Query 012310
Match_columns 466
No_of_seqs 345 out of 1309
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 06:54:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n3k_B Ubiquitin; hydrolase, p 99.7 9.8E-17 3.4E-21 129.0 8.1 79 9-88 2-84 (85)
2 3mtn_B UBA80, ubcep1, ubiquiti 99.6 7.6E-16 2.6E-20 123.6 9.4 79 9-88 2-84 (85)
3 4fbj_B NEDD8; effector-HOST ta 99.6 4.2E-15 1.4E-19 122.3 8.8 77 11-89 1-81 (88)
4 1yx5_B Ubiquitin; proteasome, 99.6 5.1E-15 1.8E-19 123.5 9.3 84 11-95 1-88 (98)
5 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 7.3E-15 2.5E-19 119.1 9.5 78 7-85 4-85 (87)
6 3phx_B Ubiquitin-like protein 99.6 9E-15 3.1E-19 116.8 9.8 73 9-82 3-79 (79)
7 3u5e_m 60S ribosomal protein L 99.5 5.1E-16 1.7E-20 136.5 0.9 103 11-120 1-108 (128)
8 3dbh_I NEDD8; cell cycle, acti 99.5 1.5E-14 5E-19 117.2 9.2 76 7-83 9-88 (88)
9 2uyz_B Small ubiquitin-related 99.5 2.3E-14 7.8E-19 114.4 7.8 73 10-83 3-79 (79)
10 1ndd_A NEDD8, protein (ubiquit 99.5 3.7E-14 1.3E-18 111.0 8.7 72 11-83 1-76 (76)
11 4hcn_B Polyubiquitin, ubiquiti 99.5 3.4E-14 1.2E-18 119.0 8.8 75 8-83 20-98 (98)
12 1wyw_B Ubiquitin-like protein 99.5 2.8E-14 9.7E-19 119.6 8.2 75 8-83 19-97 (97)
13 1wy8_A NP95-like ring finger p 99.5 7.5E-14 2.6E-18 113.8 10.0 77 7-84 4-86 (89)
14 2kdi_A Ubiquitin, vacuolar pro 99.5 1.2E-13 4E-18 119.5 11.4 90 5-95 4-100 (114)
15 1sif_A Ubiquitin; hydrophobic 99.5 4.6E-14 1.6E-18 116.0 8.5 76 9-85 8-87 (88)
16 3q3f_A Ribonuclease/ubiquitin 99.5 4.7E-14 1.6E-18 132.8 9.3 80 9-89 104-187 (189)
17 2hj8_A Interferon-induced 17 k 99.5 5.2E-14 1.8E-18 115.6 8.2 75 10-85 4-82 (88)
18 3a9j_A Ubiquitin; protein comp 99.5 9.3E-14 3.2E-18 108.7 9.3 72 11-83 1-76 (76)
19 4dwf_A HLA-B-associated transc 99.5 1.2E-13 4E-18 113.1 9.6 76 8-84 3-81 (90)
20 3vdz_A Ubiquitin-40S ribosomal 99.5 1E-13 3.4E-18 119.2 9.3 74 9-83 34-111 (111)
21 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 1.1E-13 3.7E-18 114.3 9.1 73 11-84 2-78 (96)
22 2kan_A Uncharacterized protein 99.5 1.3E-13 4.5E-18 115.3 9.3 77 6-84 11-92 (94)
23 3v6c_B Ubiquitin; structural g 99.5 2.3E-13 8E-18 112.0 10.0 75 6-81 13-91 (91)
24 2xzm_9 RPS31E; ribosome, trans 99.4 1.1E-14 3.7E-19 137.2 0.1 73 11-85 1-73 (189)
25 3plu_A Ubiquitin-like modifier 99.4 3.1E-13 1.1E-17 114.2 8.9 70 7-77 18-91 (93)
26 3u30_A Ubiquitin, linear DI-ub 99.4 2.6E-13 8.9E-18 123.7 8.8 84 7-91 17-104 (172)
27 1we6_A Splicing factor, putati 99.4 3.2E-13 1.1E-17 115.6 8.8 76 8-84 25-108 (111)
28 1wgd_A Homocysteine-responsive 99.4 3.6E-13 1.2E-17 111.4 8.6 78 7-85 4-91 (93)
29 2l7r_A Ubiquitin-like protein 99.4 2.1E-13 7.3E-18 113.4 7.0 73 8-83 17-93 (93)
30 3rt3_B Ubiquitin-like protein 99.4 5.3E-13 1.8E-17 119.7 9.8 75 8-83 79-157 (159)
31 3l0w_B Monoubiquitinated proli 99.4 4.8E-13 1.6E-17 123.2 9.7 76 11-87 1-80 (169)
32 2ojr_A Ubiquitin; lanthide-bin 99.4 8.7E-13 3E-17 113.0 10.4 75 8-83 33-111 (111)
33 4eew_A Large proline-rich prot 99.4 7.3E-13 2.5E-17 107.9 9.3 72 7-79 14-88 (88)
34 2dzi_A Ubiquitin-like protein 99.4 1.6E-12 5.3E-17 103.5 10.3 74 7-81 4-81 (81)
35 1wx8_A Riken cDNA 4931431F19; 99.4 6E-13 2.1E-17 110.4 7.9 78 6-85 13-94 (96)
36 2kk8_A Uncharacterized protein 99.4 1.6E-12 5.5E-17 106.5 9.7 77 2-79 2-83 (84)
37 2faz_A Ubiquitin-like containi 99.4 1.7E-12 5.9E-17 103.1 9.5 71 10-81 2-78 (78)
38 1wgh_A Ubiquitin-like 3, HCG-1 99.4 1.8E-12 6.1E-17 113.4 10.3 77 7-84 13-103 (116)
39 3b1l_X E3 ubiquitin-protein li 99.0 9E-14 3.1E-18 109.8 0.0 71 11-82 1-75 (76)
40 1yqb_A Ubiquilin 3; structural 99.3 2.2E-12 7.6E-17 108.9 8.6 77 7-85 19-99 (100)
41 1se9_A Ubiquitin family; ubiqu 99.3 3.8E-12 1.3E-16 113.0 9.7 77 7-84 13-107 (126)
42 2gow_A HCG-1 protein, ubiquiti 99.3 3.1E-12 1.1E-16 113.2 9.1 78 6-84 13-104 (125)
43 3rt3_B Ubiquitin-like protein 99.3 2.3E-12 7.9E-17 115.5 8.3 104 10-135 2-113 (159)
44 1uh6_A Ubiquitin-like 5; beta- 99.3 2.2E-12 7.4E-17 110.3 7.5 69 8-77 26-98 (100)
45 2wyq_A HHR23A, UV excision rep 99.3 6.2E-12 2.1E-16 101.2 9.8 72 8-80 3-81 (85)
46 1j8c_A Ubiquitin-like protein 99.3 9.2E-12 3.1E-16 109.5 11.0 76 8-85 30-109 (125)
47 1we7_A SF3A1 protein; structur 99.3 4.5E-12 1.5E-16 109.3 8.8 76 8-84 23-112 (115)
48 3u30_A Ubiquitin, linear DI-ub 99.3 4.4E-12 1.5E-16 115.6 8.8 75 8-83 94-172 (172)
49 1wx7_A Ubiquilin 3; ubiquitin- 99.3 7.7E-12 2.6E-16 106.1 9.0 77 8-86 15-95 (106)
50 3b08_A Polyubiquitin-C, ubiqui 99.3 1.4E-11 4.8E-16 108.3 10.1 75 8-83 74-152 (152)
51 2lxa_A Ubiquitin-like protein 99.3 4.2E-12 1.4E-16 105.5 6.3 70 10-79 1-77 (87)
52 3u5c_f 40S ribosomal protein S 99.3 4.1E-13 1.4E-17 122.3 0.0 73 11-84 1-77 (152)
53 3m62_B UV excision repair prot 99.3 6.4E-12 2.2E-16 107.1 7.3 71 10-81 1-75 (106)
54 1ttn_A DC-UBP, dendritic cell- 99.3 1.1E-11 3.7E-16 105.4 8.4 75 8-83 21-99 (106)
55 1v2y_A 3300001G02RIK protein; 99.3 4.8E-12 1.6E-16 108.9 6.2 76 7-83 4-99 (105)
56 3b08_A Polyubiquitin-C, ubiqui 99.3 9.1E-12 3.1E-16 109.5 8.2 102 11-134 1-107 (152)
57 4a20_A Ubiquitin-like protein 99.3 1.6E-11 5.4E-16 104.2 9.0 73 6-79 15-95 (98)
58 2bwf_A Ubiquitin-like protein 99.2 1.6E-11 5.4E-16 96.7 8.3 69 9-79 3-75 (77)
59 1uel_A HHR23B, UV excision rep 99.2 2.5E-11 8.6E-16 101.0 9.9 74 11-85 1-82 (95)
60 2fnj_B Transcription elongatio 99.2 1E-11 3.6E-16 109.0 7.2 74 11-88 1-86 (118)
61 1v5o_A 1700011N24RIK protein; 99.2 1.6E-11 5.4E-16 103.7 8.1 77 7-84 4-89 (102)
62 2kdb_A Homocysteine-responsive 99.2 1.7E-11 6E-16 104.0 6.9 72 5-77 18-99 (99)
63 2klc_A Ubiquilin-1; ubiquitin- 99.2 6.2E-11 2.1E-15 100.1 10.0 73 8-82 23-99 (101)
64 4ajy_B Transcription elongatio 99.2 3.8E-11 1.3E-15 105.5 8.4 75 11-89 1-87 (118)
65 1wju_A NEDD8 ultimate buster-1 99.2 4.6E-11 1.6E-15 102.1 7.4 70 12-83 17-94 (100)
66 1wia_A Hypothetical ubiquitin- 99.1 2.2E-10 7.7E-15 94.8 8.5 74 6-83 3-81 (95)
67 2io1_B Small ubiquitin-related 99.1 2.7E-10 9.2E-15 95.8 9.0 76 7-83 4-83 (94)
68 4dbg_A Ranbp-type and C3HC4-ty 99.0 9.2E-10 3.1E-14 94.8 9.2 71 8-79 22-99 (105)
69 1x1m_A Ubiquitin-like protein 99.0 5.1E-10 1.7E-14 95.3 7.4 74 8-81 10-101 (107)
70 3ai5_A Yeast enhanced green fl 99.0 7.3E-10 2.5E-14 111.3 9.5 74 7-81 230-307 (307)
71 1v5t_A 8430435I17RIK protein; 99.0 4.3E-10 1.5E-14 92.9 6.5 70 7-78 4-81 (90)
72 1wgg_A Ubiquitin carboxyl-term 99.0 6.9E-10 2.4E-14 93.1 7.6 69 7-78 4-77 (96)
73 3m63_B Ubiquitin domain-contai 99.0 2.1E-10 7.2E-15 97.0 4.4 70 8-79 26-99 (101)
74 1wxv_A BAG-family molecular ch 99.0 1.2E-09 3.9E-14 90.0 8.5 71 7-79 4-84 (92)
75 2kd0_A LRR repeats and ubiquit 99.0 2.2E-09 7.5E-14 87.8 9.1 72 5-78 7-82 (85)
76 2dzm_A FAS-associated factor 1 99.0 8.5E-10 2.9E-14 94.0 6.8 72 8-81 6-83 (100)
77 1v86_A DNA segment, CHR 7, way 98.9 1.1E-09 3.6E-14 91.6 6.2 69 7-78 14-86 (95)
78 2d07_B Ubiquitin-like protein 98.9 4E-09 1.4E-13 88.3 9.4 75 8-83 15-93 (93)
79 2dzj_A Synaptic glycoprotein S 98.9 2.3E-09 7.8E-14 88.8 7.8 66 5-71 5-76 (88)
80 1oqy_A HHR23A, UV excision rep 98.9 1.4E-09 4.7E-14 111.7 7.6 77 8-85 5-89 (368)
81 2io0_B Small ubiquitin-related 98.9 5.8E-09 2E-13 87.3 9.9 75 9-84 4-82 (91)
82 2daf_A FLJ35834 protein; hypot 98.9 4.9E-09 1.7E-13 92.0 8.3 72 8-80 13-89 (118)
83 1wz0_A Ubiquitin-like protein 98.9 9.7E-09 3.3E-13 88.0 9.6 76 8-84 22-101 (104)
84 2kjr_A CG11242; UBL, ubiquitin 98.8 1.5E-08 5.2E-13 85.2 9.2 70 7-77 12-93 (95)
85 1wf9_A NPL4 family protein; be 98.7 1.5E-08 5.2E-13 86.3 6.7 71 8-79 5-94 (107)
86 2eke_C Ubiquitin-like protein 98.7 4E-08 1.4E-12 84.6 9.0 74 8-83 29-106 (106)
87 2k8h_A Small ubiquitin protein 98.7 3.6E-08 1.2E-12 85.4 7.7 76 8-84 24-103 (110)
88 2kj6_A Tubulin folding cofacto 98.7 5.4E-08 1.8E-12 82.3 7.8 70 7-77 11-93 (97)
89 1v6e_A Cytoskeleton-associated 98.6 2E-07 6.7E-12 77.5 8.6 70 8-78 5-86 (95)
90 1t0y_A Tubulin folding cofacto 98.6 2.3E-07 7.7E-12 80.9 9.2 69 9-78 5-85 (122)
91 1wm3_A Ubiquitin-like protein 98.5 3.1E-07 1.1E-11 72.9 9.1 67 10-77 1-71 (72)
92 4b6w_A Tubulin-specific chaper 98.5 1.1E-07 3.6E-12 78.6 6.4 69 10-79 2-83 (86)
93 3a4r_A Nfatc2-interacting prot 98.5 6.3E-07 2.2E-11 72.6 9.3 70 7-77 4-78 (79)
94 3shq_A UBLCP1; phosphatase, hy 98.4 2.7E-07 9.1E-12 93.0 7.4 67 9-77 4-77 (320)
95 2kzr_A Ubiquitin thioesterase 98.4 2.2E-07 7.5E-12 75.8 5.5 66 11-78 1-76 (86)
96 3kyd_D Small ubiquitin-related 98.1 1.2E-05 4.2E-10 70.2 9.9 73 9-82 39-115 (115)
97 3pge_A SUMO-modified prolifera 98.0 2.6E-05 9E-10 74.0 9.6 76 8-85 27-106 (200)
98 1wjn_A Tubulin-folding protein 97.9 3.9E-05 1.3E-09 63.7 8.5 70 8-78 7-91 (97)
99 3tix_A Ubiquitin-like protein 97.8 2.8E-05 9.4E-10 73.7 6.9 77 8-86 55-135 (207)
100 3v7o_A Minor nucleoprotein VP3 97.3 3.2E-05 1.1E-09 74.2 0.2 74 8-83 19-96 (227)
101 4efo_A Serine/threonine-protei 97.2 0.00043 1.5E-08 58.5 6.1 45 18-63 21-65 (94)
102 3uf8_A Ubiquitin-like protein 97.1 0.0013 4.3E-08 62.3 8.7 76 7-84 18-97 (209)
103 3ix6_A TS, tsase, thymidylate 96.6 0.00022 7.5E-09 73.1 -1.6 86 8-95 19-108 (360)
104 2pjh_A Protein NPL4, nuclear p 96.6 0.0018 6.2E-08 52.5 4.1 66 10-77 4-78 (80)
105 2jxx_A Nfatc2-interacting prot 96.4 0.016 5.6E-07 48.9 9.3 69 7-76 22-95 (97)
106 3goe_A DNA repair protein RAD6 96.4 0.031 1E-06 45.9 10.2 72 5-77 4-80 (82)
107 2al3_A TUG long isoform; TUG U 96.0 0.014 4.8E-07 48.9 6.5 69 9-78 8-80 (90)
108 4da1_A Protein phosphatase 1K, 95.5 0.0024 8.2E-08 65.0 0.0 77 9-87 29-109 (389)
109 2l76_A Nfatc2-interacting prot 95.0 0.13 4.3E-06 43.6 8.9 69 7-77 18-90 (95)
110 3qx1_A FAS-associated factor 1 94.3 0.26 8.8E-06 39.6 9.1 62 6-69 3-69 (84)
111 2kc2_A Talin-1, F1; FERM, adhe 93.6 0.088 3E-06 46.6 5.4 38 12-50 13-50 (128)
112 2l32_A Small archaeal modifier 93.3 0.21 7.3E-06 39.8 6.7 66 11-83 1-66 (74)
113 1wj4_A KIAA0794 protein; UBX d 91.8 0.82 2.8E-05 39.8 9.2 60 8-69 41-105 (124)
114 2dzk_A UBX domain-containing p 91.8 0.91 3.1E-05 38.5 9.2 61 8-69 11-76 (109)
115 3rpf_C Molybdopterin convertin 90.7 0.77 2.6E-05 35.8 7.1 71 11-83 1-74 (74)
116 1oey_A P67-PHOX, neutrophil cy 89.5 0.86 2.9E-05 37.5 6.6 49 6-57 1-49 (83)
117 1ryj_A Unknown; beta/alpha pro 89.1 3 0.0001 32.3 9.4 67 10-83 4-70 (70)
118 1vjk_A Molybdopterin convertin 87.0 4.2 0.00015 33.2 9.5 76 6-83 5-98 (98)
119 1tyg_B YJBS; alpha beta barrel 84.9 1.4 4.6E-05 36.3 5.3 67 7-83 17-87 (87)
120 2cr5_A Reproduction 8; UBX dom 84.0 3.5 0.00012 34.7 7.7 59 9-69 22-84 (109)
121 3po0_A Small archaeal modifier 81.8 7.6 0.00026 30.8 8.6 61 21-83 18-89 (89)
122 3dwg_C 9.5 kDa culture filtrat 80.6 4.2 0.00015 32.7 6.7 70 11-83 1-93 (93)
123 1s3s_G P47 protein; AAA ATPase 79.6 4.2 0.00014 35.3 6.8 61 8-69 50-114 (127)
124 2bps_A YUKD protein; ubiquitin 78.6 5.7 0.00019 32.3 6.8 61 9-70 3-70 (81)
125 2i1j_A Moesin; FERM, coiled-co 77.1 8.8 0.0003 41.3 9.7 71 8-80 2-82 (575)
126 1h4r_A Merlin; FERM, neurofibr 76.1 11 0.00038 36.5 9.5 71 8-80 20-99 (314)
127 1wgk_A Riken cDNA 2900073H19 p 74.3 19 0.00064 30.7 9.3 76 9-84 10-109 (114)
128 1f0z_A THis protein; ubiquitin 73.0 4.4 0.00015 30.8 4.5 59 18-83 5-66 (66)
129 1fm0_D Molybdopterin convertin 71.2 8.8 0.0003 29.7 6.0 53 30-83 24-81 (81)
130 2c7h_A RBBP6, retinoblastoma-b 70.3 34 0.0012 28.2 9.5 72 9-81 5-81 (86)
131 3ivf_A Talin-1; FERM domain, c 68.8 19 0.00064 35.8 9.3 73 10-84 3-96 (371)
132 1vd2_A Protein kinase C, IOTA 68.0 23 0.00079 29.2 8.1 49 7-57 3-52 (89)
133 3qij_A Protein 4.1; cytoskelet 66.6 8.6 0.0003 37.4 6.2 48 8-56 15-63 (296)
134 2cu3_A Unknown function protei 65.7 7.5 0.00026 29.3 4.4 58 18-83 4-64 (64)
135 2kl0_A Putative thiamin biosyn 64.9 5.5 0.00019 31.4 3.6 59 18-84 5-66 (73)
136 1zrj_A E1B-55KDA-associated pr 64.6 4.1 0.00014 30.4 2.6 37 412-448 5-41 (50)
137 2qjl_A URM1, ubiquitin-related 63.2 17 0.0006 29.6 6.5 72 11-83 2-99 (99)
138 1ef1_A Moesin; membrane, FERM 63.0 13 0.00044 35.6 6.5 69 10-80 1-79 (294)
139 3ivf_A Talin-1; FERM domain, c 59.6 15 0.0005 36.6 6.5 48 8-56 83-131 (371)
140 2k5p_A THis protein, thiamine- 59.5 7.2 0.00025 31.1 3.4 63 18-85 5-71 (78)
141 2q5w_D Molybdopterin convertin 58.8 19 0.00064 27.5 5.7 59 22-83 17-77 (77)
142 1ip9_A BEM1 protein; ubiquitin 58.2 37 0.0013 28.0 7.5 43 9-55 11-53 (85)
143 1rws_A Hypothetical protein PF 57.5 5.5 0.00019 31.3 2.4 53 25-83 25-77 (77)
144 2kvr_A Ubiquitin carboxyl-term 57.3 8.8 0.0003 33.6 3.9 34 22-56 57-90 (130)
145 2l52_A Methanosarcina acetivor 57.2 15 0.0005 30.1 5.0 71 10-83 3-99 (99)
146 2kmm_A Guanosine-3',5'-BIS(dip 57.1 13 0.00045 28.0 4.5 61 11-77 1-61 (73)
147 3au4_A Myosin-X; protein-prote 55.0 25 0.00084 37.0 7.6 47 9-56 215-263 (555)
148 1wgr_A Growth factor receptor- 53.2 31 0.0011 29.0 6.5 44 7-51 6-49 (100)
149 1j0g_A Hypothetical protein 18 48.5 65 0.0022 26.5 7.3 60 23-83 26-90 (92)
150 2daj_A KIAA0977 protein, COBL- 48.5 38 0.0013 28.1 6.0 63 8-71 8-73 (91)
151 1h1j_S THO1 protein; SAP domai 47.5 11 0.00038 28.1 2.5 33 416-448 4-36 (51)
152 2kvu_A MKL/myocardin-like prot 46.9 8.8 0.0003 31.0 2.0 34 416-449 25-58 (75)
153 2do1_A Nuclear protein HCC-1; 44.1 11 0.00036 28.7 1.9 34 416-449 9-42 (55)
154 4a3p_A Ubiquitin carboxyl-term 43.2 35 0.0012 31.9 5.8 60 23-83 142-212 (217)
155 3jyu_A Ubiquitin carboxyl-term 43.2 51 0.0017 31.0 7.0 60 23-83 154-224 (231)
156 2g1e_A Hypothetical protein TA 42.5 71 0.0024 24.8 6.8 59 24-83 18-90 (90)
157 4e71_A Plexin-B2, MM1; transme 40.8 1E+02 0.0035 26.4 7.8 55 8-63 9-77 (111)
158 2k9x_A Tburm1, uncharacterized 36.9 42 0.0015 28.4 4.8 73 10-84 4-103 (110)
159 3pvl_A Myosin VIIA isoform 1; 36.8 64 0.0022 35.1 7.4 47 9-56 262-309 (655)
160 4eut_A Serine/threonine-protei 36.0 83 0.0028 30.7 7.5 41 20-61 321-361 (396)
161 1wgy_A RAP guanine nucleotide 35.5 64 0.0022 27.4 5.6 53 7-60 6-61 (104)
162 3qa8_A MGC80376 protein; kinas 32.4 41 0.0014 36.9 5.0 48 18-66 319-367 (676)
163 4eku_A Protein-tyrosine kinase 32.2 1.2E+02 0.0041 30.8 8.2 63 18-81 35-117 (392)
164 3hvz_A Uncharacterized protein 31.4 93 0.0032 24.7 5.7 60 12-77 7-66 (78)
165 2eel_A Cell death activator CI 31.1 59 0.002 27.0 4.6 66 10-79 9-78 (91)
166 2j0j_A Focal adhesion kinase 1 30.0 92 0.0031 33.3 7.2 71 10-81 6-97 (656)
167 4gmv_A RAS-associated and plec 28.2 1.1E+02 0.0037 30.0 6.8 41 10-51 31-71 (281)
168 3tca_A Amyloid beta A4 precurs 28.1 1.2E+02 0.0041 28.2 7.0 42 10-52 34-75 (291)
169 1f2r_I Inhibitor of caspase-ac 27.7 1E+02 0.0036 26.0 5.6 48 32-79 37-89 (100)
170 2ylm_A Ubiquitin carboxyl-term 23.2 59 0.002 34.5 4.1 33 22-55 37-69 (530)
171 2juo_A GA-binding protein alph 20.9 1.4E+02 0.0048 24.7 4.9 50 31-80 12-65 (89)
172 2hj1_A Hypothetical protein; s 20.5 2E+02 0.0069 23.7 6.0 74 5-80 7-86 (97)
No 1
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=9.8e-17 Score=129.05 Aligned_cols=79 Identities=35% Similarity=0.528 Sum_probs=67.2
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGK 84 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGK 84 (466)
++|+|+|++++|+++++.+. +++||.+||.+|++.++||++.|+|+|+|++|.|+.+|.+| +++|+|++|++||+
T Consensus 2 s~m~i~vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 47999999999999999997 89999999999999999999999999999999999999886 57999999999999
Q ss_pred cccC
Q 012310 85 GGFG 88 (466)
Q Consensus 85 GGFG 88 (466)
|+||
T Consensus 81 g~~~ 84 (85)
T 3n3k_B 81 GGGS 84 (85)
T ss_dssp ----
T ss_pred CCCC
Confidence 9986
No 2
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=7.6e-16 Score=123.59 Aligned_cols=79 Identities=42% Similarity=0.569 Sum_probs=69.9
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGK 84 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGK 84 (466)
++|+|+|++++|+++++.++ ++.||.+||.+|++..+||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++||+
T Consensus 2 s~m~i~vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp -CEEEEEECTTSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred CeEEEEEEcCCCCEEEEEEC-CCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 47999999999999999997 89999999999999999999999999999999999999886 57999999999999
Q ss_pred cccC
Q 012310 85 GGFG 88 (466)
Q Consensus 85 GGFG 88 (466)
||.+
T Consensus 81 ggg~ 84 (85)
T 3mtn_B 81 GGGS 84 (85)
T ss_dssp ----
T ss_pred CCCC
Confidence 8753
No 3
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.58 E-value=4.2e-15 Score=122.27 Aligned_cols=77 Identities=36% Similarity=0.508 Sum_probs=67.1
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCCcc
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGKGG 86 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGKGG 86 (466)
|+|+|++++|+++++.|+ +++||.+||.+|++.++||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++||+ .
T Consensus 1 M~I~Vk~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~-~ 78 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIE-PTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG-G 78 (88)
T ss_dssp CEEEEEETTCCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-----
T ss_pred CEEEEEcCCCCEEEEEEC-CCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC-C
Confidence 899999999999999997 89999999999999999999999999999999999999886 57999999999998 4
Q ss_pred cCc
Q 012310 87 FGS 89 (466)
Q Consensus 87 FGS 89 (466)
+|+
T Consensus 79 ~~~ 81 (88)
T 4fbj_B 79 LRQ 81 (88)
T ss_dssp ---
T ss_pred CCc
Confidence 443
No 4
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.57 E-value=5.1e-15 Score=123.52 Aligned_cols=84 Identities=40% Similarity=0.538 Sum_probs=68.6
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCCcc
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGKGG 86 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGKGG 86 (466)
|+|+|++++|+++.+.|. ++.||.+||.+|+...+||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++||+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~-~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i 79 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDP 79 (98)
T ss_dssp CEEEEEETTSCEEEEECC-TTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred CEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence 899999999999999997 89999999999999999999999999999999999999886 5799999999999999
Q ss_pred cCcchhhhh
Q 012310 87 FGSLLRGAA 95 (466)
Q Consensus 87 FGS~LRa~g 95 (466)
|++++.+..
T Consensus 80 ~~~~v~~~~ 88 (98)
T 1yx5_B 80 NSSSVDKLA 88 (98)
T ss_dssp ---------
T ss_pred ccccCCCch
Confidence 999999754
No 5
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=7.3e-15 Score=119.15 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=73.0
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecC
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLG 82 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~G 82 (466)
.+.+|+|+|++++|+++++.|. ++.||.+||.+|++..+||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++|
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAIN-PNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEEC-SSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeC-CCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccC
Confidence 5678999999999999999997 89999999999999999999999999999999999999875 579999999999
Q ss_pred CCc
Q 012310 83 GKG 85 (466)
Q Consensus 83 GKG 85 (466)
|+.
T Consensus 83 G~~ 85 (87)
T 1wh3_A 83 GPS 85 (87)
T ss_dssp CSC
T ss_pred CCC
Confidence 984
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.57 E-value=9e-15 Score=116.81 Aligned_cols=73 Identities=21% Similarity=0.300 Sum_probs=69.2
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLG 82 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~G 82 (466)
.+|+|+|++++|+++++.+. ++.||.+||.+|+...|||++.|+|+|+|+.|.|+.+|.+| +++|+|++||+|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVR-LTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEEC-TTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEEC-CcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 47999999999999999997 89999999999999999999999999999999999999986 579999999987
No 7
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.55 E-value=5.1e-16 Score=136.48 Aligned_cols=103 Identities=38% Similarity=0.528 Sum_probs=21.1
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCCcc
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGKGG 86 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGKGG 86 (466)
|+|+|++++|++++|.|+ +++||.+||.+|++.+|||++.|+|+|+|++|.|+.+|.+| +++|+|++|++||+
T Consensus 1 M~I~Vk~~~G~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~-- 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI-- 77 (128)
T ss_dssp -----------------------------------------------------------------------------C--
T ss_pred CEEEEEeCCCCEEEEEeC-CCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC--
Confidence 899999999999999997 89999999999999999999999999999999999999886 57999999999997
Q ss_pred cCcchhhhhhhhccccccCcccccccCCCc-cccc
Q 012310 87 FGSLLRGAATKAGQKKTNNFDACRDMSGRR-LRHV 120 (466)
Q Consensus 87 FGS~LRa~g~r~~~kKt~n~daCRdL~GRR-lr~V 120 (466)
+...|+..+.+.+. |.-+||.|+.|- .++.
T Consensus 78 ~~~sl~~la~k~n~----~~~ic~~~~~~~~~~~~ 108 (128)
T 3u5e_m 78 IEPSLKALASKYNC----DKSVCRKCYARLPPRAT 108 (128)
T ss_dssp CCHHHHHHHHHHHT----SCEEETTTCCEECTTCS
T ss_pred CChhHHHHHHHhhc----ceEeeccccccCCchhh
Confidence 45567887766654 445999999886 4443
No 8
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.55 E-value=1.5e-14 Score=117.22 Aligned_cols=76 Identities=38% Similarity=0.511 Sum_probs=71.5
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecC
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLG 82 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~G 82 (466)
+...|+|+|++++|++++|.|. ++.||.+||.+|++..+||++.|+|+|+|++|.|+.+|.+| +++|+|++|++|
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIE-PTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred CCCcEEEEEEcCCCCEEEEEEC-CCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 4568999999999999999997 89999999999999999999999999999999999999886 579999999999
Q ss_pred C
Q 012310 83 G 83 (466)
Q Consensus 83 G 83 (466)
|
T Consensus 88 G 88 (88)
T 3dbh_I 88 G 88 (88)
T ss_dssp C
T ss_pred C
Confidence 8
No 9
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.52 E-value=2.3e-14 Score=114.45 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=68.7
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
.|+|+|++++|+++++.+. +++||.+||++|++..|||+++|+|+|+|++|.|+.+|.+| +++|+|++|++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~-~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVK-MTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEE-TTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEEC-CCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6999999999999999998 89999999999999999999999999999999999999875 6799999999997
No 10
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.51 E-value=3.7e-14 Score=110.98 Aligned_cols=72 Identities=38% Similarity=0.512 Sum_probs=66.7
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
|+|+|++++|+++++.+. ++.||.+||.+|++..+||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++||
T Consensus 1 M~i~vk~~~g~~~~~~v~-~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIE-PTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEEC-CCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 899999999999999997 89999999999999999999999999999999999999886 6799999999998
No 11
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.4e-14 Score=119.04 Aligned_cols=75 Identities=43% Similarity=0.628 Sum_probs=69.6
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
...|+|+|++++|+++.|.|. ++.||.+||.+|++..+||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVE-SSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 467999999999999999997 89999999999999999999999999999999999999886 5699999999998
No 12
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.51 E-value=2.8e-14 Score=119.57 Aligned_cols=75 Identities=12% Similarity=0.190 Sum_probs=70.8
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
+..|+|+|++++|++++|.|. +++||.+||.+|+...|||+++|+|+|+|++|.|+.+|.+| +++|+|++|++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~-~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVK-MTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEE-TTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 457999999999999999998 89999999999999999999999999999999999999875 6799999999998
No 13
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=7.5e-14 Score=113.81 Aligned_cols=77 Identities=23% Similarity=0.389 Sum_probs=71.0
Q ss_pred CCCcEEEEEEeCCC-CEEEE-EecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeee
Q 012310 7 SPKALQLFVKLLNG-KTTTL-NFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRL 80 (466)
Q Consensus 7 s~~~MqIfVKtldG-kT~tL-~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL 80 (466)
....|+|+|++++| ++++| .|. ++.||.+||.+|++..+||++.|+|+|+|++|.|+.+|.+| +++|+|++|+
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~-~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVS-RKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEEC-TTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred CCCcEEEEEEECCCCceEEEEecC-CCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeC
Confidence 45789999999999 69999 597 89999999999999999999999999999999999998875 5799999999
Q ss_pred cCCC
Q 012310 81 LGGK 84 (466)
Q Consensus 81 ~GGK 84 (466)
+||+
T Consensus 83 ~gG~ 86 (89)
T 1wy8_A 83 DSGP 86 (89)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9996
No 14
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.2e-13 Score=119.49 Aligned_cols=90 Identities=38% Similarity=0.484 Sum_probs=81.1
Q ss_pred CCCCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeee
Q 012310 5 ATSPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRL 80 (466)
Q Consensus 5 ~~s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL 80 (466)
+|-.-.++|+|++++|+++++.|. ++.||.+||.+|++..|||++.|+|+|+|++|.|+.+|.+| +++|+|++|+
T Consensus 4 ~~~~~~~~i~vk~l~G~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 4 HHHHGEFQIFAKTLTGKTITLEVE-SSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRL 82 (114)
T ss_dssp SCCCCCCEEEEEETTCCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECC
T ss_pred cccCCcEEEEEEeCCCcEEEEEEC-CCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 445678999999999999999997 89999999999999999999999999999999999999886 5799999999
Q ss_pred cCCCcccCc---chhhhh
Q 012310 81 LGGKGGFGS---LLRGAA 95 (466)
Q Consensus 81 ~GGKGGFGS---~LRa~g 95 (466)
+||+.+|.. .+.|..
T Consensus 83 ~GG~~~~~~~~~~~~g~~ 100 (114)
T 2kdi_A 83 RGGSMGGAADEEELIRKA 100 (114)
T ss_dssp CSSCCCSSCSSSHHHHHH
T ss_pred CCCceeeccccccccCce
Confidence 999999977 445443
No 15
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=4.6e-14 Score=116.01 Aligned_cols=76 Identities=42% Similarity=0.576 Sum_probs=64.1
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGK 84 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGK 84 (466)
.-|+|+|++++|+++.+.|+ ++.||.+||.+|++.++||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++||+
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEME-PSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp --CEEEEEETTSCEEEEECC-TTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred cceEEEEEeCCCCEEEEEEC-CCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 46999999999999999997 89999999999999999999999999999999999999886 57999999999997
Q ss_pred c
Q 012310 85 G 85 (466)
Q Consensus 85 G 85 (466)
.
T Consensus 87 ~ 87 (88)
T 1sif_A 87 L 87 (88)
T ss_dssp -
T ss_pred C
Confidence 3
No 16
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.49 E-value=4.7e-14 Score=132.78 Aligned_cols=80 Identities=41% Similarity=0.539 Sum_probs=75.5
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGK 84 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGK 84 (466)
-.|||||++++|++++|.|. +++||.+||.+|++.++||+++|+|+|+|++|.|+.+|.+| +++|+|++|++||+
T Consensus 104 ~eMqI~VKtl~Gkt~~l~V~-~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 104 YGGQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp CCEEEEEECTTSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred cceeeeeecCCCCEEEEEeC-CCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 46999999999999999997 89999999999999999999999999999999999999886 57999999999999
Q ss_pred cccCc
Q 012310 85 GGFGS 89 (466)
Q Consensus 85 GGFGS 89 (466)
++|..
T Consensus 183 ~~fvk 187 (189)
T 3q3f_A 183 QTFTK 187 (189)
T ss_dssp CCCCC
T ss_pred cceEe
Confidence 99974
No 17
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.49 E-value=5.2e-14 Score=115.58 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=65.8
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCCc
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGKG 85 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGKG 85 (466)
+|+|+|++++|+++++.|. ++.||.+||.+|+...|||++.|+|+|+|++|.|+.+|.+| +++|+|+++++|||-
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVR-LTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGLE 82 (88)
T ss_dssp EEEEEEEETTSCEEEEEEE-SSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC------
T ss_pred cEEEEEECCCCCEEEEEEC-CCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCcc
Confidence 7999999999999999998 89999999999999999999999999999999999999875 679999999999984
No 18
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.49 E-value=9.3e-14 Score=108.71 Aligned_cols=72 Identities=44% Similarity=0.627 Sum_probs=68.3
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
|+|+|++++|+++.+.++ ++.||.+||.+|++..++|++.|+|+|+|+.|.|+.+|.+| +++|+|++|++||
T Consensus 1 M~i~vk~~~g~~~~i~v~-~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEEC-CCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 899999999999999997 89999999999999999999999999999999999999886 6799999999998
No 19
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.48 E-value=1.2e-13 Score=113.08 Aligned_cols=76 Identities=30% Similarity=0.429 Sum_probs=69.7
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC---CCceeEEeeecCCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD---HITFNLVLRLLGGK 84 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~---gsTL~LvlRL~GGK 84 (466)
+.+|+|||++++|++++|.|. ++.||.+||.+|+..++||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++++-
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVG-AQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEE-TTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCTTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEEC-CCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCCCCcEEEEEecCCCCC
Confidence 578999999999999999998 89999999999999999999999999999999999999886 57999999987764
No 20
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.47 E-value=1e-13 Score=119.16 Aligned_cols=74 Identities=45% Similarity=0.611 Sum_probs=69.4
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
..|+|+|++++|+++.|.|. ++.||.+||.+|+...+||++.|+|+|+|++|.|+.+|.+| +++|+|++|++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeC-CCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 57999999999999999997 89999999999999999999999999999999999999886 5799999999998
No 21
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.47 E-value=1.1e-13 Score=114.34 Aligned_cols=73 Identities=42% Similarity=0.568 Sum_probs=67.9
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGK 84 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGK 84 (466)
|+|+|++++|++++|.|. ++.||.+||.+|+..++||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++||.
T Consensus 2 m~i~vk~~~g~~~~~~v~-~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEEC-CCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 899999999999999997 89999999999999999999999999999999999999886 57999999999985
No 22
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.47 E-value=1.3e-13 Score=115.30 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=70.9
Q ss_pred CCCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC-CccccC----CCceeEEeee
Q 012310 6 TSPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR-TVISDD----HITFNLVLRL 80 (466)
Q Consensus 6 ~s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds-stLss~----gsTL~LvlRL 80 (466)
.+...|+|||+++.| ++++.|. ++.||.+||.+|+..+|||+++|+|+|+|++|.|+ .+|.+| +++|+|++|+
T Consensus 11 ~~~~~~~I~Vk~~~~-~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 11 AAVRKIHVTVKFPSK-QFTVEVD-RTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp SSSCCEEEEEECSSC-EEEEEEC-TTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred cCCCCEEEEEEcCCc-EEEEEEC-CCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 346789999999988 8999997 89999999999999999999999999999999999 899875 5699999999
Q ss_pred cCCC
Q 012310 81 LGGK 84 (466)
Q Consensus 81 ~GGK 84 (466)
+||+
T Consensus 89 ~gg~ 92 (94)
T 2kan_A 89 INRA 92 (94)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9996
No 23
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.46 E-value=2.3e-13 Score=112.00 Aligned_cols=75 Identities=36% Similarity=0.504 Sum_probs=69.5
Q ss_pred CCCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeec
Q 012310 6 TSPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLL 81 (466)
Q Consensus 6 ~s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~ 81 (466)
+++..|+|+|++++|+++.+.|. ++.||.+||.+|++.+|||++.|+|+|+|+.|.|+.+|.+| +++|+|++||+
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCCCeEEEEEEeCCCCEEEEEEC-CCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 34678999999999999999997 89999999999999999999999999999999999999886 57999999985
No 24
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.43 E-value=1.1e-14 Score=137.23 Aligned_cols=73 Identities=26% Similarity=0.449 Sum_probs=1.1
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCCCceeEEeeecCCCc
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGGKG 85 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GGKG 85 (466)
|+|||++++|++++|.|. |++||.+||.+|++.+|||+++|+|+|+|++|.|+.+|+ .++||+|++||+||+-
T Consensus 1 MqI~VKtL~GktitLeV~-~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-~~STLhLvlRLrGG~~ 73 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLE-QGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-DDVTYYLSLKLLGGKK 73 (189)
T ss_dssp -------------------------------------------------------------------------CC
T ss_pred CEEEEEcCCCCEEEEEEC-CcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-CCCEEEEEEecCCCcc
Confidence 899999999999999997 899999999999999999999999999999999999998 8899999999999973
No 25
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.43 E-value=3.1e-13 Score=114.16 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=64.3
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEE
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLV 77 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~Lv 77 (466)
.+.+|+|||+++.|++++|.|. |++||.+||++|+++.|||+++|||+|+|++|.|..+|.+| +++|+|.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~-p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCL-GEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEE-TTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEEC-CcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 5789999999999999999998 99999999999999999999999999999999999999987 5688774
No 26
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.42 E-value=2.6e-13 Score=123.73 Aligned_cols=84 Identities=40% Similarity=0.526 Sum_probs=75.5
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecC
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLG 82 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~G 82 (466)
.+..|+|||++++|++++|.|. +++||.+||.+|++.+|||+++|+|+|+|++|.|+.+|.+| +++|+|+++++|
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 95 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CCCcEEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccc
Confidence 3578999999999999999997 89999999999999999999999999999999999999886 569999999999
Q ss_pred CCcccCcch
Q 012310 83 GKGGFGSLL 91 (466)
Q Consensus 83 GKGGFGS~L 91 (466)
|...|...+
T Consensus 96 g~~i~Vk~~ 104 (172)
T 3u30_A 96 GMQIFVKTL 104 (172)
T ss_dssp CEEEEEEES
T ss_pred cccceeecc
Confidence 987775443
No 27
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.42 E-value=3.2e-13 Score=115.61 Aligned_cols=76 Identities=21% Similarity=0.222 Sum_probs=71.2
Q ss_pred CCcEEEEEEeC---CCCEEEEEecCC-CCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEee
Q 012310 8 PKALQLFVKLL---NGKTTTLNFTTC-HVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLR 79 (466)
Q Consensus 8 ~~~MqIfVKtl---dGkT~tL~V~sP-s~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlR 79 (466)
+..|+|+|+++ +|+++++.|. + +.||.+||.+|+..+|||++.|+|+|+|++|.|+.+|.+| +++|+|++|
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~-~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQ-SLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEES-CSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CCcEEEEEEecccCCCcEEEEEec-CCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 46799999999 8999999997 7 9999999999999999999999999999999999999886 579999999
Q ss_pred ecCCC
Q 012310 80 LLGGK 84 (466)
Q Consensus 80 L~GGK 84 (466)
++|||
T Consensus 104 ~~GGk 108 (111)
T 1we6_A 104 ERSGP 108 (111)
T ss_dssp SCCSS
T ss_pred cCCCC
Confidence 99997
No 28
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=3.6e-13 Score=111.42 Aligned_cols=78 Identities=24% Similarity=0.247 Sum_probs=69.8
Q ss_pred CCCcEEEEEEeCCCC--EEEEEecCCCCCHHHHHHHHHHhh--CCCCCCeEEEecCeecCCCCccccC------CCceeE
Q 012310 7 SPKALQLFVKLLNGK--TTTLNFTTCHVYGHEIKNRIYEAT--KIPTHLQRLIYSGLQLKDRTVISDD------HITFNL 76 (466)
Q Consensus 7 s~~~MqIfVKtldGk--T~tL~V~sPs~TVsdLK~rI~e~~--GIP~e~QRLIfnGK~L~DsstLss~------gsTL~L 76 (466)
....|+|+|++++|+ +++|.+. ++.||.+||++|++.+ +||+++|||+|+|++|.|+.+|.+| +++|||
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~-~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~l 82 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGD-RGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHL 82 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECC-TTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEE
T ss_pred CCcEEEEEEEeCCCCeEEEEEecC-CCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEE
Confidence 356799999999998 6788886 7999999999999998 9999999999999999999888876 359999
Q ss_pred EeeecCCCc
Q 012310 77 VLRLLGGKG 85 (466)
Q Consensus 77 vlRL~GGKG 85 (466)
++|++||+.
T Consensus 83 v~~~~gg~~ 91 (93)
T 1wgd_A 83 VCNVKSGPS 91 (93)
T ss_dssp ECCCCCCCC
T ss_pred EeCCCCCCC
Confidence 999999974
No 29
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.42 E-value=2.1e-13 Score=113.41 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=66.3
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
+..|+|+|++ |+++++.|. ++.||.+||.+|++..+||++.|+|+|+|++|.|+.+|.+| +++|+|++|++||
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVT-GQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ---CEEEEES--SSEEEEECC-SSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCcEEEEEEC--CCEEEEEeC-CCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4579999998 899999997 89999999999999999999999999999999999998875 6799999999998
No 30
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.41 E-value=5.3e-13 Score=119.71 Aligned_cols=75 Identities=21% Similarity=0.318 Sum_probs=69.6
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
+..|+|+|++++|+++++.+. ++.||.+||.+|+...|||++.|+|+|+|++|.|+.+|.+| +++|+|++|++||
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVR-LTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEEC-TTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeC-CCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 568999999999999999997 89999999999999999999999999999999999999987 5799999999998
No 31
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.41 E-value=4.8e-13 Score=123.25 Aligned_cols=76 Identities=43% Similarity=0.624 Sum_probs=69.0
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCCcc
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGKGG 86 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGKGG 86 (466)
|+|+|++++|+++++.|. +++||.+||.+|++..|||+++|+|+|+|++|.|+.+|.+| +++|+|++|++||+..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGE 79 (169)
T ss_dssp CEEEEEETTSCEEEEECC-TTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---C
T ss_pred CEEEEEeCCCCEEEEEeC-CCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccccc
Confidence 899999999999999997 89999999999999999999999999999999999999886 5799999999999854
Q ss_pred c
Q 012310 87 F 87 (466)
Q Consensus 87 F 87 (466)
.
T Consensus 80 ~ 80 (169)
T 3l0w_B 80 T 80 (169)
T ss_dssp C
T ss_pred c
Confidence 4
No 32
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.41 E-value=8.7e-13 Score=113.05 Aligned_cols=75 Identities=44% Similarity=0.593 Sum_probs=69.7
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
...|+|+|++++|+++.+.|. ++.||.+||.+|++..+||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++||
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEEC-TTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeC-CCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 468999999999999999997 89999999999999999999999999999999999999886 6799999999997
No 33
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.41 E-value=7.3e-13 Score=107.90 Aligned_cols=72 Identities=32% Similarity=0.481 Sum_probs=66.4
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC---CCceeEEee
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD---HITFNLVLR 79 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~---gsTL~LvlR 79 (466)
.+..|+|+|++++|+++++.+. ++.||.+||.+|++.+|||++.|+|+|+|+.|.|+.+|.+| +++|||++|
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~g~~i~lv~R 88 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVG-AQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVER 88 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEE-TTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCTTEEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEEC-CCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCCCCcEEEEEEC
Confidence 3578999999999999999998 89999999999999999999999999999999999999886 568999876
No 34
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=103.48 Aligned_cols=74 Identities=30% Similarity=0.446 Sum_probs=68.4
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeec
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLL 81 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~ 81 (466)
++.+|+|+|++++|+++++.|. ++.||.+||.+|++..+||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~-~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVP-EDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEEC-SSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCCcEEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 5678999999999999999997 89999999999999999999999999999999999999886 57999998874
No 35
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=6e-13 Score=110.38 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=71.6
Q ss_pred CCCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeec
Q 012310 6 TSPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLL 81 (466)
Q Consensus 6 ~s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~ 81 (466)
.++..|+|+|+++ |+++++.|. ++.||.+||.+|++.++||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++
T Consensus 13 ~~~~~m~i~Vk~~-g~~~~~~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (96)
T 1wx8_A 13 PSSRIIRVSVKTP-QDCHEFFLA-ENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSH 90 (96)
T ss_dssp CCSCEEEEEEECS-SSEEEEEEE-TTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCS
T ss_pred CCCCcEEEEEEEC-CeEEEEEEC-CCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 3567899999998 999999998 89999999999999999999999999999999999998875 56999999999
Q ss_pred CCCc
Q 012310 82 GGKG 85 (466)
Q Consensus 82 GGKG 85 (466)
||+.
T Consensus 91 ~g~~ 94 (96)
T 1wx8_A 91 SGPS 94 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 9873
No 36
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.38 E-value=1.6e-12 Score=106.53 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=69.2
Q ss_pred CCCCCCCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCee-cCCCCccccC----CCceeE
Q 012310 2 EDQATSPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQ-LKDRTVISDD----HITFNL 76 (466)
Q Consensus 2 ~~~~~s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~-L~DsstLss~----gsTL~L 76 (466)
--.++-.+.|+|||++++|+++++.|+ ++.||.+||.+|++..|||+++|+|+|+|++ |.|+.+|.+| +++|+|
T Consensus 2 ~~~~~~~~~~~i~vk~l~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~l 80 (84)
T 2kk8_A 2 GHHHHHHSHMKFLVENLNGSSFELEVD-YRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQL 80 (84)
T ss_dssp CCCCCCCCCEEEEEEETTSCEEEEEEC-TTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEE
T ss_pred CccccccCceEEEEEecCCcEEEEEEC-CCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEE
Confidence 333556789999999999999999997 8999999999999999999999999999999 9999999875 568988
Q ss_pred Eee
Q 012310 77 VLR 79 (466)
Q Consensus 77 vlR 79 (466)
++|
T Consensus 81 v~~ 83 (84)
T 2kk8_A 81 EVS 83 (84)
T ss_dssp EEC
T ss_pred EEc
Confidence 876
No 37
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=1.7e-12 Score=103.08 Aligned_cols=71 Identities=27% Similarity=0.429 Sum_probs=65.5
Q ss_pred cEEEEEEeCCCCEE-EEE-ecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeec
Q 012310 10 ALQLFVKLLNGKTT-TLN-FTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLL 81 (466)
Q Consensus 10 ~MqIfVKtldGkT~-tL~-V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~ 81 (466)
.|+|+|++++|+++ ++. +. ++.||.+||.+|++..|||++.|+|+|+|++|.|+.+|.+| +++|+|++|++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~-~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLS-RLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCEEEEEeccC-CCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 69999999999985 998 97 89999999999999999999999999999999999999886 56999999863
No 38
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1.8e-12 Score=113.42 Aligned_cols=77 Identities=22% Similarity=0.344 Sum_probs=68.5
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHH------hhCC--CCCCeEEEecCeecCCCCccccCC------C
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYE------ATKI--PTHLQRLIYSGLQLKDRTVISDDH------I 72 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e------~~GI--P~e~QRLIfnGK~L~DsstLss~g------s 72 (466)
+...|+|+|++++|++++|.|. |++||.+||++|++ .+++ |+++|||||+|++|.|+.+|++|+ .
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~-~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~ 91 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFS-PNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT 91 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEEC-TTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEE
T ss_pred CCCeEEEEEEeCCCCEEEEEEC-CcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCce
Confidence 3567999999999999999998 89999999999998 5575 699999999999999999999875 4
Q ss_pred ceeEEeeecCCC
Q 012310 73 TFNLVLRLLGGK 84 (466)
Q Consensus 73 TL~LvlRL~GGK 84 (466)
||||++|+.+..
T Consensus 92 tlhLvlr~~~~~ 103 (116)
T 1wgh_A 92 VMHLVARETLPE 103 (116)
T ss_dssp EEEEEECSSCSS
T ss_pred EEEEEccCCCCC
Confidence 799999987554
No 39
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.03 E-value=9e-14 Score=109.82 Aligned_cols=71 Identities=14% Similarity=0.263 Sum_probs=67.0
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLG 82 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~G 82 (466)
|+|+|++++|+++++.+. ++.||.+||.+|+...|||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVD-SDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999997 89999999999999999999999999999999999999886 579999999986
No 40
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.34 E-value=2.2e-12 Score=108.94 Aligned_cols=77 Identities=23% Similarity=0.261 Sum_probs=70.7
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecC
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLG 82 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~G 82 (466)
.+..|+|+|++++|+ +++.|. ++.||.+||.+|++..+||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++|
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVT-DTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEE-TTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCCeEEEEEEcCCCc-EEEEEC-CCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 567899999999986 689998 89999999999999999999999999999999999999875 679999999999
Q ss_pred CCc
Q 012310 83 GKG 85 (466)
Q Consensus 83 GKG 85 (466)
|..
T Consensus 97 ~p~ 99 (100)
T 1yqb_A 97 RAM 99 (100)
T ss_dssp SCC
T ss_pred CCC
Confidence 875
No 41
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.33 E-value=3.8e-12 Score=112.97 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=68.4
Q ss_pred CCCcEEEEEEeCCCCEE-EEEecCCCCCHHHHHHHH-----HHhhCCCC--CCeEEEecCeecCCCCccccC----C---
Q 012310 7 SPKALQLFVKLLNGKTT-TLNFTTCHVYGHEIKNRI-----YEATKIPT--HLQRLIYSGLQLKDRTVISDD----H--- 71 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~-tL~V~sPs~TVsdLK~rI-----~e~~GIP~--e~QRLIfnGK~L~DsstLss~----g--- 71 (466)
....|+|+|++++|+.+ .+.++ |++||.+||++| ++..+||+ ++|||||+|++|.|+.+|++| +
T Consensus 13 ~~~~~~i~~kt~~G~~i~~l~v~-psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~ 91 (126)
T 1se9_A 13 VHNQLEIKFRLTDGSDIGPKAFP-DATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA 91 (126)
T ss_dssp SCCCEEEEEEETTSCEEEEEEEC-TTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCT
T ss_pred hcccEEEEEEECCCCEEEeeecC-ccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCcc
Confidence 35689999999999987 79998 899999999999 45678997 799999999999999999986 3
Q ss_pred ---CceeEEeeecCCC
Q 012310 72 ---ITFNLVLRLLGGK 84 (466)
Q Consensus 72 ---sTL~LvlRL~GGK 84 (466)
.|+||++|++||+
T Consensus 92 ~~v~tmhlVlrl~g~~ 107 (126)
T 1se9_A 92 GAVTTMHVIIQAPVTE 107 (126)
T ss_dssp TCCEEEEEEECCCSSC
T ss_pred CCcEEEEEEeccCCcc
Confidence 5799999999885
No 42
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.33 E-value=3.1e-12 Score=113.17 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=69.6
Q ss_pred CCCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHH------hhCCC--CCCeEEEecCeecCCCCccccCC----C-
Q 012310 6 TSPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYE------ATKIP--THLQRLIYSGLQLKDRTVISDDH----I- 72 (466)
Q Consensus 6 ~s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e------~~GIP--~e~QRLIfnGK~L~DsstLss~g----s- 72 (466)
+..+.|+|+|++++|++++|.|. |++||.+||++|+. .+++| +++|||||+|++|.|+.+|++|+ +
T Consensus 13 ~~~~~m~I~vktl~G~~~~lev~-~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~ 91 (125)
T 2gow_A 13 VPADMINLRLILVSGKTKEFLFS-PNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT 91 (125)
T ss_dssp CCTTCEEEEEECTTSCEEEEEEC-TTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSE
T ss_pred CCCCeEEEEEEeCCCCEEEEEeC-CccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCc
Confidence 34677999999999999999998 89999999999998 67885 89999999999999999999874 3
Q ss_pred -ceeEEeeecCCC
Q 012310 73 -TFNLVLRLLGGK 84 (466)
Q Consensus 73 -TL~LvlRL~GGK 84 (466)
||+|++|++++.
T Consensus 92 ~tlhlv~r~~~~~ 104 (125)
T 2gow_A 92 TVMHLVARETLPE 104 (125)
T ss_dssp EEEEEEECSCCSS
T ss_pred eEEEEEecCCCCc
Confidence 799999998764
No 43
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.33 E-value=2.3e-12 Score=115.54 Aligned_cols=104 Identities=22% Similarity=0.235 Sum_probs=85.4
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEE-e-cCeecCCCCccccC----CCceeEEee-ecC
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLI-Y-SGLQLKDRTVISDD----HITFNLVLR-LLG 82 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLI-f-nGK~L~DsstLss~----gsTL~LvlR-L~G 82 (466)
.|+|+|++++|+++++.|. +++||.+||.+|+..+|||+++|+|+ | +|++|.|+.+|.+| +++|+|+++ +++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~ 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLS-SSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECC-TTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC
T ss_pred ceEEEEEECCCCEEEEEeC-CCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC
Confidence 4999999999999999997 89999999999999999999999999 9 89999999999986 679999999 577
Q ss_pred CCcccCcchhhhhhhhccccccCcccccccCCCcc-cccchHHHHHHHHHHHHH
Q 012310 83 GKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRL-RHVNAEKKLEEWKAEEEE 135 (466)
Q Consensus 83 GKGGFGS~LRa~g~r~~~kKt~n~daCRdL~GRRl-r~Vn~ek~l~e~~~~~~~ 135 (466)
+...|... ++|+.+ .+|.+...+.+.+++.++
T Consensus 81 ~m~i~vk~---------------------~~g~~~~~~v~~~~tV~~lK~~i~~ 113 (159)
T 3rt3_B 81 PLSILVRN---------------------NKGRSSTYEVRLTQTVAHLKQQVSG 113 (159)
T ss_dssp CEEEEEEC---------------------TTSCEEEEEECTTSBHHHHHHHHHH
T ss_pred cEEEEEEC---------------------CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 76555433 333332 367777777777766543
No 44
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.32 E-value=2.2e-12 Score=110.31 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=63.9
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEE
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLV 77 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~Lv 77 (466)
..+|+|||+++.|++++|.|. |++||.+||.+|+++.|||+++|||+|+|++|.|+.+|.+| +++|+|+
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~-p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCN-TDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEE-TTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeC-CCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 456999999999999999998 89999999999999999999999999999999999999886 4688876
No 45
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.32 E-value=6.2e-12 Score=101.20 Aligned_cols=72 Identities=24% Similarity=0.286 Sum_probs=65.1
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHh---hCCCCCCeEEEecCeecCCCCccccC----CCceeEEeee
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEA---TKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRL 80 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~---~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL 80 (466)
+..|+|+|++++|+++++.|. ++.||.+||.+|+.. .|||++.|+|+|+|+.|.|+.+|.+| +++|+|+++.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~-~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRME-PDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEEC-TTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEEC-CCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 678999999999999999997 899999999999997 89999999999999999999999886 5688888764
No 46
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=9.2e-12 Score=109.53 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=65.6
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
...|+|+|+++ |++++|.|. ++.||.+||.+|+..++||++.|+|+|+|+.|.|+.+|.+| +++|+|+++++||
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVP-ENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEEC-TTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred CCcEEEEEEeC-CeEEEEEEC-CCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 46799999999 999999997 89999999999999999999999999999999999999886 5699999999998
Q ss_pred Cc
Q 012310 84 KG 85 (466)
Q Consensus 84 KG 85 (466)
+.
T Consensus 108 ~~ 109 (125)
T 1j8c_A 108 SS 109 (125)
T ss_dssp --
T ss_pred CC
Confidence 74
No 47
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.31 E-value=4.5e-12 Score=109.26 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=69.1
Q ss_pred CCcEEEEEEeC----------CCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCc
Q 012310 8 PKALQLFVKLL----------NGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HIT 73 (466)
Q Consensus 8 ~~~MqIfVKtl----------dGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsT 73 (466)
+..|+|+|+.+ +|+++++.|. ++.||.+||.+|+...|||++.|+|+|+|+.|.|+.+|.+| +++
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAV 101 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEEC-SCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEEC-CCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCE
Confidence 45788999876 4789999997 89999999999999999999999999999999999998875 679
Q ss_pred eeEEeeecCCC
Q 012310 74 FNLVLRLLGGK 84 (466)
Q Consensus 74 L~LvlRL~GGK 84 (466)
|+|++|++|||
T Consensus 102 i~lv~rl~GGk 112 (115)
T 1we7_A 102 IHLALKERSGP 112 (115)
T ss_dssp EEEEECCCSCC
T ss_pred EEEEEEcCCCC
Confidence 99999999997
No 48
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.30 E-value=4.4e-12 Score=115.61 Aligned_cols=75 Identities=43% Similarity=0.595 Sum_probs=65.9
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
...|+|+|++++|+++++.+. ++.||.+||.+|+..+|||++.|+|+|+|++|.|+.+|.+| +++|+|++||+||
T Consensus 94 ~gg~~i~Vk~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 94 RGGMQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CCCEEEEEEESSCCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cccccceeecccCcceeEEec-CCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 457999999999999999997 89999999999999999999999999999999999999886 5799999999997
No 49
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=7.7e-12 Score=106.06 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=70.2
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
+..|+|+|+++.|+ +.|.|. ++.||.+||.+|++.++||++.|+|+|+|+.|.|+.+|.+| +++|+|++|+.||
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVT-DTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEE-TTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CceEEEEEEeCCCc-EEEEEC-CCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 56799999999886 789997 79999999999999999999999999999999999898875 5699999999999
Q ss_pred Ccc
Q 012310 84 KGG 86 (466)
Q Consensus 84 KGG 86 (466)
+.+
T Consensus 93 ~~~ 95 (106)
T 1wx7_A 93 AMG 95 (106)
T ss_dssp SCC
T ss_pred CCC
Confidence 853
No 50
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.27 E-value=1.4e-11 Score=108.35 Aligned_cols=75 Identities=43% Similarity=0.595 Sum_probs=69.4
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
+..|+|+|++++|+++.+.+. ++.||.+||.+|+...|||++.|+|+|+|+.|.|+.+|.+| +++|+|++|++||
T Consensus 74 ~~~~~i~Vk~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 74 RGGMQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp TTCEEEEEEESSSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred ccccceeeeecCCCEEEEEeC-CCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 346999999999999999997 89999999999999999999999999999999999999886 5799999999998
No 51
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.27 E-value=4.2e-12 Score=105.46 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=61.2
Q ss_pred cEEEEEEeCCCCEEEEEec-CCCCCHHHHHHHH-HHhhCCCCCCeEEEecCeecCCCCccccCC-----CceeEEee
Q 012310 10 ALQLFVKLLNGKTTTLNFT-TCHVYGHEIKNRI-YEATKIPTHLQRLIYSGLQLKDRTVISDDH-----ITFNLVLR 79 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~-sPs~TVsdLK~rI-~e~~GIP~e~QRLIfnGK~L~DsstLss~g-----sTL~LvlR 79 (466)
+|+||||++.|++++|.+. .|++||.+||++| ++..|||+++|||+|+|++|.|+.+|++|+ ++|+|+++
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEEC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcC
Confidence 4999999999998888743 2799999999999 999999999999999999999999998864 46777664
No 52
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.27 E-value=4.1e-13 Score=122.29 Aligned_cols=73 Identities=44% Similarity=0.633 Sum_probs=0.0
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGK 84 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGK 84 (466)
|+|+|++++|++++|.|+ +++||.+||.+|++.+|||+++|+|+|+|++|.|+.+|.+| +++|+|++|++||.
T Consensus 1 MqI~VK~l~G~~~~l~V~-~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEEC-CCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 899999999999999997 89999999999999999999999999999999999999886 57999999999983
No 53
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.27 E-value=6.4e-12 Score=107.08 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=63.9
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeec
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLL 81 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~ 81 (466)
+|+|+|++++|++++|.|. ++.||.+||.+|+...|||++.|+|+|+|++|.|+.+|.+| +++|+|+++..
T Consensus 1 mm~I~Vk~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLE-PSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp --CEEEECTTCCEEEECCC-TTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred CEEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 4899999999999999997 89999999999999999999999999999999999999887 56899988753
No 54
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=1.1e-11 Score=105.38 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=68.2
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
...|+|+|++++|+++++.|. ++.||.+||.+|+...|||++.|+|+|+|++|.|+.+|.+| +++|+|+++...+
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVR-STDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEEC-TTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CCeEEEEEEcCCCCEEEEEeC-CCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 457999999999999999997 89999999999999999999999999999999999999876 5799999886543
No 55
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.26 E-value=4.8e-12 Score=108.92 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=68.0
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCC---------------CCeEEEecCeecC-CCCccccC
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPT---------------HLQRLIYSGLQLK-DRTVISDD 70 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~---------------e~QRLIfnGK~L~-DsstLss~ 70 (466)
....|+|+|++++|++++|.|. |+.||.+||.+|++..++|+ .+|+|+|+|++|. |+.+|.+|
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~-~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy 82 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVV-QNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY 82 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEEC-TTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred CCCcEEEEEEecCCCEEEEEEC-CCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc
Confidence 4567999999999999999998 89999999999999999987 4679999999996 56889886
Q ss_pred ----CCceeEEeeecCC
Q 012310 71 ----HITFNLVLRLLGG 83 (466)
Q Consensus 71 ----gsTL~LvlRL~GG 83 (466)
+++|+|++||+|.
T Consensus 83 gI~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 83 GIRNRDEVSFIKKLGQK 99 (105)
T ss_dssp TCCSSEEEEEEECSCSC
T ss_pred CCCCCCEEEEEehhccC
Confidence 5799999999875
No 56
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.26 E-value=9.1e-12 Score=109.55 Aligned_cols=102 Identities=38% Similarity=0.518 Sum_probs=83.9
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCCcc
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGKGG 86 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGKGG 86 (466)
|+|+|++++|+++++.|. ++.||.+||.+|++..|+|++.|+|+|+|+.|.|+.+|.+| +++|+|+.+++||...
T Consensus 1 M~i~vk~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i 79 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQI 79 (152)
T ss_dssp CEEEEEETTSCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEE
T ss_pred CEEEEEeCCCCEEEEEEC-CCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccce
Confidence 899999999999999997 89999999999999999999999999999999999999886 5799999999888655
Q ss_pred cCcchhhhhhhhccccccCcccccccCCCc-ccccchHHHHHHHHHHHH
Q 012310 87 FGSLLRGAATKAGQKKTNNFDACRDMSGRR-LRHVNAEKKLEEWKAEEE 134 (466)
Q Consensus 87 FGS~LRa~g~r~~~kKt~n~daCRdL~GRR-lr~Vn~ek~l~e~~~~~~ 134 (466)
|...+ +|+. -.+|+....+.++++..+
T Consensus 80 ~Vk~~---------------------~g~~~~~~v~~~~tv~~lK~~i~ 107 (152)
T 3b08_A 80 FVKTL---------------------TGKTITLEVEPSDTIENVKAKIQ 107 (152)
T ss_dssp EEEES---------------------SSCEEEEEECTTCBHHHHHHHHH
T ss_pred eeeec---------------------CCCEEEEEeCCCCcHHHHHHHHH
Confidence 54333 2322 235666667777765543
No 57
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.25 E-value=1.6e-11 Score=104.19 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=62.3
Q ss_pred CCCCcEEEEEEeCCCCEEEE--EecCCCCCHHHHHHHH-HHhhCCCCCCeEEEecCeecCCCCccccCC-----CceeEE
Q 012310 6 TSPKALQLFVKLLNGKTTTL--NFTTCHVYGHEIKNRI-YEATKIPTHLQRLIYSGLQLKDRTVISDDH-----ITFNLV 77 (466)
Q Consensus 6 ~s~~~MqIfVKtldGkT~tL--~V~sPs~TVsdLK~rI-~e~~GIP~e~QRLIfnGK~L~DsstLss~g-----sTL~Lv 77 (466)
..+.+|+|+|+++.|+++++ .|. ++.||.+||++| ++..|+|+++|||+|+|++|.|+.+|++|+ ++|+|+
T Consensus 15 ~~~~~m~I~VKtl~g~~~~i~v~v~-~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 15 MDNAAVHLTLKKIQAPKFSIEHDFS-PSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVM 93 (98)
T ss_dssp ---CCEEEEEEECSSSCEEEEEEEC-TTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEEecC-CCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEE
Confidence 35678999999999997776 555 799999999999 888899999999999999999999998874 378887
Q ss_pred ee
Q 012310 78 LR 79 (466)
Q Consensus 78 lR 79 (466)
++
T Consensus 94 vs 95 (98)
T 4a20_A 94 IK 95 (98)
T ss_dssp EC
T ss_pred Ee
Confidence 75
No 58
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.25 E-value=1.6e-11 Score=96.71 Aligned_cols=69 Identities=29% Similarity=0.328 Sum_probs=63.2
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEee
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLR 79 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlR 79 (466)
+.|+|+|++ +|+++++.++ ++.||.+||.+|+...|||++.|+|+|+|+.|.|+.+|.+| +++|+|+.+
T Consensus 3 M~m~i~vk~-~g~~~~~~v~-~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 3 MSLNIHIKS-GQDKWEVNVA-PESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEEEE-TTEEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred eEEEEEEEE-CCEEEEEEEC-CCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 569999999 9999999997 89999999999999999999999999999999999999886 568888764
No 59
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.25 E-value=2.5e-11 Score=100.97 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=66.2
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHh---hCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeec-C
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEA---TKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLL-G 82 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~---~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~-G 82 (466)
|+|+|++++|+++++.|. ++.||.+||.+|+.. .|||++.|+|+|+|+.|.|+.+|.+| +++|+|+++.+ +
T Consensus 1 M~I~Vk~~~g~~~~~~v~-~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~ 79 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDID-PEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKA 79 (95)
T ss_dssp CEEEEEETTCCEEEEECC-TTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCC
T ss_pred CEEEEEeCCCCEEEEEEC-CCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCC
Confidence 899999999999999997 899999999999998 78999999999999999999999886 56899988754 4
Q ss_pred CCc
Q 012310 83 GKG 85 (466)
Q Consensus 83 GKG 85 (466)
++.
T Consensus 80 ~~~ 82 (95)
T 1uel_A 80 VST 82 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 60
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.24 E-value=1e-11 Score=108.99 Aligned_cols=74 Identities=22% Similarity=0.221 Sum_probs=62.6
Q ss_pred EEEEEEeCCCC-EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC-----------CCceeEEe
Q 012310 11 LQLFVKLLNGK-TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD-----------HITFNLVL 78 (466)
Q Consensus 11 MqIfVKtldGk-T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~-----------gsTL~Lvl 78 (466)
|+|||+...|+ +++|.|. ++.||.+||.+|+..+|||+++|||+|+|++|.|+.+|++| ++||+|++
T Consensus 1 M~mfl~ir~~ktti~lev~-~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAK-ESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEE-TTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeC-CcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEe
Confidence 45566555576 5899998 89999999999999999999999999999999999998864 46899999
Q ss_pred eecCCCcccC
Q 012310 79 RLLGGKGGFG 88 (466)
Q Consensus 79 RL~GGKGGFG 88 (466)
| .|| .|-
T Consensus 80 r-~~g--~fe 86 (118)
T 2fnj_B 80 R-ADD--TFE 86 (118)
T ss_dssp B-SSS--CBC
T ss_pred c-CCC--cee
Confidence 9 555 453
No 61
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.23 E-value=1.6e-11 Score=103.70 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=68.6
Q ss_pred CCCcEEEEEEeCCC----CEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC-CccccC----CCceeEE
Q 012310 7 SPKALQLFVKLLNG----KTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR-TVISDD----HITFNLV 77 (466)
Q Consensus 7 s~~~MqIfVKtldG----kT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds-stLss~----gsTL~Lv 77 (466)
....|+|+|+++.| +++++.|. ++.||.+||.+|+..++||+++|+|+|+|++|.|+ .+|.+| +++|+|+
T Consensus 4 ~~~~m~I~Vk~~~~~~~~~~~~i~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~ 82 (102)
T 1v5o_A 4 GSSGMLITVYCVRRDLTEVTFSLQVN-PDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLL 82 (102)
T ss_dssp CSCCEEEEEEECCCCCCCCEEEEEEC-TTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEEC
T ss_pred CCCeEEEEEEECCCCcCceEEEEEcC-CCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEE
Confidence 35679999999755 79999997 89999999999999999999999999999999887 578875 5699999
Q ss_pred eeecCCC
Q 012310 78 LRLLGGK 84 (466)
Q Consensus 78 lRL~GGK 84 (466)
.+++||-
T Consensus 83 ~~~~gg~ 89 (102)
T 1v5o_A 83 QKDNVGL 89 (102)
T ss_dssp BCCCCCC
T ss_pred ECCCCCC
Confidence 9999885
No 62
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.21 E-value=1.7e-11 Score=104.01 Aligned_cols=72 Identities=26% Similarity=0.293 Sum_probs=58.3
Q ss_pred CCCCCcEEEEEEeCCCC--EEEEEecCCCCCHHHHHHHHHHh-hCCC-CCCeEEEecCeecCCCCccccC--C----Cce
Q 012310 5 ATSPKALQLFVKLLNGK--TTTLNFTTCHVYGHEIKNRIYEA-TKIP-THLQRLIYSGLQLKDRTVISDD--H----ITF 74 (466)
Q Consensus 5 ~~s~~~MqIfVKtldGk--T~tL~V~sPs~TVsdLK~rI~e~-~GIP-~e~QRLIfnGK~L~DsstLss~--g----sTL 74 (466)
..++..|+|+|++++|+ +++|.++ |++||.+||++|++. .|+| +++|||+|+|++|.|+.+|.+| + ++|
T Consensus 18 ~~~~~~m~I~VK~~~g~~~~i~l~v~-~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 18 YFQGHPVTLIIKAPNQKYSDQTISCF-LNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMV 96 (99)
T ss_dssp -----CEEEEEECTTSSSCCEEEEEC-TTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEE
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEEcC-CCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEE
Confidence 34567899999999998 6789997 899999999999986 5666 5999999999999999999877 3 467
Q ss_pred eEE
Q 012310 75 NLV 77 (466)
Q Consensus 75 ~Lv 77 (466)
+|+
T Consensus 97 hLv 99 (99)
T 2kdb_A 97 HLV 99 (99)
T ss_dssp EEC
T ss_pred EeC
Confidence 664
No 63
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.20 E-value=6.2e-11 Score=100.10 Aligned_cols=73 Identities=25% Similarity=0.320 Sum_probs=67.1
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLG 82 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~G 82 (466)
+..|+|+|+++ |+++++.|. ++.||.+||.+|+...|||++.|+|+|+|+.|.|+.+|.+| +++|+|+++++.
T Consensus 23 ~~~m~I~Vk~~-g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 23 PKIMKVTVKTP-KEKEEFAVP-ENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCCEEEEEECS-SCEEEEEEC-SCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCeEEEEEEeC-CcEEEEEEC-CCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 56899999998 999999997 89999999999999999999999999999999999999886 568999998764
No 64
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.19 E-value=3.8e-11 Score=105.46 Aligned_cols=75 Identities=21% Similarity=0.223 Sum_probs=66.2
Q ss_pred EEEEEEeCCCC-EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC-----------CCceeEEe
Q 012310 11 LQLFVKLLNGK-TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD-----------HITFNLVL 78 (466)
Q Consensus 11 MqIfVKtldGk-T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~-----------gsTL~Lvl 78 (466)
|.|||+...++ ++++.+. |+.||.+||.+|+..+|||+++|||+|+|++|.|+.+|++| ++||+|++
T Consensus 1 m~vFl~Ikr~ktTI~ldve-~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAK-ESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEE-TTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred CceEEEEecCCEEEEEEcC-CCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 67888887777 7899998 89999999999999999999999999999999999999886 35899999
Q ss_pred eecCCCcccCc
Q 012310 79 RLLGGKGGFGS 89 (466)
Q Consensus 79 RL~GGKGGFGS 89 (466)
|+ | |.|..
T Consensus 80 r~-~--~~fE~ 87 (118)
T 4ajy_B 80 RA-D--DTFEA 87 (118)
T ss_dssp CC-S--SCCCC
T ss_pred ec-C--CCccc
Confidence 97 4 46654
No 65
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.16 E-value=4.6e-11 Score=102.10 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=61.2
Q ss_pred EEEEEeCC----CCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 12 QLFVKLLN----GKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 12 qIfVKtld----GkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
.|.|+..+ |++++|.|. |+.||.+||.+|++.+|||+++|+|||+|++|.|+.+|.+| +++| ++++|+|.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~-~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETR-LHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEE-SSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeC-CcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 44455555 778999998 89999999999999999999999999999999999999986 5688 88888765
No 66
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.10 E-value=2.2e-10 Score=94.78 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=65.8
Q ss_pred CCCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC-CccccC----CCceeEEeee
Q 012310 6 TSPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR-TVISDD----HITFNLVLRL 80 (466)
Q Consensus 6 ~s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds-stLss~----gsTL~LvlRL 80 (466)
++...|+|+|++++|+++.+.|. ++.||.+||.+|+... +++|+|+|+|++|.|+ .+|.+| +++|+|+++.
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~~v~-~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTEELAVAR-PEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp CCCCSEEEEEEETTTEEEEEEEC-SSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CCCCeEEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 35678999999999999999997 8999999999999887 8899999999999998 899886 5689999887
Q ss_pred cCC
Q 012310 81 LGG 83 (466)
Q Consensus 81 ~GG 83 (466)
++.
T Consensus 79 ~~~ 81 (95)
T 1wia_A 79 PGA 81 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 67
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.09 E-value=2.7e-10 Score=95.78 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=70.2
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecC
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLG 82 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~G 82 (466)
.+..|+|+|++.+|+.+.+.+. +++++..|+..++++.|||+.++||+|+|++|.++.++.++ +++|++++++.|
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~-~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIK-RHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEE-TTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEE
T ss_pred CCCeEEEEEECCCCCEEEEEEC-CCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 3568999999999999999998 89999999999999999999999999999999999888874 689999999999
Q ss_pred C
Q 012310 83 G 83 (466)
Q Consensus 83 G 83 (466)
|
T Consensus 83 G 83 (94)
T 2io1_B 83 G 83 (94)
T ss_dssp S
T ss_pred C
Confidence 9
No 68
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.01 E-value=9.2e-10 Score=94.83 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=63.9
Q ss_pred CCcEEEEEEeCCC--CEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC-----CCceeEEee
Q 012310 8 PKALQLFVKLLNG--KTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD-----HITFNLVLR 79 (466)
Q Consensus 8 ~~~MqIfVKtldG--kT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~-----gsTL~LvlR 79 (466)
+..|+|+|+.+.+ .+++|.+. |++||.+||++|++.+|||++.|||+|+|+++.|+.+|.+| ++++||++-
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~-ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVR-PDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred cEEEEEEEEccCCCCceEEEEEC-CcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 4579999999985 68999998 99999999999999999999999999999999999998876 458999874
No 69
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.01 E-value=5.1e-10 Score=95.32 Aligned_cols=74 Identities=22% Similarity=0.194 Sum_probs=64.5
Q ss_pred CCcEEEEEEeCCC---CEEEEEecC-------C-CCCHHHHHHHHHHhh--CCCCCC-eEEEecCeecCCCCccccC---
Q 012310 8 PKALQLFVKLLNG---KTTTLNFTT-------C-HVYGHEIKNRIYEAT--KIPTHL-QRLIYSGLQLKDRTVISDD--- 70 (466)
Q Consensus 8 ~~~MqIfVKtldG---kT~tL~V~s-------P-s~TVsdLK~rI~e~~--GIP~e~-QRLIfnGK~L~DsstLss~--- 70 (466)
...|+|+|++++| ++++|.|+. + +.||.+||.+|+..+ +||++. |+|+|+|+.|.|+.+|.+|
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 4579999999999 889999641 3 499999999999999 999999 9999999999999999875
Q ss_pred -CCceeEEeeec
Q 012310 71 -HITFNLVLRLL 81 (466)
Q Consensus 71 -gsTL~LvlRL~ 81 (466)
+++|+|+++..
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 56899988764
No 70
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.00 E-value=7.3e-10 Score=111.27 Aligned_cols=74 Identities=41% Similarity=0.543 Sum_probs=66.6
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeec
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLL 81 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~ 81 (466)
.+..|+|+|++++|++++|.|. ++.||.+||.+|++..+||+++|+|+|+|++|.|+.+|.+| +++|+|++||+
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~-~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCCeEEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 4678999999999999999997 89999999999999999999999999999999999999886 56999999975
No 71
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.00 E-value=4.3e-10 Score=92.86 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=61.7
Q ss_pred CCCcEEEEEEeCCCCEEEE-EecCCCCCHHHHHHHHHHhhCCCCCCeEEE---ecCeecCCCCccccC----CCceeEEe
Q 012310 7 SPKALQLFVKLLNGKTTTL-NFTTCHVYGHEIKNRIYEATKIPTHLQRLI---YSGLQLKDRTVISDD----HITFNLVL 78 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL-~V~sPs~TVsdLK~rI~e~~GIP~e~QRLI---fnGK~L~DsstLss~----gsTL~Lvl 78 (466)
...+|+|+|+. .|++++| .++ ++.||.+||.+|++.+|||+++|+|+ |+|++|.|+.+|.+| +++|+|+.
T Consensus 4 ~~~~m~i~Vk~-~g~~~~i~~v~-~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 4 GSSGLPIIVKW-GGQEYSVTTLS-EDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp CCCSCCEEEEE-TTEEEEECSCC-SSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred CCceEEEEEEE-CCEEEEEEEeC-CCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence 45679999996 7999999 887 89999999999999999999999999 999999999888875 45776653
No 72
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.00 E-value=6.9e-10 Score=93.07 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=60.5
Q ss_pred CCCcEEEEEEeCCCCEE-EEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEe
Q 012310 7 SPKALQLFVKLLNGKTT-TLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVL 78 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~-tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~Lvl 78 (466)
...+|+|+|+. .|+++ .|.++ ++.||.+||.+|++.+|||+++|+|+|+|++|.|+ +|.+| +++|+|+.
T Consensus 4 ~~~~m~i~Vk~-~g~~~~~l~v~-~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~ 77 (96)
T 1wgg_A 4 GSSGYSVTVKW-GKEKFEGVELN-TDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG 77 (96)
T ss_dssp CCCEEEEEEEE-TTEEEEEEEEE-SSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred CCcEEEEEEEE-CCEEEEEEEEC-CCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence 35689999995 78999 59998 89999999999999999999999999999999998 98886 45666643
No 73
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.99 E-value=2.1e-10 Score=97.05 Aligned_cols=70 Identities=29% Similarity=0.325 Sum_probs=61.3
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEee
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLR 79 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlR 79 (466)
.+.|+|+|++ .|+++.+.|. ++.||.+||.+|+..+|||++.|+|+|+|+.|.|+.+|.+| +++|+|+.+
T Consensus 26 ~m~i~I~Vk~-~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKWEVNVA-PESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp ---CCEEEEC-SSCCCCBCCC-TTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred CcEEEEEEEE-CCEEEEEEeC-CCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 4568899998 8999999997 89999999999999999999999999999999999999886 468888764
No 74
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.99 E-value=1.2e-09 Score=89.98 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=61.1
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCC-----CCHHHHHHHHHHhhCCCCCCeEEEecCeecCC-CCccccC----CCceeE
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCH-----VYGHEIKNRIYEATKIPTHLQRLIYSGLQLKD-RTVISDD----HITFNL 76 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs-----~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~D-sstLss~----gsTL~L 76 (466)
...+|+|+|++ .|+++.+.|+ +. .||.+||.+|++.+|||++.|+|+|+|+.|.| +.+|.+| +++|+|
T Consensus 4 ~~~~~~v~Vk~-~~~~~~i~v~-~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l 81 (92)
T 1wxv_A 4 GSSGLTVTVTH-SNEKHDLHVT-SQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVML 81 (92)
T ss_dssp CCSSEEEEEEC-SSSEEEEEEC-CCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEEC-CCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEE
Confidence 45689999998 5899999997 64 99999999999999999999999999999998 5578775 457877
Q ss_pred Eee
Q 012310 77 VLR 79 (466)
Q Consensus 77 vlR 79 (466)
+.+
T Consensus 82 ~~~ 84 (92)
T 1wxv_A 82 IGK 84 (92)
T ss_dssp ESC
T ss_pred Eec
Confidence 654
No 75
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.96 E-value=2.2e-09 Score=87.79 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=61.0
Q ss_pred CCCCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEe
Q 012310 5 ATSPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVL 78 (466)
Q Consensus 5 ~~s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~Lvl 78 (466)
+++..++.+.+ +++|+++.+.|+ ++.||.+||.+|+..+|||++.|+|+|+|++|.|+.+|.+| +++|+|+.
T Consensus 7 ~~~~~~~~~~~-~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 7 HHSHSTIKLTV-KFGGKSIPLSVS-PDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp GCSCCCEEEEE-EETTEEEEEEEC-TTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred cccCCcEEEEE-EECCEEEEEEEC-CCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 34566666544 568999999997 89999999999999999999999999999999999999886 45776654
No 76
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=8.5e-10 Score=94.00 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=63.2
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecCCCCccccC----CCceeEEeeec
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLKDRTVISDD----HITFNLVLRLL 81 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~DsstLss~----gsTL~LvlRL~ 81 (466)
+..|++|+..+.|++++|.|+ +++||.+||++|++++|||+++|+|++ .|+ |.|+.+|++| +++|+|+++-.
T Consensus 6 ~~~m~~~~vk~~Gk~~~v~v~-~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 6 SGRMLDFRVEYRDRNVDVVLE-DTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CCCEEEEEEECSSCEEEEEEE-TTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred CcceEEEEEEeCCeEEEEEEC-CCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 346999999999999999998 899999999999999999999999996 666 8888888875 56899988643
No 77
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.93 E-value=1.1e-09 Score=91.58 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=59.6
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEe
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVL 78 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~Lvl 78 (466)
..+.|+|+|+ ..|+++.|.|+ ++.||.+||++|+..++||+++|+|+|.|++| ++.+|.+| +++|+|+.
T Consensus 14 ~~~~~~i~Vk-~~g~~~~i~v~-~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~ 86 (95)
T 1v86_A 14 GKELVDLKII-WNKTKHDVKVP-LDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVG 86 (95)
T ss_dssp CCCCEEEEEE-ETTEEEEEEEC-TTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECC
T ss_pred CCceEEEEEE-ECCEEEEEEEC-CCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEe
Confidence 4578999999 57999999997 89999999999999999999999999999999 44588775 45777754
No 78
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.92 E-value=4e-09 Score=88.30 Aligned_cols=75 Identities=13% Similarity=0.192 Sum_probs=67.2
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
+..|+|.|++.+|+.+.+.+. +++++..|+..++++.|||+..+||+|+|++|.++.++.++ +++|++++++.||
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~-~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIK-RHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEE-TTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEc-cCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 568999999999999999998 89999999999999999999999999999999999888774 6799999999987
No 79
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=2.3e-09 Score=88.83 Aligned_cols=66 Identities=21% Similarity=0.152 Sum_probs=57.0
Q ss_pred CCCCCcEEEEEEeCCCCEE--EE-EecCCCCCHHHHHHHHHHh-hCCCCCCeEEEec--CeecCCCCccccCC
Q 012310 5 ATSPKALQLFVKLLNGKTT--TL-NFTTCHVYGHEIKNRIYEA-TKIPTHLQRLIYS--GLQLKDRTVISDDH 71 (466)
Q Consensus 5 ~~s~~~MqIfVKtldGkT~--tL-~V~sPs~TVsdLK~rI~e~-~GIP~e~QRLIfn--GK~L~DsstLss~g 71 (466)
++....|+|+|+++.|+.+ +| .|+ |+.||.+||++|++. .+||+++|||+|. |++|.|+.+|.+|+
T Consensus 5 ~~~~~~M~I~Vk~~~g~~~~~~l~~v~-~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~ 76 (88)
T 2dzj_A 5 SSGMKHYEVEILDAKTREKLCFLDKVE-PHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLP 76 (88)
T ss_dssp CCCCCCEEEEEEESSSCCCCEEEEEEC-SSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSS
T ss_pred CCceEEEEEEEECCCCCEEeeEEeEcC-CCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcC
Confidence 3445569999999998764 57 887 899999999999994 8999999999976 99999999999874
No 80
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.91 E-value=1.4e-09 Score=111.70 Aligned_cols=77 Identities=25% Similarity=0.311 Sum_probs=69.0
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHH---hhCCCCCCeEEEecCeecCCCCccccC----CCce-eEEee
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYE---ATKIPTHLQRLIYSGLQLKDRTVISDD----HITF-NLVLR 79 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e---~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL-~LvlR 79 (466)
...|+|+||+++|++++|.|. ++.||.+||.+|+. ..|||++.|+|+|+|++|.|+.+|.+| +++| +|+.|
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~-~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRME-PDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCC-TTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred CceEEEEEEeCCCCEEEEEeC-CCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 457999999999999999997 89999999999999 577999999999999999999999887 4567 88889
Q ss_pred ecCCCc
Q 012310 80 LLGGKG 85 (466)
Q Consensus 80 L~GGKG 85 (466)
+.||+.
T Consensus 84 ~~~~~~ 89 (368)
T 1oqy_A 84 TKAGQG 89 (368)
T ss_dssp CCSSSC
T ss_pred CCCCCC
Confidence 988874
No 81
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.91 E-value=5.8e-09 Score=87.27 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=69.8
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCCC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGGK 84 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GGK 84 (466)
..|+|.|++.+|+.+.+.+. +++++..|+..++++.|||+..+||+|+|++|.++.++.++ +++|++++++.||.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk-~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIK-RHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEE-TTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CeEEEEEECCCCCEEEEEEC-CCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 47999999999999999998 89999999999999999999999999999999999888774 67999999999984
No 82
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=4.9e-09 Score=91.97 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=64.4
Q ss_pred CCcEEEEEE-eCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeee
Q 012310 8 PKALQLFVK-LLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRL 80 (466)
Q Consensus 8 ~~~MqIfVK-tldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL 80 (466)
...|.|.|+ +.+|+.+++.|. ++.||.+||..|+..+++|++.|+|+|+||.|.|+.+|.+| +.|+||+++-
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~-~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFK-VDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEEC-SSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred CccEEEEEEEcCCCcEEEEEeC-CCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 346888887 557889999997 89999999999999999999999999999999999999986 5699999864
No 83
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.85 E-value=9.7e-09 Score=88.00 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=70.3
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
...|+|+|++.+|+.+.+.+. +++++..|+..++++.|||+..+||+|+|++|.++.++.++ +++|++++++.||
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk-~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIK-RHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEEC-TTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEEc-CCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 468999999999999999997 89999999999999999999999999999999999888774 6799999999998
Q ss_pred C
Q 012310 84 K 84 (466)
Q Consensus 84 K 84 (466)
-
T Consensus 101 ~ 101 (104)
T 1wz0_A 101 P 101 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 84
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.81 E-value=1.5e-08 Score=85.20 Aligned_cols=70 Identities=6% Similarity=0.032 Sum_probs=59.4
Q ss_pred CCCcEEEEEEeCCCC--EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEec--Ce---ec-CCCCccccC----CCce
Q 012310 7 SPKALQLFVKLLNGK--TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYS--GL---QL-KDRTVISDD----HITF 74 (466)
Q Consensus 7 s~~~MqIfVKtldGk--T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfn--GK---~L-~DsstLss~----gsTL 74 (466)
.+..++|+|++..+. ++++.|+ ++.||.+||.+|+..+|||+++|||+|. |+ +| .|+.+|.+| +++|
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~-~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLA-KDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEE-TTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeC-ccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 356899999987664 8899998 8999999999999999999999999997 55 44 788888876 5688
Q ss_pred eEE
Q 012310 75 NLV 77 (466)
Q Consensus 75 ~Lv 77 (466)
+|+
T Consensus 91 hlv 93 (95)
T 2kjr_A 91 HVV 93 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.73 E-value=1.5e-08 Score=86.34 Aligned_cols=71 Identities=20% Similarity=0.153 Sum_probs=59.8
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCe-----------e----cCCCCccccC--
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGL-----------Q----LKDRTVISDD-- 70 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK-----------~----L~DsstLss~-- 70 (466)
.+.|+|+|++++|+. .|.|..|+.||.+||.+|++.++||+++|+|+|+|+ + +.++.+|.+|
T Consensus 5 ~~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 5 SSGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp CCCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred CCeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 456999999999976 688854789999999999999999999999999888 4 4677888886
Q ss_pred --CCceeEEee
Q 012310 71 --HITFNLVLR 79 (466)
Q Consensus 71 --gsTL~LvlR 79 (466)
+++|||+..
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 568887653
No 86
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.71 E-value=4e-08 Score=84.64 Aligned_cols=74 Identities=11% Similarity=0.124 Sum_probs=66.0
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
+..|+|.|++ +|+.+.+.+. +++++..|+..++++.||++..+||+|+|++|.++.+..++ +++|++.+++.||
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk-~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEE-TTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEec-CCcEEEEEeC-CCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 4679999999 9999999998 89999999999999999999999999999999999888774 6799999999987
No 87
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.68 E-value=3.6e-08 Score=85.40 Aligned_cols=76 Identities=9% Similarity=0.164 Sum_probs=69.7
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL~GG 83 (466)
+..|+|+|++.+|+.+.+.+. +++++..|+..++++.|||+.++||+|.|++|.++.++.++ +++|++++.+.||
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk-~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIK-SRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEEC-TTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEEC-CCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence 467999999999999999997 89999999999999999999999999999999999887763 6799999999998
Q ss_pred C
Q 012310 84 K 84 (466)
Q Consensus 84 K 84 (466)
-
T Consensus 103 ~ 103 (110)
T 2k8h_A 103 L 103 (110)
T ss_dssp -
T ss_pred c
Confidence 5
No 88
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.65 E-value=5.4e-08 Score=82.28 Aligned_cols=70 Identities=9% Similarity=0.120 Sum_probs=58.4
Q ss_pred CCCcEEEEEEeCCC--CEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecC---ee----cCCCCccccC----CCc
Q 012310 7 SPKALQLFVKLLNG--KTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSG---LQ----LKDRTVISDD----HIT 73 (466)
Q Consensus 7 s~~~MqIfVKtldG--kT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnG---K~----L~DsstLss~----gsT 73 (466)
....+.|+|++... +.+.+.|+ |+.||.+||.+|+..+|||+++|||+|.| +. +.|+.+|.+| +++
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~-~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~ 89 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFS-PQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFR 89 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEEC-TTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCE
T ss_pred CCceEEEEEEECCCCceEEEEEeC-CCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCE
Confidence 35789999997544 47899998 89999999999999999999999999987 33 3777888876 568
Q ss_pred eeEE
Q 012310 74 FNLV 77 (466)
Q Consensus 74 L~Lv 77 (466)
|+|+
T Consensus 90 Ihlv 93 (97)
T 2kj6_A 90 LHII 93 (97)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 89
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.56 E-value=2e-07 Score=77.54 Aligned_cols=70 Identities=9% Similarity=0.094 Sum_probs=57.5
Q ss_pred CCcEEEEEEeCCCC-EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecC---ee----cCCCCccccC----CCcee
Q 012310 8 PKALQLFVKLLNGK-TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSG---LQ----LKDRTVISDD----HITFN 75 (466)
Q Consensus 8 ~~~MqIfVKtldGk-T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnG---K~----L~DsstLss~----gsTL~ 75 (466)
.+.|.|+|+..... .+.+.|+ ++.||.+||.+|+..+|||+++|||+|.| +. +.|+.+|.+| +++||
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~-~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~ 83 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYS-RSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIH 83 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEEC-TTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred CcEEEEEEEECCCCeeEEEEcC-ccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEE
Confidence 34589999875442 6899997 89999999999999999999999999976 43 4788899886 46787
Q ss_pred EEe
Q 012310 76 LVL 78 (466)
Q Consensus 76 Lvl 78 (466)
|+-
T Consensus 84 v~d 86 (95)
T 1v6e_A 84 VID 86 (95)
T ss_dssp EBC
T ss_pred EEE
Confidence 764
No 90
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.55 E-value=2.3e-07 Score=80.91 Aligned_cols=69 Identities=7% Similarity=0.036 Sum_probs=57.8
Q ss_pred CcEEEEEEeCCCC-EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecC---e---e-cCCCCccccC----CCceeE
Q 012310 9 KALQLFVKLLNGK-TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSG---L---Q-LKDRTVISDD----HITFNL 76 (466)
Q Consensus 9 ~~MqIfVKtldGk-T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnG---K---~-L~DsstLss~----gsTL~L 76 (466)
..|.|+|+...+. .+.+.|+ |+.||.+||.+|+..+|||+++|||+|.| + + +.|+.+|.+| +++|||
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~-~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYP-AGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEE-TTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeC-CCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 3799999986543 6899998 89999999999999999999999999976 4 3 3678888886 568888
Q ss_pred Ee
Q 012310 77 VL 78 (466)
Q Consensus 77 vl 78 (466)
+.
T Consensus 84 vd 85 (122)
T 1t0y_A 84 VD 85 (122)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 91
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.55 E-value=3.1e-07 Score=72.93 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=61.0
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEE
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLV 77 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~Lv 77 (466)
.|+|.|++.+|+.+.+.+. +++++..|+..++++.|+|+..++|+|+|++|.++.++.++ +++|++.
T Consensus 1 ~i~lkV~~~~g~~v~~~v~-~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIK-RHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp CEEEEEECTTSCEEEEEEC-TTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEC-CCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 3899999999999999997 89999999999999999999999999999999999888774 5677764
No 92
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.54 E-value=1.1e-07 Score=78.61 Aligned_cols=69 Identities=7% Similarity=0.073 Sum_probs=58.1
Q ss_pred cEEEEEEe--CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe-------cCeecCCCCccccC----CCceeE
Q 012310 10 ALQLFVKL--LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY-------SGLQLKDRTVISDD----HITFNL 76 (466)
Q Consensus 10 ~MqIfVKt--ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf-------nGK~L~DsstLss~----gsTL~L 76 (466)
.+.|.|.. ...+.+-++|+ ++.||.+||.+|+..+|||+++|||+| .|+++.|+.+|.+| +++|||
T Consensus 2 ~V~v~iths~~~~~~~E~r~~-~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYG-LAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEE-TTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcC-ccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 45666653 34566789997 899999999999999999999999996 58899999999987 579999
Q ss_pred Eee
Q 012310 77 VLR 79 (466)
Q Consensus 77 vlR 79 (466)
+-+
T Consensus 81 vd~ 83 (86)
T 4b6w_A 81 VDL 83 (86)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 93
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.48 E-value=6.3e-07 Score=72.59 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=62.4
Q ss_pred CCCcEEEEEEeCCCC-EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEE
Q 012310 7 SPKALQLFVKLLNGK-TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLV 77 (466)
Q Consensus 7 s~~~MqIfVKtldGk-T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~Lv 77 (466)
.+..|+|.|++.+|+ .+.+.+. +++++..|+..++++.|||+.++||+|.|++|.++.++.++ +++|++.
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~-~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLS-PDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEEC-TTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEEC-CCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 467899999999996 8999997 89999999999999999999999999999999999887763 5677663
No 94
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.43 E-value=2.7e-07 Score=92.98 Aligned_cols=67 Identities=24% Similarity=0.375 Sum_probs=60.0
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEE---ecCeecCCCCccccC----CCceeEE
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLI---YSGLQLKDRTVISDD----HITFNLV 77 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLI---fnGK~L~DsstLss~----gsTL~Lv 77 (466)
.+|+|.|+. .|++++|.++ ++.||.+||++|++.+|||+++|+|+ |+|++|.|+.+|+++ +++|+|+
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~-~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~ 77 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLT-DQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMV 77 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEE-TTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEE
T ss_pred ceEEEEEEE-CCEEEEEEEC-CCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEE
Confidence 479999995 7999999998 89999999999999999999999999 899999999998876 5577665
No 95
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.43 E-value=2.2e-07 Score=75.81 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=54.4
Q ss_pred EEEEEEeCCCCEEEEE-ecCCCCCHHHHHHHHHHhhCCCCCCeEEEec--CeecC---CCCccccC----CCceeEEe
Q 012310 11 LQLFVKLLNGKTTTLN-FTTCHVYGHEIKNRIYEATKIPTHLQRLIYS--GLQLK---DRTVISDD----HITFNLVL 78 (466)
Q Consensus 11 MqIfVKtldGkT~tL~-V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfn--GK~L~---DsstLss~----gsTL~Lvl 78 (466)
|+|+|++.+|+. .+. |+ ++.||.+||++|++..|||++.|+|+|+ +++|. ++.+|.++ +++|+|.-
T Consensus 1 m~i~vr~~~G~~-~v~~l~-~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLS-SRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCC-TTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecC-CCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 789999999965 477 76 7999999999999999999999999986 47774 56788876 45666653
No 96
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.12 E-value=1.2e-05 Score=70.16 Aligned_cols=73 Identities=11% Similarity=0.202 Sum_probs=65.5
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc----CCCceeEEeeecC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD----DHITFNLVLRLLG 82 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss----~gsTL~LvlRL~G 82 (466)
..|+|.|+..+|....+.+. +++++..|+..++++.|+|+..+||+|.|++|.++.+..+ .+++|.+.+...|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk-~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVK-MTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEE-TTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEEc-cCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 57999999999999999997 8999999999999999999999999999999999888766 3779988887654
No 97
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.96 E-value=2.6e-05 Score=74.00 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=67.8
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc----CCCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD----DHITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss----~gsTL~LvlRL~GG 83 (466)
...|+|.|+ .+|....+.+. +++++..|+..++++.|+|..++||+|+|++|.++.+..+ .+++|++.+.+.||
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk-~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEEC-TTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCeEEEEEe-cCCCEEEEEEe-cCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 456999997 59999999997 8999999999999999999999999999999999988776 37899999999887
Q ss_pred Cc
Q 012310 84 KG 85 (466)
Q Consensus 84 KG 85 (466)
.+
T Consensus 105 ~k 106 (200)
T 3pge_A 105 GG 106 (200)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 98
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.90 E-value=3.9e-05 Score=63.74 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=56.5
Q ss_pred CCcEEEEEEe---CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecC-------eec-CCCCccccC----CC
Q 012310 8 PKALQLFVKL---LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSG-------LQL-KDRTVISDD----HI 72 (466)
Q Consensus 8 ~~~MqIfVKt---ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnG-------K~L-~DsstLss~----gs 72 (466)
...++|+|++ ++|..+.+.|+ ++.||.+||.+|+..+|+|+..|+|+|.+ ..| +|..+|..| ++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~-~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLP-DSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEE-TTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred CccEEEEEEecCCCCCcEEEEECC-CCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 3468888876 47888999998 89999999999999999999999999862 224 456778776 56
Q ss_pred ceeEEe
Q 012310 73 TFNLVL 78 (466)
Q Consensus 73 TL~Lvl 78 (466)
+|+|..
T Consensus 86 ~I~V~d 91 (97)
T 1wjn_A 86 CLLVRW 91 (97)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 888765
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.81 E-value=2.8e-05 Score=73.71 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=68.9
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc----CCCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD----DHITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss----~gsTL~LvlRL~GG 83 (466)
...|+|.|+ .+|..+.+.|. +++++..|+..++++.|||+..++|+|+|+.|.++.|..+ .+++|.+.+.+.||
T Consensus 55 ~e~InLKVk-~dG~eV~FKIK-rtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEE-TTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred CCcEEEEEe-cCCCEEEEEEc-cCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 456999997 59999999998 8999999999999999999999999999999999888766 37899999999998
Q ss_pred Ccc
Q 012310 84 KGG 86 (466)
Q Consensus 84 KGG 86 (466)
-.-
T Consensus 133 ~~~ 135 (207)
T 3tix_A 133 LPS 135 (207)
T ss_dssp GGG
T ss_pred Ccc
Confidence 643
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.34 E-value=3.2e-05 Score=74.21 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=0.9
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc----CCCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD----DHITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss----~gsTL~LvlRL~GG 83 (466)
...|+|.| +.+|....+.+. +++.+..|+..++++.|+|+..+||+|+|++|.++.|..+ .+++|.+.+.+.||
T Consensus 19 ~e~InLKV-~qdGseV~FKIK-rtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCeEEEEE-eCCCCEEEEEEc-cCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 35799999 789999999997 8999999999999999999999999999999999888766 47899999999998
No 101
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.25 E-value=0.00043 Score=58.46 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=40.9
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCC
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKD 63 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~D 63 (466)
..+..+.|.+. |..|+..||++|++++|||+.+|+|+|.|+++.-
T Consensus 21 ~~a~~h~v~I~-~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l 65 (94)
T 4efo_A 21 QQMTAHKIYIH-SYNTATIFHELVYKQTKIISSNQELIYEGRRLVL 65 (94)
T ss_dssp TTTEEEEEEEE-TTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECC
T ss_pred ccceEEEEEec-cchHHHHHHHHHHHHhCCCHHHHHHHhCCCcccc
Confidence 35778999998 8999999999999999999999999999988754
No 102
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.12 E-value=0.0013 Score=62.26 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=65.9
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc----CCCceeEEeeecC
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD----DHITFNLVLRLLG 82 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss----~gsTL~LvlRL~G 82 (466)
+...|+|.|+. +|....+.+. +++.+..|+...+++.|+|..+++|+|.|+.+.++.+... .+++|.+.....|
T Consensus 18 ~~~~i~ikv~~-~~~~v~~~i~-~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEE-TTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CCCcEEEEEEc-CCCEEEEEEe-eCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 45679999997 8888889997 7999999999999999999999999999999998765443 4678999998888
Q ss_pred CC
Q 012310 83 GK 84 (466)
Q Consensus 83 GK 84 (466)
|-
T Consensus 96 g~ 97 (209)
T 3uf8_A 96 GS 97 (209)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 103
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.56 E-value=0.00022 Score=73.07 Aligned_cols=86 Identities=13% Similarity=0.159 Sum_probs=10.0
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc----CCCceeEEeeecCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD----DHITFNLVLRLLGG 83 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss----~gsTL~LvlRL~GG 83 (466)
...|+|.|+. +|....+.+. +++++..|+..++++.|+++..++|+|+|+.|.++.|..+ .+++|.+.+.+.||
T Consensus 19 ~~~I~LKV~~-~g~~v~FkIk-~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEec-CCcEEEEEEe-cCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 4578899987 7888888887 7999999999999999999999999999999999888665 47899999999999
Q ss_pred CcccCcchhhhh
Q 012310 84 KGGFGSLLRGAA 95 (466)
Q Consensus 84 KGGFGS~LRa~g 95 (466)
.-.|-.+|+-.-
T Consensus 97 ~~~Yl~l~~~Il 108 (360)
T 3ix6_A 97 MRTYLDLLQHVL 108 (360)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 104
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=96.55 E-value=0.0018 Score=52.48 Aligned_cols=66 Identities=6% Similarity=0.008 Sum_probs=48.3
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCee---c--CCCCcccc----CCCceeEE
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQ---L--KDRTVISD----DHITFNLV 77 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~---L--~DsstLss----~gsTL~Lv 77 (466)
.|.|-|++.+| ++.|.++ +++|+.+|+.+|.+.+++|.+.|.|.++..+ | .++.+|.+ +|+.|+|.
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~-~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITAT-KRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSE-EEECCCC-SSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCC-CEEEEcC-CcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 58899999998 4567776 8899999999999999999988877765443 3 23444443 35666554
No 105
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.42 E-value=0.016 Score=48.86 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=58.1
Q ss_pred CCCcEEEEEEeCCCC-EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc----CCCceeE
Q 012310 7 SPKALQLFVKLLNGK-TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD----DHITFNL 76 (466)
Q Consensus 7 s~~~MqIfVKtldGk-T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss----~gsTL~L 76 (466)
.+..|+|.|+..+|. .+.+.+. +++++..|....+++.++++...+|+|.|..|.++.+..+ .+++|.+
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk-~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLS-RDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEV 95 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEE-TTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEC-CCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 356799999999995 7888887 7899999999999999999999999999999998877554 3455543
No 106
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=96.37 E-value=0.031 Score=45.94 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=60.4
Q ss_pred CCCCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCC-CeEEEecCeecCCCCccccC----CCceeEE
Q 012310 5 ATSPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTH-LQRLIYSGLQLKDRTVISDD----HITFNLV 77 (466)
Q Consensus 5 ~~s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e-~QRLIfnGK~L~DsstLss~----gsTL~Lv 77 (466)
+|-..-|.+++++....-+-+.+. ++.+|..|....+.+.+||++ ..||.|.|..|.+..++.++ ++-|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~dl~f~I~-~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 4 HHHHKLITLLLRSSKSEDLRLSIP-VDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp TCCCCEEEEEEEESSSCCEEEEEE-TTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred cchhHHHHHhhhccCCCCeEEEec-CCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 445677899999876666788887 799999999999999999999 89999999999999998876 3445444
No 107
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.96 E-value=0.014 Score=48.88 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=56.7
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccc----cCCCceeEEe
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVIS----DDHITFNLVL 78 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLs----s~gsTL~Lvl 78 (466)
.-|.|.|-..+|+..++.+. |+.++.+|.+..++++|+.+++..|.|+++.|+.+..+. .+++.|.|+.
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvt-p~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVT-PSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp --CCEEEECTTSCEEEECCC-TTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred CccEEEEEcCCCcEEEEEEC-CCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEE
Confidence 45789999999999999996 999999999999999999999999999999997664432 1466776654
No 108
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=95.48 E-value=0.0024 Score=65.05 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=0.0
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc----CCCceeEEeeecCCC
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD----DHITFNLVLRLLGGK 84 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss----~gsTL~LvlRL~GGK 84 (466)
..|+|.|+. +|....+.+. +++++..|+..++++.|+|..+++|+|+|++|.++.|..+ .+++|.+.+...||.
T Consensus 29 ~~i~lkv~~-~~~~~~~~i~-~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 29 THINLKVSD-GSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEEEEEC-CCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 467888887 7788888886 7899999999999999999999999999999998877665 478999999999987
Q ss_pred ccc
Q 012310 85 GGF 87 (466)
Q Consensus 85 GGF 87 (466)
..|
T Consensus 107 n~~ 109 (389)
T 4da1_A 107 NLY 109 (389)
T ss_dssp ---
T ss_pred ccc
Confidence 654
No 109
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=94.95 E-value=0.13 Score=43.55 Aligned_cols=69 Identities=9% Similarity=0.105 Sum_probs=57.4
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCcccc----CCCceeEE
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISD----DHITFNLV 77 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss----~gsTL~Lv 77 (466)
....|+|.|+. +|....+.+. .++....|....+++.|+++...|++|.|..|.++.|..+ .+++|.+.
T Consensus 18 ~~~~IniKV~~-~g~ev~FkIK-~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~ 90 (95)
T 2l76_A 18 TPRLFPLKIRC-RADLVRLPLR-MSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCV 90 (95)
T ss_dssp CCCCEEEEEEC-SSSEEEEEEC-SSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEE
T ss_pred CCCeEEEEEEc-CCcEEEEEEe-cCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEE
Confidence 35569999995 7888888887 6888999999999999999999999999999999876443 35666544
No 110
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=94.31 E-value=0.26 Score=39.62 Aligned_cols=62 Identities=10% Similarity=0.076 Sum_probs=49.0
Q ss_pred CCCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecC--C-CCcccc
Q 012310 6 TSPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLK--D-RTVISD 69 (466)
Q Consensus 6 ~s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~--D-sstLss 69 (466)
|+.....|-|++++|..+.-.|. ++.||.+|.+.|.. .+.+...+.|+. -.+.|. | +.+|.+
T Consensus 3 ~~~~~~~i~iRlpdG~r~~~~F~-~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e 69 (84)
T 3qx1_A 3 HMEPVSKLRIRTPSGEFLERRFL-ASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLE 69 (84)
T ss_dssp -CCCEEEEEEECTTSCEEEEEEE-TTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTT
T ss_pred CCCCeEEEEEECCCCCEEEEEeC-CCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHH
Confidence 35678899999999999888997 78999999999988 567778888884 467774 2 456654
No 111
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=93.56 E-value=0.088 Score=46.65 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=35.3
Q ss_pred EEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCC
Q 012310 12 QLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTH 50 (466)
Q Consensus 12 qIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e 50 (466)
.|.|++++|+..++.|+ .+.+|.+++..|+...||+..
T Consensus 13 ~LkV~llDg~~ktl~VD-~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVD-DSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEECTTSCEEEEEEE-ECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEEcCCCCEEEEEeC-CCcCHHHHHHHHHHHhCCCCc
Confidence 58899999999999998 899999999999999999865
No 112
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=93.27 E-value=0.21 Score=39.78 Aligned_cols=66 Identities=9% Similarity=0.195 Sum_probs=49.1
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCCCceeEEeeecCC
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GG 83 (466)
|+|.|+.+......+.++ +..|+.+|... ++||+...-+..||+.+..+..+ . +++|.++.-.-||
T Consensus 1 M~v~Vkl~g~~~~~~ev~-~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~~l-~-GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVD-DDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQSV-E-VDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECS-TTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTSSS-C-CCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcC-CCCcHHHHHHH----cCCCcceEEEEECCEECCHHHCC-C-CCEEEEEEeeccc
Confidence 788898774345667886 67899998754 78999888777899999888765 3 8888665544444
No 113
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=91.84 E-value=0.82 Score=39.78 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=48.5
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecC--C-CCcccc
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLK--D-RTVISD 69 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~--D-sstLss 69 (466)
.....|.||+++|..+.-.|. ++.||.+|.+.|... +.+...+.|+. -.+.|. + +.+|.+
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~-~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e 105 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLP-EQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQE 105 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEE-TTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTT
T ss_pred CCcEEEEEECCCCCEEEEEeC-CCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHH
Confidence 457899999999999999998 799999999999876 77777788874 577773 3 456655
No 114
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=91.78 E-value=0.91 Score=38.49 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=49.8
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecCC---CCcccc
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLKD---RTVISD 69 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~D---sstLss 69 (466)
.....|.||+++|..+.-.|. .+.||.+|.+.|....+.+...+.|+. -.+.|.. +.+|.+
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~-~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e 76 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFP-SDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLD 76 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEEC-TTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGG
T ss_pred CCcEEEEEECCCCCEEEEEeC-CCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHH
Confidence 456899999999999999997 799999999999988788777788874 5677762 356655
No 115
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=90.67 E-value=0.77 Score=35.85 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=47.4
Q ss_pred EEEEEEeCCCCE-EEEEecCCCCCHHHHHHHHHHhhCCCC--CCeEEEecCeecCCCCccccCCCceeEEeeecCC
Q 012310 11 LQLFVKLLNGKT-TTLNFTTCHVYGHEIKNRIYEATKIPT--HLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 11 MqIfVKtldGkT-~tL~V~sPs~TVsdLK~rI~e~~GIP~--e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GG 83 (466)
|.|.|+.|.... ..+.+. ..||.+|++.+....++.. ....+..||+.+.+..+.-..++.+.+.++..||
T Consensus 1 M~v~V~~fa~l~~~~~e~~--~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFIK--ANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEEEEECTTCCCCCEEEE--CSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEECCBCCC
T ss_pred CEEEEEEEeecceeEEeeC--CCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEECCCCCC
Confidence 567788775432 345553 5699999999986533322 3345667888865544444568899999999887
No 116
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=89.47 E-value=0.86 Score=37.50 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=42.2
Q ss_pred CCCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEec
Q 012310 6 TSPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYS 57 (466)
Q Consensus 6 ~s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfn 57 (466)
+|++.|.|.|..- -++.+.++ +..+..+|.++|.+++++|++...|.|.
T Consensus 1 ~~~~~~~VKV~~~--~tvairvp-~~~~y~~L~~~l~~kL~l~~~~~~LsYk 49 (83)
T 1oey_A 1 GSHMAYTLKVHYK--YTVVMKTQ-PGLPYSQVRDMVSKKLELRLEHTKLSYR 49 (83)
T ss_dssp CCSSCEEEEEESS--SEEEEEEC-TTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred CCCCcEEEEEEEE--EEEEEECC-CCCCHHHHHHHHHHHhCCCcceeEEEee
Confidence 3677788888853 68999998 7899999999999999999988888884
No 117
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=89.14 E-value=3 Score=32.26 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=48.2
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCCCceeEEeeecCC
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GG 83 (466)
.|+|+|.--.+ ...+.++ ...|+.+|...+ +++.....+..||..+..+..| ..++.|.+.....||
T Consensus 4 ~m~i~vNg~~~-~~~~~~~-~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~~L-~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESG-APRRIKDVLGEL----EIPIETVVVKKNGQIVIDEEEI-FDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTE-EEEEEES-SCCBHHHHHHHT----TCCTTTEEEEETTEECCTTSBC-CTTCEEEEEECTTCC
T ss_pred eEEEEEeCccC-ceeEECC-CCCcHHHHHHHh----CCCCCCEEEEECCEECCCcccC-CCCCEEEEEeccccC
Confidence 58888874321 2456665 457999998875 5777777778899999877755 457888888877776
No 118
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=87.03 E-value=4.2 Score=33.24 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=48.5
Q ss_pred CCCCcEEEEEEeCC------C-CEEEEEecCCCCCHHHHHHHHHHhhC-CC----------CCCeEEEecCeecCCCCcc
Q 012310 6 TSPKALQLFVKLLN------G-KTTTLNFTTCHVYGHEIKNRIYEATK-IP----------THLQRLIYSGLQLKDRTVI 67 (466)
Q Consensus 6 ~s~~~MqIfVKtld------G-kT~tL~V~sPs~TVsdLK~rI~e~~G-IP----------~e~QRLIfnGK~L~DsstL 67 (466)
|-.-.|+|.|+.|. | ....+.++ ...||.+|...+..... +. .....+..||+.+..+..|
T Consensus 5 ~~~~~~~v~V~~FA~lre~~g~~~~~~e~~-~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L 83 (98)
T 1vjk_A 5 HHHGSVKVKVKYFARFRQLAGVDEEEIELP-EGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEEL 83 (98)
T ss_dssp ----CEEEEEEECTHHHHHHSSSEEEEEEC-TTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBC
T ss_pred cccCcEEEEEEEhHHHHHHhCCCeEEEECC-CCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCC
Confidence 34567889998774 4 35677775 56799999999987631 10 1334566799888765555
Q ss_pred ccCCCceeEEeeecCC
Q 012310 68 SDDHITFNLVLRLLGG 83 (466)
Q Consensus 68 ss~gsTL~LvlRL~GG 83 (466)
..++.|.+.+...||
T Consensus 84 -~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 84 -KDGDVVGVFPPVSGG 98 (98)
T ss_dssp -CTTCEEEEESCC---
T ss_pred -CCCCEEEEECCCCCC
Confidence 457888888888776
No 119
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=84.86 E-value=1.4 Score=36.32 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=43.0
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCC-CCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC---CccccCCCceeEEeeecC
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCH-VYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR---TVISDDHITFNLVLRLLG 82 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs-~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds---stLss~gsTL~LvlRL~G 82 (466)
+...|+|+| +|+.+. ++ .. .||.+|...+ +++.....+..||..+..+ .+....++.|.++....|
T Consensus 17 ~~~~M~I~v---NGe~~e--l~-~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~V~G 86 (87)
T 1tyg_B 17 IGGRHMLQL---NGKDVK--WK-KDTGTIQDLLASY----QLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGG 86 (87)
T ss_dssp -----CEEE---TTEEEC--CS-SSCCBHHHHHHHT----TCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEECCC
T ss_pred CCcceEEEE---CCEEEE--CC-CCCCcHHHHHHHh----CCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEccccc
Confidence 345677765 476544 44 34 7999998865 5777777778899998653 233456888988887777
Q ss_pred C
Q 012310 83 G 83 (466)
Q Consensus 83 G 83 (466)
|
T Consensus 87 G 87 (87)
T 1tyg_B 87 G 87 (87)
T ss_dssp -
T ss_pred C
Confidence 6
No 120
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=83.98 E-value=3.5 Score=34.74 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=45.4
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecCC--CCcccc
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLKD--RTVISD 69 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~D--sstLss 69 (466)
....|.||+++|..+.-+|. .+.||.+|.+.|... +.....+.|+. -.+.|.. +.+|.+
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~-~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e 84 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFF-KSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLED 84 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEE-SSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHH
T ss_pred CcEEEEEECCCCCEEEEEeC-CCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHH
Confidence 47899999999999888997 789999999999865 45556677774 4667752 355554
No 121
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=81.82 E-value=7.6 Score=30.81 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=43.3
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhhC-C-----CC-----CCeEEEecCeecCCCCccccCCCceeEEeeecCC
Q 012310 21 KTTTLNFTTCHVYGHEIKNRIYEATK-I-----PT-----HLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 21 kT~tL~V~sPs~TVsdLK~rI~e~~G-I-----P~-----e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GG 83 (466)
....+.++ ...||.+|++.+..... + .. ....+..||+.+..+..| ..++.|.+.+++.||
T Consensus 18 ~~~~~~~~-~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l-~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVD-GDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEAT-AAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECC-TTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBC-CTTCEEEEECCCSCC
T ss_pred CeEEEECC-CCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCccc-CCCCEEEEECCCCCC
Confidence 45677775 46799999999987642 1 00 124566799988776655 458899999998887
No 122
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=80.58 E-value=4.2 Score=32.67 Aligned_cols=70 Identities=10% Similarity=0.142 Sum_probs=44.9
Q ss_pred EEEEEEeCC------CCEEEEEecCCCCCHHHHHHHHHHhhC-----C-C---C----CCeEEEecCeecCC----CCcc
Q 012310 11 LQLFVKLLN------GKTTTLNFTTCHVYGHEIKNRIYEATK-----I-P---T----HLQRLIYSGLQLKD----RTVI 67 (466)
Q Consensus 11 MqIfVKtld------GkT~tL~V~sPs~TVsdLK~rI~e~~G-----I-P---~----e~QRLIfnGK~L~D----sstL 67 (466)
|+|.|+.|. |....+.+ ...||.+|+..+..+.. + . . ....+..||+.+.. +..|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~--~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA--SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE--CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec--CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCC
Confidence 566776543 43334654 35799999999987642 0 0 0 12456669988764 3333
Q ss_pred ccCCCceeEEeeecCC
Q 012310 68 SDDHITFNLVLRLLGG 83 (466)
Q Consensus 68 ss~gsTL~LvlRL~GG 83 (466)
..++.|.+.+++.||
T Consensus 79 -~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 79 -ADGDSVTILPAVAGG 93 (93)
T ss_dssp -CTTCEEEEEECCTTC
T ss_pred -CCCCEEEEECCCCCC
Confidence 457889999999887
No 123
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=79.63 E-value=4.2 Score=35.33 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=46.9
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhh-CCCCCCeEEEe--cCeecCC-CCcccc
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEAT-KIPTHLQRLIY--SGLQLKD-RTVISD 69 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~-GIP~e~QRLIf--nGK~L~D-sstLss 69 (466)
.....|.|++++|..+.-.|. .+.||.+|.+.|.... +.....+.|+. -.+.|.+ +.+|.+
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~-~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~e 114 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFN-HSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKE 114 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECC-SSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHH
T ss_pred CCcEEEEEECCCCCEEEEEeC-CCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHH
Confidence 456889999999999999997 7999999999998863 34556677774 5777765 355544
No 124
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=78.65 E-value=5.7 Score=32.33 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=48.2
Q ss_pred CcEEEEEEe--CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCC-----CeEEEecCeecCCCCccccC
Q 012310 9 KALQLFVKL--LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTH-----LQRLIYSGLQLKDRTVISDD 70 (466)
Q Consensus 9 ~~MqIfVKt--ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e-----~QRLIfnGK~L~DsstLss~ 70 (466)
+-|+|.|.+ ..|+++-|+++ -..|+..|++.|.+.++++.. +.|+...+..|.....|.+|
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP-~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~ 70 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLS-DYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDC 70 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEE-TTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGG
T ss_pred cEEEEEEEeeccCCceEEEECC-CchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeC
Confidence 567888886 58999999998 588999999999999988753 23445567778888888775
No 125
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=77.08 E-value=8.8 Score=41.27 Aligned_cols=71 Identities=13% Similarity=0.244 Sum_probs=50.3
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCC-CeEEEe---cC--eecCCCCccccC----CCceeEE
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTH-LQRLIY---SG--LQLKDRTVISDD----HITFNLV 77 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e-~QRLIf---nG--K~L~DsstLss~----gsTL~Lv 77 (466)
+.+|.|.|.++|| ++.|.|. +.+|+.+|.+.|+...||+.. .|-|.| .| ..|..+..+... +.++.|.
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd-~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~ 79 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQ-QTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFK 79 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEE-TTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEE
T ss_pred CceEEEEEEeCCC-eEEEEEC-CCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEE
Confidence 3579999999999 6779997 789999999999999999865 445655 22 345555555432 3455565
Q ss_pred eee
Q 012310 78 LRL 80 (466)
Q Consensus 78 lRL 80 (466)
+|.
T Consensus 80 FRv 82 (575)
T 2i1j_A 80 FRA 82 (575)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 126
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=76.10 E-value=11 Score=36.46 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=50.3
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCC-eEEEe--cCe--ecCCCCccccC----CCceeEEe
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHL-QRLIY--SGL--QLKDRTVISDD----HITFNLVL 78 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~-QRLIf--nGK--~L~DsstLss~----gsTL~Lvl 78 (466)
..+|.+.|.++|| +..+.+. +.+|+.+|.+.|+...||.... +-|.+ +|. .|..+..+... +..+.|.+
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~-~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~f 97 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCE-MKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHF 97 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEE-TTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeC-CCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEE
Confidence 4678899999999 7889997 7899999999999999998743 44554 332 35555555442 34555555
Q ss_pred ee
Q 012310 79 RL 80 (466)
Q Consensus 79 RL 80 (466)
|.
T Consensus 98 r~ 99 (314)
T 1h4r_A 98 LA 99 (314)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 127
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=74.29 E-value=19 Score=30.72 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=46.1
Q ss_pred CcEEEEEEeCC------C-C-EEEEEecC--CCCCHHHHHHHHHHhh-CCC---------CCCeE-EEecCeec---CCC
Q 012310 9 KALQLFVKLLN------G-K-TTTLNFTT--CHVYGHEIKNRIYEAT-KIP---------THLQR-LIYSGLQL---KDR 64 (466)
Q Consensus 9 ~~MqIfVKtld------G-k-T~tL~V~s--Ps~TVsdLK~rI~e~~-GIP---------~e~QR-LIfnGK~L---~Ds 64 (466)
.+|+|.|+.+. | + .+.|.++. ...||.+|.+.|.+.+ ++. ...+. ++.|++.+ ..-
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 35999998764 3 2 45677752 1259999999998765 111 11122 33466643 222
Q ss_pred CccccCCCceeEEeeecCCC
Q 012310 65 TVISDDHITFNLVLRLLGGK 84 (466)
Q Consensus 65 stLss~gsTL~LvlRL~GGK 84 (466)
.+.-..++.|.+++.+.||-
T Consensus 90 dt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TCBCCSSEEEEEEECSCCCC
T ss_pred CcCCCCCCEEEEeCCCCCCC
Confidence 33334577898999999984
No 128
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=73.00 E-value=4.4 Score=30.75 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=41.1
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC---CccccCCCceeEEeeecCC
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR---TVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds---stLss~gsTL~LvlRL~GG 83 (466)
++|+.+.+ + ...|+.+|...+ +++.....+..||..+... .+.-..++.|.+.....||
T Consensus 5 vNg~~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 5 FNDQAMQC--A-AGQTVHELLEQL----DQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp ESSCEECC--C-TTCCHHHHHHHH----TCCCSSEEEEETTEEECHHHHTTCCCCTTEEECEEESCCCC
T ss_pred ECCEEEEc--C-CCCcHHHHHHHc----CCCCCCEEEEECCEECCchhcCCcCCCCCCEEEEEeecccC
Confidence 35775543 3 457999998876 5677767777899998652 2333567888888877776
No 129
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=71.20 E-value=8.8 Score=29.70 Aligned_cols=53 Identities=6% Similarity=-0.013 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHhhC-----CCCCCeEEEecCeecCCCCccccCCCceeEEeeecCC
Q 012310 30 CHVYGHEIKNRIYEATK-----IPTHLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 30 Ps~TVsdLK~rI~e~~G-----IP~e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GG 83 (466)
...||.+|+..+..... ++.....+..||+.+..+..| ..++.|.+.++..||
T Consensus 24 ~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l-~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 24 DFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPL-TDGDEVAFFPPVTGG 81 (81)
T ss_dssp CCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBC-CTTCEEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCC-CCCCEEEEeCCCCCC
Confidence 46799999999875531 223344677799988765555 457889898888876
No 130
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=70.29 E-value=34 Score=28.19 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=46.9
Q ss_pred CcEEEEEEeCCCC-EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEE-ec---CeecCCCCccccCCCceeEEeeec
Q 012310 9 KALQLFVKLLNGK-TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLI-YS---GLQLKDRTVISDDHITFNLVLRLL 81 (466)
Q Consensus 9 ~~MqIfVKtldGk-T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLI-fn---GK~L~DsstLss~gsTL~LvlRL~ 81 (466)
.+..|+-|.-..+ ..++.|+.+..+|.+||..|..+.++-...+-|. +| |....|+..+-..+++| ++-|++
T Consensus 5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~~lIprnssV-iVrRvP 81 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNALIPKNSSV-IVRRIP 81 (86)
T ss_dssp TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTTCEEETTCCE-EEEEEE
T ss_pred ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCceEEecCCEE-EEEecc
Confidence 3556788877665 5789998778899999999998888766666654 33 44455554333223333 444444
No 131
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=68.79 E-value=19 Score=35.84 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=53.5
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhC----CCCCCeEEEe------cCeecCCCCccccCC----C---
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATK----IPTHLQRLIY------SGLQLKDRTVISDDH----I--- 72 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~G----IP~e~QRLIf------nGK~L~DsstLss~g----s--- 72 (466)
.+.+.|... +.+.++.|+ |+.||.++..+|.++.+ .+.++.-|.. .|+.|.+..+|..|+ +
T Consensus 3 ~~~~~~~~~-~~~~~~~f~-~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~ 80 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFE-PSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTME 80 (371)
T ss_dssp CEEEEEEET-TEEEEEEEC-TTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEE
T ss_pred cEEEEEEec-ceeEEEEEC-CCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceee
Confidence 466666665 888999998 99999999999988764 2455666766 467788888887753 2
Q ss_pred ----ceeEEeeecCCC
Q 012310 73 ----TFNLVLRLLGGK 84 (466)
Q Consensus 73 ----TL~LvlRL~GGK 84 (466)
.+.+.+.|++|.
T Consensus 81 ~~~~~~~~~V~l~dg~ 96 (371)
T 3ivf_A 81 YRKKQRPLKIRMLDGT 96 (371)
T ss_dssp EEECEEEEEEECTTSC
T ss_pred ccCceeEEEEECcCCC
Confidence 355566777775
No 132
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=67.99 E-value=23 Score=29.21 Aligned_cols=49 Identities=6% Similarity=0.054 Sum_probs=39.2
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCC-eEEEec
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHL-QRLIYS 57 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~-QRLIfn 57 (466)
++..|.|.+. +.|..+.+.++ ++.+..+|.++|.+.++++..+ +.|.|-
T Consensus 3 ~~~~vkvK~~-~~gdi~~~~v~-~~i~~~~L~~kv~~~~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 3 LGSQVRVKAY-YRGDIMITHFE-PSISFEGLCNEVRDMCSFDNEQLFTMKWI 52 (89)
T ss_dssp CSSCEEEEEE-SSSCEEEEEEC-TTCCHHHHHHHHHHHTTCCSSCCEEEEEC
T ss_pred CCCeEEEEEE-eCCeEEEEECC-CCCCHHHHHHHHHHHhCCCCCCeEEEEEE
Confidence 4456777765 57899999998 7889999999999999988655 666663
No 133
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=66.55 E-value=8.6 Score=37.37 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=40.2
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCC-eEEEe
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHL-QRLIY 56 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~-QRLIf 56 (466)
...|.+.|.++||....+.|+ +.+|+.+|.+.|++..||.... +-|.+
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd-~~tt~~el~~~v~~~l~L~e~~~FgL~~ 63 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVE-KHAKGQDLLKRVCEHLNLLEEDYFGLAI 63 (296)
T ss_dssp --CCEEEEECTTSCEEEEECC-TTCBHHHHHHHHHHHHTCSSGGGEEEEE
T ss_pred CceEEEEEEccCCCEEEEEEC-CCCCHHHHHHHHHHHcCCCCcceeEEEE
Confidence 357999999999999999998 7999999999999999998654 44554
No 134
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=65.67 E-value=7.5 Score=29.34 Aligned_cols=58 Identities=16% Similarity=0.132 Sum_probs=40.1
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC---CccccCCCceeEEeeecCC
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR---TVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds---stLss~gsTL~LvlRL~GG 83 (466)
++|+.+.+ . ..|+.+|...+ +++.....+..||..+..+ .+.-..++.|.+.+...||
T Consensus 4 vNg~~~~~--~--~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 4 LNGEPRPL--E--GKTLKEVLEEM----GVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp ETTEEECC--T--TCCHHHHHHHH----TBCGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEECCCC-
T ss_pred ECCEEEEc--C--CCcHHHHHHHc----CCCCCcEEEEECCEECCccccCCcCCCCCCEEEEEeecccC
Confidence 46776655 3 46899998876 4666666677899988653 2333568888888877776
No 135
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=64.89 E-value=5.5 Score=31.36 Aligned_cols=59 Identities=7% Similarity=-0.013 Sum_probs=42.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCC---CccccCCCceeEEeeecCCC
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDR---TVISDDHITFNLVLRLLGGK 84 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~Ds---stLss~gsTL~LvlRL~GGK 84 (466)
++|+.+.+ . ..||.+|... +++++...-+..||..+..+ .+.-..++.|.++....||-
T Consensus 5 vNG~~~e~--~--~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 5 INGEQREV--Q--SASVAALMTE----LDCTGGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp ETTEEECC--C--CSBHHHHHHH----TTCCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCCCCCC
T ss_pred ECCEEEEc--C--CCcHHHHHHH----cCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEccccCCc
Confidence 35776655 3 4689998764 67888888888999998763 34445688888887777764
No 136
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=64.64 E-value=4.1 Score=30.40 Aligned_cols=37 Identities=38% Similarity=0.500 Sum_probs=30.8
Q ss_pred CChHHHhhhchhhhhHHHHhcccccCCchhhhhhhhh
Q 012310 412 NSAAEMEVLGLERLKSELQARGLKCGGTLQERAARLF 448 (466)
Q Consensus 412 ~s~~ele~lg~~~lk~~l~~~glkcgGtl~era~Rlf 448 (466)
.|..++..+-+.-||.+|.++||.+.|.=.+-.+||-
T Consensus 5 ~s~~~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~ 41 (50)
T 1zrj_A 5 SSGMDVRRLKVNELREELQRRGLDTRGLKAELAERLQ 41 (50)
T ss_dssp SCCCCGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHH
T ss_pred cCcCCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 3455666788888999999999999999888888874
No 137
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=63.16 E-value=17 Score=29.58 Aligned_cols=72 Identities=13% Similarity=0.220 Sum_probs=43.6
Q ss_pred EEEEEEeCC-------CC-EEEEEecC-CCCCHHHHHHHHHHhhCC-CCCC------------eEEEecCeecC---C-C
Q 012310 11 LQLFVKLLN-------GK-TTTLNFTT-CHVYGHEIKNRIYEATKI-PTHL------------QRLIYSGLQLK---D-R 64 (466)
Q Consensus 11 MqIfVKtld-------Gk-T~tL~V~s-Ps~TVsdLK~rI~e~~GI-P~e~------------QRLIfnGK~L~---D-s 64 (466)
|+|.|+.|. |. ...+.++. ...||.+|.+.+.++..- .... ..+..|+.... . +
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d 81 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKD 81 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCC
Confidence 778887653 33 45566541 257999999999877521 1111 12345777532 2 2
Q ss_pred CccccCCCceeEEeeecCC
Q 012310 65 TVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 65 stLss~gsTL~LvlRL~GG 83 (466)
..| ..++.|.+.+++.||
T Consensus 82 ~~L-~dgDeVa~~Ppv~GG 99 (99)
T 2qjl_A 82 YIL-EDGDIISFTSTLHGG 99 (99)
T ss_dssp CBC-CTTCEEEEEECTTCC
T ss_pred cCc-CCCCEEEEECCCCCC
Confidence 333 457888888888887
No 138
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=63.04 E-value=13 Score=35.57 Aligned_cols=69 Identities=12% Similarity=0.212 Sum_probs=48.0
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCC-eEEEe---cCe--ecCCCCccccC----CCceeEEee
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHL-QRLIY---SGL--QLKDRTVISDD----HITFNLVLR 79 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~-QRLIf---nGK--~L~DsstLss~----gsTL~LvlR 79 (466)
+|.|.|.++|| +..+.+. +.+|+.+|.+.|++..||.... +-|.+ +|. .|..+..+... +..+.|.+|
T Consensus 1 ~i~~~V~l~d~-~~~~~v~-~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQ-PNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp CEEEEEEETTE-EEEEEEC-TTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred CEEEEEEECCc-eEEEEEC-CCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 47899999999 6779997 7899999999999999998754 44554 332 35555444432 234555555
Q ss_pred e
Q 012310 80 L 80 (466)
Q Consensus 80 L 80 (466)
.
T Consensus 79 ~ 79 (294)
T 1ef1_A 79 A 79 (294)
T ss_dssp E
T ss_pred E
Confidence 3
No 139
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=59.61 E-value=15 Score=36.64 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=40.6
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCC-eEEEe
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHL-QRLIY 56 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~-QRLIf 56 (466)
+..+.+.|..++|....+.+. +.+|+.+|.+.|+...+|.... +-|.+
T Consensus 83 ~~~~~~~V~l~dg~~~~~~vd-~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 83 KKQRPLKIRMLDGTVKTIMVD-DSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp ECEEEEEEECTTSCEEEEEEE-TTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred CceeEEEEECcCCCEEEEEEC-CCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 456888999999999999998 7899999999999999988643 44554
No 140
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=59.50 E-value=7.2 Score=31.10 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCC-CCCeEEEecCeecCCC---CccccCCCceeEEeeecCCCc
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIP-THLQRLIYSGLQLKDR---TVISDDHITFNLVLRLLGGKG 85 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP-~e~QRLIfnGK~L~Ds---stLss~gsTL~LvlRL~GGKG 85 (466)
++|+.+.+... ...||.+|... ++++ +...-+..||..+..+ .+.-..++.|.++....||..
T Consensus 5 vNGe~~e~~~~-~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~VgGG~~ 71 (78)
T 2k5p_A 5 VNGKPSTVDGA-ESLNVTELLSA----LKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGGGKL 71 (78)
T ss_dssp ETTEEEECSSC-SCEEHHHHHHH----HTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEECCCCCCSCC
T ss_pred ECCEEEEcCCC-CCCcHHHHHHH----cCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEeeecCCCc
Confidence 35776555311 24689998875 4687 7777788999999775 233356888988887777753
No 141
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=58.80 E-value=19 Score=27.53 Aligned_cols=59 Identities=10% Similarity=0.155 Sum_probs=40.4
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhhCCCCCCe--EEEecCeecCCCCccccCCCceeEEeeecCC
Q 012310 22 TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQ--RLIYSGLQLKDRTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 22 T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~Q--RLIfnGK~L~DsstLss~gsTL~LvlRL~GG 83 (466)
...+.++ ...||.+|...+.....- .... .+..||+.+..+..| ..++.|.+.+...||
T Consensus 17 ~~~~~~~-~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~~~~L-~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLE-QALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQKSDFI-QPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCS-SCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECTTSEE-CTTCEEEEECSCCCC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCCCCCc-CCCCEEEEECCCCCC
Confidence 4555654 467999999998765310 1222 567799998776555 457888888888776
No 142
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=58.17 E-value=37 Score=27.97 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=33.5
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEE
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLI 55 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLI 55 (466)
..|.|.|- +++-.+.|.|+ ++.+..+|+.+|..+..+ +.+.|+
T Consensus 11 ~~~KVK~y-y~DDIiAIrvP-~di~~~~L~dKi~~RLk~--~~~~l~ 53 (85)
T 1ip9_A 11 KTTKIKFY-YKDDIFALMLK-GDTTYKELRSKIAPRIDT--DNFKLQ 53 (85)
T ss_dssp CCEEEEEC-BTTCCEEEEEC-SCCCHHHHHHHHHHHHTS--SCEEEE
T ss_pred CceEEEEE-ecCcEEEEECC-CCCCHHHHHHHHHHHhcc--cceEEE
Confidence 45666654 46789999998 789999999999999888 344443
No 143
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=57.46 E-value=5.5 Score=31.25 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=38.4
Q ss_pred EEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCCCceeEEeeecCC
Q 012310 25 LNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 25 L~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~gsTL~LvlRL~GG 83 (466)
+.++ ...||.+|...+ ++|.....+..||+.+..+..| ..++.|.+.+.+.||
T Consensus 25 ~~~~-~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~~~L-~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 25 IEWR-EGMKVRDILRAV----GFNTESAIAKVNGKVVLEDDEV-KDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCC-SSCCHHHHHHTT----TCSSCSSCEEETTEEECSSSCC-CSSCCCBCSCCCCCC
T ss_pred EECC-CCCcHHHHHHHh----CCCCcCEEEEECCEECCCCCCc-CCCCEEEEEcccccC
Confidence 3444 457899988764 4677666778899999877555 457888888887776
No 144
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=57.30 E-value=8.8 Score=33.56 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=29.7
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe
Q 012310 22 TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY 56 (466)
Q Consensus 22 T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf 56 (466)
..++.|. .+.++.+|+..|.+.+|||++.|||-.
T Consensus 57 ~~~~rv~-k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 57 YTVFKVL-KNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp CEEEECC-TTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred cceEEEe-ccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 3567776 689999999999999999999999864
No 145
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=57.16 E-value=15 Score=30.15 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=45.0
Q ss_pred cEEEEEEeCC------CCEEEEEecCCCCCHHHHHHHHHHhhC-CCCC---------Ce-------EEEecCeecC---C
Q 012310 10 ALQLFVKLLN------GKTTTLNFTTCHVYGHEIKNRIYEATK-IPTH---------LQ-------RLIYSGLQLK---D 63 (466)
Q Consensus 10 ~MqIfVKtld------GkT~tL~V~sPs~TVsdLK~rI~e~~G-IP~e---------~Q-------RLIfnGK~L~---D 63 (466)
+|+|.|+.|. |. ..+.++ ..||.+|.+.+..... +... .. .+..||+.+. .
T Consensus 3 mm~v~V~~fa~lr~~~g~-~~~~l~--~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~ 79 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGT-PELPLS--GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEG 79 (99)
T ss_dssp CCEEEEEECTHHHHHHSS-SEEEEE--CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTS
T ss_pred ceEEEEEEeHHHHHHhCC-CeEEEe--CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCC
Confidence 5788898764 32 234444 4699999999987631 1111 12 5667888773 2
Q ss_pred CCccccCCCceeEEeeecCC
Q 012310 64 RTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 64 sstLss~gsTL~LvlRL~GG 83 (466)
..+.-..++.|.+.+.+.||
T Consensus 80 ~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 80 LETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp TTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCEEEEECCCCCC
Confidence 22333457889898888776
No 146
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=57.12 E-value=13 Score=27.98 Aligned_cols=61 Identities=7% Similarity=0.015 Sum_probs=38.2
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCCCceeEE
Q 012310 11 LQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDHITFNLV 77 (466)
Q Consensus 11 MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~gsTL~Lv 77 (466)
|.|.|.+++|+.+ .++ ...|+.+|...|.... +....-...||+.+..+..|. .++.|.++
T Consensus 1 m~i~i~~p~g~~~--~~~-~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl~~~L~-~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEIK--RLP-QGATALDFAYSLHSDL--GDHCIGAKVNHKLVPLSYVLN-SGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCEE--EEC-TTCBHHHHHHHHCSHH--HHTEEEEEETTEECCTTCBCC-SSSBEEEE
T ss_pred CeEEEEcCCCCEE--EcC-CCCcHHHHHHHHhhcc--ccceEEEEECCEEeCCCcCcC-CCCEEEEE
Confidence 5677777789864 454 4679999988874321 222233456998887776664 35555554
No 147
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=54.98 E-value=25 Score=37.02 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=40.4
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCC--CCeEEEe
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPT--HLQRLIY 56 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~--e~QRLIf 56 (466)
..|.+.|.++||....+.+. +.+|+.+|.+.|+...||.. +.+-|.+
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~-~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITIN-SHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEEEEEEC-TTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeC-CCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 46889999999999999998 79999999999999999984 4555654
No 148
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=53.25 E-value=31 Score=29.03 Aligned_cols=44 Identities=7% Similarity=0.048 Sum_probs=36.4
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCC
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHL 51 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~ 51 (466)
+...+-|.|-+.||.+.+|.|+ ++.|+.+|.+.+..+.++..+.
T Consensus 6 ~~~k~vvkvf~~Dgssksi~V~-~~~Ta~dv~~~L~~K~~~~~~~ 49 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGACRSVEVA-AGATARHVCEMLVQRAHALSDE 49 (100)
T ss_dssp CCSCEEEEEEETTSCEEEEEEC-TTCCHHHHHHHHHCSSSCCCCC
T ss_pred cCCCEEEEEEecCCCEEEEEEC-CCCcHHHHHHHHHHHcCCCCCC
Confidence 4455677777789999999998 8999999999999998776543
No 149
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=48.52 E-value=65 Score=26.54 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=46.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe-cCeecCCCCcccc----CCCceeEEeeecCC
Q 012310 23 TTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY-SGLQLKDRTVISD----DHITFNLVLRLLGG 83 (466)
Q Consensus 23 ~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf-nGK~L~DsstLss----~gsTL~LvlRL~GG 83 (466)
..|+|+ .......+....++.+.+|+...-++. .|--+++.++-.. +++-|+|.+|-+=|
T Consensus 26 kvlsVP-E~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 26 KVLSVP-ESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred eEEecC-ccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 678887 567788888899999999998877776 5777888766433 78899999986533
No 150
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.50 E-value=38 Score=28.15 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=49.2
Q ss_pred CCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe---cCeecCCCCccccCC
Q 012310 8 PKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY---SGLQLKDRTVISDDH 71 (466)
Q Consensus 8 ~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf---nGK~L~DsstLss~g 71 (466)
..++.+.|..+.-+-..++|+ |..++.+|.-.|+++..+.++..-|.. ....|+-+..|.+++
T Consensus 8 E~TvRLvVNy~~tQKtVvRVS-P~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlg 73 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVS-PHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLG 73 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEEC-SSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHT
T ss_pred ccEEEEEEeecCcceeEEEeC-CCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhh
Confidence 357888888877777888996 999999999999999999998887774 344555566665554
No 151
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=47.54 E-value=11 Score=28.11 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=27.8
Q ss_pred HHhhhchhhhhHHHHhcccccCCchhhhhhhhh
Q 012310 416 EMEVLGLERLKSELQARGLKCGGTLQERAARLF 448 (466)
Q Consensus 416 ele~lg~~~lk~~l~~~glkcgGtl~era~Rlf 448 (466)
++..+-+.-||.+|..+||.+.|.=.+--.||-
T Consensus 4 ~~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~ 36 (51)
T 1h1j_S 4 DYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLI 36 (51)
T ss_dssp SGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHH
T ss_pred hHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 445667778999999999999999888888874
No 152
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=46.90 E-value=8.8 Score=31.01 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=29.0
Q ss_pred HHhhhchhhhhHHHHhcccccCCchhhhhhhhhh
Q 012310 416 EMEVLGLERLKSELQARGLKCGGTLQERAARLFL 449 (466)
Q Consensus 416 ele~lg~~~lk~~l~~~glkcgGtl~era~Rlf~ 449 (466)
++..+-+..||.+|..+||.+.|.=.+--.||-.
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~ 58 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRA 58 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHH
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 4556788889999999999999998888888853
No 153
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=44.14 E-value=11 Score=28.67 Aligned_cols=34 Identities=41% Similarity=0.472 Sum_probs=28.1
Q ss_pred HHhhhchhhhhHHHHhcccccCCchhhhhhhhhh
Q 012310 416 EMEVLGLERLKSELQARGLKCGGTLQERAARLFL 449 (466)
Q Consensus 416 ele~lg~~~lk~~l~~~glkcgGtl~era~Rlf~ 449 (466)
++..|-+.-||..|..+||.|.|+=++.-+||-.
T Consensus 9 ~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~ 42 (55)
T 2do1_A 9 ELHKLKLAELKQECLARGLETKGIKQDLIHRLQA 42 (55)
T ss_dssp CTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHH
T ss_pred CHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 3456777889999999999999998888888754
No 154
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=43.22 E-value=35 Score=31.85 Aligned_cols=60 Identities=22% Similarity=0.187 Sum_probs=41.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHhhCCCCC-CeEEEe---cC--eecCC-CCcccc----CCCceeEEeeecCC
Q 012310 23 TTLNFTTCHVYGHEIKNRIYEATKIPTH-LQRLIY---SG--LQLKD-RTVISD----DHITFNLVLRLLGG 83 (466)
Q Consensus 23 ~tL~V~sPs~TVsdLK~rI~e~~GIP~e-~QRLIf---nG--K~L~D-sstLss----~gsTL~LvlRL~GG 83 (466)
.++.++ ...||.+|+.+++..++||.+ ..||-. .+ .+|.+ +.+|.+ .+..|-|.+|...|
T Consensus 142 ~~~~~S-k~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 142 VTRRFS-KADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEC-TTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred eEEEEc-ccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 566675 789999999999999999997 677752 22 33544 345544 24566677776555
No 155
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=43.21 E-value=51 Score=31.03 Aligned_cols=60 Identities=18% Similarity=0.116 Sum_probs=41.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHhhCCCCC-CeEEEe-c----CeecCC-CCccccC----CCceeEEeeecCC
Q 012310 23 TTLNFTTCHVYGHEIKNRIYEATKIPTH-LQRLIY-S----GLQLKD-RTVISDD----HITFNLVLRLLGG 83 (466)
Q Consensus 23 ~tL~V~sPs~TVsdLK~rI~e~~GIP~e-~QRLIf-n----GK~L~D-sstLss~----gsTL~LvlRL~GG 83 (466)
+++.++ ...||.+|+.+++..++||.+ ..||-. + ..+|.+ +.+|.+. +..|-|.+|...|
T Consensus 154 ~~~~~S-k~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 154 LSCHFS-KADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEC-TTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred EEEEec-ccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 456665 789999999999999999997 688763 2 234554 3566542 4466677776544
No 156
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=42.53 E-value=71 Score=24.82 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=38.3
Q ss_pred EEEecCCCCCHHHHHHHHHHhhC------C-----CCCCeEEEecCeecCC---CCccccCCCceeEEeeecCC
Q 012310 24 TLNFTTCHVYGHEIKNRIYEATK------I-----PTHLQRLIYSGLQLKD---RTVISDDHITFNLVLRLLGG 83 (466)
Q Consensus 24 tL~V~sPs~TVsdLK~rI~e~~G------I-----P~e~QRLIfnGK~L~D---sstLss~gsTL~LvlRL~GG 83 (466)
.+.++ ...||.+|.+.+..... + ......+..||+.+.. ..+.-..++.|.+.+...||
T Consensus 18 ~~~~~-~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFN-GISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEES-SCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcC-CCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEeCCCCCC
Confidence 34555 35799999999987631 1 0133456779988752 22223457889888888776
No 157
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=40.75 E-value=1e+02 Score=26.45 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=33.4
Q ss_pred CCcEEEEEEeCC--CCEEEEEecCCCCCHHHHHHHHHHh--hCCCCC------CeEEEe----cCeecCC
Q 012310 8 PKALQLFVKLLN--GKTTTLNFTTCHVYGHEIKNRIYEA--TKIPTH------LQRLIY----SGLQLKD 63 (466)
Q Consensus 8 ~~~MqIfVKtld--GkT~tL~V~sPs~TVsdLK~rI~e~--~GIP~e------~QRLIf----nGK~L~D 63 (466)
..+|.++|-... +..+.+.|- ..+||.++|.+|.+. .|+|.+ ...|-+ .|+.|.|
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVL-dCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D 77 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVL-NCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSD 77 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEE-TTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCS
T ss_pred eEEEEEEEEecCCCCCceeeeee-ccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccc
Confidence 456777776553 345777775 578999999999865 355543 444554 3566665
No 158
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=36.95 E-value=42 Score=28.38 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=41.6
Q ss_pred cEEEEEEeCC------CCEEEEEecC---CCCCHHHHHHHHHHhhCCCCCCe--------------E-EEecCeecC---
Q 012310 10 ALQLFVKLLN------GKTTTLNFTT---CHVYGHEIKNRIYEATKIPTHLQ--------------R-LIYSGLQLK--- 62 (466)
Q Consensus 10 ~MqIfVKtld------GkT~tL~V~s---Ps~TVsdLK~rI~e~~GIP~e~Q--------------R-LIfnGK~L~--- 62 (466)
+|+|.|+.+. |+...+.++. ...||.+|...|.+.. |.... . ++.||+.+.
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 5888888654 3445566541 1148999999998764 11111 2 223554432
Q ss_pred CCCccccCCCceeEEeeecCCC
Q 012310 63 DRTVISDDHITFNLVLRLLGGK 84 (466)
Q Consensus 63 DsstLss~gsTL~LvlRL~GGK 84 (466)
.-.+.-..++.|.+.+.+-||-
T Consensus 82 gldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC-
T ss_pred CcccCCCCcCEEEEeCCCcccc
Confidence 1122224577788888888874
No 159
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=36.80 E-value=64 Score=35.14 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=40.1
Q ss_pred CcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCC-CeEEEe
Q 012310 9 KALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTH-LQRLIY 56 (466)
Q Consensus 9 ~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e-~QRLIf 56 (466)
..|.+.|.+++|....+.|. +.+|+.+|.+.|+...|+... .+-|.+
T Consensus 262 ~~i~~~V~llDgt~~~~~vd-s~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTD-SATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEEC-TTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEc-cCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 47889999999999999998 789999999999999998654 455654
No 160
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=35.98 E-value=83 Score=30.69 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=34.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeec
Q 012310 20 GKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQL 61 (466)
Q Consensus 20 GkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L 61 (466)
-..+.+.+. +..|+.+|+.+|+..++|+++.|.|++.+..+
T Consensus 321 ~~~~~~~~~-~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~ 361 (396)
T 4eut_A 321 MTAHKIYIH-SYNTATIFHELVYKQTKIISSNQELIYEGRRL 361 (396)
T ss_dssp TEEEEEEEC-TTCBHHHHHHHHHHHHCCCSTTEEEESSSSEE
T ss_pred ceEEEEEcC-chhHHHHHHHHHHHhcCCChhhhHHHhcCCCC
Confidence 345666775 78899999999999999999999999987443
No 161
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=35.51 E-value=64 Score=27.43 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=41.4
Q ss_pred CCCcEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEE---ecCee
Q 012310 7 SPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLI---YSGLQ 60 (466)
Q Consensus 7 s~~~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLI---fnGK~ 60 (466)
+...+...|-..+....++.++ ...|+.+|+..+.++.+...+.+.|+ ++|-.
T Consensus 6 ~sD~i~~~Vy~~Dhsy~tvr~~-v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk 61 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYVSVKAK-VSSIAQEILKVVAEKIQYAEEDLALVAITFSGEK 61 (104)
T ss_dssp CSSCCCEEEECSSSCEEEECCC-TTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCC
T ss_pred CCCceEEEEEeccCceEEEEEe-ccchHHHHHHHHHHHhcCCccceEEEEEccCCcE
Confidence 3445666677778888888886 68899999999999999887777776 56643
No 162
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=32.43 E-value=41 Score=36.86 Aligned_cols=48 Identities=27% Similarity=0.352 Sum_probs=38.8
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe-cCeecCCCCc
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY-SGLQLKDRTV 66 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf-nGK~L~Dsst 66 (466)
...+.+.+.+. +..|+.+|+..|.+.++||++.|.|++ +|..+.+...
T Consensus 319 ~~~~~~~~~i~-~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~ 367 (676)
T 3qa8_A 319 VSGRVHTYPVT-ENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQP 367 (676)
T ss_dssp SSSCCCEEECC-TTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSC
T ss_pred cccccceeecC-CCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcc
Confidence 34566778886 889999999999999999999999998 4555655533
No 163
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=32.25 E-value=1.2e+02 Score=30.79 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=43.1
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHH--HhhCCC---CCCeEEEe----cC--eecCCCCcccc----CC-----CceeEE
Q 012310 18 LNGKTTTLNFTTCHVYGHEIKNRIY--EATKIP---THLQRLIY----SG--LQLKDRTVISD----DH-----ITFNLV 77 (466)
Q Consensus 18 ldGkT~tL~V~sPs~TVsdLK~rI~--e~~GIP---~e~QRLIf----nG--K~L~DsstLss----~g-----sTL~Lv 77 (466)
++|...++.+. +++||.+|...|+ .+.|+. .+.+-|.+ .+ +.|.++.+|.. +. ..+++.
T Consensus 35 ~~~~~k~v~~d-~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v~~k~~~~~~~~~~~~~ 113 (392)
T 4eku_A 35 PGKNFKLVKCT-VQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEVQDKYECLHVEAEWRYD 113 (392)
T ss_dssp GGGEEEEEEEE-TTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHHHHHSTTTSCGGGEEEE
T ss_pred CCCCeEEEEeC-CCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHHHhhhhhccCCCceEEE
Confidence 78889999998 7899999999999 566753 34555543 22 56777766654 21 245666
Q ss_pred eeec
Q 012310 78 LRLL 81 (466)
Q Consensus 78 lRL~ 81 (466)
+|.+
T Consensus 114 fRvr 117 (392)
T 4eku_A 114 LQIR 117 (392)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 6664
No 164
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=31.36 E-value=93 Score=24.67 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=40.5
Q ss_pred EEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccCCCceeEE
Q 012310 12 QLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDDHITFNLV 77 (466)
Q Consensus 12 qIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~gsTL~Lv 77 (466)
+|+|.+++|..+.|. ...|+.|+-..|....+ -....-..||+.+..+..|. .+++|.++
T Consensus 7 ~i~v~tP~G~~~~lp---~GaT~~D~A~~Ih~~lg--~~~v~AkVNG~~v~L~~~L~-~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDVISLP---IGSTVIDFAYAIHSAVG--NRMIGAKVDGRIVPIDYKVK-TGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCEEEEE---TTCBHHHHHHHHCHHHH--HTEEEEEETTEEECTTCBCC-TTCBEEEE
T ss_pred eEEEECCCCCEEEec---CCCCHHHHHHHhhhhhh--cceEEEEECCEEcCCCcccC-CCCEEEEE
Confidence 688889999876653 46799999988865433 12233456999887777664 35555554
No 165
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.08 E-value=59 Score=27.03 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=42.6
Q ss_pred cEEEEEEeCCC-CEEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEEe--cCeecCCCCcccc-CCCceeEEee
Q 012310 10 ALQLFVKLLNG-KTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIY--SGLQLKDRTVISD-DHITFNLVLR 79 (466)
Q Consensus 10 ~MqIfVKtldG-kT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLIf--nGK~L~DsstLss-~gsTL~LvlR 79 (466)
.--+.|...+- ..+-|.. .++.+|+.+.+..+.|+....+|+. .|..+.++..+.. +..|+.++++
T Consensus 9 ~kpfkV~~~~Rs~k~GV~A----~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp~nT~lmvL~ 78 (91)
T 2eel_A 9 ARPFRVSNHDRSSRRGVMA----SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILE 78 (91)
T ss_dssp CEEEEEECTTSCCCEEEEE----SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSCSSEEEEEEE
T ss_pred CCCEEEecCCCCeEEeEEc----CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCCCCCEEEEEc
Confidence 34455554432 2244443 3799999999999999876677665 6888877543322 3567766664
No 166
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=29.97 E-value=92 Score=33.27 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=49.3
Q ss_pred cEEEE-EEeCCCC----EEEEEecCCCCCHHHHHHHHHHhhCCCCC-CeEEEe--c--C--eecCCCCcccc--------
Q 012310 10 ALQLF-VKLLNGK----TTTLNFTTCHVYGHEIKNRIYEATKIPTH-LQRLIY--S--G--LQLKDRTVISD-------- 69 (466)
Q Consensus 10 ~MqIf-VKtldGk----T~tL~V~sPs~TVsdLK~rI~e~~GIP~e-~QRLIf--n--G--K~L~DsstLss-------- 69 (466)
.++|+ |-..+|. ...|.+. +.+||.+|...|+++.+|... .+-|.+ . | ..|.++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~~~~~~~~~~~~ 84 (656)
T 2j0j_A 6 VLKVFHYFENSSEPTTWASIIRHG-DATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKFELA 84 (656)
T ss_dssp EEEEECCCCCSSCGGGCEEEEEEC-TTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSBHHHHHHHHTTT
T ss_pred hhhheEEeccCCCCCCceeEEEeC-CCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCcHHHHHhhhccc
Confidence 55666 6666777 8999997 899999999999999998553 344543 2 2 34666666554
Q ss_pred -CCCceeEEeeec
Q 012310 70 -DHITFNLVLRLL 81 (466)
Q Consensus 70 -~gsTL~LvlRL~ 81 (466)
....+++.+|++
T Consensus 85 ~~~~~~~~~~rvr 97 (656)
T 2j0j_A 85 HPPEEWKYELRIR 97 (656)
T ss_dssp SCTTSEEEEEEEC
T ss_pred CCCcceEEEEEEE
Confidence 234566666664
No 167
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=28.17 E-value=1.1e+02 Score=29.99 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=32.9
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCC
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHL 51 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~ 51 (466)
.+-|-|-+.+|.+.+|.|+ ++.|+.+|.+.+..+.+++...
T Consensus 31 k~ivkv~~~D~ss~~l~V~-~~~TA~dv~~~L~~k~~~~~~~ 71 (281)
T 4gmv_A 31 KLVIRVHMSDDSSKTMMVD-ERQTVRQVLDNLMDKSHCGYSL 71 (281)
T ss_dssp EEEEEEEETTSCEEEEEEE-TTCBHHHHHHHHHHHSCCCCCT
T ss_pred cEEEEEEecCCCEEEEEEC-CCCcHHHHHHHHHHhcCCCCCC
Confidence 4455555678999999998 8999999999999888765544
No 168
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=28.14 E-value=1.2e+02 Score=28.16 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=34.5
Q ss_pred cEEEEEEeCCCCEEEEEecCCCCCHHHHHHHHHHhhCCCCCCe
Q 012310 10 ALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQ 52 (466)
Q Consensus 10 ~MqIfVKtldGkT~tL~V~sPs~TVsdLK~rI~e~~GIP~e~Q 52 (466)
.+.|.|-+.+|.+.++.|+ ++.|+.+|.+.|..+.+++....
T Consensus 34 k~~v~v~~~d~~~k~i~v~-~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 34 KLVVKVHMDDSSTKSLMVD-ERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp EEEEEEECTTSCEEEEEEE-TTCBHHHHHHHHHHHHCCCCCTT
T ss_pred ceEEEEEcCCCceEEEEeC-CCCcHHHHHHHHHHHhCCCCCCC
Confidence 4555666778999999998 89999999999999999876543
No 169
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=27.67 E-value=1e+02 Score=25.96 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHhhCCCCC--CeEEE--ecCeecCCCCcccc-CCCceeEEee
Q 012310 32 VYGHEIKNRIYEATKIPTH--LQRLI--YSGLQLKDRTVISD-DHITFNLVLR 79 (466)
Q Consensus 32 ~TVsdLK~rI~e~~GIP~e--~QRLI--fnGK~L~DsstLss-~gsTL~LvlR 79 (466)
.|+.+|+.+.+..++|+.. ..+|+ ..|..+.++..+.. +..|+.++++
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEEC
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCCCCCEEEEEc
Confidence 4799999999999999764 35555 37999877644433 4667766664
No 170
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=23.24 E-value=59 Score=34.45 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=29.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhhCCCCCCeEEE
Q 012310 22 TTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLI 55 (466)
Q Consensus 22 T~tL~V~sPs~TVsdLK~rI~e~~GIP~e~QRLI 55 (466)
..++.+. .+.|+.+|+.+|++.+|+|++.|||-
T Consensus 37 ~~~~rv~-k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 37 YTVFKVL-KNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp CEEEEEE-TTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred cceEEEc-CcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 3577886 68999999999999999999999985
No 171
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=20.94 E-value=1.4e+02 Score=24.71 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHhhCCCCCCeEEEecCeecCCCCccccC----CCceeEEeee
Q 012310 31 HVYGHEIKNRIYEATKIPTHLQRLIYSGLQLKDRTVISDD----HITFNLVLRL 80 (466)
Q Consensus 31 s~TVsdLK~rI~e~~GIP~e~QRLIfnGK~L~DsstLss~----gsTL~LvlRL 80 (466)
..++..||..++.+++++.+...+...+.+|.+..+|.+. ...+.+.+-+
T Consensus 12 ~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 12 NEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp SSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred cCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 5678899999999999999988888888889998888764 2355665544
No 172
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=20.46 E-value=2e+02 Score=23.72 Aligned_cols=74 Identities=7% Similarity=0.004 Sum_probs=44.7
Q ss_pred CCCCCcEEEEEEeC-CCC--EEEEEecCCCCCHHHHHHHHHH--h-hCCCCCCeEEEecCeecCCCCccccCCCceeEEe
Q 012310 5 ATSPKALQLFVKLL-NGK--TTTLNFTTCHVYGHEIKNRIYE--A-TKIPTHLQRLIYSGLQLKDRTVISDDHITFNLVL 78 (466)
Q Consensus 5 ~~s~~~MqIfVKtl-dGk--T~tL~V~sPs~TVsdLK~rI~e--~-~GIP~e~QRLIfnGK~L~DsstLss~gsTL~Lvl 78 (466)
+|+-..|+|-|--. ..+ .+.+.++ ...||.++.....- . ..|......+-.||+.+..+..|. .|+.|.+..
T Consensus 7 ~~~~~~~~v~v~ya~p~rq~~~~~~v~-~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~-dGDRVEIyr 84 (97)
T 2hj1_A 7 HHSLNQINIEIAYAFPERYYLKSFQVD-EGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLK-EGDRIEIYR 84 (97)
T ss_dssp ----CEEEEEEEEEETTEEEEEEEEEE-TTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCC-TTCEEEECC
T ss_pred ccccceEEEEEEEeCCCCCEEEEEEcC-CCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCC-CCCEEEEEe
Confidence 34567788887643 333 4666776 57899999887642 1 123344566778898888666653 466665554
Q ss_pred ee
Q 012310 79 RL 80 (466)
Q Consensus 79 RL 80 (466)
.|
T Consensus 85 pl 86 (97)
T 2hj1_A 85 PL 86 (97)
T ss_dssp CC
T ss_pred cc
Confidence 43
Done!