Query 012311
Match_columns 466
No_of_seqs 358 out of 2452
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:17:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 2E-89 4.4E-94 687.0 41.1 414 23-449 9-446 (452)
2 PLN02533 probable purple acid 100.0 1.6E-82 3.5E-87 657.2 47.8 405 23-447 12-425 (427)
3 cd00839 MPP_PAPs purple acid p 100.0 3.3E-46 7.1E-51 370.6 31.1 275 157-440 2-294 (294)
4 PTZ00422 glideosome-associated 100.0 2.2E-35 4.9E-40 296.9 27.1 265 148-441 17-330 (394)
5 cd07378 MPP_ACP5 Homo sapiens 100.0 5.5E-33 1.2E-37 273.5 24.6 247 160-428 1-277 (277)
6 KOG2679 Purple (tartrate-resis 100.0 3.2E-27 6.9E-32 220.7 19.1 260 147-430 33-321 (336)
7 PF09423 PhoD: PhoD-like phosp 99.9 1.5E-26 3.3E-31 243.1 24.2 284 64-356 3-375 (453)
8 cd07395 MPP_CSTP1 Homo sapiens 99.9 3.1E-26 6.8E-31 223.8 22.3 229 158-423 3-260 (262)
9 COG3540 PhoD Phosphodiesterase 99.9 1.2E-24 2.6E-29 217.9 18.8 286 60-355 39-415 (522)
10 cd07402 MPP_GpdQ Enterobacter 99.9 1.7E-22 3.7E-27 194.5 18.5 216 161-414 1-237 (240)
11 cd07396 MPP_Nbla03831 Homo sap 99.9 1.3E-21 2.9E-26 191.8 18.2 198 160-383 1-247 (267)
12 PRK11148 cyclic 3',5'-adenosin 99.8 3.1E-19 6.6E-24 175.8 22.8 239 147-427 4-263 (275)
13 cd07401 MPP_TMEM62_N Homo sapi 99.8 2E-18 4.3E-23 168.1 18.3 183 162-358 2-210 (256)
14 cd07399 MPP_YvnB Bacillus subt 99.8 2.1E-18 4.5E-23 163.6 15.7 145 160-358 1-161 (214)
15 cd00842 MPP_ASMase acid sphing 99.7 1.5E-16 3.2E-21 158.3 13.9 189 165-357 43-260 (296)
16 PF00149 Metallophos: Calcineu 99.6 2E-16 4.3E-21 140.9 7.0 191 160-357 1-199 (200)
17 cd08163 MPP_Cdc1 Saccharomyces 99.6 3.1E-14 6.6E-19 138.5 16.9 163 180-358 39-228 (257)
18 TIGR03767 P_acnes_RR metalloph 99.6 4E-14 8.8E-19 145.4 13.9 90 265-357 290-391 (496)
19 PF14008 Metallophos_C: Iron/z 99.5 1.7E-14 3.6E-19 109.1 6.9 62 370-436 1-62 (62)
20 cd07383 MPP_Dcr2 Saccharomyces 99.5 2.5E-13 5.5E-18 127.2 15.8 145 159-357 2-175 (199)
21 cd07392 MPP_PAE1087 Pyrobaculu 99.5 1.2E-12 2.6E-17 120.7 14.4 165 162-357 1-172 (188)
22 cd07393 MPP_DR1119 Deinococcus 99.4 2.6E-12 5.7E-17 123.4 15.3 189 163-380 2-226 (232)
23 COG1409 Icc Predicted phosphoh 99.4 5.8E-12 1.3E-16 124.2 15.6 178 160-357 1-192 (301)
24 cd07400 MPP_YydB Bacillus subt 99.4 5.5E-12 1.2E-16 111.7 12.7 132 162-379 1-144 (144)
25 TIGR03729 acc_ester putative p 99.4 5.6E-12 1.2E-16 121.6 13.7 174 161-357 1-220 (239)
26 TIGR03768 RPA4764 metallophosp 99.2 1.1E-10 2.3E-15 119.2 14.0 91 265-356 291-409 (492)
27 cd07404 MPP_MS158 Microscilla 99.2 4.6E-11 1E-15 108.5 10.2 142 162-357 1-148 (166)
28 cd00840 MPP_Mre11_N Mre11 nucl 99.2 1.2E-10 2.5E-15 110.5 11.1 183 161-357 1-200 (223)
29 cd07388 MPP_Tt1561 Thermus the 99.1 1.5E-09 3.3E-14 103.2 16.2 178 158-357 3-190 (224)
30 cd07385 MPP_YkuE_C Bacillus su 99.1 5.2E-10 1.1E-14 106.3 10.4 160 159-357 1-165 (223)
31 KOG1432 Predicted DNA repair e 99.1 2.1E-08 4.6E-13 98.0 21.4 255 157-439 51-375 (379)
32 cd00838 MPP_superfamily metall 99.1 2.2E-09 4.9E-14 91.6 12.2 112 163-358 1-115 (131)
33 cd07389 MPP_PhoD Bacillus subt 99.0 5.5E-09 1.2E-13 99.8 12.5 143 161-303 1-188 (228)
34 PRK11340 phosphodiesterase Yae 98.8 9.6E-08 2.1E-12 93.9 14.7 158 158-356 48-212 (271)
35 cd07379 MPP_239FB Homo sapiens 98.7 7E-08 1.5E-12 84.6 10.3 114 161-357 1-115 (135)
36 PF12850 Metallophos_2: Calcin 98.7 8.3E-08 1.8E-12 85.5 10.4 153 160-414 1-155 (156)
37 PRK05340 UDP-2,3-diacylglucosa 98.7 1.7E-07 3.7E-12 90.5 12.8 174 161-357 2-198 (241)
38 cd07397 MPP_DevT Myxococcus xa 98.7 4.6E-07 9.9E-12 86.7 13.9 195 160-376 1-230 (238)
39 cd08166 MPP_Cdc1_like_1 unchar 98.5 3.7E-07 8.1E-12 84.6 9.0 102 185-357 42-146 (195)
40 cd07384 MPP_Cdc1_like Saccharo 98.5 6.5E-07 1.4E-11 81.9 9.9 56 179-237 38-101 (171)
41 cd08165 MPP_MPPE1 human MPPE1 98.4 7.1E-07 1.5E-11 80.4 8.5 50 184-236 37-89 (156)
42 cd00841 MPP_YfcE Escherichia c 98.4 1.9E-06 4.1E-11 77.1 10.0 131 161-383 1-133 (155)
43 TIGR00040 yfcE phosphoesterase 98.4 8.7E-06 1.9E-10 73.3 13.6 61 160-235 1-63 (158)
44 cd07403 MPP_TTHA0053 Thermus t 98.3 4.7E-06 1E-10 72.5 10.5 46 311-357 57-102 (129)
45 TIGR01854 lipid_A_lpxH UDP-2,3 98.3 1.7E-05 3.6E-10 76.2 14.8 72 163-236 2-81 (231)
46 cd07394 MPP_Vps29 Homo sapiens 98.3 0.00012 2.7E-09 67.3 18.8 167 161-430 1-171 (178)
47 cd00845 MPP_UshA_N_like Escher 98.2 1.9E-05 4.1E-10 76.6 13.5 174 160-359 1-207 (252)
48 COG1408 Predicted phosphohydro 98.2 8.9E-06 1.9E-10 80.3 10.8 75 157-237 42-119 (284)
49 TIGR00583 mre11 DNA repair pro 98.2 0.00011 2.4E-09 76.0 19.0 107 310-440 201-307 (405)
50 PF14582 Metallophos_3: Metall 98.2 1.1E-05 2.4E-10 75.3 9.7 175 159-356 5-216 (255)
51 cd08164 MPP_Ted1 Saccharomyces 98.2 3.1E-06 6.7E-11 78.4 6.0 49 185-237 44-112 (193)
52 COG2129 Predicted phosphoester 98.2 0.00011 2.3E-09 68.9 15.9 171 159-357 3-186 (226)
53 COG1768 Predicted phosphohydro 98.1 4E-05 8.6E-10 68.8 12.1 184 162-379 19-219 (230)
54 KOG3770 Acid sphingomyelinase 98.1 2.7E-05 5.8E-10 82.0 12.6 174 176-356 199-402 (577)
55 KOG3662 Cell division control 98.1 2E-05 4.3E-10 80.3 10.9 115 157-285 46-182 (410)
56 cd07410 MPP_CpdB_N Escherichia 98.0 0.00016 3.5E-09 71.2 15.5 87 266-359 128-231 (277)
57 cd07398 MPP_YbbF-LpxH Escheric 98.0 2.7E-05 5.9E-10 73.5 9.2 196 163-379 1-216 (217)
58 cd07406 MPP_CG11883_N Drosophi 98.0 0.00015 3.2E-09 70.8 13.7 173 160-358 1-207 (257)
59 cd07412 MPP_YhcR_N Bacillus su 97.9 0.00021 4.6E-09 70.9 13.8 92 267-360 138-243 (288)
60 cd07382 MPP_DR1281 Deinococcus 97.9 0.00088 1.9E-08 65.1 16.9 190 161-383 1-201 (255)
61 cd07411 MPP_SoxB_N Thermus the 97.8 0.0003 6.6E-09 68.9 13.6 155 178-358 42-219 (264)
62 TIGR00619 sbcd exonuclease Sbc 97.8 5.4E-05 1.2E-09 73.7 7.7 73 160-236 1-88 (253)
63 COG0420 SbcD DNA repair exonuc 97.7 4.5E-05 9.8E-10 79.0 5.9 73 160-236 1-88 (390)
64 cd07408 MPP_SA0022_N Staphyloc 97.7 0.00041 8.8E-09 67.7 12.3 178 160-359 1-214 (257)
65 TIGR00282 metallophosphoestera 97.6 0.0061 1.3E-07 59.6 19.0 197 160-385 1-206 (266)
66 PRK10966 exonuclease subunit S 97.5 0.00024 5.2E-09 73.9 8.3 73 160-236 1-87 (407)
67 PRK09453 phosphodiesterase; Pr 97.5 0.00026 5.6E-09 65.3 6.9 75 160-236 1-76 (182)
68 PHA02546 47 endonuclease subun 97.5 0.00034 7.4E-09 71.1 8.1 74 160-236 1-89 (340)
69 PRK09419 bifunctional 2',3'-cy 97.4 0.0023 4.9E-08 75.3 15.5 190 157-359 658-883 (1163)
70 COG0737 UshA 5'-nucleotidase/2 97.4 0.0032 7E-08 67.7 15.0 189 153-358 20-247 (517)
71 cd07407 MPP_YHR202W_N Saccharo 97.3 0.012 2.7E-07 58.1 17.2 183 158-358 4-231 (282)
72 cd07391 MPP_PF1019 Pyrococcus 97.3 0.00035 7.6E-09 63.8 5.4 49 184-236 40-88 (172)
73 cd07409 MPP_CD73_N CD73 ecto-5 97.2 0.0043 9.3E-08 61.3 12.2 80 266-359 130-219 (281)
74 cd07405 MPP_UshA_N Escherichia 97.1 0.0059 1.3E-07 60.5 11.8 51 307-359 172-222 (285)
75 TIGR00024 SbcD_rel_arch putati 96.9 0.0022 4.8E-08 61.2 6.8 69 160-235 15-101 (225)
76 PRK09558 ushA bifunctional UDP 96.8 0.018 3.9E-07 62.4 13.8 189 157-358 32-257 (551)
77 PF00041 fn3: Fibronectin type 96.8 0.0069 1.5E-07 47.4 7.7 70 58-139 2-75 (85)
78 COG2908 Uncharacterized protei 96.8 0.0047 1E-07 58.6 7.8 185 164-381 2-216 (237)
79 PHA02239 putative protein phos 96.7 0.003 6.6E-08 60.7 6.4 69 161-236 2-73 (235)
80 COG0622 Predicted phosphoester 96.5 0.036 7.8E-07 50.6 11.1 87 160-283 2-89 (172)
81 PRK04036 DNA polymerase II sma 96.5 0.009 2E-07 63.9 8.3 80 157-236 241-343 (504)
82 cd07424 MPP_PrpA_PrpB PrpA and 96.4 0.0041 8.9E-08 58.5 4.9 61 161-236 2-67 (207)
83 cd07423 MPP_PrpE Bacillus subt 96.3 0.0058 1.3E-07 58.7 5.2 68 161-236 2-80 (234)
84 PRK00166 apaH diadenosine tetr 96.2 0.0067 1.4E-07 59.7 5.3 66 161-236 2-69 (275)
85 PRK13625 bis(5'-nucleosyl)-tet 96.2 0.012 2.5E-07 57.1 6.9 65 161-236 2-79 (245)
86 TIGR01530 nadN NAD pyrophospha 96.2 0.1 2.3E-06 56.5 14.8 76 266-360 129-220 (550)
87 cd07386 MPP_DNA_pol_II_small_a 96.1 0.011 2.4E-07 57.0 6.3 74 163-236 2-94 (243)
88 cd08162 MPP_PhoA_N Synechococc 96.1 0.082 1.8E-06 53.1 12.5 39 307-359 206-245 (313)
89 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.1 0.0067 1.5E-07 59.3 4.5 176 162-357 1-227 (262)
90 cd07390 MPP_AQ1575 Aquifex aeo 96.0 0.017 3.6E-07 52.5 6.3 41 185-236 42-82 (168)
91 COG1407 Predicted ICC-like pho 95.9 0.019 4.2E-07 54.6 6.7 73 160-236 20-110 (235)
92 PRK11907 bifunctional 2',3'-cy 95.9 0.24 5.3E-06 55.8 16.0 58 297-359 298-355 (814)
93 PRK09968 serine/threonine-spec 95.8 0.012 2.7E-07 55.9 4.7 64 161-236 16-81 (218)
94 cd07425 MPP_Shelphs Shewanella 95.5 0.019 4.2E-07 54.1 4.9 63 163-236 1-80 (208)
95 cd07413 MPP_PA3087 Pseudomonas 95.4 0.022 4.8E-07 54.3 4.9 67 162-236 1-76 (222)
96 cd07387 MPP_PolD2_C PolD2 (DNA 95.3 0.47 1E-05 46.2 13.7 138 162-303 2-176 (257)
97 PRK11439 pphA serine/threonine 95.3 0.024 5.2E-07 53.9 4.7 64 161-236 18-83 (218)
98 PRK09419 bifunctional 2',3'-cy 95.0 0.31 6.8E-06 57.6 14.0 49 307-360 233-282 (1163)
99 cd07421 MPP_Rhilphs Rhilph pho 94.9 0.05 1.1E-06 53.7 5.9 68 161-236 3-80 (304)
100 cd00144 MPP_PPP_family phospho 94.9 0.041 9E-07 52.0 5.3 62 164-236 2-68 (225)
101 COG1692 Calcineurin-like phosp 94.9 3.2 7E-05 39.8 17.6 193 160-382 1-202 (266)
102 cd07422 MPP_ApaH Escherichia c 94.8 0.041 8.9E-07 53.6 5.0 64 163-236 2-67 (257)
103 KOG2863 RNA lariat debranching 94.7 0.076 1.6E-06 53.0 6.6 109 160-283 1-125 (456)
104 PRK09418 bifunctional 2',3'-cy 94.6 1.3 2.8E-05 50.0 16.5 49 307-361 243-292 (780)
105 KOG2310 DNA repair exonuclease 94.4 0.096 2.1E-06 55.0 6.8 45 157-201 11-68 (646)
106 KOG0196 Tyrosine kinase, EPH ( 94.4 0.19 4.1E-06 55.3 9.2 86 57-153 441-537 (996)
107 cd07381 MPP_CapA CapA and rela 93.7 0.27 5.8E-06 47.2 8.1 86 267-358 122-219 (239)
108 KOG4221 Receptor mediating net 93.5 0.15 3.2E-06 58.2 6.6 81 57-152 617-712 (1381)
109 TIGR00668 apaH bis(5'-nucleosy 93.5 0.11 2.3E-06 51.2 4.9 66 161-236 2-69 (279)
110 COG5555 Cytolysin, a secreted 93.5 0.092 2E-06 50.9 4.3 169 188-357 129-333 (392)
111 cd00063 FN3 Fibronectin type 3 93.4 0.63 1.4E-05 35.6 8.5 69 59-139 4-76 (93)
112 TIGR01390 CycNucDiestase 2',3' 93.3 1.4 3.1E-05 48.5 13.8 47 307-359 194-241 (626)
113 PF09587 PGA_cap: Bacterial ca 93.1 2.5 5.5E-05 40.8 13.8 61 292-358 168-228 (250)
114 smart00060 FN3 Fibronectin typ 92.6 0.94 2E-05 33.4 8.2 71 59-139 4-76 (83)
115 PF13277 YmdB: YmdB-like prote 92.0 2.4 5.2E-05 40.9 11.8 177 178-384 19-200 (253)
116 PRK09420 cpdB bifunctional 2', 91.8 6.8 0.00015 43.5 16.7 47 307-359 217-264 (649)
117 COG4186 Predicted phosphoester 91.4 0.5 1.1E-05 42.0 5.8 65 162-236 6-86 (186)
118 cd07416 MPP_PP2B PP2B, metallo 91.4 0.34 7.3E-06 48.5 5.5 65 161-236 44-114 (305)
119 cd07420 MPP_RdgC Drosophila me 91.1 0.36 7.8E-06 48.6 5.4 65 161-236 52-123 (321)
120 smart00156 PP2Ac Protein phosp 90.6 0.46 1E-05 46.7 5.6 65 161-236 29-99 (271)
121 smart00854 PGA_cap Bacterial c 89.8 1.8 3.9E-05 41.5 8.9 56 297-358 162-217 (239)
122 cd07415 MPP_PP2A_PP4_PP6 PP2A, 89.6 0.53 1.1E-05 46.7 5.0 21 335-355 214-234 (285)
123 cd07414 MPP_PP1_PPKL PP1, PPKL 89.1 0.62 1.3E-05 46.4 5.1 21 335-355 222-242 (293)
124 PTZ00239 serine/threonine prot 88.2 0.78 1.7E-05 45.9 5.1 21 335-355 215-235 (303)
125 cd07418 MPP_PP7 PP7, metalloph 88.2 0.81 1.8E-05 47.0 5.4 21 335-355 273-293 (377)
126 cd07380 MPP_CWF19_N Schizosacc 87.8 0.47 1E-05 42.3 3.0 64 163-234 1-68 (150)
127 PTZ00480 serine/threonine-prot 87.0 0.94 2E-05 45.6 4.9 21 335-355 231-251 (320)
128 cd07417 MPP_PP5_C PP5, C-termi 86.4 1.1 2.4E-05 45.0 5.1 21 335-355 233-253 (316)
129 PTZ00244 serine/threonine-prot 86.0 0.86 1.9E-05 45.3 4.0 21 335-355 224-244 (294)
130 cd07419 MPP_Bsu1_C Arabidopsis 85.9 1.4 3.1E-05 44.1 5.7 21 335-355 242-262 (311)
131 KOG3513 Neural cell adhesion m 85.8 3.4 7.4E-05 47.4 9.0 72 57-139 821-896 (1051)
132 COG1311 HYS2 Archaeal DNA poly 83.7 3.1 6.7E-05 43.7 6.9 80 157-236 223-321 (481)
133 PRK10301 hypothetical protein; 82.2 24 0.00053 30.3 10.9 32 118-149 86-122 (124)
134 KOG4221 Receptor mediating net 80.5 6.8 0.00015 45.5 8.5 95 64-167 527-629 (1381)
135 KOG4419 5' nucleotidase [Nucle 78.9 8.1 0.00017 41.6 8.1 55 291-356 211-267 (602)
136 PF07803 GSG-1: GSG1-like prot 76.6 12 0.00026 31.6 6.9 24 1-24 3-26 (118)
137 PF01108 Tissue_fac: Tissue fa 76.6 20 0.00044 29.5 8.6 71 58-140 24-99 (107)
138 PF09294 Interfer-bind: Interf 73.4 17 0.00037 29.6 7.3 66 58-139 5-86 (106)
139 KOG3947 Phosphoesterases [Gene 73.2 7.1 0.00015 38.1 5.4 64 158-238 60-128 (305)
140 KOG3325 Membrane coat complex 70.3 41 0.00089 29.9 8.9 85 337-440 98-182 (183)
141 PF07172 GRP: Glycine rich pro 67.1 5.2 0.00011 32.7 2.7 9 1-9 1-9 (95)
142 KOG4258 Insulin/growth factor 66.3 19 0.00042 40.4 7.5 111 58-169 488-624 (1025)
143 cd02850 Cellulase_N_term Cellu 66.2 56 0.0012 25.9 8.5 24 117-140 55-79 (86)
144 PF04042 DNA_pol_E_B: DNA poly 65.2 4.8 0.0001 37.5 2.5 77 162-238 1-93 (209)
145 KOG3513 Neural cell adhesion m 58.3 48 0.001 38.5 9.1 93 51-154 612-715 (1051)
146 PF10179 DUF2369: Uncharacteri 54.7 37 0.0008 33.8 6.7 21 118-138 13-33 (300)
147 PF07353 Uroplakin_II: Uroplak 48.5 18 0.00039 32.3 3.0 33 122-154 104-141 (184)
148 KOG0196 Tyrosine kinase, EPH ( 42.9 98 0.0021 35.0 8.1 97 32-139 315-417 (996)
149 KOG0372 Serine/threonine speci 42.2 37 0.0008 32.8 4.2 67 162-236 45-114 (303)
150 PF10179 DUF2369: Uncharacteri 41.2 1.9E+02 0.0042 28.9 9.3 20 121-140 261-280 (300)
151 KOG0374 Serine/threonine speci 41.2 32 0.00069 34.9 3.9 21 335-355 233-253 (331)
152 PTZ00235 DNA polymerase epsilo 40.1 1.1E+02 0.0023 30.4 7.3 80 157-236 25-122 (291)
153 PRK13792 lysozyme inhibitor; P 37.8 1.5E+02 0.0032 25.7 6.9 23 58-82 43-65 (127)
154 cd02856 Glycogen_debranching_e 37.1 43 0.00093 27.4 3.5 24 116-139 43-66 (103)
155 cd02852 Isoamylase_N_term Isoa 37.0 42 0.00091 28.2 3.5 24 116-139 47-70 (119)
156 KOG0371 Serine/threonine prote 35.5 48 0.001 32.3 3.9 67 162-236 62-131 (319)
157 TIGR01165 cbiN cobalt transpor 34.2 53 0.0012 26.6 3.4 12 43-54 52-63 (91)
158 cd02853 MTHase_N_term Maltooli 32.8 53 0.0011 25.8 3.3 23 117-140 39-61 (85)
159 COG4856 Uncharacterized protei 32.6 88 0.0019 32.1 5.4 33 42-79 55-87 (403)
160 cd02860 Pullulanase_N_term Pul 31.8 55 0.0012 26.5 3.3 25 115-139 44-68 (100)
161 COG2248 Predicted hydrolase (m 30.2 1.7E+02 0.0037 28.5 6.6 76 158-236 175-250 (304)
162 COG4259 Uncharacterized protei 30.1 62 0.0013 26.9 3.2 29 1-32 1-29 (121)
163 PF13473 Cupredoxin_1: Cupredo 29.9 1E+02 0.0023 25.0 4.7 64 57-140 32-95 (104)
164 PF14030 DUF4245: Protein of u 28.8 3.9E+02 0.0085 24.2 8.6 34 59-96 69-102 (169)
165 PF09949 DUF2183: Uncharacteri 27.8 90 0.002 25.7 3.9 25 161-187 66-90 (100)
166 PRK02898 cobalt transport prot 25.6 1E+02 0.0022 25.5 3.7 24 1-24 1-24 (100)
167 PF05984 Cytomega_UL20A: Cytom 25.4 1.7E+02 0.0036 23.3 4.7 9 60-68 48-56 (100)
168 PF15284 PAGK: Phage-encoded v 24.4 76 0.0016 23.6 2.5 22 1-22 1-23 (61)
169 KOG0373 Serine/threonine speci 23.2 1.3E+02 0.0027 28.7 4.3 64 162-236 48-117 (306)
170 KOG4367 Predicted Zn-finger pr 22.8 1.7E+02 0.0036 30.6 5.4 77 51-139 430-512 (699)
171 COG4752 Uncharacterized protei 22.7 79 0.0017 28.0 2.7 24 291-317 119-142 (190)
172 PF05927 Penaeidin: Penaeidin; 22.7 39 0.00084 25.6 0.7 26 10-36 3-33 (73)
173 KOG4222 Axon guidance receptor 22.5 1.8E+02 0.0039 34.3 6.1 78 56-139 746-826 (1281)
174 TIGR03000 plancto_dom_1 Planct 22.2 1.8E+02 0.0039 22.8 4.3 24 116-139 25-48 (75)
175 COG2372 CopC Uncharacterized p 22.0 1.3E+02 0.0029 25.9 3.9 13 57-69 44-56 (127)
176 PF02922 CBM_48: Carbohydrate- 21.7 1.1E+02 0.0023 23.7 3.2 25 116-140 47-73 (85)
177 PF05423 Mycobact_memb: Mycoba 21.2 1.7E+02 0.0038 25.7 4.6 26 56-81 47-72 (140)
178 COG3562 KpsS Capsule polysacch 21.0 2.5E+02 0.0054 28.6 6.1 79 291-381 250-330 (403)
179 COG4594 FecB ABC-type Fe3+-cit 20.6 1.2E+02 0.0026 29.6 3.6 23 177-199 125-147 (310)
180 PF11337 DUF3139: Protein of u 20.5 90 0.0019 24.7 2.5 9 1-9 1-9 (85)
181 PF13205 Big_5: Bacterial Ig-l 20.4 1.5E+02 0.0032 23.8 3.9 16 125-140 70-85 (107)
182 COG3317 NlpB Uncharacterized l 20.2 1.4E+02 0.0031 30.1 4.3 21 1-21 1-21 (342)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-89 Score=687.04 Aligned_cols=414 Identities=39% Similarity=0.611 Sum_probs=367.8
Q ss_pred ccCCCCCcccccCCCCCccCcCCCCcccccCCCCCCCceEEEeeecCCCCcEEEEEEcCCCCCCcEEEEeecCCCC----
Q 012311 23 NGGSAGITSKFIRTEWPSIDIPLDNEAFAVPKGHNSPQQVHITQGDYDGKAVIISWVTPHEPGPSTVSYGTSADKF---- 98 (466)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~P~qv~lt~~~~~~~~~~V~W~t~~~~~~~~V~yg~~~~~~---- 98 (466)
..|++|.++++.|...++..|+.++.++..|.+.+.|+||||++++.. ++|+|+|+|.+.. .+.|+||+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peQvhlS~~~~~-~~m~VswvT~~~~-~~~V~Yg~~~~~~~~~~ 86 (452)
T KOG1378|consen 9 SEINPKHTLHDINPLPGTLHLLSESEQLTFPSVVNSPEQVHLSFTDNL-NEMRVSWVTGDGE-ENVVRYGEVKDKLDNSA 86 (452)
T ss_pred eeccCCCccccccccCcccccccccccccCcccCCCCCeEEEeccCCC-CcEEEEEeCCCCC-CceEEEeecCCCccccc
Confidence 568999999999999999999999988999999999999999999875 4999999999753 4999999876652
Q ss_pred -ceEEEeEEEEeeeeccccceEEEEEecCCCCCCEEEEEeccC-CccceEEEECCCCCCCCCCeEEEEEccCCCCCCcHH
Q 012311 99 -DFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYKIGSG-DSSREFWFQTPPKIDPDASYKFGIIGDLGQTYNSLS 176 (466)
Q Consensus 99 -~~~a~g~~~~y~~~~~~~~~~h~v~l~gL~P~T~Y~Yrv~~~-~~s~~~~F~T~p~~g~~~~~~f~v~GD~g~~~~~~~ 176 (466)
...+++.+..|...+++++++|+|+|++|+|+|+||||||++ .||++++|+|+| +++.+.+|+++||+|.++....
T Consensus 87 ~~~~~~~~~~~y~~~~~~sg~ih~~~~~~L~~~t~YyY~~Gs~~~wS~~f~F~t~p--~~~~~~~~~i~GDlG~~~~~~s 164 (452)
T KOG1378|consen 87 ARGMTEAWTDGYANGWRDSGYIHDAVMKNLEPNTRYYYQVGSDLKWSEIFSFKTPP--GQDSPTRAAIFGDMGCTEPYTS 164 (452)
T ss_pred cccceEEEecccccccceeeeEeeeeecCCCCCceEEEEeCCCCCcccceEeECCC--CccCceeEEEEccccccccccc
Confidence 234445555555556899999999999999999999999997 589999999999 3458999999999999998888
Q ss_pred HHHHHHHh-CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceeeccCcCCccccccccccccc
Q 012311 177 TLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYP 255 (466)
Q Consensus 177 tl~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~ 255 (466)
++.++.++ ++|+|||+||++|++++.+ .+||+|++++||+++.+|||++.||||+++.+.. +|.+|.+||.
T Consensus 165 ~~~~~~~~~k~d~vlhiGDlsYa~~~~n----~~wD~f~r~vEp~As~vPymv~~GNHE~d~~~~~----~F~~y~~Rf~ 236 (452)
T KOG1378|consen 165 TLRNQEENLKPDAVLHIGDLSYAMGYSN----WQWDEFGRQVEPIASYVPYMVCSGNHEIDWPPQP----CFVPYSARFN 236 (452)
T ss_pred hHhHHhcccCCcEEEEecchhhcCCCCc----cchHHHHhhhhhhhccCceEEecccccccCCCcc----cccccceeec
Confidence 88888887 5999999999999998742 6999999999999999999999999999976543 6999999999
Q ss_pred CCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCC--CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCc-ccccCH
Q 012311 256 TPHLASKSSSPLWYAIRRASAHIIVLSSYSPFV--KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEA-HFMEGE 332 (466)
Q Consensus 256 ~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~--~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~-h~~~~~ 332 (466)
||.+++++..++|||||+|+||||+|+|+.+++ ++.+|++||++||++++|+++||+||++|+|||+++.. |+++++
T Consensus 237 mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~ 316 (452)
T KOG1378|consen 237 MPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGE 316 (452)
T ss_pred cCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchHHHHHHHHHHHhcccCCCeEEEEecccceecCCchhhccCc
Confidence 999998888899999999999999999998864 57899999999999999877999999999999998875 788887
Q ss_pred --HHHHHHHHHHHHcCCcEEEeccccee------cCCcc------cccCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCcc
Q 012311 333 --SMRAAFESWFVRYKVDYRISNLHYNI------SSGDC------FPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYS 398 (466)
Q Consensus 333 --~~r~~l~~ll~~y~Vd~~~~gh~~~~------~~~~~------~~~~~~~g~vyiv~G~gG~~~~~~~~~~~~~p~~s 398 (466)
.||..||+||.+||||++++||.|.+ .|.+| .++.+++|||||++|+||+.++++..+ .+||+||
T Consensus 317 ~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~-~~~p~~S 395 (452)
T KOG1378|consen 317 FESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFS-SPQPEWS 395 (452)
T ss_pred chhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCccc-CCCCccc
Confidence 89999999999999999999998753 34443 456799999999999999999987654 4899999
Q ss_pred ceeeCcccEEEEEEecCCeEEEEEEEcCCCceeeeeeEEEEecccCChhhh
Q 012311 399 AFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHNQYWASNRRR 449 (466)
Q Consensus 399 a~~~~~~G~~~l~v~n~t~l~~~~~~~~dg~~~~~D~~~i~k~~~~~~~~~ 449 (466)
+||+++|||++|+|+|+||+.|+|++|.|++.++.|+|||.|+++.+....
T Consensus 396 a~R~~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~k~~~~~~~~~ 446 (452)
T KOG1378|consen 396 AFREGDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLIKDYRDMVVGV 446 (452)
T ss_pred ccccccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEEEcccCcccccc
Confidence 999999999999999999999999999888777899999999999877653
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=1.6e-82 Score=657.16 Aligned_cols=405 Identities=38% Similarity=0.640 Sum_probs=349.4
Q ss_pred ccCCCCCcccccCCCCCccCcCCCCcccccCCCCCCCceEEEeeecCCCCcEEEEEEcCCCCCCcEEEEeecCCCCceEE
Q 012311 23 NGGSAGITSKFIRTEWPSIDIPLDNEAFAVPKGHNSPQQVHITQGDYDGKAVIISWVTPHEPGPSTVSYGTSADKFDFTA 102 (466)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~P~qv~lt~~~~~~~~~~V~W~t~~~~~~~~V~yg~~~~~~~~~a 102 (466)
..|.+|.+.+|+|++...+.+++... ++....|+||||++++ .++|+|+|.|.+. ..+.|+||++++.+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~P~qvhls~~~--~~~m~V~W~T~~~-~~~~V~yG~~~~~l~~~a 84 (427)
T PLN02533 12 LIVLAGNVLSYDRPGTRKNLVIHPDN----EDDPTHPDQVHISLVG--PDKMRISWITQDS-IPPSVVYGTVSGKYEGSA 84 (427)
T ss_pred HhhhccCcccccCCCccccccccccC----CCCCCCCceEEEEEcC--CCeEEEEEECCCC-CCCEEEEecCCCCCcceE
Confidence 34667799999999766655544321 2345789999999996 4799999999964 568999999999999999
Q ss_pred EeEEEEeee-eccccceEEEEEecCCCCCCEEEEEeccCCccceEEEECCCCCCCCCCeEEEEEccCCCCCCcHHHHHHH
Q 012311 103 EGTVNNYTF-YKYKSGYIHQCLVDGLEYDTKYYYKIGSGDSSREFWFQTPPKIDPDASYKFGIIGDLGQTYNSLSTLEHY 181 (466)
Q Consensus 103 ~g~~~~y~~-~~~~~~~~h~v~l~gL~P~T~Y~Yrv~~~~~s~~~~F~T~p~~g~~~~~~f~v~GD~g~~~~~~~tl~~~ 181 (466)
.|++++|++ ..+.++++|+|+|+||+|+|+|+||||...+|++++|+|+|. ..++||+++||+|.+.....+++++
T Consensus 85 ~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T~Y~Yrvg~~~~s~~~~F~T~p~---~~~~~f~v~GDlG~~~~~~~tl~~i 161 (427)
T PLN02533 85 NGTSSSYHYLLIYRSGQINDVVIGPLKPNTVYYYKCGGPSSTQEFSFRTPPS---KFPIKFAVSGDLGTSEWTKSTLEHV 161 (427)
T ss_pred EEEEEEEeccccccCCeEEEEEeCCCCCCCEEEEEECCCCCccceEEECCCC---CCCeEEEEEEeCCCCcccHHHHHHH
Confidence 999988875 346789999999999999999999999877789999999986 3689999999999877777788898
Q ss_pred HHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceeeccCcCCcccccccccccccCCCCCC
Q 012311 182 MESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS 261 (466)
Q Consensus 182 ~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~ 261 (466)
.+.+|||||++||++|+++. +.+||.|++.++++++.+|+|+++||||.+..+.. ....|..|.+||.||.+++
T Consensus 162 ~~~~pD~vl~~GDl~y~~~~-----~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~-~~~~f~~y~~rf~mP~~~~ 235 (427)
T PLN02533 162 SKWDYDVFILPGDLSYANFY-----QPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPIL-HPEKFTAYNARWRMPFEES 235 (427)
T ss_pred HhcCCCEEEEcCccccccch-----HHHHHHHHHHhhhHhhcCceEEeCccccccccccc-cCcCccchhhcccCCcccc
Confidence 88899999999999998654 68999999999999999999999999998754321 1235788999999998877
Q ss_pred CCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCccccc--CHHHHHHHH
Q 012311 262 KSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFME--GESMRAAFE 339 (466)
Q Consensus 262 ~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~--~~~~r~~l~ 339 (466)
+...+.||||++|++|||+||++.++....+|++||+++|++++|+++||+||++|+|+|+++..|..+ ...+|+.|+
T Consensus 236 g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le 315 (427)
T PLN02533 236 GSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESME 315 (427)
T ss_pred CCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHH
Confidence 777889999999999999999998887789999999999999988889999999999999987655433 245899999
Q ss_pred HHHHHcCCcEEEecccceec------CCcccccCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEe
Q 012311 340 SWFVRYKVDYRISNLHYNIS------SGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIK 413 (466)
Q Consensus 340 ~ll~~y~Vd~~~~gh~~~~~------~~~~~~~~~~~g~vyiv~G~gG~~~~~~~~~~~~~p~~sa~~~~~~G~~~l~v~ 413 (466)
+||++|+||++++||.|.+. ++. .+++||+|||+|+||+.+++...+.+++|+||+||+.+|||++|+|.
T Consensus 316 ~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~----~~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s~~r~~~~G~~~l~v~ 391 (427)
T PLN02533 316 TLLYKARVDLVFAGHVHAYERFDRVYQGK----TDKCGPVYITIGDGGNREGLATKYIDPKPDISLFREASFGHGQLNVV 391 (427)
T ss_pred HHHHHhCCcEEEecceecccccccccCCc----cCCCCCEEEEeCCCccccccccccCCCCCCceeEEeccCCEEEEEEE
Confidence 99999999999999998653 343 36789999999999999988767778899999999999999999999
Q ss_pred cCCeEEEEEEEcCCCceeeeeeEEEEecccCChh
Q 012311 414 NRTHAFYHWNRNDDGKKVATDSFILHNQYWASNR 447 (466)
Q Consensus 414 n~t~l~~~~~~~~dg~~~~~D~~~i~k~~~~~~~ 447 (466)
|.|||+|+|++|+||+.++.|+|||.|-...|.+
T Consensus 392 n~t~l~~~~~~~~~~~~~~~D~~~i~~~~~~~~~ 425 (427)
T PLN02533 392 DANTMEWTWHRNDDDQSVASDSVWLKSLLTEPGC 425 (427)
T ss_pred cCCeEEEEEEecCCCCceeeeEEEEEeccCCCcc
Confidence 9999999999999997667999999998766554
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=3.3e-46 Score=370.57 Aligned_cols=275 Identities=43% Similarity=0.769 Sum_probs=218.2
Q ss_pred CCCeEEEEEccCCCC-CCcHHHHHHHHH--hCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCc
Q 012311 157 DASYKFGIIGDLGQT-YNSLSTLEHYME--SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNH 233 (466)
Q Consensus 157 ~~~~~f~v~GD~g~~-~~~~~tl~~~~~--~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNH 233 (466)
+.++||+++||+|.. ..+..+++++.+ .+|||||++||++|+++... ..+|+.|++.++++.+.+|+++++|||
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~---~~~~~~~~~~~~~~~~~~P~~~~~GNH 78 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYNN---GSRWDTFMRQIEPLASYVPYMVTPGNH 78 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCcc---chhHHHHHHHHHHHHhcCCcEEcCccc
Confidence 468999999999973 456788888887 59999999999999876532 368999999999999999999999999
Q ss_pred eeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCC---CCChHHHHHHHHHHhhccCCCCC
Q 012311 234 EIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF---VKYTPQWEWLREELKKVDREKTP 310 (466)
Q Consensus 234 E~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~---~~~~~Q~~WL~~~L~~~~r~~~~ 310 (466)
|........ ....+..++.++........+.||+|++|++|||+|||+... ....+|++||+++|+++++.+++
T Consensus 79 D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~ 155 (294)
T cd00839 79 EADYNFSFY---KIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTP 155 (294)
T ss_pred ccccCCCCc---ccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCC
Confidence 987532110 011111233444444445668899999999999999998654 45789999999999998766789
Q ss_pred eEEEEeccccccCCCcccc--cCHHHHHHHHHHHHHcCCcEEEecccceec------CCc----ccccCCCCCcEEEEeC
Q 012311 311 WLIVLMHVPIYNSNEAHFM--EGESMRAAFESWFVRYKVDYRISNLHYNIS------SGD----CFPVPDKSAPVYITVG 378 (466)
Q Consensus 311 w~IV~~H~P~y~s~~~h~~--~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~------~~~----~~~~~~~~g~vyiv~G 378 (466)
|+||++|+|+|++...+.. .....++.|++||.+|+|+++++||.|.+. ++. +..+.+++|++||++|
T Consensus 156 ~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G 235 (294)
T cd00839 156 WIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIG 235 (294)
T ss_pred eEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEEC
Confidence 9999999999987654322 246789999999999999999999998643 222 1234578999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCCeEEEEEEEcCCCceeeeeeEEEEe
Q 012311 379 DGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHN 440 (466)
Q Consensus 379 ~gG~~~~~~~~~~~~~p~~sa~~~~~~G~~~l~v~n~t~l~~~~~~~~dg~~~~~D~~~i~k 440 (466)
+||+.++..... .+.|+|++++...+||++|+|.|+|+|+++|+++.+|++ .|+|+|.|
T Consensus 236 ~~G~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~~~g~v--~D~f~i~k 294 (294)
T cd00839 236 AGGNDEGLDPFS-APPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRNDDGVV--IDSFWIIK 294 (294)
T ss_pred CCccccCcCccc-CCCCCceEEEeccCCEEEEEEEecCeEEEEEEECCCCeE--EEEEEEeC
Confidence 999987643221 223689999999999999999998899999999899975 89999986
No 4
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=2.2e-35 Score=296.92 Aligned_cols=265 Identities=16% Similarity=0.262 Sum_probs=194.0
Q ss_pred EECCCCCCCCCCeEEEEEccCCCCCCcHHHHHH----HHHh-CCCEEEEcccccccccccccccchhHHH-HHHHHHHHh
Q 012311 148 FQTPPKIDPDASYKFGIIGDLGQTYNSLSTLEH----YMES-GAQTVLFLGDLSYADRYQFIDVGVRWDS-WGRFVERSA 221 (466)
Q Consensus 148 F~T~p~~g~~~~~~f~v~GD~g~~~~~~~tl~~----~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~-~~~~~~~l~ 221 (466)
|-+.+.. +..++|+++||+|.+...+..+++ +.++ ++||||.+||++ .+|..+.+ +++|.+ |.+.+....
T Consensus 17 ~~~~~~~--~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~Gv~sv~-Dp~f~~~FE~vY~~~s 92 (394)
T PTZ00422 17 FISSYSV--KAQLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNF-PGGVDGLN-DPKWKHCFENVYSEES 92 (394)
T ss_pred EEeeccc--CCeEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccc-cCCCCCcc-chhHHhhHhhhccCcc
Confidence 4444433 468999999999976555554443 3334 899999999998 56665555 678877 444444433
Q ss_pred --hcCCeEEcCCCceeeccCcCCccccc------------------ccccccccCCCCCCCCCCCceEEE----ee----
Q 012311 222 --AYQPWIWSAGNHEIEYMTYMGEVVPF------------------KSYLHRYPTPHLASKSSSPLWYAI----RR---- 273 (466)
Q Consensus 222 --~~~P~~~~~GNHE~~~~~~~~~~~~f------------------~~y~~rf~~P~~~~~~~~~~yYsf----~~---- 273 (466)
..+||++++||||+..+... ....+ .....||.|| +.||++ ..
T Consensus 93 ~~L~~Pwy~vLGNHDy~Gn~~A-Qi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP--------~~yY~~~~~f~~~~~~ 163 (394)
T PTZ00422 93 GDMQIPFFTVLGQADWDGNYNA-ELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMP--------NYWYHYFTHFTDTSGP 163 (394)
T ss_pred hhhCCCeEEeCCcccccCCchh-hhccccccccccccccccccccccccCCCccCC--------chhheeeeeeeccccc
Confidence 57999999999998644211 00001 0123689999 468854 22
Q ss_pred ---------CCEEEEEEcCCC-----CCC-CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHH
Q 012311 274 ---------ASAHIIVLSSYS-----PFV-KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAF 338 (466)
Q Consensus 274 ---------g~v~fI~Lds~~-----~~~-~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l 338 (466)
..|.||+|||.. ++. ....|++||+++|+.+ ++.++|+||++|||+|+++. | .+..+++..|
T Consensus 164 ~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a-~k~a~WkIVvGHhPIySsG~-h-g~~~~L~~~L 240 (394)
T PTZ00422 164 SLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYA-PKIADYIIVVGDKPIYSSGS-S-KGDSYLSYYL 240 (394)
T ss_pred ccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhh-ccCCCeEEEEecCceeecCC-C-CCCHHHHHHH
Confidence 238999999953 122 2468999999999754 35788999999999999886 4 2456799999
Q ss_pred HHHHHHcCCcEEEecccceecCCcccccCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCCeE
Q 012311 339 ESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHA 418 (466)
Q Consensus 339 ~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv~G~gG~~~~~~~~~~~~~p~~sa~~~~~~G~~~l~v~n~t~l 418 (466)
+|||++|+||++++||+|+++. ...+++.||++|+||+..+.. . ..++++.|....+||+.+++ +.+.+
T Consensus 241 ~PLL~ky~VdlYisGHDH~lq~------i~~~gt~yIvSGaGs~~~~~~---~-~~~~~s~F~~~~~GF~~~~l-~~~~l 309 (394)
T PTZ00422 241 LPLLKDAQVDLYISGYDRNMEV------LTDEGTAHINCGSGGNSGRKS---I-MKNSKSLFYSEDIGFCIHEL-NAEGM 309 (394)
T ss_pred HHHHHHcCcCEEEEccccceEE------ecCCCceEEEeCccccccCCC---C-CCCCCcceecCCCCEEEEEE-ecCEE
Confidence 9999999999999999998753 134689999999999865421 1 23457889888999999998 67789
Q ss_pred EEEEEEcCCCceeeeeeEEEEec
Q 012311 419 FYHWNRNDDGKKVATDSFILHNQ 441 (466)
Q Consensus 419 ~~~~~~~~dg~~~~~D~~~i~k~ 441 (466)
+++++++.+|++ ++++++.++
T Consensus 310 ~~~fid~~~Gkv--L~~~~~~~~ 330 (394)
T PTZ00422 310 VTKFVSGNTGEV--LYTHKQPLK 330 (394)
T ss_pred EEEEEeCCCCcE--EEEeeeccc
Confidence 999997679996 799888664
No 5
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=100.00 E-value=5.5e-33 Score=273.52 Aligned_cols=247 Identities=21% Similarity=0.362 Sum_probs=176.8
Q ss_pred eEEEEEccCCCC-CCcHH----HHHHHHH-hCCCEEEEcccccccccccccccchhH-HHHHHHHHHHhhcCCeEEcCCC
Q 012311 160 YKFGIIGDLGQT-YNSLS----TLEHYME-SGAQTVLFLGDLSYADRYQFIDVGVRW-DSWGRFVERSAAYQPWIWSAGN 232 (466)
Q Consensus 160 ~~f~v~GD~g~~-~~~~~----tl~~~~~-~~~dfvl~~GDl~Y~~~~~~~d~~~~w-d~~~~~~~~l~~~~P~~~~~GN 232 (466)
+||+++||+|.. ..... .+.++.+ .+|||||++||++|+++....+ +.+| +.|.+.++.+...+|+++++||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~-~~~~~~~~~~~~~~~~~~~P~~~v~GN 79 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVD-DPRFETTFEDVYSAPSLQVPWYLVLGN 79 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCc-chHHHHHHHHHccchhhcCCeEEecCC
Confidence 489999999986 23222 2333444 4999999999999988754332 3444 3455555555468999999999
Q ss_pred ceeeccCcCCccccccc--ccccccCCCCCCCCCCCceEEEeeC------CEEEEEEcCCCCC---------------CC
Q 012311 233 HEIEYMTYMGEVVPFKS--YLHRYPTPHLASKSSSPLWYAIRRA------SAHIIVLSSYSPF---------------VK 289 (466)
Q Consensus 233 HE~~~~~~~~~~~~f~~--y~~rf~~P~~~~~~~~~~yYsf~~g------~v~fI~Lds~~~~---------------~~ 289 (466)
||...+. .....+.. +..+|.+| ..||+|+++ +++||+|||.... ..
T Consensus 80 HD~~~~~--~~~~~~~~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~ 149 (277)
T cd07378 80 HDYSGNV--SAQIDYTKRPNSPRWTMP--------AYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKL 149 (277)
T ss_pred cccCCCc--hheeehhccCCCCCccCc--------chheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhh
Confidence 9986421 11111111 23445555 479999998 7999999996421 13
Q ss_pred ChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceecCCcccccCCC
Q 012311 290 YTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPDK 369 (466)
Q Consensus 290 ~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~ 369 (466)
..+|++||+++|+++ ..+|+||++|+|+++... +. ....+++.|+++|.+|+|+++++||.|...... .+.
T Consensus 150 ~~~Q~~wL~~~L~~~---~~~~~iv~~H~P~~~~~~-~~-~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~----~~~ 220 (277)
T cd07378 150 AEEQLAWLEKTLAAS---TADWKIVVGHHPIYSSGE-HG-PTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIK----DDG 220 (277)
T ss_pred HHHHHHHHHHHHHhc---CCCeEEEEeCccceeCCC-CC-CcHHHHHHHHHHHHHcCCCEEEeCCcccceeee----cCC
Confidence 579999999999985 348999999999998654 22 235678999999999999999999998643221 233
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCCeEEEEEEEcCCC
Q 012311 370 SAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDG 428 (466)
Q Consensus 370 ~g~vyiv~G~gG~~~~~~~~~~~~~p~~sa~~~~~~G~~~l~v~n~t~l~~~~~~~~dg 428 (466)
.++.||++|+||...+........+|.|+.++...+||++|+|.+ .++.++|+. .||
T Consensus 221 ~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~-~~l~~~~~~-~~g 277 (277)
T cd07378 221 SGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTK-EELTVRFYD-ADG 277 (277)
T ss_pred CCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEEec-CEEEEEEEC-CCC
Confidence 689999999999876543322233445788888999999999965 579999984 665
No 6
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-27 Score=220.66 Aligned_cols=260 Identities=19% Similarity=0.257 Sum_probs=170.0
Q ss_pred EEECCCCCCCCCCeEEEEEccCCCCCCcHH-----HHHHHHHh-CCCEEEEcccccccccccccccchhHHH-HHHHHHH
Q 012311 147 WFQTPPKIDPDASYKFGIIGDLGQTYNSLS-----TLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDS-WGRFVER 219 (466)
Q Consensus 147 ~F~T~p~~g~~~~~~f~v~GD~g~~~~~~~-----tl~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~-~~~~~~~ 219 (466)
+|.-|+. ++..++|+++||+|......+ .+..+.+. +.||||.+||++|.+|..+.. +++++. |.+....
T Consensus 33 ~l~~p~~--~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~-Dp~Fq~sF~nIYT~ 109 (336)
T KOG2679|consen 33 RLYDPAK--SDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSEN-DPRFQDSFENIYTA 109 (336)
T ss_pred hhcCCCC--CCCceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCC-ChhHHhhhhhcccC
Confidence 4555554 367999999999997653222 12234444 999999999999998876443 455543 3333322
Q ss_pred HhhcCCeEEcCCCceeeccCcCCcccccccccccccCCCCCCCCCCCceEE--E----eeCCEEEEEEcCCC-------C
Q 012311 220 SAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYA--I----RRASAHIIVLSSYS-------P 286 (466)
Q Consensus 220 l~~~~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYs--f----~~g~v~fI~Lds~~-------~ 286 (466)
-..+.||+.+.||||+..+....-..-++.-..||..|. .||- + ..-++.++|+|+.. +
T Consensus 110 pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~r--------sf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~yd 181 (336)
T KOG2679|consen 110 PSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPR--------SFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYD 181 (336)
T ss_pred cccccchhhhccCccccCchhhhhhHHHHhhccceeccc--------HHhhcceeeeeeccccccchhhheecccccccc
Confidence 223569999999999975432100011344456776663 2331 0 11134455555532 1
Q ss_pred C-C------CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceec
Q 012311 287 F-V------KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNIS 359 (466)
Q Consensus 287 ~-~------~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~ 359 (466)
+ + ....|+.||+..|++ +.++|+||++|||+.+.+. | +...+++++|.|||++++||++++||+|.+.
T Consensus 182 w~~v~PR~~~~~~~l~~le~~L~~---S~a~wkiVvGHh~i~S~~~-H-G~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQ 256 (336)
T KOG2679|consen 182 WRGVLPRVKYLRALLSWLEVALKA---SRAKWKIVVGHHPIKSAGH-H-GPTKELEKQLLPILEANGVDLYINGHDHCLQ 256 (336)
T ss_pred cccCChHHHHHHHHHHHHHHHHHH---hhcceEEEecccceehhhc-c-CChHHHHHHHHHHHHhcCCcEEEecchhhhh
Confidence 1 1 135789999999999 7899999999999998764 5 4578899999999999999999999998764
Q ss_pred CCcccccCC-CCCcEEEEeCCCCCCCCCCCCCC-CCCCCccceeeCcccEEEEEEecCCeEEEEEEEcCCCce
Q 012311 360 SGDCFPVPD-KSAPVYITVGDGGNQEGLAGKFR-YPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKK 430 (466)
Q Consensus 360 ~~~~~~~~~-~~g~vyiv~G~gG~~~~~~~~~~-~~~p~~sa~~~~~~G~~~l~v~n~t~l~~~~~~~~dg~~ 430 (466)
.- .+ .+++-|+++| ||++....+... .-.|+...|....-||+.++| ....+++.|++ ..|++
T Consensus 257 hi-----s~~e~~iqf~tSG-agSkaw~g~~~~~~~~p~~lkF~YdgqGfmsv~i-s~~e~~vvfyD-~~G~~ 321 (336)
T KOG2679|consen 257 HI-----SSPESGIQFVTSG-AGSKAWRGTDHNPEVNPKELKFYYDGQGFMSVEI-SHSEARVVFYD-VSGKV 321 (336)
T ss_pred hc-----cCCCCCeeEEeeC-CcccccCCCccCCccChhheEEeeCCCceEEEEE-ecceeEEEEEe-ccCce
Confidence 32 23 4556666666 455443221111 123444456666779999999 56679999986 78886
No 7
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.95 E-value=1.5e-26 Score=243.08 Aligned_cols=284 Identities=20% Similarity=0.314 Sum_probs=150.3
Q ss_pred EeeecCCCCcEEEEEEcCCC--------CCCcEEEEeec--CCCCceEEEeEEEEeeeeccccceEEEEEecCCCCCCEE
Q 012311 64 ITQGDYDGKAVIISWVTPHE--------PGPSTVSYGTS--ADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKY 133 (466)
Q Consensus 64 lt~~~~~~~~~~V~W~t~~~--------~~~~~V~yg~~--~~~~~~~a~g~~~~y~~~~~~~~~~h~v~l~gL~P~T~Y 133 (466)
|+.|+ +..+..|.|..-.. ..+..|++..+ +........++..+ +....++++++|+||+|+|+|
T Consensus 3 vasGd-p~~~svilWtR~~~~~~~~~~~~~~~~V~~~va~d~~~~~~~~~~~~~~----~~~~d~t~~v~v~gL~p~t~Y 77 (453)
T PF09423_consen 3 VASGD-PTPDSVILWTRVTPPAAAGGMPKAPVPVRWEVATDPEFSNVVRSGTVTT----TAERDFTVKVDVTGLQPGTRY 77 (453)
T ss_dssp EEEE----SS-EEEEEE--SBGGTB---SS-EEEEEEEESSTTSSSEEEEEEEEE-----GGGTTEEEEEE-S--TT-EE
T ss_pred ccccC-CCCCEEEEEEEecCcccCCCCCCCcEEEEEEEECCCCccceEEecceec----ccCCCeEeecccCCCCCCceE
Confidence 46665 56677888987654 11345555544 43333334444433 346789999999999999999
Q ss_pred EEEeccC---CccceEEEECCCCCCCCCCeEEEEEccCCCCCCcHHHHHHHHH-hCCCEEEEcccccccccc---c----
Q 012311 134 YYKIGSG---DSSREFWFQTPPKIDPDASYKFGIIGDLGQTYNSLSTLEHYME-SGAQTVLFLGDLSYADRY---Q---- 202 (466)
Q Consensus 134 ~Yrv~~~---~~s~~~~F~T~p~~g~~~~~~f~v~GD~g~~~~~~~tl~~~~~-~~~dfvl~~GDl~Y~~~~---~---- 202 (466)
+||+... ..+++++|||+|... ..++||++++|.+........+.++.+ .+|||+||+||.+|++.. .
T Consensus 78 ~Y~~~~~~~~~~s~~g~~rT~p~~~-~~~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~ 156 (453)
T PF09423_consen 78 YYRFVVDGGGQTSPVGRFRTAPDGD-PDPFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSR 156 (453)
T ss_dssp EEEEEE--TTEE---EEEE--TT------EEEEEE----CCC---HHHHHHTT-S--SEEEE-S-SS----TTSS--TT-
T ss_pred EEEEEEecCCCCCCceEEEcCCCCC-CCceEEEEECCCCcccChHHHHHhhhccCCCcEEEEeCCeeeccCCcccccccc
Confidence 9999873 468899999997543 357999999999876656788889988 499999999999999863 0
Q ss_pred ---------------ccccchhHHHH--HHHHHHHhhcCCeEEcCCCceeeccCcC-Ccc------ccc-----cccccc
Q 012311 203 ---------------FIDVGVRWDSW--GRFVERSAAYQPWIWSAGNHEIEYMTYM-GEV------VPF-----KSYLHR 253 (466)
Q Consensus 203 ---------------~~d~~~~wd~~--~~~~~~l~~~~P~~~~~GNHE~~~~~~~-~~~------~~f-----~~y~~r 253 (466)
..++..+|..+ ...++.+.+.+|++.++.+||+.++... ++. ..+ .+++.+
T Consensus 157 ~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay 236 (453)
T PF09423_consen 157 RPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAY 236 (453)
T ss_dssp --S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCccccccccccchHHHHHHHHHHH
Confidence 00123334433 2456677889999999999999754321 110 011 112222
Q ss_pred cc-CCCCC---CCCCCCceEEEeeCC-EEEEEEcCCCC-----C----------------CCChHHHHHHHHHHhhccCC
Q 012311 254 YP-TPHLA---SKSSSPLWYAIRRAS-AHIIVLSSYSP-----F----------------VKYTPQWEWLREELKKVDRE 307 (466)
Q Consensus 254 f~-~P~~~---~~~~~~~yYsf~~g~-v~fI~Lds~~~-----~----------------~~~~~Q~~WL~~~L~~~~r~ 307 (466)
|. +|... .+.....|++|++|+ +.|++||++.. . -.+.+|++||++.|++ +
T Consensus 237 ~e~~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~---s 313 (453)
T PF09423_consen 237 FEYQPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLAS---S 313 (453)
T ss_dssp HHHS---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH----
T ss_pred HhhcCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhc---C
Confidence 21 33321 122456899999999 99999999641 1 1368999999999998 5
Q ss_pred CCCeEEEEeccccccCCC-----------cccccCHHHHHHHHHHHHHcCCc--EEEecccc
Q 012311 308 KTPWLIVLMHVPIYNSNE-----------AHFMEGESMRAAFESWFVRYKVD--YRISNLHY 356 (466)
Q Consensus 308 ~~~w~IV~~H~P~y~s~~-----------~h~~~~~~~r~~l~~ll~~y~Vd--~~~~gh~~ 356 (466)
.++|+|+..-.|+..... .++..-...|+.|..+|.+.++. .+++|-.|
T Consensus 314 ~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH 375 (453)
T PF09423_consen 314 QATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVH 375 (453)
T ss_dssp -SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSS
T ss_pred CCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcc
Confidence 699999998887754321 12333467899999999999997 67788665
No 8
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.95 E-value=3.1e-26 Score=223.80 Aligned_cols=229 Identities=16% Similarity=0.162 Sum_probs=160.0
Q ss_pred CCeEEEEEccCCCCCC--c---------------HHHHHHHHHh--CCCEEEEcccccccccccccccchhHHHHHHHHH
Q 012311 158 ASYKFGIIGDLGQTYN--S---------------LSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVE 218 (466)
Q Consensus 158 ~~~~f~v~GD~g~~~~--~---------------~~tl~~~~~~--~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~ 218 (466)
.+++|++++|+|.+.. . ...++.+.+. +||||+++||++........ ...+|+.+.+.++
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~-~~~~~~~~~~~~~ 81 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDEL-RERQVSDLKDVLS 81 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhh-HHHHHHHHHHHHh
Confidence 5899999999998731 1 1223344455 89999999999975443211 1245666777777
Q ss_pred HHhhcCCeEEcCCCceeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCC------CCChH
Q 012311 219 RSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF------VKYTP 292 (466)
Q Consensus 219 ~l~~~~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~------~~~~~ 292 (466)
.+...+|+++++||||+...+. ...+..|...| ++.||+|++|+++||+|||.... ....+
T Consensus 82 ~~~~~vp~~~i~GNHD~~~~~~---~~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~ 148 (262)
T cd07395 82 LLDPDIPLVCVCGNHDVGNTPT---EESIKDYRDVF----------GDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQA 148 (262)
T ss_pred hccCCCcEEEeCCCCCCCCCCC---hhHHHHHHHHh----------CCcceEEEECCEEEEEeccccccCccccccchHH
Confidence 6666799999999999853321 11122333333 24689999999999999995421 13578
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEeccccccCCCccc----ccCHHHHHHHHHHHHHcCCcEEEecccceecCCcccccCC
Q 012311 293 QWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHF----MEGESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPD 368 (466)
Q Consensus 293 Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~----~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~ 368 (466)
|++||+++|+++.+.+.+|+||++|+|++....... ......+++|.++|++++|+.++|||.|..... .
T Consensus 149 ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~------~ 222 (262)
T cd07395 149 QDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGG------R 222 (262)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCce------E
Confidence 999999999997545678999999999986443211 123467889999999999999999999853321 2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCCeEEEEEE
Q 012311 369 KSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWN 423 (466)
Q Consensus 369 ~~g~vyiv~G~gG~~~~~~~~~~~~~p~~sa~~~~~~G~~~l~v~n~t~l~~~~~ 423 (466)
..|+.|++++++|...+ ....||..++|..+ .++++++
T Consensus 223 ~~g~~~~~~~~~~~~~~----------------~~~~g~~~~~v~~~-~~~~~~~ 260 (262)
T cd07395 223 YGGLEMVVTSAIGAQLG----------------NDKSGLRIVKVTED-KIVHEYY 260 (262)
T ss_pred ECCEEEEEcCceecccC----------------CCCCCcEEEEECCC-ceeeeee
Confidence 34788888888775421 12378999999544 4788876
No 9
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.2e-24 Score=217.91 Aligned_cols=286 Identities=19% Similarity=0.250 Sum_probs=201.5
Q ss_pred ceEEEeeecCCCCcEEEEEEcCCC-------CCCcEEEEeecCCCCceEEEeEEEEeeeeccccceEEEEEecCCCCCCE
Q 012311 60 QQVHITQGDYDGKAVIISWVTPHE-------PGPSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTK 132 (466)
Q Consensus 60 ~qv~lt~~~~~~~~~~V~W~t~~~-------~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~~~~h~v~l~gL~P~T~ 132 (466)
.+.-++.|+ +.....|.|..-+. +....+|+.++++.-+.+..|+..+ .....+.+|+.++||+|++.
T Consensus 39 F~~GVaSGD-p~~~svviWTRl~P~p~~~g~~v~V~wEvs~~~~f~~ivr~gt~~a----~p~~dhtv~v~~~gL~P~~~ 113 (522)
T COG3540 39 FTHGVASGD-PTATSVVIWTRLDPEPLNGGRPVPVIWEVSTDENFSNIVRKGTVIA----SPELDHTVHVDLRGLSPDQD 113 (522)
T ss_pred cccccccCC-CCCCeEEEEEccCCccccCCCCcceEEEecCCccHHHHHhcCCccC----CcccCceEEEeccCCCCCce
Confidence 455567675 56788889987541 2345777888776544444555443 23577999999999999999
Q ss_pred EEEEeccC-CccceEEEECCCCCCCCCCeEEEEEccC---CCCCCcHHHHHHHHHhCCCEEEEccccccccccc------
Q 012311 133 YYYKIGSG-DSSREFWFQTPPKIDPDASYKFGIIGDL---GQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQ------ 202 (466)
Q Consensus 133 Y~Yrv~~~-~~s~~~~F~T~p~~g~~~~~~f~v~GD~---g~~~~~~~tl~~~~~~~~dfvl~~GDl~Y~~~~~------ 202 (466)
|+||+..+ ..|.+++|||+|+++ ..++|+.+||. +...+...+.++|.+.+||||||+||.+|+++..
T Consensus 114 yfYRf~~~~~~spvGrtrTapa~~--~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyIYeyg~~~~~~~~ 191 (522)
T COG3540 114 YFYRFKAGDERSPVGRTRTAPAPG--RAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYEYGPIPDEVSL 191 (522)
T ss_pred EEEEEeeCCccccccccccCCCCC--CcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCeeeccCCccccccc
Confidence 99999887 467999999999975 45555555554 4455567788889999999999999999998753
Q ss_pred ----c--------------cccchhHHHH--HHHHHHHhhcCCeEEcCCCceeeccCcCC--c----c--ccc-----cc
Q 012311 203 ----F--------------IDVGVRWDSW--GRFVERSAAYQPWIWSAGNHEIEYMTYMG--E----V--VPF-----KS 249 (466)
Q Consensus 203 ----~--------------~d~~~~wd~~--~~~~~~l~~~~P~~~~~GNHE~~~~~~~~--~----~--~~f-----~~ 249 (466)
+ .||+.+|..+ ...++...+..||++++.+||..++...+ + + +.| .+
T Consensus 192 ~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A 271 (522)
T COG3540 192 NSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFVLRAAAA 271 (522)
T ss_pred ccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHHHHHHHH
Confidence 1 1245555554 35677788899999999999998663211 1 0 011 22
Q ss_pred ccccc-cCCCCCCCC--CCCceEEEeeCC-EEEEEEcCCCCC----------------------CCChHHHHHHHHHHhh
Q 012311 250 YLHRY-PTPHLASKS--SSPLWYAIRRAS-AHIIVLSSYSPF----------------------VKYTPQWEWLREELKK 303 (466)
Q Consensus 250 y~~rf-~~P~~~~~~--~~~~yYsf~~g~-v~fI~Lds~~~~----------------------~~~~~Q~~WL~~~L~~ 303 (466)
++.++ .||...+.. ....|.+|.||+ +.|.+||+++.- -.+..|.+||++.|.+
T Consensus 272 ~qAyyE~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~ 351 (522)
T COG3540 272 RQAYYEHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGA 351 (522)
T ss_pred HHHHHHhCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhh
Confidence 33332 377664332 257999999998 789999996411 1368999999999999
Q ss_pred ccCCCCCeEEEEeccccccCC--Cc----------ccccC-HHHHHHHHHHHHHcCCc--EEEeccc
Q 012311 304 VDREKTPWLIVLMHVPIYNSN--EA----------HFMEG-ESMRAAFESWFVRYKVD--YRISNLH 355 (466)
Q Consensus 304 ~~r~~~~w~IV~~H~P~y~s~--~~----------h~~~~-~~~r~~l~~ll~~y~Vd--~~~~gh~ 355 (466)
+++.|+|+..-.|+=... .. +..+| ..-|+.|...+.+.++. +++.|-.
T Consensus 352 ---SkatWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDv 415 (522)
T COG3540 352 ---SKATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDV 415 (522)
T ss_pred ---cchhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechh
Confidence 899999998888762111 00 01122 34588999999999998 6777743
No 10
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.90 E-value=1.7e-22 Score=194.46 Aligned_cols=216 Identities=18% Similarity=0.180 Sum_probs=148.9
Q ss_pred EEEEEccCCCCCCc---------H----HHHHHHHHh--CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCC
Q 012311 161 KFGIIGDLGQTYNS---------L----STLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP 225 (466)
Q Consensus 161 ~f~v~GD~g~~~~~---------~----~tl~~~~~~--~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P 225 (466)
||++++|+|.+... . ..++.+.+. +||+||++||++.... ...|..+.+.++.+ .+|
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~------~~~~~~~~~~l~~~--~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGS------PESYERLRELLAAL--PIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCC------HHHHHHHHHHHhhc--CCC
Confidence 69999999987531 2 234445555 8999999999996422 34556666666665 789
Q ss_pred eEEcCCCceeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCC---C-CChHHHHHHHHHH
Q 012311 226 WIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF---V-KYTPQWEWLREEL 301 (466)
Q Consensus 226 ~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~---~-~~~~Q~~WL~~~L 301 (466)
++.++||||.... +...|..... .....+|+|+.++++||+||+.... + ...+|++||+++|
T Consensus 73 ~~~v~GNHD~~~~-----------~~~~~~~~~~---~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L 138 (240)
T cd07402 73 VYLLPGNHDDRAA-----------MRAVFPELPP---APGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAAL 138 (240)
T ss_pred EEEeCCCCCCHHH-----------HHHhhccccc---cccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHH
Confidence 9999999997421 1122211100 1335789999999999999996532 1 3578999999999
Q ss_pred hhccCCCCCeEEEEeccccccCCCccc-ccCHHHHHHHHHHHHHc-CCcEEEecccceecCCcccccCCCCCcEEEEeCC
Q 012311 302 KKVDREKTPWLIVLMHVPIYNSNEAHF-MEGESMRAAFESWFVRY-KVDYRISNLHYNISSGDCFPVPDKSAPVYITVGD 379 (466)
Q Consensus 302 ~~~~r~~~~w~IV~~H~P~y~s~~~h~-~~~~~~r~~l~~ll~~y-~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv~G~ 379 (466)
++.. ..++|+++|+|++....... ......++.+.++|.++ +|+++++||.|.... ...+|+.|+++|+
T Consensus 139 ~~~~---~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~------~~~~g~~~~~~gs 209 (240)
T cd07402 139 AEAP---DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPID------GSWGGIPLLTAPS 209 (240)
T ss_pred HhCC---CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHH------eEECCEEEEEcCc
Confidence 9853 45678999999987543111 11122377899999999 999999999985322 1346888999998
Q ss_pred CCCCCCCCCCCCCCCCCccceeeCcccEEEEEEec
Q 012311 380 GGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKN 414 (466)
Q Consensus 380 gG~~~~~~~~~~~~~p~~sa~~~~~~G~~~l~v~n 414 (466)
.|.... +.|+..++.+..+||..+.+..
T Consensus 210 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 237 (240)
T cd07402 210 TCHQFA-------PDLDDFALDALAPGYRALSLHE 237 (240)
T ss_pred ceeeec-------CCCCcccccccCCCCcEEEEec
Confidence 887632 2333455556778998888743
No 11
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.88 E-value=1.3e-21 Score=191.75 Aligned_cols=198 Identities=21% Similarity=0.256 Sum_probs=131.7
Q ss_pred eEEEEEccCCCCCC----------cHHH----HHHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCC
Q 012311 160 YKFGIIGDLGQTYN----------SLST----LEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP 225 (466)
Q Consensus 160 ~~f~v~GD~g~~~~----------~~~t----l~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P 225 (466)
|||++++|+|.... +... ++++.+.+||||+++||++...... . ...|+.+.+.+..+ .+|
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~--~-~~~~~~~~~~l~~l--~~p 75 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNAR--A-EEALDAVLAILDRL--KGP 75 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCch--H-HHHHHHHHHHHHhc--CCC
Confidence 69999999995432 1222 3344445899999999999643211 0 24455555555544 589
Q ss_pred eEEcCCCceeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCC-------------------
Q 012311 226 WIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSP------------------- 286 (466)
Q Consensus 226 ~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~------------------- 286 (466)
+++++||||..... . ..+...+. ...+..||+|++|+++||+||+...
T Consensus 76 ~~~v~GNHD~~~~~---~----~~~~~~~~------~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~ 142 (267)
T cd07396 76 VHHVLGNHDLYNPS---R----EYLLLYTL------LGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNS 142 (267)
T ss_pred EEEecCcccccccc---H----hhhhcccc------cCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhc
Confidence 99999999986321 0 00100110 1134579999999999999999531
Q ss_pred -------------C--CCChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHc-CCcEE
Q 012311 287 -------------F--VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVDYR 350 (466)
Q Consensus 287 -------------~--~~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y-~Vd~~ 350 (466)
+ ....+|++||+++|+++.. +..++||++|+|++...... ......++.+.++|.+| +|+.+
T Consensus 143 ~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~-~~~~viV~~Hhp~~~~~~~~-~~~~~~~~~~~~ll~~~~~V~~v 220 (267)
T cd07396 143 NLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADA-NGEKVIIFSHFPLHPESTSP-HGLLWNHEEVLSILRAYGCVKAC 220 (267)
T ss_pred hhhhhccCccceeccCcCCHHHHHHHHHHHHHHHh-cCCeEEEEEeccCCCCCCCc-cccccCHHHHHHHHHhCCCEEEE
Confidence 0 1247999999999998642 33568999999998654311 11112357889999996 89999
Q ss_pred EecccceecCCcccccCCCCCcEEEEeCCCCCC
Q 012311 351 ISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQ 383 (466)
Q Consensus 351 ~~gh~~~~~~~~~~~~~~~~g~vyiv~G~gG~~ 383 (466)
++||.|.... ...+|+.|+++|+-...
T Consensus 221 ~~GH~H~~~~------~~~~gi~~~~~~a~~~~ 247 (267)
T cd07396 221 ISGHDHEGGY------AQRHGIHFLTLEGMVET 247 (267)
T ss_pred EcCCcCCCCc------cccCCeeEEEechhhcC
Confidence 9999985422 13468999998876543
No 12
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.84 E-value=3.1e-19 Score=175.78 Aligned_cols=239 Identities=15% Similarity=0.129 Sum_probs=145.8
Q ss_pred EEECCCCCCCCCCeEEEEEccCCCCCC---------cHH----HHHHHHHh--CCCEEEEcccccccccccccccchhHH
Q 012311 147 WFQTPPKIDPDASYKFGIIGDLGQTYN---------SLS----TLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWD 211 (466)
Q Consensus 147 ~F~T~p~~g~~~~~~f~v~GD~g~~~~---------~~~----tl~~~~~~--~~dfvl~~GDl~Y~~~~~~~d~~~~wd 211 (466)
..+|+++. ..+++|+.++|+|.... ... .++++.+. +|||||++||++.... ...+.
T Consensus 4 ~~~~~~~~--~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~------~~~~~ 75 (275)
T PRK11148 4 LLTLPLAG--EARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS------SEAYQ 75 (275)
T ss_pred ccccccCC--CCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC------HHHHH
Confidence 34666553 46899999999996321 122 23444343 6999999999996321 23455
Q ss_pred HHHHHHHHHhhcCCeEEcCCCceeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCC---CC
Q 012311 212 SWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSP---FV 288 (466)
Q Consensus 212 ~~~~~~~~l~~~~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~---~~ 288 (466)
.+.+.++.+ .+|+++++||||.... +..+.....+ ...++.+..++++||+|||... .|
T Consensus 76 ~~~~~l~~l--~~Pv~~v~GNHD~~~~--------~~~~~~~~~~--------~~~~~~~~~~~~~~i~Lds~~~g~~~G 137 (275)
T PRK11148 76 HFAEGIAPL--RKPCVWLPGNHDFQPA--------MYSALQDAGI--------SPAKHVLIGEHWQILLLDSQVFGVPHG 137 (275)
T ss_pred HHHHHHhhc--CCcEEEeCCCCCChHH--------HHHHHhhcCC--------CccceEEecCCEEEEEecCCCCCCcCC
Confidence 555555554 6899999999997421 1111111111 1223444455699999999642 22
Q ss_pred -CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCC-cccccCHHHHHHHHHHHHHc-CCcEEEecccceecCCcccc
Q 012311 289 -KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNE-AHFMEGESMRAAFESWFVRY-KVDYRISNLHYNISSGDCFP 365 (466)
Q Consensus 289 -~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~-~h~~~~~~~r~~l~~ll~~y-~Vd~~~~gh~~~~~~~~~~~ 365 (466)
...+|++||+++|++. +....||++|||+...+. +.......-.++|..+|++| +|+.+++||.|.-..
T Consensus 138 ~l~~~ql~wL~~~L~~~---~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~----- 209 (275)
T PRK11148 138 ELSEYQLEWLERKLADA---PERHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELD----- 209 (275)
T ss_pred EeCHHHHHHHHHHHhhC---CCCCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHh-----
Confidence 3589999999999985 223456666665544332 11111112346899999998 899999999985321
Q ss_pred cCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCCeEEEEEEEcCC
Q 012311 366 VPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDD 427 (466)
Q Consensus 366 ~~~~~g~vyiv~G~gG~~~~~~~~~~~~~p~~sa~~~~~~G~~~l~v~n~t~l~~~~~~~~d 427 (466)
...+|+.++++++.+..... ..+++ ++.....||..+++.++..+..++++-.+
T Consensus 210 -~~~~gi~~~~~ps~~~q~~~------~~~~~-~~~~~~~g~~~~~l~~~g~~~~~~~~~~~ 263 (275)
T PRK11148 210 -LDWNGRRLLATPSTCVQFKP------HCTNF-TLDTVAPGWRELELHADGSLETEVHRLAD 263 (275)
T ss_pred -ceECCEEEEEcCCCcCCcCC------CCCcc-ccccCCCcEEEEEEcCCCcEEEEEEEcCC
Confidence 13467888887776654211 11111 22234579999999655556666666443
No 13
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.80 E-value=2e-18 Score=168.14 Aligned_cols=183 Identities=16% Similarity=0.170 Sum_probs=117.2
Q ss_pred EEEEccCCCCCCcH-H-------HHHHHHHhCCCEEEEccccccccccc---ccccchhHHHHHHHHHHHhh--cCCeEE
Q 012311 162 FGIIGDLGQTYNSL-S-------TLEHYMESGAQTVLFLGDLSYADRYQ---FIDVGVRWDSWGRFVERSAA--YQPWIW 228 (466)
Q Consensus 162 f~v~GD~g~~~~~~-~-------tl~~~~~~~~dfvl~~GDl~Y~~~~~---~~d~~~~wd~~~~~~~~l~~--~~P~~~ 228 (466)
|+.++|+|.+.... . .++.+.+.+||+++++||++...... ..+.+.+|+.|.+.+..... ..|++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 68899998764311 1 12334444999999999999432211 11125678888887765433 589999
Q ss_pred cCCCceeeccCcCC-cccccccccccccCCCCCCCCCCCceEE--EeeCCEEEEEEcCCCCC---------C-CChHHHH
Q 012311 229 SAGNHEIEYMTYMG-EVVPFKSYLHRYPTPHLASKSSSPLWYA--IRRASAHIIVLSSYSPF---------V-KYTPQWE 295 (466)
Q Consensus 229 ~~GNHE~~~~~~~~-~~~~f~~y~~rf~~P~~~~~~~~~~yYs--f~~g~v~fI~Lds~~~~---------~-~~~~Q~~ 295 (466)
++||||........ ....|..|...+ ++ ...+|. ++.|+++||+|||.... + ...+|++
T Consensus 82 v~GNHD~~~~~~~~~~~~~~~~y~~~~-~~-------~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~ 153 (256)
T cd07401 82 IRGNHDLFNIPSLDSENNYYRKYSATG-RD-------GSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLD 153 (256)
T ss_pred eCCCCCcCCCCCccchhhHHHHhheec-CC-------CccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHH
Confidence 99999985322111 011111222111 11 122333 34599999999996321 1 3589999
Q ss_pred HHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEeccccee
Q 012311 296 WLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNI 358 (466)
Q Consensus 296 WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~ 358 (466)
||+++|++. .+.+++||++|+|++..... .....+ .+.++|.+++|++++|||.|..
T Consensus 154 wL~~~L~~~--~~~~~~IV~~HhP~~~~~~~---~~~~~~-~~~~ll~~~~v~~vl~GH~H~~ 210 (256)
T cd07401 154 RLEKELEKS--TNSNYTIWFGHYPTSTIISP---SAKSSS-KFKDLLKKYNVTAYLCGHLHPL 210 (256)
T ss_pred HHHHHHHhc--ccCCeEEEEEcccchhccCC---CcchhH-HHHHHHHhcCCcEEEeCCccCC
Confidence 999999985 34578999999999753321 111223 3999999999999999999853
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.79 E-value=2.1e-18 Score=163.63 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=105.2
Q ss_pred eEEEEEccCCCCCCc-H----HHHHHH----HHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHh-hcCCeEEc
Q 012311 160 YKFGIIGDLGQTYNS-L----STLEHY----MESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AYQPWIWS 229 (466)
Q Consensus 160 ~~f~v~GD~g~~~~~-~----~tl~~~----~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~-~~~P~~~~ 229 (466)
|||++++|+|..... . ..++.+ .+.++|+|+++||++..... ..+|+.+.+.++.+. ..+|++++
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~-----~~~~~~~~~~~~~l~~~~~p~~~~ 75 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDN-----DAEWEAADKAFARLDKAGIPYSVL 75 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCC-----HHHHHHHHHHHHHHHHcCCcEEEE
Confidence 699999999975431 1 122333 33489999999999964321 357888888888886 67999999
Q ss_pred CCCceeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCC
Q 012311 230 AGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKT 309 (466)
Q Consensus 230 ~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~ 309 (466)
+||||. ++.+|+. ...+|++||+++|++. +.
T Consensus 76 ~GNHD~------------------------------------------~~~ld~~----~~~~ql~WL~~~L~~~---~~ 106 (214)
T cd07399 76 AGNHDL------------------------------------------VLALEFG----PRDEVLQWANEVLKKH---PD 106 (214)
T ss_pred CCCCcc------------------------------------------hhhCCCC----CCHHHHHHHHHHHHHC---CC
Confidence 999992 2223322 2479999999999984 34
Q ss_pred CeEEEEeccccccCCCccccc-----CHHHHHHHHHHHHHc-CCcEEEeccccee
Q 012311 310 PWLIVLMHVPIYNSNEAHFME-----GESMRAAFESWFVRY-KVDYRISNLHYNI 358 (466)
Q Consensus 310 ~w~IV~~H~P~y~s~~~h~~~-----~~~~r~~l~~ll~~y-~Vd~~~~gh~~~~ 358 (466)
.++||++|+|++..+...... .+..++.|++||++| +|+.+++||.|..
T Consensus 107 ~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~ 161 (214)
T cd07399 107 RPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGA 161 (214)
T ss_pred CCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCC
Confidence 568999999998755432111 134456799999999 7999999998853
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.70 E-value=1.5e-16 Score=158.28 Aligned_cols=189 Identities=16% Similarity=0.213 Sum_probs=122.4
Q ss_pred EccCCCCCC---cHHHHHHHHHh--CCCEEEEcccccccccccccc-cch--hHHHHHHHHHHHhhcCCeEEcCCCceee
Q 012311 165 IGDLGQTYN---SLSTLEHYMES--GAQTVLFLGDLSYADRYQFID-VGV--RWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 165 ~GD~g~~~~---~~~tl~~~~~~--~~dfvl~~GDl~Y~~~~~~~d-~~~--~wd~~~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
+|+.+.... -..+++.+.+. +|||||++||++..+...... ... .+..+.+.++.....+|+++++||||..
T Consensus 43 ~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~ 122 (296)
T cd00842 43 WGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSY 122 (296)
T ss_pred CcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCC
Confidence 666664332 13455666666 899999999999866542211 011 2455666677777789999999999985
Q ss_pred ccCcC----Cccccccccccccc--CCCCCC-CCCCCceEEEe-eCCEEEEEEcCCCCC-----------CCChHHHHHH
Q 012311 237 YMTYM----GEVVPFKSYLHRYP--TPHLAS-KSSSPLWYAIR-RASAHIIVLSSYSPF-----------VKYTPQWEWL 297 (466)
Q Consensus 237 ~~~~~----~~~~~f~~y~~rf~--~P~~~~-~~~~~~yYsf~-~g~v~fI~Lds~~~~-----------~~~~~Q~~WL 297 (466)
..... +....+..+...|. +|.++. ....+.||++. .++++||+|||.... .....|++||
T Consensus 123 p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL 202 (296)
T cd00842 123 PVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWL 202 (296)
T ss_pred cccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHH
Confidence 32111 01111122222232 332211 11246799998 889999999996321 1237899999
Q ss_pred HHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcC--CcEEEecccce
Q 012311 298 REELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYK--VDYRISNLHYN 357 (466)
Q Consensus 298 ~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~--Vd~~~~gh~~~ 357 (466)
+++|+++... ...++|++|+|++..... .....++.|.+|+.+|. |...++||.|.
T Consensus 203 ~~~L~~a~~~-~~~v~I~~HiPp~~~~~~---~~~~~~~~~~~ii~~y~~~i~~~~~GH~H~ 260 (296)
T cd00842 203 EDELQEAEQA-GEKVWIIGHIPPGVNSYD---TLENWSERYLQIINRYSDTIAGQFFGHTHR 260 (296)
T ss_pred HHHHHHHHHC-CCeEEEEeccCCCCcccc---cchHHHHHHHHHHHHHHHhhheeeeccccc
Confidence 9999997532 345788899999874321 11356789999999998 77899999874
No 16
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.65 E-value=2e-16 Score=140.90 Aligned_cols=191 Identities=19% Similarity=0.148 Sum_probs=100.4
Q ss_pred eEEEEEccCCCCCCcH----HHHH-HHHHhCCCEEEEcccccccccccccccchhHHHHH-HHHHHHhhcCCeEEcCCCc
Q 012311 160 YKFGIIGDLGQTYNSL----STLE-HYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWG-RFVERSAAYQPWIWSAGNH 233 (466)
Q Consensus 160 ~~f~v~GD~g~~~~~~----~tl~-~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~-~~~~~l~~~~P~~~~~GNH 233 (466)
+||+++||+|...... ..+. ...+.++|+||++||+++..... ..+.... .........+|+++++|||
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPS-----EEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHH-----HHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeecccccccccc-----ccchhhhccchhhhhcccccccccccc
Confidence 6999999999876533 2222 23344999999999999865431 1222111 2334456789999999999
Q ss_pred eeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEE
Q 012311 234 EIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLI 313 (466)
Q Consensus 234 E~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~~w~I 313 (466)
|........................... ..+...........+..............|..|+...+....+...+|+|
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 153 (200)
T PF00149_consen 76 DYYSGNSFYGFYDYQFEDYYGNYNYYYS--YFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVI 153 (200)
T ss_dssp SSHHHHHHHHHHHHHHSSEEECSSEEEC--TESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEE
T ss_pred ccceeccccccccccccccccccccccc--cCcceeeecccccccccccccccccccccchhccccccccccccccccee
Confidence 9864311000000000000000000000 00000111222222222222111111222223333222222235678999
Q ss_pred EEeccccccCCCcccc--cCHHHHHHHHHHHHHcCCcEEEecccce
Q 012311 314 VLMHVPIYNSNEAHFM--EGESMRAAFESWFVRYKVDYRISNLHYN 357 (466)
Q Consensus 314 V~~H~P~y~s~~~h~~--~~~~~r~~l~~ll~~y~Vd~~~~gh~~~ 357 (466)
|++|+|+++....... .....++.++.++.+++|+++++||.|.
T Consensus 154 v~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~ 199 (200)
T PF00149_consen 154 VFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHR 199 (200)
T ss_dssp EEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSS
T ss_pred EEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceec
Confidence 9999999987653211 1235788999999999999999999874
No 17
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.60 E-value=3.1e-14 Score=138.48 Aligned_cols=163 Identities=20% Similarity=0.225 Sum_probs=103.9
Q ss_pred HHHHh-CCCEEEEcccccccccccccccchhHHH-HHHHHHHH---hhcCCeEEcCCCceeeccCcCCcccccccccccc
Q 012311 180 HYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDS-WGRFVERS---AAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRY 254 (466)
Q Consensus 180 ~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~-~~~~~~~l---~~~~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf 254 (466)
.+.+. +||+|+++||++..... .. ..+|.+ +.++.+-+ ...+|++.++||||+...... .......|..+|
T Consensus 39 ~~~~~l~PD~vv~lGDL~d~G~~--~~-~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~-~~~~~~rf~~~F 114 (257)
T cd08163 39 YMQKQLKPDSTIFLGDLFDGGRD--WA-DEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGV-VLPVRQRFEKYF 114 (257)
T ss_pred HHHHhcCCCEEEEecccccCCee--Cc-HHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCC-CHHHHHHHHHHh
Confidence 34443 89999999999864221 11 345654 33333332 224799999999998643211 011224455555
Q ss_pred cCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCC-----CCChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccc
Q 012311 255 PTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF-----VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFM 329 (466)
Q Consensus 255 ~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~-----~~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~ 329 (466)
. ..+|+|++|+++||+|||..-. ....+|.+||++.|+... ....+||++|+|+|......++
T Consensus 115 g----------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~--~~~p~ILl~H~Plyr~~~~~cg 182 (257)
T cd08163 115 G----------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKV--KSKPRILLTHVPLYRPPNTSCG 182 (257)
T ss_pred C----------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccC--CCCcEEEEeccccccCCCCCCC
Confidence 3 2468999999999999996421 134679999999998742 3344899999999965321110
Q ss_pred ---c---------CHH----H-HHHHHHHHHHcCCcEEEeccccee
Q 012311 330 ---E---------GES----M-RAAFESWFVRYKVDYRISNLHYNI 358 (466)
Q Consensus 330 ---~---------~~~----~-r~~l~~ll~~y~Vd~~~~gh~~~~ 358 (466)
+ +.. + .+.-..||++.+..++++||+|.+
T Consensus 183 ~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~ 228 (257)
T cd08163 183 PLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDY 228 (257)
T ss_pred CccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCcc
Confidence 0 111 1 234447888889999999999854
No 18
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.55 E-value=4e-14 Score=145.41 Aligned_cols=90 Identities=10% Similarity=0.165 Sum_probs=69.8
Q ss_pred CCceEEEe-eCCEEEEEEcCCCCC----C-CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCc----cc-ccCHH
Q 012311 265 SPLWYAIR-RASAHIIVLSSYSPF----V-KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEA----HF-MEGES 333 (466)
Q Consensus 265 ~~~yYsf~-~g~v~fI~Lds~~~~----~-~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~----h~-~~~~~ 333 (466)
+..||||+ .+++|||+|||.... + ...+|++||+++|++ .+.+++||++|||++..+.. +. .....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~---a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRA---SSDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhc---CCCCCEEEEECCCCcccccccccccccccccc
Confidence 56799999 899999999996432 2 368999999999997 34568999999999875431 10 01112
Q ss_pred HHHHHHHHHHHc-CCcEEEecccce
Q 012311 334 MRAAFESWFVRY-KVDYRISNLHYN 357 (466)
Q Consensus 334 ~r~~l~~ll~~y-~Vd~~~~gh~~~ 357 (466)
..++|.++|.+| +|..+++||.|.
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~ 391 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHS 391 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCC
Confidence 346899999999 899999999873
No 19
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.53 E-value=1.7e-14 Score=109.13 Aligned_cols=62 Identities=45% Similarity=0.820 Sum_probs=41.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCCeEEEEEEEcCCCceeeeeeE
Q 012311 370 SAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSF 436 (466)
Q Consensus 370 ~g~vyiv~G~gG~~~~~~~~~~~~~p~~sa~~~~~~G~~~l~v~n~t~l~~~~~~~~dg~~~~~D~~ 436 (466)
++|||||+|+||+.+ . .+..++|+|+++|...|||++|+|.|+|||+|+|+++.||++ .|+|
T Consensus 1 kapVhiv~G~aG~~l--~-~~~~~~~~wsa~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~v--~D~f 62 (62)
T PF14008_consen 1 KAPVHIVVGAAGNGL--D-PFPYPPPEWSAFRDSEYGYGRLTVANATHLHWEFIRSDDGSV--LDEF 62 (62)
T ss_dssp TS-EEEEE--S-T-------B-SS--TTEEEEE---EEEEEEE-SSSEEEEEEEETTS-T---CEE-
T ss_pred CCCEEEEECcCCCCc--c-cccCCCCCeeeeeccccCEEEEEEEcCCeEEEEEEECCCCcE--ecCC
Confidence 489999999999943 2 366778999999999999999999999999999999999985 8987
No 20
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.53 E-value=2.5e-13 Score=127.24 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=95.6
Q ss_pred CeEEEEEccCCCCCCc---------HHH---HHHHHH-hCCCEEEEcccccccccccccccchhHHHHHHHHHHHhh-cC
Q 012311 159 SYKFGIIGDLGQTYNS---------LST---LEHYME-SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQ 224 (466)
Q Consensus 159 ~~~f~v~GD~g~~~~~---------~~t---l~~~~~-~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~-~~ 224 (466)
.+||++++|+|..... ..+ +.++.+ .+||+||++||+++..... ...+..+.++++++.. .+
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~----~~~~~~~~~~~~~l~~~~~ 77 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTN----DNSTSALDKAVSPMIDRKI 77 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCc----hHHHHHHHHHHHHHHHcCC
Confidence 5899999999986532 122 333333 3899999999999854431 1124455555565543 69
Q ss_pred CeEEcCCCceeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhc
Q 012311 225 PWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKV 304 (466)
Q Consensus 225 P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~ 304 (466)
|+++++||||.. . -....|++||+++|++.
T Consensus 78 p~~~~~GNHD~~-------------------------------------------------g-~l~~~ql~wL~~~l~~~ 107 (199)
T cd07383 78 PWAATFGNHDGY-------------------------------------------------D-WIRPSQIEWFKETSAAL 107 (199)
T ss_pred CEEEECccCCCC-------------------------------------------------C-CCCHHHHHHHHHHHHHH
Confidence 999999999910 0 12368999999999986
Q ss_pred c--CCCCCeEEEEeccccccCCCc---------cccc---CHHHH-HHHHHHHHHcCCcEEEecccce
Q 012311 305 D--REKTPWLIVLMHVPIYNSNEA---------HFME---GESMR-AAFESWFVRYKVDYRISNLHYN 357 (466)
Q Consensus 305 ~--r~~~~w~IV~~H~P~y~s~~~---------h~~~---~~~~r-~~l~~ll~~y~Vd~~~~gh~~~ 357 (466)
. +....+.++++|+|+...... +..+ ..... ..+..+....+|+.+++||+|.
T Consensus 108 ~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~ 175 (199)
T cd07383 108 KKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHG 175 (199)
T ss_pred hhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCC
Confidence 3 234568999999998764320 0111 01112 2344455778999999999984
No 21
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.46 E-value=1.2e-12 Score=120.73 Aligned_cols=165 Identities=12% Similarity=0.012 Sum_probs=99.8
Q ss_pred EEEEccCCCCCCcHHHHHHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceeeccCcC
Q 012311 162 FGIIGDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYM 241 (466)
Q Consensus 162 f~v~GD~g~~~~~~~tl~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~~~~~~ 241 (466)
++++||++........ ..+.+.++|+||++||++..... ..... .+.+.. ..+|+++++||||.....
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~~~~------~~~~~-~~~l~~--~~~p~~~v~GNHD~~~~~-- 68 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNFGGK------EAAVE-INLLLA--IGVPVLAVPGNCDTPEIL-- 68 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCcCCH------HHHHH-HHHHHh--cCCCEEEEcCCCCCHHHH--
Confidence 4789999986543322 23444589999999999963221 11111 133332 368999999999964210
Q ss_pred CcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCC--C----CCChHHHHHHHHHHhhccCCCCCeEEEE
Q 012311 242 GEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSP--F----VKYTPQWEWLREELKKVDREKTPWLIVL 315 (466)
Q Consensus 242 ~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~--~----~~~~~Q~~WL~~~L~~~~r~~~~w~IV~ 315 (466)
.......... .-..+.++++.|+.+++..+ + ....+|++|+ +.|+. ...+.+|++
T Consensus 69 ------~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~---~~~~~~ilv 129 (188)
T cd07392 69 ------GLLTSAGLNL---------HGKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNN---LLAKNLILV 129 (188)
T ss_pred ------HhhhcCcEec---------CCCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhc---cCCCCeEEE
Confidence 0000000000 11345678899999997421 1 2356899998 45544 334568999
Q ss_pred eccccccCC-CcccccCHHHHHHHHHHHHHcCCcEEEecccce
Q 012311 316 MHVPIYNSN-EAHFMEGESMRAAFESWFVRYKVDYRISNLHYN 357 (466)
Q Consensus 316 ~H~P~y~s~-~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~ 357 (466)
+|+|++... .........-.+.+..+++++++++++|||.|.
T Consensus 130 ~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~ 172 (188)
T cd07392 130 THAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHE 172 (188)
T ss_pred ECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEecccc
Confidence 999998631 111111011235788899999999999999874
No 22
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.43 E-value=2.6e-12 Score=123.37 Aligned_cols=189 Identities=17% Similarity=0.167 Sum_probs=110.7
Q ss_pred EEEccCCCCC--------C---cHHHHHHHHHh------CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCC
Q 012311 163 GIIGDLGQTY--------N---SLSTLEHYMES------GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP 225 (466)
Q Consensus 163 ~v~GD~g~~~--------~---~~~tl~~~~~~------~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P 225 (466)
.+++|+|... . ..+.++.+.+. +||+||++||++.... ........+.++.+ ..|
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~------~~~~~~~l~~l~~l--~~~ 73 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMK------LEEAKLDLAWIDAL--PGT 73 (232)
T ss_pred eEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCC------hHHHHHHHHHHHhC--CCC
Confidence 4688888662 1 13455555554 8999999999984221 11222223333332 347
Q ss_pred eEEcCCCceeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCC----CC---------C----
Q 012311 226 WIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYS----PF---------V---- 288 (466)
Q Consensus 226 ~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~----~~---------~---- 288 (466)
+++++||||+... .. ..+...+. .. +.......++.++++.|+.++... .+ .
T Consensus 74 v~~V~GNHD~~~~----~~---~~~~~~l~--~~--~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (232)
T cd07393 74 KVLLKGNHDYWWG----SA---SKLRKALE--ES--RLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEK 142 (232)
T ss_pred eEEEeCCccccCC----CH---HHHHHHHH--hc--CeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHH
Confidence 8999999997311 00 11111111 00 000001245567889999886321 11 0
Q ss_pred CChHHHHHHHHHHhhccCC-CCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceecCCccccc-
Q 012311 289 KYTPQWEWLREELKKVDRE-KTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPV- 366 (466)
Q Consensus 289 ~~~~Q~~WL~~~L~~~~r~-~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~- 366 (466)
....|++||++.|+++... ...++|+++|+|++.... + .+.+..++.+++||++++||.|....-. +.
T Consensus 143 ~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~----~----~~~~~~~~~~~~v~~vl~GH~H~~~~~~--~~~ 212 (232)
T cd07393 143 IFERELERLELSLKAAKKREKEKIKIVMLHYPPANENG----D----DSPISKLIEEYGVDICVYGHLHGVGRDR--AIN 212 (232)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCC----C----HHHHHHHHHHcCCCEEEECCCCCCcccc--ccc
Confidence 1356999999999986432 225799999999987432 1 1366789999999999999988532100 00
Q ss_pred CCCCCcEEEEeCCC
Q 012311 367 PDKSAPVYITVGDG 380 (466)
Q Consensus 367 ~~~~g~vyiv~G~g 380 (466)
...+|+.|.++.++
T Consensus 213 ~~~~gi~~~~~~~~ 226 (232)
T cd07393 213 GERGGIRYQLVSAD 226 (232)
T ss_pred ceECCEEEEEEcch
Confidence 12467778776654
No 23
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.40 E-value=5.8e-12 Score=124.23 Aligned_cols=178 Identities=16% Similarity=0.131 Sum_probs=113.2
Q ss_pred eEEEEEccCCCC--CC-cHHHH----HHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCC
Q 012311 160 YKFGIIGDLGQT--YN-SLSTL----EHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGN 232 (466)
Q Consensus 160 ~~f~v~GD~g~~--~~-~~~tl----~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GN 232 (466)
++|+.++|.|.. .. +...+ +++...+||+++++||++.. +. ........++++......|++++|||
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~-~~-----~~~~~~~~~~l~~~~~~~~~~~vpGN 74 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTND-GE-----PEEYRRLKELLARLELPAPVIVVPGN 74 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCC-CC-----HHHHHHHHHHHhhccCCCceEeeCCC
Confidence 489999999988 22 23333 34444589999999999975 22 23334445555544457789999999
Q ss_pred ceeeccCcCCcccccccccccccCCCCCCCCCCCceEEEee-CCEEEEEEcCCCCC---C-CChHHHHHHHHHHhhccCC
Q 012311 233 HEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRR-ASAHIIVLSSYSPF---V-KYTPQWEWLREELKKVDRE 307 (466)
Q Consensus 233 HE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~-g~v~fI~Lds~~~~---~-~~~~Q~~WL~~~L~~~~r~ 307 (466)
||..... ...+...+.... ..+-.... +++++|.+|+.... | .+..|++||++.|++....
T Consensus 75 HD~~~~~-------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~ 140 (301)
T COG1409 75 HDARVVN-------GEAFSDQFFNRY-------AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPER 140 (301)
T ss_pred CcCCchH-------HHHhhhhhcccC-------cceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccc
Confidence 9975321 112222221110 11111222 67899999997532 2 4789999999999985322
Q ss_pred CCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcC--CcEEEecccce
Q 012311 308 KTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYK--VDYRISNLHYN 357 (466)
Q Consensus 308 ~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~--Vd~~~~gh~~~ 357 (466)
....+|+++|+|+.................+..++..++ |+.+++||.|.
T Consensus 141 ~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~ 192 (301)
T COG1409 141 AKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHL 192 (301)
T ss_pred cCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCcccc
Confidence 123567777877776544332222233457778899999 99999999874
No 24
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.38 E-value=5.5e-12 Score=111.68 Aligned_cols=132 Identities=18% Similarity=0.177 Sum_probs=89.8
Q ss_pred EEEEccCCCCCCcHH-----------HHHHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhc-CCeEEc
Q 012311 162 FGIIGDLGQTYNSLS-----------TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY-QPWIWS 229 (466)
Q Consensus 162 f~v~GD~g~~~~~~~-----------tl~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~-~P~~~~ 229 (466)
|+.++|++.+..... .++.+.+.++|+|+++||+++... ...|+.+.++++.+... +|++.+
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~------~~~~~~~~~~~~~l~~~~~~~~~v 74 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGL------PEEFEEAREFLDALPAPLEPVLVV 74 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCC------HHHHHHHHHHHHHccccCCcEEEe
Confidence 468899987654211 122233449999999999997432 34566777777776543 699999
Q ss_pred CCCceeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCC
Q 012311 230 AGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKT 309 (466)
Q Consensus 230 ~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~ 309 (466)
+||||.
T Consensus 75 ~GNHD~-------------------------------------------------------------------------- 80 (144)
T cd07400 75 PGNHDV-------------------------------------------------------------------------- 80 (144)
T ss_pred CCCCeE--------------------------------------------------------------------------
Confidence 999995
Q ss_pred CeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceecCCcccccCCCCCcEEEEeCC
Q 012311 310 PWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPVYITVGD 379 (466)
Q Consensus 310 ~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv~G~ 379 (466)
|+++|+|++...... ......++.+.++|.+++|+++++||.|......+. ...++++++..|+
T Consensus 81 ---iv~~Hhp~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~~--~~~~~~~~~~aGs 144 (144)
T cd07400 81 ---IVVLHHPLVPPPGSG-RERLLDAGDALKLLAEAGVDLVLHGHKHVPYVGNIS--NAGGGLVVIGAGT 144 (144)
T ss_pred ---EEEecCCCCCCCccc-cccCCCHHHHHHHHHHcCCCEEEECCCCCcCeeecc--CCCCCEEEEecCC
Confidence 889999998754321 111114668999999999999999999854322221 2345666666653
No 25
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.38 E-value=5.6e-12 Score=121.59 Aligned_cols=174 Identities=15% Similarity=0.098 Sum_probs=102.2
Q ss_pred EEEEEccCCCCCCc---HH----HHHHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCc
Q 012311 161 KFGIIGDLGQTYNS---LS----TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNH 233 (466)
Q Consensus 161 ~f~v~GD~g~~~~~---~~----tl~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNH 233 (466)
||++++|+|..... .. .++.+.+.++|+|+++||++.. . .+-..+.+.+..+ ..+|++.++|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~--~------~~~~~~~~~l~~~-~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISND--F------QRSLPFIEKLQEL-KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccc--h------hhHHHHHHHHHHh-cCCcEEEECCCC
Confidence 58999999964322 22 2333445589999999999942 1 1112333333332 458999999999
Q ss_pred eeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCC--------------------------C
Q 012311 234 EIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSP--------------------------F 287 (466)
Q Consensus 234 E~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~--------------------------~ 287 (466)
|...... +..+...+. + ..-.+.++.+..++++||.++...+ .
T Consensus 72 D~~~~~~------~~~~~~~~~-~----~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (239)
T TIGR03729 72 DMLKDLT------YEEIESNDS-P----LYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKR 140 (239)
T ss_pred CCCCCCC------HHHHHhccc-h----hhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCC
Confidence 9741110 111111110 0 0011223334446788888884211 1
Q ss_pred C-----CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCC----c--ccccC--HHHHHHHHHHHHHcCCcEEEecc
Q 012311 288 V-----KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNE----A--HFMEG--ESMRAAFESWFVRYKVDYRISNL 354 (466)
Q Consensus 288 ~-----~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~----~--h~~~~--~~~r~~l~~ll~~y~Vd~~~~gh 354 (466)
. ....|++||++.|++.. ...+||++|+|+..... . .+... ..-...|+.++++++|+.+++||
T Consensus 141 ~~~~~~~~~~~l~~l~~~l~~~~---~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH 217 (239)
T TIGR03729 141 PMSDPERTAIVLKQLKKQLNQLD---NKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGH 217 (239)
T ss_pred CCChHHHHHHHHHHHHHHHHhcC---CCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECC
Confidence 1 13678999999998852 23488999998855211 0 11110 11136888999999999999999
Q ss_pred cce
Q 012311 355 HYN 357 (466)
Q Consensus 355 ~~~ 357 (466)
.|.
T Consensus 218 ~H~ 220 (239)
T TIGR03729 218 LHR 220 (239)
T ss_pred ccC
Confidence 884
No 26
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.23 E-value=1.1e-10 Score=119.21 Aligned_cols=91 Identities=18% Similarity=0.320 Sum_probs=65.5
Q ss_pred CCceEEEe-eCCE--EEEEEcCCCC---------C-C-CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCC-cc--
Q 012311 265 SPLWYAIR-RASA--HIIVLSSYSP---------F-V-KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNE-AH-- 327 (466)
Q Consensus 265 ~~~yYsf~-~g~v--~fI~Lds~~~---------~-~-~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~-~h-- 327 (466)
+..||+|+ .|++ |||+||+... + | ...+|++||+++|+.+. .+.+++||++|+|+.+... .+
T Consensus 291 G~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~-a~~p~VVV~hHpPi~t~gi~~md~ 369 (492)
T TIGR03768 291 DFACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQ-ADGQLMIIAAHIPIAVSPIGSEME 369 (492)
T ss_pred CcceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCc-CCCceEEEEeCCCcccCCccchhh
Confidence 34699999 5855 9999998641 1 1 35899999999999874 2668899999988876322 11
Q ss_pred cc----------cCHHHHHHHHHHHHHc-CCcEEEecccc
Q 012311 328 FM----------EGESMRAAFESWFVRY-KVDYRISNLHY 356 (466)
Q Consensus 328 ~~----------~~~~~r~~l~~ll~~y-~Vd~~~~gh~~ 356 (466)
+. ++...-.+|..+|.+| +|-.++|||.|
T Consensus 370 w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvH 409 (492)
T TIGR03768 370 WWLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRH 409 (492)
T ss_pred hccccccccccccccccHHHHHHHHhcCCCeEEEEcCCcc
Confidence 00 0011123789999999 79999999987
No 27
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.23 E-value=4.6e-11 Score=108.50 Aligned_cols=142 Identities=14% Similarity=0.194 Sum_probs=87.1
Q ss_pred EEEEccCCCCCCcHHHH--HHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceeeccC
Q 012311 162 FGIIGDLGQTYNSLSTL--EHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMT 239 (466)
Q Consensus 162 f~v~GD~g~~~~~~~tl--~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~~~~ 239 (466)
|++++|++......... +.+.+.++|+++++||++.... . ..+...........|++.++||||....
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~------~---~~~~~~~~~~~~~~~v~~v~GNHD~~~~- 70 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTD------A---PRFAPLLLALKGFEPVIYVPGNHEFYVR- 70 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcc------h---HHHHHHHHhhcCCccEEEeCCCcceEEE-
Confidence 57899999865433221 1223348999999999996322 1 1222223333457899999999997410
Q ss_pred cCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEeccc
Q 012311 240 YMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVP 319 (466)
Q Consensus 240 ~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P 319 (466)
+. . ...||.+... ..++.+|+.++++ +.+||++|+|
T Consensus 71 ----------~~---G---------~~~w~~~~~~---------------~~~~~~~~~~d~~-------~~~vv~~Hhp 106 (166)
T cd07404 71 ----------II---G---------TTLWSDISLF---------------GEAAARMRMNDFR-------GKTVVVTHHA 106 (166)
T ss_pred ----------EE---e---------eecccccCcc---------------chHHHHhCCCCCC-------CCEEEEeCCC
Confidence 00 0 0123333221 1346667666665 3479999999
Q ss_pred cccCCCcc--c-c-cCHHHHHHHHHHHHHcCCcEEEecccce
Q 012311 320 IYNSNEAH--F-M-EGESMRAAFESWFVRYKVDYRISNLHYN 357 (466)
Q Consensus 320 ~y~s~~~h--~-~-~~~~~r~~l~~ll~~y~Vd~~~~gh~~~ 357 (466)
++...... . . .....++.+..++++++|+.+++||.|.
T Consensus 107 P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~ 148 (166)
T cd07404 107 PSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHF 148 (166)
T ss_pred CCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccc
Confidence 98765321 1 1 1123456677888999999999999874
No 28
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.19 E-value=1.2e-10 Score=110.46 Aligned_cols=183 Identities=15% Similarity=0.078 Sum_probs=104.1
Q ss_pred EEEEEccCCCCCCc------------HHHHHHH----HHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHh-hc
Q 012311 161 KFGIIGDLGQTYNS------------LSTLEHY----MESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AY 223 (466)
Q Consensus 161 ~f~v~GD~g~~~~~------------~~tl~~~----~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~-~~ 223 (466)
||+.++|+|.+... ..+++++ .+.++|+||++||++...... ...+..+.+.++.+. ..
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~----~~~~~~~~~~~~~~~~~~ 76 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPS----PEALELLIEALRRLKEAG 76 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCC----HHHHHHHHHHHHHHHHCC
Confidence 68999999976421 1233333 344999999999998643311 234556666666664 47
Q ss_pred CCeEEcCCCceeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhh
Q 012311 224 QPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKK 303 (466)
Q Consensus 224 ~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~ 303 (466)
+|+++++||||....... ......+......- ............++.+++.|+.++..... ....+.++++..+.+
T Consensus 77 ~~v~~~~GNHD~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~g~~~~~~~-~~~~~~~~~~~~~~~ 152 (223)
T cd00840 77 IPVFIIAGNHDSPSRLGA--LSPLLALSGLHLVG-VEEDVLTPLLLPKGGTGVAIYGLPYLRRS-RLRDLLADAELRPRP 152 (223)
T ss_pred CCEEEecCCCCCcccccc--ccchHhhCcEEEEc-ccCcceeEEEeccCCeEEEEEECCCCCHH-HHHHHHHHHHHHhhc
Confidence 899999999998643110 00001111100000 00000112233445556888888764321 123344555555555
Q ss_pred ccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccce
Q 012311 304 VDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYN 357 (466)
Q Consensus 304 ~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~ 357 (466)
. ......|++.|.|+........ . . .......+...++|++++||.|.
T Consensus 153 ~--~~~~~~Il~~H~~~~~~~~~~~-~--~-~~~~~~~~~~~~~d~v~~GH~H~ 200 (223)
T cd00840 153 L--DPDDFNILLLHGGVAGAGPSDS-E--R-APFVPEALLPAGFDYVALGHIHR 200 (223)
T ss_pred c--CCCCcEEEEEeeeeecCCCCcc-c--c-cccCcHhhcCcCCCEEECCCccc
Confidence 4 3456789999999875443211 1 1 12334556788999999999874
No 29
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.14 E-value=1.5e-09 Score=103.20 Aligned_cols=178 Identities=12% Similarity=0.120 Sum_probs=102.6
Q ss_pred CCeEEEEEccCCCCCCcHHHHHHH-HHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhh-cCCeEEcCCCcee
Q 012311 158 ASYKFGIIGDLGQTYNSLSTLEHY-MESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEI 235 (466)
Q Consensus 158 ~~~~f~v~GD~g~~~~~~~tl~~~-~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~-~~P~~~~~GNHE~ 235 (466)
.+-|+++++|+|......+.+... .+.++|+|+++||++.... ..+.+.++++.+.. ..|+++++||||.
T Consensus 3 ~~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~--------~~~~~~~~l~~l~~l~~pv~~V~GNhD~ 74 (224)
T cd07388 3 TVRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAA--------KSEDYAAFFRILGEAHLPTFYVPGPQDA 74 (224)
T ss_pred ceeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCC--------CHHHHHHHHHHHHhcCCceEEEcCCCCh
Confidence 356899999999754333333222 2348999999999996421 11334444444432 5799999999996
Q ss_pred eccCcCCcccccccccccccCCCCCCCCCCCceEEEee-CCEEEEEEcCCCCC--CCChHHH----HHHHHH-HhhccCC
Q 012311 236 EYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRR-ASAHIIVLSSYSPF--VKYTPQW----EWLREE-LKKVDRE 307 (466)
Q Consensus 236 ~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~-g~v~fI~Lds~~~~--~~~~~Q~----~WL~~~-L~~~~r~ 307 (466)
.....+. ..|...-..|..- . ..+. ...+ |++.|+.|+....+ ....+|. +||.+. |+...+.
T Consensus 75 ~v~~~l~-----~~~~~~~~~p~~~-~-lh~~--~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~~ 145 (224)
T cd07388 75 PLWEYLR-----EAYNAELVHPEIR-N-VHET--FAFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWEL 145 (224)
T ss_pred HHHHHHH-----HHhcccccCccce-e-cCCC--eEEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHhC
Confidence 3100000 0111111112100 0 0112 2334 56999999975433 2344542 665442 2222112
Q ss_pred CCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccce
Q 012311 308 KTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYN 357 (466)
Q Consensus 308 ~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~ 357 (466)
..+..|+++|+|+|..+..|. ... .+..++++++=.+.+|||.|+
T Consensus 146 ~~~~~VLv~H~PP~g~g~~h~-GS~----alr~~I~~~~P~l~i~GHih~ 190 (224)
T cd07388 146 KDYRKVFLFHTPPYHKGLNEQ-GSH----EVAHLIKTHNPLVVLVGGKGQ 190 (224)
T ss_pred CCCCeEEEECCCCCCCCCCcc-CHH----HHHHHHHHhCCCEEEEcCCce
Confidence 345689999999998743342 223 555689999999999999874
No 30
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.09 E-value=5.2e-10 Score=106.34 Aligned_cols=160 Identities=16% Similarity=0.031 Sum_probs=94.8
Q ss_pred CeEEEEEccCCCCCCc-H----HHHHHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCc
Q 012311 159 SYKFGIIGDLGQTYNS-L----STLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNH 233 (466)
Q Consensus 159 ~~~f~v~GD~g~~~~~-~----~tl~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNH 233 (466)
++||++++|+|..... . ..++.+.+.+||+|+++||++..... .. +.+.+.++.+....|++.++|||
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~-----~~--~~~~~~l~~l~~~~~v~~v~GNH 73 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVD-----VL--ELLLELLKKLKAPLGVYAVLGNH 73 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcch-----hh--HHHHHHHhccCCCCCEEEECCCc
Confidence 4799999999987542 1 22334444589999999999964322 11 34556666666678999999999
Q ss_pred eeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEE
Q 012311 234 EIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLI 313 (466)
Q Consensus 234 E~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~~w~I 313 (466)
|...... ..+........+. -..+.+..++.++..+.++.... .....+++.+.+++. .+....|
T Consensus 74 D~~~~~~----~~~~~~l~~~~v~-----~L~~~~~~~~~~~~~i~i~G~~~----~~~~~~~~~~~~~~~--~~~~~~I 138 (223)
T cd07385 74 DYYSGDE----ENWIEALESAGIT-----VLRNESVEISVGGATIGIAGVDD----GLGRRPDLEKALKGL--DEDDPNI 138 (223)
T ss_pred ccccCch----HHHHHHHHHcCCE-----EeecCcEEeccCCeEEEEEeccC----ccccCCCHHHHHhCC--CCCCCEE
Confidence 9864311 0000011000000 01123455666664444433111 122345677777764 3456789
Q ss_pred EEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccce
Q 012311 314 VLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYN 357 (466)
Q Consensus 314 V~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~ 357 (466)
++.|.|.+-. .+.+.++|+.++||.|.
T Consensus 139 ~l~H~P~~~~-----------------~~~~~~~dl~l~GHtHg 165 (223)
T cd07385 139 LLAHQPDTAE-----------------EAAAWGVDLQLSGHTHG 165 (223)
T ss_pred EEecCCChhH-----------------HhcccCccEEEeccCCC
Confidence 9999875321 11677999999999883
No 31
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.08 E-value=2.1e-08 Score=98.03 Aligned_cols=255 Identities=20% Similarity=0.297 Sum_probs=136.1
Q ss_pred CCCeEEEEEccCCCCCC--------------------cHHHHHHHHHh-CCCEEEEcccccccccccccccchhHHHHHH
Q 012311 157 DASYKFGIIGDLGQTYN--------------------SLSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGR 215 (466)
Q Consensus 157 ~~~~~f~v~GD~g~~~~--------------------~~~tl~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~ 215 (466)
+++||++.++|+|.+.. +...+.++.+. +||||+++||++++... .|.+ ..+..
T Consensus 51 ~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t--~Da~---~sl~k 125 (379)
T KOG1432|consen 51 DGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHST--QDAA---TSLMK 125 (379)
T ss_pred CCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCccccccc--HhHH---HHHHH
Confidence 46899999999987653 11234555554 99999999999986332 2212 33455
Q ss_pred HHHHH-hhcCCeEEcCCCceeeccCcCCcccccccccccccCCCCCCC---CCCCce--------EEEeeC---------
Q 012311 216 FVERS-AAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK---SSSPLW--------YAIRRA--------- 274 (466)
Q Consensus 216 ~~~~l-~~~~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~---~~~~~y--------Ysf~~g--------- 274 (466)
.++|. ...+||.++.||||-+.... ..+ ...|.. .+|..-+. ..+..+ -.--+|
T Consensus 126 AvaP~I~~~IPwA~~lGNHDdes~lt-r~q--l~~~i~--~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~ 200 (379)
T KOG1432|consen 126 AVAPAIDRKIPWAAVLGNHDDESDLT-RLQ--LMKFIS--KLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENK 200 (379)
T ss_pred HhhhHhhcCCCeEEEecccccccccC-HHH--HHHHHh--cCCCccccCCCcccceeeeecccceEEEeccCCCcccccC
Confidence 66665 46899999999999653210 000 000000 01111000 000001 000011
Q ss_pred -CEEEEEEcCCCC---------CC-CChHHHHHHHHHHhh---ccCCCCC-eEEEEecccc--ccCCCcc------cccC
Q 012311 275 -SAHIIVLSSYSP---------FV-KYTPQWEWLREELKK---VDREKTP-WLIVLMHVPI--YNSNEAH------FMEG 331 (466)
Q Consensus 275 -~v~fI~Lds~~~---------~~-~~~~Q~~WL~~~L~~---~~r~~~~-w~IV~~H~P~--y~s~~~h------~~~~ 331 (466)
--.+++||+..+ |+ ....|..||+..-.+ .+..-.| -=++++|.|+ |..-... ..|+
T Consensus 201 sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~ 280 (379)
T KOG1432|consen 201 SVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEG 280 (379)
T ss_pred ceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceeecc
Confidence 013455666431 22 246799999988733 1112223 3578889987 3221110 1121
Q ss_pred ---HHHHHHHHHHHH-HcCCcEEEecccceecCCcccccCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccE
Q 012311 332 ---ESMRAAFESWFV-RYKVDYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGH 407 (466)
Q Consensus 332 ---~~~r~~l~~ll~-~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv~G~gG~~~~~~~~~~~~~p~~sa~~~~~~G~ 407 (466)
......+...|. .-+|+.+++||+| .|+-|.. -++.+++.=|+|+.. |.+. ++.|-. +-
T Consensus 281 ~~~~~~~sg~~~~L~~r~~Vk~vf~GHdH--vNDfC~~---~k~~~wlCygGgaGy-ggYg-----~~gw~R------r~ 343 (379)
T KOG1432|consen 281 VSASKHNSGFLTTLVNRGNVKGVFCGHDH--VNDFCGE---LKGELWLCYGGGAGY-GGYG-----IGGWER------RA 343 (379)
T ss_pred ccccccccHHHHHHHhccCcceEEecccc--ccceecc---cCCeEEEEecCCCcc-CCcC-----cCCccc------ce
Confidence 112234555666 8899999999998 3566753 344588887766554 2221 223321 12
Q ss_pred EEEEEe-cCCeEEEEEEEcCCCceeeeeeEEEE
Q 012311 408 STLEIK-NRTHAFYHWNRNDDGKKVATDSFILH 439 (466)
Q Consensus 408 ~~l~v~-n~t~l~~~~~~~~dg~~~~~D~~~i~ 439 (466)
-+++++ +...+ -+|.|.+|+...++|.-.+.
T Consensus 344 Rv~e~d~~~~~I-kTWKRl~d~~~~~~D~q~l~ 375 (379)
T KOG1432|consen 344 RVFELDLNKDRI-KTWKRLDDKPLSVIDYQLLY 375 (379)
T ss_pred EEEEcccccccc-ceeeecCCCCcceeeeEEEe
Confidence 345553 33434 37999888776566765543
No 32
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.06 E-value=2.2e-09 Score=91.56 Aligned_cols=112 Identities=21% Similarity=0.178 Sum_probs=79.5
Q ss_pred EEEccCCCCCCcHHHHH---HHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceeeccC
Q 012311 163 GIIGDLGQTYNSLSTLE---HYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMT 239 (466)
Q Consensus 163 ~v~GD~g~~~~~~~tl~---~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~~~~ 239 (466)
+++||++.+........ ...+.++++|+++||+++.... ..+..+...........|++.++||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~GNHD----- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPD------PEEVLAAALALLLLLGIPVYVVPGNHD----- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCC------chHHHHHHHHHhhcCCCCEEEeCCCce-----
Confidence 36899998765443332 3334499999999999985432 223333323444456899999999999
Q ss_pred cCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEeccc
Q 012311 240 YMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVP 319 (466)
Q Consensus 240 ~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P 319 (466)
|+++|.|
T Consensus 70 -------------------------------------------------------------------------i~~~H~~ 76 (131)
T cd00838 70 -------------------------------------------------------------------------ILLTHGP 76 (131)
T ss_pred -------------------------------------------------------------------------EEEeccC
Confidence 9999999
Q ss_pred cccCCCcccccCHHHHHHHHHHHHHcCCcEEEeccccee
Q 012311 320 IYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNI 358 (466)
Q Consensus 320 ~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~ 358 (466)
++.............+..+..++.+++++.+++||.|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~ 115 (131)
T cd00838 77 PYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVY 115 (131)
T ss_pred CCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeecc
Confidence 987654321112225789999999999999999998854
No 33
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=98.97 E-value=5.5e-09 Score=99.83 Aligned_cols=143 Identities=20% Similarity=0.222 Sum_probs=92.9
Q ss_pred EEEEEccCCCCCCcHHHHHHHH----HhCCCEEEEcccccccccccc-----------------c---ccchhHHHH--H
Q 012311 161 KFGIIGDLGQTYNSLSTLEHYM----ESGAQTVLFLGDLSYADRYQF-----------------I---DVGVRWDSW--G 214 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~tl~~~~----~~~~dfvl~~GDl~Y~~~~~~-----------------~---d~~~~wd~~--~ 214 (466)
||++.++.+...........+. +.+|||+|++||.+|++.... . ++..++..+ .
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~ 80 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSD 80 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCC
Confidence 5788888877665555555554 569999999999999986321 1 112222222 2
Q ss_pred HHHHHHhhcCCeEEcCCCceeeccCcCCc-------c------cccccccccccCCCCCCC--CCCCceEEEeeCCE-EE
Q 012311 215 RFVERSAAYQPWIWSAGNHEIEYMTYMGE-------V------VPFKSYLHRYPTPHLASK--SSSPLWYAIRRASA-HI 278 (466)
Q Consensus 215 ~~~~~l~~~~P~~~~~GNHE~~~~~~~~~-------~------~~f~~y~~rf~~P~~~~~--~~~~~yYsf~~g~v-~f 278 (466)
..++.+.+.+|++.++++||+..+..... . ....+|......+..... ...+.|++|.+|.. .|
T Consensus 81 p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~ 160 (228)
T cd07389 81 PDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDL 160 (228)
T ss_pred HHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceE
Confidence 34567778999999999999975532210 0 012334444333332222 34579999999996 99
Q ss_pred EEEcCCC---CCCCChHHHHHHHHHHhh
Q 012311 279 IVLSSYS---PFVKYTPQWEWLREELKK 303 (466)
Q Consensus 279 I~Lds~~---~~~~~~~Q~~WL~~~L~~ 303 (466)
|+||++. .|+....+.++|.+.|+.
T Consensus 161 ~~lD~R~~Rd~W~~~~~er~~l~~~~~~ 188 (228)
T cd07389 161 ILLDTRTYRDSWDGYPAERERLLDLLAK 188 (228)
T ss_pred EEEecccccccccccHHHHHHHHHHHHH
Confidence 9999975 355567778888887755
No 34
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=98.80 E-value=9.6e-08 Score=93.92 Aligned_cols=158 Identities=15% Similarity=0.055 Sum_probs=89.7
Q ss_pred CCeEEEEEccCCCCCC-cHHHHH----HHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCC
Q 012311 158 ASYKFGIIGDLGQTYN-SLSTLE----HYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGN 232 (466)
Q Consensus 158 ~~~~f~v~GD~g~~~~-~~~tl~----~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GN 232 (466)
.++|+++++|+|.... ....++ .+.+.+||+|+++||++..+. ...++.+.+.++.+.+..|++.++||
T Consensus 48 ~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~------~~~~~~~~~~L~~L~~~~pv~~V~GN 121 (271)
T PRK11340 48 APFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDM------PLNFSAFSDVLSPLAECAPTFACFGN 121 (271)
T ss_pred CCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCc------cccHHHHHHHHHHHhhcCCEEEecCC
Confidence 4799999999998632 222233 344459999999999985221 12345666777777767899999999
Q ss_pred ceeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCC--EEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCC
Q 012311 233 HEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRAS--AHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTP 310 (466)
Q Consensus 233 HE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~--v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~~ 310 (466)
||+...... ...+...+. ..+-.--.+....+..++ +.++.+|.... +... ..+.+++ + .
T Consensus 122 HD~~~~~~~-----~~~~~~~l~--~~gi~lL~n~~~~i~~~~~~i~i~G~~d~~~-~~~~-----~~~~~~~----~-~ 183 (271)
T PRK11340 122 HDRPVGTEK-----NHLIGETLK--SAGITVLFNQATVIATPNRQFELVGTGDLWA-GQCK-----PPPASEA----N-L 183 (271)
T ss_pred CCcccCccc-----hHHHHHHHH--hcCcEEeeCCeEEEeeCCcEEEEEEecchhc-cCCC-----hhHhcCC----C-C
Confidence 997532100 001111110 000000113344555543 56666654211 1111 1112222 2 3
Q ss_pred eEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccc
Q 012311 311 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHY 356 (466)
Q Consensus 311 w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~ 356 (466)
..|++.|.|-+- +.+.+.++|+.+|||+|
T Consensus 184 ~~IlL~H~P~~~-----------------~~~~~~~~dL~lsGHTH 212 (271)
T PRK11340 184 PRLVLAHNPDSK-----------------EVMRDEPWDLMLCGHTH 212 (271)
T ss_pred CeEEEEcCCChh-----------------HhhccCCCCEEEecccc
Confidence 478899999642 12346799999999998
No 35
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.74 E-value=7e-08 Score=84.59 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=71.2
Q ss_pred EEEEEccCCCCCCcHHHHHHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCC-eEEcCCCceeeccC
Q 012311 161 KFGIIGDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP-WIWSAGNHEIEYMT 239 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~tl~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P-~~~~~GNHE~~~~~ 239 (466)
||+++||++.... .+...++|+++++||++.... ...++.+.+.++.+ ..| +++++||||...
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~~~------~~~~~~~~~~l~~~--~~~~~~~v~GNHD~~~-- 64 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTERGT------LEELQKFLDWLKSL--PHPHKIVIAGNHDLTL-- 64 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCCCC------HHHHHHHHHHHHhC--CCCeEEEEECCCCCcC--
Confidence 5899999997654 222348999999999985321 22233444444433 233 578999999531
Q ss_pred cCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEeccc
Q 012311 240 YMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVP 319 (466)
Q Consensus 240 ~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P 319 (466)
. . ..+.|+++|.|
T Consensus 65 --------~-------------------------------------------------------~----~~~~ilv~H~~ 77 (135)
T cd07379 65 --------D-------------------------------------------------------P----EDTDILVTHGP 77 (135)
T ss_pred --------C-------------------------------------------------------C----CCCEEEEECCC
Confidence 0 1 12468889999
Q ss_pred cccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccce
Q 012311 320 IYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYN 357 (466)
Q Consensus 320 ~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~ 357 (466)
++............-.+.+..++.++++++.++||.|.
T Consensus 78 p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~ 115 (135)
T cd07379 78 PYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHE 115 (135)
T ss_pred CCcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCC
Confidence 98754321110001113455677899999999999874
No 36
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.72 E-value=8.3e-08 Score=85.51 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=86.3
Q ss_pred eEEEEEccCCCCCCcH-HHHHHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceeecc
Q 012311 160 YKFGIIGDLGQTYNSL-STLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYM 238 (466)
Q Consensus 160 ~~f~v~GD~g~~~~~~-~tl~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~~~ 238 (466)
+||+++||++...... +.++.+ +++|+|+++||++.. .++.+.++.+ |++++.||||...
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~------------~~~~~~~~~~----~~~~v~GNHD~~~- 61 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP------------EEVLELLRDI----PVYVVRGNHDNWA- 61 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH------------HHHHHHHHHH----EEEEE--CCHSTH-
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH------------HHHHHHHhcC----CEEEEeCCccccc-
Confidence 5899999999864332 223333 479999999998841 3344444443 9999999999532
Q ss_pred CcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhc-cCCCCCeEEEEec
Q 012311 239 TYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKV-DREKTPWLIVLMH 317 (466)
Q Consensus 239 ~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~-~r~~~~w~IV~~H 317 (466)
+...... .. +... ...-..+.|++.|
T Consensus 62 -----------~~~~~~~---------~~---------------------------------~~~~~~~~~~~~~i~~~H 88 (156)
T PF12850_consen 62 -----------FPNENDE---------EY---------------------------------LLDALRLTIDGFKILLSH 88 (156)
T ss_dssp -----------HHSEECT---------CS---------------------------------SHSEEEEEETTEEEEEES
T ss_pred -----------chhhhhc---------cc---------------------------------cccceeeeecCCeEEEEC
Confidence 1110000 00 1110 0012245788888
Q ss_pred cccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceecCCcccccCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCc
Q 012311 318 VPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDY 397 (466)
Q Consensus 318 ~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv~G~gG~~~~~~~~~~~~~p~~ 397 (466)
.+.+.... ..+.+..++...+++++++||.|.-.. ...+++.++..|+-+.... .
T Consensus 89 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~GH~H~~~~------~~~~~~~~~~~Gs~~~~~~-----~------ 143 (156)
T PF12850_consen 89 GHPYDVQW--------DPAELREILSRENVDLVLHGHTHRPQV------FKIGGIHVINPGSIGGPRH-----G------ 143 (156)
T ss_dssp STSSSSTT--------THHHHHHHHHHTTSSEEEESSSSSEEE------EEETTEEEEEE-GSSS-SS-----S------
T ss_pred CCCccccc--------ChhhhhhhhcccCCCEEEcCCcccceE------EEECCEEEEECCcCCCCCC-----C------
Confidence 87766321 122455778899999999999885321 1245688888887654321 0
Q ss_pred cceeeCcccEEEEEEec
Q 012311 398 SAFREASYGHSTLEIKN 414 (466)
Q Consensus 398 sa~~~~~~G~~~l~v~n 414 (466)
+ .-+|..+++.+
T Consensus 144 ----~-~~~~~i~~~~~ 155 (156)
T PF12850_consen 144 ----D-QSGYAILDIED 155 (156)
T ss_dssp ----S-SEEEEEEEETT
T ss_pred ----C-CCEEEEEEEec
Confidence 1 35788888854
No 37
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.71 E-value=1.7e-07 Score=90.52 Aligned_cols=174 Identities=15% Similarity=0.084 Sum_probs=94.1
Q ss_pred EEEEEccCCCCCCcHHH----HHHHH--HhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhc-CCeEEcCCCc
Q 012311 161 KFGIIGDLGQTYNSLST----LEHYM--ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY-QPWIWSAGNH 233 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~t----l~~~~--~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~-~P~~~~~GNH 233 (466)
++++++|+|.+...... ++.+. +.++|+|+++||++..-...... ........+.++.+... +|++.++|||
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~-~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDP-SPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcC-CHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 78999999987543222 22232 23899999999999531110000 12223445566666544 8999999999
Q ss_pred eeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEE
Q 012311 234 EIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLI 313 (466)
Q Consensus 234 E~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~~w~I 313 (466)
|.... ..+.....+. .-+....++.++.++++.-... +......++++++.+.. ||.+
T Consensus 81 D~~~~---------~~~~~~~g~~------~l~~~~~~~~~g~~i~l~HGd~-~~~~d~~y~~~r~~~r~------~~~~ 138 (241)
T PRK05340 81 DFLLG---------KRFAKAAGMT------LLPDPSVIDLYGQRVLLLHGDT-LCTDDKAYQRFRRKVRN------PWLQ 138 (241)
T ss_pred chhhh---------HHHHHhCCCE------EeCCcEEEEECCEEEEEECCcc-cccCCHHHHHHHHHHhC------HHHH
Confidence 97421 1111111100 0012345677777777765432 11234556666555544 2333
Q ss_pred EEeccccccCCCc------------cc-ccC---HHHHHHHHHHHHHcCCcEEEecccce
Q 012311 314 VLMHVPIYNSNEA------------HF-MEG---ESMRAAFESWFVRYKVDYRISNLHYN 357 (466)
Q Consensus 314 V~~H~P~y~s~~~------------h~-~~~---~~~r~~l~~ll~~y~Vd~~~~gh~~~ 357 (466)
.++|.+++..... +. ... ......+..++.+++++.+++||.|.
T Consensus 139 ~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~ 198 (241)
T PRK05340 139 WLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHR 198 (241)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccC
Confidence 3444444432100 00 000 00124677899999999999999873
No 38
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.66 E-value=4.6e-07 Score=86.67 Aligned_cols=195 Identities=15% Similarity=0.136 Sum_probs=98.0
Q ss_pred eEEEEEccCCCCCCcHHHHHHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceeeccC
Q 012311 160 YKFGIIGDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMT 239 (466)
Q Consensus 160 ~~f~v~GD~g~~~~~~~tl~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~~~~ 239 (466)
+|++++||+|..... ...+.+.+.+||+|+++||++.. . ..+.+.+..+ ..|++.++||||.....
T Consensus 1 ~rIa~isDiHg~~~~-~~~~~l~~~~pD~Vl~~GDi~~~--------~---~~~~~~l~~l--~~p~~~V~GNHD~~~~~ 66 (238)
T cd07397 1 LRIAIVGDVHGQWDL-EDIKALHLLQPDLVLFVGDFGNE--------S---VQLVRAISSL--PLPKAVILGNHDAWYDA 66 (238)
T ss_pred CEEEEEecCCCCchH-HHHHHHhccCCCEEEECCCCCcC--------h---HHHHHHHHhC--CCCeEEEcCCCcccccc
Confidence 589999999975432 22334444589999999999831 1 1223333332 47999999999985431
Q ss_pred cCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCC----------------CCCC--ChHHHHHHHHHH
Q 012311 240 YMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYS----------------PFVK--YTPQWEWLREEL 301 (466)
Q Consensus 240 ~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~----------------~~~~--~~~Q~~WL~~~L 301 (466)
.. +. ....+......-.+ .-=.|=..++....+.++.++. -|+. ..+-.+.+.+.+
T Consensus 67 ~~-~~-k~~~l~~~L~~lg~----~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~ 140 (238)
T cd07397 67 TF-RK-KGDRVQEQLELLGD----LHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAA 140 (238)
T ss_pred cc-cc-hHHHHHHHHHHhCC----cEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 10 00 00111111110000 0000111112222233333321 0111 122334444545
Q ss_pred hhccCCCCCeEEEEeccccccCCCc---------cc----ccCHHHHHHHHHHHHHcCCcEEEecccce-ecCCcc---c
Q 012311 302 KKVDREKTPWLIVLMHVPIYNSNEA---------HF----MEGESMRAAFESWFVRYKVDYRISNLHYN-ISSGDC---F 364 (466)
Q Consensus 302 ~~~~r~~~~w~IV~~H~P~y~s~~~---------h~----~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~-~~~~~~---~ 364 (466)
+.++ ...+ .|++.|.++...++. .. -..+++++++..+-..-.++++++||.|+ +..+.- .
T Consensus 141 ~~~~-~~~~-~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~~~~r~~ 218 (238)
T cd07397 141 KKAP-PDLP-LILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRGKGLRNM 218 (238)
T ss_pred hhcC-CCCC-eEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCccCcccccccccce
Confidence 4332 2333 588899999766421 10 12367777776655445578999999775 333321 0
Q ss_pred ccCCCCCcEEEE
Q 012311 365 PVPDKSAPVYIT 376 (466)
Q Consensus 365 ~~~~~~g~vyiv 376 (466)
-..+..|++|+-
T Consensus 219 ~~~~~~gt~y~N 230 (238)
T cd07397 219 IAVDREGTVYLN 230 (238)
T ss_pred eeecCCCeEEEe
Confidence 113567899974
No 39
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.53 E-value=3.7e-07 Score=84.60 Aligned_cols=102 Identities=21% Similarity=0.285 Sum_probs=66.2
Q ss_pred CCCEEEEcccccccccccccccchhHHHHHHHHHHH---hhcCCeEEcCCCceeeccCcCCcccccccccccccCCCCCC
Q 012311 185 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS---AAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS 261 (466)
Q Consensus 185 ~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l---~~~~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~ 261 (466)
+||+|+++||++.+..... ..+|.+..+.+.+. ...+|++.++||||++.... .+...-..||.
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~---~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~----~~~~~~v~RF~------ 108 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIAN---DDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEE----DPIESKIRRFE------ 108 (195)
T ss_pred CCCEEEEeccccCCCCCCC---HHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCC----CcCHHHHHHHH------
Confidence 9999999999997644321 33444433333333 24689999999999974210 11112223442
Q ss_pred CCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHH
Q 012311 262 KSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESW 341 (466)
Q Consensus 262 ~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~l 341 (466)
.+| |++.|.|+..... . .+..+
T Consensus 109 -----~~F-------------------------------------------i~lsH~P~~~~~~------~----~~~~~ 130 (195)
T cd08166 109 -----KYF-------------------------------------------IMLSHVPLLAEGG------Q----ALKHV 130 (195)
T ss_pred -----Hhh-------------------------------------------eeeeccccccccc------H----HHHHH
Confidence 111 9999999976332 1 55678
Q ss_pred HHHcCCcEEEecccce
Q 012311 342 FVRYKVDYRISNLHYN 357 (466)
Q Consensus 342 l~~y~Vd~~~~gh~~~ 357 (466)
+.++.++.++++|.|.
T Consensus 131 ~~~~~p~~Ifs~H~H~ 146 (195)
T cd08166 131 VTDLDPDLIFSAHRHK 146 (195)
T ss_pred HHhcCceEEEEcCccc
Confidence 8999999999999874
No 40
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.50 E-value=6.5e-07 Score=81.88 Aligned_cols=56 Identities=29% Similarity=0.534 Sum_probs=36.2
Q ss_pred HHHHHh-CCCEEEEcccccccccccccccchhHHHHHHHHHHHh-------hcCCeEEcCCCceeec
Q 012311 179 EHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-------AYQPWIWSAGNHEIEY 237 (466)
Q Consensus 179 ~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~-------~~~P~~~~~GNHE~~~ 237 (466)
..+.+. +||+|+++||++...... + ...|.+..+.+..+. ..+|+++++||||+..
T Consensus 38 ~~~i~~~~pd~vi~lGDl~d~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 38 KTALQRLKPDVVLFLGDLFDGGRIA--D-SEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred HHHHHhcCCCEEEEeccccCCcEeC--C-HHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 334333 999999999999643221 1 234554444443332 2689999999999864
No 41
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.45 E-value=7.1e-07 Score=80.40 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=33.8
Q ss_pred hCCCEEEEcccccccccccccccchhHHHHHHHHHHHh---hcCCeEEcCCCceee
Q 012311 184 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA---AYQPWIWSAGNHEIE 236 (466)
Q Consensus 184 ~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~---~~~P~~~~~GNHE~~ 236 (466)
.+||+|+++||++...... . ...|..+...+..+. ..+|+++++||||..
T Consensus 37 ~~pd~vv~~GDl~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 37 LQPDVVFVLGDLFDEGKWS--T-DEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred cCCCEEEECCCCCCCCccC--C-HHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 3999999999999643221 1 345655444443332 258999999999974
No 42
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.40 E-value=1.9e-06 Score=77.12 Aligned_cols=131 Identities=17% Similarity=0.101 Sum_probs=79.0
Q ss_pred EEEEEccCCCCCCcHHHHHHHHHh--CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceeecc
Q 012311 161 KFGIIGDLGQTYNSLSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYM 238 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~tl~~~~~~--~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~~~ 238 (466)
|+++++|++... ..++++.+. ++|.|+++||++..... . . +....|++.+.||||...
T Consensus 1 ~i~~isD~H~~~---~~~~~~~~~~~~~d~ii~~GD~~~~~~~-----~-~----------~~~~~~~~~V~GNhD~~~- 60 (155)
T cd00841 1 KIGVISDTHGSL---ELLEKALELFGDVDLIIHAGDVLYPGPL-----N-E----------LELKAPVIAVRGNCDGEV- 60 (155)
T ss_pred CEEEEecCCCCH---HHHHHHHHHhcCCCEEEECCcccccccc-----c-h----------hhcCCcEEEEeCCCCCcC-
Confidence 588999999754 333444332 49999999999853221 1 1 234679999999999631
Q ss_pred CcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEecc
Q 012311 239 TYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHV 318 (466)
Q Consensus 239 ~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~ 318 (466)
+ ...+| ....++. ..++|++.|.
T Consensus 61 -----------~--~~~~p---------~~~~~~~-----------------------------------~g~~i~v~Hg 83 (155)
T cd00841 61 -----------D--FPILP---------EEAVLEI-----------------------------------GGKRIFLTHG 83 (155)
T ss_pred -----------C--cccCC---------ceEEEEE-----------------------------------CCEEEEEECC
Confidence 0 00011 1111111 1246788888
Q ss_pred ccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceecCCcccccCCCCCcEEEEeCCCCCC
Q 012311 319 PIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQ 383 (466)
Q Consensus 319 P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv~G~gG~~ 383 (466)
+.+..... .+ . ..++.+.++|++++||.|.... ...+++.+|-.|+.|..
T Consensus 84 ~~~~~~~~-------~~-~-~~~~~~~~~d~vi~GHtH~~~~------~~~~~~~~inpGs~~~~ 133 (155)
T cd00841 84 HLYGVKNG-------LD-R-LYLAKEGGADVVLYGHTHIPVI------EKIGGVLLLNPGSLSLP 133 (155)
T ss_pred cccccccc-------hh-h-hhhhhhcCCCEEEECcccCCcc------EEECCEEEEeCCCccCc
Confidence 77653211 01 1 4567788999999999884321 12357888888887754
No 43
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.37 E-value=8.7e-06 Score=73.26 Aligned_cols=61 Identities=18% Similarity=0.086 Sum_probs=41.2
Q ss_pred eEEEEEccCCCCCCcHHHHHH-HHHh-CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCcee
Q 012311 160 YKFGIIGDLGQTYNSLSTLEH-YMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 235 (466)
Q Consensus 160 ~~f~v~GD~g~~~~~~~tl~~-~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~ 235 (466)
+|+++++|+|......+.+.+ +... ++|.|+++||++- . ...+.++.+ ..|++.+.||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~---------~----~~~~~l~~~--~~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLTS---------P----FVLKEFEDL--AAKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCCC---------H----HHHHHHHHh--CCceEEEccCCCc
Confidence 479999999976544343333 3444 7999999999981 1 122333322 4589999999995
No 44
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.33 E-value=4.7e-06 Score=72.54 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=30.7
Q ss_pred eEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccce
Q 012311 311 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYN 357 (466)
Q Consensus 311 w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~ 357 (466)
.+|+++|+|++........ ...-.+.+..++.+++++.+++||.|.
T Consensus 57 ~~Ilv~H~pp~~~~~~~~~-~~~g~~~l~~~l~~~~~~~vl~GH~H~ 102 (129)
T cd07403 57 VDILLTHAPPAGIGDGEDF-AHRGFEAFLDFIDRFRPKLFIHGHTHL 102 (129)
T ss_pred cCEEEECCCCCcCcCcccc-cccCHHHHHHHHHHHCCcEEEEcCcCC
Confidence 3588899998754321100 011245677888999999999999874
No 45
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.30 E-value=1.7e-05 Score=76.17 Aligned_cols=72 Identities=22% Similarity=0.177 Sum_probs=45.6
Q ss_pred EEEccCCCCCCcH----HHHHHHHHh--CCCEEEEcccccccccccccc-cchhHHHHHHHHHHHhh-cCCeEEcCCCce
Q 012311 163 GIIGDLGQTYNSL----STLEHYMES--GAQTVLFLGDLSYADRYQFID-VGVRWDSWGRFVERSAA-YQPWIWSAGNHE 234 (466)
Q Consensus 163 ~v~GD~g~~~~~~----~tl~~~~~~--~~dfvl~~GDl~Y~~~~~~~d-~~~~wd~~~~~~~~l~~-~~P~~~~~GNHE 234 (466)
++++|+|.+.... ..++.+.+. +||+|+++||++.. +...+ .......+.+.++.+.. .+|++.++||||
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~--~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD 79 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEA--WIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRD 79 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceecc--ccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCc
Confidence 5799999875422 233444432 79999999999952 21100 01222444556666654 589999999999
Q ss_pred ee
Q 012311 235 IE 236 (466)
Q Consensus 235 ~~ 236 (466)
..
T Consensus 80 ~~ 81 (231)
T TIGR01854 80 FL 81 (231)
T ss_pred hh
Confidence 74
No 46
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.26 E-value=0.00012 Score=67.28 Aligned_cols=167 Identities=15% Similarity=0.122 Sum_probs=93.9
Q ss_pred EEEEEccCCCCCCcH---HHHHHHHH-hCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceee
Q 012311 161 KFGIIGDLGQTYNSL---STLEHYME-SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~---~tl~~~~~-~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
++++++|+|...... ..+.++.+ .++|.|+|+||++.. ..+ +.++.+ ..|++.+.||||..
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~~---------~~~----~~l~~~--~~~~~~V~GN~D~~ 65 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCSK---------ETY----DYLKTI--APDVHIVRGDFDEN 65 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCCH---------HHH----HHHHhh--CCceEEEECCCCcc
Confidence 478999999554322 23344444 379999999999841 112 223332 24799999999953
Q ss_pred ccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEe
Q 012311 237 YMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLM 316 (466)
Q Consensus 237 ~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~~w~IV~~ 316 (466)
. .+|. ...+++++. +|.+.
T Consensus 66 ~-----------------~lp~---------~~~~~~~g~-----------------------------------~i~l~ 84 (178)
T cd07394 66 L-----------------NYPE---------TKVITVGQF-----------------------------------KIGLI 84 (178)
T ss_pred c-----------------cCCC---------cEEEEECCE-----------------------------------EEEEE
Confidence 1 1231 123444443 44444
Q ss_pred ccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceecCCcccccCCCCCcEEEEeCCCCCCCCCCCCCCCCCCC
Q 012311 317 HVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPD 396 (466)
Q Consensus 317 H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv~G~gG~~~~~~~~~~~~~p~ 396 (466)
|--.+... .. .+.+..++.+.++|++++||.|.-.. ...++..+|-.|+.|.+.+. +.
T Consensus 85 HG~~~~~~-----~~---~~~~~~~~~~~~~dvii~GHTH~p~~------~~~~g~~viNPGSv~~~~~~--------~~ 142 (178)
T cd07394 85 HGHQVVPW-----GD---PDSLAALQRQLDVDILISGHTHKFEA------FEHEGKFFINPGSATGAFSP--------LD 142 (178)
T ss_pred ECCcCCCC-----CC---HHHHHHHHHhcCCCEEEECCCCcceE------EEECCEEEEECCCCCCCCCC--------CC
Confidence 53222111 01 12344566778999999999984211 12346888888887644210 00
Q ss_pred ccceeeCcccEEEEEEecCCeEEEEEEEcCCCce
Q 012311 397 YSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKK 430 (466)
Q Consensus 397 ~sa~~~~~~G~~~l~v~n~t~l~~~~~~~~dg~~ 430 (466)
......|++|++.++ .+.+++++-.++++
T Consensus 143 ----~~~~~syail~~~~~-~~~~~~~~l~~~~~ 171 (178)
T cd07394 143 ----PNVIPSFVLMDIQGS-KVVTYVYQLIDGEV 171 (178)
T ss_pred ----CCCCCeEEEEEecCC-eEEEEEEEEECCcE
Confidence 011235889998544 46778876545543
No 47
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.23 E-value=1.9e-05 Score=76.55 Aligned_cols=174 Identities=13% Similarity=0.057 Sum_probs=87.3
Q ss_pred eEEEEEccCCCCC------CcHHH----HHHHHHhCCC-EEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEE
Q 012311 160 YKFGIIGDLGQTY------NSLST----LEHYMESGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIW 228 (466)
Q Consensus 160 ~~f~v~GD~g~~~------~~~~t----l~~~~~~~~d-fvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~ 228 (466)
++|+.++|++... ..... ++++.+.++| +++..||++....... +......++.+...-+-+.
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~------~~~~~~~~~~l~~~g~d~~ 74 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST------ATKGEANIELMNALGYDAV 74 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh------ccCCcHHHHHHHhcCCCEE
Confidence 5899999999553 23333 3444445677 7799999986433211 1111222232222234567
Q ss_pred cCCCceeeccCcCCcccccccccccccCCC-------CC---CCCCCCceEEEeeCCE--EEEEEcCCCC--C---C---
Q 012311 229 SAGNHEIEYMTYMGEVVPFKSYLHRYPTPH-------LA---SKSSSPLWYAIRRASA--HIIVLSSYSP--F---V--- 288 (466)
Q Consensus 229 ~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~-------~~---~~~~~~~yYsf~~g~v--~fI~Lds~~~--~---~--- 288 (466)
++||||++.... .+.........|. .+ .......|--++.+++ -|+.+.+... + +
T Consensus 75 ~~GNHe~d~g~~-----~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~ 149 (252)
T cd00845 75 TIGNHEFDYGLD-----ALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWII 149 (252)
T ss_pred eeccccccccHH-----HHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCccc
Confidence 889999874321 1111111111110 00 0011234666788875 4555544221 0 0
Q ss_pred --CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceec
Q 012311 289 --KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNIS 359 (466)
Q Consensus 289 --~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~ 359 (466)
......+-+++..+. .+.+...+|++.|.|... .. ++...+ .+||++++||.|...
T Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~~D~vIvl~H~g~~~--------~~----~la~~~--~giDlvlggH~H~~~ 207 (252)
T cd00845 150 GLPFEDLAEAVAVAEEL-LAEGADVIILLSHLGLDD--------DE----ELAEEV--PGIDVILGGHTHHLL 207 (252)
T ss_pred CceecCHHHHHHHHHHH-HhCCCCEEEEEeccCccc--------hH----HHHhcC--CCccEEEcCCcCccc
Confidence 011223334332222 125778899999977643 01 111112 699999999998643
No 48
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.21 E-value=8.9e-06 Score=80.26 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=57.4
Q ss_pred CCCeEEEEEccCCCCCCc---HHHHHHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCc
Q 012311 157 DASYKFGIIGDLGQTYNS---LSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNH 233 (466)
Q Consensus 157 ~~~~~f~v~GD~g~~~~~---~~tl~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNH 233 (466)
..+++++.++|+|..... .+.+..+....||+|+.+||++..+. .+.+..+.+.++++.+..+++++.|||
T Consensus 42 ~~~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~------~~~~~~~~~~L~~L~~~~gv~av~GNH 115 (284)
T COG1408 42 LQGLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDR------PPGVAALALFLAKLKAPLGVFAVLGNH 115 (284)
T ss_pred cCCeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCC------CCCHHHHHHHHHhhhccCCEEEEeccc
Confidence 458899999999987644 22233444458899999999997412 345577788889999999999999999
Q ss_pred eeec
Q 012311 234 EIEY 237 (466)
Q Consensus 234 E~~~ 237 (466)
|+..
T Consensus 116 d~~~ 119 (284)
T COG1408 116 DYGV 119 (284)
T ss_pred cccc
Confidence 9863
No 49
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.20 E-value=0.00011 Score=75.96 Aligned_cols=107 Identities=13% Similarity=0.013 Sum_probs=55.7
Q ss_pred CeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceecCCcccccCCCCCcEEEEeCCCCCCCCCCCC
Q 012311 310 PWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGK 389 (466)
Q Consensus 310 ~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv~G~gG~~~~~~~~ 389 (466)
.+.|++.|+....... ...+ -+.+| ..++|++..||.|.-. ..+...+....+|+ - .|+.... .
T Consensus 201 ~fnIlv~Hq~~~~~~~-----~~~i---pe~ll-p~~fDYValGHiH~~~---~~p~~~~~~~~~V~-y-pGS~v~t--S 264 (405)
T TIGR00583 201 WFNLLVLHQNHAAHTS-----TSFL---PESFI-PDFFDLVIWGHEHECL---PDPVYNPSDGFYVL-Q-PGSTVAT--S 264 (405)
T ss_pred ceEEEEeCceecCCCC-----cccC---chhhh-hccCcEEEeccccccc---ccccccCCCCceEE-E-CCCcccc--c
Confidence 3579999998743211 1111 13444 4579999999987311 01111122222332 1 2343321 1
Q ss_pred CCCCCCCccceeeCcccEEEEEEecCCeEEEEEEEcCCCceeeeeeEEEEe
Q 012311 390 FRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHN 440 (466)
Q Consensus 390 ~~~~~p~~sa~~~~~~G~~~l~v~n~t~l~~~~~~~~dg~~~~~D~~~i~k 440 (466)
+.+ -....-|+..|+|.+ ..+.++++.-+.-...+..++.+..
T Consensus 265 f~e-------~E~~~Kgv~lVeI~~-~~~~~~~IpL~~vRpf~~~~i~l~~ 307 (405)
T TIGR00583 265 LTP-------GEALPKHVFILNIKG-RKFASKPIPLQTVRPFVMKEILLDK 307 (405)
T ss_pred ccc-------cccCCCEEEEEEEcC-CeeEEEEeeCCCcccEEEEEEEhhh
Confidence 111 001335889999964 4577888875555555566666654
No 50
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.17 E-value=1.1e-05 Score=75.32 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=84.1
Q ss_pred CeEEEEEccCCCCCCcHHHHHH-HHHhCCCEEEEcccccccccccccccchhHH--------------------------
Q 012311 159 SYKFGIIGDLGQTYNSLSTLEH-YMESGAQTVLFLGDLSYADRYQFIDVGVRWD-------------------------- 211 (466)
Q Consensus 159 ~~~f~v~GD~g~~~~~~~tl~~-~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd-------------------------- 211 (466)
+-++++++|..........+-. +.+.++|+++++||+.-+... ...|.
T Consensus 5 ~~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~-----~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 5 VRKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEAR-----SDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp --EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHH-----HHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred chhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccchh-----hhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 3478899998765443333333 334499999999999853221 12232
Q ss_pred HHHHHHHHHhhcCCeEEcCCCceeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCC-C---
Q 012311 212 SWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSP-F--- 287 (466)
Q Consensus 212 ~~~~~~~~l~~~~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~-~--- 287 (466)
.|++.+.. ..+|.+++|||||....-.+. .+|..-.-.|.-- .-..-+.+--|..-|+.+..+.. .
T Consensus 80 ~ff~~L~~--~~~p~~~vPG~~Dap~~~~lr-----~a~~~e~v~p~~~---~vH~sf~~~~g~y~v~G~GGeI~~~~~~ 149 (255)
T PF14582_consen 80 KFFRILGE--LGVPVFVVPGNMDAPERFFLR-----EAYNAEIVTPHIH---NVHESFFFWKGEYLVAGMGGEITDDQRE 149 (255)
T ss_dssp HHHHHHHC--C-SEEEEE--TTS-SHHHHHH-----HHHHCCCC-TTEE---E-CTCEEEETTTEEEEEE-SEEESSS-B
T ss_pred HHHHHHHh--cCCcEEEecCCCCchHHHHHH-----HHhccceecccee---eeeeeecccCCcEEEEecCccccCCCcc
Confidence 45555543 379999999999973210000 1222111112100 00011233334577777766421 0
Q ss_pred ---CC--ChHHHHHHHHHHhhccCCCCCeEEEEecccc-ccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccc
Q 012311 288 ---VK--YTPQWEWLREELKKVDREKTPWLIVLMHVPI-YNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHY 356 (466)
Q Consensus 288 ---~~--~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~-y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~ 356 (466)
.. ...-.+|..+-|..+ +..-+|+++|.|+ +..+..|.+ + +++..|+++|+=++++|||.|
T Consensus 150 ~~~~LrYP~weaey~lk~l~el---k~~r~IlLfhtpPd~~kg~~h~G-S----~~V~dlIk~~~P~ivl~Ghih 216 (255)
T PF14582_consen 150 EEFKLRYPAWEAEYSLKFLREL---KDYRKILLFHTPPDLHKGLIHVG-S----AAVRDLIKTYNPDIVLCGHIH 216 (255)
T ss_dssp CSSS-EEEHHHHHHHHGGGGGC---TSSEEEEEESS-BTBCTCTBTTS-B----HHHHHHHHHH--SEEEE-SSS
T ss_pred ccccccchHHHHHHHHHHHHhc---ccccEEEEEecCCccCCCccccc-H----HHHHHHHHhcCCcEEEecccc
Confidence 00 122345555666664 3445788899999 554433432 2 356679999999999999976
No 51
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.16 E-value=3.1e-06 Score=78.37 Aligned_cols=49 Identities=29% Similarity=0.446 Sum_probs=32.7
Q ss_pred CCCEEEEcccccccccccccccchhHHHH-HHHHHHHh-------------------hcCCeEEcCCCceeec
Q 012311 185 GAQTVLFLGDLSYADRYQFIDVGVRWDSW-GRFVERSA-------------------AYQPWIWSAGNHEIEY 237 (466)
Q Consensus 185 ~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~-~~~~~~l~-------------------~~~P~~~~~GNHE~~~ 237 (466)
+||.|+++||+.-. ++. . +..|.+. .++.+.+. ..+|++.++||||+..
T Consensus 44 ~Pd~V~fLGDLfd~-~w~-~--D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 44 KPDAVVVLGDLFSS-QWI-D--DEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred CCCEEEEeccccCC-Ccc-c--HHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 99999999999943 343 2 3445332 33333221 1489999999999975
No 52
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.15 E-value=0.00011 Score=68.92 Aligned_cols=171 Identities=17% Similarity=0.129 Sum_probs=100.7
Q ss_pred CeEEEEEccCCCCCCcHHHHHHHHHh-CCCEEEEcccccccccccccccchhHHHHHHH--HHHHh-hcCCeEEcCCCce
Q 012311 159 SYKFGIIGDLGQTYNSLSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRF--VERSA-AYQPWIWSAGNHE 234 (466)
Q Consensus 159 ~~~f~v~GD~g~~~~~~~tl~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~--~~~l~-~~~P~~~~~GNHE 234 (466)
.+|++.+.|.+........+..+.+. ++|+++.+||++|..-.+... -.+. ++.+. ..+|+++++||=|
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~-------~~~~~~~e~l~~~~~~v~avpGNcD 75 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEV-------AEELNKLEALKELGIPVLAVPGNCD 75 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCchHH-------HHhhhHHHHHHhcCCeEEEEcCCCC
Confidence 67999999999887665555544444 899999999999543322110 0111 44444 5799999999966
Q ss_pred eeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCC--CCC----CCh-HHHHHHHHHHhhccCC
Q 012311 235 IEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYS--PFV----KYT-PQWEWLREELKKVDRE 307 (466)
Q Consensus 235 ~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~--~~~----~~~-~Q~~WL~~~L~~~~r~ 307 (466)
...-. ....+ .... - -+ -+.+.|++.|+.+--.. ++. ..+ +-+.-|++-+++.+
T Consensus 76 ~~~v~--------~~l~~-~~~~-----v-~~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~-- 136 (226)
T COG2129 76 PPEVI--------DVLKN-AGVN-----V-HG--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKAD-- 136 (226)
T ss_pred hHHHH--------HHHHh-cccc-----c-cc--ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhccc--
Confidence 43210 00000 0000 0 01 56778888888854322 121 122 22444555555532
Q ss_pred CCCeEEEEeccccccCCCcccccC--HHHHHHHHHHHHHcCCcEEEecccce
Q 012311 308 KTPWLIVLMHVPIYNSNEAHFMEG--ESMRAAFESWFVRYKVDYRISNLHYN 357 (466)
Q Consensus 308 ~~~w~IV~~H~P~y~s~~~h~~~~--~~~r~~l~~ll~~y~Vd~~~~gh~~~ 357 (466)
.+-.|+++|+|+|..... ...+ ..-...+..++++.+.-+.+|||.|.
T Consensus 137 -~~~~Il~~HaPP~gt~~d-~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHE 186 (226)
T COG2129 137 -NPVNILLTHAPPYGTLLD-TPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHE 186 (226)
T ss_pred -CcceEEEecCCCCCcccc-CCCCccccchHHHHHHHHHhCCceEEEeeecc
Confidence 111299999999986543 1112 11134555688899999999999874
No 53
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.13 E-value=4e-05 Score=68.83 Aligned_cols=184 Identities=17% Similarity=0.192 Sum_probs=93.3
Q ss_pred EEEEccCCCCCCcHHHHHHHHHh--CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceeeccC
Q 012311 162 FGIIGDLGQTYNSLSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMT 239 (466)
Q Consensus 162 f~v~GD~g~~~~~~~tl~~~~~~--~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~~~~ 239 (466)
.-|||+.-.+. ..++-++.... .-|.|+..||++.+...... .+=++++..+-. -=+.+.||||+....
T Consensus 19 M~vFGe~W~gh-~ekI~k~W~~~v~~eDiVllpGDiSWaM~l~ea------~~Dl~~i~~LPG--~K~m~rGNHDYWw~s 89 (230)
T COG1768 19 MEVFGEPWSGH-HEKIKKHWRSKVSPEDIVLLPGDISWAMRLEEA------EEDLRFIGDLPG--TKYMIRGNHDYWWSS 89 (230)
T ss_pred eeecCCcccCc-hHHHHHHHHhcCChhhEEEecccchhheechhh------hhhhhhhhcCCC--cEEEEecCCccccch
Confidence 44566643333 23333444333 45899999999987655322 112445544322 136799999996531
Q ss_pred cCCcccccccccccccCCCCCCCCCCCceE---EEeeCCEEEEEE---cCC-CCCCCChHH--------HHHHHHHHhhc
Q 012311 240 YMGEVVPFKSYLHRYPTPHLASKSSSPLWY---AIRRASAHIIVL---SSY-SPFVKYTPQ--------WEWLREELKKV 304 (466)
Q Consensus 240 ~~~~~~~f~~y~~rf~~P~~~~~~~~~~yY---sf~~g~v~fI~L---ds~-~~~~~~~~Q--------~~WL~~~L~~~ 304 (466)
.. .-.+. +|. -.+| .|.+++.-++.. |+- .++...++| +.-|+.-+.++
T Consensus 90 -~s------kl~n~--lp~-------~l~~~n~~f~l~n~aI~G~RgW~s~~~~~e~~te~Deki~~RE~~RLrlsa~a~ 153 (230)
T COG1768 90 -IS------KLNNA--LPP-------ILFYLNNGFELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFLREIGRLRLSADAA 153 (230)
T ss_pred -HH------HHHhh--cCc-------hHhhhccceeEeeEEEEEeecccCCCCCcCccchhHHHHHHHHHHHHHHHHHHh
Confidence 10 00010 111 0111 244555333332 221 112223333 22233312221
Q ss_pred cCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceecCCcccccCCCCCcEEEEeCC
Q 012311 305 DREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPVYITVGD 379 (466)
Q Consensus 305 ~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv~G~ 379 (466)
-++...-.||+.|.|+++.... .+ .+..+|++++|+..++||-|.+..-... ..+-.|+-|+.+.+
T Consensus 154 l~k~~~~fivM~HYPP~s~~~t---~~-----~~sevlee~rv~~~lyGHlHgv~~p~~~-~s~v~Gi~y~Lvaa 219 (230)
T COG1768 154 LPKGVSKFIVMTHYPPFSDDGT---PG-----PFSEVLEEGRVSKCLYGHLHGVPRPNIG-FSNVRGIEYMLVAA 219 (230)
T ss_pred cccCcCeEEEEEecCCCCCCCC---Cc-----chHHHHhhcceeeEEeeeccCCCCCCCC-cccccCceEEEEec
Confidence 1234556799999999985432 12 4556888999999999998754321110 12334777766543
No 54
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.12 E-value=2.7e-05 Score=81.95 Aligned_cols=174 Identities=16% Similarity=0.216 Sum_probs=96.5
Q ss_pred HHHHHHHHh--CCCEEEEcccccccccccccccchhHH---HHHHHHHHHhhcCCeEEcCCCceeeccCcCC--c--cc-
Q 012311 176 STLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWD---SWGRFVERSAAYQPWIWSAGNHEIEYMTYMG--E--VV- 245 (466)
Q Consensus 176 ~tl~~~~~~--~~dfvl~~GDl~Y~~~~~~~d~~~~wd---~~~~~~~~l~~~~P~~~~~GNHE~~~~~~~~--~--~~- 245 (466)
.+|++|.++ ++|||++.||++--+.+.... +...+ ...+.+......+|++++.||||.-....+. . ..
T Consensus 199 s~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~-~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~ 277 (577)
T KOG3770|consen 199 SALDHIKENHKDIDYIIWTGDNVAHDVWAQTE-EENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRH 277 (577)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcccchhhhH-HHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchh
Confidence 346667766 599999999999655442111 11111 2233444556689999999999985321111 0 00
Q ss_pred ----cccccccccc--CCCCC-CCCCCCceEE-EeeCCEEEEEEcCCCCC----------CCChHHHHHHHHHHhhccCC
Q 012311 246 ----PFKSYLHRYP--TPHLA-SKSSSPLWYA-IRRASAHIIVLSSYSPF----------VKYTPQWEWLREELKKVDRE 307 (466)
Q Consensus 246 ----~f~~y~~rf~--~P~~~-~~~~~~~yYs-f~~g~v~fI~Lds~~~~----------~~~~~Q~~WL~~~L~~~~r~ 307 (466)
-+..+...|. .|... .....+-||. .-+++.++|+||+..-+ ..-.+|++||..+|.+++.
T Consensus 278 ~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~- 356 (577)
T KOG3770|consen 278 SQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAES- 356 (577)
T ss_pred hhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHh-
Confidence 0011111111 23221 1112345565 44588999999995311 1236789999999998753
Q ss_pred CCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcC--CcEEEecccc
Q 012311 308 KTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYK--VDYRISNLHY 356 (466)
Q Consensus 308 ~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~--Vd~~~~gh~~ 356 (466)
+..-+=+++|.|+-.. +.. +.--..+-.++.+|. |-.+++||.|
T Consensus 357 ~GekVhil~HIPpG~~---~c~--~~ws~~f~~iv~r~~~tI~gqf~GH~h 402 (577)
T KOG3770|consen 357 AGEKVHILGHIPPGDG---VCL--EGWSINFYRIVNRFRSTIAGQFYGHTH 402 (577)
T ss_pred cCCEEEEEEeeCCCCc---chh--hhhhHHHHHHHHHHHHhhhhhccccCc
Confidence 3344667789998431 111 111223444555552 3367888864
No 55
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.11 E-value=2e-05 Score=80.27 Aligned_cols=115 Identities=18% Similarity=0.224 Sum_probs=73.4
Q ss_pred CCCeEEEEEccCCCCCCc-----HHH---------HHH---HHHh--CCCEEEEcccccccccccccccchhHHHHHHHH
Q 012311 157 DASYKFGIIGDLGQTYNS-----LST---------LEH---YMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFV 217 (466)
Q Consensus 157 ~~~~~f~v~GD~g~~~~~-----~~t---------l~~---~~~~--~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~ 217 (466)
+..+|++.++|.|.-++. ... +.+ +.+. +||.++++||+..+..+.. +++|.+..+-+
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~---~eEf~~~~~Rf 122 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAG---DEEFKKRYERF 122 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCC---hHHHHHHHHHH
Confidence 468999999999875521 011 222 1222 9999999999996444332 45665543333
Q ss_pred HHHh---hcCCeEEcCCCceeeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCC
Q 012311 218 ERSA---AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYS 285 (466)
Q Consensus 218 ~~l~---~~~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~ 285 (466)
..+. .++|.+.++||||+++.... -.....||.-- .++...+|+.|+.-|+++|+..
T Consensus 123 kkIf~~k~~~~~~~i~GNhDIGf~~~~-----~~~~i~Rfe~~------fg~~~r~f~v~~~tf~~~d~~~ 182 (410)
T KOG3662|consen 123 KKIFGRKGNIKVIYIAGNHDIGFGNEL-----IPEWIDRFESV------FGPTERRFDVGNLTFVMFDSNA 182 (410)
T ss_pred HHhhCCCCCCeeEEeCCcccccccccc-----chhHHHHHHHh------hcchhhhhccCCceeEEeeehh
Confidence 3332 47999999999999854211 12233444311 1235678999999999999965
No 56
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.02 E-value=0.00016 Score=71.24 Aligned_cols=87 Identities=13% Similarity=0.102 Sum_probs=48.1
Q ss_pred CceEEEeeC-CEEEEEEcCCCC----C-------C----CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccc
Q 012311 266 PLWYAIRRA-SAHIIVLSSYSP----F-------V----KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFM 329 (466)
Q Consensus 266 ~~yYsf~~g-~v~fI~Lds~~~----~-------~----~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~ 329 (466)
..|.-++.+ ++++-++.-..+ + + ...+..++..++|++ .++.-+|+++|.+........ .
T Consensus 128 ~~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~~-~ 203 (277)
T cd07410 128 KPYVILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEES-L 203 (277)
T ss_pred CCEEEEEecCCCEEEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCcccc-c
Confidence 356677888 865555443211 0 0 112234555555554 467889999999876432100 1
Q ss_pred cCHHHHHHHHHHHHH-cCCcEEEecccceec
Q 012311 330 EGESMRAAFESWFVR-YKVDYRISNLHYNIS 359 (466)
Q Consensus 330 ~~~~~r~~l~~ll~~-y~Vd~~~~gh~~~~~ 359 (466)
..+.. ...|.++ -+||++++||.|...
T Consensus 204 ~~~~~---~~~la~~~~~vD~IlgGHsH~~~ 231 (277)
T cd07410 204 TGENA---AYELAEEVPGIDAILTGHQHRRF 231 (277)
T ss_pred CCccH---HHHHHhcCCCCcEEEeCCCcccc
Confidence 11111 1233344 599999999998653
No 57
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.00 E-value=2.7e-05 Score=73.47 Aligned_cols=196 Identities=13% Similarity=0.025 Sum_probs=95.7
Q ss_pred EEEccCCCCCCcHH---HHHHHHH----hCCCEEEEcccccccccccccccchhHHH-HHHHHHHHhhcCCeEEcCCCce
Q 012311 163 GIIGDLGQTYNSLS---TLEHYME----SGAQTVLFLGDLSYADRYQFIDVGVRWDS-WGRFVERSAAYQPWIWSAGNHE 234 (466)
Q Consensus 163 ~v~GD~g~~~~~~~---tl~~~~~----~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~-~~~~~~~l~~~~P~~~~~GNHE 234 (466)
++++|+|.+..... .+..+.+ .+++.++++||++..-............. +....+......+++.++||||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD 80 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHD 80 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCch
Confidence 36899998764322 2223222 38999999999995321111100111112 2344555566889999999999
Q ss_pred eeccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhcc------CCC
Q 012311 235 IEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVD------REK 308 (466)
Q Consensus 235 ~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~------r~~ 308 (466)
..... .+..+..... .......+.+++.+++++-... +......+.|+...+.... ..-
T Consensus 81 ~~~~~---------~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~HG~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (217)
T cd07398 81 FLLGD---------FFAEELGLIL-----LPDPLVHLELDGKRILLEHGDQ-FDTDDRAYQLLRRLGRNPYDQLLFLNRP 145 (217)
T ss_pred HHHHh---------HHHHHcCCEE-----eccceEEEeeCCeEEEEECCCc-CchhHHHHHHHHHHhCcHHHHHHHhcch
Confidence 75321 1111100000 0011215677888888887643 2233445555554322100 000
Q ss_pred CCeEEEEeccccccC----CCccc--ccCHHHHHHHHHHHHHcCCcEEEecccceecCCcccccCCCCCcEEEEeCC
Q 012311 309 TPWLIVLMHVPIYNS----NEAHF--MEGESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPVYITVGD 379 (466)
Q Consensus 309 ~~w~IV~~H~P~y~s----~~~h~--~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv~G~ 379 (466)
..|+.-........+ ..... .......+.+..++.+++++.+++||.|.-. .. ..++..|+..|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~--~~----~~~~~~~~n~G~ 216 (217)
T cd07398 146 LNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPA--LH----ELDGKLYINLGD 216 (217)
T ss_pred HHHHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCC--eE----EECCEEEEECCC
Confidence 000000001111100 00000 0112345566778899999999999987421 11 123678888775
No 58
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=97.96 E-value=0.00015 Score=70.78 Aligned_cols=173 Identities=14% Similarity=0.136 Sum_probs=84.6
Q ss_pred eEEEEEccCCCCC-------CcHHHHH----HHHHhCCC-EEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeE
Q 012311 160 YKFGIIGDLGQTY-------NSLSTLE----HYMESGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWI 227 (466)
Q Consensus 160 ~~f~v~GD~g~~~-------~~~~tl~----~~~~~~~d-fvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~ 227 (466)
+|++.+.|++.-. .....+. ++.+.+++ ++|.+||++...... + ..+.....+.++.+ . .-+
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~--~-~~~g~~~~~~l~~l--~-~d~ 74 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLS--T-ATKGKQMVPVLNAL--G-VDL 74 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccch--h-hcCCccHHHHHHhc--C-CcE
Confidence 4677777776211 1223333 33334677 899999998532211 1 00111222333322 1 236
Q ss_pred EcCCCceeeccCcCCcccccccccccccCCC---------C-CCCCCCCceEEEeeCCEE--EEEEcCCCCC--------
Q 012311 228 WSAGNHEIEYMTYMGEVVPFKSYLHRYPTPH---------L-ASKSSSPLWYAIRRASAH--IIVLSSYSPF-------- 287 (466)
Q Consensus 228 ~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~---------~-~~~~~~~~yYsf~~g~v~--fI~Lds~~~~-------- 287 (466)
.++||||++.... .+.........|. . ..-..-+.|.-++.++++ ||.+.+....
T Consensus 75 ~~~GNHefd~g~~-----~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~ 149 (257)
T cd07406 75 ACFGNHEFDFGED-----QLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPE 149 (257)
T ss_pred EeecccccccCHH-----HHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCC
Confidence 7899999965321 0111111111110 0 000112467888889855 5555443210
Q ss_pred C-CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHH-cCCcEEEeccccee
Q 012311 288 V-KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDYRISNLHYNI 358 (466)
Q Consensus 288 ~-~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~-y~Vd~~~~gh~~~~ 358 (466)
+ ....-.+.+++.+++..+.+..-+|++.|.+... ... +.++ .+||++++||.|..
T Consensus 150 ~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~--------d~~-------la~~~~~iD~IlgGH~H~~ 207 (257)
T cd07406 150 YVRYRDYVETARELVDELREQGADLIIALTHMRLPN--------DKR-------LAREVPEIDLILGGHDHEY 207 (257)
T ss_pred cceEcCHHHHHHHHHHHHHhCCCCEEEEEeccCchh--------hHH-------HHHhCCCCceEEeccccee
Confidence 0 0112233344444333235788899999987521 111 2222 48999999998854
No 59
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=97.90 E-value=0.00021 Score=70.90 Aligned_cols=92 Identities=11% Similarity=0.021 Sum_probs=47.6
Q ss_pred ceEEEeeCCEE--EEEEcCCC-CC--------C-CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHH
Q 012311 267 LWYAIRRASAH--IIVLSSYS-PF--------V-KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESM 334 (466)
Q Consensus 267 ~yYsf~~g~v~--fI~Lds~~-~~--------~-~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~ 334 (466)
.|.-++.++++ ||.|-+.. .. + ....-.+-+++.+++....+..-+|++.|......... . ..+..
T Consensus 138 py~i~~~~G~kIgviGl~~~~~~~~~~~~~~~g~~f~d~~e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~-~-~~~~~ 215 (288)
T cd07412 138 PYTIKDVGGVKVGFIGAVTKDTPNLVSPDGVAGLEFTDEVEAINAVAPELKAGGVDAIVVLAHEGGSTKGGD-D-TCSAA 215 (288)
T ss_pred CEEEEEECCEEEEEEeecCCCccceeccccccCceEcCHHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCC-c-ccccc
Confidence 45667888854 55553321 00 1 01222334555444443256888999999876542211 0 00111
Q ss_pred HHHHHHHHHH--cCCcEEEecccceecC
Q 012311 335 RAAFESWFVR--YKVDYRISNLHYNISS 360 (466)
Q Consensus 335 r~~l~~ll~~--y~Vd~~~~gh~~~~~~ 360 (466)
......++.+ -+||++++||.|....
T Consensus 216 ~~~~~~l~~~~~~~iD~IlgGHsH~~~~ 243 (288)
T cd07412 216 SGPIADIVNRLDPDVDVVFAGHTHQAYN 243 (288)
T ss_pred ChhHHHHHhhcCCCCCEEEeCccCcccc
Confidence 1122233444 4899999999986543
No 60
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.85 E-value=0.00088 Score=65.13 Aligned_cols=190 Identities=14% Similarity=0.132 Sum_probs=98.8
Q ss_pred EEEEEccCCCCCCc---HHHHHHHHHh-CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceee
Q 012311 161 KFGIIGDLGQTYNS---LSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 161 ~f~v~GD~g~~~~~---~~tl~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
|++++||.=....- ...+.++.+. ++||++..||++-..... . ....+.+..+ .+- ..+.||||++
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl----~---~~~~~~L~~~--G~D-~iTlGNH~fD 70 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGI----T---PKIAKELLSA--GVD-VITMGNHTWD 70 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCC----C---HHHHHHHHhc--CCC-EEEecccccC
Confidence 57889997433321 2234445444 799999999998643111 1 1112222222 333 4566999997
Q ss_pred ccCcCCcccccccccccc---cCCCCCC-CCCCCceEEEeeCCEEEEEEcCCCCCC--CChHHHHHHHHHHhhccCCCCC
Q 012311 237 YMTYMGEVVPFKSYLHRY---PTPHLAS-KSSSPLWYAIRRASAHIIVLSSYSPFV--KYTPQWEWLREELKKVDREKTP 310 (466)
Q Consensus 237 ~~~~~~~~~~f~~y~~rf---~~P~~~~-~~~~~~yYsf~~g~v~fI~Lds~~~~~--~~~~Q~~WL~~~L~~~~r~~~~ 310 (466)
.. +. ..+.... -.|.|-+ ......|.-++.+++.+-+++-..... ....=.+-+++.+++... ++.
T Consensus 71 ~g----el---~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk~-~~D 142 (255)
T cd07382 71 KK----EI---LDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLEELKE-EAD 142 (255)
T ss_pred cc----hH---HHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHhc-CCC
Confidence 53 11 1111111 0111110 112345777888886665555421111 111113335555555432 678
Q ss_pred eEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceecCCcccccCCCCCcEEEE-eCCCCCC
Q 012311 311 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPVYIT-VGDGGNQ 383 (466)
Q Consensus 311 w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv-~G~gG~~ 383 (466)
-+||.+|.-.- ..+.+|.. ...-+||.++.+|.|-...+.. .-++|+.||+ +|.-|..
T Consensus 143 ~IIV~~H~g~t-----------sEk~ala~-~ldg~VdvIvGtHTHv~t~d~~---il~~gTa~itd~Gm~G~~ 201 (255)
T cd07382 143 IIFVDFHAEAT-----------SEKIALGW-YLDGRVSAVVGTHTHVQTADER---ILPGGTAYITDVGMTGPY 201 (255)
T ss_pred EEEEEECCCCC-----------HHHHHHHH-hCCCCceEEEeCCCCccCCccE---EeeCCeEEEecCccccCC
Confidence 89999997321 11223332 2233699999999986544331 1357898987 4445544
No 61
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=97.84 E-value=0.0003 Score=68.85 Aligned_cols=155 Identities=14% Similarity=0.033 Sum_probs=76.4
Q ss_pred HHHHHHh-CCCEE-EEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceeeccCcCCccccccccccccc
Q 012311 178 LEHYMES-GAQTV-LFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYP 255 (466)
Q Consensus 178 l~~~~~~-~~dfv-l~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~ 255 (466)
++++.+. .++.+ +.+||+....... . ........+. +..+++.++.||||++.... .+......+.
T Consensus 42 v~~~~~~~~~~~l~l~~GD~~~gs~~~--~-~~~g~~~~~~----l~~~g~da~~GNHefd~g~~-----~l~~~~~~~~ 109 (264)
T cd07411 42 IKRIRAERNPNTLLLDGGDTWQGSGEA--L-YTRGQAMVDA----LNALGVDAMVGHWEFTYGPE-----RVRELFGRLN 109 (264)
T ss_pred HHHHHHhcCCCeEEEeCCCccCCChHH--h-hcCChhHHHH----HHhhCCeEEecccccccCHH-----HHHHHHhhCC
Confidence 3444445 78876 6799999543211 0 1111222222 23356555559999875321 1111111111
Q ss_pred CCCC-------CC-CCCCCceEEEeeCC--EEEEEEcCCCCCC----------CChHHHHHHHHHHhhcc-CCCCCeEEE
Q 012311 256 TPHL-------AS-KSSSPLWYAIRRAS--AHIIVLSSYSPFV----------KYTPQWEWLREELKKVD-REKTPWLIV 314 (466)
Q Consensus 256 ~P~~-------~~-~~~~~~yYsf~~g~--v~fI~Lds~~~~~----------~~~~Q~~WL~~~L~~~~-r~~~~w~IV 314 (466)
.|.- +. ......|.-++.++ +-||.+.+..... ......+.+++.+++.. ..+..-+|+
T Consensus 110 ~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iI~ 189 (264)
T cd07411 110 WPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQEVVVKLRREEGVDVVVL 189 (264)
T ss_pred CCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 1110 00 00112466678887 4556665431100 01234455555543322 246788999
Q ss_pred EeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEeccccee
Q 012311 315 LMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNI 358 (466)
Q Consensus 315 ~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~ 358 (466)
+.|.+... ...+.+.+ .+||++++||.|..
T Consensus 190 l~H~g~~~--------~~~la~~~------~~iDlilgGH~H~~ 219 (264)
T cd07411 190 LSHNGLPV--------DVELAERV------PGIDVILSGHTHER 219 (264)
T ss_pred EecCCchh--------hHHHHhcC------CCCcEEEeCccccc
Confidence 99987531 11122111 58999999999854
No 62
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.81 E-value=5.4e-05 Score=73.68 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=48.0
Q ss_pred eEEEEEccCCCCCCc---------HHHHHHH----HHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhh-c-C
Q 012311 160 YKFGIIGDLGQTYNS---------LSTLEHY----MESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-Y-Q 224 (466)
Q Consensus 160 ~~f~v~GD~g~~~~~---------~~tl~~~----~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~-~-~ 224 (466)
+||+.++|+|.+... ...++.+ .+.++|+|+++||++...... ......+.++++.+.. . +
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~----~~~~~~~~~~l~~l~~~~~i 76 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPP----AEAQELFNAFFRNLSDANPI 76 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCC----HHHHHHHHHHHHHHHhcCCc
Confidence 489999999976421 1233333 344899999999999533221 1223345556666543 3 8
Q ss_pred CeEEcCCCceee
Q 012311 225 PWIWSAGNHEIE 236 (466)
Q Consensus 225 P~~~~~GNHE~~ 236 (466)
|+++++||||..
T Consensus 77 ~v~~i~GNHD~~ 88 (253)
T TIGR00619 77 PIVVISGNHDSA 88 (253)
T ss_pred eEEEEccCCCCh
Confidence 999999999974
No 63
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=97.72 E-value=4.5e-05 Score=78.97 Aligned_cols=73 Identities=25% Similarity=0.133 Sum_probs=49.4
Q ss_pred eEEEEEccCCCCC---Cc-------H----HHHHHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHh-hcC
Q 012311 160 YKFGIIGDLGQTY---NS-------L----STLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AYQ 224 (466)
Q Consensus 160 ~~f~v~GD~g~~~---~~-------~----~tl~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~-~~~ 224 (466)
+||+.++|+|.+. +. . ..++.+.++++||||++||+......+ ...-..+.+.++.+. ..+
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps----~~a~~~~~~~l~~l~~~~I 76 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPS----PRALKLFLEALRRLKDAGI 76 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCC----HHHHHHHHHHHHHhccCCC
Confidence 4899999999882 11 1 223344556999999999999653322 122234455555553 479
Q ss_pred CeEEcCCCceee
Q 012311 225 PWIWSAGNHEIE 236 (466)
Q Consensus 225 P~~~~~GNHE~~ 236 (466)
|++++.||||..
T Consensus 77 pv~~I~GNHD~~ 88 (390)
T COG0420 77 PVVVIAGNHDSP 88 (390)
T ss_pred cEEEecCCCCch
Confidence 999999999975
No 64
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=97.72 E-value=0.00041 Score=67.68 Aligned_cols=178 Identities=12% Similarity=0.048 Sum_probs=85.2
Q ss_pred eEEEEEccCCCCC-------CcHHHHHHH----HHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEE
Q 012311 160 YKFGIIGDLGQTY-------NSLSTLEHY----MESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIW 228 (466)
Q Consensus 160 ~~f~v~GD~g~~~-------~~~~tl~~~----~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~ 228 (466)
+|++.++|+|... .....++.+ .+.+.++++.+||++..... .. ........+.+..+ ...+ .
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~--~~-~~~g~~~~~~ln~~--g~d~-~ 74 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPI--SD-LDKGETIIKIMNAV--GYDA-V 74 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchh--hh-hcCCcHHHHHHHhc--CCcE-E
Confidence 4788899998642 123333333 22256899999999853211 00 00111112222221 3344 5
Q ss_pred cCCCceeeccCcCCcccccccccccccCCCC-------CCC-CCCCceEEEeeC-C--EEEEEEcCCC-C-----C---C
Q 012311 229 SAGNHEIEYMTYMGEVVPFKSYLHRYPTPHL-------ASK-SSSPLWYAIRRA-S--AHIIVLSSYS-P-----F---V 288 (466)
Q Consensus 229 ~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~-------~~~-~~~~~yYsf~~g-~--v~fI~Lds~~-~-----~---~ 288 (466)
++||||+++... .+..+...+..|.- ..+ ..-..|--++.+ + +-||.+-+.. . . +
T Consensus 75 ~~GNHefd~G~~-----~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~ 149 (257)
T cd07408 75 TPGNHEFDYGLD-----RLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVKD 149 (257)
T ss_pred ccccccccCCHH-----HHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccCC
Confidence 789999875321 11112222222211 000 011235556777 6 5566665431 0 0 0
Q ss_pred C-----ChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceec
Q 012311 289 K-----YTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNIS 359 (466)
Q Consensus 289 ~-----~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~ 359 (466)
. ...-.+|+...|++ .++.-+|++.|.+...... +.. ...+.. .-.+||+++.||.|...
T Consensus 150 ~~~~d~~~~~~~~~v~~l~~---~~~D~iIvl~H~G~~~~~~----~~~--~~~la~--~~~giDvIigGH~H~~~ 214 (257)
T cd07408 150 VTFEDPIEEAKKVIVAALKA---KGADVIVALGHLGVDRTSS----PWT--STELAA--NVTGIDLIIDGHSHTTI 214 (257)
T ss_pred cEEecHHHHHHHHHHHHHHh---CCCCEEEEEeCcCcCCCCC----Ccc--HHHHHH--hCCCceEEEeCCCcccc
Confidence 0 11112332333333 5688899999988754321 111 112222 12489999999998654
No 65
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=97.64 E-value=0.0061 Score=59.56 Aligned_cols=197 Identities=16% Similarity=0.079 Sum_probs=103.4
Q ss_pred eEEEEEccCCCCCCc---HHHHHHHHHh-CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCcee
Q 012311 160 YKFGIIGDLGQTYNS---LSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 235 (466)
Q Consensus 160 ~~f~v~GD~g~~~~~---~~tl~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~ 235 (466)
.|++++||.=....- ...|..+.+. ++||++..||++-.. ... . ....+.+. ...+-++ +.|||++
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG-~Gi---~---~~~~~~L~--~~GvDvi-T~GNH~~ 70 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHG-KGL---T---LKIYEFLK--QSGVNYI-TMGNHTW 70 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCC-CCC---C---HHHHHHHH--hcCCCEE-Eccchhc
Confidence 378999998432211 1234445444 899999999999532 111 1 11122222 1245554 4599999
Q ss_pred eccCcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcCCC-CCC-C--ChHHHHHHHHHHhhccCCCCCe
Q 012311 236 EYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYS-PFV-K--YTPQWEWLREELKKVDREKTPW 311 (466)
Q Consensus 236 ~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~-~~~-~--~~~Q~~WL~~~L~~~~r~~~~w 311 (466)
+..................+.|. ...+..|..++.++..+-+++-.. .+. . ...=.+-+++.+++.. .+++.
T Consensus 71 Dkge~~~~i~~~~~~lrpanyp~---~~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d~~i~~lk-~~~d~ 146 (266)
T TIGR00282 71 FQKLILDVVINQKDLVRPLNFDT---SFAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFKVLKELINMLK-KDCDL 146 (266)
T ss_pred cCcHHHHHHhccccccccCCCCC---CCCCCCcEEEEECCEEEEEEECCCcccCCccccCCHHHHHHHHHHhhh-cCCCE
Confidence 75310000000000111112222 122334667788887766665421 111 1 0111122333444332 24778
Q ss_pred EEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceecCCcccccCCCCCcEEEE-eCCCCCCCC
Q 012311 312 LIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPVYIT-VGDGGNQEG 385 (466)
Q Consensus 312 ~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv-~G~gG~~~~ 385 (466)
+||.+|.-. +.. +....++.+-+||.++.-|.|=...+.. .-++|+.||+ +|.-|...+
T Consensus 147 IIVd~Haea-----------tsE-K~a~~~~ldg~vsaVvGtHtHV~TaD~~---il~~gtayitD~Gm~G~~~s 206 (266)
T TIGR00282 147 IFVDFHAET-----------TSE-KNAFGMAFDGYVTAVVGTHTHVPTADLR---ILPKGTAYITDVGMTGPFGS 206 (266)
T ss_pred EEEEeCCCC-----------HHH-HHHHHHHhCCCccEEEeCCCCCCCCcce---eCCCCCEEEecCCcccCccc
Confidence 999999532 122 3446688889999999999874443322 2367999998 566666543
No 66
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.54 E-value=0.00024 Score=73.90 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=45.8
Q ss_pred eEEEEEccCCCCCC----c-----HHHHHH----HHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhh-cCC
Q 012311 160 YKFGIIGDLGQTYN----S-----LSTLEH----YMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQP 225 (466)
Q Consensus 160 ~~f~v~GD~g~~~~----~-----~~tl~~----~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~-~~P 225 (466)
+||+.++|+|.+.. . ...++. +.+.+||+||++||+....... ......+.+++..+.. .+|
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~----~~a~~~~~~~l~~L~~~~~~ 76 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPP----SYARELYNRFVVNLQQTGCQ 76 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCc----HHHHHHHHHHHHHHHhcCCc
Confidence 48999999998632 1 011232 3345999999999998432211 1112233445444433 589
Q ss_pred eEEcCCCceee
Q 012311 226 WIWSAGNHEIE 236 (466)
Q Consensus 226 ~~~~~GNHE~~ 236 (466)
+++++||||..
T Consensus 77 v~~I~GNHD~~ 87 (407)
T PRK10966 77 LVVLAGNHDSV 87 (407)
T ss_pred EEEEcCCCCCh
Confidence 99999999974
No 67
>PRK09453 phosphodiesterase; Provisional
Probab=97.49 E-value=0.00026 Score=65.26 Aligned_cols=75 Identities=21% Similarity=0.241 Sum_probs=43.5
Q ss_pred eEEEEEccCCCCCCcHHH-HHHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceee
Q 012311 160 YKFGIIGDLGQTYNSLST-LEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 160 ~~f~v~GD~g~~~~~~~t-l~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
.|+++++|+|......+. ++.+.+.++|.++++||++..............++..+.++.+ ..|++++.||||..
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~--~~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY--ADKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhc--CCceEEEccCCcch
Confidence 379999999965433222 3334445899999999998532110000000122233333322 35899999999964
No 68
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.47 E-value=0.00034 Score=71.09 Aligned_cols=74 Identities=19% Similarity=0.110 Sum_probs=45.8
Q ss_pred eEEEEEccCCCCCCc---------HHHHHHH----HHhCCCEEEEcccccccccccccccchhHHHHHH-HHHHHh-hcC
Q 012311 160 YKFGIIGDLGQTYNS---------LSTLEHY----MESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGR-FVERSA-AYQ 224 (466)
Q Consensus 160 ~~f~v~GD~g~~~~~---------~~tl~~~----~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~-~~~~l~-~~~ 224 (466)
+||+.++|+|.+... ...++++ .++++|+||++||+.-...... ........+ +++.+. ..+
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~---~~~~~~~~~~l~~~L~~~gi 77 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAIT---QNTMNFVREKIFDLLKEAGI 77 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCC---HHHHHHHHHHHHHHHHHCCC
Confidence 489999999986421 1234433 3459999999999984321111 112222222 233443 369
Q ss_pred CeEEcCCCceee
Q 012311 225 PWIWSAGNHEIE 236 (466)
Q Consensus 225 P~~~~~GNHE~~ 236 (466)
|++.++||||..
T Consensus 78 ~v~~I~GNHD~~ 89 (340)
T PHA02546 78 TLHVLVGNHDMY 89 (340)
T ss_pred eEEEEccCCCcc
Confidence 999999999974
No 69
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.44 E-value=0.0023 Score=75.30 Aligned_cols=190 Identities=15% Similarity=0.072 Sum_probs=92.9
Q ss_pred CCCeEEEEEccCCCCCCcHHH----HHHHHHhCCCEEEE-cccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCC
Q 012311 157 DASYKFGIIGDLGQTYNSLST----LEHYMESGAQTVLF-LGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAG 231 (466)
Q Consensus 157 ~~~~~f~v~GD~g~~~~~~~t----l~~~~~~~~dfvl~-~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~G 231 (466)
...++++.++|+|........ ++++.+.+++.++. +||++...... . ...+....+.+.. --.-+.++|
T Consensus 658 ~~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~--~-~~~g~~~~~~ln~---lg~d~~~~G 731 (1163)
T PRK09419 658 NWELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYS--N-LLKGLPVLKMMKE---MGYDASTFG 731 (1163)
T ss_pred ceEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchh--h-hcCChHHHHHHhC---cCCCEEEec
Confidence 357999999999965433333 34444457887755 99998532111 0 0111222222222 123366999
Q ss_pred CceeeccCcC-----Cccc-----------ccccccc-cccCCCCCCCCCCCceEEEeeCCE--EEEEEcCCC-C-----
Q 012311 232 NHEIEYMTYM-----GEVV-----------PFKSYLH-RYPTPHLASKSSSPLWYAIRRASA--HIIVLSSYS-P----- 286 (466)
Q Consensus 232 NHE~~~~~~~-----~~~~-----------~f~~y~~-rf~~P~~~~~~~~~~yYsf~~g~v--~fI~Lds~~-~----- 286 (466)
|||++..... .... +|.-..+ .+.............|.-++.+++ -||.|-+.. .
T Consensus 732 NHEfd~g~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p 811 (1163)
T PRK09419 732 NHEFDWGPDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSP 811 (1163)
T ss_pred ccccccChHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCC
Confidence 9999754210 0000 0100000 000000000011234666788874 456654421 0
Q ss_pred C---C-CChHHHHHHHHHHhhcc-CCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHc-CCcEEEecccceec
Q 012311 287 F---V-KYTPQWEWLREELKKVD-REKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVDYRISNLHYNIS 359 (466)
Q Consensus 287 ~---~-~~~~Q~~WL~~~L~~~~-r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y-~Vd~~~~gh~~~~~ 359 (466)
. + ......+.+++..++.. ..+..-+|++.|......... .+++ ...|.++. +||+++.||.|...
T Consensus 812 ~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~--~~~~-----~~~lA~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 812 GNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTT--GEIT-----GLELAKKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred CCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccc--cccH-----HHHHHHhCCCCCEEEeCCCCccc
Confidence 0 0 01222334444444432 246888999999987532111 1121 12333333 89999999998654
No 70
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.0032 Score=67.68 Aligned_cols=189 Identities=15% Similarity=0.105 Sum_probs=100.2
Q ss_pred CCCCCCCeEEEEEccCCCCCC------------cHHH----HHHHHHh-CCCEEEEcccccccccccccccchhHHHHHH
Q 012311 153 KIDPDASYKFGIIGDLGQTYN------------SLST----LEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGR 215 (466)
Q Consensus 153 ~~g~~~~~~f~v~GD~g~~~~------------~~~t----l~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~ 215 (466)
+.....+++|+...|+|..-. .... ++++.+. +..++|.+||++...... ++...+..-.+
T Consensus 20 ~~~~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~--~~~~~g~~~~~ 97 (517)
T COG0737 20 AAAETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLS--DYLTKGEPTVD 97 (517)
T ss_pred cccCceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCcccc--ccccCCChHHH
Confidence 333456899999999986533 2222 2333333 456789999999643322 11111111222
Q ss_pred HHHHHhhcCCe-EEcCCCceeeccCcCCcccccccccccccCCC---C-----C-CCCCCCceEEEeeCCE--EEEEEcC
Q 012311 216 FVERSAAYQPW-IWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPH---L-----A-SKSSSPLWYAIRRASA--HIIVLSS 283 (466)
Q Consensus 216 ~~~~l~~~~P~-~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~---~-----~-~~~~~~~yYsf~~g~v--~fI~Lds 283 (466)
.|. .+++ ..++||||+++..+ .+..+......|. | . ......-|.-++.+++ -+|.+.+
T Consensus 98 ~mN----~m~yDa~tiGNHEFd~g~~-----~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~ 168 (517)
T COG0737 98 LLN----ALGYDAMTLGNHEFDYGLE-----ALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTT 168 (517)
T ss_pred HHh----hcCCcEEeecccccccCHH-----HHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecC
Confidence 332 3333 68999999986421 0111111111120 0 0 0112356788888874 5566654
Q ss_pred CC--CC---C-----CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEec
Q 012311 284 YS--PF---V-----KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISN 353 (466)
Q Consensus 284 ~~--~~---~-----~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~g 353 (466)
-. .+ + ......+++++.+.+.......-+|++.|.+....... ....+....... .++|..+.|
T Consensus 169 ~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~-~~~~~~~~~~~~-----~~iD~i~~G 242 (517)
T COG0737 169 PTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLEL-ASEVPGDVDVAV-----PGIDLIIGG 242 (517)
T ss_pred CcccccccccccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccc-cccccccccccc-----cCcceEecc
Confidence 11 11 1 12345667777777664444788999999998754331 111111111111 459999999
Q ss_pred cccee
Q 012311 354 LHYNI 358 (466)
Q Consensus 354 h~~~~ 358 (466)
|.|..
T Consensus 243 H~H~~ 247 (517)
T COG0737 243 HSHTV 247 (517)
T ss_pred CCccc
Confidence 99864
No 71
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=97.34 E-value=0.012 Score=58.10 Aligned_cols=183 Identities=13% Similarity=0.138 Sum_probs=90.9
Q ss_pred CCeEEEEEccCCCCCC----------c----HHHHHHHHH----hCCC-EEEEcccccccccccccccchhHHHHHHHHH
Q 012311 158 ASYKFGIIGDLGQTYN----------S----LSTLEHYME----SGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVE 218 (466)
Q Consensus 158 ~~~~f~v~GD~g~~~~----------~----~~tl~~~~~----~~~d-fvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~ 218 (466)
.+++|+..+|+|.... . ...++++.+ .+++ ++|..||.+......... ...+. .+-
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~-~~~g~----~~~ 78 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDAS-PPPGS----YSN 78 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeee-cCCCh----HHH
Confidence 4789999999986421 1 111233322 2455 678899999643221100 11222 233
Q ss_pred HHhhcCCe-EEcCCCceeeccCcCCcccccccccccccCCC--------CCCC---CCCCceEEEeeC-CEE--EEEEcC
Q 012311 219 RSAAYQPW-IWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPH--------LASK---SSSPLWYAIRRA-SAH--IIVLSS 283 (466)
Q Consensus 219 ~l~~~~P~-~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~--------~~~~---~~~~~yYsf~~g-~v~--fI~Lds 283 (466)
.++..+++ .+++||||++..+. + ...+..+......|. .+++ .....|.-++.+ +++ ||.|-+
T Consensus 79 ~~mN~mgyDa~tlGNHEFd~g~~-~-l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGltt 156 (282)
T cd07407 79 PIFRMMPYDLLTIGNHELYNYEV-A-DDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFLF 156 (282)
T ss_pred HHHHhcCCcEEeecccccCcccc-H-HHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEec
Confidence 33444555 68999999964211 0 000000111011111 0000 012346666776 654 555543
Q ss_pred CCC--C-C----C--ChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHc-CCc-EEEe
Q 012311 284 YSP--F-V----K--YTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVD-YRIS 352 (466)
Q Consensus 284 ~~~--~-~----~--~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y-~Vd-~~~~ 352 (466)
... . + . ...|.+|+.+.|++ .+..-+||+.|...-... + ..+..+.+.++. ++| ..+.
T Consensus 157 ~~~~~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d~-----~---~~~~~~~la~~~~~id~~Ii~ 225 (282)
T cd07407 157 DFKGAANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDDA-----E---FKVLHDAIRKIFPDTPIQFLG 225 (282)
T ss_pred ccccCCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCc-----c---HHHHHHHHHHhCCCCCEEEEe
Confidence 211 1 1 1 12344588888875 467889999998764321 1 111112233344 678 6999
Q ss_pred ccccee
Q 012311 353 NLHYNI 358 (466)
Q Consensus 353 gh~~~~ 358 (466)
||.|..
T Consensus 226 GHsH~~ 231 (282)
T cd07407 226 GHSHVR 231 (282)
T ss_pred CCcccc
Confidence 999854
No 72
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.30 E-value=0.00035 Score=63.81 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=32.1
Q ss_pred hCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceee
Q 012311 184 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 184 ~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
.+||.++++||++....... ...+.... ........+|+++++||||..
T Consensus 40 ~~~d~lii~GDl~~~~~~~~---~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 40 YGPERLIILGDLKHSFGGLS---RQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred cCCCEEEEeCcccccccccC---HHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 49999999999996433211 11222221 333344678999999999975
No 73
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=97.20 E-value=0.0043 Score=61.35 Aligned_cols=80 Identities=14% Similarity=0.044 Sum_probs=46.2
Q ss_pred CceEEEeeCCEE--EEEEcCCCC-------CC-CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHH
Q 012311 266 PLWYAIRRASAH--IIVLSSYSP-------FV-KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMR 335 (466)
Q Consensus 266 ~~yYsf~~g~v~--fI~Lds~~~-------~~-~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r 335 (466)
..|.-++.++++ ||.+-+... .+ ...+-.+.+++.+++....+..-+|++.|...-. . +
T Consensus 130 ~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~~--------d---~ 198 (281)
T cd07409 130 KPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNKIIALSHSGYEV--------D---K 198 (281)
T ss_pred CCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCEEEEEeccCchh--------H---H
Confidence 346667888854 555544211 01 1123345566666665434688899999976421 0 1
Q ss_pred HHHHHHHHHcCCcEEEecccceec
Q 012311 336 AAFESWFVRYKVDYRISNLHYNIS 359 (466)
Q Consensus 336 ~~l~~ll~~y~Vd~~~~gh~~~~~ 359 (466)
.+..-+ -+||++++||.|...
T Consensus 199 -~la~~~--~giD~IiggH~H~~~ 219 (281)
T cd07409 199 -EIARKV--PGVDVIVGGHSHTFL 219 (281)
T ss_pred -HHHHcC--CCCcEEEeCCcCccc
Confidence 222222 589999999998654
No 74
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.07 E-value=0.0059 Score=60.51 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=30.0
Q ss_pred CCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceec
Q 012311 307 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNIS 359 (466)
Q Consensus 307 ~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~ 359 (466)
.+..-+|++.|........ +. ........+...+...+||+++.||.|...
T Consensus 172 ~~~D~VI~lsH~G~~~~~~-~~-~~~~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 172 EKPDIVIAATHMGHYDNGE-HG-SNAPGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred cCCCEEEEEecccccCCcc-cc-ccCchHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 4678899999998754221 11 110111222233323599999999998654
No 75
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.90 E-value=0.0022 Score=61.24 Aligned_cols=69 Identities=23% Similarity=0.436 Sum_probs=45.7
Q ss_pred eEEEEEccCCCCCCc--------------HHHHHHHHH----hCCCEEEEcccccccccccccccchhHHHHHHHHHHHh
Q 012311 160 YKFGIIGDLGQTYNS--------------LSTLEHYME----SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA 221 (466)
Q Consensus 160 ~~f~v~GD~g~~~~~--------------~~tl~~~~~----~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~ 221 (466)
-+.++++|+|.+... ..+++++.+ .+||.++++||+...... ...|..+.++++.+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~-----~~~~~~~~~~l~~~- 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKK-----GLEWRFIREFIEVT- 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCC-----hHHHHHHHHHHHhc-
Confidence 468899999987521 133444432 389999999999964332 13344444555543
Q ss_pred hcCCeEEcCCCcee
Q 012311 222 AYQPWIWSAGNHEI 235 (466)
Q Consensus 222 ~~~P~~~~~GNHE~ 235 (466)
..++++++||||.
T Consensus 89 -~~~v~~V~GNHD~ 101 (225)
T TIGR00024 89 -FRDLILIRGNHDA 101 (225)
T ss_pred -CCcEEEECCCCCC
Confidence 3599999999995
No 76
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=96.81 E-value=0.018 Score=62.44 Aligned_cols=189 Identities=13% Similarity=0.068 Sum_probs=87.5
Q ss_pred CCCeEEEEEccCCCCCC-------cHHHH----HHHHHh----CC-CEEEEcccccccccccccccchhHHHHHHHHHHH
Q 012311 157 DASYKFGIIGDLGQTYN-------SLSTL----EHYMES----GA-QTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS 220 (466)
Q Consensus 157 ~~~~~f~v~GD~g~~~~-------~~~tl----~~~~~~----~~-dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l 220 (466)
...++|+.++|+|.... ....+ +++.+. ++ -++|.+||..... ... .+.. .+.+-.+
T Consensus 32 ~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs--~~s----~~~~-g~~~i~~ 104 (551)
T PRK09558 32 TYKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGV--PES----DLQD-AEPDFRG 104 (551)
T ss_pred ceEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccce--Ehh----hhcC-CchhHHH
Confidence 45899999999987532 22222 233221 23 4688999998532 111 1100 0111122
Q ss_pred hhcCC-eEEcCCCceeeccCcC-C---cccccccccccccCCCCCCCCCCCceEEEeeCCEE--EEEEcCCCC--C----
Q 012311 221 AAYQP-WIWSAGNHEIEYMTYM-G---EVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAH--IIVLSSYSP--F---- 287 (466)
Q Consensus 221 ~~~~P-~~~~~GNHE~~~~~~~-~---~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~--fI~Lds~~~--~---- 287 (466)
+..+. =..++||||+++.... . ....|.-..+-......+. ..-..|.-++.++++ ||.+-+... +
T Consensus 105 mN~~g~Da~tlGNHEFD~G~~~L~~~~~~a~fp~l~aNv~~~~~g~-~~~~py~i~~~~G~kIgiiG~~t~~~~~~~~~~ 183 (551)
T PRK09558 105 MNLIGYDAMAVGNHEFDNPLSVLRKQEKWAKFPFLSANIYQKSTGE-RLFKPYAIFDRQGLKIAVIGLTTEDTAKIGNPE 183 (551)
T ss_pred HhcCCCCEEcccccccCcCHHHHHHhhccCCCCEEEEEEEECCCCC-cccCCeEEEEECCEEEEEEEEeccccccccCCC
Confidence 22222 2567899999864210 0 0001110001000010010 112346667888855 555543211 0
Q ss_pred ---C-CChHHHHHHHHHHhhccC-CCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHc---CCcEEEeccccee
Q 012311 288 ---V-KYTPQWEWLREELKKVDR-EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY---KVDYRISNLHYNI 358 (466)
Q Consensus 288 ---~-~~~~Q~~WL~~~L~~~~r-~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y---~Vd~~~~gh~~~~ 358 (466)
+ ......+-+++..++... .+..-+|++.|......... ....... ..|.++. +||+++.||.|..
T Consensus 184 ~~~~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~-~~~~~~d----~~la~~~~~~~IDvIlgGHsH~~ 257 (551)
T PRK09558 184 YFTDIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEH-GSNAPGD----VEMARSLPAGGLDMIVGGHSQDP 257 (551)
T ss_pred CcCCceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCcc-CCCCccH----HHHHHhCCccCceEEEeCCCCcc
Confidence 0 011122223333333321 46888999999887542211 0000101 2233433 8999999999864
No 77
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=96.78 E-value=0.0069 Score=47.40 Aligned_cols=70 Identities=20% Similarity=0.386 Sum_probs=46.0
Q ss_pred CCceEEEeeecCCCCcEEEEEEcCCCCC----CcEEEEeecCCCCceEEEeEEEEeeeeccccceEEEEEecCCCCCCEE
Q 012311 58 SPQQVHITQGDYDGKAVIISWVTPHEPG----PSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKY 133 (466)
Q Consensus 58 ~P~qv~lt~~~~~~~~~~V~W~t~~~~~----~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~~~~h~v~l~gL~P~T~Y 133 (466)
+|+.+++.... .+++.|+|..+.... .-.|+|....+... ..... ...-.+.++|+||+|+|+|
T Consensus 2 ~P~~l~v~~~~--~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~------~~~~~----~~~~~~~~~i~~L~p~t~Y 69 (85)
T PF00041_consen 2 APENLSVSNIS--PTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSD------WQEVT----VPGNETSYTITGLQPGTTY 69 (85)
T ss_dssp SSEEEEEEEEC--SSEEEEEEEESSSTSSSESEEEEEEEETTSSSE------EEEEE----EETTSSEEEEESCCTTSEE
T ss_pred cCcCeEEEECC--CCEEEEEEECCCCCCCCeeEEEEEEEeccccee------eeeee----eeeeeeeeeeccCCCCCEE
Confidence 48888888753 589999999984221 24677766654330 11111 1112237889999999999
Q ss_pred EEEecc
Q 012311 134 YYKIGS 139 (466)
Q Consensus 134 ~Yrv~~ 139 (466)
.+||..
T Consensus 70 ~~~v~a 75 (85)
T PF00041_consen 70 EFRVRA 75 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999975
No 78
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.0047 Score=58.59 Aligned_cols=185 Identities=18% Similarity=0.194 Sum_probs=92.5
Q ss_pred EEccCCCCCCcHH---HHHHHHHh---CCCEEEEcccccccccccccccchhHHHHHH----HHHHHh-hcCCeEEcCCC
Q 012311 164 IIGDLGQTYNSLS---TLEHYMES---GAQTVLFLGDLSYADRYQFIDVGVRWDSWGR----FVERSA-AYQPWIWSAGN 232 (466)
Q Consensus 164 v~GD~g~~~~~~~---tl~~~~~~---~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~----~~~~l~-~~~P~~~~~GN 232 (466)
.++|.|.+..... .+...++. +.|.+.++||++. ++.. +..|.+..+ .+..++ ...|++.++||
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd--~w~g---~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN 76 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFD--GWIG---DDEPPQLHRQVAQKLLRLARKGTRVYYIHGN 76 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhh--hhhc---CCcccHHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 5899998854322 23333333 4599999999994 4432 223444432 233333 45999999999
Q ss_pred ceeeccCcCCccccccccccccc-CCCCCCCCCCCceEEEeeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCe
Q 012311 233 HEIEYMTYMGEVVPFKSYLHRYP-TPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPW 311 (466)
Q Consensus 233 HE~~~~~~~~~~~~f~~y~~rf~-~P~~~~~~~~~~yYsf~~g~v~fI~Lds~~~~~~~~~Q~~WL~~~L~~~~r~~~~w 311 (466)
||.--. ..|...+. +- ..+.+=-+++-+-.++++-.- .+-....++.|+...... +|
T Consensus 77 ~Dfll~---------~~f~~~~g~~~------l~~~~~~~~l~g~~~Ll~HGD-~f~t~~~~y~~~r~~~~~------~~ 134 (237)
T COG2908 77 HDFLLG---------KRFAQEAGGMT------LLPDPIVLDLYGKRILLAHGD-TFCTDDRAYQWFRYKVHW------AW 134 (237)
T ss_pred hHHHHH---------HHHHhhcCceE------EcCcceeeeecCcEEEEEeCC-cccchHHHHHHHHHHccc------HH
Confidence 996421 11111111 00 011222233333445544331 122234455555443221 11
Q ss_pred EE-EEeccc----------cccCCCc--c-cccC----HHHHHHHHHHHHHcCCcEEEecccceecCCcccccCCCCCcE
Q 012311 312 LI-VLMHVP----------IYNSNEA--H-FMEG----ESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPV 373 (466)
Q Consensus 312 ~I-V~~H~P----------~y~s~~~--h-~~~~----~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~v 373 (466)
.. .+.+.| +.+-..+ + .... ..+.+.....+.+++||.+++||.|.-. ..+..++.
T Consensus 135 ~~~lflnl~l~~R~ri~~k~r~~s~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~a------i~~i~~~~ 208 (237)
T COG2908 135 LQLLFLNLPLRVRRRIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPA------IHNIPGIT 208 (237)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhHHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHh------hccCCCce
Confidence 11 111222 1111110 0 0011 1234566778999999999999987421 12344689
Q ss_pred EEEeCCCC
Q 012311 374 YITVGDGG 381 (466)
Q Consensus 374 yiv~G~gG 381 (466)
||+.|+--
T Consensus 209 yi~lGdW~ 216 (237)
T COG2908 209 YINLGDWV 216 (237)
T ss_pred EEecCcch
Confidence 99999876
No 79
>PHA02239 putative protein phosphatase
Probab=96.75 E-value=0.003 Score=60.72 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=40.5
Q ss_pred EEEEEccCCCCCCcH-HHHHHHHHh--CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceee
Q 012311 161 KFGIIGDLGQTYNSL-STLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~-~tl~~~~~~--~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
+++++||.|...... ..++.+.+. ..|.++++||++... . .. -......++.+....+++.++||||..
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG-~-----~s-~~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRG-K-----RS-KDVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCC-C-----Ch-HHHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 689999999643222 223333322 259999999999532 1 11 122222233223345789999999964
No 80
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=96.47 E-value=0.036 Score=50.64 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=55.6
Q ss_pred eEEEEEccCCCCCCc-HHHHHHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceeecc
Q 012311 160 YKFGIIGDLGQTYNS-LSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYM 238 (466)
Q Consensus 160 ~~f~v~GD~g~~~~~-~~tl~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~~~ 238 (466)
.++++++|+|..... ....+.....++|+|+|+||.+..... +.+... -..+++++.||.|.+..
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~~---------~~l~~~-----~~~~i~~V~GN~D~~~~ 67 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFTL---------DALEGG-----LAAKLIAVRGNCDGEVD 67 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccch---------HHhhcc-----cccceEEEEccCCCccc
Confidence 489999999987642 222233334499999999999964221 111111 24689999999997521
Q ss_pred CcCCcccccccccccccCCCCCCCCCCCceEEEeeCCEEEEEEcC
Q 012311 239 TYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSS 283 (466)
Q Consensus 239 ~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yYsf~~g~v~fI~Lds 283 (466)
. . ..| .--.+..++++|+++-.
T Consensus 68 ~------------~--~~p---------~~~~~~~~g~ki~l~HG 89 (172)
T COG0622 68 Q------------E--ELP---------EELVLEVGGVKIFLTHG 89 (172)
T ss_pred c------------c--cCC---------hhHeEEECCEEEEEECC
Confidence 0 0 011 22457888899988876
No 81
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.46 E-value=0.009 Score=63.95 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=50.9
Q ss_pred CCCeEEEEEccCCCCCCc--HHHH----HHHH---------HhCCCEEEEcccccccccc-ccc-------ccchhHHHH
Q 012311 157 DASYKFGIIGDLGQTYNS--LSTL----EHYM---------ESGAQTVLFLGDLSYADRY-QFI-------DVGVRWDSW 213 (466)
Q Consensus 157 ~~~~~f~v~GD~g~~~~~--~~tl----~~~~---------~~~~dfvl~~GDl~Y~~~~-~~~-------d~~~~wd~~ 213 (466)
..+.++++++|+|.+... ...+ +.+. +.+++.++++||++...+. ... +...+.+.+
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l 320 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAA 320 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHH
Confidence 357899999999976532 1112 2223 3478999999999953221 100 001122345
Q ss_pred HHHHHHHhhcCCeEEcCCCceee
Q 012311 214 GRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 214 ~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
.++++.+...+|++.++||||..
T Consensus 321 ~~~L~~L~~~i~V~~ipGNHD~~ 343 (504)
T PRK04036 321 AEYLKQIPEDIKIIISPGNHDAV 343 (504)
T ss_pred HHHHHhhhcCCeEEEecCCCcch
Confidence 55666666788999999999974
No 82
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=96.42 E-value=0.0041 Score=58.54 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=39.0
Q ss_pred EEEEEccCCCCCCcHHHHHHHHH-----hCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCcee
Q 012311 161 KFGIIGDLGQTYNSLSTLEHYME-----SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 235 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~tl~~~~~-----~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~ 235 (466)
|++++||.|... ..+..+.+ .++|.++++||++..... . . +.++.+.. .+++.+.||||.
T Consensus 2 ri~~isDiHg~~---~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~------~--~---~~~~~l~~-~~~~~v~GNhe~ 66 (207)
T cd07424 2 RDFVVGDIHGHY---SLLQKALDAVGFDPARDRLISVGDLIDRGPE------S--L---ACLELLLE-PWFHAVRGNHEQ 66 (207)
T ss_pred CEEEEECCCCCH---HHHHHHHHHcCCCCCCCEEEEeCCcccCCCC------H--H---HHHHHHhc-CCEEEeECCChH
Confidence 689999999643 33443332 158999999999953221 1 1 22332222 468899999996
Q ss_pred e
Q 012311 236 E 236 (466)
Q Consensus 236 ~ 236 (466)
.
T Consensus 67 ~ 67 (207)
T cd07424 67 M 67 (207)
T ss_pred H
Confidence 4
No 83
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=96.29 E-value=0.0058 Score=58.70 Aligned_cols=68 Identities=28% Similarity=0.371 Sum_probs=40.6
Q ss_pred EEEEEccCCCCCCcHHH-HHHHH---Hh-------CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEc
Q 012311 161 KFGIIGDLGQTYNSLST-LEHYM---ES-------GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWS 229 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~t-l~~~~---~~-------~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~ 229 (466)
+++++||.|........ ++.+. +. +.|.++++||++... .. -.+-.+.+..+...-.+..+
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG-~~-------s~evl~~l~~l~~~~~~~~v 73 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRG-PD-------SPEVLRLVMSMVAAGAALCV 73 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCC-CC-------HHHHHHHHHHHhhCCcEEEE
Confidence 68999999985543322 22221 00 258999999999532 11 12233444444333467899
Q ss_pred CCCceee
Q 012311 230 AGNHEIE 236 (466)
Q Consensus 230 ~GNHE~~ 236 (466)
.||||..
T Consensus 74 ~GNHE~~ 80 (234)
T cd07423 74 PGNHDNK 80 (234)
T ss_pred ECCcHHH
Confidence 9999964
No 84
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=96.22 E-value=0.0067 Score=59.74 Aligned_cols=66 Identities=26% Similarity=0.313 Sum_probs=40.3
Q ss_pred EEEEEccCCCCCCcHH-HHHHHH-HhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceee
Q 012311 161 KFGIIGDLGQTYNSLS-TLEHYM-ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~-tl~~~~-~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
+++++||.|....... .++.+. +.+.|.++++||++..... . .+..+.+..+ ..++.++.||||..
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~------s--~~vl~~l~~l--~~~~~~VlGNHD~~ 69 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPD------S--LEVLRFVKSL--GDSAVTVLGNHDLH 69 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcC------H--HHHHHHHHhc--CCCeEEEecChhHH
Confidence 5789999997554332 222221 1257999999999953211 1 2223333332 34688999999974
No 85
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=96.22 E-value=0.012 Score=57.09 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=39.8
Q ss_pred EEEEEccCCCCCCcHHHHHHHHHh-------------CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeE
Q 012311 161 KFGIIGDLGQTYNSLSTLEHYMES-------------GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWI 227 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~tl~~~~~~-------------~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~ 227 (466)
|++|+||.|... ..+.++.+. +-|.++++||++.. |..+ .+-.+.+..+...-.++
T Consensus 2 ~~~vIGDIHG~~---~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDR-Gp~S-------~~vl~~~~~~~~~~~~~ 70 (245)
T PRK13625 2 KYDIIGDIHGCY---QEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDR-GPHS-------LRMIEIVWELVEKKAAY 70 (245)
T ss_pred ceEEEEECccCH---HHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCC-CcCh-------HHHHHHHHHHhhCCCEE
Confidence 689999999744 334443332 23689999999953 2211 12223333333345789
Q ss_pred EcCCCceee
Q 012311 228 WSAGNHEIE 236 (466)
Q Consensus 228 ~~~GNHE~~ 236 (466)
++.||||..
T Consensus 71 ~l~GNHE~~ 79 (245)
T PRK13625 71 YVPGNHCNK 79 (245)
T ss_pred EEeCccHHH
Confidence 999999953
No 86
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=96.20 E-value=0.1 Score=56.53 Aligned_cols=76 Identities=17% Similarity=0.055 Sum_probs=42.8
Q ss_pred CceEEEeeCC--EEEEEEcCCCC-C-----CC-----C--hHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCccccc
Q 012311 266 PLWYAIRRAS--AHIIVLSSYSP-F-----VK-----Y--TPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFME 330 (466)
Q Consensus 266 ~~yYsf~~g~--v~fI~Lds~~~-~-----~~-----~--~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~ 330 (466)
..|.-++.++ |-||.|.+... . +. . ..-.+|. ++|++ .+..-+|++.|.....
T Consensus 129 ~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v-~~Lk~---~g~D~II~lsH~g~~~-------- 196 (550)
T TIGR01530 129 KPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDEIAAAQIAA-NALKQ---QGINKIILLSHAGFEK-------- 196 (550)
T ss_pred CceEEEEECCeEEEEEEeecCcccccccCCCCceEECCHHHHHHHHH-HHHHh---CCCCEEEEEecCCcHH--------
Confidence 3566678887 56777754211 0 00 0 1111222 33544 4678899999975311
Q ss_pred CHHHHHHHHHHHHH-cCCcEEEecccceecC
Q 012311 331 GESMRAAFESWFVR-YKVDYRISNLHYNISS 360 (466)
Q Consensus 331 ~~~~r~~l~~ll~~-y~Vd~~~~gh~~~~~~ 360 (466)
.. .|.++ -+||+++.||.|.+..
T Consensus 197 d~-------~la~~~~~iD~IigGHsH~~~~ 220 (550)
T TIGR01530 197 NC-------EIAQKINDIDVIVSGDSHYLLG 220 (550)
T ss_pred HH-------HHHhcCCCCCEEEeCCCCcccc
Confidence 11 12222 2899999999997654
No 87
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.12 E-value=0.011 Score=56.98 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=45.0
Q ss_pred EEEccCCCCCCc--HHHHHHHH----Hh-----CCCEEEEccccccccccccc--------ccchhHHHHHHHHHHHhhc
Q 012311 163 GIIGDLGQTYNS--LSTLEHYM----ES-----GAQTVLFLGDLSYADRYQFI--------DVGVRWDSWGRFVERSAAY 223 (466)
Q Consensus 163 ~v~GD~g~~~~~--~~tl~~~~----~~-----~~dfvl~~GDl~Y~~~~~~~--------d~~~~wd~~~~~~~~l~~~ 223 (466)
++++|+|.+... ...++.+. .. ++|.++++||++........ +....+..+.+.++.+.+.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 578999975432 22222222 22 46999999999954211000 0012244455666777778
Q ss_pred CCeEEcCCCceee
Q 012311 224 QPWIWSAGNHEIE 236 (466)
Q Consensus 224 ~P~~~~~GNHE~~ 236 (466)
+|+++++||||..
T Consensus 82 ~~v~~ipGNHD~~ 94 (243)
T cd07386 82 IKIIIIPGNHDAV 94 (243)
T ss_pred CeEEEeCCCCCcc
Confidence 9999999999974
No 88
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=96.10 E-value=0.082 Score=53.13 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=25.9
Q ss_pred CCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHc-CCcEEEecccceec
Q 012311 307 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVDYRISNLHYNIS 359 (466)
Q Consensus 307 ~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y-~Vd~~~~gh~~~~~ 359 (466)
.+..-+|++.|.--+. +.. .|..+. +||+++.||.|...
T Consensus 206 ~gvD~II~LsH~g~~~-------~d~-------~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 206 QGINKIILLSHLQQIS-------IEQ-------ALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred CCCCEEEEEecccccc-------hHH-------HHHhcCCCCCEEEeCCCCccC
Confidence 4678899999973111 111 234443 89999999999754
No 89
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.09 E-value=0.0067 Score=59.29 Aligned_cols=176 Identities=16% Similarity=0.091 Sum_probs=91.5
Q ss_pred EEEEccCCCCCCcH-HHHHHHHHh---CCCEEEEcccccccccccccc-c-----chhHHHHHHHHHHHh-hcCCeEEcC
Q 012311 162 FGIIGDLGQTYNSL-STLEHYMES---GAQTVLFLGDLSYADRYQFID-V-----GVRWDSWGRFVERSA-AYQPWIWSA 230 (466)
Q Consensus 162 f~v~GD~g~~~~~~-~tl~~~~~~---~~dfvl~~GDl~Y~~~~~~~d-~-----~~~wd~~~~~~~~l~-~~~P~~~~~ 230 (466)
|+|.||.+...... ..++.+.+. ++|++|.+||+.-.......+ + ...+..|.+.++... ..+|++.+.
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 57899998754322 223444332 699999999996321111000 0 012334444433322 466779999
Q ss_pred CCceeeccCcCCcccccccccccccCCCCCCCCCCCce-----EEEeeCCEEEEEEcCCC---CCC-------C-ChHHH
Q 012311 231 GNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLW-----YAIRRASAHIIVLSSYS---PFV-------K-YTPQW 294 (466)
Q Consensus 231 GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~y-----Ysf~~g~v~fI~Lds~~---~~~-------~-~~~Q~ 294 (466)
||||.... +.. +|..+ ....+.+ ..|++++++|..|.... ++. . ...++
T Consensus 81 GNHE~~~~-----------l~~---l~~gg-~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~ 145 (262)
T cd00844 81 GNHEASNY-----------LWE---LPYGG-WVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTK 145 (262)
T ss_pred CCCCCHHH-----------HHh---hcCCC-eecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHH
Confidence 99995311 100 11100 0011233 24667899999988622 111 1 12333
Q ss_pred HHHH-------HHHhhccCCCCCeEEEEeccccccCCCcccccCH-----------------HHHHHHHHHHHHcCCcEE
Q 012311 295 EWLR-------EELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGE-----------------SMRAAFESWFVRYKVDYR 350 (466)
Q Consensus 295 ~WL~-------~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~-----------------~~r~~l~~ll~~y~Vd~~ 350 (466)
..+. ..|... ..+-=|++.|.|+...... .+.. .--..+..|+++.+=.+.
T Consensus 146 rs~y~~r~~~~~kl~~~---~~~vDIlLSHdWP~gI~~~--~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryh 220 (262)
T cd00844 146 RSAYHVRNIEVFKLKQL---KQPIDIFLSHDWPRGIYKH--GDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYW 220 (262)
T ss_pred HHhhhhhHHHHHHHHhc---CCCCcEEEeCCCCcchhhc--cchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEE
Confidence 3211 112221 1123599999999875432 1100 012356678999999999
Q ss_pred Eecccce
Q 012311 351 ISNLHYN 357 (466)
Q Consensus 351 ~~gh~~~ 357 (466)
++||.|.
T Consensus 221 f~gH~H~ 227 (262)
T cd00844 221 FSAHLHV 227 (262)
T ss_pred EEecCCc
Confidence 9999764
No 90
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=95.97 E-value=0.017 Score=52.49 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=27.6
Q ss_pred CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceee
Q 012311 185 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 185 ~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
++|.|+++||++..... .. +.+.++.+ ..|++.++||||..
T Consensus 42 ~~d~vi~~GDl~~~~~~------~~---~~~~l~~~--~~~~~~v~GNHD~~ 82 (168)
T cd07390 42 PDDTVYHLGDFSFGGKA------GT---ELELLSRL--NGRKHLIKGNHDSS 82 (168)
T ss_pred CCCEEEEeCCCCCCCCh------HH---HHHHHHhC--CCCeEEEeCCCCch
Confidence 68999999999964221 11 12333332 36899999999964
No 91
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=95.95 E-value=0.019 Score=54.64 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=48.5
Q ss_pred eEEEEEccCCCCCCcH-----------------HHHHHHHHh-CCCEEEEcccccccccccccccchhHHHHHHHHHHHh
Q 012311 160 YKFGIIGDLGQTYNSL-----------------STLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA 221 (466)
Q Consensus 160 ~~f~v~GD~g~~~~~~-----------------~tl~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~ 221 (466)
-+.+|++|+|.+.... ..+.++.+. +|+-++.+||+-.+-+... ...|+....+++.+.
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~---~~e~~~~~~f~~~~~ 96 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSL---RQEKEEVREFLELLD 96 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccc---cccHHHHHHHHHHhc
Confidence 3689999999876311 123333333 9999999999997654321 344555555555444
Q ss_pred hcCCeEEcCCCceee
Q 012311 222 AYQPWIWSAGNHEIE 236 (466)
Q Consensus 222 ~~~P~~~~~GNHE~~ 236 (466)
.. -|+++.||||..
T Consensus 97 ~~-evi~i~GNHD~~ 110 (235)
T COG1407 97 ER-EVIIIRGNHDNG 110 (235)
T ss_pred cC-cEEEEeccCCCc
Confidence 33 599999999965
No 92
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.86 E-value=0.24 Score=55.77 Aligned_cols=58 Identities=14% Similarity=-0.003 Sum_probs=32.6
Q ss_pred HHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceec
Q 012311 297 LREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNIS 359 (466)
Q Consensus 297 L~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~ 359 (466)
+++...+.....+.-+|++.|.-+-........++. . ..|-.--|||.++.||.|...
T Consensus 298 a~~~v~~Lr~~GaDvIIaLsH~G~~~d~~~~~~En~--~---~~LA~v~GIDaIvgGHsH~~~ 355 (814)
T PRK11907 298 VRDIIPTMRAAGADIVLVLSHSGIGDDQYEVGEENV--G---YQIASLSGVDAVVTGHSHAEF 355 (814)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCcccccccccccch--h---hHHhcCCCCCEEEECCCCCcc
Confidence 444433333256888999999886432111111111 1 123233589999999998753
No 93
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=95.77 E-value=0.012 Score=55.88 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=38.6
Q ss_pred EEEEEccCCCCCCcHHH-HHHHH-HhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceee
Q 012311 161 KFGIIGDLGQTYNSLST-LEHYM-ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~t-l~~~~-~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
|++++||.|........ ++.+. ..+.|.++++||++.....+ . +.++.+. ...+..+.||||..
T Consensus 16 ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~--------~---~~l~~l~-~~~~~~v~GNHE~~ 81 (218)
T PRK09968 16 HIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPES--------L---NVLRLLN-QPWFISVKGNHEAM 81 (218)
T ss_pred eEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCH--------H---HHHHHHh-hCCcEEEECchHHH
Confidence 89999999875433222 22221 12679999999999532211 1 2222222 23478999999964
No 94
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=95.50 E-value=0.019 Score=54.12 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=38.6
Q ss_pred EEEccCCCCCCcHHHHHHHHH------------hCCCEEEEcccccccccccccccchhHHHHHHHHHHH-----hhcCC
Q 012311 163 GIIGDLGQTYNSLSTLEHYME------------SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS-----AAYQP 225 (466)
Q Consensus 163 ~v~GD~g~~~~~~~tl~~~~~------------~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l-----~~~~P 225 (466)
+++||+|.... .+.++.+ .+.|.++++||++..... . .+..+.+..+ ....+
T Consensus 1 ~vi~DIHG~~~---~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~------~--~~vl~~l~~l~~~~~~~~~~ 69 (208)
T cd07425 1 VAIGDLHGDLD---AFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPD------V--IEILWLLYKLEQEAAKAGGK 69 (208)
T ss_pred CEEeCccCCHH---HHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcC------H--HHHHHHHHHHHHHHHhcCCe
Confidence 37999987543 3333332 257899999999943211 1 1222333222 23468
Q ss_pred eEEcCCCceee
Q 012311 226 WIWSAGNHEIE 236 (466)
Q Consensus 226 ~~~~~GNHE~~ 236 (466)
++++.||||..
T Consensus 70 v~~l~GNHE~~ 80 (208)
T cd07425 70 VHFLLGNHELM 80 (208)
T ss_pred EEEeeCCCcHH
Confidence 99999999975
No 95
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=95.36 E-value=0.022 Score=54.26 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=38.2
Q ss_pred EEEEccCCCCCCcHH-HHHHHHHh--------CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCC
Q 012311 162 FGIIGDLGQTYNSLS-TLEHYMES--------GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGN 232 (466)
Q Consensus 162 f~v~GD~g~~~~~~~-tl~~~~~~--------~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GN 232 (466)
+.+|||.|....... .++++... ..|.++++||++... ..+ .+-.+.+..+...-.++.+.||
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRG-p~S-------~~vl~~l~~l~~~~~~~~l~GN 72 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRG-PEI-------RELLEIVKSMVDAGHALAVMGN 72 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCC-CCH-------HHHHHHHHHhhcCCCEEEEEcc
Confidence 468999997543322 22222111 257899999999432 111 2223333333333368889999
Q ss_pred ceee
Q 012311 233 HEIE 236 (466)
Q Consensus 233 HE~~ 236 (466)
||..
T Consensus 73 HE~~ 76 (222)
T cd07413 73 HEFN 76 (222)
T ss_pred CcHH
Confidence 9964
No 96
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=95.25 E-value=0.47 Score=46.19 Aligned_cols=138 Identities=12% Similarity=0.126 Sum_probs=75.7
Q ss_pred EEEEccCCCCCCcH--HHHHHHHH---------------hCCCEEEEccccccccccccc--------------ccchhH
Q 012311 162 FGIIGDLGQTYNSL--STLEHYME---------------SGAQTVLFLGDLSYADRYQFI--------------DVGVRW 210 (466)
Q Consensus 162 f~v~GD~g~~~~~~--~tl~~~~~---------------~~~dfvl~~GDl~Y~~~~~~~--------------d~~~~w 210 (466)
++.++|++.+.... ..++.+.+ .+..-+|.+||.+...+.... +.....
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAV 81 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHHH
Confidence 67888888765432 12222211 133469999999975432110 112345
Q ss_pred HHHHHHHHHHhhcCCeEEcCCCceeeccCcCCcccccccccccccCCCC-CCCCCCCceEEEeeCCEEEEEEcCCC----
Q 012311 211 DSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHL-ASKSSSPLWYAIRRASAHIIVLSSYS---- 285 (466)
Q Consensus 211 d~~~~~~~~l~~~~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~-~~~~~~~~yYsf~~g~v~fI~Lds~~---- 285 (466)
+++..++..+.+.+|+.+.|||||-..... -+.++.. ..|..-.. .+-..-..-|.|++++++|++.....
T Consensus 82 ~~ld~~l~~l~~~i~V~imPG~~Dp~~~~l--PQqplh~--~lfp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di 157 (257)
T cd07387 82 KELDNFLSQLASSVPVDLMPGEFDPANHSL--PQQPLHR--CLFPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDI 157 (257)
T ss_pred HHHHHHHHhhhcCCeEEECCCCCCcccccC--CCCCCCH--HHhhcccccCCcEEeCCCeEEEECCEEEEEECCCCHHHH
Confidence 566777888888999999999999753210 1122210 11110000 00000112256999999999888753
Q ss_pred -CCCCChHHHHHHHHHHhh
Q 012311 286 -PFVKYTPQWEWLREELKK 303 (466)
Q Consensus 286 -~~~~~~~Q~~WL~~~L~~ 303 (466)
.|.....-.+.|+..|+.
T Consensus 158 ~ky~~~~~~l~~me~~L~w 176 (257)
T cd07387 158 LKYSSLESRLDILERTLKW 176 (257)
T ss_pred HHhCCCCCHHHHHHHHHHh
Confidence 122333446778887775
No 97
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=95.25 E-value=0.024 Score=53.86 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=38.5
Q ss_pred EEEEEccCCCCCCcHH-HHHHHHHh-CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceee
Q 012311 161 KFGIIGDLGQTYNSLS-TLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~-tl~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
|++++||.|....... .++.+... +.|-++++||++.....+ .+.++-+. ...+..+.||||..
T Consensus 18 ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s-----------~~vl~~l~-~~~~~~v~GNHE~~ 83 (218)
T PRK11439 18 HIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQS-----------LRCLQLLE-EHWVRAVRGNHEQM 83 (218)
T ss_pred eEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCH-----------HHHHHHHH-cCCceEeeCchHHH
Confidence 8999999998543322 23333222 568999999999432111 12222222 23467899999964
No 98
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.03 E-value=0.31 Score=57.65 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=30.9
Q ss_pred CCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHH-cCCcEEEecccceecC
Q 012311 307 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDYRISNLHYNISS 360 (466)
Q Consensus 307 ~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~-y~Vd~~~~gh~~~~~~ 360 (466)
.++.-+|++.|...-..... ...+ +....|.++ -+||.++.||.|....
T Consensus 233 ~gaDvII~l~H~G~~~~~~~--~~~e---n~~~~la~~~~gID~Il~GHsH~~~~ 282 (1163)
T PRK09419 233 GGADVIVALAHSGIESEYQS--SGAE---DSVYDLAEKTKGIDAIVAGHQHGLFP 282 (1163)
T ss_pred cCCCEEEEEeccCcCCCCCC--CCcc---hHHHHHHHhCCCCcEEEeCCCccccc
Confidence 56888999999987543211 1111 222334434 4899999999987643
No 99
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=94.92 E-value=0.05 Score=53.71 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=40.0
Q ss_pred EEEEEccCCCCCCcHHH-HHHHHHh------CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcC---CeEEcC
Q 012311 161 KFGIIGDLGQTYNSLST-LEHYMES------GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQ---PWIWSA 230 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~t-l~~~~~~------~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~---P~~~~~ 230 (466)
++.++||.|........ ++.+.+. ..+.++++||++.. .+. . ....+++..+...- .++.+.
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDR--GPd---S---~eVld~L~~l~~~~~~~~vv~Lr 74 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDR--GPE---T---RKVIDFLISLPEKHPKQRHVFLC 74 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCC--CCC---H---HHHHHHHHHhhhcccccceEEEe
Confidence 68899999986543332 3334322 24689999999943 211 1 22233333332222 478899
Q ss_pred CCceee
Q 012311 231 GNHEIE 236 (466)
Q Consensus 231 GNHE~~ 236 (466)
||||..
T Consensus 75 GNHE~~ 80 (304)
T cd07421 75 GNHDFA 80 (304)
T ss_pred cCChHH
Confidence 999954
No 100
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=94.92 E-value=0.041 Score=52.01 Aligned_cols=62 Identities=23% Similarity=0.220 Sum_probs=37.7
Q ss_pred EEccCCCCCCcHHHHHHHHH----hCCCEEEEcccccccccccccccchhHHHHHHHHHHHhh-cCCeEEcCCCceee
Q 012311 164 IIGDLGQTYNSLSTLEHYME----SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEIE 236 (466)
Q Consensus 164 v~GD~g~~~~~~~tl~~~~~----~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~-~~P~~~~~GNHE~~ 236 (466)
++||+|... ..+..+.+ ...|.++++||++..... . .+..+.+..+.. ..+++.+.||||..
T Consensus 2 ~igDiHg~~---~~l~~~l~~~~~~~~d~li~lGD~vdrg~~------~--~~~l~~l~~~~~~~~~~~~l~GNHe~~ 68 (225)
T cd00144 2 VIGDIHGCL---DDLLRLLEKIGFPPNDKLIFLGDYVDRGPD------S--VEVIDLLLALKILPDNVILLRGNHEDM 68 (225)
T ss_pred EEeCCCCCH---HHHHHHHHHhCCCCCCEEEEECCEeCCCCC------c--HHHHHHHHHhcCCCCcEEEEccCchhh
Confidence 799999643 33333333 368999999999953211 1 222233322211 34789999999975
No 101
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=94.91 E-value=3.2 Score=39.75 Aligned_cols=193 Identities=16% Similarity=0.189 Sum_probs=104.0
Q ss_pred eEEEEEccCCCCCCcH---HHHHHHHHh-CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCcee
Q 012311 160 YKFGIIGDLGQTYNSL---STLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 235 (466)
Q Consensus 160 ~~f~v~GD~g~~~~~~---~tl~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~ 235 (466)
+|++++||+=....-. .-|..+.+. ++|||+..|-++-..- .-.|+.+.++++. .+- .++.|||=+
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~------Git~k~y~~l~~~---G~d-viT~GNH~w 70 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGF------GITEKIYKELLEA---GAD-VITLGNHTW 70 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCc------CCCHHHHHHHHHh---CCC-EEecccccc
Confidence 4899999984433211 223444444 8999999999996432 2345555555543 232 468999988
Q ss_pred eccCcCCcccccccccccccCCCCCCC-CCCCceEEEeeCCEEEEEEcCCCC--CC-CChHHHHHHHHHHhhccCCCCCe
Q 012311 236 EYMTYMGEVVPFKSYLHRYPTPHLASK-SSSPLWYAIRRASAHIIVLSSYSP--FV-KYTPQWEWLREELKKVDREKTPW 311 (466)
Q Consensus 236 ~~~~~~~~~~~f~~y~~rf~~P~~~~~-~~~~~yYsf~~g~v~fI~Lds~~~--~~-~~~~Q~~WL~~~L~~~~r~~~~w 311 (466)
+.. +. ..|-.-..++-.|.|-+. ..+.-|+-|+..+..+.+++-... .. ....=.+=+++.|.+.+ .+++-
T Consensus 71 d~~-ei---~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~-~~~~~ 145 (266)
T COG1692 71 DQK-EI---LDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIK-LGTDL 145 (266)
T ss_pred cch-HH---HHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHHHHHHHHhCc-cCCce
Confidence 632 11 111111123334554322 234567777887777766665321 11 01111233555555543 46688
Q ss_pred EEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEecccceecCCcccccCCCCCcEEEE-eCCCCC
Q 012311 312 LIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPVYIT-VGDGGN 382 (466)
Q Consensus 312 ~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv-~G~gG~ 382 (466)
+||-+|.---| ..++| -++-+-+|..++.-|.|-...+.- .-++|+.||+ +|.-|.
T Consensus 146 iiVDFHAEtTS-----------EK~a~-g~yldGrvsavvGTHTHV~TaD~r---IL~~GTayiTDvGMtG~ 202 (266)
T COG1692 146 IIVDFHAETTS-----------EKNAF-GWYLDGRVSAVVGTHTHVPTADER---ILPKGTAYITDVGMTGP 202 (266)
T ss_pred EEEEccccchh-----------hhhhh-heEEcCeEEEEEeccCccccccce---ecCCCcEEEecCccccc
Confidence 99999964322 11122 244445677888778764333221 2467899987 344443
No 102
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=94.82 E-value=0.041 Score=53.65 Aligned_cols=64 Identities=25% Similarity=0.290 Sum_probs=38.4
Q ss_pred EEEccCCCCCCcHHH-HHHHHHh-CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceee
Q 012311 163 GIIGDLGQTYNSLST-LEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 163 ~v~GD~g~~~~~~~t-l~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
.+|||.|........ ++++... +.|.++++||++..... . .+..+++..+. ..+..+.||||..
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~------s--~evl~~l~~l~--~~v~~VlGNHD~~ 67 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPD------S--LETLRFVKSLG--DSAKTVLGNHDLH 67 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcC------H--HHHHHHHHhcC--CCeEEEcCCchHH
Confidence 579999975443322 2233212 57999999999953211 1 22333443332 3678999999975
No 103
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=94.74 E-value=0.076 Score=53.04 Aligned_cols=109 Identities=18% Similarity=0.194 Sum_probs=67.0
Q ss_pred eEEEEEccCCCCCC-cHHHHHHHHHh---CCCEEEEcccccccccccc---cccchhHHHHHHHHH----HHhhcCCeEE
Q 012311 160 YKFGIIGDLGQTYN-SLSTLEHYMES---GAQTVLFLGDLSYADRYQF---IDVGVRWDSWGRFVE----RSAAYQPWIW 228 (466)
Q Consensus 160 ~~f~v~GD~g~~~~-~~~tl~~~~~~---~~dfvl~~GDl~Y~~~~~~---~d~~~~wd~~~~~~~----~l~~~~P~~~ 228 (466)
+|++|-|++|..-+ -..++..+.+. +.|++|..||+---.+... -.+.+.+.....++. ...+.+|.+.
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 47899999987543 34577777776 8999999999874322211 012333333333433 3346788999
Q ss_pred cCCCceeeccCcCCcccccccccccccCCCCCCCCCCCceE-----EEeeCCEEEEEEcC
Q 012311 229 SAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWY-----AIRRASAHIIVLSS 283 (466)
Q Consensus 229 ~~GNHE~~~~~~~~~~~~f~~y~~rf~~P~~~~~~~~~~yY-----sf~~g~v~fI~Lds 283 (466)
+-||||..+- ...+|+.| -...+.|| ..++|+|++-.|+.
T Consensus 81 IGGNHEAsny--------------L~eLpyGG-wVApNIyYlG~agVv~~~gvRIggiSG 125 (456)
T KOG2863|consen 81 IGGNHEASNY--------------LQELPYGG-WVAPNIYYLGYAGVVNFGGVRIGGISG 125 (456)
T ss_pred ecCchHHHHH--------------HHhcccCc-eeccceEEeeecceEEECCEEEeeccc
Confidence 9999997531 11123221 01124565 36789999998887
No 104
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=94.55 E-value=1.3 Score=50.00 Aligned_cols=49 Identities=18% Similarity=0.098 Sum_probs=29.7
Q ss_pred CCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHc-CCcEEEecccceecCC
Q 012311 307 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVDYRISNLHYNISSG 361 (466)
Q Consensus 307 ~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y-~Vd~~~~gh~~~~~~~ 361 (466)
..+.-+||+.|..+-.... ..+ +..+-.. +.+. +||+++.||.|....+
T Consensus 243 ~GaDvIIaLsH~G~~~d~~---~~~--~ena~~~-l~~v~gID~IlgGHsH~~~~~ 292 (780)
T PRK09418 243 EGADVIVALAHSGVDKSGY---NVG--MENASYY-LTEVPGVDAVLMGHSHTEVKD 292 (780)
T ss_pred cCCCEEEEEeccCcccccc---ccc--chhhhHH-HhcCCCCCEEEECCCCCcccc
Confidence 4688899999987643211 111 1111112 3443 8999999999976543
No 105
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=94.43 E-value=0.096 Score=54.97 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=34.5
Q ss_pred CCCeEEEEEccCCCCCC---------cHHHHHHH---HH-hCCCEEEEcccccccccc
Q 012311 157 DASYKFGIIGDLGQTYN---------SLSTLEHY---ME-SGAQTVLFLGDLSYADRY 201 (466)
Q Consensus 157 ~~~~~f~v~GD~g~~~~---------~~~tl~~~---~~-~~~dfvl~~GDl~Y~~~~ 201 (466)
+..+|++|..|.|.++. +..+++.+ ++ ++.||||..||++..+..
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkP 68 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKP 68 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCc
Confidence 35799999999998763 45565554 33 499999999999987654
No 106
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=94.42 E-value=0.19 Score=55.31 Aligned_cols=86 Identities=23% Similarity=0.414 Sum_probs=53.7
Q ss_pred CCCceE-EEeeecCCCCcEEEEEEcCCCCCCc----EEEEeecCCCCceEEEeEEEEeeeeccccceEEEEEecCCCCCC
Q 012311 57 NSPQQV-HITQGDYDGKAVIISWVTPHEPGPS----TVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDT 131 (466)
Q Consensus 57 ~~P~qv-~lt~~~~~~~~~~V~W~t~~~~~~~----~V~yg~~~~~~~~~a~g~~~~y~~~~~~~~~~h~v~l~gL~P~T 131 (466)
.+|.+| +|-+.....++++++|.-++.+... .|+|-+...+ ..+|+. -......|+|+||+|||
T Consensus 441 a~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~--------e~~~~~---~~t~~~~~ti~gL~p~t 509 (996)
T KOG0196|consen 441 AAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDED--------ERSYST---LKTKTTTATITGLKPGT 509 (996)
T ss_pred cCCCccceEEEeeeccCceEEecCCCCCCCCcceeEEEEEeecccc--------ccceeE---EecccceEEeeccCCCc
Confidence 344442 2233333568999999998766433 4555554311 011110 01123458999999999
Q ss_pred EEEEEecc------CCccceEEEECCCC
Q 012311 132 KYYYKIGS------GDSSREFWFQTPPK 153 (466)
Q Consensus 132 ~Y~Yrv~~------~~~s~~~~F~T~p~ 153 (466)
.|.+||.. |..|....|.|.|.
T Consensus 510 ~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 510 VYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred EEEEEEEEecccCCCCCCCceeeeecCc
Confidence 99999964 35688899999986
No 107
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=93.70 E-value=0.27 Score=47.23 Aligned_cols=86 Identities=9% Similarity=0.009 Sum_probs=48.8
Q ss_pred ceEEEeeCC--EEEEEEcCCCCC-----C-----CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHH
Q 012311 267 LWYAIRRAS--AHIIVLSSYSPF-----V-----KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESM 334 (466)
Q Consensus 267 ~yYsf~~g~--v~fI~Lds~~~~-----~-----~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~ 334 (466)
.+..++.++ +-||.+-+...- . ....-.+-+++.+++++ .+...+||+.|-..-.. ......
T Consensus 122 ~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr-~~~D~vIv~~H~G~e~~-----~~p~~~ 195 (239)
T cd07381 122 RPAILEVNGIKVAFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAK-KKADIVIVSLHWGVEYS-----YYPTPE 195 (239)
T ss_pred CcEEEEECCEEEEEEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHh-hcCCEEEEEecCcccCC-----CCCCHH
Confidence 455677777 556665543210 0 01111234555565553 24889999999543111 112223
Q ss_pred HHHHHHHHHHcCCcEEEeccccee
Q 012311 335 RAAFESWFVRYKVDYRISNLHYNI 358 (466)
Q Consensus 335 r~~l~~ll~~y~Vd~~~~gh~~~~ 358 (466)
+..+...+.+.|||+++.+|.|-+
T Consensus 196 ~~~la~~l~~~G~D~IiG~H~Hv~ 219 (239)
T cd07381 196 QRELARALIDAGADLVIGHHPHVL 219 (239)
T ss_pred HHHHHHHHHHCCCCEEEcCCCCcC
Confidence 345555666789999999998854
No 108
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=93.54 E-value=0.15 Score=58.24 Aligned_cols=81 Identities=23% Similarity=0.416 Sum_probs=50.7
Q ss_pred CCCceEEEeeecCCCCcEEEEEEcCCCCCC------cEEEEeecCCCCc---eEEEeEEEEeeeeccccceEEEEEecCC
Q 012311 57 NSPQQVHITQGDYDGKAVIISWVTPHEPGP------STVSYGTSADKFD---FTAEGTVNNYTFYKYKSGYIHQCLVDGL 127 (466)
Q Consensus 57 ~~P~qv~lt~~~~~~~~~~V~W~t~~~~~~------~~V~yg~~~~~~~---~~a~g~~~~y~~~~~~~~~~h~v~l~gL 127 (466)
.+|+.|.|-... +++++|+|..+..... -.++|++.+.... ..+.|+.+. -.+.+|
T Consensus 617 aPP~Nl~lev~s--StsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~-------------~l~~~L 681 (1381)
T KOG4221|consen 617 APPQNLSLEVVS--STSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQ-------------YLFNGL 681 (1381)
T ss_pred CCCcceEEEecC--CCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecccchhh-------------hHhhcC
Confidence 457778877664 7899999999853221 1345554433221 122232221 146789
Q ss_pred CCCCEEEEEecc------CCccceEEEECCC
Q 012311 128 EYDTKYYYKIGS------GDSSREFWFQTPP 152 (466)
Q Consensus 128 ~P~T~Y~Yrv~~------~~~s~~~~F~T~p 152 (466)
+|+|.|..||.. +..|++..|.|+-
T Consensus 682 ep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~ 712 (1381)
T KOG4221|consen 682 EPNTQYRVRISAMTVNGTGPASEWVSAETPE 712 (1381)
T ss_pred CCCceEEEEEEEeccCCCCCcccceeccCcc
Confidence 999999999954 3457788888864
No 109
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=93.54 E-value=0.11 Score=51.18 Aligned_cols=66 Identities=27% Similarity=0.331 Sum_probs=38.7
Q ss_pred EEEEEccCCCCCCcHHH-HHHHHHh-CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceee
Q 012311 161 KFGIIGDLGQTYNSLST-LEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~t-l~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
+..+|||.|........ ++++.-+ ..|-++++||++.....+ .+-.+++..+. -.+..+.||||..
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~s--------levL~~l~~l~--~~~~~VlGNHD~~ 69 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGS--------LEVLRYVKSLG--DAVRLVLGNHDLH 69 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCH--------HHHHHHHHhcC--CCeEEEEChhHHH
Confidence 46789999986543332 3333212 468999999999532211 22233333331 2356899999964
No 110
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=93.51 E-value=0.092 Score=50.90 Aligned_cols=169 Identities=13% Similarity=0.146 Sum_probs=95.5
Q ss_pred EEEEccccccccccccccc--chhHHHHHHH----HHHHhhcCCeEEcCCCceeeccCcC--Ccc--cccccccc-----
Q 012311 188 TVLFLGDLSYADRYQFIDV--GVRWDSWGRF----VERSAAYQPWIWSAGNHEIEYMTYM--GEV--VPFKSYLH----- 252 (466)
Q Consensus 188 fvl~~GDl~Y~~~~~~~d~--~~~wd~~~~~----~~~l~~~~P~~~~~GNHE~~~~~~~--~~~--~~f~~y~~----- 252 (466)
-++..||++-..+...-++ ..+...|..- +.+....+|+++-.||||.+..... -+. ...+.|..
T Consensus 129 GlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~Hr~ 208 (392)
T COG5555 129 GLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYHRS 208 (392)
T ss_pred eEEeecceeccCCCcccCccccchhhchHhhhccCCCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhcCc
Confidence 4667789997655543321 1122222111 1133346899999999999743100 000 00122211
Q ss_pred -cccCCCCC--CCCCCCceEEEeeCCEEEEEEcCCCC-CCCC-hHHHHHHHHHHhhccCCCCCeEEEEecccc--ccCCC
Q 012311 253 -RYPTPHLA--SKSSSPLWYAIRRASAHIIVLSSYSP-FVKY-TPQWEWLREELKKVDREKTPWLIVLMHVPI--YNSNE 325 (466)
Q Consensus 253 -rf~~P~~~--~~~~~~~yYsf~~g~v~fI~Lds~~~-~~~~-~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~--y~s~~ 325 (466)
.|.-|... +-.....-||+|+|++|.+-+-.... -+.+ .--+-||+.+|........| ++++.|.-| +++..
T Consensus 209 ~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~Gd~~~ga~sslpwlk~dl~~~aadgrp-v~LfqhyGwdtfstea 287 (392)
T COG5555 209 DVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFIGDAEPGANSSLPWLKVDLIYSAADGRP-VYLFQHYGWDTFSTEA 287 (392)
T ss_pred CcccCCCCCcccccccchheeccccceeEEEEeeeccccCCCccccCcceeccceeeccCCCc-eeehhhhCccceeccc
Confidence 12112111 12234456999999999987776431 1111 23467999999975434444 788889876 33332
Q ss_pred cc--------ccc------CHHHHHHHHHHHHHcCCcEEEecccce
Q 012311 326 AH--------FME------GESMRAAFESWFVRYKVDYRISNLHYN 357 (466)
Q Consensus 326 ~h--------~~~------~~~~r~~l~~ll~~y~Vd~~~~gh~~~ 357 (466)
+. .++ .+..|.++...++-|+|-..+.||.|.
T Consensus 288 wdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd 333 (392)
T COG5555 288 WDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHD 333 (392)
T ss_pred cCchhcccccCCCCCCCCCCCCCcchHHHhhcCceeEEeccccccc
Confidence 21 011 245688999999999999999998763
No 111
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=93.43 E-value=0.63 Score=35.58 Aligned_cols=69 Identities=20% Similarity=0.396 Sum_probs=39.6
Q ss_pred CceEEEeeecCCCCcEEEEEEcCCCCC----CcEEEEeecCCCCceEEEeEEEEeeeeccccceEEEEEecCCCCCCEEE
Q 012311 59 PQQVHITQGDYDGKAVIISWVTPHEPG----PSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYY 134 (466)
Q Consensus 59 P~qv~lt~~~~~~~~~~V~W~t~~~~~----~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~~~~h~v~l~gL~P~T~Y~ 134 (466)
|+.+.+.... ..++.|+|..+.... .-.|+|........ ..+. .......++.|.+|+|+++|.
T Consensus 4 p~~~~~~~~~--~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~-------~~~~---~~~~~~~~~~i~~l~p~~~Y~ 71 (93)
T cd00063 4 PTNLRVTDVT--STSVTLSWTPPEDDGGPITGYVVEYREKGSGDW-------KEVE---VTPGSETSYTLTGLKPGTEYE 71 (93)
T ss_pred CCCcEEEEec--CCEEEEEECCCCCCCCcceeEEEEEeeCCCCCC-------EEee---ccCCcccEEEEccccCCCEEE
Confidence 5555554443 578999998874321 23444444321111 1111 011244678899999999999
Q ss_pred EEecc
Q 012311 135 YKIGS 139 (466)
Q Consensus 135 Yrv~~ 139 (466)
++|..
T Consensus 72 ~~v~a 76 (93)
T cd00063 72 FRVRA 76 (93)
T ss_pred EEEEE
Confidence 99954
No 112
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=93.26 E-value=1.4 Score=48.51 Aligned_cols=47 Identities=11% Similarity=0.040 Sum_probs=28.6
Q ss_pred CCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHH-cCCcEEEecccceec
Q 012311 307 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDYRISNLHYNIS 359 (466)
Q Consensus 307 ~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~-y~Vd~~~~gh~~~~~ 359 (466)
..+.-+|++.|...-... ... ..+... .. |.+ -+||.++.||.|...
T Consensus 194 ~gaDvII~LsH~G~~~d~-~~~-~~en~~---~~-l~~v~gID~Il~GHsH~~~ 241 (626)
T TIGR01390 194 KGADIIVALAHSGISADP-YQP-GAENSA---YY-LTKVPGIDAVLFGHSHAVF 241 (626)
T ss_pred cCCCEEEEEeccCcCCCc-ccc-ccchHH---HH-HhcCCCCCEEEcCCCCccC
Confidence 468889999998764321 110 111111 11 334 489999999999754
No 113
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=93.07 E-value=2.5 Score=40.81 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEeccccee
Q 012311 292 PQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNI 358 (466)
Q Consensus 292 ~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~ 358 (466)
++.+.+++++++++ .+..++||++|.-. .+. ......++++..-|.+.|+|+++.+|.|-+
T Consensus 168 ~~~~~i~~~i~~~r-~~~D~vIv~~HwG~----e~~-~~p~~~q~~~a~~lidaGaDiIiG~HpHv~ 228 (250)
T PF09587_consen 168 PGIERIKEDIREAR-KKADVVIVSLHWGI----EYE-NYPTPEQRELARALIDAGADIIIGHHPHVI 228 (250)
T ss_pred chHHHHHHHHHHHh-cCCCEEEEEeccCC----CCC-CCCCHHHHHHHHHHHHcCCCEEEeCCCCcc
Confidence 34588888888875 67899999999632 111 112234445666666789999999998754
No 114
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=92.63 E-value=0.94 Score=33.44 Aligned_cols=71 Identities=18% Similarity=0.358 Sum_probs=40.4
Q ss_pred CceEEEeeecCCCCcEEEEEEcCCCCC--CcEEEEeecCCCCceEEEeEEEEeeeeccccceEEEEEecCCCCCCEEEEE
Q 012311 59 PQQVHITQGDYDGKAVIISWVTPHEPG--PSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYK 136 (466)
Q Consensus 59 P~qv~lt~~~~~~~~~~V~W~t~~~~~--~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~~~~h~v~l~gL~P~T~Y~Yr 136 (466)
|..+++.... .+++.|+|..+.... .-.++|........ +...... .....+.+.|.+|+|+++|.++
T Consensus 4 p~~~~~~~~~--~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~i~~L~~~~~Y~v~ 73 (83)
T smart00060 4 PSNLRVTDVT--STSVTLSWEPPPDDGITGYIVGYRVEYREEG----SSWKEVN----VTPSSTSYTLTGLKPGTEYEFR 73 (83)
T ss_pred CCcEEEEEEe--CCEEEEEECCCCCCCCCccEEEEEEEEecCC----CccEEEE----ecCCccEEEEeCcCCCCEEEEE
Confidence 4446666544 348999998553221 23566655433211 0011110 0111567899999999999999
Q ss_pred ecc
Q 012311 137 IGS 139 (466)
Q Consensus 137 v~~ 139 (466)
|..
T Consensus 74 v~a 76 (83)
T smart00060 74 VRA 76 (83)
T ss_pred EEE
Confidence 864
No 115
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=92.05 E-value=2.4 Score=40.91 Aligned_cols=177 Identities=16% Similarity=0.168 Sum_probs=83.8
Q ss_pred HHHHHHh-CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceeeccCcCCcccccccccccccC
Q 012311 178 LEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPT 256 (466)
Q Consensus 178 l~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~~~~~~~~~~~f~~y~~rf~~ 256 (466)
|..+.+. ++|||+..|.++-....- ....+.++++ ..+- ..+.|||=++... ..++-.-..+.-.
T Consensus 19 Lp~L~~~~~~DfVIaNgENaa~G~Gi------t~~~~~~L~~---~GvD-viT~GNH~wdkke----i~~~i~~~~~ilR 84 (253)
T PF13277_consen 19 LPELKEEYGIDFVIANGENAAGGFGI------TPKIAEELFK---AGVD-VITMGNHIWDKKE----IFDFIDKEPRILR 84 (253)
T ss_dssp HHHHGG--G-SEEEEE-TTTTTTSS--------HHHHHHHHH---HT-S-EEE--TTTTSSTT----HHHHHHH-SSEE-
T ss_pred HHHHHhhcCCCEEEECCcccCCCCCC------CHHHHHHHHh---cCCC-EEecCcccccCcH----HHHHHhcCCCcEE
Confidence 3344444 899999999999543221 1122222222 2343 3689999886421 1111111122223
Q ss_pred CCCCC-CCCCCceEEEeeCCEEEEEEcCCC--CCCCChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHH
Q 012311 257 PHLAS-KSSSPLWYAIRRASAHIIVLSSYS--PFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGES 333 (466)
Q Consensus 257 P~~~~-~~~~~~yYsf~~g~v~fI~Lds~~--~~~~~~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~ 333 (466)
|.|-+ +..+.-|..|+.++..+-++|-.. ......-=..-+++.|++. +.+++.+||=+|.= ...
T Consensus 85 PaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l-~~~~~~iiVDFHAE-----------aTS 152 (253)
T PF13277_consen 85 PANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEEL-KEETDIIIVDFHAE-----------ATS 152 (253)
T ss_dssp -TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH------SEEEEEEE-S------------HH
T ss_pred CCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhc-cccCCEEEEEeecC-----------cHH
Confidence 54432 345567889999998888877632 1111111233344444443 25788999998842 222
Q ss_pred HHHHHHHHHHHcCCcEEEecccceecCCcccccCCCCCcEEEE-eCCCCCCC
Q 012311 334 MRAAFESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPVYIT-VGDGGNQE 384 (466)
Q Consensus 334 ~r~~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv-~G~gG~~~ 384 (466)
...+| -++.+=+|..++.-|+|=.+.+.. .-++|+-||+ +|.-|...
T Consensus 153 EK~A~-g~~lDGrvsaV~GTHTHVqTaDer---ILp~GTaYiTDvGMtG~~d 200 (253)
T PF13277_consen 153 EKQAM-GWYLDGRVSAVVGTHTHVQTADER---ILPGGTAYITDVGMTGPYD 200 (253)
T ss_dssp HHHHH-HHHHBTTBSEEEEESSSS-BS--E---E-TTS-EEES---EBEESS
T ss_pred HHHHH-HHHhCCcEEEEEeCCCCccCchhh---ccCCCCEEEecCccccCcc
Confidence 33333 366677999999999874333321 2467999997 55555544
No 116
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=91.82 E-value=6.8 Score=43.47 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=28.0
Q ss_pred CCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHH-cCCcEEEecccceec
Q 012311 307 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDYRISNLHYNIS 359 (466)
Q Consensus 307 ~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~-y~Vd~~~~gh~~~~~ 359 (466)
..+.-+|++.|..+-........++ +-.. +.+ -+||.++.||.|...
T Consensus 217 ~gaDvII~LsH~G~~~d~~~~~aen-----~~~~-l~~v~gID~Il~GHsH~~~ 264 (649)
T PRK09420 217 KGADIVVAIPHSGISADPYKAMAEN-----SVYY-LSEVPGIDAIMFGHSHAVF 264 (649)
T ss_pred cCCCEEEEEecCCcCCCCccccccc-----hhHH-HhcCCCCCEEEeCCCCccC
Confidence 4688899999987633111000111 1112 233 489999999998754
No 117
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=91.36 E-value=0.5 Score=42.01 Aligned_cols=65 Identities=23% Similarity=0.254 Sum_probs=40.1
Q ss_pred EEEEccCCCCCCc--------------HHHHHHHHHh-C-CCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCC
Q 012311 162 FGIIGDLGQTYNS--------------LSTLEHYMES-G-AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP 225 (466)
Q Consensus 162 f~v~GD~g~~~~~--------------~~tl~~~~~~-~-~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P 225 (466)
+..+||++.+... ...+..+.+. . -|.+.|+||++..-+. -....+.++.+-..+
T Consensus 6 myfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~--------~~~a~~IlerLnGrk- 76 (186)
T COG4186 6 MYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANR--------ERAAGLILERLNGRK- 76 (186)
T ss_pred EEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccch--------hhHHHHHHHHcCCcE-
Confidence 5567888765421 1223444443 4 4789999999953221 144566667665444
Q ss_pred eEEcCCCceee
Q 012311 226 WIWSAGNHEIE 236 (466)
Q Consensus 226 ~~~~~GNHE~~ 236 (466)
..++||||-.
T Consensus 77 -hlv~GNhDk~ 86 (186)
T COG4186 77 -HLVPGNHDKC 86 (186)
T ss_pred -EEeeCCCCCC
Confidence 8899999953
No 118
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=91.36 E-value=0.34 Score=48.50 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=37.9
Q ss_pred EEEEEccCCCCCCcHHHHHHHHHh----CCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCC--eEEcCCCce
Q 012311 161 KFGIIGDLGQTYNSLSTLEHYMES----GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP--WIWSAGNHE 234 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~tl~~~~~~----~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P--~~~~~GNHE 234 (466)
+++++||+|.... .+.++.+. ..+-++++||++..... + -+-...+..+....| ++.+.||||
T Consensus 44 ~i~ViGDIHG~~~---dL~~l~~~~g~~~~~~ylFLGDyVDRG~~-s-------~Evi~lL~~lki~~p~~v~lLRGNHE 112 (305)
T cd07416 44 PVTVCGDIHGQFY---DLLKLFEVGGSPANTRYLFLGDYVDRGYF-S-------IECVLYLWALKILYPKTLFLLRGNHE 112 (305)
T ss_pred CEEEEEeCCCCHH---HHHHHHHhcCCCCCceEEEECCccCCCCC-h-------HHHHHHHHHHHhhcCCCEEEEeCCCc
Confidence 5889999997543 23333332 34789999999943211 1 112222223322334 788999999
Q ss_pred ee
Q 012311 235 IE 236 (466)
Q Consensus 235 ~~ 236 (466)
..
T Consensus 113 ~~ 114 (305)
T cd07416 113 CR 114 (305)
T ss_pred HH
Confidence 75
No 119
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=91.13 E-value=0.36 Score=48.58 Aligned_cols=65 Identities=20% Similarity=0.138 Sum_probs=37.3
Q ss_pred EEEEEccCCCCCCcHHHHHHHHHh---C--CCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCC--eEEcCCCc
Q 012311 161 KFGIIGDLGQTYNSLSTLEHYMES---G--AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP--WIWSAGNH 233 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~tl~~~~~~---~--~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P--~~~~~GNH 233 (466)
++.|+||+|.... .+.++.+. . .+-+|++||++..... + -+. ...+-.+....| ++.+.|||
T Consensus 52 ~~~vvGDiHG~~~---dL~~il~~~g~~~~~~~~lFLGDyVDRG~~-s------~Ev-l~ll~~lk~~~p~~v~llRGNH 120 (321)
T cd07420 52 QVTICGDLHGKLD---DLFLIFYKNGLPSPENPYVFNGDFVDRGKR-S------IEI-LIILFAFFLVYPNEVHLNRGNH 120 (321)
T ss_pred CeEEEEeCCCCHH---HHHHHHHHcCCCCccceEEEeccccCCCCC-c------HHH-HHHHHHHhhcCCCcEEEecCch
Confidence 6789999987543 33333332 2 2579999999953221 1 111 222222221223 78899999
Q ss_pred eee
Q 012311 234 EIE 236 (466)
Q Consensus 234 E~~ 236 (466)
|..
T Consensus 121 E~~ 123 (321)
T cd07420 121 EDH 123 (321)
T ss_pred hhh
Confidence 975
No 120
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=90.61 E-value=0.46 Score=46.69 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=37.8
Q ss_pred EEEEEccCCCCCCcHHHHHHHHH----hCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhc--CCeEEcCCCce
Q 012311 161 KFGIIGDLGQTYNSLSTLEHYME----SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNHE 234 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~tl~~~~~----~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~--~P~~~~~GNHE 234 (466)
+++++||.|.... .+.++.+ ...+-++++||++.. |... -+-...+..+.-. --++.+.||||
T Consensus 29 ~i~vvGDiHG~~~---~l~~ll~~~~~~~~~~~vfLGD~VDr-G~~s-------~e~l~~l~~lk~~~p~~v~llrGNHE 97 (271)
T smart00156 29 PVTVCGDIHGQFD---DLLRLFDLNGPPPDTNYVFLGDYVDR-GPFS-------IEVILLLFALKILYPNRVVLLRGNHE 97 (271)
T ss_pred CEEEEEeCcCCHH---HHHHHHHHcCCCCCceEEEeCCccCC-CCCh-------HHHHHHHHHHHhcCCCCEEEEecccc
Confidence 5889999986543 3333332 255789999999943 2211 1112222222222 24789999999
Q ss_pred ee
Q 012311 235 IE 236 (466)
Q Consensus 235 ~~ 236 (466)
..
T Consensus 98 ~~ 99 (271)
T smart00156 98 SR 99 (271)
T ss_pred HH
Confidence 75
No 121
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=89.81 E-value=1.8 Score=41.50 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=34.1
Q ss_pred HHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCcEEEeccccee
Q 012311 297 LREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDYRISNLHYNI 358 (466)
Q Consensus 297 L~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd~~~~gh~~~~ 358 (466)
+++++++++ .+...+||+.|--.-.. + .....+..+..-|.+.|||+++.+|.|-+
T Consensus 162 i~~~i~~lr-~~~D~vIv~~H~G~e~~---~--~p~~~~~~~A~~l~~~G~DvIiG~H~H~~ 217 (239)
T smart00854 162 ILADIARAR-KKADVVIVSLHWGVEYQ---Y--EPTDEQRELAHALIDAGADVVIGHHPHVL 217 (239)
T ss_pred HHHHHHHHh-ccCCEEEEEecCccccC---C--CCCHHHHHHHHHHHHcCCCEEEcCCCCcC
Confidence 444444443 35889999999765211 1 11122334555555589999999998854
No 122
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=89.57 E-value=0.53 Score=46.65 Aligned_cols=21 Identities=5% Similarity=-0.020 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCcEEEeccc
Q 012311 335 RAAFESWFVRYKVDYRISNLH 355 (466)
Q Consensus 335 r~~l~~ll~~y~Vd~~~~gh~ 355 (466)
.++.+..|++.+++..+.+|.
T Consensus 214 ~~~~~~Fl~~n~l~~iiR~He 234 (285)
T cd07415 214 QDVVEEFNHNNGLTLICRAHQ 234 (285)
T ss_pred HHHHHHHHHHCCCeEEEEcCc
Confidence 468889999999999999995
No 123
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=89.08 E-value=0.62 Score=46.35 Aligned_cols=21 Identities=5% Similarity=0.143 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCcEEEeccc
Q 012311 335 RAAFESWFVRYKVDYRISNLH 355 (466)
Q Consensus 335 r~~l~~ll~~y~Vd~~~~gh~ 355 (466)
.++++..|++.|++..+-+|.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He 242 (293)
T cd07414 222 KDVVAKFLNKHDLDLICRAHQ 242 (293)
T ss_pred HHHHHHHHHHcCCeEEEECCc
Confidence 468889999999999999995
No 124
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=88.18 E-value=0.78 Score=45.85 Aligned_cols=21 Identities=0% Similarity=-0.107 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCcEEEeccc
Q 012311 335 RAAFESWFVRYKVDYRISNLH 355 (466)
Q Consensus 335 r~~l~~ll~~y~Vd~~~~gh~ 355 (466)
.++++..|++.+++..+-+|.
T Consensus 215 ~~~~~~Fl~~n~l~~iiR~He 235 (303)
T PTZ00239 215 AKVTKEFCRLNDLTLICRAHQ 235 (303)
T ss_pred HHHHHHHHHHCCCcEEEEcCh
Confidence 468889999999999999995
No 125
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=88.18 E-value=0.81 Score=46.99 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCcEEEeccc
Q 012311 335 RAAFESWFVRYKVDYRISNLH 355 (466)
Q Consensus 335 r~~l~~ll~~y~Vd~~~~gh~ 355 (466)
.++++..|+++++++.+-+|.
T Consensus 273 ~~~~~~FL~~n~l~~IIRsHe 293 (377)
T cd07418 273 PDCTEEFLEKNNLKLIIRSHE 293 (377)
T ss_pred HHHHHHHHHHcCCcEEEECCC
Confidence 468889999999999999996
No 126
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=87.82 E-value=0.47 Score=42.35 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=39.1
Q ss_pred EEEccCCCCCCc-HHHHHHHHHh--CCCEEEEcccccccccccccccchhHHHHHHHHHH-HhhcCCeEEcCCCce
Q 012311 163 GIIGDLGQTYNS-LSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVER-SAAYQPWIWSAGNHE 234 (466)
Q Consensus 163 ~v~GD~g~~~~~-~~tl~~~~~~--~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~-l~~~~P~~~~~GNHE 234 (466)
+|+||.+..-.. ...++.+.+. +.|++|.+||+.-.+.. . +.|...+.. ....+|.+.+-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~-----~---~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDED-----D---EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccc-----h---hhHHHHhcCCccCCCCEEEECCCCC
Confidence 367887654321 2334443332 78999999999954321 1 233333332 235789999999998
No 127
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=87.02 E-value=0.94 Score=45.59 Aligned_cols=21 Identities=5% Similarity=0.143 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCcEEEeccc
Q 012311 335 RAAFESWFVRYKVDYRISNLH 355 (466)
Q Consensus 335 r~~l~~ll~~y~Vd~~~~gh~ 355 (466)
.++++..|+++++++.+-+|.
T Consensus 231 ~~~~~~Fl~~n~l~~IiR~Hq 251 (320)
T PTZ00480 231 QEIVQVFLKKHELDLICRAHQ 251 (320)
T ss_pred HHHHHHHHHhCCCcEEEEcCc
Confidence 568889999999999999995
No 128
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=86.38 E-value=1.1 Score=45.01 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCcEEEeccc
Q 012311 335 RAAFESWFVRYKVDYRISNLH 355 (466)
Q Consensus 335 r~~l~~ll~~y~Vd~~~~gh~ 355 (466)
.++++..|++.+++..+.+|.
T Consensus 233 ~~~~~~Fl~~n~l~~iiR~He 253 (316)
T cd07417 233 PDVTKRFLEENNLEYIIRSHE 253 (316)
T ss_pred HHHHHHHHHHcCCcEEEECCc
Confidence 467889999999999999995
No 129
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=85.98 E-value=0.86 Score=45.34 Aligned_cols=21 Identities=5% Similarity=0.113 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCcEEEeccc
Q 012311 335 RAAFESWFVRYKVDYRISNLH 355 (466)
Q Consensus 335 r~~l~~ll~~y~Vd~~~~gh~ 355 (466)
.++.+..|++.+++..+-+|.
T Consensus 224 ~~~~~~Fl~~n~l~~iiR~Hq 244 (294)
T PTZ00244 224 EDIVNDFLDMVDMDLIVRAHQ 244 (294)
T ss_pred HHHHHHHHHHcCCcEEEEcCc
Confidence 467889999999999999995
No 130
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=85.91 E-value=1.4 Score=44.14 Aligned_cols=21 Identities=5% Similarity=0.063 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCcEEEeccc
Q 012311 335 RAAFESWFVRYKVDYRISNLH 355 (466)
Q Consensus 335 r~~l~~ll~~y~Vd~~~~gh~ 355 (466)
.++++..|+++|++..+-||.
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 468889999999999999996
No 131
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=85.79 E-value=3.4 Score=47.41 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=47.8
Q ss_pred CCCceEEEeeecCCCCcEEEEEEcCCC----CCCcEEEEeecCCCCceEEEeEEEEeeeeccccceEEEEEecCCCCCCE
Q 012311 57 NSPQQVHITQGDYDGKAVIISWVTPHE----PGPSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTK 132 (466)
Q Consensus 57 ~~P~qv~lt~~~~~~~~~~V~W~t~~~----~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~~~~h~v~l~gL~P~T~ 132 (466)
.+|+.+++...+ .++|.|+|..+.. ...-.|+|+...+.. +...... ..+-.-.++|+||+|+|.
T Consensus 821 ~ap~~~~~~~~s--~s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~-----~~~~~~~----i~~~~~~~~ltgL~~~T~ 889 (1051)
T KOG3513|consen 821 VAPTKLSAKPLS--SSEVNLSWKPPLWDNGKLTGYEVKYWKINEKE-----GSLSRVQ----IAGNRTSWRLTGLEPNTK 889 (1051)
T ss_pred CCCccceeeccc--CceEEEEecCcCccCCccceeEEEEEEcCCCc-----cccccee----ecCCcceEeeeCCCCCce
Confidence 468888776554 6899999965532 224589999887653 1111111 123334579999999999
Q ss_pred EEEEecc
Q 012311 133 YYYKIGS 139 (466)
Q Consensus 133 Y~Yrv~~ 139 (466)
|+..|..
T Consensus 890 Y~~~vrA 896 (1051)
T KOG3513|consen 890 YRFYVRA 896 (1051)
T ss_pred EEEEEEE
Confidence 9999865
No 132
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=83.69 E-value=3.1 Score=43.68 Aligned_cols=80 Identities=15% Similarity=0.281 Sum_probs=50.3
Q ss_pred CCCeEEEEEccCCCCCCcH--HHHHHHHH---------hCCCEEEEcccccccccccc--------cccchhHHHHHHHH
Q 012311 157 DASYKFGIIGDLGQTYNSL--STLEHYME---------SGAQTVLFLGDLSYADRYQF--------IDVGVRWDSWGRFV 217 (466)
Q Consensus 157 ~~~~~f~v~GD~g~~~~~~--~tl~~~~~---------~~~dfvl~~GDl~Y~~~~~~--------~d~~~~wd~~~~~~ 217 (466)
...++.++++|.+.+.... .......+ .+...++.+||.+-.-+... .|...+++++.+++
T Consensus 223 ~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L 302 (481)
T COG1311 223 DERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFL 302 (481)
T ss_pred CcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHH
Confidence 3578899999999864211 11111111 13478999999995332211 12233556666666
Q ss_pred HHHhhcCCeEEcCCCceee
Q 012311 218 ERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 218 ~~l~~~~P~~~~~GNHE~~ 236 (466)
...-..+-+++.|||||..
T Consensus 303 ~~vp~~I~v~i~PGnhDa~ 321 (481)
T COG1311 303 DQVPEHIKVFIMPGNHDAV 321 (481)
T ss_pred hhCCCCceEEEecCCCCcc
Confidence 6666778899999999975
No 133
>PRK10301 hypothetical protein; Provisional
Probab=82.17 E-value=24 Score=30.28 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=18.8
Q ss_pred eEEEEEec-CCCCCC-EEEEEeccC---CccceEEEE
Q 012311 118 YIHQCLVD-GLEYDT-KYYYKIGSG---DSSREFWFQ 149 (466)
Q Consensus 118 ~~h~v~l~-gL~P~T-~Y~Yrv~~~---~~s~~~~F~ 149 (466)
....+.+. +|.||+ +-.||+-+. ..+..++|+
T Consensus 86 ~~~~v~l~~~L~~G~YtV~Wrvvs~DGH~~~G~~~F~ 122 (124)
T PRK10301 86 KQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYTFS 122 (124)
T ss_pred cEEEEECCCCCCCccEEEEEEEEecCCCccCCeEEEE
Confidence 44467775 699996 556676543 134455553
No 134
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=80.49 E-value=6.8 Score=45.48 Aligned_cols=95 Identities=15% Similarity=0.255 Sum_probs=52.6
Q ss_pred EeeecCCCCcEEEEEEcCCCCCCcEEEEeecCCCCceEEEeEEEEeeeeccccceEEEEEecCCCCCCEEEEEecc----
Q 012311 64 ITQGDYDGKAVIISWVTPHEPGPSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYKIGS---- 139 (466)
Q Consensus 64 lt~~~~~~~~~~V~W~t~~~~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~~~~h~v~l~gL~P~T~Y~Yrv~~---- 139 (466)
|........++.|.|..+.-.+.....|..--... -.|....+ ..--++.+|.||+|.|.|.|||..
T Consensus 527 ~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~---~~~~~~~~------~~n~~e~ti~gL~k~TeY~~~vvA~N~~ 597 (1381)
T KOG4221|consen 527 LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED---DTGKELRV------ENNATEYTINGLEKYTEYSIRVVAYNSA 597 (1381)
T ss_pred ccccccCcceEEEEecCCCCCCCCceEEEEEEEcC---CCCceEEE------ecCccEEEeecCCCccceEEEEEEecCC
Confidence 44444456899999999864444444443211000 00111111 112345688899999999999954
Q ss_pred --CCccceEEEECCCCC-C-CCCCeEEEEEcc
Q 012311 140 --GDSSREFWFQTPPKI-D-PDASYKFGIIGD 167 (466)
Q Consensus 140 --~~~s~~~~F~T~p~~-g-~~~~~~f~v~GD 167 (466)
+..|...+|+|+-.. + +...++..+..-
T Consensus 598 G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sS 629 (1381)
T KOG4221|consen 598 GSGVSSADITVRTLSDVPSAPPQNLSLEVVSS 629 (1381)
T ss_pred CCCCCCCceEEEeccCCCCCCCcceEEEecCC
Confidence 235677788876321 1 123455555543
No 135
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=78.87 E-value=8.1 Score=41.60 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHc-CCcE-EEecccc
Q 012311 291 TPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVDY-RISNLHY 356 (466)
Q Consensus 291 ~~Q~~WL~~~L~~~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y-~Vd~-~~~gh~~ 356 (466)
-.|.+|-.+.++. .+..-+|+++|.|.-.. .+.+. .+..+...+ +++. ++.||.|
T Consensus 211 i~~~~~~~~m~~~---~~idlii~lgH~~~~~~-----~e~~~---~~~~ir~~~p~t~IqviGGHsh 267 (602)
T KOG4419|consen 211 ITQSEWEQDMVNT---TDIDLIIALGHSPVRDD-----DEWKS---LHAEIRKVHPNTPIQVIGGHSH 267 (602)
T ss_pred HhccchHHHHhhc---cCccEEEEecccccccc-----hhhhh---HHHHHhhhCCCCceEEECchhh
Confidence 4578888887776 67788999999886321 12111 333444444 6776 8889865
No 136
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=76.65 E-value=12 Score=31.57 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=17.1
Q ss_pred ChhhhHHHHHHHHHHHHHhhhhcc
Q 012311 1 MEKMRLLLHLALTTAIVLLSDVNG 24 (466)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (466)
+.++|.+++++|.+|+++++.+..
T Consensus 3 sr~~Ra~Ls~~ln~LAL~~S~tA~ 26 (118)
T PF07803_consen 3 SRRQRALLSLILNLLALAFSTTAL 26 (118)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 346787888888877777776544
No 137
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=76.60 E-value=20 Score=29.55 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=45.7
Q ss_pred CCceEEEeeecCCCCcEEEEEEcCCCCC---CcEEEEeecCCCCceEEEeEEEEeeeeccccceEEEEEecCCC--CCCE
Q 012311 58 SPQQVHITQGDYDGKAVIISWVTPHEPG---PSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLE--YDTK 132 (466)
Q Consensus 58 ~P~qv~lt~~~~~~~~~~V~W~t~~~~~---~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~~~~h~v~l~gL~--P~T~ 132 (466)
+|+.|.+.... -..++.|.-+.... .-.|+|....+..+..+.+-... ..+++.|+... +...
T Consensus 24 ~P~nv~~~s~n---f~~iL~W~~~~~~~~~~~ytVq~~~~~~~~W~~v~~C~~i---------~~~~Cdlt~~~~~~~~~ 91 (107)
T PF01108_consen 24 APQNVTVDSVN---FKHILRWDPGPGSPPNVTYTVQYKKYGSSSWKDVPGCQNI---------TETSCDLTDETSDPSES 91 (107)
T ss_dssp SCEEEEEEEET---TEEEEEEEESTTSSSTEEEEEEEEESSTSCEEEECCEEEE---------SSSEEECTTCCTTTTSE
T ss_pred CCCeeEEEEEC---CceEEEeCCCCCCCCCeEEEEEEEecCCcceeeccceecc---------cccceeCcchhhcCcCC
Confidence 48888888764 46899999853322 24788985554455555332111 11567887754 7889
Q ss_pred EEEEeccC
Q 012311 133 YYYKIGSG 140 (466)
Q Consensus 133 Y~Yrv~~~ 140 (466)
|+.||...
T Consensus 92 Y~~rV~A~ 99 (107)
T PF01108_consen 92 YYARVRAE 99 (107)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99999763
No 138
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=73.37 E-value=17 Score=29.64 Aligned_cols=66 Identities=17% Similarity=0.280 Sum_probs=38.4
Q ss_pred CCceEEEeeecCCCCcEEEEEEcCCCC---C-------------CcEEEEeecCCCCceEEEeEEEEeeeeccccceEEE
Q 012311 58 SPQQVHITQGDYDGKAVIISWVTPHEP---G-------------PSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQ 121 (466)
Q Consensus 58 ~P~qv~lt~~~~~~~~~~V~W~t~~~~---~-------------~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~~~~h~ 121 (466)
+|+ |+|+..+ +++.|.+.-+..+ + .-.|.|+..++.. .. ..+ ..-.-.
T Consensus 5 PP~-v~v~~~~---~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~--~~----~~~------~~~~~~ 68 (106)
T PF09294_consen 5 PPS-VNVSSCG---GSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNE--KK----KEI------ETKNSS 68 (106)
T ss_dssp SSE-EEEEEET---TEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSC--EE----EEE------ESSSEE
T ss_pred CCE-EEEEECC---CEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCcc--ce----EEE------eecCCE
Confidence 465 8886653 6899998877411 0 1246666666541 11 111 111123
Q ss_pred EEecCCCCCCEEEEEecc
Q 012311 122 CLVDGLEYDTKYYYKIGS 139 (466)
Q Consensus 122 v~l~gL~P~T~Y~Yrv~~ 139 (466)
++|.+|+|+|.|.-+|..
T Consensus 69 ~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 69 VTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEEES--TTSEEEEEEEE
T ss_pred EEEeCCCCCCCEEEEEEE
Confidence 689999999999999976
No 139
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=73.23 E-value=7.1 Score=38.11 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=40.7
Q ss_pred CCeEEEEEccCCCCCCcHHHHHHHHHh-CCCEEEEcccccccccccccccchhH-HHHHHHHHHHhhcCCe---EEcCCC
Q 012311 158 ASYKFGIIGDLGQTYNSLSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRW-DSWGRFVERSAAYQPW---IWSAGN 232 (466)
Q Consensus 158 ~~~~f~v~GD~g~~~~~~~tl~~~~~~-~~dfvl~~GDl~Y~~~~~~~d~~~~w-d~~~~~~~~l~~~~P~---~~~~GN 232 (466)
.-.+|+.++|.|.-.. .+... +.|+++++||...- + +.+| ..|.+ ...+.|. +++.||
T Consensus 60 ~~~r~VcisdtH~~~~------~i~~~p~gDvlihagdfT~~-g------~~~ev~~fn~----~~gslph~yKIVIaGN 122 (305)
T KOG3947|consen 60 GYARFVCISDTHELTF------DINDIPDGDVLIHAGDFTNL-G------LPEEVIKFNE----WLGSLPHEYKIVIAGN 122 (305)
T ss_pred CceEEEEecCcccccC------ccccCCCCceEEeccCCccc-c------CHHHHHhhhH----HhccCcceeeEEEeec
Confidence 4679999999986432 12222 67999999999942 1 2222 22333 2334453 689999
Q ss_pred ceeecc
Q 012311 233 HEIEYM 238 (466)
Q Consensus 233 HE~~~~ 238 (466)
||....
T Consensus 123 HELtFd 128 (305)
T KOG3947|consen 123 HELTFD 128 (305)
T ss_pred cceeec
Confidence 999765
No 140
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.34 E-value=41 Score=29.92 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCcEEEecccceecCCcccccCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCC
Q 012311 337 AFESWFVRYKVDYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRT 416 (466)
Q Consensus 337 ~l~~ll~~y~Vd~~~~gh~~~~~~~~~~~~~~~~g~vyiv~G~gG~~~~~~~~~~~~~p~~sa~~~~~~G~~~l~v~n~t 416 (466)
.|.-|-.+.+||..+.||+|+... -..+|-.||--|++-.... ..+.. .....|..++|...+
T Consensus 98 sL~~LaRqldvDILl~G~Th~f~A------ye~eg~ffvnPGSaTGAfn----~~~t~-------~~~PSFvLmDiqg~~ 160 (183)
T KOG3325|consen 98 SLALLARQLDVDILLTGHTHKFEA------YEHEGKFFVNPGSATGAFN----VSDTD-------IIVPSFVLMDIQGST 160 (183)
T ss_pred HHHHHHHhcCCcEEEeCCceeEEE------EEeCCcEEeCCCcccCCCc----ccccC-------CCCCceEEEEecCCE
Confidence 556677788999999999986431 1345777887676533211 11111 134568999997665
Q ss_pred eEEEEEEEcCCCceeeeeeEEEEe
Q 012311 417 HAFYHWNRNDDGKKVATDSFILHN 440 (466)
Q Consensus 417 ~l~~~~~~~~dg~~~~~D~~~i~k 440 (466)
..++-| +--||++ ..|.+...|
T Consensus 161 ~v~YvY-~lidgeV-kVdki~ykK 182 (183)
T KOG3325|consen 161 VVTYVY-RLIDGEV-KVDKIEYKK 182 (183)
T ss_pred EEEEEe-eeeCCcE-EEEEEEecC
Confidence 444433 4468886 578776654
No 141
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=67.10 E-value=5.2 Score=32.75 Aligned_cols=9 Identities=33% Similarity=0.390 Sum_probs=5.9
Q ss_pred ChhhhHHHH
Q 012311 1 MEKMRLLLH 9 (466)
Q Consensus 1 ~~~~~~~~~ 9 (466)
|.||++|+.
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 787776543
No 142
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=66.33 E-value=19 Score=40.43 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=69.4
Q ss_pred CCceEEEeeecCCCCcEEEEEEcCCCCC-----CcEEEEeecCCCC-----ceEEEeEEE--Eeeee--c--cccceEEE
Q 012311 58 SPQQVHITQGDYDGKAVIISWVTPHEPG-----PSTVSYGTSADKF-----DFTAEGTVN--NYTFY--K--YKSGYIHQ 121 (466)
Q Consensus 58 ~P~qv~lt~~~~~~~~~~V~W~t~~~~~-----~~~V~yg~~~~~~-----~~~a~g~~~--~y~~~--~--~~~~~~h~ 121 (466)
.+.-++++......+++.++|..-..+. .-.+.|...+... .+.|.|... ...-. + ..++..-.
T Consensus 488 e~~~l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~ 567 (1025)
T KOG4258|consen 488 EDLVLQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPG 567 (1025)
T ss_pred ccceeeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccc
Confidence 4566666665556789999998875331 2367777777421 123333221 11100 0 11223337
Q ss_pred EEecCCCCCCEEEEEeccC----------CccceEEEECCCCCCCCCCeEEEEEccCC
Q 012311 122 CLVDGLEYDTKYYYKIGSG----------DSSREFWFQTPPKIDPDASYKFGIIGDLG 169 (466)
Q Consensus 122 v~l~gL~P~T~Y~Yrv~~~----------~~s~~~~F~T~p~~g~~~~~~f~v~GD~g 169 (466)
..+.||+|.|.|.|-|..- +.|++.-|+|.|.. ++-|+..+...+..
T Consensus 568 ~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~-PspPl~~ls~snsS 624 (1025)
T KOG4258|consen 568 FLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDI-PSPPLDVLSKSNSS 624 (1025)
T ss_pred eehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCC-CCCcchhhhccCcc
Confidence 8999999999999998652 46899999999864 44577777666643
No 143
>cd02850 Cellulase_N_term Cellulase N-terminus domain. Cellulases are O-glycosyl hydrolases (GHs) that hydrolyze beta 1-4 glucosidic bonds in cellulose. They are usually catagorized into either exoglucanases which sequentially release sugar units from the cellulose chain and endoglucanases which also attack the chain internally. The N-terminus of cellulase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=66.19 E-value=56 Score=25.94 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=20.4
Q ss_pred ceEEEEEecCC-CCCCEEEEEeccC
Q 012311 117 GYIHQCLVDGL-EYDTKYYYKIGSG 140 (466)
Q Consensus 117 ~~~h~v~l~gL-~P~T~Y~Yrv~~~ 140 (466)
..++.+.++.| +|||+|+-+++..
T Consensus 55 ~~~~~~DFS~~~~pG~~Y~l~~~~~ 79 (86)
T cd02850 55 DNVHIIDFSSYRTEGTGYYLSVDGE 79 (86)
T ss_pred CeEEEEEcCCCcCCCCeEEEEECCc
Confidence 47899999999 7999998888763
No 144
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=65.18 E-value=4.8 Score=37.51 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=40.0
Q ss_pred EEEEccCCCCCC--cHHHHHHHH-----HhCCCEEEEccccccccccccc------ccchhHHHH---HHHHHHHhhcCC
Q 012311 162 FGIIGDLGQTYN--SLSTLEHYM-----ESGAQTVLFLGDLSYADRYQFI------DVGVRWDSW---GRFVERSAAYQP 225 (466)
Q Consensus 162 f~v~GD~g~~~~--~~~tl~~~~-----~~~~dfvl~~GDl~Y~~~~~~~------d~~~~wd~~---~~~~~~l~~~~P 225 (466)
|++++|...+.+ ..+.+..+. +.+|+.+|++|+++........ .+....+.. .+.++.+...++
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 578888887743 234455544 3379999999999975332110 001111111 122233446789
Q ss_pred eEEcCCCceeecc
Q 012311 226 WIWSAGNHEIEYM 238 (466)
Q Consensus 226 ~~~~~GNHE~~~~ 238 (466)
++.+||+||....
T Consensus 81 vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 81 VVLVPGPNDPTSS 93 (209)
T ss_dssp EEEE--TTCTT-S
T ss_pred EEEeCCCcccccc
Confidence 9999999997643
No 145
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=58.28 E-value=48 Score=38.48 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=57.5
Q ss_pred ccCCCCCCCceEEEeeecCCCCcEEEEEEcCCCCCCcEEEEe----ecCCCCceEEEeEEEEeeeeccccceEEEEEecC
Q 012311 51 AVPKGHNSPQQVHITQGDYDGKAVIISWVTPHEPGPSTVSYG----TSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDG 126 (466)
Q Consensus 51 ~~~~~~~~P~qv~lt~~~~~~~~~~V~W~t~~~~~~~~V~yg----~~~~~~~~~a~g~~~~y~~~~~~~~~~h~v~l~g 126 (466)
+.|+ .+|.+|++.--. .+.+.++|.-...-.+++..|- +.....|+.+. +.-. -..+- +.+++-+
T Consensus 612 ~gpP--gpP~~v~~~~i~--~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~-~vp~-----~~~~~-~sa~vv~ 680 (1051)
T KOG3513|consen 612 RGPP--GPPPDVHVDDIS--DTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVT-TVPG-----NITGD-ESATVVN 680 (1051)
T ss_pred ecCC--CCCCceeEeeec--cceEEEEeecCCCCCCCceEEeEEecCCCCCcceEee-ECCC-----cccCc-cceeEEc
Confidence 4444 468888886443 4799999998865445555554 33333455554 3221 12233 5688999
Q ss_pred CCCCCEEEEEeccC------Ccc-ceEEEECCCCC
Q 012311 127 LEYDTKYYYKIGSG------DSS-REFWFQTPPKI 154 (466)
Q Consensus 127 L~P~T~Y~Yrv~~~------~~s-~~~~F~T~p~~ 154 (466)
|.|-..|.+||..- .-| +.-.-+|.++.
T Consensus 681 L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~ 715 (1051)
T KOG3513|consen 681 LSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAA 715 (1051)
T ss_pred cCCCcceEEEEEEEcccccCCCCCCccceecCCCC
Confidence 99999999999652 112 22356787764
No 146
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=54.75 E-value=37 Score=33.85 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=16.9
Q ss_pred eEEEEEecCCCCCCEEEEEec
Q 012311 118 YIHQCLVDGLEYDTKYYYKIG 138 (466)
Q Consensus 118 ~~h~v~l~gL~P~T~Y~Yrv~ 138 (466)
.--+.+|.+|+|||+||+-|-
T Consensus 13 ~~t~~t~~~L~p~t~YyfdVF 33 (300)
T PF10179_consen 13 QKTNQTLSGLKPDTTYYFDVF 33 (300)
T ss_pred CCceEEeccCCCCCeEEEEEE
Confidence 334568899999999999983
No 147
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=48.52 E-value=18 Score=32.28 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=21.8
Q ss_pred EEecCCCCCCEEEEE--eccCC---ccceEEEECCCCC
Q 012311 122 CLVDGLEYDTKYYYK--IGSGD---SSREFWFQTPPKI 154 (466)
Q Consensus 122 v~l~gL~P~T~Y~Yr--v~~~~---~s~~~~F~T~p~~ 154 (466)
-.+++|.|||+|+.+ |..+. .|.+..-.|.|..
T Consensus 104 YqVtNL~pGTkY~isY~VtkgtstESS~~i~msT~n~~ 141 (184)
T PF07353_consen 104 YQVTNLQPGTKYYISYLVTKGTSTESSNEIPMSTLNRK 141 (184)
T ss_pred EEeeccCCCcEEEEEEEEecCccceecceecccccccc
Confidence 367899999999854 65552 3445555666653
No 148
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=42.87 E-value=98 Score=35.04 Aligned_cols=97 Identities=18% Similarity=0.349 Sum_probs=58.5
Q ss_pred cccCCCCCccCcCCCCcccccCCCCCCCceEEEeeecCCCCcEEEEEEcCCCCC-CcEEEEeecCCC-----CceEEEeE
Q 012311 32 KFIRTEWPSIDIPLDNEAFAVPKGHNSPQQVHITQGDYDGKAVIISWVTPHEPG-PSTVSYGTSADK-----FDFTAEGT 105 (466)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~~~~~~P~qv~lt~~~~~~~~~~V~W~t~~~~~-~~~V~yg~~~~~-----~~~~a~g~ 105 (466)
.|.|...-+.+||=.. | +.+|..+.... .++++.+.|.-+.+.+ ..-|.|...=.. ..-...|.
T Consensus 315 gyyRA~~Dp~~mpCT~-----P--PSaP~nlis~v---n~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~ 384 (996)
T KOG0196|consen 315 GYYRADSDPPSMPCTR-----P--PSAPRNLISNV---NGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGD 384 (996)
T ss_pred CcccCCCCCCCCCCCC-----C--CCccceeeeec---ccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCC
Confidence 4677766666677655 2 25688775553 3689999999886553 566666542111 11122333
Q ss_pred EEEeeeeccccceEEEEEecCCCCCCEEEEEecc
Q 012311 106 VNNYTFYKYKSGYIHQCLVDGLEYDTKYYYKIGS 139 (466)
Q Consensus 106 ~~~y~~~~~~~~~~h~v~l~gL~P~T~Y~Yrv~~ 139 (466)
...|.-. ...-..-.|.+.||.|-|.|.+.|..
T Consensus 385 ~V~f~P~-q~gLt~~~V~v~~L~ah~~YTFeV~A 417 (996)
T KOG0196|consen 385 NVRFTPR-QRGLTETSVTVSDLLAHTNYTFEVEA 417 (996)
T ss_pred CceECCC-CCCcccceEEEeccccccccEEEEEE
Confidence 3344311 01113446899999999999999965
No 149
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=42.18 E-value=37 Score=32.77 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=34.1
Q ss_pred EEEEccCCCCCCcHHHHHHHHHhCC-CEEEEcccccccccccccccchhHHHHHHHHHHHhhcCC--eEEcCCCceee
Q 012311 162 FGIIGDLGQTYNSLSTLEHYMESGA-QTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP--WIWSAGNHEIE 236 (466)
Q Consensus 162 f~v~GD~g~~~~~~~tl~~~~~~~~-dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P--~~~~~GNHE~~ 236 (466)
+.+.||+|......-.+=++...-| .=-|++||++...-+ .-+.|.-.+ .+....| +..+.||||..
T Consensus 45 vtvcGDIHGQf~Dllelf~igG~~~~t~YLFLGDyVDRG~~-------SvEt~lLLl-~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 45 VTVCGDIHGQFYDLLELFRIGGDVPETNYLFLGDYVDRGYY-------SVETFLLLL-ALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred cEEeecccchHHHHHHHHHhCCCCCCCceEeecchhccccc-------hHHHHHHHH-HHhhcCcceeEEeeccchhh
Confidence 4568999864321111112222222 236899999953221 113333222 2222334 67899999976
No 150
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=41.24 E-value=1.9e+02 Score=28.86 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=16.5
Q ss_pred EEEecCCCCCCEEEEEeccC
Q 012311 121 QCLVDGLEYDTKYYYKIGSG 140 (466)
Q Consensus 121 ~v~l~gL~P~T~Y~Yrv~~~ 140 (466)
..+|.||+||+.|-..|...
T Consensus 261 tetI~~L~PG~~Yl~dV~~~ 280 (300)
T PF10179_consen 261 TETIKGLKPGTTYLFDVYVN 280 (300)
T ss_pred eeecccCCCCcEEEEEEEEe
Confidence 34799999999998888653
No 151
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=41.16 E-value=32 Score=34.86 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCcEEEeccc
Q 012311 335 RAAFESWFVRYKVDYRISNLH 355 (466)
Q Consensus 335 r~~l~~ll~~y~Vd~~~~gh~ 355 (466)
...++.++.+.++|++..+|.
T Consensus 233 ~~~v~~f~~~~~ldlivRaHq 253 (331)
T KOG0374|consen 233 PAVVEDFCKKLDLDLIVRAHQ 253 (331)
T ss_pred HHHHHHHHHHhCcceEEEcCc
Confidence 356778899999999998883
No 152
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=40.11 E-value=1.1e+02 Score=30.43 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=45.7
Q ss_pred CCCeEEEEEccCCCCCC-cHHHHHHHHHh---------CCCEEEEcccccccc---cccccc-cchhHHHHHHH-HH---
Q 012311 157 DASYKFGIIGDLGQTYN-SLSTLEHYMES---------GAQTVLFLGDLSYAD---RYQFID-VGVRWDSWGRF-VE--- 218 (466)
Q Consensus 157 ~~~~~f~v~GD~g~~~~-~~~tl~~~~~~---------~~dfvl~~GDl~Y~~---~~~~~d-~~~~wd~~~~~-~~--- 218 (466)
+...+|+++||...... ....|+++.+. -|-.+++.|+++..- +..... +....|.+... +.
T Consensus 25 ~~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp 104 (291)
T PTZ00235 25 DKRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFK 104 (291)
T ss_pred CCceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhCh
Confidence 34678999999988652 22333332221 288899999998642 100111 12233333331 21
Q ss_pred HHhhcCCeEEcCCCceee
Q 012311 219 RSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 219 ~l~~~~P~~~~~GNHE~~ 236 (466)
.+..+.-++.+||-.|-.
T Consensus 105 ~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 105 LILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHhcCeEEEECCCCCCC
Confidence 244567799999999963
No 153
>PRK13792 lysozyme inhibitor; Provisional
Probab=37.77 E-value=1.5e+02 Score=25.67 Aligned_cols=23 Identities=9% Similarity=0.300 Sum_probs=13.1
Q ss_pred CCceEEEeeecCCCCcEEEEEEcCC
Q 012311 58 SPQQVHITQGDYDGKAVIISWVTPH 82 (466)
Q Consensus 58 ~P~qv~lt~~~~~~~~~~V~W~t~~ 82 (466)
.|+.|+-.=.+ ...++|......
T Consensus 43 ~~~tv~YqC~~--~~~~tV~y~n~~ 65 (127)
T PRK13792 43 DTRSVDYKCEN--GRKFTVQYLNKG 65 (127)
T ss_pred ccceEEEECCC--CCEEEEEEeCCC
Confidence 35556555443 345777777543
No 154
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=37.09 E-value=43 Score=27.38 Aligned_cols=24 Identities=13% Similarity=0.421 Sum_probs=20.9
Q ss_pred cceEEEEEecCCCCCCEEEEEecc
Q 012311 116 SGYIHQCLVDGLEYDTKYYYKIGS 139 (466)
Q Consensus 116 ~~~~h~v~l~gL~P~T~Y~Yrv~~ 139 (466)
.+-+.++.+.++.+|+.|.|||..
T Consensus 43 ~~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 43 YGGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred cCCEEEEEECCCCCCCEEEEEECC
Confidence 456788999999999999999975
No 155
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=36.98 E-value=42 Score=28.21 Aligned_cols=24 Identities=25% Similarity=0.577 Sum_probs=21.0
Q ss_pred cceEEEEEecCCCCCCEEEEEecc
Q 012311 116 SGYIHQCLVDGLEYDTKYYYKIGS 139 (466)
Q Consensus 116 ~~~~h~v~l~gL~P~T~Y~Yrv~~ 139 (466)
.+-++++.|.++.+|+.|-|||..
T Consensus 47 ~~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 47 TGDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred cCCEEEEEECCCCCCCEEEEEECC
Confidence 356888999999999999999974
No 156
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=35.52 E-value=48 Score=32.27 Aligned_cols=67 Identities=21% Similarity=0.181 Sum_probs=34.4
Q ss_pred EEEEccCCCCCCcHHHHHHHHHhCCCE-EEEcccccccccccccccchhHHHHHHHHHHHhhcC--CeEEcCCCceee
Q 012311 162 FGIIGDLGQTYNSLSTLEHYMESGAQT-VLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQ--PWIWSAGNHEIE 236 (466)
Q Consensus 162 f~v~GD~g~~~~~~~tl~~~~~~~~df-vl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~--P~~~~~GNHE~~ 236 (466)
..+.||.+......--+-++-...||. .|++||.+.. |+.+ ++--..+-.+.-+. -+-.++||||..
T Consensus 62 vtvcGDvHGqf~dl~ELfkiGG~~pdtnylfmGDyvdr-Gy~S-------vetVS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 62 VTVCGDVHGQFHDLIELFKIGGLAPDTNYLFMGDYVDR-GYYS-------VETVSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred eEEecCcchhHHHHHHHHHccCCCCCcceeeeeeeccc-ccch-------HHHHHHHHHhhccccceeEEecCchHHH
Confidence 556899986543221111222235665 6899999953 2211 11112222221122 356789999986
No 157
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=34.22 E-value=53 Score=26.57 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=6.6
Q ss_pred cCCCCcccccCC
Q 012311 43 IPLDNEAFAVPK 54 (466)
Q Consensus 43 ~p~~~~~~~~~~ 54 (466)
.||-+|.+.+|.
T Consensus 52 ~PWf~PlwEPps 63 (91)
T TIGR01165 52 KPWFSPLWEPPS 63 (91)
T ss_pred cccccccccCCc
Confidence 366666665543
No 158
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=32.80 E-value=53 Score=25.78 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=19.2
Q ss_pred ceEEEEEecCCCCCCEEEEEeccC
Q 012311 117 GYIHQCLVDGLEYDTKYYYKIGSG 140 (466)
Q Consensus 117 ~~~h~v~l~gL~P~T~Y~Yrv~~~ 140 (466)
.-++++.+.++ +|..|.|+|..+
T Consensus 39 ~G~W~~~v~~~-~g~~Y~y~v~~~ 61 (85)
T cd02853 39 DGWFEAEVPGA-AGTRYRYRLDDG 61 (85)
T ss_pred CcEEEEEeCCC-CCCeEEEEECCC
Confidence 35677899999 999999999843
No 159
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.64 E-value=88 Score=32.07 Aligned_cols=33 Identities=15% Similarity=0.404 Sum_probs=19.0
Q ss_pred CcCCCCcccccCCCCCCCceEEEeeecCCCCcEEEEEE
Q 012311 42 DIPLDNEAFAVPKGHNSPQQVHITQGDYDGKAVIISWV 79 (466)
Q Consensus 42 ~~p~~~~~~~~~~~~~~P~qv~lt~~~~~~~~~~V~W~ 79 (466)
++--+++..-++ ..|++|.+++.+ +++..+.-.
T Consensus 55 dvlYD~~~y~is---g~~etV~Vtl~G--~ns~~~~~~ 87 (403)
T COG4856 55 DVLYDSDKYFIS---GQPETVTVTLKG--PNSIVLKSE 87 (403)
T ss_pred EEEEcccccccc---CCceEEEEEEeC--Ccceeeeee
Confidence 333355444332 579999999886 344444443
No 160
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=31.80 E-value=55 Score=26.50 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.2
Q ss_pred ccceEEEEEecCCCCCCEEEEEecc
Q 012311 115 KSGYIHQCLVDGLEYDTKYYYKIGS 139 (466)
Q Consensus 115 ~~~~~h~v~l~gL~P~T~Y~Yrv~~ 139 (466)
..+-++++.+.++.+|+.|.|||..
T Consensus 44 ~~~gvw~~~v~~~~~g~~Y~y~i~~ 68 (100)
T cd02860 44 GENGVWSVTLDGDLEGYYYLYEVKV 68 (100)
T ss_pred CCCCEEEEEeCCccCCcEEEEEEEE
Confidence 3456788999999999999999964
No 161
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=30.20 E-value=1.7e+02 Score=28.52 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=51.2
Q ss_pred CCeEEEEEccCCCCCCcHHHHHHHHHhCCCEEEEcccccccccccccccchhHHHHHHHHHHHhhcCCeEEcCCCceee
Q 012311 158 ASYKFGIIGDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (466)
Q Consensus 158 ~~~~f~v~GD~g~~~~~~~tl~~~~~~~~dfvl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P~~~~~GNHE~~ 236 (466)
...+|+..+|.+...+ ...++-+.+.+|+.++..|=.+|-.++... ......-.+.++.+....+--.+..-|=..
T Consensus 175 g~~~i~faSDvqGp~~-~~~l~~i~e~~P~v~ii~GPpty~lg~r~~--~~~~E~~irNl~~ii~~~~~~lViDHHllR 250 (304)
T COG2248 175 GKSSIVFASDVQGPIN-DEALEFILEKRPDVLIIGGPPTYLLGYRVG--PKSLEKGIRNLERIIEETNATLVIDHHLLR 250 (304)
T ss_pred CCeEEEEcccccCCCc-cHHHHHHHhcCCCEEEecCCchhHhhhhcC--hHHHHHHHHHHHHHHHhCcceEEEeehhhc
Confidence 5678888999876543 556777888899999999999976554221 111223345666666666666677777554
No 162
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.14 E-value=62 Score=26.85 Aligned_cols=29 Identities=34% Similarity=0.344 Sum_probs=16.4
Q ss_pred ChhhhHHHHHHHHHHHHHhhhhccCCCCCccc
Q 012311 1 MEKMRLLLHLALTTAIVLLSDVNGGSAGITSK 32 (466)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (466)
|.+.+.|-+++|| ++++++ ..|.+|.-+=
T Consensus 1 M~~~ktlsr~al~-~av~~L--agC~~gpKsl 29 (121)
T COG4259 1 MSKLKTLSRLALL-LAVAAL--AGCGGGPKSL 29 (121)
T ss_pred CcchHHHHHHHHH-HHHHHH--HHccCCCccc
Confidence 6777777777755 444443 3355555443
No 163
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=29.86 E-value=1e+02 Score=25.03 Aligned_cols=64 Identities=13% Similarity=0.226 Sum_probs=30.9
Q ss_pred CCCceEEEeeecCCCCcEEEEEEcCCCCCCcEEEEeecCCCCceEEEeEEEEeeeeccccceEEEEEecCCCCCCEEEEE
Q 012311 57 NSPQQVHITQGDYDGKAVIISWVTPHEPGPSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYK 136 (466)
Q Consensus 57 ~~P~qv~lt~~~~~~~~~~V~W~t~~~~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~~~~h~v~l~gL~P~T~Y~Yr 136 (466)
..|..|.+..| ..++|.|.-.+.. ...+.... +... ... ..+-.-.++++.++||+ |.|.
T Consensus 32 f~P~~i~v~~G----~~v~l~~~N~~~~-~h~~~i~~----~~~~-----~~l-----~~g~~~~~~f~~~~~G~-y~~~ 91 (104)
T PF13473_consen 32 FSPSTITVKAG----QPVTLTFTNNDSR-PHEFVIPD----LGIS-----KVL-----PPGETATVTFTPLKPGE-YEFY 91 (104)
T ss_dssp EES-EEEEETT----CEEEEEEEE-SSS--EEEEEGG----GTEE-----EEE------TT-EEEEEEEE-S-EE-EEEB
T ss_pred EecCEEEEcCC----CeEEEEEEECCCC-cEEEEECC----CceE-----EEE-----CCCCEEEEEEcCCCCEE-EEEE
Confidence 46888887755 4688999766432 22232222 1111 111 12333446677888885 8888
Q ss_pred eccC
Q 012311 137 IGSG 140 (466)
Q Consensus 137 v~~~ 140 (466)
|...
T Consensus 92 C~~~ 95 (104)
T PF13473_consen 92 CTMH 95 (104)
T ss_dssp -SSS
T ss_pred cCCC
Confidence 8754
No 164
>PF14030 DUF4245: Protein of unknown function (DUF4245)
Probab=28.82 E-value=3.9e+02 Score=24.15 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=20.5
Q ss_pred CceEEEeeecCCCCcEEEEEEcCCCCCCcEEEEeecCC
Q 012311 59 PQQVHITQGDYDGKAVIISWVTPHEPGPSTVSYGTSAD 96 (466)
Q Consensus 59 P~qv~lt~~~~~~~~~~V~W~t~~~~~~~~V~yg~~~~ 96 (466)
|......-.+ ....-.|-|+|++ ...|+.-.+..
T Consensus 69 ~nSar~~~~~-g~~~w~vG~vt~~---~~yv~l~Qs~~ 102 (169)
T PF14030_consen 69 ANSARRQGVG-GVPAWHVGYVTPD---GQYVQLTQSDA 102 (169)
T ss_pred eeeEEecCCC-CcceEEEEEEcCC---CCEEEEEEcCC
Confidence 4455444333 2367889999975 45666665543
No 165
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=27.81 E-value=90 Score=25.73 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=12.4
Q ss_pred EEEEEccCCCCCCcHHHHHHHHHhCCC
Q 012311 161 KFGIIGDLGQTYNSLSTLEHYMESGAQ 187 (466)
Q Consensus 161 ~f~v~GD~g~~~~~~~tl~~~~~~~~d 187 (466)
+|+.+||.|+.. .++..++++.-|+
T Consensus 66 kfiLIGDsgq~D--peiY~~ia~~~P~ 90 (100)
T PF09949_consen 66 KFILIGDSGQHD--PEIYAEIARRFPG 90 (100)
T ss_pred cEEEEeeCCCcC--HHHHHHHHHHCCC
Confidence 555566655543 3444444444333
No 166
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=25.63 E-value=1e+02 Score=25.48 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=12.7
Q ss_pred ChhhhHHHHHHHHHHHHHhhhhcc
Q 012311 1 MEKMRLLLHLALTTAIVLLSDVNG 24 (466)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (466)
|+++.+++.+++.+|+++.+....
T Consensus 1 ~~~~~~~L~~~vi~l~~~pl~~~~ 24 (100)
T PRK02898 1 KMKKNLLLLLLVILLAVLPLFIYS 24 (100)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhc
Confidence 455666655555545555554433
No 167
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=25.38 E-value=1.7e+02 Score=23.26 Aligned_cols=9 Identities=33% Similarity=0.704 Sum_probs=4.8
Q ss_pred ceEEEeeec
Q 012311 60 QQVHITQGD 68 (466)
Q Consensus 60 ~qv~lt~~~ 68 (466)
..|.+++++
T Consensus 48 ~~vtlsqgG 56 (100)
T PF05984_consen 48 KNVTLSQGG 56 (100)
T ss_pred cceEEcCCC
Confidence 345566654
No 168
>PF15284 PAGK: Phage-encoded virulence factor
Probab=24.40 E-value=76 Score=23.62 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=11.3
Q ss_pred Chhh-hHHHHHHHHHHHHHhhhh
Q 012311 1 MEKM-RLLLHLALTTAIVLLSDV 22 (466)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~ 22 (466)
|||- +++++|.+.+.+.+.+++
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSas 23 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSAS 23 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHH
Confidence 6654 455555555555544443
No 169
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=23.16 E-value=1.3e+02 Score=28.70 Aligned_cols=64 Identities=22% Similarity=0.341 Sum_probs=35.1
Q ss_pred EEEEccCCCCCCcHHHHHHHHHh---CCCE-EEEcccccccccccccccchhHHHHHHHHHHHhhcCC--eEEcCCCcee
Q 012311 162 FGIIGDLGQTYNSLSTLEHYMES---GAQT-VLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP--WIWSAGNHEI 235 (466)
Q Consensus 162 f~v~GD~g~~~~~~~tl~~~~~~---~~df-vl~~GDl~Y~~~~~~~d~~~~wd~~~~~~~~l~~~~P--~~~~~GNHE~ 235 (466)
+.|-||.|... .-+-++-+. -||- -+++||++...-+ ..+.|..+ --+.++.| +-...||||.
T Consensus 48 VTvCGDIHGQF---yDL~eLFrtgG~vP~tnYiFmGDfVDRGyy-------SLEtfT~l-~~LkaryP~~ITLlRGNHEs 116 (306)
T KOG0373|consen 48 VTVCGDIHGQF---YDLLELFRTGGQVPDTNYIFMGDFVDRGYY-------SLETFTLL-LLLKARYPAKITLLRGNHES 116 (306)
T ss_pred eeEeeccchhH---HHHHHHHHhcCCCCCcceEEeccccccccc-------cHHHHHHH-HHHhhcCCceeEEeeccchh
Confidence 44689997643 122333332 3444 5789999953222 12334332 23334455 5568899997
Q ss_pred e
Q 012311 236 E 236 (466)
Q Consensus 236 ~ 236 (466)
.
T Consensus 117 R 117 (306)
T KOG0373|consen 117 R 117 (306)
T ss_pred h
Confidence 6
No 170
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=22.75 E-value=1.7e+02 Score=30.57 Aligned_cols=77 Identities=17% Similarity=0.309 Sum_probs=44.1
Q ss_pred ccCCCCCCCceEEEeeec--CCCCcEEEEEEcCCCCC---Cc-EEEEeecCCCCceEEEeEEEEeeeeccccceEEEEEe
Q 012311 51 AVPKGHNSPQQVHITQGD--YDGKAVIISWVTPHEPG---PS-TVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLV 124 (466)
Q Consensus 51 ~~~~~~~~P~qv~lt~~~--~~~~~~~V~W~t~~~~~---~~-~V~yg~~~~~~~~~a~g~~~~y~~~~~~~~~~h~v~l 124 (466)
.+.+++-.|....|.+.+ ...++++++|..+...+ +. .++..+..+...+. .| .|.---+++
T Consensus 430 q~ka~s~vpatpilq~~ec~t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~fre------vy------~g~etmctv 497 (699)
T KOG4367|consen 430 QVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFRE------VY------VGKETMCTV 497 (699)
T ss_pred eeecCCCCCCCceeehhhhhccCCceEEEeecCCCCCCCCcceEEEeecCCCCceeE------EE------ecCceeEEe
Confidence 445555556555565432 23579999999764222 22 34444433221111 12 122234789
Q ss_pred cCCCCCCEEEEEecc
Q 012311 125 DGLEYDTKYYYKIGS 139 (466)
Q Consensus 125 ~gL~P~T~Y~Yrv~~ 139 (466)
+||-.+++|--||.+
T Consensus 498 dglhfns~y~arvka 512 (699)
T KOG4367|consen 498 DGLHFNSTYNARVKA 512 (699)
T ss_pred cceecchhHHHHHHH
Confidence 999999999999965
No 171
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.69 E-value=79 Score=28.04 Aligned_cols=24 Identities=38% Similarity=0.945 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhccCCCCCeEEEEec
Q 012311 291 TPQWEWLREELKKVDREKTPWLIVLMH 317 (466)
Q Consensus 291 ~~Q~~WL~~~L~~~~r~~~~w~IV~~H 317 (466)
+--++||.+++.+ .+.||+|+++-
T Consensus 119 ~isy~~lr~~I~e---~dkp~LilfGT 142 (190)
T COG4752 119 TISYSWLRNEIQE---RDKPWLILFGT 142 (190)
T ss_pred cccHHHHHHHHhh---cCCcEEEEecC
Confidence 4468999999998 67899999753
No 172
>PF05927 Penaeidin: Penaeidin; InterPro: IPR009226 This family consists of several isoforms of the penaeidin protein, which is specific to shrimps. Penaeidins, a unique family of antimicrobial peptides (AMPs) with both proline and cysteine-rich domains, were initially identified in the hemolymph of the Pacific white shrimp, Penaeus vannamei [].; GO: 0008061 chitin binding, 0005737 cytoplasm; PDB: 1UEO_A 1XV3_A.
Probab=22.68 E-value=39 Score=25.63 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=4.7
Q ss_pred HHHHHHHHHhhhhccC-----CCCCcccccCC
Q 012311 10 LALTTAIVLLSDVNGG-----SAGITSKFIRT 36 (466)
Q Consensus 10 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 36 (466)
|.+| |..+++++..| .+|+|.||.|+
T Consensus 3 LVVC-LVFLaSFALVCQG~gykggyT~p~~rp 33 (73)
T PF05927_consen 3 LVVC-LVFLASFALVCQGQGYKGGYTRPFPRP 33 (73)
T ss_dssp ----------------------S-SSSSS---
T ss_pred EEEe-hHHHHHHHHhccCccccCCcccccCCC
Confidence 3344 44444544333 56778888777
No 173
>KOG4222 consensus Axon guidance receptor Dscam [Signal transduction mechanisms]
Probab=22.54 E-value=1.8e+02 Score=34.26 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=43.3
Q ss_pred CCCCceE-EEeeecCCCCcEEEEEEcCCCC--CCcEEEEeecCCCCceEEEeEEEEeeeeccccceEEEEEecCCCCCCE
Q 012311 56 HNSPQQV-HITQGDYDGKAVIISWVTPHEP--GPSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTK 132 (466)
Q Consensus 56 ~~~P~qv-~lt~~~~~~~~~~V~W~t~~~~--~~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~~~~h~v~l~gL~P~T~ 132 (466)
+..|+.+ |++.+....++..|+|.-+... ....+.|...-. .++.+.+....-.....-.++|.+|.+|+.
T Consensus 746 Sapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~------~~e~tr~h~n~t~~a~~~sv~i~~l~~g~a 819 (1281)
T KOG4222|consen 746 SAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECS------GGEKTRIHINKTTNARTGSVTIGNLVTGIA 819 (1281)
T ss_pred CCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEee------cCccccccccccccCCCCceEeccccccce
Confidence 4557775 6777777788999999876211 112222221100 011011110000123445689999999999
Q ss_pred EEEEecc
Q 012311 133 YYYKIGS 139 (466)
Q Consensus 133 Y~Yrv~~ 139 (466)
|.|+|-.
T Consensus 820 y~vtv~a 826 (1281)
T KOG4222|consen 820 YSVTVAA 826 (1281)
T ss_pred EEEEEee
Confidence 9999954
No 174
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=22.22 E-value=1.8e+02 Score=22.75 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=19.4
Q ss_pred cceEEEEEecCCCCCCEEEEEecc
Q 012311 116 SGYIHQCLVDGLEYDTKYYYKIGS 139 (466)
Q Consensus 116 ~~~~h~v~l~gL~P~T~Y~Yrv~~ 139 (466)
.|-.+...=.+|++|..|.|+|..
T Consensus 25 ~G~~R~F~T~~L~~G~~y~Y~v~a 48 (75)
T TIGR03000 25 TGTVRTFTTPPLEAGKEYEYTVTA 48 (75)
T ss_pred CccEEEEECCCCCCCCEEEEEEEE
Confidence 455666666899999999999976
No 175
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=21.98 E-value=1.3e+02 Score=25.92 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=10.9
Q ss_pred CCCceEEEeeecC
Q 012311 57 NSPQQVHITQGDY 69 (466)
Q Consensus 57 ~~P~qv~lt~~~~ 69 (466)
.+|++|+|.+++-
T Consensus 44 aaP~~i~L~Fse~ 56 (127)
T COG2372 44 AAPAAITLEFSEG 56 (127)
T ss_pred cCceeEEEecCCc
Confidence 5799999999864
No 176
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=21.69 E-value=1.1e+02 Score=23.68 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=20.0
Q ss_pred cceEEEEEec-CCCCCC-EEEEEeccC
Q 012311 116 SGYIHQCLVD-GLEYDT-KYYYKIGSG 140 (466)
Q Consensus 116 ~~~~h~v~l~-gL~P~T-~Y~Yrv~~~ 140 (466)
..-+++++|. +|++|+ .|.|+|...
T Consensus 47 ~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 47 DDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 4457778888 899986 999999865
No 177
>PF05423 Mycobact_memb: Mycobacterium membrane protein; InterPro: IPR008693 This family contains several membrane proteins from Mycobacterium species [].
Probab=21.22 E-value=1.7e+02 Score=25.67 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=19.1
Q ss_pred CCCCceEEEeeecCCCCcEEEEEEcC
Q 012311 56 HNSPQQVHITQGDYDGKAVIISWVTP 81 (466)
Q Consensus 56 ~~~P~qv~lt~~~~~~~~~~V~W~t~ 81 (466)
...|.+|.-...+.+++...|+|...
T Consensus 47 ~~~pk~V~YEV~G~~G~~~~I~Y~D~ 72 (140)
T PF05423_consen 47 PFNPKTVTYEVTGPPGSTATISYLDA 72 (140)
T ss_pred CCCCcEEEEEEEcCCCCeEEEEEEcC
Confidence 45688888877776667788888754
No 178
>COG3562 KpsS Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=21.03 E-value=2.5e+02 Score=28.58 Aligned_cols=79 Identities=13% Similarity=0.152 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHhh-ccCCCCCeEEEEeccccccCCCcccccCHHHHHHHHHHHHHcCCc-EEEecccceecCCcccccCC
Q 012311 291 TPQWEWLREELKK-VDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVD-YRISNLHYNISSGDCFPVPD 368 (466)
Q Consensus 291 ~~Q~~WL~~~L~~-~~r~~~~w~IV~~H~P~y~s~~~h~~~~~~~r~~l~~ll~~y~Vd-~~~~gh~~~~~~~~~~~~~~ 368 (466)
.-|...+++.|++ +++..+.-.+++-|||+..+-. +.+......+.+|+|. -|++-|+-++. ..+..
T Consensus 250 ~s~r~fi~~ilaSFa~hapa~t~liikhHpmdrg~i-------dy~~~i~~~~~q~~v~~RvlYvhd~~lp----vllr~ 318 (403)
T COG3562 250 RSVRFFITEILASFAEHAPAGTNLIIKHHPMDRGFI-------DYPRDIKRRFVQYEVKGRVLYVHDVPLP----VLLRH 318 (403)
T ss_pred hhHHHHHHHHHHHHHhhCccccceEEEeccccccch-------hhHHHHHHHHHHhccCceEEEecCCCch----HHHHh
Confidence 5688999999998 3455555678888999976422 2444666788899887 44566653211 11134
Q ss_pred CCCcEEEEeCCCC
Q 012311 369 KSAPVYITVGDGG 381 (466)
Q Consensus 369 ~~g~vyiv~G~gG 381 (466)
..|+|-| .++.|
T Consensus 319 a~GmVTv-NsTsG 330 (403)
T COG3562 319 ALGMVTV-NSTSG 330 (403)
T ss_pred ccceEEE-ccccc
Confidence 5566643 44444
No 179
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=20.59 E-value=1.2e+02 Score=29.62 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=13.4
Q ss_pred HHHHHHHhCCCEEEEcccccccc
Q 012311 177 TLEHYMESGAQTVLFLGDLSYAD 199 (466)
Q Consensus 177 tl~~~~~~~~dfvl~~GDl~Y~~ 199 (466)
...++.+-.|-..|-.++--|..
T Consensus 125 vy~eLkKIAPTi~LkS~~~dY~e 147 (310)
T COG4594 125 VYKELKKIAPTIALKSRNEDYQE 147 (310)
T ss_pred HHHHHHhhcceeEecccCccHHH
Confidence 34445555677777666666643
No 180
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.52 E-value=90 Score=24.72 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=6.2
Q ss_pred ChhhhHHHH
Q 012311 1 MEKMRLLLH 9 (466)
Q Consensus 1 ~~~~~~~~~ 9 (466)
|||++.++.
T Consensus 1 MKK~kii~i 9 (85)
T PF11337_consen 1 MKKKKIILI 9 (85)
T ss_pred CCchHHHHH
Confidence 888666644
No 181
>PF13205 Big_5: Bacterial Ig-like domain
Probab=20.41 E-value=1.5e+02 Score=23.81 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=13.8
Q ss_pred cCCCCCCEEEEEeccC
Q 012311 125 DGLEYDTKYYYKIGSG 140 (466)
Q Consensus 125 ~gL~P~T~Y~Yrv~~~ 140 (466)
..|+||++|.-.|..+
T Consensus 70 ~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 70 QPLKPGTTYTVTIDSG 85 (107)
T ss_pred CcCCCCCEEEEEECCC
Confidence 5699999999999664
No 182
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=20.15 E-value=1.4e+02 Score=30.10 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=10.1
Q ss_pred ChhhhHHHHHHHHHHHHHhhh
Q 012311 1 MEKMRLLLHLALTTAIVLLSD 21 (466)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (466)
||+++-|++.+|+++.++.|+
T Consensus 1 ~k~~~~~v~~al~v~~LaaCS 21 (342)
T COG3317 1 MKSSAKLVLGALLVLLLAACS 21 (342)
T ss_pred CchHHHHHHHHHHHHHHhhcc
Confidence 566555555444434333333
Done!