Lv 77 (466)
|+|+|++. |+++.+.++ ++.||.+||++|++.+|+|++.|+|+|+|+.|.++.+|.+| +++|+|+
T Consensus 1 i~i~vk~~-g~~~~i~v~-~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSIS-SQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEEC-CCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 68999986 999999997 89999999999999999999999999999999998888776 4567664
No 31
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.81 E-value=1e-08 Score=78.52 Aligned_cols=59 Identities=39% Similarity=0.490 Sum_probs=54.3
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDH 71 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~g 71 (466)
|+|+|++.+ .++.+.++ ++.||.+||.+|+..+++|++.|+|+|+|+.|.++.+|.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~-~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~ 59 (64)
T smart00213 1 IELTVKTLD-GTITLEVK-PSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYN 59 (64)
T ss_pred CEEEEEECC-ceEEEEEC-CCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcC
Confidence 789999998 78999997 889999999999999999999999999999999988887664
No 32
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=3.3e-08 Score=103.32 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=60.5
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhC---CCCCCeEEEecCeecCCCCccccCC----CceeEEe
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATK---IPTHLQRLIYSGLQLKDRTVISDDH----ITFNLVL 78 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~G---IP~e~QRLIfnGK~L~DsstLss~g----sTL~Lvl 78 (466)
|+|+||++.|++++|.|. ++.||.+||.+|+...| +|++.|+|+|+|++|.|+.+|.+|+ ++|.+++
T Consensus 1 MkItVKtl~g~~~~IeV~-~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv 74 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDME-PDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMV 74 (378)
T ss_pred CEEEEEeCCCCEEEEEeC-CcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEe
Confidence 899999999999999997 89999999999999998 9999999999999999999998874 4555544
No 33
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=98.60 E-value=9.5e-08 Score=78.02 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=52.5
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe---cCeecCCCCccccC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY---SGLQLKDRTVISDD 70 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf---nGK~L~DsstLss~ 70 (466)
|.|.|+ +.|+++.|+|+ ++.||.+||++|++.++||++.|+|+| .|+++.|+.+|+++
T Consensus 1 ~~i~vk-~~g~~~~v~v~-~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~ 61 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTL-SEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISAL 61 (74)
T ss_pred CEEEEE-ECCEEEEEEEC-CCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHc
Confidence 457777 47999999998 899999999999999999999999996 89999999988876
No 34
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.55 E-value=7.4e-08 Score=85.01 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=62.3
Q ss_pred CcEEEEEEeCCCCE-EEEEecCCCCCHHHHHHHHH-----HhhCCC--CCCeEEEecCeecCCCCccccCC---------
Q 012310 9 KALQLFVKLLNGKT-TTLNFTTCHVYGHEIKNRIY-----EATKIP--THLQRLIYSGLQLKDRTVISDDH--------- 71 (466)
Q Consensus 9 ~~MqIfVKtldGkT-~tL~V~sPs~TVsdLK~rI~-----e~~GIP--~e~QRLIfnGK~L~DsstLss~g--------- 71 (466)
..+.|.++..+|.- =...+. +++||.+||++|+ ...++| +++|+|||+|++|.|+.+|.+|+
T Consensus 3 ~~~e~kfrl~dg~digp~~~~-~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYP-AATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG 81 (113)
T ss_pred ccEEEEEEccCCCccCccccC-hhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence 36788899999963 466676 8999999999999 445566 99999999999999999998875
Q ss_pred -CceeEEeeecCCC
Q 012310 72 -ITFNLVLRLLGGK 84 (466)
Q Consensus 72 -sTL~LvlRL~GGK 84 (466)
.|+||++|...-+
T Consensus 82 ~~TmHvvlr~~~~~ 95 (113)
T cd01814 82 VITMHVVVQPPLAD 95 (113)
T ss_pred ceEEEEEecCCCCC
Confidence 5899999976544
No 35
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.38 E-value=8.9e-07 Score=72.68 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=50.4
Q ss_pred eCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecC-CCCccccC-----CCceeEEe
Q 012310 17 LLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLK-DRTVISDD-----HITFNLVL 78 (466)
Q Consensus 17 tldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~-DsstLss~-----gsTL~Lvl 78 (466)
...|.++++.|. |+.||.+||.+|++.+|||+++|+| |+|+.|. |..+|.+| |++++|.+
T Consensus 9 ~~~~~t~~l~v~-~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSHTVTIWLTVR-PDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccCCCeEEEEEC-CCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 345788999997 8999999999999999999999999 9999986 55777765 46777653
No 36
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=98.30 E-value=6.3e-07 Score=74.07 Aligned_cols=48 Identities=23% Similarity=0.232 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHhh--CCC-CCCeEEEecCeecCCCCccccC----CCceeEEe
Q 012310 31 HVYGHEIKNRIYEAT--KIP-THLQRLIYSGLQLKDRTVISDD----HITFNLVL 78 (466)
Q Consensus 31 s~TVsdLK~rI~e~~--GIP-~e~QRLIfnGK~L~DsstLss~----gsTL~Lvl 78 (466)
+.||.+||++|++.. ++| +++|||||+|++|.|+.+|++| +++|||+.
T Consensus 20 ~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 20 GYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 889999999999995 575 8999999999999999999987 47888874
No 37
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.29 E-value=2.2e-06 Score=68.26 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=59.4
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCC-CCeEEEecCeecCCCCccccC----CCceeEEe
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPT-HLQRLIYSGLQLKDRTVISDD----HITFNLVL 78 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~-e~QRLIfnGK~L~DsstLss~----gsTL~Lvl 78 (466)
|+|+|++.+|+.+.+.+. +++++..|++.++++.++|. ..++|+|+|+.|.++.++.++ +++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~-~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVK-PTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEE-TTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 789999999999999998 89999999999999999999 999999999999999888764 56777653
No 38
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.27 E-value=2.8e-06 Score=65.75 Aligned_cols=62 Identities=40% Similarity=0.495 Sum_probs=53.6
Q ss_pred EEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEE
Q 012310 15 VKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLV 77 (466)
Q Consensus 15 VKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~Lv 77 (466)
|+..+|+++.+.+. ++.||.+||.+|....++|+..|+|+|+|+.|.++.+|.++ +++|++.
T Consensus 2 v~~~~~~~~~~~~~-~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFELEVS-PDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred eEccCCCEEEEEEC-CCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence 67778999999997 79999999999999999999999999999999988888764 3455543
No 39
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.19 E-value=2.6e-06 Score=90.89 Aligned_cols=71 Identities=23% Similarity=0.251 Sum_probs=63.7
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeec
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLL 81 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~ 81 (466)
+.|.|.||+.+. ...+.|. .+.||.+||..|.+.+.+|+++++|||.||+|.|..+|.+| +.|||||++..
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~-~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVA-SDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred ceeEEEEecCCc-ceeEecc-cchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 458999999988 6788886 68999999999999999999999999999999999999887 45999999764
No 40
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.18 E-value=9.7e-06 Score=61.88 Aligned_cols=70 Identities=40% Similarity=0.547 Sum_probs=62.1
Q ss_pred EEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecC
Q 012310 12 QLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLG 82 (466)
Q Consensus 12 qIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~G 82 (466)
+++|.++.|+++.+.+. +..+|..+|.+|....++|...|+|.+.|+.|.|+.++.+| ..+++|..++.+
T Consensus 1 ~~~~~~~~gk~~~~~~~-~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~ 74 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVS-PSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG 74 (75)
T ss_pred CEEEEecCCCEEEEEec-CCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence 36888899999999997 89999999999999999999999999999999999888876 457888887753
No 41
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.07 E-value=6.5e-06 Score=71.52 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=49.9
Q ss_pred EEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCC-CCccccC----CCceeEEeeec
Q 012310 23 TTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKD-RTVISDD----HITFNLVLRLL 81 (466)
Q Consensus 23 ~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~D-sstLss~----gsTL~LvlRL~ 81 (466)
.+|.|. |.+||.+||.+|.+.++||+..|+|+++|+.|.| +.+|++| +++|.|.+..+
T Consensus 17 ~~L~V~-~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 17 KALLVS-ANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred ceEEeC-ccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 567786 8999999999999999999999999999999977 4788886 56888887543
No 42
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.07 E-value=5.6e-06 Score=84.66 Aligned_cols=60 Identities=33% Similarity=0.419 Sum_probs=57.0
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhC--CCCCCeEEEecCeecCCCCccccCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATK--IPTHLQRLIYSGLQLKDRTVISDDH 71 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~G--IP~e~QRLIfnGK~L~DsstLss~g 71 (466)
|+|+||+|.|+++++.+. |..||.+||..|+...| +|..+|.|||+|+.|.|+.++..|.
T Consensus 1 m~lt~KtL~q~~F~iev~-Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eyk 62 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVK-PEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYK 62 (340)
T ss_pred CeeEeeeccCceeEeecC-cchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhc
Confidence 789999999999999997 99999999999999998 9999999999999999999988863
No 43
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=4.6e-05 Score=87.06 Aligned_cols=70 Identities=30% Similarity=0.408 Sum_probs=63.4
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC---CCceeEEeeec
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD---HITFNLVLRLL 81 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~---gsTL~LvlRL~ 81 (466)
.+|+|||||-+++++.+. ...||.+||+.|....+|+.+.|||||.||.|.|+..+..| |-+|||+=|-+
T Consensus 3 ~~v~vktld~r~~t~~ig-~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~vdgk~~hlverpp 75 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRTFIIG-AQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNVDGKVIHLVERPP 75 (1143)
T ss_pred cceeeeecccceeEEEec-hHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccCCCeEEEeeccCC
Confidence 459999999999999997 68899999999999999999999999999999999888877 44999998743
No 44
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.54 E-value=0.00041 Score=61.34 Aligned_cols=73 Identities=27% Similarity=0.371 Sum_probs=54.5
Q ss_pred cEEEEEEeCCCC-EEEEEecCCCCCHHHHHHHHHHhh-------CCCCCCeEEEecCeecCCCCccccC----C------
Q 012310 10 ALQLFVKLLNGK-TTTLNFTTCHVYGHEIKNRIYEAT-------KIPTHLQRLIYSGLQLKDRTVISDD----H------ 71 (466)
Q Consensus 10 ~MqIfVKtldGk-T~tL~V~sPs~TVsdLK~rI~e~~-------GIP~e~QRLIfnGK~L~DsstLss~----g------ 71 (466)
.+.|.++..+|. +..+.|+ +++||.+||++|...- ...+.+.||||.||.|+|+.+|.++ +
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~-~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFD-PSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE--TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred eEEEEEEEeCCCcccccccC-ccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence 477888888999 8999997 8999999999998642 1123578999999999999998874 2
Q ss_pred CceeEEeeecCC
Q 012310 72 ITFNLVLRLLGG 83 (466)
Q Consensus 72 sTL~LvlRL~GG 83 (466)
.++||++|...-
T Consensus 81 ~vmHlvvrp~~~ 92 (111)
T PF13881_consen 81 TVMHLVVRPNAP 92 (111)
T ss_dssp EEEEEEE-SSSS
T ss_pred EEEEEEecCCCC
Confidence 378999986533
No 45
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=97.50 E-value=0.00054 Score=57.24 Aligned_cols=66 Identities=12% Similarity=0.209 Sum_probs=50.0
Q ss_pred EEEEEEeC-CCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEE-ecCe-----ec-CCCCccccC----CCceeEE
Q 012310 11 LQLFVKLL-NGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLI-YSGL-----QL-KDRTVISDD----HITFNLV 77 (466)
Q Consensus 11 MqIfVKtl-dGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLI-fnGK-----~L-~DsstLss~----gsTL~Lv 77 (466)
+.|+|.+. .......+++ +..||.+||.+|...+|+|+..|+|. |.|+ .| .|..+|..| +.+||++
T Consensus 2 v~v~i~~~~~~~~~ekr~~-~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 2 VTVNITSSADSFSFEKKYS-RGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEEeCCCceeeeEecC-CCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 56777764 3344566687 79999999999999999999999995 7777 35 456778776 4577765
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.01 E-value=0.0029 Score=45.03 Aligned_cols=62 Identities=31% Similarity=0.399 Sum_probs=49.2
Q ss_pred EEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc----CCCceeEE
Q 012310 15 VKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD----DHITFNLV 77 (466)
Q Consensus 15 VKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss----~gsTL~Lv 77 (466)
|+..+|....+.+. +..|+.+|+..|....++++..+.|+++|..+.+...+.. .+++|++.
T Consensus 2 v~~~~~~~~~~~~~-~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 2 VKLNDGKTVELLVP-SGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred eEecCCCEEEEEcC-CCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 34447888899987 7899999999999999999999999999999887654322 34555554
No 47
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=96.99 E-value=0.0023 Score=57.02 Aligned_cols=60 Identities=22% Similarity=0.174 Sum_probs=48.5
Q ss_pred EEEEEEeCCCC-EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCC
Q 012310 11 LQLFVKLLNGK-TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDH 71 (466)
Q Consensus 11 MqIfVKtldGk-T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~g 71 (466)
|.+|+..-..+ ++.+.+. ++.||-+||.+|+.....|+..|+|+-.+..|.|+.+|++++
T Consensus 1 MdvFlmIrR~KTTiF~dak-es~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g 61 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAK-ESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCG 61 (119)
T ss_pred CceEEEEEecceEEEeecC-CcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcC
Confidence 34555544445 4666665 899999999999999999999999998888899999998753
No 48
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=96.97 E-value=0.0034 Score=52.29 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=45.9
Q ss_pred EEEEEEeCCC--CEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEec----Cee---c-CCCCccccCC
Q 012310 11 LQLFVKLLNG--KTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYS----GLQ---L-KDRTVISDDH 71 (466)
Q Consensus 11 MqIfVKtldG--kT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfn----GK~---L-~DsstLss~g 71 (466)
++|+|.+..- .....+++ ++.||.+||.+|...+|+|+..|+|.+- +.. + .|..+|..|+
T Consensus 2 v~l~It~~~~~~~~~ekr~~-~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~ 71 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFP-KSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYG 71 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEE-TTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT
T ss_pred EEEEEEeCCCCCeeEEEEcC-CCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCC
Confidence 6788887655 47888998 7999999999999999999999999863 222 2 3356776653
No 49
>PLN02560 enoyl-CoA reductase
Probab=96.92 E-value=0.0027 Score=65.19 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=50.0
Q ss_pred EEEEEEeCCCCEE---EEEecCCCCCHHHHHHHHHHhhCC-CCCCeEEEec---C----eecCCCCccccC
Q 012310 11 LQLFVKLLNGKTT---TLNFTTCHVYGHEIKNRIYEATKI-PTHLQRLIYS---G----LQLKDRTVISDD 70 (466)
Q Consensus 11 MqIfVKtldGkT~---tL~V~sPs~TVsdLK~rI~e~~GI-P~e~QRLIfn---G----K~L~DsstLss~ 70 (466)
|+|.|++.+|+.+ +|+++ ++.||.+||.+|++..++ +++.|||++. | ..|.|+.+|.++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~-~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~ 70 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVP-DSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDY 70 (308)
T ss_pred CEEEEEcCCCCeecceeEEcC-CCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhc
Confidence 6889998889886 78997 899999999999999886 8999999972 3 377888787775
No 50
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.019 Score=50.03 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=62.8
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc----CCCceeEEeeecCCC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD----DHITFNLVLRLLGGK 84 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss----~gsTL~LvlRL~GGK 84 (466)
..+++-|+.-+|.+..+.+. -++.+.-|+...+++.|++...+|++|+|+.|....+-.+ .++.|.++....||-
T Consensus 19 ~hi~LKV~gqd~~~~~Fkik-r~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIK-RHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred ceEEEEEecCCCCEEEEEee-cCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 55777777767778888886 6889999999999999999999999999999998876544 467888888887774
No 51
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=96.04 E-value=0.013 Score=48.94 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=30.6
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY 56 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf 56 (466)
.|-|-|++.+|.- -|.++ |++|+.+|+++|.+.+++|...|.|..
T Consensus 4 ~milRvrS~dG~~-Rie~~-~~~t~~~L~~kI~~~l~~~~~~~~L~~ 48 (80)
T PF11543_consen 4 SMILRVRSKDGMK-RIEVS-PSSTLSDLKEKISEQLSIPDSSQSLSK 48 (80)
T ss_dssp --EEEEE-SSEEE-EEEE--TTSBHHHHHHHHHHHS---TTT---BS
T ss_pred cEEEEEECCCCCE-EEEcC-CcccHHHHHHHHHHHcCCCCcceEEEe
Confidence 7889999999864 45776 899999999999999999999888865
No 52
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=95.85 E-value=0.032 Score=46.52 Aligned_cols=68 Identities=25% Similarity=0.223 Sum_probs=54.1
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe---cC-ee-cCCCCccccCCCceeEEeee
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY---SG-LQ-LKDRTVISDDHITFNLVLRL 80 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf---nG-K~-L~DsstLss~gsTL~LvlRL 80 (466)
+||.|+-..+...++.|. |..+|..||.+|....+++- .|||.| +| ++ |.+..+|+.|+.-..+.++|
T Consensus 1 iqVtV~q~g~~dl~l~vn-Py~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~l 73 (80)
T cd01811 1 IQVTVEQTGYSDWILRVN-PYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICL 73 (80)
T ss_pred CEEEeeecCCCceEEEeC-CcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEE
Confidence 589999887778999998 99999999999999999987 899998 23 33 56668888887644444444
No 53
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.014 Score=60.07 Aligned_cols=58 Identities=16% Similarity=0.377 Sum_probs=47.3
Q ss_pred EEEEEEeC-CCCE--EEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc
Q 012310 11 LQLFVKLL-NGKT--TTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD 69 (466)
Q Consensus 11 MqIfVKtl-dGkT--~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss 69 (466)
|.|||+.- .|.+ ++|.|. .+.+|.+||..++.++|||+++.++||.|+.|.++.++.+
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~-~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~ 61 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVD-SDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQN 61 (446)
T ss_pred CeEEEEeCCccccCceeEEEe-cCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeec
Confidence 56788753 2333 566666 4778999999999999999999999999999999877664
No 54
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=95.61 E-value=0.03 Score=45.68 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=37.4
Q ss_pred EEecCCCCCHHHHHHHHHHhhC-CCCCCeEEE--ecCeecCCCCccccC
Q 012310 25 LNFTTCHVYGHEIKNRIYEATK-IPTHLQRLI--YSGLQLKDRTVISDD 70 (466)
Q Consensus 25 L~V~sPs~TVsdLK~rI~e~~G-IP~e~QRLI--fnGK~L~DsstLss~ 70 (466)
+.+..++.||.+||..|+...+ +|++.|||. +.|+.|.++.+|.++
T Consensus 16 ~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~ 64 (77)
T cd01801 16 LKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDL 64 (77)
T ss_pred cccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhc
Confidence 4444468999999999998865 588999885 789999988888776
No 55
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.58 E-value=0.03 Score=48.55 Aligned_cols=56 Identities=25% Similarity=0.259 Sum_probs=40.8
Q ss_pred EEEEeCCCCE-EEEEecCC-CCCHHHHHHHHHHhhC--CCCCCeEEEecCeecCCCCccc
Q 012310 13 LFVKLLNGKT-TTLNFTTC-HVYGHEIKNRIYEATK--IPTHLQRLIYSGLQLKDRTVIS 68 (466)
Q Consensus 13 IfVKtldGkT-~tL~V~sP-s~TVsdLK~rI~e~~G--IP~e~QRLIfnGK~L~DsstLs 68 (466)
|.|++-++-. ..|++++| +.||..||++|.+..+ .....+||||+|+.|+|...|.
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~ 62 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLS 62 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhh
Confidence 5566555432 56766645 7899999999998873 2234678999999999987664
No 56
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=94.49 E-value=0.37 Score=39.30 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=49.5
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCC-eEEE--ecCeecCCC--Ccccc
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHL-QRLI--YSGLQLKDR--TVISD 69 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~-QRLI--fnGK~L~Ds--stLss 69 (466)
.....|-|+.++|..+...|. +++||.+|.+.|......+... +.|+ |-.+.|.+. .+|.+
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~-~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e 69 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFP-KSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEE 69 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEE-TTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCC
T ss_pred CCEEEEEEECCCCCEEEEEEC-CcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHH
Confidence 457899999999999999998 8999999999999887777765 7776 456777654 36655
No 57
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=93.62 E-value=0.22 Score=40.34 Aligned_cols=49 Identities=8% Similarity=-0.067 Sum_probs=36.6
Q ss_pred eCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCc
Q 012310 17 LLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTV 66 (466)
Q Consensus 17 tldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Dsst 66 (466)
..+++...+.+. |+.++.+|.+..++++++.++...|.|+++.|+.+.+
T Consensus 3 ~~~~rr~~vkvt-p~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp 51 (65)
T PF11470_consen 3 CYNFRRFKVKVT-PNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLP 51 (65)
T ss_dssp -TTS-EEEE----TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-B
T ss_pred ccCCcEEEEEEC-CCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccc
Confidence 467899999997 9999999999999999999999999999999966543
No 58
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=90.09 E-value=1.9 Score=34.80 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=46.1
Q ss_pred cEEEEEEeCCCC--EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCCCceeEEeeecCC
Q 012310 10 ALQLFVKLLNGK--TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 10 ~MqIfVKtldGk--T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GG 83 (466)
+|.|+| +|+ ...+.++ +..|+.+|.+.+ +++.....+..||..+..+..| ..++.+.+.....||
T Consensus 4 mm~v~v---ng~~~~~~~~~~-~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~~~~l-~~gD~Veii~~V~GG 70 (70)
T PRK08364 4 MIRVKV---IGRGIEKEIEWR-KGMKVADILRAV----GFNTESAIAKVNGKVALEDDPV-KDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEE---eccccceEEEcC-CCCcHHHHHHHc----CCCCccEEEEECCEECCCCcCc-CCCCEEEEEccccCC
Confidence 355655 355 5667776 567899988765 6777777777899999766655 457788777777665
No 59
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=89.81 E-value=1.5 Score=35.13 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=41.2
Q ss_pred EEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCC-eEEEe----cC--eecCCCCcccc
Q 012310 15 VKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHL-QRLIY----SG--LQLKDRTVISD 69 (466)
Q Consensus 15 VKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~-QRLIf----nG--K~L~DsstLss 69 (466)
|+.+||...++.++ +++|+.+|.+.|++..+|.... +-|.+ +| ..|..+..|..
T Consensus 1 V~llD~~~~~~~v~-~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~ 61 (80)
T PF09379_consen 1 VRLLDGTTKTFEVD-PKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKK 61 (80)
T ss_dssp EEESSEEEEEEEEE-TTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGG
T ss_pred CCCcCCCcEEEEEc-CCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHH
Confidence 67899999999998 8999999999999999998643 45766 22 33555655544
No 60
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=89.31 E-value=1.4 Score=36.11 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=49.2
Q ss_pred cEEEEEEeCC------C-CEEEEEecCCCCCHHHHHHHHHHhhC-CCC--CCeEEEecCeecCCCCccccCCCceeEEee
Q 012310 10 ALQLFVKLLN------G-KTTTLNFTTCHVYGHEIKNRIYEATK-IPT--HLQRLIYSGLQLKDRTVISDDHITFNLVLR 79 (466)
Q Consensus 10 ~MqIfVKtld------G-kT~tL~V~sPs~TVsdLK~rI~e~~G-IP~--e~QRLIfnGK~L~DsstLss~gsTL~LvlR 79 (466)
+|+|.|+.|. | ...++.++ ...|+.+|++.|..... +.. ....+..||+.+.++..| ..++.|.+.++
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~-~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l-~dgDeVai~Pp 78 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELP-AGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAAL-KDGDELAIIPP 78 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECC-CCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCc-CCCCEEEEeCC
Confidence 3778888753 4 35677776 57899999999976541 111 112356788887655555 45889989998
Q ss_pred ecCC
Q 012310 80 LLGG 83 (466)
Q Consensus 80 L~GG 83 (466)
..||
T Consensus 79 vsGG 82 (82)
T PLN02799 79 ISGG 82 (82)
T ss_pred CCCC
Confidence 8887
No 61
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=0.94 Score=39.28 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=53.1
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD 69 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss 69 (466)
++..|++.|.--+|..+.+.+. .+++...|....+.+.|-..+.+|++|+|+.|..+.+-.+
T Consensus 21 ~t~hinLkvv~qd~telfFkiK-ktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~d 82 (103)
T COG5227 21 ITKHINLKVVDQDGTELFFKIK-KTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGD 82 (103)
T ss_pred cccccceEEecCCCCEEEEEEe-ccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhh
Confidence 4556778887778888888887 6889999999999999999999999999999988877544
No 62
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=88.35 E-value=0.64 Score=40.69 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=42.3
Q ss_pred EEEEEeCCCCE-EEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe-cC-eecCCCCcccc
Q 012310 12 QLFVKLLNGKT-TTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY-SG-LQLKDRTVISD 69 (466)
Q Consensus 12 qIfVKtldGkT-~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf-nG-K~L~DsstLss 69 (466)
.+|++.-..++ +.+... ++.||-+||.++.-...-|++.|+|+. .- +.|.|+.+|++
T Consensus 2 ~~f~~VrR~kttif~da~-es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d 61 (110)
T KOG4495|consen 2 DVFLRVRRHKTTIFTDAK-ESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGD 61 (110)
T ss_pred ceeeeeeecceeEEeecC-ccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhh
Confidence 34555444554 455554 899999999999999999999999986 33 56677777754
No 63
>PRK06437 hypothetical protein; Provisional
Probab=88.33 E-value=2.7 Score=33.78 Aligned_cols=64 Identities=9% Similarity=0.143 Sum_probs=45.4
Q ss_pred EEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCCCceeEEeeecCC
Q 012310 14 FVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 14 fVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GG 83 (466)
+|+.-.++...+.++ ...|+.+|... +++++...-+..||..+..+..|. .++.|.++.-.-||
T Consensus 4 ~~~v~g~~~~~~~i~-~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~~~~~L~-dgD~Veiv~~V~GG 67 (67)
T PRK06437 4 MIRVKGHINKTIEID-HELTVNDIIKD----LGLDEEEYVVIVNGSPVLEDHNVK-KEDDVLILEVFSGG 67 (67)
T ss_pred eEEecCCcceEEEcC-CCCcHHHHHHH----cCCCCccEEEEECCEECCCceEcC-CCCEEEEEecccCC
Confidence 343334566778776 56789998765 578888888889999998666664 57778776655554
No 64
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=87.58 E-value=2.6 Score=34.53 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=43.3
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecCC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLKD 63 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~D 63 (466)
....|.||+++|..+...|. ++.||.+|.+.|....+.....+.|+. ..+.+.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~-~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~ 58 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFP-SSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTK 58 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeC-CCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCcc
Confidence 36789999999999999997 799999999999766666666777764 4566654
No 65
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=86.04 E-value=1.7 Score=47.27 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=50.4
Q ss_pred cEEEEEEeCCCCEEEEE-ecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcc----ccCCCceeEE
Q 012310 10 ALQLFVKLLNGKTTTLN-FTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVI----SDDHITFNLV 77 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~-V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstL----ss~gsTL~Lv 77 (466)
...|.|+- .|+...+. +. .+.|+..||++|...+|+||+.|+|++.|.++.|+-.+ .-++.+|+|+
T Consensus 3 ~~~v~VKW-~gk~y~v~~l~-~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMm 73 (473)
T KOG1872|consen 3 SDTVIVKW-GGKKYPVETLS-TDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMM 73 (473)
T ss_pred cceEeeee-cCccccceecc-CCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEee
Confidence 34577775 46766666 54 68899999999999999999999999999999887222 2256666554
No 66
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=85.32 E-value=4.1 Score=32.98 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=40.2
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecCC
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLKD 63 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~D 63 (466)
...|.|++++|..+...|. +++||.+|.+.|...... ...+.|+. -.+.+.+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~-~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~ 55 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFN-STHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTD 55 (77)
T ss_pred cEEEEEEcCCCCEEEEEeC-CCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCC
Confidence 4679999999999999997 799999999999876433 44566764 4565644
No 67
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=83.94 E-value=7.9 Score=35.80 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=36.8
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTH 50 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e 50 (466)
.++.|.|..++|.+..+.+. +++|+.+|...|+.+.||+..
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~-~~~t~~ev~~~v~~~~~l~~~ 42 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVD-SSTTAEELLETVCRKLGIRES 42 (207)
T ss_pred CcEEEEEEecCCCEEEEEEC-CCCCHHHHHHHHHHHhCCCcc
Confidence 46788899999999999997 789999999999999999764
No 68
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=83.85 E-value=0.74 Score=48.16 Aligned_cols=68 Identities=26% Similarity=0.289 Sum_probs=49.6
Q ss_pred CCCCCCCCCcEEEEEEeCCCCEEEEEecCC-CCCHHHHHHHHHHhhCC-C-CCCeEEEecCeecCCCCcccc
Q 012310 1 MEDQATSPKALQLFVKLLNGKTTTLNFTTC-HVYGHEIKNRIYEATKI-P-THLQRLIYSGLQLKDRTVISD 69 (466)
Q Consensus 1 M~~~~~s~~~MqIfVKtldGkT~tL~V~sP-s~TVsdLK~rI~e~~GI-P-~e~QRLIfnGK~L~DsstLss 69 (466)
|+++ -.+....+|||..+.+-.-|++.+. ..||.+||..++....- | ..+|||+|.|+.|.|...|.+
T Consensus 1 meq~-~~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d 71 (391)
T KOG4583|consen 1 MEQT-IFEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTD 71 (391)
T ss_pred CCcc-cCCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHH
Confidence 6663 2456788999998887655555433 67999999999876432 1 247999999999999766654
No 69
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=83.74 E-value=4.1 Score=32.59 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=42.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHhhCC----CCCCeEEEecCeecCCCCccccCCCceeEEeeecCC
Q 012310 23 TTLNFTTCHVYGHEIKNRIYEATKI----PTHLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 23 ~tL~V~sPs~TVsdLK~rI~e~~GI----P~e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GG 83 (466)
..+.++ ...||.+|.+.+....+- ......+..||+.+..+..| ..++.|.+.++..||
T Consensus 18 ~~~~~~-~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l-~~gD~v~i~ppv~GG 80 (80)
T cd00754 18 EELELP-EGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPL-KDGDEVAIIPPVSGG 80 (80)
T ss_pred EEEECC-CCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCccc-CCCCEEEEeCCCCCC
Confidence 556665 478999999999877532 22344566799998865554 457899999998887
No 70
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=83.43 E-value=5 Score=33.81 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=41.9
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecC--eecC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSG--LQLK 62 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnG--K~L~ 62 (466)
..+.|.|++++|..+.-.|. .+.||.+|.+.|... +..+..+.|+++= +.+.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~-~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~ 56 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFL-FTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLP 56 (85)
T ss_pred ceEEEEEECCCCCEEEEEeC-CCCcHHHHHHHHHhC-CCCCCcEEEecCCCCcccc
Confidence 46889999999999999997 789999999999754 4455778888654 6664
No 71
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=83.03 E-value=0.37 Score=49.72 Aligned_cols=62 Identities=15% Similarity=0.346 Sum_probs=0.0
Q ss_pred CCcEEEEEEeCCCCEEEEEecC--C--CCCHHHHHHHHHH----------hhCCCCCCeE-----EEecCeecCCCCccc
Q 012310 8 PKALQLFVKLLNGKTTTLNFTT--C--HVYGHEIKNRIYE----------ATKIPTHLQR-----LIYSGLQLKDRTVIS 68 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~s--P--s~TVsdLK~rI~e----------~~GIP~e~QR-----LIfnGK~L~DsstLs 68 (466)
+..|.|.+|++..-.+.+.+.. | +.||.+||..|++ ..+||.+..+ |.|+-+++.++.+|.
T Consensus 76 ~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~ 155 (309)
T PF12754_consen 76 SKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLA 155 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHH
Confidence 4567888888766555444432 2 6899999999999 8999999887 999999998877765
Q ss_pred c
Q 012310 69 D 69 (466)
Q Consensus 69 s 69 (466)
+
T Consensus 156 e 156 (309)
T PF12754_consen 156 E 156 (309)
T ss_dssp -
T ss_pred H
Confidence 4
No 72
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=82.92 E-value=5.3 Score=33.32 Aligned_cols=52 Identities=15% Similarity=0.083 Sum_probs=42.5
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLK 62 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~ 62 (466)
...+|.|++++|....-+|. .++++.+|.+.|... +.+...++|+. --+.+.
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~-~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~ 56 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFL-GDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLT 56 (80)
T ss_pred CeEEEEEECCCCCEEEEEeC-CCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCc
Confidence 36789999999999999997 799999999999874 67777888873 456553
No 73
>smart00455 RBD Raf-like Ras-binding domain.
Probab=81.87 E-value=7.5 Score=31.65 Aligned_cols=45 Identities=9% Similarity=0.019 Sum_probs=39.5
Q ss_pred EEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecC
Q 012310 13 LFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSG 58 (466)
Q Consensus 13 IfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnG 58 (466)
+.|-.++|+...+.+. |..|+.++...|+++.|+.++...|++.|
T Consensus 2 ~~v~LP~~~~~~V~vr-pg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVR-PGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEEC-CCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 3466789999999997 99999999999999999999888888744
No 74
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=81.50 E-value=7.3 Score=33.00 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=43.3
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLK 62 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~ 62 (466)
...-+|.|++++|....-.|. .+.++.+|...|.. .|.+...+.|+. --|.+.
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~-~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~ 57 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALP-EQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLS 57 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeC-CCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccC
Confidence 346789999999999999997 68999999999988 577888888884 345553
No 75
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=81.34 E-value=8.2 Score=32.00 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=43.1
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCC-CCCeEEE--ecCeecCCC-Cccc
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIP-THLQRLI--YSGLQLKDR-TVIS 68 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP-~e~QRLI--fnGK~L~Ds-stLs 68 (466)
...|.|+.++|+.+...|. .+.||.+|.+.|....+-+ ...+.|+ |-.+.|.+. .+|.
T Consensus 4 ~t~iqiRlpdG~r~~~rF~-~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~ 65 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFN-SSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLK 65 (79)
T ss_pred eeEEEEECCCCCEEEEEeC-CCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHH
Confidence 5789999999999999998 7999999999999765432 2345665 456666553 4443
No 76
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=81.26 E-value=4.2 Score=34.78 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=37.7
Q ss_pred EEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCC---CCeEEEe
Q 012310 12 QLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPT---HLQRLIY 56 (466)
Q Consensus 12 qIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~---e~QRLIf 56 (466)
.+.++.+.|+++-+.+. |+.++.+|+..|.+++|+.. ..+.|.|
T Consensus 2 ~FK~~~~~GrvhRf~~~-~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRVHRFRLR-PSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCEEEEEec-CCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 35678899999999997 89999999999999999987 4666766
No 77
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=80.25 E-value=4.7 Score=33.24 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=38.2
Q ss_pred EEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEec
Q 012310 13 LFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYS 57 (466)
Q Consensus 13 IfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfn 57 (466)
+.|-.++|+...+.+. |..||.++...++++.|+.++...|.+.
T Consensus 2 ~~V~LPng~~t~V~vr-pg~ti~d~L~~~c~kr~l~~~~~~v~~~ 45 (72)
T cd01760 2 CRVYLPNGQRTVVPVR-PGMSVRDVLAKACKKRGLNPECCDVFLL 45 (72)
T ss_pred EEEECcCCCeEEEEEC-CCCCHHHHHHHHHHHcCCCHHHEEEEEe
Confidence 4566889999999997 9999999999999999999987776653
No 78
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=79.21 E-value=6 Score=32.37 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=44.2
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCC------eEEE-ecCeecCCCCccccC----CCceeE
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHL------QRLI-YSGLQLKDRTVISDD----HITFNL 76 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~------QRLI-fnGK~L~DsstLss~----gsTL~L 76 (466)
.+.|.|...+|+..-+.++ ...+|.+|...|.+..+++... ..|. .+|..|.++.+|.++ |++|.|
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP-~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALP-ADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEE-TTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcC-CCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 3567777655688888887 5889999999999988875432 3455 579999999999885 456554
No 79
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=77.35 E-value=12 Score=30.39 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=43.8
Q ss_pred CC-EEEEEecCCCCCHHHHHHHHHHhhC-C-C-CCCeEEEecCeecCCCCccccCCCceeEEeeecCC
Q 012310 20 GK-TTTLNFTTCHVYGHEIKNRIYEATK-I-P-THLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 20 Gk-T~tL~V~sPs~TVsdLK~rI~e~~G-I-P-~e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GG 83 (466)
|. ...+.++....|+.+|++.|.++.+ + . ....++..|++.+.++..| ..++.|.+.++..||
T Consensus 14 g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l-~dgDevai~PpvsGG 80 (80)
T TIGR01682 14 GTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALL-NEGDEVAFIPPVSGG 80 (80)
T ss_pred CCCeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCc-CCCCEEEEeCCCCCC
Confidence 44 3467776223899999999988753 1 0 1223566799988875554 457899999999887
No 80
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=77.14 E-value=19 Score=29.25 Aligned_cols=51 Identities=12% Similarity=0.028 Sum_probs=37.9
Q ss_pred EEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecCCC
Q 012310 13 LFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLKDR 64 (466)
Q Consensus 13 IfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~Ds 64 (466)
+.|-.++|++..+.+. |..||.++...++++.++.++...+.. ..++|.-+
T Consensus 3 ~~v~LP~~q~t~V~vr-pg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~ 55 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVR-PGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWD 55 (71)
T ss_dssp EEEEETTTEEEEEEE--TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TT
T ss_pred EEEECCCCCEEEEEEc-CCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCC
Confidence 4566789999999997 899999999999999999998877664 33445433
No 81
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=75.97 E-value=12 Score=30.87 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=40.4
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecCC
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLKD 63 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~D 63 (466)
...|-|++++|..+...|. .+.|+.+|.+.|....+.+ ..+.|+. -.+.+.+
T Consensus 4 ~~~i~iRlp~G~~~~~~F~-~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~ 57 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFK-AREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTE 57 (79)
T ss_pred EEEEEEECCCCCEEEEEeC-CCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCc
Confidence 4678999999999999997 6899999999998765433 4466663 5666653
No 82
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=75.32 E-value=12 Score=30.16 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=36.4
Q ss_pred EEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEec
Q 012310 12 QLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYS 57 (466)
Q Consensus 12 qIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfn 57 (466)
.|.|+. .|.++.+.++ +..|..+|..+|.+.++++...+.|.|.
T Consensus 3 ~vK~~~-~~~~~~~~~~-~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 3 DVKLRY-GGETRRLSVP-RDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred cEEEEE-CCEEEEEEEC-CCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 445543 6789999997 6899999999999999998777888875
No 83
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=73.78 E-value=18 Score=28.08 Aligned_cols=57 Identities=12% Similarity=0.012 Sum_probs=37.7
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC---CccccCCCceeEEeeecCC
Q 012310 19 NGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR---TVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 19 dGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds---stLss~gsTL~LvlRL~GG 83 (466)
+|+... ++ +..|+.+|.+.+ +++ ....+..||..+... .+.-..++.|.++....||
T Consensus 6 Ng~~~~--~~-~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQTLS--LP-DGATVADALAAY----GAR-PPFAVAVNGDFVARTQHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCEEEE--CC-CCCcHHHHHHhh----CCC-CCeEEEECCEEcCchhcccccCCCCCEEEEEeeccCC
Confidence 566544 44 457899988765 343 335567899988643 3333568899888888776
No 84
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=70.92 E-value=16 Score=31.01 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=32.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecC
Q 012310 22 TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSG 58 (466)
Q Consensus 22 T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnG 58 (466)
++.++++ +..+..+|.++|.+++++|++...|.|.-
T Consensus 12 tIaIrvp-~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 12 TVAIQVA-RGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 8899997 78899999999999999999988898843
No 85
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=70.80 E-value=17 Score=28.57 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=41.6
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC----CccccCCCceeEEeeecCC
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR----TVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds----stLss~gsTL~LvlRL~GG 83 (466)
++|+...+ + ...|+.+|..++ +++.....+..||+.+..+ ..| ..++.|.+.....||
T Consensus 4 iNg~~~~~--~-~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~~~~~~~L-~~gD~V~ii~~v~GG 65 (65)
T cd00565 4 VNGEPREV--E-EGATLAELLEEL----GLDPRGVAVALNGEIVPRSEWASTPL-QDGDRIEIVTAVGGG 65 (65)
T ss_pred ECCeEEEc--C-CCCCHHHHHHHc----CCCCCcEEEEECCEEcCHHHcCceec-CCCCEEEEEEeccCC
Confidence 35665444 3 456899988764 5777778888999998765 333 458889888888776
No 86
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=67.11 E-value=18 Score=28.56 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=43.7
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhhCC--CCCCeEEEecCeecCC---CCccccCCCceeEEeeecCC
Q 012310 22 TTTLNFTTCHVYGHEIKNRIYEATKI--PTHLQRLIYSGLQLKD---RTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 22 T~tL~V~sPs~TVsdLK~rI~e~~GI--P~e~QRLIfnGK~L~D---sstLss~gsTL~LvlRL~GG 83 (466)
...+.+. ...||.+|...+....+- ......+..||+.+.+ +..| ..++.|.+++...||
T Consensus 13 ~~~~~~~-~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l-~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVP-EGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPL-KDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEES-STSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBE-ETTEEEEEEESTSTS
T ss_pred CeEEecC-CCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCc-CCCCEEEEECCCCCC
Confidence 4455565 588999999999876421 2255677789999988 4444 457889898888887
No 87
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=66.89 E-value=26 Score=27.47 Aligned_cols=58 Identities=10% Similarity=0.139 Sum_probs=39.4
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC---CccccCCCceeEEeeecCC
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR---TVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds---stLss~gsTL~LvlRL~GG 83 (466)
++|+.+.+ + + .|+.+|...+ +++.....+..|+..+..+ .+.-..++.|.++....||
T Consensus 5 ~Ng~~~~~--~-~-~tl~~Ll~~l----~~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 5 VNGETLQT--E-A-TTLALLLAEL----DYEGNWLATAVNGELVHKEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred ECCeEEEc--C-c-CcHHHHHHHc----CCCCCeEEEEECCEEcCHHHcCccccCCCCEEEEEEeccCC
Confidence 35776665 3 3 4888888764 6776556677899998752 3333568888888777776
No 88
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=63.34 E-value=30 Score=28.47 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=41.8
Q ss_pred CC-EEEEEecCCCCCHHHHHHHHHHhhCC------C-----CCCeEEEecCeecCCCC--ccccCCCceeEEeeecCC
Q 012310 20 GK-TTTLNFTTCHVYGHEIKNRIYEATKI------P-----THLQRLIYSGLQLKDRT--VISDDHITFNLVLRLLGG 83 (466)
Q Consensus 20 Gk-T~tL~V~sPs~TVsdLK~rI~e~~GI------P-----~e~QRLIfnGK~L~Dss--tLss~gsTL~LvlRL~GG 83 (466)
|. ...+.+ +..||.+|.+.|.++.+- . -....+..||+.+.... .| ..++.|.+.+++.||
T Consensus 14 g~~~~~v~~--~~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l-~dgdev~i~PpvsGG 88 (88)
T TIGR01687 14 GKKSEEIEI--EGKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTEL-KDGDVVAIFPPVSGG 88 (88)
T ss_pred CCceEEEEe--CCCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCC-CCCCEEEEeCCCcCC
Confidence 53 356655 378999999999877531 0 12244567998886554 33 458899999999887
No 89
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.90 E-value=3.2 Score=34.03 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=42.4
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD 70 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~ 70 (466)
++|.+.-.-|+..-+.+. |.+||.|+|..|+.++|-.++...|---+..+.+.-+|++|
T Consensus 2 iev~~nDrLGKKVRvKCn-~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dy 60 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCN-TDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDY 60 (73)
T ss_pred ceehhhhhcCceEEEEeC-CcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeE
Confidence 566666666888888887 89999999999999999877765554333344444455554
No 90
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=62.06 E-value=78 Score=28.51 Aligned_cols=39 Identities=8% Similarity=0.153 Sum_probs=31.9
Q ss_pred CcEEEEEEeCCCC--EEEEEecCCCCCHHHHHHHHHHhhCCC
Q 012310 9 KALQLFVKLLNGK--TTTLNFTTCHVYGHEIKNRIYEATKIP 48 (466)
Q Consensus 9 ~~MqIfVKtldGk--T~tL~V~sPs~TVsdLK~rI~e~~GIP 48 (466)
--|.+|+.--+++ +.||+|. .+.|+.+|.+.+.+++.+.
T Consensus 22 gvmrf~~qd~~~k~atK~VrVs-S~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 22 GVMRFYFQDGGEKVATKCIRVS-STATTRDVIDTLSEKFRPD 62 (112)
T ss_pred eEEEEEEEcCCCcEEEEEEEEe-cCCCHHHHHHHHHHHhccc
Confidence 3588888877766 6899997 5889999999999998843
No 91
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=62.02 E-value=55 Score=25.85 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=41.5
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCC---CCccccCCCceeEEeeecCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKD---RTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~D---sstLss~gsTL~LvlRL~GG 83 (466)
|+|+| +|+.+.+ + ...|+.+|... ++++.....+-.|+..+.. ..+.-..++.|.++....||
T Consensus 1 m~i~v---Ng~~~~~--~-~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 1 MQILF---NDQPMQC--A-AGQTVHELLEQ----LNQLQPGAALAINQQIIPREQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CEEEE---CCeEEEc--C-CCCCHHHHHHH----cCCCCCcEEEEECCEEeChHHcCccccCCCCEEEEEEEccCC
Confidence 45554 5776655 3 45689988865 4555556677789999863 23334567888787777766
No 92
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=61.45 E-value=27 Score=29.34 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=32.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCC-CCeEEEe
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPT-HLQRLIY 56 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~-e~QRLIf 56 (466)
+.|.++.+.++ |+.+..+|++.|..++++.. ..+.|.|
T Consensus 7 ~~~d~~r~~l~-~~~~~~~L~~~i~~r~~~~~~~~f~LkY 45 (82)
T cd06407 7 YGEEKIRFRLP-PSWGFTELKQEIAKRFKLDDMSAFDLKY 45 (82)
T ss_pred eCCeEEEEEcC-CCCCHHHHHHHHHHHhCCCCCCeeEEEE
Confidence 57888999997 78899999999999999875 5677777
No 93
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=59.24 E-value=48 Score=25.80 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=39.2
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCC----CCccccCCCceeEEeeecCC
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKD----RTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~D----sstLss~gsTL~LvlRL~GG 83 (466)
++|+...+ + ...|+.+|... ++++....-+..||..+.. +..| ..++.|.+..-.-||
T Consensus 5 vNG~~~~~--~-~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~~~~~~l-~~gD~vei~~~vgGG 66 (66)
T PRK05659 5 LNGEPREL--P-DGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQHASTAL-REGDVVEIVHALGGG 66 (66)
T ss_pred ECCeEEEc--C-CCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHHcCcccC-CCCCEEEEEEEecCC
Confidence 35775544 3 45688888764 5788887788899988763 3333 457888777666554
No 94
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=57.79 E-value=48 Score=27.16 Aligned_cols=59 Identities=7% Similarity=0.033 Sum_probs=38.0
Q ss_pred EEEecCCCCCHHHHHHHHHHhhC-----CCCCCeEEEecCeecCCCCccccCCCceeEEeeecCC
Q 012310 24 TLNFTTCHVYGHEIKNRIYEATK-----IPTHLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 24 tL~V~sPs~TVsdLK~rI~e~~G-----IP~e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GG 83 (466)
.+.++....||.+|++.|.++.. +-....++..|++....+..| ..++.|-+.++..||
T Consensus 18 ~~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l-~dgDeVai~PPVsGG 81 (81)
T PRK11130 18 ALELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPL-TDGDEVAFFPPVTGG 81 (81)
T ss_pred eEEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCC-CCCCEEEEeCCCCCC
Confidence 34444235799999999987752 111223444577665555444 458888899998887
No 95
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=55.50 E-value=84 Score=26.59 Aligned_cols=66 Identities=9% Similarity=0.100 Sum_probs=43.4
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC---CccccCCCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR---TVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds---stLss~gsTL~LvlRL~GG 83 (466)
...|+|.| +|+...+ + ...||.+|... ++++....-+-.||..+..+ .+.-..++.|.++--..||
T Consensus 16 ~~~m~I~V---NG~~~~~--~-~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 16 MVLITISI---NDQSIQV--D-ISSSLAQIIAQ----LSLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred CceEEEEE---CCeEEEc--C-CCCcHHHHHHH----cCCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEEEecCC
Confidence 34555554 5776555 3 45688888775 46887767778899998653 3333557888776666555
No 96
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=55.26 E-value=79 Score=25.81 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=41.0
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC---CccccCCCceeEEeeecCC
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR---TVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds---stLss~gsTL~LvlRL~GG 83 (466)
+|+|.+. |+... ++ ...|+.+|... ++++....-+..||..+..+ ......++.+.++--.-||
T Consensus 2 ~m~i~~n---g~~~e--~~-~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 2 PMTIQLN---GKEVE--IA-EGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred cEEEEEC---CEEEE--cC-CCCcHHHHHHH----hCCCCceEEEEECCEEccchhhhhccccCCCEEEEEEeecCC
Confidence 5666654 66544 44 34789998865 57888888888999999742 2222345666555444444
No 97
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=55.17 E-value=46 Score=26.71 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=34.6
Q ss_pred EEEEEEeCCCCEEE-EEecCCCCCHHHHHHHHHHhhCCCCCCeEEEec
Q 012310 11 LQLFVKLLNGKTTT-LNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYS 57 (466)
Q Consensus 11 MqIfVKtldGkT~t-L~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfn 57 (466)
+.|.+.. .|..+. +.+. +..+..+|..+|...++++...+.|.|.
T Consensus 2 ~~vK~~~-~~~~~~~~~~~-~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 2 VRVKVRY-GGDIRRIISLP-SDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEEEEE-TTEEEEEEEEC-STSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEEEEE-CCeeEEEEEcC-CCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 4555553 455555 8886 5779999999999999999788888883
No 98
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=55.11 E-value=67 Score=25.10 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=40.3
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC---CccccCCCceeEEeeecCC
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR---TVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds---stLss~gsTL~LvlRL~GG 83 (466)
++|+.+.+ + ...|+.+|... +++++....+..||..+..+ .+.-..++.|.++....||
T Consensus 3 iNg~~~~~--~-~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 3 VNGEPVEV--E-DGLTLAALLES----LGLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred ECCeEEEc--C-CCCcHHHHHHH----cCCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEEEeccCC
Confidence 46665554 3 35689988876 45777777778899998643 2333457888888877776
No 99
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=54.82 E-value=43 Score=26.69 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=32.8
Q ss_pred EEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe
Q 012310 13 LFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY 56 (466)
Q Consensus 13 IfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf 56 (466)
|.|+ +.|..+.+.++....|..+|+++|.+.++++...+.|.|
T Consensus 3 vK~~-~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y 45 (81)
T cd05992 3 VKVK-YGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKY 45 (81)
T ss_pred EEEE-ecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEe
Confidence 3444 346777887764588999999999999999876666666
No 100
>PRK07440 hypothetical protein; Provisional
Probab=53.04 E-value=91 Score=25.22 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=41.7
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCC----CCccccCCCceeEEeeecCC
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKD----RTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~D----sstLss~gsTL~LvlRL~GG 83 (466)
.|+|+| +|+.+.+ + ...||.+|... +++++...-+..||..+.. ...| ..++.|.++--..||
T Consensus 4 ~m~i~v---NG~~~~~--~-~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r~~w~~~~L-~~gD~IEIv~~v~GG 70 (70)
T PRK07440 4 PITLQV---NGETRTC--S-SGTSLPDLLQQ----LGFNPRLVAVEYNGEILHRQFWEQTQV-QPGDRLEIVTIVGGG 70 (70)
T ss_pred ceEEEE---CCEEEEc--C-CCCCHHHHHHH----cCCCCCeEEEEECCEEeCHHHcCceec-CCCCEEEEEEEecCC
Confidence 577765 4775444 3 45688888754 5677777778889999873 3333 457777666655554
No 101
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=52.17 E-value=50 Score=26.92 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=28.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhhCCC--CCCeEEE
Q 012310 20 GKTTTLNFTTCHVYGHEIKNRIYEATKIP--THLQRLI 55 (466)
Q Consensus 20 GkT~tL~V~sPs~TVsdLK~rI~e~~GIP--~e~QRLI 55 (466)
+...+|.|+ ..+|..+|...+.+++++. +..+.|+
T Consensus 12 ~~~kti~V~-~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVS-KDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEEC-CCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 667899997 7999999999999999998 3444444
No 102
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=51.59 E-value=60 Score=25.87 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=36.5
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCCCceeEE
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDHITFNLV 77 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~gsTL~Lv 77 (466)
|+|+| +|+...+. ..+|+.+|+.++.. +.-.+|+||-+..++..|.. ++.|.+.
T Consensus 1 M~I~v---N~k~~~~~---~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L~e-~D~v~~I 54 (57)
T PF14453_consen 1 MKIKV---NEKEIETE---ENTTLFELRKESKP------DADIVILNGFPTKEDIELKE-GDEVFLI 54 (57)
T ss_pred CEEEE---CCEEEEcC---CCcCHHHHHHhhCC------CCCEEEEcCcccCCccccCC-CCEEEEE
Confidence 56665 46654443 45789999988653 33468999999998888754 4444443
No 103
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=50.72 E-value=50 Score=27.80 Aligned_cols=52 Identities=13% Similarity=0.074 Sum_probs=37.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe-cCeecCCCCccccCCCceeEEe
Q 012310 21 KTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY-SGLQLKDRTVISDDHITFNLVL 78 (466)
Q Consensus 21 kT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf-nGK~L~DsstLss~gsTL~Lvl 78 (466)
..+.+.+. +..||.++.. .+|||.....+++ ||+...-+..+ ..|+.|.+.+
T Consensus 23 ~~~~~~~~-~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~~~~~-~~Gd~v~V~P 75 (81)
T PF14451_consen 23 GPFTHPFD-GGATVKDVIE----SLGVPHTEVGLILVNGRPVDFDYRL-KDGDRVAVYP 75 (81)
T ss_pred CceEEecC-CCCcHHHHHH----HcCCChHHeEEEEECCEECCCcccC-CCCCEEEEEe
Confidence 45667776 6778877754 4799998887665 99998877665 3466666554
No 104
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=50.34 E-value=45 Score=27.89 Aligned_cols=46 Identities=22% Similarity=0.160 Sum_probs=37.5
Q ss_pred EEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe-cC-eec
Q 012310 15 VKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY-SG-LQL 61 (466)
Q Consensus 15 VKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf-nG-K~L 61 (466)
|-.+||++..+.+. |..||.++..++.++-|+++...-++. ++ ++|
T Consensus 4 V~LPdg~~T~V~vr-pG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l 51 (73)
T cd01817 4 VILPDGSTTVVPTR-PGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPL 51 (73)
T ss_pred EECCCCCeEEEEec-CCCCHHHHHHHHHHHcCCChhHEEEEEecCCccc
Confidence 44678999899997 999999999999999999988776655 33 445
No 105
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=50.00 E-value=1e+02 Score=25.76 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=24.6
Q ss_pred EEEEeCCCC-EEEEEecCCCCCHHHHHHHHHHhhCC
Q 012310 13 LFVKLLNGK-TTTLNFTTCHVYGHEIKNRIYEATKI 47 (466)
Q Consensus 13 IfVKtldGk-T~tL~V~sPs~TVsdLK~rI~e~~GI 47 (466)
|+-|.-..+ ..+|.|+.+..+|.+||..|..+.++
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 344444443 57888887788999999999877666
No 106
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=48.88 E-value=1e+02 Score=25.98 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=41.2
Q ss_pred EEEEeCCCCE-EEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecCCCCcccc-CCCceeEEee
Q 012310 13 LFVKLLNGKT-TTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLKDRTVISD-DHITFNLVLR 79 (466)
Q Consensus 13 IfVKtldGkT-~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~DsstLss-~gsTL~LvlR 79 (466)
+.|...+... +-|.. .|+.+|+.+.++.++|+....+|+. .|-.+.++..+.. +..|..|+++
T Consensus 5 ~kv~~~~r~~k~Gv~A----~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~lm~L~ 71 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA----SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTLPDNTVLMLLE 71 (78)
T ss_dssp EEEEETTSSCEEEEEE----SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCSSSSEEEEEEE
T ss_pred EEEecCCCCceEeEEc----CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhCCCCCEEEEEC
Confidence 4455554433 33333 4799999999999999987777775 7888887643322 4556656553
No 107
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=48.45 E-value=30 Score=29.81 Aligned_cols=40 Identities=10% Similarity=0.133 Sum_probs=34.7
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHL 51 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~ 51 (466)
++|-|-.++|.+.++++. .+++..+|.+.++.+.++|.+.
T Consensus 2 V~L~V~Lpdg~~i~V~v~-~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 2 VELRIALPDKATVTVRVR-KNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred eEEEEEccCCCEEEEEEE-EcccHHHHHHHHHHHhCCCHHH
Confidence 456666789999999998 6899999999999999999874
No 108
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=47.50 E-value=68 Score=25.89 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=30.6
Q ss_pred EEeCCCC----EEEEEecCCCCCHHHHHHHHHHhhCCC--CCCeEEE
Q 012310 15 VKLLNGK----TTTLNFTTCHVYGHEIKNRIYEATKIP--THLQRLI 55 (466)
Q Consensus 15 VKtldGk----T~tL~V~sPs~TVsdLK~rI~e~~GIP--~e~QRLI 55 (466)
|-..++. ..+|.++ +.+|+.+|...+.++++|+ +..+.|+
T Consensus 7 Vy~~~~~~~~~~k~i~v~-~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 7 VYDGDGSPGSTYKTIKVS-SSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEETTSSSCCSEEEEEEE-TTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEcCCCCCCccEEEEEEC-CCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 3344555 8899997 7999999999999999993 3355663
No 109
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=46.38 E-value=74 Score=26.13 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=33.4
Q ss_pred cEEEEEEe-CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCC--CCeEEE
Q 012310 10 ALQLFVKL-LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPT--HLQRLI 55 (466)
Q Consensus 10 ~MqIfVKt-ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~--e~QRLI 55 (466)
.+.|+... .++...+|.++ +.+|+.+|...+.++.+++. ..+.|+
T Consensus 4 ~lrV~~~~~~~~~~kti~v~-~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 4 VLRVYVDDLPGGTYKTLRVS-SRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred EEEEecccCCCCcEEEEEEC-CCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 34555543 23667899997 79999999999999999975 345554
No 110
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=45.94 E-value=2e+02 Score=25.05 Aligned_cols=70 Identities=19% Similarity=0.132 Sum_probs=42.6
Q ss_pred CcEEEEEEeCC-CCEEEEEecCCCCCHHHHHHHHHHh------hCCCCC-CeEEEecCee--cCCCCccccC--------
Q 012310 9 KALQLFVKLLN-GKTTTLNFTTCHVYGHEIKNRIYEA------TKIPTH-LQRLIYSGLQ--LKDRTVISDD-------- 70 (466)
Q Consensus 9 ~~MqIfVKtld-GkT~tL~V~sPs~TVsdLK~rI~e~------~GIP~e-~QRLIfnGK~--L~DsstLss~-------- 70 (466)
..+.|.|...+ -.++++.++ +++++.+|.+.+..+ ..-++. ++.|.-.|+. |..+..|.++
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~-~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~ 94 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVN-PNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLK 94 (108)
T ss_pred CeEEEEEEEccCceeEEEEEC-CCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHh
Confidence 34555555443 246899997 899999999987765 112233 5556556654 4455555553
Q ss_pred -CCceeEEee
Q 012310 71 -HITFNLVLR 79 (466)
Q Consensus 71 -gsTL~LvlR 79 (466)
+..++|++.
T Consensus 95 ~~~~~~L~L~ 104 (108)
T smart00144 95 NGREPHLVLM 104 (108)
T ss_pred cCCCceEEEE
Confidence 446666654
No 111
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=45.90 E-value=28 Score=28.75 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHhhC-CCCCCeEEEecCeecCCCCcccc-----CCCceeEEe
Q 012310 30 CHVYGHEIKNRIYEATK-IPTHLQRLIYSGLQLKDRTVISD-----DHITFNLVL 78 (466)
Q Consensus 30 Ps~TVsdLK~rI~e~~G-IP~e~QRLIfnGK~L~DsstLss-----~gsTL~Lvl 78 (466)
|+.+|.+|++.|..... ....++.|.++|..|++...|.+ .+++|+|+.
T Consensus 3 ~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 3 PTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred hhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 68899999999986532 33456788999999988655544 245666654
No 112
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=44.95 E-value=94 Score=24.52 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=40.3
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC---CccccCCCceeEEeeecCC
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR---TVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds---stLss~gsTL~LvlRL~GG 83 (466)
++|+.+.+. +..|+.+|... +++|....-+.+|+..+... ..| ..++.|.++....||
T Consensus 5 vNG~~~~~~---~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~~~L-~~gD~ieIv~~VgGG 65 (65)
T PRK05863 5 VNEEQVEVD---EQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWATKL-RDGARLEVVTAVQGG 65 (65)
T ss_pred ECCEEEEcC---CCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhhhhc-CCCCEEEEEeeccCC
Confidence 357766653 35688887765 57888888889999977542 343 567888777666655
No 113
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=44.30 E-value=45 Score=29.47 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=28.0
Q ss_pred EEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCC
Q 012310 13 LFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPT 49 (466)
Q Consensus 13 IfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~ 49 (466)
|+|-.-+|++.+|+|. .-.+..+|+.++..++|++.
T Consensus 3 i~~I~~dG~tk~VNV~-~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVS-GCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE---S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEEC-CCCCHHHHHHHHHHHcCCcc
Confidence 5666789999999997 56689999999999999988
No 114
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=43.11 E-value=1e+02 Score=26.45 Aligned_cols=45 Identities=7% Similarity=0.048 Sum_probs=35.2
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEec
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYS 57 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfn 57 (466)
.|.|.|. +.|.++.+.++ |+.+..+|.++|..++++. ..+.|.|-
T Consensus 2 ~ikVKv~-~~~Dv~~i~v~-~~i~f~dL~~kIrdkf~~~-~~~~iKyk 46 (86)
T cd06408 2 KIRVKVH-AQDDTRYIMIG-PDTGFADFEDKIRDKFGFK-RRLKIKMK 46 (86)
T ss_pred cEEEEEE-ecCcEEEEEcC-CCCCHHHHHHHHHHHhCCC-CceEEEEE
Confidence 3555555 57889999998 8899999999999999985 45555553
No 115
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=41.80 E-value=71 Score=27.15 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=30.3
Q ss_pred eCCCCEEEEEecCC--CCCHHHHHHHHHHhhCCCCCCeEEEe
Q 012310 17 LLNGKTTTLNFTTC--HVYGHEIKNRIYEATKIPTHLQRLIY 56 (466)
Q Consensus 17 tldGkT~tL~V~sP--s~TVsdLK~rI~e~~GIP~e~QRLIf 56 (466)
++.|.+..+.++ | ..+..+|.+.|..+++++ .+.|.|
T Consensus 6 ty~~d~~rf~~~-~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVS-DSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEec-CCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 468888888887 7 679999999999999999 444544
No 116
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=41.72 E-value=1.1e+02 Score=24.51 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=37.9
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC---CccccCCCceeEEeeecCC
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR---TVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds---stLss~gsTL~LvlRL~GG 83 (466)
++|+.+.+ ..+..||.+|... +++++...-+.+||..+..+ .+.-..++.|.++--..||
T Consensus 5 vNG~~~~~--~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 5 INGNQIEV--PESVKTVAELLTH----LELDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred ECCEEEEc--CCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEEecCC
Confidence 35776544 3122578887754 57887777777899998764 2323457777666655554
No 117
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=39.43 E-value=60 Score=27.42 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHhhCCCCCCeEEEe--cCeecCCCCcccc-CCCceeEEe
Q 012310 32 VYGHEIKNRIYEATKIPTHLQRLIY--SGLQLKDRTVISD-DHITFNLVL 78 (466)
Q Consensus 32 ~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~DsstLss-~gsTL~Lvl 78 (466)
.|+.+|+.+.++.++||....+|+. .|-.+.++..+.. +..|+.+++
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tLp~nT~l~~l 70 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTLPDNTVLMLL 70 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcCCCCcEEEEE
Confidence 4799999999999999866666654 8999977644332 355665555
No 118
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=39.35 E-value=56 Score=27.61 Aligned_cols=40 Identities=8% Similarity=0.043 Sum_probs=34.2
Q ss_pred EEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEE
Q 012310 14 FVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRL 54 (466)
Q Consensus 14 fVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRL 54 (466)
.|-+++|+..++.+. |..|+.+|...++..-++.+....|
T Consensus 3 ~V~lPn~~~~~v~vr-p~~tv~dvLe~aCk~~~ldp~eh~L 42 (77)
T cd01818 3 WVCLPDNQPVLTYLR-PGMSVEDFLESACKRKQLDPMEHYL 42 (77)
T ss_pred EEECCCCceEEEEEC-CCCCHHHHHHHHHHhcCCChhHhee
Confidence 466789999999997 9999999999999999988765443
No 119
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.26 E-value=81 Score=30.85 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc-----------hHHHh----------hhhhhccCCCCCCCCCCC
Q 012310 164 KYVKKYRDESAVCMAKVEEAVRRACADGKRKAVKSN-----------EMEAK----------RMKIWMGKRKLGESDDED 222 (466)
Q Consensus 164 ~~~e~~~e~~e~~~~~V~eav~~a~~~gKrk~~~~~-----------~~~~k----------k~~~w~g~~~~~~~d~~~ 222 (466)
...+...+......++-+.+++.+|.-++++.+... ...++ +.--.+|..++++.+.||
T Consensus 116 ~E~~~l~~t~~n~ser~RRt~lR~m~k~~k~~kd~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~~de~~DD 195 (227)
T KOG3241|consen 116 AEQKLLDETIKNASERDRRTLLRAMNKDNKPNKDEEASRSDSSKVGDVFPSTSLEEYANKSGRVSGIIGHGSVPDEAHDD 195 (227)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhcccCcccChhhhhcchhhhcccccchhHHHHHhhhcchhhhcccCCCCcccccc
Confidence 334445555556667778888888877776665400 00111 223567888888877766
Q ss_pred CCCCCchhh
Q 012310 223 SSEDDDDEE 231 (466)
Q Consensus 223 ~~~~dd~~~ 231 (466)
+++.|.|+|
T Consensus 196 d~d~d~D~e 204 (227)
T KOG3241|consen 196 DSDPDSDEE 204 (227)
T ss_pred ccCCccccc
Confidence 554444433
No 120
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=37.10 E-value=1.2e+02 Score=26.07 Aligned_cols=39 Identities=13% Similarity=0.242 Sum_probs=31.4
Q ss_pred CCCCEEEEEecC----CCCCHHHHHHHHHHhhCCCC-CCeEEEe
Q 012310 18 LNGKTTTLNFTT----CHVYGHEIKNRIYEATKIPT-HLQRLIY 56 (466)
Q Consensus 18 ldGkT~tL~V~s----Ps~TVsdLK~rI~e~~GIP~-e~QRLIf 56 (466)
+.|..+-+.++. ++.+..+|+++|.+.+.+|+ ..+.|.|
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y 50 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTY 50 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEE
Confidence 577778888874 26899999999999999998 4555666
No 121
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=36.81 E-value=93 Score=28.36 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=44.0
Q ss_pred CCcEEEEEEeCC---CCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc
Q 012310 8 PKALQLFVKLLN---GKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD 69 (466)
Q Consensus 8 ~~~MqIfVKtld---GkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss 69 (466)
|..+.|.|.-.. .+..-|-|+ .+.||.++...|..+.++++...+|..++..+..+.++.+
T Consensus 25 PdrIPVIvEk~~~s~dK~KfllVP-~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 25 PGHVAVVVEAAEKAGSKVHFLALP-RDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred CCccEEEEeecCCCCCceEEEEcC-CCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 556777776432 234443465 5889999999999999999998777778866666666654
No 122
>PRK01777 hypothetical protein; Validated
Probab=36.69 E-value=2.7e+02 Score=24.11 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=41.4
Q ss_pred cEEEEEEe-CCCCE--EEEEecCCCCCHHHHHHHHHHhhCCCCCC-------eEEEecCeecCCCCccccCCCceeEEee
Q 012310 10 ALQLFVKL-LNGKT--TTLNFTTCHVYGHEIKNRIYEATKIPTHL-------QRLIYSGLQLKDRTVISDDHITFNLVLR 79 (466)
Q Consensus 10 ~MqIfVKt-ldGkT--~tL~V~sPs~TVsdLK~rI~e~~GIP~e~-------QRLIfnGK~L~DsstLss~gsTL~LvlR 79 (466)
.|+|.|-. ...+. ..+.++ +.+||.++... .||+... ..+.-+|+....++.| ..|++|.+...
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp-~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L-~dGDRVeIyrP 76 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQ-EGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAKLTDVL-RDGDRVEIYRP 76 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcC-CCCcHHHHHHH----cCCCccCcccccccceEEEeCeECCCCCcC-CCCCEEEEecC
Confidence 46666543 33443 556665 58899998765 4676652 2455688888777766 45778877666
Q ss_pred e
Q 012310 80 L 80 (466)
Q Consensus 80 L 80 (466)
|
T Consensus 77 L 77 (95)
T PRK01777 77 L 77 (95)
T ss_pred C
Confidence 5
No 123
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=36.16 E-value=74 Score=26.66 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecCCCCcccc-CCCceeEEe
Q 012310 31 HVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLKDRTVISD-DHITFNLVL 78 (466)
Q Consensus 31 s~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~DsstLss-~gsTL~Lvl 78 (466)
-.|+.+|+.+.++.+++|....+|+. .|-.+.++..+.. +..|+.+++
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tLp~nt~l~~L 68 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTLPDNTELMAL 68 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcCCCCcEEEEE
Confidence 35799999999999999976666654 8999977644332 455665555
No 124
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=35.67 E-value=74 Score=32.64 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=45.1
Q ss_pred EEEEEEeCCC-CEEEEEecCCCCCHHHHHHHHHHh-hCCCCCCeEEE----ecCeecCCCCccccCC--CceeEEeeecC
Q 012310 11 LQLFVKLLNG-KTTTLNFTTCHVYGHEIKNRIYEA-TKIPTHLQRLI----YSGLQLKDRTVISDDH--ITFNLVLRLLG 82 (466)
Q Consensus 11 MqIfVKtldG-kT~tL~V~sPs~TVsdLK~rI~e~-~GIP~e~QRLI----fnGK~L~DsstLss~g--sTL~LvlRL~G 82 (466)
|.|++.+-.+ ...+....+...|+.|++..|.+. ..+.+..+|+. ..|++|-++++|.+++ +-..+.++-+|
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vKDLG 80 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVKDLG 80 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEeccC
Confidence 5567766544 345544444588999999766544 56666555443 4799999988887753 23344555443
No 125
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=35.31 E-value=1.8e+02 Score=24.67 Aligned_cols=71 Identities=11% Similarity=0.086 Sum_probs=47.8
Q ss_pred cEEEEEEeCCCCE-EEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe-cCeecCCCCccc----cCCCceeEEeeec
Q 012310 10 ALQLFVKLLNGKT-TTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY-SGLQLKDRTVIS----DDHITFNLVLRLL 81 (466)
Q Consensus 10 ~MqIfVKtldGkT-~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf-nGK~L~DsstLs----s~gsTL~LvlRL~ 81 (466)
++.|.+.+-.... ..|+|+ .......+....++.+.+|+...-++. .|--+++.++-. -+++-|+|.+|-+
T Consensus 4 tFkitltSdp~lpfkvlsVp-E~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 4 TFKITLTSDPKLPFKVLSVP-ESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EEEEEecCCCCCcceEEecc-ccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 3455554433333 567775 456678888888899999988777666 577777765533 3677888887754
No 126
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=34.89 E-value=2.2e+02 Score=24.01 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=36.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe-cCeecCCCCcccc----CCCceeE
Q 012310 23 TTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY-SGLQLKDRTVISD----DHITFNL 76 (466)
Q Consensus 23 ~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf-nGK~L~DsstLss----~gsTL~L 76 (466)
+.++|+ .......+....++.+.||+..--++. .|--+++.++..+ +|+.|+|
T Consensus 18 kv~sVP-E~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 18 KVISVP-EEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred eEEecC-CCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 677886 466788888888999999998877776 5788888776433 5666655
No 127
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=34.81 E-value=1.5e+02 Score=25.49 Aligned_cols=40 Identities=8% Similarity=0.103 Sum_probs=33.1
Q ss_pred EEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCe
Q 012310 12 QLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQ 52 (466)
Q Consensus 12 qIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~Q 52 (466)
-|.|-+.||.+.+|.|+ .+.|+.++.+.+..+..+..+.-
T Consensus 4 vvkv~~~Dg~sK~l~V~-~~~Ta~dV~~~L~~K~h~~~~~~ 43 (85)
T cd01787 4 VVKVYSEDGASKSLEVD-ERMTARDVCQLLVDKNHCQDDSS 43 (85)
T ss_pred EEEEEecCCCeeEEEEc-CCCcHHHHHHHHHHHhCCCCCCC
Confidence 35556679999999998 79999999999999988766543
No 128
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=34.30 E-value=1.2e+02 Score=32.59 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=45.2
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhC-CCCCCeEEE--ecCeecCCC-Ccccc
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATK-IPTHLQRLI--YSGLQLKDR-TVISD 69 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~G-IP~e~QRLI--fnGK~L~Ds-stLss 69 (466)
..+-+|-|+..||....+.|. .+.||.||+..|...-. -+..+|.|+ |--++|.|. .||..
T Consensus 303 ~PtTsIQIRLanG~RlV~~fN-~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~ 367 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRLVLKFN-HSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEE 367 (380)
T ss_pred CCcceEEEEecCCceeeeecc-CcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHh
Confidence 456678889899999888888 56899999999997643 444566666 467788764 55543
No 129
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=34.06 E-value=75 Score=26.90 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=29.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEec
Q 012310 22 TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYS 57 (466)
Q Consensus 22 T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfn 57 (466)
|+.+.+. +..+..+|..+|.+++.+|++.-.|.|.
T Consensus 8 TVai~v~-~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAP-RGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEcc-CCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 4555665 6889999999999999999999999883
No 130
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=34.03 E-value=2e+02 Score=24.45 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHhhCCCCCCeEEE--ecCeecCCCCcccc-CCCceeEEe
Q 012310 32 VYGHEIKNRIYEATKIPTHLQRLI--YSGLQLKDRTVISD-DHITFNLVL 78 (466)
Q Consensus 32 ~TVsdLK~rI~e~~GIP~e~QRLI--fnGK~L~DsstLss-~gsTL~Lvl 78 (466)
.++.+|+.+.++.+.++....+|+ -.|-.+.++..+.. +.+|..|++
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~LpdnT~lm~L 70 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMVL 70 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhCCCCCEEEEE
Confidence 479999999999999987766665 48998877643322 345555554
No 131
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=31.99 E-value=1.5e+02 Score=31.30 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=42.7
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC---CccccCCCceeEEeeecCCCc
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR---TVISDDHITFNLVLRLLGGKG 85 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds---stLss~gsTL~LvlRL~GGKG 85 (466)
|+|.| +|+.+.+ . ...||.+|... ++++....-+.+||..+..+ .+.-..++.|.++.-..||-|
T Consensus 1 M~I~V---NGk~~el--~-e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~VgGGs~ 68 (326)
T PRK11840 1 MRIRL---NGEPRQV--P-AGLTIAALLAE----LGLAPKKVAVERNLEIVPRSEYGQVALEEGDELEIVHFVGGGSD 68 (326)
T ss_pred CEEEE---CCEEEec--C-CCCcHHHHHHH----cCCCCCeEEEEECCEECCHHHcCccccCCCCEEEEEEEecCCCC
Confidence 44444 5775444 3 45688888765 57888888888999999743 222345777777666666654
No 132
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=31.29 E-value=1.6e+02 Score=25.68 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=33.0
Q ss_pred EEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe
Q 012310 15 VKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY 56 (466)
Q Consensus 15 VKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf 56 (466)
++-..|.++.+.|+ .+.|..+|+.++.+..+++.. +.|.|
T Consensus 17 l~Y~GG~tr~i~V~-r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVD-RSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEc-CCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 45567899999998 679999999999999999876 55544
No 133
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=30.50 E-value=72 Score=36.89 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=35.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCee
Q 012310 19 NGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQ 60 (466)
Q Consensus 19 dGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~ 60 (466)
++..+.+.++ +..|+..++.+|...+|||...|-|+|.|..
T Consensus 323 ~~~~~~~~~~-~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 323 QATSHEYYVH-ADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred cceEEEEecC-hhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 5666778786 7899999999999999999999999997654
No 134
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=30.11 E-value=1.3e+02 Score=25.73 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=35.3
Q ss_pred EEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe
Q 012310 12 QLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY 56 (466)
Q Consensus 12 qIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf 56 (466)
|+.|+ +.|.++-++++ ...|...|..+|...+.||...+-|.|
T Consensus 2 ~fKv~-~~g~~RRf~~~-~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 2 QFKSS-FLGDTRRIVFP-DIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eEEEE-eCCceEEEecC-CCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 45564 67888888887 577899999999999999998777776
No 135
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.39 E-value=99 Score=30.95 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=40.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc
Q 012310 20 GKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD 69 (466)
Q Consensus 20 GkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss 69 (466)
+.-+-+.+. ...|+.+++.++....++.+-.|+++|+|..|.+...|..
T Consensus 156 ~~d~~lta~-~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeE 204 (231)
T KOG0013|consen 156 REDFWLTAP-HYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEE 204 (231)
T ss_pred hhheeeccc-CcCcHHHHHHHHHHhhccchhhheeeccCCceecccccee
Confidence 455666665 4789999999999999999999999999999988765543
No 136
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=28.22 E-value=2.8e+02 Score=27.85 Aligned_cols=44 Identities=9% Similarity=0.044 Sum_probs=31.9
Q ss_pred EEEEEEeCCCC-EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEE
Q 012310 11 LQLFVKLLNGK-TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLI 55 (466)
Q Consensus 11 MqIfVKtldGk-T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLI 55 (466)
+.|+|.+-.-. ..-..++ ++.||.+||.++.-..|.+++...|.
T Consensus 2 v~v~Iss~~~~~~~Ekr~~-~~ltl~q~K~KLe~~~G~~~~~M~l~ 46 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLS-NSLTLAQFKDKLELLTGTEAESMELE 46 (234)
T ss_pred eEEEEecccccchhhhhcC-CcCcHHHHHhhhhhhhCCCccceEEE
Confidence 45666653222 2334454 68899999999999999999988875
No 137
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=28.16 E-value=1.4e+02 Score=23.23 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=38.3
Q ss_pred EEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCCCceeE
Q 012310 13 LFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDHITFNL 76 (466)
Q Consensus 13 IfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~gsTL~L 76 (466)
|.|.+++|....+ + ...|+.|+-..|...++ -....-..||+.+..+..|. .+++|.+
T Consensus 1 I~v~lpdG~~~~~--~-~g~T~~d~A~~I~~~l~--~~~~~A~Vng~~vdl~~~L~-~~d~v~i 58 (60)
T PF02824_consen 1 IRVYLPDGSIKEL--P-EGSTVLDVAYSIHSSLA--KRAVAAKVNGQLVDLDHPLE-DGDVVEI 58 (60)
T ss_dssp EEEEETTSCEEEE--E-TTBBHHHHHHHHSHHHH--HCEEEEEETTEEEETTSBB--SSEEEEE
T ss_pred CEEECCCCCeeeC--C-CCCCHHHHHHHHCHHHH--hheeEEEEcCEECCCCCCcC-CCCEEEE
Confidence 5667799998774 4 46789999999986542 12233446888887777764 3555544
No 138
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=27.48 E-value=26 Score=27.54 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=19.0
Q ss_pred cCcchhhhhhhhccccccCcccccccCCCc-ccccc
Q 012310 87 FGSLLRGAATKAGQKKTNNFDACRDMSGRR-LRHVN 121 (466)
Q Consensus 87 FGS~LRa~g~r~~~kKt~n~daCRdL~GRR-lr~Vn 121 (466)
+-..|++++.+++..|+ +||.++.|- .+.+|
T Consensus 2 iePsl~~la~K~n~~k~----ICrkCyarl~~~A~n 33 (52)
T PF01020_consen 2 IEPSLRALAQKYNCDKM----ICRKCYARLPPRATN 33 (52)
T ss_dssp --HHHHHHHHHHHTS-E----EETTT--EE-TTSSS
T ss_pred cChHHHHHHHHHcccce----ecccccCcCCCCccc
Confidence 34578888887766555 999999986 44443
No 139
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=26.83 E-value=52 Score=23.18 Aligned_cols=28 Identities=43% Similarity=0.603 Sum_probs=21.4
Q ss_pred hchhhhhHHHHhcccccCCchhhhhhhh
Q 012310 420 LGLERLKSELQARGLKCGGTLQERAARL 447 (466)
Q Consensus 420 lg~~~lk~~l~~~glkcgGtl~era~Rl 447 (466)
+-..-||..|.++||...|+=.+=-+||
T Consensus 4 l~v~eLk~~l~~~gL~~~G~K~~Li~Rl 31 (35)
T PF02037_consen 4 LTVAELKEELKERGLSTSGKKAELIERL 31 (35)
T ss_dssp SHHHHHHHHHHHTTS-STSSHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 3456789999999999999976666665
No 140
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=26.64 E-value=4e+02 Score=22.73 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=37.8
Q ss_pred CCcEEEEEEeC-CCCEEEEEecCCCCCHHHHHHHHHHh--hCC-CC-C--CeEEEecCee--cCCCCccccC
Q 012310 8 PKALQLFVKLL-NGKTTTLNFTTCHVYGHEIKNRIYEA--TKI-PT-H--LQRLIYSGLQ--LKDRTVISDD 70 (466)
Q Consensus 8 ~~~MqIfVKtl-dGkT~tL~V~sPs~TVsdLK~rI~e~--~GI-P~-e--~QRLIfnGK~--L~DsstLss~ 70 (466)
...+.|.|... ...++++.+. ++.|+.+|..++... .++ +. . ++.|.-.|+. |..+..|.+|
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~-~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y 84 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVD-PNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQY 84 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEE-TTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGB
T ss_pred CCeEEEEEEEcCCCcEEEEEEC-CCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeecc
Confidence 44677777776 4557899997 899999999998765 222 21 1 4455555543 4556666664
No 141
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=26.51 E-value=2.4e+02 Score=25.12 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=40.2
Q ss_pred CCcEEEEEEeCC-CCE-----EEEEecCCCCCHHHHHHHHHHhhCCCCCC-eEEEecCeecCCCCcccc
Q 012310 8 PKALQLFVKLLN-GKT-----TTLNFTTCHVYGHEIKNRIYEATKIPTHL-QRLIYSGLQLKDRTVISD 69 (466)
Q Consensus 8 ~~~MqIfVKtld-GkT-----~tL~V~sPs~TVsdLK~rI~e~~GIP~e~-QRLIfnGK~L~DsstLss 69 (466)
|..|-|.|.-.. +.. .-+-|+ .+.||.+|...|..+..++++. .+|..|+.....+.++.+
T Consensus 22 p~~iPVIvE~~~~~~~p~l~k~KflVp-~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~ 89 (112)
T cd01611 22 PDRIPVIVERYPKSDLPDLDKKKYLVP-SDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQ 89 (112)
T ss_pred CCceEEEEEEcCCCCcccccCceEEec-CCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHH
Confidence 556777776433 221 122354 5889999999999999988876 566667754445555543
No 142
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=25.41 E-value=9.3e+02 Score=28.35 Aligned_cols=113 Identities=10% Similarity=0.082 Sum_probs=66.2
Q ss_pred EEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCCCceeEEeeecCCCcccCcch
Q 012310 12 QLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGGKGGFGSLL 91 (466)
Q Consensus 12 qIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GGKGGFGS~L 91 (466)
.|||=|+.|..+.| + ...|+-||-..|....|.- ...-..||+.+..+..| ..|++|.+...--++- --.-|
T Consensus 405 ~V~VfTPkG~~~~L--p-~gaT~lDfAy~iHt~iG~~--~~gAkvng~~v~l~~~L-~~GD~VeIits~~~~P--s~dWL 476 (743)
T PRK10872 405 RVYVFTPKGDVVDL--P-AGSTPLDFAYHIHSDVGHR--CIGAKIGGRIVPFTYQL-QMGDQIEIITQKQPNP--SRDWL 476 (743)
T ss_pred eEEEECCCCCeEEc--C-CCCcHHHHHHHHhHHHHhh--ceEEEECCEECCCCcCC-CCCCEEEEEeCCCCCC--ChhHh
Confidence 58898999985554 3 4789999999998776542 22334789888777766 3477776654211110 00001
Q ss_pred hhhhhhhccccccCcccccccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012310 92 RGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKKLEEWKAEEEERRLEKIAEEFLKKAAK 151 (466)
Q Consensus 92 Ra~g~r~~~kKt~n~daCRdL~GRRlr~Vn~ek~l~e~~~~~~~R~~Ek~~e~~~kk~~k 151 (466)
.. | -| -+.+-+.--++..|+.++...+.-...++...+..+
T Consensus 477 ~~-----------~-------lg-~v~T~rAR~kIr~~~k~~~~~~~i~~Gr~lL~k~l~ 517 (743)
T PRK10872 477 NP-----------N-------LG-YVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELE 517 (743)
T ss_pred cc-----------c-------cC-eeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0 00 123334445788999887655554455666665554
No 143
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=23.76 E-value=4e+02 Score=22.68 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHhhCCCCCC--eEEE--ecCeecCCCCcccc-CCCceeEEe
Q 012310 32 VYGHEIKNRIYEATKIPTHL--QRLI--YSGLQLKDRTVISD-DHITFNLVL 78 (466)
Q Consensus 32 ~TVsdLK~rI~e~~GIP~e~--QRLI--fnGK~L~DsstLss-~gsTL~Lvl 78 (466)
.|+.+|+.+.++.+.+|... .+|+ -.|-.+.++..+.. +..|..+++
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~l~~L 72 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCLPPNTKFVLL 72 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhCCCCcEEEEE
Confidence 47999999999999999433 5554 48999877644332 455665555
No 144
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=23.47 E-value=2.1e+02 Score=31.34 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=25.0
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeE
Q 012310 20 GKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQR 53 (466)
Q Consensus 20 GkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QR 53 (466)
|-|..+.|..---|...+-++|.+...||.+.-+
T Consensus 136 GpTcVvDFAliPGSTsNVVN~IL~~~DIp~~hkq 169 (499)
T PF09959_consen 136 GPTCVVDFALIPGSTSNVVNQILKKTDIPVDHKQ 169 (499)
T ss_pred CCceeeeeeecCCchHHHHHHHHHhCCCcHHHHH
Confidence 5566666653344678999999999999987544
No 145
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=21.98 E-value=4.2e+02 Score=22.64 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=35.3
Q ss_pred EEEEEecC-CCCCHHHHHHHHHHhhCCCCCCe-------------EEEecCeecC---CCCccccCCCceeEEeeecCC
Q 012310 22 TTTLNFTT-CHVYGHEIKNRIYEATKIPTHLQ-------------RLIYSGLQLK---DRTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 22 T~tL~V~s-Ps~TVsdLK~rI~e~~GIP~e~Q-------------RLIfnGK~L~---DsstLss~gsTL~LvlRL~GG 83 (466)
.+.+.++. ...||.+|.+.|.+.. |.... .+..||+.+. .-.+.-..++.|.+.+.+-||
T Consensus 18 ~~~~~~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 18 EHHVVLDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred EEEEeccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 34444542 3569999999998765 22111 1223555532 112223457889999988877
No 146
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=21.79 E-value=3.9e+02 Score=23.60 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=27.7
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCC
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTH 50 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e 50 (466)
.|+.-.+++++ ..+||.+|..++..+..++..
T Consensus 10 ~D~Tf~Tls~~-l~tTv~eli~~L~rK~~l~~~ 41 (97)
T cd01775 10 SDGTFTTLSCP-LNTTVSELIPQLAKKFYLPSG 41 (97)
T ss_pred cCCcEEEEEcC-CcCcHHHHHHHHHHhhcCCCC
Confidence 46777899997 799999999999999988874
No 147
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=20.36 E-value=3e+02 Score=24.99 Aligned_cols=52 Identities=8% Similarity=0.099 Sum_probs=38.8
Q ss_pred CcEEEEEEeCCC----CEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeec
Q 012310 9 KALQLFVKLLNG----KTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQL 61 (466)
Q Consensus 9 ~~MqIfVKtldG----kT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L 61 (466)
..++|.++...+ +.....++ ++.|++.|...|...++++...+-++|=+.-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~-~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKIN-PTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeC-cchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 457787775432 23566676 89999999999999999999988777744333
Done!