BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012312
(466 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224127432|ref|XP_002329276.1| predicted protein [Populus trichocarpa]
gi|222870730|gb|EEF07861.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 258/492 (52%), Positives = 332/492 (67%), Gaps = 31/492 (6%)
Query: 1 MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPN 60
MA+V +C KIP K+ L I + RQ+ERG C C + + + S S ++ + W IY
Sbjct: 1 MAVVPICYKIPCKDHTLSIRNLARQHERGLLCACSAFAQGGSYLSISSDVQRNWPVIYTT 60
Query: 61 QDV--------------------AELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAK 100
DV L Q M H+ + +++E L + CA+K
Sbjct: 61 ADVLVKVKTRGRTNASKGTILNQGLLKFQSVMD--VPHLHKIHR--TSRENLSVACCASK 116
Query: 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLN 160
S +E Q+R+L+SY KL+D+ + SS+S E + +IN K EL+ L+AYL K++
Sbjct: 117 SGTNEKQLRLLDSYFGKLQDNVSEPSSDSCNERTDFLDTRVQINVKEELEYLNAYLDKVD 176
Query: 161 TDAKFS-------TDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDL 213
DA D+ TE N + +S+SK S+R +L+ +R LRN+ R
Sbjct: 177 KDANLENNVSSTFNDEATEENPIVKPISVSKESRRDNEERLRSFRNLRNQYVESGSRRSE 236
Query: 214 ALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEW 273
AL++ ETS YLI L SI++AVFLFEIASP+RNSEF FSLPLLYGAKINELILVGEW
Sbjct: 237 ALEQNYETSYFYLIGTLASINIAVFLFEIASPVRNSEFALFSLPLLYGAKINELILVGEW 296
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRLVTPMFLHSG FHV L W+LLTFGP+VC+ YG FTFFLIY LGGISGNLTSFLHTPE
Sbjct: 297 WRLVTPMFLHSGAFHVVLGSWSLLTFGPEVCRGYGSFTFFLIYVLGGISGNLTSFLHTPE 356
Query: 334 PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
PTVGGTGPVFAIIGAWLIYQ QNKD+I+KD +RMFQKA+++TA+SFI+S+FGP+D W H
Sbjct: 357 PTVGGTGPVFAIIGAWLIYQNQNKDVISKDDFDRMFQKAVITTAVSFILSHFGPIDDWTH 416
Query: 394 LGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFI 453
LGA TGI+YGF TC +QL DASSR+ Q+EGI L++++A+PCKSLI+FTIF++ L S +
Sbjct: 417 LGAVLTGIVYGFFTCATLQLDDASSRSGQDEGIALVKRHADPCKSLIIFTIFILFLSSML 476
Query: 454 FVFEPPLDTLAL 465
F EPPL+T+ L
Sbjct: 477 FFVEPPLETVVL 488
>gi|225451989|ref|XP_002279924.1| PREDICTED: uncharacterized protein LOC100256693 [Vitis vinifera]
Length = 486
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 263/486 (54%), Positives = 329/486 (67%), Gaps = 25/486 (5%)
Query: 1 MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSR-FSSTSDNMCK------- 52
MA+V +C K+ K+Q PI KI+RQ+E+GF CI + E S FSS MC
Sbjct: 1 MAVVPVCHKMSYKDQAYPIQKIIRQSEKGFGWDCIGIQEGSGCFSS----MCSDSTGISI 56
Query: 53 ------RWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSEC 106
RS+ + EL +MS S + S S+ AS +E L V A++SS +E
Sbjct: 57 KLKARVHNRSLLQFRHRTELHGLHRMSYTESCLRSISENASQRENLGTVWSASESSTNEK 116
Query: 107 QIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFS 166
Q+R+L+ Y KL ++ +S SS + EL +SG+ K L SL+ +LGK+N DA
Sbjct: 117 QLRLLDLYFGKLHNEDDGSSLHSSDKKTELMDQSGQFKPKEGLRSLEDHLGKINKDATSE 176
Query: 167 T-------DQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTE 219
D+ E SI++ GKLK Y ELRNKDG + Q +
Sbjct: 177 NYLPSSPCDKIDEDKHDIEPFSITEDVNPVDEGKLKSYAELRNKDGDSGPKNSREQQPYD 236
Query: 220 ETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 279
ETS+LYLISILVSI++AV LFE+ASPIRNS+ SLPL+YGAKIN+LILVGEWWRLVTP
Sbjct: 237 ETSDLYLISILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTP 296
Query: 280 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT 339
MFLHSG+FHVAL CW LLTFGPQVC+ YG FTFFLIY LGGISGNLTSFLHTP+ TVGGT
Sbjct: 297 MFLHSGIFHVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGT 356
Query: 340 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 399
GPVFAIIGAW+I+Q QNKD+IAKDVSE M+ KAI++TALS I+S+F P+D W H GAAFT
Sbjct: 357 GPVFAIIGAWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFT 416
Query: 400 GIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPP 459
GI YG+ TCP +QL SS+ Q+EGITL+R+YA+PCKSLI+FT+FV++L +F EPP
Sbjct: 417 GIAYGYFTCPTIQLNHTSSKTGQKEGITLVRRYADPCKSLIIFTLFVLVLICVLFFIEPP 476
Query: 460 LDTLAL 465
L+TL
Sbjct: 477 LNTLVF 482
>gi|296087301|emb|CBI33675.3| unnamed protein product [Vitis vinifera]
Length = 523
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 263/486 (54%), Positives = 329/486 (67%), Gaps = 25/486 (5%)
Query: 1 MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSR-FSSTSDNMCK------- 52
MA+V +C K+ K+Q PI KI+RQ+E+GF CI + E S FSS MC
Sbjct: 38 MAVVPVCHKMSYKDQAYPIQKIIRQSEKGFGWDCIGIQEGSGCFSS----MCSDSTGISI 93
Query: 53 ------RWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSEC 106
RS+ + EL +MS S + S S+ AS +E L V A++SS +E
Sbjct: 94 KLKARVHNRSLLQFRHRTELHGLHRMSYTESCLRSISENASQRENLGTVWSASESSTNEK 153
Query: 107 QIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFS 166
Q+R+L+ Y KL ++ +S SS + EL +SG+ K L SL+ +LGK+N DA
Sbjct: 154 QLRLLDLYFGKLHNEDDGSSLHSSDKKTELMDQSGQFKPKEGLRSLEDHLGKINKDATSE 213
Query: 167 T-------DQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTE 219
D+ E SI++ GKLK Y ELRNKDG + Q +
Sbjct: 214 NYLPSSPCDKIDEDKHDIEPFSITEDVNPVDEGKLKSYAELRNKDGDSGPKNSREQQPYD 273
Query: 220 ETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 279
ETS+LYLISILVSI++AV LFE+ASPIRNS+ SLPL+YGAKIN+LILVGEWWRLVTP
Sbjct: 274 ETSDLYLISILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTP 333
Query: 280 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT 339
MFLHSG+FHVAL CW LLTFGPQVC+ YG FTFFLIY LGGISGNLTSFLHTP+ TVGGT
Sbjct: 334 MFLHSGIFHVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGT 393
Query: 340 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 399
GPVFAIIGAW+I+Q QNKD+IAKDVSE M+ KAI++TALS I+S+F P+D W H GAAFT
Sbjct: 394 GPVFAIIGAWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFT 453
Query: 400 GIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPP 459
GI YG+ TCP +QL SS+ Q+EGITL+R+YA+PCKSLI+FT+FV++L +F EPP
Sbjct: 454 GIAYGYFTCPTIQLNHTSSKTGQKEGITLVRRYADPCKSLIIFTLFVLVLICVLFFIEPP 513
Query: 460 LDTLAL 465
L+TL
Sbjct: 514 LNTLVF 519
>gi|255551392|ref|XP_002516742.1| conserved hypothetical protein [Ricinus communis]
gi|223544115|gb|EEF45640.1| conserved hypothetical protein [Ricinus communis]
Length = 429
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/401 (58%), Positives = 295/401 (73%), Gaps = 25/401 (6%)
Query: 70 WKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSES 129
W M S +GS + K S EK Q+R+L+SY KL+ D+ Q S++S
Sbjct: 32 WSMKGENSSMGSHASKTSINEK---------------QLRLLDSYFGKLQGDANQPSTDS 76
Query: 130 SGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF-------STDQTTERNLVAAQLSI 182
S E +L ++S EIN EL SL++YL KL+ D+ S D TTE + +S+
Sbjct: 77 SDETTKLGNKSKEINPTEELQSLNSYLDKLSKDSNLENYVSSTSDDLTTESEKL---VSV 133
Query: 183 SKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEI 242
+ SKRG K K + +LR KD R L R ALQ+ +ETS+LYL SILVSI++AVFLFE+
Sbjct: 134 YEDSKRGEEEKPKSFVKLREKDANRGLRRSQALQQNDETSDLYLTSILVSINIAVFLFEL 193
Query: 243 ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ 302
ASP+RNSEF F+LPLLYGAKIN+LILVGEWWRL+TPMFLHSG+FH+AL CW+LLTFGPQ
Sbjct: 194 ASPVRNSEFELFTLPLLYGAKINDLILVGEWWRLLTPMFLHSGVFHMALGCWSLLTFGPQ 253
Query: 303 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAK 362
V + YG FTF LI+ LGGISGNLTSFLHTPEPTVGGTGP+FAIIGAWL++Q QNKD+IAK
Sbjct: 254 VSRGYGSFTFVLIFILGGISGNLTSFLHTPEPTVGGTGPIFAIIGAWLVFQMQNKDVIAK 313
Query: 363 DVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
D+SE MFQKAI+ T LSFI+S+FGP+D W HLGA TGI+YG+ TCP +QL +ASSR+ Q
Sbjct: 314 DISESMFQKAIIITGLSFILSHFGPIDDWTHLGATLTGIVYGYFTCPTLQLDNASSRSGQ 373
Query: 423 EEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTL 463
+EG+ +R YAN CKSLI+F + +++L S +F EPPLDTL
Sbjct: 374 DEGVAFVRGYANSCKSLILFAVLIVLLISLLFFIEPPLDTL 414
>gi|356545710|ref|XP_003541279.1| PREDICTED: uncharacterized protein LOC100808799 [Glycine max]
Length = 503
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/490 (49%), Positives = 321/490 (65%), Gaps = 30/490 (6%)
Query: 1 MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCK------RW 54
MA + K P K+Q LP I+RQNE+ F C +L + SS +C+ +
Sbjct: 1 MAAFPMFYKTPYKDQNLPTQNIMRQNEKRFMLECDNLHRS--ISSIPGQICRSCQPWNKV 58
Query: 55 RSIYPNQDVAELPVQWKM--------SNITSHVGSFSKKA------STKEKLRMVRCAAK 100
+I ++ E V + N+T GS S + S E L V C+A
Sbjct: 59 NNILTKSNIKEKNVTRSILHDRCSLHKNVTKLCGSDSHLSLIQGCYSKTENLSRVWCSAS 118
Query: 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLN 160
SS +E Q+R L+SY KL+D++ ++ +SS ++ ++H +KT L+SLD YLGKLN
Sbjct: 119 SSSTEKQLRSLDSYFGKLQDNAKLSTFDSSHKVIQVHHIDDHARSKTGLESLDEYLGKLN 178
Query: 161 TDAKFS------TDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLA 214
A + +E NL A + S++K +R K Y ++ GV +
Sbjct: 179 RGANQEPHVPSYVENRSEENL-APKRSLTKDIERSNFRKRNAYVDIGRLKGVHGPRSAID 237
Query: 215 LQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWW 274
Q+ ETS+LYLI IL S+++AVFLFEIASPIRNS+ FS+PLLYGAKIN LI+VGEWW
Sbjct: 238 SQQHVETSSLYLIGILASVNIAVFLFEIASPIRNSDLELFSIPLLYGAKINHLIMVGEWW 297
Query: 275 RLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP 334
RLVTPMFLH+G+FH+A+SCWALLTFGPQVCK YG FTFFLIY LGG++ N SFLHTP+P
Sbjct: 298 RLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFISFLHTPDP 357
Query: 335 TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 394
TVGGTGPVFAIIGAWL+YQ QNKD+IA D SE +F KA++ TAL FI+S+FGP+D W+H
Sbjct: 358 TVGGTGPVFAIIGAWLMYQIQNKDVIASDASENLFHKAVIMTALIFILSHFGPIDEWSHF 417
Query: 395 GAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIF 454
GAAF+G+ YGFLT P++QL D+SS Q EG+ L+R+Y + CKS+ +FTIF+I+L SF+F
Sbjct: 418 GAAFSGMAYGFLTSPILQLNDSSSGTGQ-EGLKLVRKYGDSCKSVFIFTIFIIVLSSFLF 476
Query: 455 VFEPPLDTLA 464
EPP + LA
Sbjct: 477 FMEPPPNALA 486
>gi|356573948|ref|XP_003555116.1| PREDICTED: uncharacterized protein LOC100815930 [Glycine max]
Length = 468
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/460 (49%), Positives = 302/460 (65%), Gaps = 31/460 (6%)
Query: 1 MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRF-SSTSDNMCKR---W-- 54
MA + K P K+Q LP ++RQNE+ F C ++ RF SST +C+ W
Sbjct: 1 MAAFPMFYKTPYKDQNLPTQNVMRQNEKRFMYECDNM---KRFISSTPGQICRSSQPWNK 57
Query: 55 ------RSIYPNQDVAELPVQWKMS---NIT------SHVGSFSKKASTKEKLRMVRCAA 99
+S ++V + + S N+T SH+ + S E L V C+A
Sbjct: 58 VNNVLTKSNTKERNVPRSILHGRCSLHKNVTKLCGSDSHLSLIKECYSKTENLSRVWCSA 117
Query: 100 KSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKL 159
SS +E Q+R L+SY KL+D++ + +SS ++ +LH + +KT L+SL+ YLGKL
Sbjct: 118 GSSSTEKQLRSLDSYFGKLQDNAKLRTFDSSHKVIQLHHIDRQARSKTGLESLEEYLGKL 177
Query: 160 NTDAKFS------TDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDL 213
N +A + +E NL A + S+SK +R K + ++R + +
Sbjct: 178 NHEANQEPCVPSYVENHSEENL-APKRSLSKDIERSNFRKQNAFVDIRRLKRLHDPRSAI 236
Query: 214 ALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEW 273
Q+ ETS+LYLI IL S+++AVFLFEIASPIR S+ FS+PLLYGAKIN LI+VGEW
Sbjct: 237 DSQQQVETSSLYLIGILASVNIAVFLFEIASPIRTSDLELFSIPLLYGAKINHLIMVGEW 296
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRLVTPMFLH+G+FH+A+SCWALLTFGPQVCK YG FTFFLIY LGG++ N TSFLHT +
Sbjct: 297 WRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFTSFLHTSD 356
Query: 334 PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
PTVGGTGPVFAIIGAWL+YQ QNK +IA D SE +FQKA++ TAL FI+S+FGP+D W+H
Sbjct: 357 PTVGGTGPVFAIIGAWLMYQIQNKHVIASDASENLFQKAVIMTALIFILSHFGPIDEWSH 416
Query: 394 LGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYA 433
GAAF+G+ YGFLT P++QL D+SS QEEG+ L+R+YA
Sbjct: 417 FGAAFSGMAYGFLTSPILQLNDSSSGTGQEEGLKLVRKYA 456
>gi|147826430|emb|CAN66509.1| hypothetical protein VITISV_003619 [Vitis vinifera]
Length = 585
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 236/471 (50%), Positives = 296/471 (62%), Gaps = 40/471 (8%)
Query: 1 MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSR-FSSTSDNMCK------- 52
MA+V +C K+ K+Q PI KI+RQ+E+GF CI + E S FSS MC
Sbjct: 1 MAVVPVCHKMSYKDQAYPIQKIIRQSEKGFGWDCIGIQEGSGCFSS----MCSDSTGISI 56
Query: 53 ------RWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSEC 106
RS+ + EL +MS S + S S+ AS +E L V A++SS +E
Sbjct: 57 KLKARVHNRSLLQFRHRTELHGLHRMSYTESCLRSISENASQRENLGTVWSASESSTNEK 116
Query: 107 QIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFS 166
Q+R+L+ Y KL ++ +S SS + EL +SG+ K L SL+ +LGK+N DA
Sbjct: 117 QLRLLDLYFGKLHNEDDGSSLHSSDKKTELMDQSGQFKPKEGLRSLEDHLGKINKDATSE 176
Query: 167 T-------DQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTE 219
D+ E SI++ GKLK Y ELRNKDG + Q +
Sbjct: 177 NYLPSSPCDKIDEDKHDIEPFSITEDVNPVDEGKLKSYAELRNKDGDSGPKNSREQQPYD 236
Query: 220 ETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 279
ETS+LYLISILVSI++AV LFE+ASPIRNS+ SLPL+YGAKIN+LILVGEWWRLVTP
Sbjct: 237 ETSDLYLISILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTP 296
Query: 280 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT 339
MFLHSG+FHVAL CW LLTFGPQVC+ YG FTFFLIY LGGISGNLTSFLHTP+ TVGGT
Sbjct: 297 MFLHSGIFHVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGT 356
Query: 340 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 399
GPVFAIIGAW+I+Q QNKD+IAKDVSE M+ KAI++TALS I+S+F P+D W H GAAFT
Sbjct: 357 GPVFAIIGAWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFT 416
Query: 400 GIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
+ L L A+ R R P + + F +++IILG
Sbjct: 417 A------SAELEALMMATGRGG--------RSLMGPLLA-VNFVVYLIILG 452
>gi|449439033|ref|XP_004137292.1| PREDICTED: uncharacterized protein LOC101206746 [Cucumis sativus]
Length = 477
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/429 (49%), Positives = 280/429 (65%), Gaps = 40/429 (9%)
Query: 70 WKMSNITSHVGSFSKKASTKEK-----LRMVRCAA-----------------KSSDSECQ 107
W++ + S V + S +A + L VRC+ + S +E Q
Sbjct: 50 WEIHDNDSSVVTISTRARKSRRGLKALLHHVRCSNGLDFEHSKVSEKLSQVWECSTNEKQ 109
Query: 108 IRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF-- 165
+R L SY +L+ + + +S +++ L +G+ AK EL LDAY K++ D
Sbjct: 110 LRSLGSYFGRLQGVGDRKNLDSLKKMKVL--DTGQFKAKKELQLLDAYFQKVDKDTGLHK 167
Query: 166 ----STDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGV-RSLERDLALQRTEE 220
S D+ E LV + S S R +L+ R ++ + +S+ LQ EE
Sbjct: 168 HPLSSFDEQEEGKLV---FTTSPSEDRVKDDELQ-IRHVKLSGMIHKSMPNKTQLQE-EE 222
Query: 221 TSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPM 280
+LYLIS LVSI++AVFLFE+ASP++NSE FSLP LYGAKINELILVGEWWRLVTPM
Sbjct: 223 VCDLYLISALVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPM 282
Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTG 340
FLHSG+ HVALSCW LLTFG QVC+ YGPFTFFLIY LGG+SGNLTSFLHTP+PTVGGTG
Sbjct: 283 FLHSGVLHVALSCWTLLTFGRQVCREYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGTG 342
Query: 341 PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTG 400
PVFA+IGAWL YQFQNKD++ KDVS++MF KA+++ +S I+SN GP+D W H GAAF+G
Sbjct: 343 PVFAMIGAWLSYQFQNKDVMTKDVSDKMFLKALVAAVISSILSNIGPIDEWTHTGAAFSG 402
Query: 401 IIYGFLTCPLVQLGDA----SSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVF 456
++YGFLT P+V++ DA SSR QE+GI L+R+YANPC+SL F +F++ S +F
Sbjct: 403 MLYGFLTSPIVEVNDASSSSSSRRGQEKGIKLVRKYANPCRSLAFFVLFIMGFISLVFFI 462
Query: 457 EPPLDTLAL 465
+PP L
Sbjct: 463 QPPFHHFGL 471
>gi|449483332|ref|XP_004156558.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101206746
[Cucumis sativus]
Length = 479
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/431 (48%), Positives = 278/431 (64%), Gaps = 42/431 (9%)
Query: 70 WKMSNITSHVGSFSKKASTKEK-----LRMVRCAA-----------------KSSDSECQ 107
W++ + S V + S +A + L VRC+ + S +E Q
Sbjct: 50 WEIHDNDSPVVTISTRARKSRRGLKALLHHVRCSNGLDFEHSKVSEKLSQVWECSTNEKQ 109
Query: 108 IRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF-- 165
+R L SY +L+ + + +S +++ L +G+ AK EL LDAY K++ D
Sbjct: 110 LRSLGSYFGRLQGVGDRKNLDSLKKMKVL--DTGQFKAKKELQLLDAYFQKVDKDTGLHK 167
Query: 166 ----STDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGV-RSLERDLALQRTEE 220
S D+ E LV + S S +L+ R ++ + +S+ LQ EE
Sbjct: 168 HPLSSFDEQEEGKLV---FTTSPSEDHVKDDELQ-IRHVKLSGMIHKSMPNKTQLQE-EE 222
Query: 221 TSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPM 280
+LYLIS LVSI++AVFLFE+ASP++NSE FSLP LYGAKINELILVGEWWRLVTPM
Sbjct: 223 VCDLYLISALVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPM 282
Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGG-T 339
FLHSG+ HVALSCW LLTFG QVC+ YGPFTFFLIY LGG+SGNLTSFLHTP+PTVGG
Sbjct: 283 FLHSGVLHVALSCWTLLTFGRQVCRXYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGRX 342
Query: 340 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 399
GPVFA+IGAWL YQFQNKD++ KDVS++MF KA+++ +S I+SN GP+D W H GAAF+
Sbjct: 343 GPVFAMIGAWLSYQFQNKDVMTKDVSDKMFLKALVAAVISSILSNIGPIDEWTHTGAAFS 402
Query: 400 GIIYGFLTCPLVQLGDA-----SSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIF 454
G++YGFLT P+V++ DA SSR QE+GI L+R+YANPC+SL F +F++ S +F
Sbjct: 403 GMLYGFLTSPIVEVNDASSSSSSSRRGQEKGIKLVRKYANPCRSLAFFVLFIMGFISLVF 462
Query: 455 VFEPPLDTLAL 465
+PP L
Sbjct: 463 FIQPPFHHFGL 473
>gi|15240938|ref|NP_198667.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|145334671|ref|NP_001078681.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|10176819|dbj|BAB10141.1| unnamed protein product [Arabidopsis thaliana]
gi|46518449|gb|AAS99706.1| At5g38510 [Arabidopsis thaliana]
gi|110741692|dbj|BAE98792.1| hypothetical protein [Arabidopsis thaliana]
gi|332006944|gb|AED94327.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|332006945|gb|AED94328.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
Length = 434
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 192/418 (45%), Positives = 269/418 (64%), Gaps = 21/418 (5%)
Query: 49 NMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQI 108
N +R+ S ++ +AE + + S++ S S + +L +VR ++++ ++ ++
Sbjct: 21 NGLRRFSSGLKHRTMAEATTLGRDCRMKSYMKSIPYCRSPRRRLCLVRASSENKITKQRL 80
Query: 109 RILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTD 168
++L+SY KL++D + S + +I+ R E+N ELDSL AYL KL DAK
Sbjct: 81 KLLDSYFGKLQNDDEKPSISTGDDID----RKAELNVNEELDSLSAYLDKLQKDAK---- 132
Query: 169 QTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIS 228
+ LV++ L + KS KL+ N + + + + E+T N Y +S
Sbjct: 133 ---SKGLVSSTLDVVKSEGGSVASKLRKTGIENNNSPFQQFDDE---DQAEDTLNFYAVS 186
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL SI+V V LFE A+P+RN+ G SLPLLYGAKIN+LIL GEWWRLVTPMFLHSG+ H
Sbjct: 187 ILASINVGVCLFEAAAPVRNNNMGLLSLPLLYGAKINDLILAGEWWRLVTPMFLHSGIPH 246
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 348
VALS WALLTFGP+VC+ YG FTF LIY LGG+SGN SFLHT +PTVGGTGP FA+IGA
Sbjct: 247 VALSSWALLTFGPKVCRDYGLFTFCLIYILGGVSGNFMSFLHTADPTVGGTGPAFALIGA 306
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
WL+ Q QNK++I + E +FQKAI+ T I+S+FGP+D W +LGA GI+YGF TC
Sbjct: 307 WLVDQNQNKEMIKSNEYEDLFQKAIIMTGFGLILSHFGPIDDWTNLGALIAGIVYGFFTC 366
Query: 409 PLVQLGDASSRNSQEEGITLI----RQYANPCKSLIVFTIFV-IILGSFIFVFEPPLD 461
P++QLG S ++EGI + + A+PCKS ++FTIFV +I+ S + + + PLD
Sbjct: 367 PVLQLGSGGSE--RQEGIVTVGPEKQNSADPCKSFLLFTIFVAVIVTSLLLIGDGPLD 422
>gi|297801768|ref|XP_002868768.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297314604|gb|EFH45027.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 399
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 185/379 (48%), Positives = 254/379 (67%), Gaps = 20/379 (5%)
Query: 87 STKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAK 146
S + +L +VR ++++ ++ ++++L+SY KL++D + S + +I+ R E+NA
Sbjct: 25 SPRGRLCLVRASSENKITKRRLKLLDSYFGKLRNDDEKPSILTGDDID----RKAELNAD 80
Query: 147 TELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGV 206
ELDSL YL KL DAK + LV++ L + KS KL+ N
Sbjct: 81 KELDSLSVYLDKLQKDAK-------SKGLVSSTLDVVKSEGGSVASKLRKTGIESNNSPF 133
Query: 207 RSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINE 266
+ L+ D ++ +T N Y +SIL SI+V V LFE A+P+RN++ G SLPLLYGAKIN+
Sbjct: 134 QQLDDD---DQSVDTLNFYAVSILASINVGVCLFEAAAPVRNNDMGLLSLPLLYGAKIND 190
Query: 267 LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT 326
LIL G+WWRLVTPMFLHSG+ HVALS WALLTFGP+VC+ YG FTF LIY LGG+SGN
Sbjct: 191 LILAGQWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYILGGVSGNFM 250
Query: 327 SFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
SFLHT +PTVGGTGP FA+IGAWL+ Q QNK++I + E +FQKAI+ T I+S+FG
Sbjct: 251 SFLHTADPTVGGTGPAFALIGAWLVDQNQNKEMIKSNEYEDLFQKAIIMTGFGLILSHFG 310
Query: 387 PVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITL---IRQYANPCKSLIVFT 443
P+D W +LGA GI+YGF TCP++QL S R QE +T+ + A+PCKS ++FT
Sbjct: 311 PIDDWTNLGALIAGIVYGFFTCPVLQLERGSER--QEGTVTVGPEKQNSADPCKSFLLFT 368
Query: 444 IFV-IILGSFIFVFEPPLD 461
IFV +I+ S + + + PLD
Sbjct: 369 IFVAVIVTSLVLIGDGPLD 387
>gi|413925970|gb|AFW65902.1| hypothetical protein ZEAMMB73_057038 [Zea mays]
Length = 503
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 171/364 (46%), Positives = 231/364 (63%), Gaps = 28/364 (7%)
Query: 107 QIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFS 166
Q+R LESY +K N S+ + + +SG ++ E+D++ A + DA
Sbjct: 164 QLRALESYFSKF------NPSQQLYSLPQKKHKSGP-SSSNEVDAIIA-----DEDA--- 208
Query: 167 TDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERD----LALQRTEETS 222
NL S+ RG+ G +K + N+ L D L + ++ S
Sbjct: 209 -------NLKNRADSLQVQIDRGHTG-IKSNQNTPNEVYKEYLIFDEKSLLDMHTDDQAS 260
Query: 223 NLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFL 282
L ++L +++AV LFEIASP++NSE + SLPLLYGAKIN LIL GEWWRL+TPM L
Sbjct: 261 GFCLTNLLAGVNIAVLLFEIASPVKNSENEYLSLPLLYGAKINNLILSGEWWRLLTPMCL 320
Query: 283 HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPV 342
HSG H+AL CWALL FGP+VC++YG TFFLIY LGGI GNL+SF+HTPE TV GTGPV
Sbjct: 321 HSGFLHIALGCWALLIFGPRVCRAYGQRTFFLIYILGGICGNLSSFVHTPEITVCGTGPV 380
Query: 343 FAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
F++IGAWL+YQ QNK +I KDVSE MF +A+++ ALSF++S FG +D WAHLGA +GI
Sbjct: 381 FSLIGAWLVYQGQNKQVIDKDVSESMFWQAVIAAALSFLLSIFGRIDNWAHLGATISGIF 440
Query: 403 YGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDT 462
+G+LTCP V+ D S++N Q+E + LIRQ A+PCKS VF I ++ F + +
Sbjct: 441 FGYLTCPSVEF-DNSAKNGQKEAVALIRQQAHPCKSAAVFFITILAFAVLAFAYGTQFNN 499
Query: 463 LALR 466
+ L
Sbjct: 500 MDLE 503
>gi|218190628|gb|EEC73055.1| hypothetical protein OsI_07010 [Oryza sativa Indica Group]
Length = 483
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 168/367 (45%), Positives = 234/367 (63%), Gaps = 35/367 (9%)
Query: 119 KDD----SIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNT-DAK--FSTDQTT 171
KDD S + S E +G + SR E+N L +L Y KLNT DA+ +S QT
Sbjct: 119 KDDEGSCSSRISDEDNGTLSNA-SRKMEVN---HLGALRCYFSKLNTEDAQKPYSFHQTN 174
Query: 172 ER-------NLVAAQLSISKSSKRGYMGKL-----------KGYRELRNKDGVRSLERD- 212
++ N+ A ++ R + KGY +D L D
Sbjct: 175 KQRTGPLSTNIEEANMATDYGDFRNTLESFEINFNRRKKGTKGYLNTAVEDYTNYLIFDE 234
Query: 213 ---LALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELIL 269
L +Q+ ++TS+ L ++L +I++AV LFEIASP+RNS+ SLPL+YGAKIN+LIL
Sbjct: 235 KNFLDMQQDDQTSSFCLTNLLAAINIAVMLFEIASPVRNSDIENLSLPLMYGAKINDLIL 294
Query: 270 VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL 329
GEWWRL+TPM LHSG H+AL CW LL FGP+V ++YG TF L+Y LGG+ GNLTS+L
Sbjct: 295 SGEWWRLLTPMCLHSGFLHIALGCWVLLIFGPRVSRAYGQTTFLLMYILGGVCGNLTSYL 354
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
HT E TV GTGPVFA+IGAWL+YQ QNKD I K+VSE MF +A+++T LSF++S+FG +D
Sbjct: 355 HTSELTVCGTGPVFALIGAWLVYQSQNKDAIDKNVSETMFSQAVVATTLSFLLSSFGRID 414
Query: 390 TWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIIL 449
W HLGA G+++G+LTCP VQ+ +A+ + ++ + L+R+ A+P KS+ +F I +I+L
Sbjct: 415 NWTHLGATICGLLFGYLTCPSVQVDNAAKKG--QKAVVLVRRQASPWKSIAIFVISIIVL 472
Query: 450 GSFIFVF 456
F F +
Sbjct: 473 ALFAFAY 479
>gi|255646809|gb|ACU23876.1| unknown [Glycine max]
Length = 212
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 133/196 (67%), Positives = 165/196 (84%), Gaps = 1/196 (0%)
Query: 269 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF 328
+VGEWWRLVTPMFLH+G+FH+A+SCWALLTFGPQVCK YG FTFFLIY LGG++ N SF
Sbjct: 1 MVGEWWRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFISF 60
Query: 329 LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
LHTP+PTVGGTGPVFAIIGAWL+YQ QNKD+IA D SE +F KA++ TAL FI+S+FGP+
Sbjct: 61 LHTPDPTVGGTGPVFAIIGAWLMYQIQNKDVIASDASENLFHKAVIMTALIFILSHFGPI 120
Query: 389 DTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVII 448
D W+H GAAF+G+ YGFLT P++QL D+SS Q EG+ L+R+Y + CKS+ +FTIF+I+
Sbjct: 121 DEWSHFGAAFSGMAYGFLTSPILQLNDSSSGTGQ-EGLKLVRKYGDSCKSVFIFTIFIIV 179
Query: 449 LGSFIFVFEPPLDTLA 464
L SF+F EPP + LA
Sbjct: 180 LSSFLFFMEPPPNALA 195
>gi|388508254|gb|AFK42193.1| unknown [Lotus japonicus]
Length = 199
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 133/197 (67%), Positives = 163/197 (82%), Gaps = 3/197 (1%)
Query: 269 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF 328
+VGEWWRLVTPMFLH+G+FH+ALSCWALL+FGPQVCK YG FTFF+IY LGG+SGNLTSF
Sbjct: 1 MVGEWWRLVTPMFLHAGIFHLALSCWALLSFGPQVCKGYGSFTFFMIYILGGVSGNLTSF 60
Query: 329 LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
+HTP+P VGGTGPVFA+IGAWL+YQ QN+D+IA D SE +FQKAI+ TAL FI+S+ GP+
Sbjct: 61 MHTPDPAVGGTGPVFAVIGAWLMYQIQNRDVIANDASENLFQKAIIITALGFILSSPGPI 120
Query: 389 DTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVII 448
D W+H GAAFTG+ YGFLT P +QL D +S +EEG+ L+R+ + KSLI+FTIF+ +
Sbjct: 121 DEWSHFGAAFTGMAYGFLTSPALQL-DDTSGTGREEGLKLVRRNGDSWKSLIIFTIFIAV 179
Query: 449 LGSFIFVFEPPL--DTL 463
L S F EPPL DTL
Sbjct: 180 LSSLPFFMEPPLSADTL 196
>gi|116789343|gb|ABK25213.1| unknown [Picea sitchensis]
Length = 301
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/252 (51%), Positives = 176/252 (69%), Gaps = 5/252 (1%)
Query: 212 DLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVG 271
D + T+ + N YLI+ L +I++AVFLFE+ASP+++S+ G SLPLL+GAKINELIL G
Sbjct: 36 DGPVSSTDVSYNSYLINTLAAINIAVFLFELASPVKSSDAGILSLPLLFGAKINELILNG 95
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
EWWRL+TP FLHSGL H+A S WALLTFGP V +YG F F +IY LGG+ GNL SF HT
Sbjct: 96 EWWRLITPKFLHSGLLHIAFSSWALLTFGPLVDTAYGSFAFCMIYFLGGVCGNLMSFFHT 155
Query: 332 PEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
P+ TVGGTGPV AIIG+W+IY FQN++ + +++++ + QK +++ LS +S P+D W
Sbjct: 156 PDATVGGTGPVLAIIGSWIIYLFQNREALGEEMADNLIQKVAVASVLSVALSYLTPIDDW 215
Query: 392 AHLGAAFTGIIYGFLTCPLVQLGDASSR-----NSQEEGITLIRQYANPCKSLIVFTIFV 446
HLGAA G+I+G CP+V + S + N +EG L+ Q+ + K VFT+FV
Sbjct: 216 THLGAACAGLIFGVFICPVVPVHAPSKKLSYDPNDSQEGFLLVSQWPDARKLFTVFTLFV 275
Query: 447 IILGSFIFVFEP 458
+ L S FV P
Sbjct: 276 VTLVSLFFVLAP 287
>gi|242061182|ref|XP_002451880.1| hypothetical protein SORBIDRAFT_04g009170 [Sorghum bicolor]
gi|241931711|gb|EES04856.1| hypothetical protein SORBIDRAFT_04g009170 [Sorghum bicolor]
Length = 328
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 139/318 (43%), Positives = 203/318 (63%), Gaps = 14/318 (4%)
Query: 76 TSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEE 135
T H+G F K + + C + S S+ + R + + K+ + + S + E
Sbjct: 23 TGHLGHFGKDDN-------LICRSLKSISKPKAR--QYVIVKVHNKDVDEGCSSKDD--E 71
Query: 136 LHSRSGEINAKTELDSLDAYLGKLN-TDAKFSTDQTTERNLVAAQLSISKSSK-RGYMGK 193
+ S + +L +L++Y KL T +S Q ++ ++ + + + + +
Sbjct: 72 IISSPFQREEGNQLRALESYFSKLYPTPQLYSLPQKKHKSGQSSSNEVDEDANFKNRVDS 131
Query: 194 LKGYRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGF 253
L+ + +R G++S + L + ++ S YL ++L +I++AV LFEIASP+++SE +
Sbjct: 132 LQ-VQIVRGNTGIKSYQSLLDMHTDDQASGFYLTNLLAAINIAVLLFEIASPVKSSENEY 190
Query: 254 FSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFF 313
SLPLLYGAKIN LIL GEWWRL+TPM LHSG H+AL CWALL FGP+VC++YG TFF
Sbjct: 191 LSLPLLYGAKINNLILSGEWWRLLTPMCLHSGFLHIALGCWALLLFGPRVCRAYGQMTFF 250
Query: 314 LIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
LIY LGGI GNL+SF+HTPE TV GTGPVF++IGAWL+YQ QNK +I KDVSE MF +A+
Sbjct: 251 LIYILGGICGNLSSFVHTPEITVCGTGPVFSLIGAWLVYQSQNKQVIDKDVSESMFWQAV 310
Query: 374 LSTALSFIISNFGPVDTW 391
++ ALSF++S FG +D W
Sbjct: 311 IAAALSFLLSIFGRIDNW 328
>gi|302758242|ref|XP_002962544.1| hypothetical protein SELMODRAFT_438240 [Selaginella moellendorffii]
gi|300169405|gb|EFJ36007.1| hypothetical protein SELMODRAFT_438240 [Selaginella moellendorffii]
Length = 1043
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 173/310 (55%), Gaps = 27/310 (8%)
Query: 111 LESYLAKL-------KDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDA 163
L+SY +KL KD +++NS+ S IE+ + SG++ LD+L+AY K+ A
Sbjct: 533 LDSYFSKLQNKSSAAKDVAVENSASSGAVIEDSKNTSGDLQG---LDALNAYFDKMQVPA 589
Query: 164 KFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSN 223
+ + V + + L + KD ++L D A + +N
Sbjct: 590 TKDVPKEVPKAPVEEDEKV--------LSFLHELDKSFQKDDAKTLPTDFAPRNASTFTN 641
Query: 224 LYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
+++ ++ AVFLF +ASP++ E LP L GAKIN LI G+WWRLVTPMFLH
Sbjct: 642 -----VIIGVNAAVFLFGLASPVQTPEMVEVPLPFLVGAKINSLIADGQWWRLVTPMFLH 696
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
GL H+ L WALL+FGP V YGP F +IY LGGI GN+TS+ TP PTVGGTGP++
Sbjct: 697 DGLIHIGLGAWALLSFGPGVESVYGPAGFCMIYLLGGIFGNITSYFLTPAPTVGGTGPLY 756
Query: 344 AIIGAWLIYQFQNKDLIAKD----VSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 399
A++ AW +Y QN+ K+ ++ + QK ++ +AL +++ P D W H+GAA
Sbjct: 757 ALVAAWAVYIIQNRQSFGKEMQAGITSDVIQKILVMSALHLALTDALPADNWTHVGAAAV 816
Query: 400 GIIYGFLTCP 409
G ++G L P
Sbjct: 817 GTLFGLLATP 826
>gi|302758654|ref|XP_002962750.1| hypothetical protein SELMODRAFT_438082 [Selaginella moellendorffii]
gi|300169611|gb|EFJ36213.1| hypothetical protein SELMODRAFT_438082 [Selaginella moellendorffii]
Length = 1043
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 172/310 (55%), Gaps = 27/310 (8%)
Query: 111 LESYLAKL-------KDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDA 163
L+SY +KL KD +++NS+ S IE+ + S ++ LD+L+AY K+ A
Sbjct: 533 LDSYFSKLQNKSSAAKDVAVENSASSGAVIEDSKNTSRDLQG---LDALNAYFDKMQVPA 589
Query: 164 KFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSN 223
+ + V + + L + KD ++L D A + +N
Sbjct: 590 TKDVPKEVPKAPVEEDEKV--------LSFLHELDKSFQKDDAKTLPTDFAPRNASTFTN 641
Query: 224 LYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
+++ ++ AVFLF +ASP++ E LP L GAKIN LI G+WWRLVTPMFLH
Sbjct: 642 -----VIIGVNAAVFLFGLASPVQTPEMVEVPLPFLVGAKINSLIADGQWWRLVTPMFLH 696
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
GL H+ L WALL+FGP V YGP F +IY LGGI GN+TS+ TP PTVGGTGP++
Sbjct: 697 DGLIHIGLGAWALLSFGPGVESVYGPAGFCMIYLLGGIFGNITSYFLTPAPTVGGTGPLY 756
Query: 344 AIIGAWLIYQFQNKDLIAKD----VSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 399
A++ AW +Y QN+ K+ ++ + QK ++ +AL +++ P D W H+GAA
Sbjct: 757 ALVAAWAVYIVQNRQSFGKEMQAGITSDVIQKILVMSALHLALTDALPADNWTHVGAAAV 816
Query: 400 GIIYGFLTCP 409
G ++G L P
Sbjct: 817 GTLFGLLATP 826
>gi|168002718|ref|XP_001754060.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694614|gb|EDQ80961.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 579
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 206/362 (56%), Gaps = 35/362 (9%)
Query: 132 EIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF-----------------STDQTTERN 174
E ++ S++ + K+ LD+LDAY GKL K + ++ E N
Sbjct: 201 EDDKFKSKTDAHSDKSGLDALDAYFGKLREPEKIAGSYEDIKKAVEEGKQSTVNEEKEVN 260
Query: 175 LVAAQLSISKSSKRGY------MGKL-KGYRELRNKDGVRSLERDLALQRTE-----ETS 222
+ A S + + + M +L K R+ + S E + +Q + T
Sbjct: 261 IKVAGASETSAEEDEELEYRELMKELEKALRQQAESGKLLSAENENFMQGSSWGLQAATP 320
Query: 223 NLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFL 282
N Y ++ LV++++AV+LF +ASP+ SLP LYGAK+NELI+ G+WWRLVTPMFL
Sbjct: 321 NSYFVNGLVALNIAVYLFGLASPLEVPGMVDASLPYLYGAKVNELIVNGDWWRLVTPMFL 380
Query: 283 HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPV 342
HSGL H+ LS WALL FGP V +YG F +IY LGG GNL SF HTP+ TVGG+GP+
Sbjct: 381 HSGLLHLGLSTWALLEFGPAVESAYGTLGFTMIYLLGGAYGNLLSFFHTPQGTVGGSGPI 440
Query: 343 FAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
FA++ AW++Y +N+D+I DV+ + +K I+ TA+++ + N PVD W HLGAA +G+
Sbjct: 441 FALMAAWVVYILRNRDIIGLDVAGEIVRKVIIFTAITYALCNSFPVDDWTHLGAAISGLS 500
Query: 403 YGFLTCPLVQLG------DASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVF 456
+G LTCPLV++ + + + E L+ + +P + L+VF + V + + V
Sbjct: 501 FGLLTCPLVRVNVHVEDVNDENDDDAMESYLLLNEGIHPYRLLLVFGLSVAVFFALYSVG 560
Query: 457 EP 458
P
Sbjct: 561 VP 562
>gi|168053660|ref|XP_001779253.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669352|gb|EDQ55941.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 184
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/184 (53%), Positives = 135/184 (73%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
LV+++VAV+LF +ASP SLP LYGAK+NELI+ GEWWRL+TP FLHSG H+
Sbjct: 1 LVALNVAVYLFGLASPQEVPGMVDASLPYLYGAKVNELIVNGEWWRLITPTFLHSGFLHL 60
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAW 349
LS WALL FGP V ++G F IY LGG+ GNL SF HTP+ TVGG+GP+FA++ AW
Sbjct: 61 GLSTWALLEFGPAVGSAFGTLGFSAIYLLGGLYGNLLSFFHTPQGTVGGSGPIFALMAAW 120
Query: 350 LIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCP 409
++Y +N+D+I DV+ + +K ++ TA+++ + N PVD W HLGAA +G+I+G LTCP
Sbjct: 121 VVYILRNRDIIGLDVAGEIIRKVVIFTAITYALCNSFPVDDWTHLGAAISGLIFGLLTCP 180
Query: 410 LVQL 413
LV++
Sbjct: 181 LVRV 184
>gi|302805494|ref|XP_002984498.1| hypothetical protein SELMODRAFT_445901 [Selaginella moellendorffii]
gi|300147886|gb|EFJ14548.1| hypothetical protein SELMODRAFT_445901 [Selaginella moellendorffii]
Length = 459
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 134/205 (65%), Gaps = 2/205 (0%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 285
++S +V I++ V++F +A+ + +E G L L GAK+N+LI+ GEWWRL+TP FLHSG
Sbjct: 226 VVSTIVGINIGVYIFGLATT-QQTENGM-DLAFLQGAKVNDLIVAGEWWRLITPTFLHSG 283
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAI 345
L H+ LSCWA ++FGP V YG LIY LGG GN+ SFL T +PTVGGTG VFA+
Sbjct: 284 LLHLFLSCWATISFGPLVESLYGSIGLVLIYLLGGAMGNVASFLQTSQPTVGGTGAVFAM 343
Query: 346 IGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGF 405
I +W+I+ +NK+ + + + QK ++ + L+ ++ N PVD W H+G A GI++G
Sbjct: 344 ICSWIIFLVKNKEAVRTFDTGELLQKVLVLSGLTVLVGNELPVDAWTHVGGALVGILFGA 403
Query: 406 LTCPLVQLGDASSRNSQEEGITLIR 430
+ P Q+ AS +S + +TL R
Sbjct: 404 VASPWYQITSASQLDSSKTDLTLER 428
>gi|115445857|ref|NP_001046708.1| Os02g0326700 [Oryza sativa Japonica Group]
gi|46390267|dbj|BAD15696.1| rhomboid family protein-like [Oryza sativa Japonica Group]
gi|46390870|dbj|BAD16387.1| rhomboid family protein-like [Oryza sativa Japonica Group]
gi|113536239|dbj|BAF08622.1| Os02g0326700 [Oryza sativa Japonica Group]
gi|215694311|dbj|BAG89304.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 347
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 141/246 (57%), Gaps = 25/246 (10%)
Query: 119 KDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNT-DAK--FSTDQTTER-- 173
KDD SS S E E S + L +L Y KLNT DA+ +S QT ++
Sbjct: 76 KDDEGSCSSRISDEDNETLSNASRKMEVNHLGALRCYFSKLNTEDAQKPYSFHQTNKQRT 135
Query: 174 -----NLVAAQLSISKSSKRGYMGKL-----------KGYRELRNKDGVRSLERD----L 213
N+ A ++ R + KGY +D L D L
Sbjct: 136 GPLSTNIEEANMATDYGDFRNTLESFEINFNRRKKGTKGYLNTAVEDYTNYLIFDEKNFL 195
Query: 214 ALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEW 273
+Q+ ++TS+ L ++L +I++AV LFEIASP+RNS+ SLPL+YGAKIN+LIL GEW
Sbjct: 196 DMQQDDQTSSFCLTNLLAAINIAVLLFEIASPVRNSDIENLSLPLMYGAKINDLILSGEW 255
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL+TPM LHSG H+AL CW LL FGP+V ++YG TF L+Y LGG+ GNLTS+LHT E
Sbjct: 256 WRLLTPMCLHSGFLHIALGCWVLLIFGPRVSRAYGQTTFLLMYILGGVCGNLTSYLHTSE 315
Query: 334 PTVGGT 339
TV GT
Sbjct: 316 LTVCGT 321
>gi|302782513|ref|XP_002973030.1| hypothetical protein SELMODRAFT_413432 [Selaginella moellendorffii]
gi|300159631|gb|EFJ26251.1| hypothetical protein SELMODRAFT_413432 [Selaginella moellendorffii]
Length = 432
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 114/169 (67%), Gaps = 2/169 (1%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 285
++S +V I++ V++F +A+ + +E G L L GAK+N+LI+ GEWWRL+TP FLHSG
Sbjct: 226 VVSTIVGINIGVYIFGLAT-TQQTENGM-DLAFLQGAKVNDLIVAGEWWRLITPTFLHSG 283
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAI 345
L H+ LSCWA ++FGP V YG LIY LGG GN+ SFL T +PTVGGTG VFA+
Sbjct: 284 LLHLFLSCWATISFGPLVESLYGSIGLVLIYLLGGAMGNVASFLQTSQPTVGGTGAVFAM 343
Query: 346 IGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 394
I +W+I+ +NK+ + + + QK ++ + L+ ++ N PVD W H+
Sbjct: 344 ICSWIIFLVKNKEAVRTFDTGELLQKVLVLSGLTVLVGNELPVDAWTHV 392
>gi|452975048|gb|EME74867.1| rhomboid protease YggP [Bacillus sonorensis L12]
Length = 512
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 96/179 (53%), Gaps = 12/179 (6%)
Query: 235 VAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCW 294
+ L E+A +N+E + +GAK N LIL GEWWR VTP+ LH GL H+ + +
Sbjct: 194 IMFLLLELAGGSQNTE-----TLIRFGAKENSLILAGEWWRFVTPIILHIGLIHLMFNTF 248
Query: 295 ALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQF 354
ALL+ G + +G F F +IY G+ G++ SFL +P P+ G +G +F +GA L F
Sbjct: 249 ALLSVGAAAERVFGSFRFLIIYITAGVFGSIGSFLFSPYPSAGASGAIFGCLGALLFLAF 308
Query: 355 QNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
N+ K + + IL+ L F +SN +D H+G G++ G L+ V L
Sbjct: 309 SNRKAFLKTIGTNIMVMIILNLGLGFAVSN---IDNAGHIG----GLVGGLLSAMAVGL 360
>gi|311069089|ref|YP_003974012.1| membrane endopeptidase [Bacillus atrophaeus 1942]
gi|419820266|ref|ZP_14343877.1| membrane endopeptidase [Bacillus atrophaeus C89]
gi|310869606|gb|ADP33081.1| membrane endopeptidase [Bacillus atrophaeus 1942]
gi|388475418|gb|EIM12130.1| membrane endopeptidase [Bacillus atrophaeus C89]
Length = 511
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 100/185 (54%), Gaps = 12/185 (6%)
Query: 235 VAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCW 294
+ FL EI N+E + +GAK N LI GEWWRLVTP+ LH GL H+A + +
Sbjct: 195 IMFFLLEINGGSTNTE-----TLVAFGAKENSLIAAGEWWRLVTPIVLHIGLAHLAFNTF 249
Query: 295 ALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQF 354
AL + G V K YG F LIY L G++G++ SF+ +P P+ G +G +F +GA L
Sbjct: 250 ALWSIGTAVEKIYGSGRFLLIYLLAGVTGSIASFVFSPYPSAGASGAIFGCLGALLYLAV 309
Query: 355 QNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
N+ L K + + I++ F +SN +D H+G G+I GFL + L
Sbjct: 310 SNRKLFLKTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFLAAGALGLP 362
Query: 415 DASSR 419
+ S+R
Sbjct: 363 NTSAR 367
>gi|335041089|ref|ZP_08534206.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
gi|334179066|gb|EGL81714.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
Length = 577
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 85/154 (55%), Gaps = 7/154 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LI+ GE+WRLVTPMFLH G++H+ + AL G V + +G F F IY
Sbjct: 236 YGAKWNPLIIEGEYWRLVTPMFLHIGIWHLMFNSLALYFLGGAVERIFGSFRFLWIYMFA 295
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GISG L SF TP G +G +F GA L + + ++L + + + I + A+
Sbjct: 296 GISGTLASFAFTPNLAAGASGAIFGCFGALLYFGLKRRNLFFRTIGMDIIFILIFNLAIG 355
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
FII +D + H+G G+I GFL +V L
Sbjct: 356 FIIPM---IDNYGHIG----GLIGGFLAAAMVNL 382
>gi|326792345|ref|YP_004310166.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Clostridium lentocellum DSM 5427]
gi|326543109|gb|ADZ84968.1| Peptidase S54, rhomboid domain [Clostridium lentocellum DSM 5427]
Length = 518
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 106/188 (56%), Gaps = 16/188 (8%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 285
LI+I + + +A+ L+E R S + L + +GAK+N LIL GE+WR +TP+FLH
Sbjct: 188 LIAINILVYLALVLYE-----RTSGISYGQLIIQFGAKVNNLILEGEYWRFITPIFLHGS 242
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAI 345
L H+ ++C++L G V + YG F Y + GI GNL SFL P P+VG +G +F +
Sbjct: 243 LMHLLVNCYSLYIIGSLVERLYGRGRFITSYLIAGILGNLCSFLFVPGPSVGASGAIFGL 302
Query: 346 IGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP--VDTWAHLGAAFTGIIY 403
+G L + + + L K F +I++T L ++ F +D +AHLG G+I
Sbjct: 303 MGILLYFGLE-RPLQFK----VYFGSSIITTILINLVYGFSSTGIDNFAHLG----GLIG 353
Query: 404 GFLTCPLV 411
GFL ++
Sbjct: 354 GFLAIGIL 361
>gi|452991452|emb|CCQ97320.1| putative Rhomboid protease [Clostridium ultunense Esp]
Length = 400
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 108/197 (54%), Gaps = 15/197 (7%)
Query: 229 ILVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
+LV+I++ VFL+ + +N E + +GAK N I GEWWRL+T +FLHSG F
Sbjct: 197 VLVAINLLVFLWLTVNGGSQNPE-----TLIRFGAKYNPAIKAGEWWRLITSIFLHSGFF 251
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
HVAL+ AL G V + YG F LIY + G+ G++ SFL++ +VG +G ++ + G
Sbjct: 252 HVALNSIALYYLGLLVERMYGRARFLLIYFMAGLLGSVASFLYSDTVSVGSSGAIYGLFG 311
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFL 406
A L + + +DL + + + + L+ +IS P +D +AHLG G++ GFL
Sbjct: 312 ALLFFGMRRRDLFFRSFGKDL----LFIIGLNLLISVLVPSIDLYAHLG----GLVGGFL 363
Query: 407 TCPLVQLGDASSRNSQE 423
L A R Q+
Sbjct: 364 AAGGTGLPQAPKRGWQQ 380
>gi|374297549|ref|YP_005047740.1| hypothetical protein [Clostridium clariflavum DSM 19732]
gi|359827043|gb|AEV69816.1| putative membrane protein [Clostridium clariflavum DSM 19732]
Length = 517
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 255 SLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFL 314
SL + +GAK N LI GE+WR +TP+FLH+ L H+ ++C +L FG V YG F
Sbjct: 214 SLFIPFGAKENSLIFAGEYWRFLTPIFLHADLEHLIMNCLSLFVFGRIVEGMYGHKKFVF 273
Query: 315 IYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL 374
IY + GI G++ SF+ +P VG +G +F ++GA L + +N L K + I+
Sbjct: 274 IYFMAGIMGSIASFMFSPHSAVGASGAIFGLMGALLYFSVENPALFKKYFGNSILLMVII 333
Query: 375 STALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSR 419
+ FI +D + H+G G+I GFL +V++ + ++
Sbjct: 334 NLVYGFIRPG---IDNYGHIG----GLIGGFLASGIVKITKSPNK 371
>gi|423682997|ref|ZP_17657836.1| integral membrane protein GluP [Bacillus licheniformis WX-02]
gi|383439771|gb|EID47546.1| integral membrane protein GluP [Bacillus licheniformis WX-02]
Length = 512
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 74/125 (59%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N L+L GEWWRLVTP+ LH GL H+ + +ALL+ G + +G F F +IY
Sbjct: 214 FGAKENSLLLAGEWWRLVTPIVLHIGLVHLMFNTFALLSVGAAAERVFGSFRFLVIYISA 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI G++ SFL +P P+ G +G +F +GA L F N+ K + + IL+ L
Sbjct: 274 GIFGSIGSFLFSPYPSAGASGAIFGCLGALLYLAFSNRKAFLKTIGTNIIVIIILNLGLG 333
Query: 380 FIISN 384
F ISN
Sbjct: 334 FTISN 338
>gi|52081023|ref|YP_079814.1| integral membrane protein GluP [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|319645019|ref|ZP_07999252.1| YqgP protein [Bacillus sp. BT1B_CT2]
gi|404489905|ref|YP_006714011.1| rhomboid protease YggP [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52004234|gb|AAU24176.1| TPR motif integral membrane protein GluP [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52348902|gb|AAU41536.1| rhomboid protease YggP [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317392828|gb|EFV73622.1| YqgP protein [Bacillus sp. BT1B_CT2]
Length = 512
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 74/125 (59%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N L+L GEWWRLVTP+ LH GL H+ + +ALL+ G + +G F F +IY
Sbjct: 214 FGAKENSLLLAGEWWRLVTPIVLHIGLVHLMFNTFALLSVGAAAERVFGSFRFLVIYISA 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI G++ SFL +P P+ G +G +F +GA L F N+ K + + IL+ L
Sbjct: 274 GIFGSIGSFLFSPYPSAGASGAIFGCLGALLYLAFSNRKAFLKTIGTNIIVIIILNLGLG 333
Query: 380 FIISN 384
F ISN
Sbjct: 334 FTISN 338
>gi|433462194|ref|ZP_20419783.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432189083|gb|ELK46216.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 510
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 102/190 (53%), Gaps = 13/190 (6%)
Query: 225 YLISILVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
++ +L++++VA+FL E A N E + YGAK N I+ GEWWRLVT MFLH
Sbjct: 182 FVTYLLLAVNVALFLLLEWAGGSTNVE-----TLIEYGAKFNPAIMEGEWWRLVTSMFLH 236
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
GL H+ ++ AL G V + YG + + +IY L G+ G++ SF+ P+ + G +G +F
Sbjct: 237 IGLIHLMMNMLALYYIGTAVERIYGSWRYIIIYLLAGVFGSVASFMLNPQVSAGASGAIF 296
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
+ GA L + N+ L + + + L+ A + +D AH+G G+I
Sbjct: 297 GLFGALLYFGVWNRRLFFQTMGWNLLFIIGLNIAFGLFVPQ---IDNGAHMG----GLIG 349
Query: 404 GFLTCPLVQL 413
GF+ + QL
Sbjct: 350 GFIAAAISQL 359
>gi|296333354|ref|ZP_06875807.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305675141|ref|YP_003866813.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296149552|gb|EFG90448.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413385|gb|ADM38504.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 506
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 238 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL 297
FL EI N+E + +GAK N LI GEWWRL+TP+ LH G+ H+A + AL
Sbjct: 192 FLLEINGGSTNTE-----TLVAFGAKENSLIAAGEWWRLLTPIVLHIGIAHLAFNTLALW 246
Query: 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
+ G V + YG F LIY GI+G++ SF+ +P P+ G +G +F +GA L N+
Sbjct: 247 SVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYIALSNR 306
Query: 358 DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDAS 417
+ + + + I++ F +SN +D H+G G+I GF + L A
Sbjct: 307 KMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFAAAALGLPKAG 359
Query: 418 S 418
+
Sbjct: 360 A 360
>gi|321311972|ref|YP_004204259.1| membrane endopeptidase [Bacillus subtilis BSn5]
gi|320018246|gb|ADV93232.1| membrane endopeptidase [Bacillus subtilis BSn5]
Length = 507
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 238 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL 297
FL EI N+E + +GAK N LI GEWWRL+TP+ LH G+ H+A + AL
Sbjct: 192 FLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALW 246
Query: 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
+ G V + YG F LIY GI+G++ SF+ +P P+ G +G +F +GA L N+
Sbjct: 247 SVGTAVERMYGSRRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNR 306
Query: 358 DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDAS 417
+ + + + I++ F +SN +D H+G G+I GF + L A
Sbjct: 307 KMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFAAAALGLPKAG 359
Query: 418 S 418
+
Sbjct: 360 A 360
>gi|398304447|ref|ZP_10508033.1| hypothetical protein BvalD_02972 [Bacillus vallismortis DV1-F-3]
Length = 507
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 238 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL 297
FL EI N+E + +GAK N LI GEWWRL+TP+ LH G+ H+A + AL
Sbjct: 192 FLLEIKGGSTNTE-----TLVAFGAKENSLIAAGEWWRLLTPIVLHIGIVHLAFNTLALW 246
Query: 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
+ G +V + YG F LIY GI+G++ SF+ +P P+ G +G +F +GA L N+
Sbjct: 247 SVGTEVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNR 306
Query: 358 DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDAS 417
+ + + + I++ F +S+ +D H+G G+I GF + L A
Sbjct: 307 KMFFRTIGTNIIVIIIINLGFGFAVSH---IDNSGHIG----GLIGGFFAAAALGLPQAG 359
Query: 418 S 418
+
Sbjct: 360 A 360
>gi|221310411|ref|ZP_03592258.1| hypothetical protein Bsubs1_13621 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314734|ref|ZP_03596539.1| hypothetical protein BsubsN3_13537 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319657|ref|ZP_03600951.1| hypothetical protein BsubsJ_13458 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323934|ref|ZP_03605228.1| hypothetical protein BsubsS_13592 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767560|ref|NP_390367.2| membrane endopeptidase [Bacillus subtilis subsp. subtilis str. 168]
gi|418032339|ref|ZP_12670822.1| hypothetical protein BSSC8_17660 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452915762|ref|ZP_21964388.1| rhomboid protease gluP [Bacillus subtilis MB73/2]
gi|251757277|sp|P54493.2|GLUP_BACSU RecName: Full=Rhomboid protease GluP; AltName: Full=Intramembrane
serine protease
gi|225185188|emb|CAB14418.2| membrane endopeptidase [Bacillus subtilis subsp. subtilis str. 168]
gi|351471202|gb|EHA31323.1| hypothetical protein BSSC8_17660 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407959733|dbj|BAM52973.1| membrane endopeptidase [Bacillus subtilis BEST7613]
gi|407965308|dbj|BAM58547.1| membrane endopeptidase [Bacillus subtilis BEST7003]
gi|452116110|gb|EME06506.1| rhomboid protease gluP [Bacillus subtilis MB73/2]
Length = 507
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 238 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL 297
FL EI N+E + +GAK N LI GEWWRL+TP+ LH G+ H+A + AL
Sbjct: 192 FLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALW 246
Query: 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
+ G V + YG F LIY GI+G++ SF+ +P P+ G +G +F +GA L N+
Sbjct: 247 SVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNR 306
Query: 358 DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDAS 417
+ + + + I++ F +SN +D H+G G+I GF + L A
Sbjct: 307 KMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFAAAALGLPKAG 359
Query: 418 S 418
+
Sbjct: 360 A 360
>gi|402776749|ref|YP_006630693.1| membrane endopeptidase [Bacillus subtilis QB928]
gi|402481929|gb|AFQ58438.1| Membrane endopeptidase [Bacillus subtilis QB928]
Length = 505
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 238 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL 297
FL EI N+E + +GAK N LI GEWWRL+TP+ LH G+ H+A + AL
Sbjct: 190 FLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALW 244
Query: 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
+ G V + YG F LIY GI+G++ SF+ +P P+ G +G +F +GA L N+
Sbjct: 245 SVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNR 304
Query: 358 DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDAS 417
+ + + + I++ F +SN +D H+G G+I GF + L A
Sbjct: 305 KMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFAAAALGLPKAG 357
Query: 418 S 418
+
Sbjct: 358 A 358
>gi|430759046|ref|YP_007208970.1| hypothetical protein A7A1_3554 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430023566|gb|AGA24172.1| Hypothetical protein YqgP [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 507
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 238 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL 297
FL EI N+E + +GAK N LI GEWWRL+TP+ LH G+ H+A + AL
Sbjct: 192 FLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALW 246
Query: 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
+ G V + YG F LIY GI+G++ SF+ +P P+ G +G +F +GA L N+
Sbjct: 247 SVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNR 306
Query: 358 DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDAS 417
+ + + + I++ F +SN +D H+G G+I GF + L A
Sbjct: 307 KMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFAAAALGLPKAG 359
Query: 418 S 418
+
Sbjct: 360 A 360
>gi|359414482|ref|ZP_09206947.1| Rhomboid family protein [Clostridium sp. DL-VIII]
gi|357173366|gb|EHJ01541.1| Rhomboid family protein [Clostridium sp. DL-VIII]
Length = 332
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 110/205 (53%), Gaps = 7/205 (3%)
Query: 210 ERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLY-GAKINELI 268
ER + E + L IL+ I++ VFL + + I + F + L+Y GAKIN LI
Sbjct: 127 ERKNGQSKKEHKNYNILTFILIGINIVVFL--LTAFISGNIFDIDTRVLIYFGAKINILI 184
Query: 269 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF 328
GE WRL+T FLHSGL H+ + ++L GPQ+ + YG + +IY + I+ +++S+
Sbjct: 185 DHGEIWRLLTCAFLHSGLIHIVCNMYSLYIIGPQIEQIYGIRKYLIIYLISCITASISSY 244
Query: 329 LHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP 387
P +G +G +F ++GA L + ++ I K + Q ++ + I N
Sbjct: 245 FLNPNGIAIGASGGIFGLMGALLAFALIERNRIQKKFLSSLLQIIAINLFIGLSIKN--- 301
Query: 388 VDTWAHLGAAFTGIIYGFLTCPLVQ 412
+D +AH+G GI+ G+++ LV+
Sbjct: 302 IDNFAHIGGLVGGIVSGYISYILVR 326
>gi|365157863|ref|ZP_09354108.1| hypothetical protein HMPREF1015_00268 [Bacillus smithii 7_3_47FAA]
gi|363622533|gb|EHL73692.1| hypothetical protein HMPREF1015_00268 [Bacillus smithii 7_3_47FAA]
Length = 397
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 22/222 (9%)
Query: 197 YRELRNKDGVRSLERDL---ALQRTEETSNL------YLISILVSIDVAVFLF-EIASPI 246
+R+ + V+SLE+ + A+Q+ E+ NL + + +++ VAVFL EI
Sbjct: 147 FRDAYEESEVQSLEQLVLTGAVQKEEKDRNLLEYGNPFFTYLFIAVQVAVFLLLEINGGS 206
Query: 247 RNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKS 306
N++ + +GAK N LIL GEWWR TP+FLH G+ H+ ++ AL G V K
Sbjct: 207 TNTD-----TLIRFGAKFNPLILDGEWWRFFTPIFLHIGVLHLLMNTMALYYLGTMVEKI 261
Query: 307 YGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSE 366
+G + F IY G G++ SF+ TP + G +G +F GA L + F N+ L + +
Sbjct: 262 FGRWRFLWIYLFSGFLGSVASFVFTPNLSAGASGAIFGCFGALLFFGFVNRSLFFRTIGM 321
Query: 367 RMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ I++ F + +D H+G G+I GFL
Sbjct: 322 NVIVVIIINLIFGFTVPG---IDNSGHIG----GLIGGFLAA 356
>gi|384176109|ref|YP_005557494.1| YqgP [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349595333|gb|AEP91520.1| YqgP [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 507
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 238 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL 297
FL EI N+E + +GAK N LI GEWWRL+TP+ LH G+ H+A + AL
Sbjct: 192 FLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALW 246
Query: 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
+ G V + YG F LIY GI+G++ SF+ +P P+ G +G +F +GA L N+
Sbjct: 247 SVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNR 306
Query: 358 DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDAS 417
+ + + + I++ F +SN +D H+G G+I GF + L A
Sbjct: 307 KMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFAAAALGLPKAR 359
Query: 418 S 418
+
Sbjct: 360 A 360
>gi|449094984|ref|YP_007427475.1| hypothetical protein C663_2371 [Bacillus subtilis XF-1]
gi|449028899|gb|AGE64138.1| hypothetical protein C663_2371 [Bacillus subtilis XF-1]
Length = 507
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 238 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL 297
FL EI N+E + +GAK N LI GEWWRL+TP+ LH G+ H+A + AL
Sbjct: 192 FLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALW 246
Query: 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
+ G V + YG F LIY GI+G++ SF+ +P P+ G +G +F +GA L N+
Sbjct: 247 SVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNR 306
Query: 358 DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDAS 417
+ + + + I++ F +SN +D H+G G+I GF + L A
Sbjct: 307 KMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFAAAALGLPKAR 359
Query: 418 S 418
+
Sbjct: 360 A 360
>gi|428279976|ref|YP_005561711.1| hypothetical protein BSNT_03714 [Bacillus subtilis subsp. natto
BEST195]
gi|291484933|dbj|BAI86008.1| hypothetical protein BSNT_03714 [Bacillus subtilis subsp. natto
BEST195]
Length = 507
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 238 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL 297
FL EI N+E + +GAK N LI GEWWRL+TP+ LH G+ H+A + AL
Sbjct: 192 FLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALW 246
Query: 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
+ G V + YG F LIY GI+G++ SF+ +P P+ G +G +F +GA L N+
Sbjct: 247 SVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNR 306
Query: 358 DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDAS 417
+ + + + I++ F +SN +D H+G G+I GF + L A
Sbjct: 307 KMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFAAAALGLPKAG 359
Query: 418 S 418
+
Sbjct: 360 A 360
>gi|443631783|ref|ZP_21115963.1| hypothetical protein BSI_10340 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443347898|gb|ELS61955.1| hypothetical protein BSI_10340 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 507
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 7/159 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N LI GEWWRL+TP+ LH G+ H+A + AL + G V + YG F LIY
Sbjct: 209 FGAKENSLIAAGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLLIYLAA 268
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI+G++ SF+ +P P+ G +G +F +GA L N+ + + + + I++
Sbjct: 269 GITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMFLRTIGTNIIVIIIINLGFG 328
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASS 418
F +SN +D H+G G+I GF + L A +
Sbjct: 329 FAVSN---IDNSGHIG----GLIGGFFAAAALGLPKAGA 360
>gi|229916284|ref|YP_002884930.1| rhomboid family protein [Exiguobacterium sp. AT1b]
gi|229467713|gb|ACQ69485.1| Rhomboid family protein [Exiguobacterium sp. AT1b]
Length = 350
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK+N LI GEWWRL+TPMFLH G FH A++ +AL + GP V + YG F +IY L
Sbjct: 174 FGAKVNPLIEQGEWWRLITPMFLHIGWFHFAINMFALWSLGPLVERMYGSIRFLIIYLLS 233
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI SF + + G +G +F ++GA L + +++ L K + +F L+ L+
Sbjct: 234 GILATSASFAFSESISAGASGALFGLVGALLYFGLRDRSLFMKTLGPPLFIMLGLNVGLA 293
Query: 380 FIISNFGPVDTWAHLGA 396
F++ +D +AH G
Sbjct: 294 FVLG--AGLDHFAHAGG 308
>gi|350266688|ref|YP_004877995.1| hypothetical protein GYO_2752 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599575|gb|AEP87363.1| YqgP [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 507
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 12/176 (6%)
Query: 238 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL 297
FL EI N+E + +GAK N LI GEWWRL+TP+ LH G+ H+A + AL
Sbjct: 192 FLLEINGGSTNTE-----TLVAFGAKENSLIAAGEWWRLLTPIVLHIGITHLAFNTLALW 246
Query: 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
+ G V + YG F LIY GI+G++ SF+ +P P+ G +G +F +GA L N+
Sbjct: 247 SVGTVVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNR 306
Query: 358 DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ + + + I++ F +SN +D H+G G+I GF + L
Sbjct: 307 KMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFAAAALGL 355
>gi|220929279|ref|YP_002506188.1| rhomboid family protein [Clostridium cellulolyticum H10]
gi|219999607|gb|ACL76208.1| Rhomboid family protein [Clostridium cellulolyticum H10]
Length = 519
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 114/216 (52%), Gaps = 14/216 (6%)
Query: 197 YRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVF-LFEIASPIRNSEFGFFS 255
Y+++ +D + ++D +Q ET +L I+++ ++ ++ L ++ S + +
Sbjct: 159 YKDI--EDVIEKRKKDFEIQSKAETP--WLTYIIIAFNIVMWGLLQLVSMRTGTAYQQQL 214
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
P +GAK+N LI+ G++WR ++PMFLH + H+A++C++L G QV K +G F I
Sbjct: 215 EP--FGAKVNNLIMEGQYWRFISPMFLHGDIVHLAVNCYSLYIIGSQVEKIFGRGRFLAI 272
Query: 316 YTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 375
Y + G G+ SF + +VG +G +F ++GA L + + L+ + I++
Sbjct: 273 YFVSGFIGSAASFAFSLNSSVGASGAIFGLVGAMLYFSLRRPALLKSSYGVNLITMLIIN 332
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
A F+ +D AH+G G + GFLT V
Sbjct: 333 LAYGFMNKR---IDNHAHIG----GFVGGFLTAGAV 361
>gi|1303863|dbj|BAA12519.1| YqgP [Bacillus subtilis]
Length = 507
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 13/191 (6%)
Query: 229 ILVSIDVAVF-LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
+ +++ + +F L EI N+E + +GAK N LI GEWWRL+TP+ LH G+
Sbjct: 182 LFIALQILMFSLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIGIA 236
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+A + AL + G V + YG F LIY GI+G++ SF+ +P P+ G +G +F +G
Sbjct: 237 HLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLG 296
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
A L N+ + + + + I++ F +SN +D H+G G+I GF
Sbjct: 297 ALLYVALSNRKMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFA 349
Query: 408 CPLVQLGDASS 418
+ L A +
Sbjct: 350 AAALGLPKAGA 360
>gi|386759084|ref|YP_006232300.1| membrane endopeptidase [Bacillus sp. JS]
gi|384932366|gb|AFI29044.1| membrane endopeptidase [Bacillus sp. JS]
Length = 503
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 238 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL 297
F+ EI N+E + +GAK N LI GEWWRL+TP+ LH G+ H+A + AL
Sbjct: 188 FVLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALW 242
Query: 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
+ G V + YG F LIY GI+G++ SF+ +P P+ G +G +F +GA L N+
Sbjct: 243 SVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNR 302
Query: 358 DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDAS 417
+ + + + I++ F +SN +D H+G G+I GF + L A
Sbjct: 303 KMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFAAAALGLPKAG 355
Query: 418 S 418
+
Sbjct: 356 A 356
>gi|452819642|gb|EME26697.1| rhomboid family protein [Galdieria sulphuraria]
Length = 371
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 109/207 (52%), Gaps = 14/207 (6%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ ++ VFL ++A+ + LL GAK+NELI G+ +RL+TP+FLH + H
Sbjct: 167 ILLVTNIVVFLLQMATA---------NQLLLMGAKVNELISSGQLYRLLTPIFLHGNIAH 217
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 348
+ ++C++L + GP V + +G F +Y G G + SF + P++G +G +F ++G
Sbjct: 218 LMVNCYSLYSLGPVVERCFGSHRFIGLYLFSGFFGCIASFFFSKNPSLGASGAIFGLVGG 277
Query: 349 WLIYQFQNKDLIAKDVSERMF---QKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGF 405
+ +Y +++ L+ + +F Q I + +S + +D W HLG G+ Y +
Sbjct: 278 FAVYLKRHQYLLGETSRLGLFSIAQSLIFNILMS--LQRGSRIDNWGHLGGFLGGVFYSY 335
Query: 406 LTCPLVQLGDASSRNSQEEGITLIRQY 432
L P + SR + +I+++
Sbjct: 336 LFGPNFERKRIGSRGVYLQDRPMIKRW 362
>gi|345022094|ref|ZP_08785707.1| hypothetical protein OTW25_12319 [Ornithinibacillus scapharcae
TW25]
Length = 517
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LIL GEWWR+VT MFLH GLFH + L FG K YG FF IY L
Sbjct: 216 YGAKFNPLILDGEWWRVVTSMFLHIGLFHFISNMLFLYYFGSLAEKIYGSLRFFFIYMLA 275
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI+G++ SF + G +G ++ + GA++ + +K + + + + + ++ L
Sbjct: 276 GIAGSVASFAFVTNLSAGASGALYGLFGAFIYFGLFHKKIFFRTIGKDILMLLGINIVLG 335
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
F++ +D AH+G G++ GF+ +V
Sbjct: 336 FVLPQ---LDVTAHMG----GLVAGFIAAGIVHF 362
>gi|307110920|gb|EFN59155.1| hypothetical protein CHLNCDRAFT_138007 [Chlorella variabilis]
Length = 247
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 7/140 (5%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
++G K+N L++ G+WWRL+TP FLH L H+A++C++L GP V + GP F L+Y
Sbjct: 62 VWGVKVNALVVAGQWWRLLTPAFLHGNLMHLAVNCYSLNNLGPPVEGAAGPPRFLLMYLS 121
Query: 319 GGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKD---VSERMFQKAIL 374
++GN+ SFL P+ ++G +G VF I GA +Y ++N+D+ K V +++Q +L
Sbjct: 122 AAVAGNVASFLGAPKSVSLGASGAVFGIGGALAMYFYRNRDIYGKTSDRVLRQLWQTLVL 181
Query: 375 STALSFIISNFGPVDTWAHL 394
+ + +D W H+
Sbjct: 182 NVVYGLSSTR---IDNWGHM 198
>gi|451821413|ref|YP_007457614.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787392|gb|AGF58360.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 332
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 7/174 (4%)
Query: 223 NLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLL-YGAKINELILVGEWWRLVTPMF 281
N L S L+ I++A+FL I + + S F + LL YGAK N LI G+ WRL+T F
Sbjct: 140 NKLLTSGLIVINIAIFL--ITAFLSGSLFDIDTKVLLDYGAKYNALIDKGQVWRLLTCAF 197
Query: 282 LHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTG 340
LHSGL H+A + ++L GPQ+ + YG + +IY + I+ + S+ +P+ +VG +G
Sbjct: 198 LHSGLIHIACNMYSLYIIGPQIEQIYGTLKYLIIYIVSSITASALSYFMSPDSISVGASG 257
Query: 341 PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 394
+F ++GA L + F ++ I K + Q I++ + ISN +D +AH+
Sbjct: 258 AIFGLMGALLAFAFIERNKIQKKYMSSLMQVIIINLFIGLSISN---IDNFAHI 308
>gi|212638734|ref|YP_002315254.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
gi|212560214|gb|ACJ33269.1| Serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
Length = 517
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LIL GEWWR TP+ LH G H+ ++ +AL GP V K YG F IY
Sbjct: 220 YGAKFNPLILQGEWWRFFTPIVLHIGFVHLFMNTFALYYLGPLVEKLYGSLRFLFIYLFA 279
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G +G+L SFL +P + G +G +F GA L + + + + + ++ A
Sbjct: 280 GFAGSLASFLFSPSVSAGASGAIFGCFGALLYFGKAKPHIFFRTIGMNVITVIGINLAFG 339
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
++ N +D H+G G+I GFL +V R Q
Sbjct: 340 LVVPN---IDNAGHIG----GLIGGFLAASIVHFPKERVRFGQ 375
>gi|354557489|ref|ZP_08976747.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550283|gb|EHC19720.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 325
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 105/184 (57%), Gaps = 11/184 (5%)
Query: 225 YLISILVSIDVAVF-LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
Y+ IL +I++ VF L +A N++ +L +L+GAK+NELIL G+ WRL T MF+H
Sbjct: 149 YVTIILAAINIIVFSLMTLAGGSTNTK----NL-ILFGAKVNELILQGQVWRLFTSMFIH 203
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
G H+A + +AL G + +G + F IY L G++G++TSFL T + G +G +F
Sbjct: 204 IGFLHLAFNIYALWILGSFSEERFGRWRFLFIYLLSGLAGSVTSFLFTDALSAGASGAIF 263
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGII 402
I+GA + Y ++N L + + ++ A++ I P +D +AHLG G+
Sbjct: 264 GILGALVPYSWKNPRLWKSGFGKNL----VVIIAINLGIGLIQPQIDIYAHLGGLLIGLA 319
Query: 403 YGFL 406
GFL
Sbjct: 320 IGFL 323
>gi|381182764|ref|ZP_09891551.1| rhomboid family membrane protein [Listeriaceae bacterium TTU
M1-001]
gi|380317332|gb|EIA20664.1| rhomboid family membrane protein [Listeriaceae bacterium TTU
M1-001]
Length = 516
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 100/200 (50%), Gaps = 15/200 (7%)
Query: 218 TEETSNL-----YLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGE 272
TEE N Y+ +++ +A FL+ ++ F+L + YGAK N LI GE
Sbjct: 170 TEEQQNARKEKPYITYAFIAMQIAYFLWVF---FKDMSLHTFTL-VEYGAKFNPLIYQGE 225
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP 332
WWR ++P+FLH+GL H+A +C + GP K YG + + +I +GGI+GN+ SF
Sbjct: 226 WWRFISPIFLHTGLMHIAANCLMIYIVGPWAEKIYGRWRYIVILLVGGIAGNIASFALNT 285
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG-PVDTW 391
VG + VFA+ GA L L AK + + + ++ II F +D
Sbjct: 286 NVAVGSSTAVFALFGALLYLVVLKPHLYAKTIGSSIAALVV----INLIIDIFAVGIDLA 341
Query: 392 AHLGAAFTG-IIYGFLTCPL 410
H+G G I G L+ PL
Sbjct: 342 GHVGGLVGGFFIAGALSLPL 361
>gi|320162418|ref|YP_004175643.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
gi|319996272|dbj|BAJ65043.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
Length = 258
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ + V V+L ++ S FG+ L L GAK N LI GE+WRL+TPMFLH L H
Sbjct: 41 ILLGVTVGVYLLQMLS---RPLFGY-DLLLAMGAKSNTLIQQGEFWRLITPMFLHVSLPH 96
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 348
+A + +AL FG + + YG F L+Y +GG+ G + S+L +PE + G + +F ++ A
Sbjct: 97 IAFNMYALYAFGVSLERHYGRRRFLLLYFIGGLGGVVLSYLLSPENSAGASTALFGVVAA 156
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
++ + N+ K+ ++ + ++ ++ +D W HLG G ++
Sbjct: 157 EAVFLYYNRRWFGKEAVSALWNTVFI-IGINLVLGLSPGIDNWGHLGGLIAGGVF 210
>gi|429764176|ref|ZP_19296501.1| peptidase, S54 family [Clostridium celatum DSM 1785]
gi|429188574|gb|EKY29452.1| peptidase, S54 family [Clostridium celatum DSM 1785]
Length = 324
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 4/151 (2%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
++ GAK+NELI G+ WRL+T FLH GL H+A + +AL G +V +YG + LIY
Sbjct: 170 VIMGAKVNELINHGQVWRLITCTFLHGGLAHIAFNMYALKIIGSEVEFAYGKIKYILIYL 229
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
+ G++ S++ +P +VG +G +F + GA L++ +N+ I K+ +F+ I++
Sbjct: 230 FSALGGSIFSYIFSPNSISVGASGAIFGLFGAMLVFGVKNRHRIGKNYVINLFKVVIINI 289
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
+ ISN +D H+G G I L
Sbjct: 290 FIGVTISN---IDNAGHIGGLVAGGIIALLV 317
>gi|255526224|ref|ZP_05393142.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296185575|ref|ZP_06853984.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
gi|255510064|gb|EET86386.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296049703|gb|EFG89128.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
Length = 323
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N LI GE++RL+T MFLH G+ H+ L+ +AL + GP + K YG + +IY L G
Sbjct: 174 GAKVNYLIARGEYYRLITCMFLHGGIMHLLLNMFALYSLGPFIEKIYGKTRYLIIYFLSG 233
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
I ++ S++ + ++G +G +F ++GA LI+ + KD I + + ++ + F
Sbjct: 234 IVSSIFSYMFSTAVSIGASGAIFGLLGAALIFAMKMKDRIGRGFITNIVSVIFINLFMGF 293
Query: 381 IISNFGPVDTWAHLGAAFTG 400
+SN VD + HLG G
Sbjct: 294 SMSN---VDNFGHLGGLIGG 310
>gi|384251749|gb|EIE25226.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 278
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 10/189 (5%)
Query: 225 YLISILVSIDVAVFLFEIASPIRNSEFG----FFSLPLLYGAKINELILVGEWWRLVTPM 280
YL L+ +++AV+ IA + F SL AK+NE + GE++RL+T
Sbjct: 79 YLAYALLFLNLAVYGAGIAVALTQGNDASNEWFLSL-----AKVNEKVASGEFYRLLTCT 133
Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTG 340
FLH+G+ H+ L+CWAL + GP+V G TF IY L G++G+ SFL + TVG +G
Sbjct: 134 FLHAGILHLGLNCWALYSIGPEVEGVMGYSTFAAIYVLSGLAGSTASFLFSDLITVGASG 193
Query: 341 PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTG 400
+F ++GA Y +N+ L + + I++ + S +D HLG FTG
Sbjct: 194 AIFGLLGATAGYFLRNRAL-QGSTQQLTYIAGIVALNIFLGASPGSMIDNSGHLGGLFTG 252
Query: 401 IIYGFLTCP 409
+ G++ P
Sbjct: 253 VALGYIMAP 261
>gi|163846340|ref|YP_001634384.1| rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222524105|ref|YP_002568576.1| rhomboid family protein [Chloroflexus sp. Y-400-fl]
gi|163667629|gb|ABY33995.1| Rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222447984|gb|ACM52250.1| Rhomboid family protein [Chloroflexus sp. Y-400-fl]
Length = 271
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 5/152 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAKINE I GE WRL+T +FLH+ L H+ + +AL GP+ + YG F +Y + G
Sbjct: 80 GAKINERIADGELWRLLTAVFLHANLIHIFFNGYALSVLGPETERFYGHGRFLALYLISG 139
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
+ G++ S+ +P P VG +G +F +IG ++ + N+ ++ + ++ + I++ AL
Sbjct: 140 LGGSIASYALSPAPAVGASGAIFGLIGGLGVFYYLNRRVLGEFGQNQV--RGIVAIALIN 197
Query: 381 IISNF---GPVDTWAHLGAAFTGIIYGFLTCP 409
++ F G +D W HLG +GI+ G P
Sbjct: 198 LLIGFAAQGVIDNWGHLGGLLSGIVIGVALAP 229
>gi|299823020|ref|ZP_07054906.1| possible Rhomboid protease [Listeria grayi DSM 20601]
gi|299816549|gb|EFI83787.1| possible Rhomboid protease [Listeria grayi DSM 20601]
Length = 512
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 23/195 (11%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWRL+TPMFLH+G H+A + L GP K YG + F LI +G
Sbjct: 214 WGGKFNPLIYAGEWWRLITPMFLHNGWMHIAANAVMLYIVGPWAEKIYGKWRFALILLIG 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G +GNL SF+ +VG + VFA+ GA L +L AK + + +++ +
Sbjct: 274 GFAGNLASFVLNNHLSVGASTSVFAVFGALLYLVVLKPNLYAKTIGTNVATLVVVNILIG 333
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSL 439
+ +D H+G G++ GFL I+L QY N ++L
Sbjct: 334 LFSAE---IDMMGHIG----GLVGGFLIAG---------------SISLPNQYFNWKRAL 371
Query: 440 IVFTIFVIILGSFIF 454
+ V+I G F++
Sbjct: 372 YSLSSLVLI-GLFLY 385
>gi|15613984|ref|NP_242287.1| hypothetical protein BH1421 [Bacillus halodurans C-125]
gi|10174038|dbj|BAB05140.1| BH1421 [Bacillus halodurans C-125]
Length = 514
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 103/211 (48%), Gaps = 26/211 (12%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N I GEWWRL++ MFLH G+ H ++ AL G V + YG FF+IY +
Sbjct: 218 FGAKYNPAIADGEWWRLLSSMFLHIGILHFMMNSLALFYLGGTVERIYGTSRFFIIYFIA 277
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G++G++ SF + G +G +F GA L + +K L + + + + + A
Sbjct: 278 GLAGSIASFALNAHVSAGASGAIFGCFGALLYFGTVHKKLFFRTMGSSVLLILVFNLAFG 337
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSL 439
FII +D AH+G G+I GFL +V L + R +RQ
Sbjct: 338 FIIP---MIDNGAHIG----GLIGGFLASAVVHLPNHRPR---------LRQLG-----F 376
Query: 440 IVFTIFVIILGSFIFVF----EPPLDTLALR 466
++ T+ +I GSF F F + D LAL+
Sbjct: 377 LLLTVLALI-GSFAFGFVNEHKAGADLLALQ 406
>gi|376261459|ref|YP_005148179.1| hypothetical protein [Clostridium sp. BNL1100]
gi|373945453|gb|AEY66374.1| putative membrane protein [Clostridium sp. BNL1100]
Length = 519
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 19/205 (9%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK+N LI+ G++WR PMFLH+ + H+A++C+++ G QV K +G F IY +
Sbjct: 217 FGAKVNNLIMEGQYWRFFAPMFLHADIVHLAVNCYSIYIIGSQVEKIFGRGRFLAIYFVS 276
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G G+ SF + +VG +G +F ++GA L + + L+ + +++ A
Sbjct: 277 GFIGSAASFAFSLNSSVGASGAIFGLVGAMLYFSLRRPALLKSSYGVNLITMLVINLAYG 336
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSL 439
F+ +D AH+G G + GFLT V RN G TL++ K+
Sbjct: 337 FMNKR---IDNHAHIG----GFVGGFLTTAAVY--SYQERN----GKTLLK------KAT 377
Query: 440 IVFTIFVIILGSFIFVFEPPLDTLA 464
+ + I +G + F ++ L+
Sbjct: 378 SILLVAAIAVGMLFYGFNNDINVLS 402
>gi|326202014|ref|ZP_08191884.1| Rhomboid family protein [Clostridium papyrosolvens DSM 2782]
gi|325987809|gb|EGD48635.1| Rhomboid family protein [Clostridium papyrosolvens DSM 2782]
Length = 519
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 87/152 (57%), Gaps = 7/152 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK+N LI+ G++WR TPMFLH+ + H+A++C+++ G QV K +G F IY +
Sbjct: 217 FGAKVNNLIMEGQYWRFFTPMFLHADIVHLAVNCYSIYIIGAQVEKIFGRGRFLAIYFVA 276
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G+ G+ SF + +VG +G +F ++GA L + + L+ + +++ L+
Sbjct: 277 GLIGSAASFAFSLNSSVGASGAIFGLVGAMLYFSLRRPALLKSSYGVNLITMIVIN--LA 334
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
+ + N +D AH+G G++ GFLT V
Sbjct: 335 YGVMN-KRIDNHAHIG----GLVGGFLTTGAV 361
>gi|386714819|ref|YP_006181142.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384074375|emb|CCG45868.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 510
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 29/228 (12%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+++++ +F+F + S S + +GAK N I+ GEWWR+ + MFLH GL H
Sbjct: 187 ILLAVNILLFMFVESQGSTTS----VSTLIEFGAKYNPAIMEGEWWRIGSSMFLHIGLLH 242
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 348
+ ++ AL G V + YG + F +IY L GI G + SF+ P G +G +F + GA
Sbjct: 243 LLMNMLALYYIGIAVERIYGTWRFSVIYLLAGIFGGVASFMLNPHVAAGASGAIFGLFGA 302
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
L + +++ L K + + L+ A ++ VD AH+G G+I GF+
Sbjct: 303 LLYFGVRHRQLFFKTMGWNLIFVIALNIAFGIMVPQ---VDNGAHMG----GLIGGFIAS 355
Query: 409 PLVQLGDASSRNSQE-EGITLIRQYANPCKSLIVFTIFVIILGSFIFV 455
L RN + +GI L T +++ILG+ F+
Sbjct: 356 AGFNL---PKRNDKWLQGIAL--------------TGYIVILGTMAFI 386
>gi|302872967|ref|YP_003841600.1| rhomboid family protein [Clostridium cellulovorans 743B]
gi|307686518|ref|ZP_07628964.1| Rhomboid family protein [Clostridium cellulovorans 743B]
gi|302575824|gb|ADL49836.1| Rhomboid family protein [Clostridium cellulovorans 743B]
Length = 326
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 204 DGVRSLERDLALQRTEETSNLY----LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLL 259
D +RS + R +NL+ + SI++ +++ +FL+ +S I F +L L+
Sbjct: 113 DSLRSSVENSLFSRKHIKNNLFSSNQITSIIIFLNIVIFLY--SSYINGDIFDINTLILV 170
Query: 260 -YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
GAK+N I+ GE++RL+T FLHSGL H+A + +AL G + + YG F LIY
Sbjct: 171 QLGAKVNSYIINGEFYRLLTCTFLHSGLMHIAFNMYALNNIGRLIERVYGWKKFILIYIF 230
Query: 319 GGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKD 363
G+SG+L SFL +P +VG +G +F + GA LI + K I +
Sbjct: 231 AGLSGSLASFLFSPYVSVGASGAIFGLFGAALIMGLKLKKYINSN 275
>gi|392393767|ref|YP_006430369.1| hypothetical protein Desde_2230 [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390524845|gb|AFM00576.1| putative membrane protein [Desulfitobacterium dehalogenans ATCC
51507]
Length = 275
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 10/219 (4%)
Query: 185 SSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVF-LFEIA 243
++KR ++ ++ Y E + G + ++ E YL L++I++ VF L +A
Sbjct: 58 TAKREHLNRVLSYLE-SDSQGSSVGDSSEVIRSKEAQRRPYLTYTLIAINLIVFALMTLA 116
Query: 244 SPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQV 303
+ + +L+GAK+N LI+ GE+WRL T MFLH G H+A + +AL GP
Sbjct: 117 GGSTRT-----GVLILFGAKVNALIIQGEYWRLFTSMFLHIGFLHLAFNLYALWALGPIA 171
Query: 304 CKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKD 363
+ G + +Y L GI G++ SFL T + G +G +F I+GA ++Y + L
Sbjct: 172 EELLGRIRYITVYILSGILGSVASFLFTDAISAGASGAIFGILGALVVYSRRKPFLWKSG 231
Query: 364 VSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
+ + +++ +L F + +D +AH+G +G++
Sbjct: 232 FGKSLAVVILINLSLGFFQTG---IDVYAHMGGLVSGML 267
>gi|138896022|ref|YP_001126475.1| hypothetical protein GTNG_2385 [Geobacillus thermodenitrificans
NG80-2]
gi|134267535|gb|ABO67730.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 386
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 7/163 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LI +GEWWR +TPMFLH G H+ + +AL G V + YG F LIYT
Sbjct: 211 YGAKFNPLIEMGEWWRFLTPMFLHIGFLHLLTNTFALYYLGITVERLYGSLRFLLIYTTA 270
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G G L SFL TP + G +G +F + GA L + + L + + + +++
Sbjct: 271 GFFGTLASFLFTPSISAGASGAIFGLFGALLYFGTVYRHLFFRTMGMNVVSLIVVNLLFG 330
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
++ +D H+G G++ GFL V L ++ Q
Sbjct: 331 LLVPG---IDNAGHIG----GLVGGFLAAGAVHLPKRAAWGRQ 366
>gi|308804015|ref|XP_003079320.1| Predicted inosine-uridine preferring nucleoside hydrolase (ISS)
[Ostreococcus tauri]
gi|116057775|emb|CAL53978.1| Predicted inosine-uridine preferring nucleoside hydrolase (ISS)
[Ostreococcus tauri]
Length = 651
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 100/183 (54%), Gaps = 11/183 (6%)
Query: 252 GFFSLPLL-------YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVC 304
G F+L LL +G KINE I GE WRLVTPMFLH GL H+ ++ ++L + GP V
Sbjct: 67 GAFALQLLTRQTLTGFGVKINEKIAAGELWRLVTPMFLHGGLPHLMVNMYSLNSIGPLVE 126
Query: 305 KSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDV 364
++G F Y G++GN S+ P P++G +G VF + GA +Y ++K L+ +
Sbjct: 127 ATFGREQFCATYLAAGLAGNYASYRFCPTPSLGASGAVFGLAGALAVYLQRHKHLLGERA 186
Query: 365 SERMFQ-KAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCP--LVQLGDASSRNS 421
++ Q + L+ ++F +++ +D W H G G + T P +++ D S R+
Sbjct: 187 DMQLKQIGSALAVNMAFGLTS-ARIDNWGHGGGLLGGAASAYFTGPNLVLESDDPSGRSM 245
Query: 422 QEE 424
+ +
Sbjct: 246 RRK 248
>gi|448238728|ref|YP_007402786.1| rhomboid family protein [Geobacillus sp. GHH01]
gi|445207570|gb|AGE23035.1| rhomboid family protein [Geobacillus sp. GHH01]
Length = 389
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 7/169 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LI GEWWRL+TPMFLH G H+ + AL G V + YG F F IY
Sbjct: 214 YGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSFRFLFIYVTA 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G G L SFL TP + G +G +F + GA L + + L + + + I++
Sbjct: 274 GFFGALASFLFTPSLSAGASGAIFGLFGALLYFGTVYRHLFFRTMGMNVISLIIVNLLFG 333
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITL 428
++ +D H+G G++ GFL +V L ++ Q + +
Sbjct: 334 LLVPG---IDNAGHIG----GLVGGFLAAGVVHLPKHTALGRQAGALAV 375
>gi|223994881|ref|XP_002287124.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976240|gb|EED94567.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 866
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 102/203 (50%), Gaps = 19/203 (9%)
Query: 209 LERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELI 268
+E D + + T N++L++I AVF + P +GAK ++L+
Sbjct: 523 MEPDGQIGKNTLTGNIFLLNI------AVFGMQTLYPALTG----------WGAKRSDLL 566
Query: 269 LVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327
L G + RL+TP+FLH G+ H+ + ++L + G + +S+G F Y L GI GN+ S
Sbjct: 567 LEGRQLHRLITPIFLHGGIGHLMANSYSLKSMGMNIERSFGRSRFVATYLLSGIMGNVVS 626
Query: 328 FLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP 387
+ +P P VG +G +F ++GA+ + +N+DL +R I + + ++ P
Sbjct: 627 AIQSPNPAVGASGAIFGLVGAYYTFLSRNQDLFGYS-GQRQKSALIETIGFNLLLGMTNP 685
Query: 388 -VDTWAHLGAAFTGIIYGFLTCP 409
+D W H+G G+ +L P
Sbjct: 686 MIDNWGHIGGFIGGVGCAYLFGP 708
>gi|28210270|ref|NP_781214.1| rhomboid family membrane protein [Clostridium tetani E88]
gi|28202706|gb|AAO35151.1| conserved membrane protein (rhomboid family) [Clostridium tetani
E88]
Length = 345
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N LI +G+++RL+T +FLH GL H+AL+ +AL GP V K YG F + IY L G
Sbjct: 200 GAKVNPLIDIGQYYRLLTCIFLHGGLIHLALNMYALSAIGPLVEKIYGKFKYLAIYFLSG 259
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
I +L S+ + ++G +G +F ++GA LI + KD + K + ++ + F
Sbjct: 260 ICSSLLSYFMSSSISIGASGAIFGLLGACLIISLKYKDRVGKAFVNNIISVIFVNLIIGF 319
Query: 381 IISNFGPVDTWAHLGAAFTGIIYGFLTCP 409
ISN VD + H+G G++ L C
Sbjct: 320 SISN---VDNFGHIGGLIGGVVISTLICK 345
>gi|410657229|ref|YP_006909600.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|410660265|ref|YP_006912636.1| Rhomboid-like protein [Dehalobacter sp. CF]
gi|409019584|gb|AFV01615.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|409022621|gb|AFV04651.1| Rhomboid-like protein [Dehalobacter sp. CF]
Length = 203
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 19/190 (10%)
Query: 219 EETSNLYLISILVSIDVAVFL-FEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLV 277
EE Y+ +LV I+V VFL E+A +N + + +GAK+N LI G++WRL+
Sbjct: 11 EEFKVFYVTYLLVLINVVVFLVMELAGGTQNPY-----VLIFFGAKMNTLIDAGQYWRLL 65
Query: 278 TPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVG 337
T MF+H G H+ + +AL+ G + +G F LIY G++G+L S+L PE + G
Sbjct: 66 TSMFIHIGFTHLLFNVYALIVLGKLAERLFGHGRFLLIYLFSGLAGSLISYLWGPELSAG 125
Query: 338 GTGPVFAIIGAWLIY-----QFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+G +F ++GA +IY F LI +L L F + F +D +A
Sbjct: 126 ASGAIFGLLGAIIIYGCRKPAFWRTGLITN-------LAIVLGINLVFGVV-FSGIDNFA 177
Query: 393 HLGAAFTGII 402
HLG F G +
Sbjct: 178 HLGGLFGGAV 187
>gi|150019138|ref|YP_001311392.1| rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
gi|149905603|gb|ABR36436.1| Rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
Length = 328
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 95/167 (56%), Gaps = 8/167 (4%)
Query: 229 ILVSIDVAVFLFE--IASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGL 286
I++ I++ FL ++ I N ++ + L YG K+NELI G++WRL+T FLH GL
Sbjct: 146 IIMGINIVTFLLTALLSGNIFNIDYW---VLLKYGGKVNELINQGQYWRLLTCAFLHGGL 202
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAII 346
H+ + ++L GP++ + YG + +F+IY ++ +L S+ +P +VG +G +F ++
Sbjct: 203 IHIVGNMYSLYILGPEIQQIYGVYKYFIIYIFSCLTSSLLSYFMSPYLSVGASGGIFGLM 262
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
GA +++ + I K + Q ++ + F ISN +D +AH
Sbjct: 263 GALVVFAIIERKRINKRYLSSLLQAMGVNLFIGFSISN---IDNFAH 306
>gi|317128371|ref|YP_004094653.1| Rhomboid protease [Bacillus cellulosilyticus DSM 2522]
gi|315473319|gb|ADU29922.1| Rhomboid protease [Bacillus cellulosilyticus DSM 2522]
Length = 524
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N LIL GEWWR + MFLH G FH+ ++ AL G V + YG F +IY +
Sbjct: 219 FGAKFNPLILQGEWWRFFSAMFLHIGFFHLMMNSLALFYLGSAVERIYGTGRFLIIYLIA 278
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G+ G++ SF + + G +G +F GA L + ++K L + + + ++ A
Sbjct: 279 GLVGSIASFALNEQVSAGASGAIFGCFGALLYFGIKHKRLFFRTMGMNVIVILSINLAFG 338
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
FI+ +D AH+G G+I GF +V L + SQ
Sbjct: 339 FIVP---MIDNGAHIG----GLIGGFAASAIVSLPRNKNVKSQ 374
>gi|387929721|ref|ZP_10132398.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
gi|387586539|gb|EIJ78863.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
Length = 518
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 7/154 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N LI+ GEWWR TP+FLH GL H+ ++ +L G V + YG F LIY
Sbjct: 214 FGAKFNLLIIEGEWWRFFTPIFLHVGLLHLLMNTLSLYYLGTVVERLYGNVRFLLIYLFA 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G +G+LTSF+ +P + G +G +F GA L + + L + + + ++ AL
Sbjct: 274 GFAGSLTSFVFSPSLSAGASGAIFGCFGALLYFGVIHPGLFFRTMGMNILVVLGINLALG 333
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
F + +D H+G G+I GFL ++
Sbjct: 334 FTLPG---IDNAGHIG----GLIGGFLAAGILHF 360
>gi|168186765|ref|ZP_02621400.1| conserved membrane protein [Clostridium botulinum C str. Eklund]
gi|169295367|gb|EDS77500.1| conserved membrane protein [Clostridium botulinum C str. Eklund]
Length = 202
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 105/181 (58%), Gaps = 10/181 (5%)
Query: 215 LQRTEETSNLYLISILVSIDVAVFLFE--IASPIRNSEFGFFSLPLLYGAKINELILVGE 272
++ T+ TS + I L++I+V V++ ++ I +S+ + L GA N L+ G+
Sbjct: 14 IRYTKNTSRVTFI--LITINVLVYIITAILSENILDSDI---RVLLFLGANENTLVSSGQ 68
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP 332
++RL+T MFLH GL H+AL+ +AL GP V + YG + +IY +GG+ +L+S++ +
Sbjct: 69 YYRLITCMFLHGGLVHLALNMYALEAIGPIVERIYGKMKYIIIYLVGGLISSLSSYVFST 128
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
++G +G +FA++GA + + +D++ K V + + ++ + I N +D +A
Sbjct: 129 GVSIGASGAIFALLGAMFVLTIKMRDVVGKAVIKNIVSVIGINIFIGLAIPN---IDNFA 185
Query: 393 H 393
H
Sbjct: 186 H 186
>gi|319651546|ref|ZP_08005673.1| hypothetical protein HMPREF1013_02285 [Bacillus sp. 2_A_57_CT2]
gi|317396613|gb|EFV77324.1| hypothetical protein HMPREF1013_02285 [Bacillus sp. 2_A_57_CT2]
Length = 506
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 89/190 (46%), Gaps = 13/190 (6%)
Query: 225 YLISILVSIDVAVFL-FEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
+ I + I VAVFL E ++ S + YGAK N LIL GEWWR +TP+ LH
Sbjct: 180 FFTYIFIFIQVAVFLVLEAMGGSTDT-----STLIKYGAKFNPLILDGEWWRFLTPIVLH 234
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
GL H+ ++ AL G V + YG F IY G G L SF+ +P + G +G +F
Sbjct: 235 IGLLHLLMNTLALFYLGSAVERVYGNLRFLFIYLAAGFGGTLASFIFSPTLSAGASGAIF 294
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
GA L + L + + + ++ A F I +D H+G G+I
Sbjct: 295 GCFGALLYFGLIYPSLFFRTIGFNIIVVLGINLAFGFTIPG---IDNAGHIG----GLIG 347
Query: 404 GFLTCPLVQL 413
GFL +V
Sbjct: 348 GFLATGIVHF 357
>gi|331268929|ref|YP_004395421.1| rhomboid family membrane protein [Clostridium botulinum BKT015925]
gi|329125479|gb|AEB75424.1| rhomboid family membrane protein [Clostridium botulinum BKT015925]
Length = 335
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 86/141 (60%), Gaps = 3/141 (2%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK N LI G+++RL+T MFLH GL H+ L+ +AL GP + KSYG + +IY +GG
Sbjct: 185 GAKENTLIASGQYYRLITCMFLHGGLMHLILNMYALKALGPMIEKSYGKMKYVIIYLVGG 244
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
+ +++S++ + ++G +G +F+++GA L+ + + + KDV + + +++ +
Sbjct: 245 LISSISSYIFSNGVSIGASGAIFSLLGAILVLTIKMRSVAGKDVIKNVVSVIVINIFIGL 304
Query: 381 IISNFGPVDTWAHLGAAFTGI 401
I N +D +AH+G G+
Sbjct: 305 AIPN---IDNFAHIGGLLGGV 322
>gi|125973563|ref|YP_001037473.1| rhomboid family protein [Clostridium thermocellum ATCC 27405]
gi|256003382|ref|ZP_05428373.1| Rhomboid family protein [Clostridium thermocellum DSM 2360]
gi|281417768|ref|ZP_06248788.1| Rhomboid family protein [Clostridium thermocellum JW20]
gi|385778515|ref|YP_005687680.1| rhomboid family protein [Clostridium thermocellum DSM 1313]
gi|419723657|ref|ZP_14250772.1| Rhomboid family protein [Clostridium thermocellum AD2]
gi|419724518|ref|ZP_14251580.1| Rhomboid family protein [Clostridium thermocellum YS]
gi|125713788|gb|ABN52280.1| Rhomboid family protein [Clostridium thermocellum ATCC 27405]
gi|255992672|gb|EEU02763.1| Rhomboid family protein [Clostridium thermocellum DSM 2360]
gi|281409170|gb|EFB39428.1| Rhomboid family protein [Clostridium thermocellum JW20]
gi|316940195|gb|ADU74229.1| Rhomboid family protein [Clostridium thermocellum DSM 1313]
gi|380772065|gb|EIC05923.1| Rhomboid family protein [Clostridium thermocellum YS]
gi|380780339|gb|EIC10022.1| Rhomboid family protein [Clostridium thermocellum AD2]
Length = 511
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 91/154 (59%), Gaps = 6/154 (3%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
+L+++++ V+L I R+ SL + +GAK N I++GE+WR VTPMFLH+G+ H
Sbjct: 184 VLIAVNILVWLL-IEIYARSKGVDSSSLLVDFGAKENTHIMMGEYWRFVTPMFLHNGITH 242
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 348
+ ++ ++L G V G F IY + G+ G++ SF+ + P+VG +G +F ++GA
Sbjct: 243 LVVNSYSLYVLGTTVEMIMGKGRFLFIYLMAGLMGSIVSFIFSIAPSVGASGAIFGLLGA 302
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 382
+ Y ++++L K F + IL+T L I+
Sbjct: 303 LIYYGTEHRELFKKG-----FGRGILTTLLINIV 331
>gi|407796208|ref|ZP_11143164.1| S54 family peptidase [Salimicrobium sp. MJ3]
gi|407019562|gb|EKE32278.1| S54 family peptidase [Salimicrobium sp. MJ3]
Length = 507
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 9/161 (5%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N I+ GEWWRL++ MFLH G+ H+ ++ AL G V + YG F F +IY L
Sbjct: 213 YGAKYNPGIIEGEWWRLISSMFLHIGVLHLLMNMLALFYLGTAVEQIYGSFRFTMIYFLA 272
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI G+ SF G +G +F + GA L + ++ L + + + I+ A++
Sbjct: 273 GILGSAASFYFNTSVAAGASGAIFGLFGALLYFAWRYPSLFFRTMGWNL----IILVAIN 328
Query: 380 FIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSR 419
+ P VD H+G G+I GFL LV L S R
Sbjct: 329 IVFGITVPQVDNSGHMG----GLIGGFLAAQLVDLPKLSHR 365
>gi|297529385|ref|YP_003670660.1| rhomboid family protein [Geobacillus sp. C56-T3]
gi|297252637|gb|ADI26083.1| Rhomboid family protein [Geobacillus sp. C56-T3]
Length = 386
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 7/169 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LI GEWWRL+TPMFLH G H+ + AL G V + YG F IY
Sbjct: 211 YGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSLRFLFIYVTA 270
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G G L SFL TP + G +G +F + GA L + + L + + + I++
Sbjct: 271 GFFGALASFLFTPSLSAGASGAIFGLFGALLYFGTVYRHLFFRTMGMNVISLIIVNLLFG 330
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITL 428
++ +D H+G G++ GFL +V L ++ Q + +
Sbjct: 331 LLVPG---IDNAGHIG----GLVGGFLAAGVVHLPKHTALGRQAGALAV 372
>gi|309792360|ref|ZP_07686828.1| Rhomboid family protein [Oscillochloris trichoides DG-6]
gi|308225581|gb|EFO79341.1| Rhomboid family protein [Oscillochloris trichoides DG6]
Length = 240
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 5/152 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+NELI G +WRL++ FLH L H+ + +AL GP+ + YG F +Y L G
Sbjct: 49 GAKVNELIAAGAYWRLLSATFLHGSLIHILFNGYALYALGPETERIYGTRRFLALYFLAG 108
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLI---AKDVSERMFQKAILSTA 377
+ G+L S+L +P +VG +G +F +IG I+ + N+ ++ K + M A+++
Sbjct: 109 LGGSLASYLLSPSVSVGASGAIFGLIGGLGIFYYLNRAVLGNFGKAQVQNMATVALINLF 168
Query: 378 LSFIISNFGPVDTWAHLGAAFTGIIYGFLTCP 409
+ F + +D W HLG GI+ G+ P
Sbjct: 169 IGFSAPSI--IDNWGHLGGLVGGIVAGWALAP 198
>gi|261417690|ref|YP_003251372.1| rhomboid family protein [Geobacillus sp. Y412MC61]
gi|319767503|ref|YP_004133004.1| rhomboid family protein [Geobacillus sp. Y412MC52]
gi|261374147|gb|ACX76890.1| Rhomboid family protein [Geobacillus sp. Y412MC61]
gi|317112369|gb|ADU94861.1| Rhomboid family protein [Geobacillus sp. Y412MC52]
Length = 386
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 7/169 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LI GEWWRL+TPMFLH G H+ + AL G V + YG F IY
Sbjct: 211 YGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSLRFLFIYVTA 270
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G G L SFL TP + G +G +F + GA L + + L + + + I++
Sbjct: 271 GFFGALASFLFTPSLSAGASGAIFGLFGALLYFGTVYRHLFFRTMGMNVISLIIVNLLFG 330
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITL 428
++ +D H+G G++ GFL +V L ++ Q + +
Sbjct: 331 LLVPG---IDNAGHIG----GLVGGFLAAGVVHLPKHTALGRQAGALAV 372
>gi|196248915|ref|ZP_03147615.1| Rhomboid family protein [Geobacillus sp. G11MC16]
gi|196211791|gb|EDY06550.1| Rhomboid family protein [Geobacillus sp. G11MC16]
Length = 390
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LI +GEWWR +TPMFLH G H+ + +AL G V + YG F LIY
Sbjct: 215 YGAKFNPLIEMGEWWRFLTPMFLHIGFLHLLTNTFALYYLGITVERLYGSLRFLLIYATA 274
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G G L SFL TP + G +G +F + GA L + + L + + + +++
Sbjct: 275 GFFGTLASFLFTPSISAGASGAIFGLFGALLYFGTVYRHLFFRTMGMNVISLIVVNLLFG 334
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
++ +D H+G G++ GFL V L
Sbjct: 335 LLVPG---IDNAGHIG----GLVGGFLAAGAVHL 361
>gi|366164287|ref|ZP_09464042.1| rhomboid family protein [Acetivibrio cellulolyticus CD2]
Length = 519
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Query: 225 YLISILVSIDVAVFL-FEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
Y+ L+ I++A++L I + I+N + +P +GAK N I+ GE+WR +TP+FLH
Sbjct: 180 YVTYCLMIINIAIWLVMNIYARIKNIDVSNLFIP--FGAKENFSIMSGEYWRFITPIFLH 237
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
+ L H+ + +L FG V YG F IY G+ GN+ SF+ + VG +G +F
Sbjct: 238 ADLEHLFANSLSLFVFGRIVEGMYGHKKFTFIYLAAGVIGNVASFMFSTYSGVGASGSIF 297
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
GA L +N + + +++ A F +D +AH+G G+I
Sbjct: 298 GFFGALLYLWVENPAAFRRYFGNNILIMIVINLAYGFASPG---IDNFAHVG----GLIG 350
Query: 404 GFLTCPLVQLGDASSR 419
GFLT +V+L S++
Sbjct: 351 GFLTSGIVKLKGVSNK 366
>gi|403237491|ref|ZP_10916077.1| rhomboid protein membrane-associated serine peptidase [Bacillus sp.
10403023]
Length = 515
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 13/190 (6%)
Query: 225 YLISILVSIDVAVF-LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
+ IL++I + +F + E+ N+E L YGAK N IL GEWWR TPM LH
Sbjct: 182 FFTYILIAIQLIMFAVLELYGGSTNTE-----TLLKYGAKENFRILNGEWWRFFTPMILH 236
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
G H+ ++ +AL G +V + YG F +IY G G+L SF+ + G +G +F
Sbjct: 237 IGFIHLLMNTFALYYLGTEVERLYGKSRFLMIYVFAGFLGSLASFVFNANISAGASGAIF 296
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
GA L + L + + + I++ L F+I +D H+G G++
Sbjct: 297 GCFGALLFFGTAYPSLFFRTMGPNVIGIIIINLVLGFMIPG---IDNSGHIG----GLVG 349
Query: 404 GFLTCPLVQL 413
GFL +V L
Sbjct: 350 GFLAASIVHL 359
>gi|56420981|ref|YP_148299.1| hypothetical protein GK2446 [Geobacillus kaustophilus HTA426]
gi|56380823|dbj|BAD76731.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 390
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LI GEWWRL+TPMFLH G H+ + AL G V + YG F IY
Sbjct: 215 YGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSLRFLFIYVTA 274
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G G L SFL TP + G +G +F + GA L + + L + + + I++
Sbjct: 275 GFFGALASFLFTPSLSAGASGAIFGLFGALLYFGTVYRHLFFRTMGMNVISLIIVNLLFG 334
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
++ +D H+G G++ GFL +V L ++ Q
Sbjct: 335 LLVPG---IDNAGHIG----GLVGGFLAAGVVHLPKHTALGRQ 370
>gi|375009531|ref|YP_004983164.1| Rhomboid [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359288380|gb|AEV20064.1| Rhomboid [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 389
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LI GEWWRL+TPMFLH G H+ + AL G V + YG F IY
Sbjct: 214 YGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSLRFLFIYVTA 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G G L SFL TP + G +G +F + GA L + + L + + + I++
Sbjct: 274 GFFGALASFLFTPSLSAGASGAIFGLFGALLYFGTVYRHLFFRTMGMNVISLIIVNLLFG 333
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
++ +D H+G G++ GFL +V L ++ Q
Sbjct: 334 LLVPG---IDNAGHIG----GLVGGFLAAGVVHLPKHTALGRQ 369
>gi|421186400|ref|ZP_15643793.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
gi|399967353|gb|EJO01835.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
Length = 241
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 31/212 (14%)
Query: 230 LVSIDVAVFLFEIA-SPIRNSEFGFFSL------------PLLYGAKINELILVGEWWRL 276
+ SI V ++ F++ FG FSL +L G +++ LIL G+W+RL
Sbjct: 16 IFSITVFIYFFQVFFDAYLFHSFGLFSLINRFINGPSIQSSILLGGQVSSLILKGQWYRL 75
Query: 277 VTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-- 334
TP+FLHS L H+ + + L+ FGP V K +G + LIY L G+ GNL + + P P
Sbjct: 76 FTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLLIYLLSGLWGNLLTLIFDPNPNI 135
Query: 335 -TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL---STALSFIISNFG--PV 388
+VG +G +F + GA + + N++ +F++ ++ + AL +ISN G V
Sbjct: 136 VSVGASGALFGLFGAMISIAWFNRN-------NPIFKRQLVVFAALALFNLISNIGDQSV 188
Query: 389 DTWAHLGAAFTGIIYGFLTC--PLVQLGDASS 418
D WAH+G +GI+ L C P Q G +
Sbjct: 189 DIWAHIGGLISGILTS-LVCNFPSAQYGKVKT 219
>gi|392426192|ref|YP_006467186.1| putative membrane protein [Desulfosporosinus acidiphilus SJ4]
gi|391356155|gb|AFM41854.1| putative membrane protein [Desulfosporosinus acidiphilus SJ4]
Length = 322
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 225 YLISILVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
Y + I++ VFL +A N + + + +GAK+N LI G+ WRL+T MF+H
Sbjct: 133 YFTYAFIGINLLVFLLMTLAGGSENQD-----VLIAFGAKVNSLIQAGQVWRLLTSMFIH 187
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
G FH+A + +AL GP SYG +F IY L G+ G + SFL +P + G +G +
Sbjct: 188 IGYFHLAFNLYALWALGPLTELSYGHGKYFAIYMLSGLGGAMASFLFSPFLSAGASGAIM 247
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
++GA L + ++ L + + +++ F +D +AHLG FTG+
Sbjct: 248 GLLGAQLFFIYKRPYLWKSGLGMNLVIVILVNLGFGFWQPG---IDNFAHLGGLFTGMFM 304
Query: 404 GFL 406
G L
Sbjct: 305 GAL 307
>gi|334131953|ref|ZP_08505715.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
gi|333443426|gb|EGK71391.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
Length = 383
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 20/228 (8%)
Query: 216 QRTEETSNLYLISILVSIDVAVFLFEIA--SPIRNSEFGFFSLPLLYGAKINELILVGEW 273
Q T + + +L+++++AVF +A + + +S+ G + L +GA G+W
Sbjct: 11 QLTTRRPRIPVTVVLIALNLAVFAAMLAGGAGLWHSQNG---VQLAWGANFGPATKDGQW 67
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL + MFLH GL H+ ++ +L G V + +GP F IY L G++GNL S + +
Sbjct: 68 WRLGSAMFLHFGLLHLGMNMASLFDGGRLVERMFGPLRFLAIYVLSGLTGNLLSLIVQGD 127
Query: 334 PTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIS-NFGPVDT 390
V G +G +F + GA L + +Q +D + + R+F A L A++ ++ N +D
Sbjct: 128 RAVSGGASGAIFGVYGALLAFLWQQRDTLDRREFVRLFWGAGLFAAITIVLGLNIPGIDN 187
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKS 438
AH+G +G++ G LV+ DA S L+ +Y P S
Sbjct: 188 GAHIGGFISGLLAG---AALVRPLDADS---------LLGRYRQPLAS 223
>gi|410460563|ref|ZP_11314238.1| hypothetical protein BAZO_14959 [Bacillus azotoformans LMG 9581]
gi|409926821|gb|EKN63973.1| hypothetical protein BAZO_14959 [Bacillus azotoformans LMG 9581]
Length = 507
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 10/189 (5%)
Query: 225 YLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHS 284
+L +LV I++ +FL + S S + +GAK N IL G+WWR +TPMFLH
Sbjct: 176 FLTYVLVVINLIMFLL---LELVGSGSTDLSTLIKFGAKYNPAILEGDWWRFITPMFLHI 232
Query: 285 GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFA 344
G H+ ++ AL G V + YG + F ++Y GI+G + SF T + + G +G +F
Sbjct: 233 GFLHLLMNTLALYYLGISVERIYGTWRFLILYFAAGITGGVASFAFTTQVSAGASGAIFG 292
Query: 345 IIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYG 404
GA L + + L + + + ++ A F++ VD AH+G G+I G
Sbjct: 293 CFGALLYFGVVHPSLFLRSMGWNIIVVLGINLAFGFLVP---MVDNSAHIG----GLIGG 345
Query: 405 FLTCPLVQL 413
FL +V L
Sbjct: 346 FLASAIVHL 354
>gi|384247206|gb|EIE20693.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 238
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 101/199 (50%), Gaps = 13/199 (6%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ ++ AV++ ++ S + LL GAK N+LI GEWWRL+TP+ LH+ L H
Sbjct: 40 ILLVLNAAVYVAQLVSKDK---------LLLLGAKDNQLIRAGEWWRLLTPVALHANLIH 90
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 348
+ + ++L + GP V G F +YT + G++ S+ P P+VG +G +F + GA
Sbjct: 91 LLTNNYSLNSLGPAVEGLCGRQRFVSVYTASALVGSVASYAFNPSPSVGASGAIFGLGGA 150
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLT 407
+Y +++ L+ + + S AL+ I P +D W H G G + +L
Sbjct: 151 LAVYAARHRKLMGSR-GDAILSSLGQSLALNVAIGLTTPRIDQWGHFGGLIGGALTAYLL 209
Query: 408 CPLVQL--GDASSRNSQEE 424
P +++ G R ++
Sbjct: 210 GPNIEVFQGKGGKRQVRDN 228
>gi|419758894|ref|ZP_14285206.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|419857800|ref|ZP_14380503.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
gi|421185357|ref|ZP_15642768.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|421188834|ref|ZP_15646166.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|421189623|ref|ZP_15646937.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|421190919|ref|ZP_15648203.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|421193560|ref|ZP_15650806.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|421195397|ref|ZP_15652605.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|421197510|ref|ZP_15654685.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399904349|gb|EJN91805.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|399964167|gb|EJN98821.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|399964538|gb|EJN99179.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|399971719|gb|EJO05958.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|399972713|gb|EJO06912.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|399973615|gb|EJO07780.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|399975119|gb|EJO09187.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399975822|gb|EJO09857.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|410497271|gb|EKP88746.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
Length = 241
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 31/212 (14%)
Query: 230 LVSIDVAVFLFEIA-SPIRNSEFGFFSLP------------LLYGAKINELILVGEWWRL 276
+ SI V ++ F++ FG FSL +L G +++ LIL G+W+RL
Sbjct: 16 IFSITVFIYFFQVFFDAYLFHSFGLFSLINRFINGPSIQSLILLGGQVSSLILKGQWYRL 75
Query: 277 VTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-- 334
TP+FLHS L H+ + + L+ FGP V K +G + LIY L G+ GNL + + P P
Sbjct: 76 FTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLLIYLLSGLWGNLLTLIFDPNPNI 135
Query: 335 -TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL---STALSFIISNFG--PV 388
+VG +G +F + GA + + N++ +F++ ++ + AL +ISN G V
Sbjct: 136 VSVGASGALFGLFGAMISIAWFNRN-------NPIFKRQLVVFAALALFNLISNIGDQSV 188
Query: 389 DTWAHLGAAFTGIIYGFLTC--PLVQLGDASS 418
D WAH+G +GI+ L C P Q G +
Sbjct: 189 DIWAHIGGLISGILTS-LVCNFPSAQYGKVKT 219
>gi|431793836|ref|YP_007220741.1| hypothetical protein Desdi_1896 [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784062|gb|AGA69345.1| putative membrane protein [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 321
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 99/180 (55%), Gaps = 11/180 (6%)
Query: 225 YLISILVSIDVAVF-LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
YL L+ I++ +F + +A N+ + +++GAK+N LIL GE+WRL T MFLH
Sbjct: 143 YLTYSLIFINLFIFAMMTLAGGSTNT-----GVLIMFGAKVNSLILQGEYWRLFTSMFLH 197
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
G+ H+A + +AL GP + + +G + LIY G+ G+ SFL T + G +G +F
Sbjct: 198 IGVIHLAFNLYALWALGPILEELFGRIRYLLIYISSGVMGSAASFLFTDAISAGASGAIF 257
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGII 402
I+GA ++Y L + + +++ ++ F F P +D +AH+G +G++
Sbjct: 258 GILGALVVYSRSKPFLWKSGFGKNLVIIVLINLSIGF----FQPGIDVYAHIGGLLSGML 313
>gi|89894371|ref|YP_517858.1| hypothetical protein DSY1625 [Desulfitobacterium hafniense Y51]
gi|219668797|ref|YP_002459232.1| rhomboid family protein [Desulfitobacterium hafniense DCB-2]
gi|423073963|ref|ZP_17062698.1| peptidase, S54 family [Desulfitobacterium hafniense DP7]
gi|89333819|dbj|BAE83414.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539057|gb|ACL20796.1| Rhomboid family protein [Desulfitobacterium hafniense DCB-2]
gi|361855174|gb|EHL07168.1| peptidase, S54 family [Desulfitobacterium hafniense DP7]
Length = 327
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 29/262 (11%)
Query: 149 LDSLDAYLGKLNTDAKFSTDQTTER---NLVAAQLSISKSSKRGYMGKLKGYRELRNKDG 205
L S+ A+ L T + F+ T +R N V + L ++ SS Y +
Sbjct: 87 LKSIQAWFIDLQTGSIFAAPATAKREHLNRVLSYLEVNSSSSASV------YETSESTPS 140
Query: 206 VRSLERDLALQRTEETSNLYLISILVSIDVAVF-LFEIASPIRNSEFGFFSLPLLYGAKI 264
RS + YL L++I++ VF L +A + + +L+GAK+
Sbjct: 141 ARSGQ-----------GPPYLTYTLIAINLIVFGLMTLAGGSTRT-----GVLILFGAKV 184
Query: 265 NELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN 324
N LI+ GE+WRL T MFLH G H+A + +AL G + G + +Y L GI G+
Sbjct: 185 NALIIQGEYWRLFTSMFLHIGFLHLAFNLYALWALGAIAEELLGRVRYITVYILSGILGS 244
Query: 325 LTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN 384
+ SF T + G +G +F I+GA ++Y + L + + +++ L F +
Sbjct: 245 VASFFFTDAISAGASGAIFGILGALVVYSRRKPFLWKSGFGKSLAVVVLINLGLGFFQTG 304
Query: 385 FGPVDTWAHLGAAFTGIIYGFL 406
+D +AHLG TG+++ +L
Sbjct: 305 ---IDVYAHLGGLVTGMLFTWL 323
>gi|219849715|ref|YP_002464148.1| rhomboid family protein [Chloroflexus aggregans DSM 9485]
gi|219543974|gb|ACL25712.1| Rhomboid family protein [Chloroflexus aggregans DSM 9485]
Length = 271
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 254 FSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFF 313
S+ ++ GAK+NE I GE WRL+T LH+ L H+ + +AL GP+ + YG F
Sbjct: 73 LSVLVVLGAKVNERIAAGEVWRLLTATVLHANLIHIFFNGYALSVLGPETERFYGHVRFL 132
Query: 314 LIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
++Y L G+ G++ S+ + P VG +G +F +IG ++ + N+ ++ + +++ + I
Sbjct: 133 VLYLLSGVGGSIASYALSSAPAVGASGAIFGLIGGLGMFYYLNRQVLGQFGQDQV--RGI 190
Query: 374 LSTALSFIISNF---GPVDTWAHLGAAFTGIIYGFLTCP 409
++ A+ ++ F G +D W HLG +G++ P
Sbjct: 191 VAIAVINLLIGFAAQGVIDNWGHLGGLVSGVVVSLALSP 229
>gi|312110225|ref|YP_003988541.1| Rhomboid protease [Geobacillus sp. Y4.1MC1]
gi|311215326|gb|ADP73930.1| Rhomboid protease [Geobacillus sp. Y4.1MC1]
Length = 389
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LI GEWWR TP+FLH G H+ ++ +AL G V + YG + FF IY
Sbjct: 215 YGAKFNPLIQAGEWWRFFTPIFLHIGFLHLLMNTFALYYLGMTVERLYGSWRFFFIYFTA 274
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G G L SFL T + G +G +F + GA L + + L + + + +++
Sbjct: 275 GFFGTLGSFLFTASLSAGASGAIFGLFGALLYFGTVYRHLFLQTIGTNIIGLIVINLVFG 334
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
I+ +D H+G G+I G+L +V L + Q
Sbjct: 335 MIVPG---IDNAGHIG----GLIGGYLAAGIVHLPNHFDWKKQ 370
>gi|268637931|ref|XP_002649151.1| rhomboid family protein [Dictyostelium discoideum AX4]
gi|256012943|gb|EEU04099.1| rhomboid family protein [Dictyostelium discoideum AX4]
Length = 489
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 99/194 (51%), Gaps = 11/194 (5%)
Query: 225 YLISILVSIDVAVFLFEIA-----SPIR-NSEFGFFSLPLL-YGAKINELILVGEWWRLV 277
Y I + ID+ +F++EI P + N FG S LL GAK + LIL GEWWR
Sbjct: 238 YFIIAISLIDLVMFIWEIIYNGGFEPWKTNPWFGPNSYTLLDVGAKYSPLILNGEWWRFF 297
Query: 278 TPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPT-V 336
TP+FLH G+FH ++ L G Q+ ++YG IY L G++GNL S + P V
Sbjct: 298 TPIFLHVGIFHYLMNMVTQLRVGMQLERAYGGHRIVPIYLLCGVAGNLCSAIMLPNSVQV 357
Query: 337 GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLG 395
G +G +F +G L +N ++AK F + S SF + F P VD +AHLG
Sbjct: 358 GASGAIFGFLGVLLTDLIRNWSVLAKPWLN--FGSLLFSIITSFAVGLFLPGVDNFAHLG 415
Query: 396 AAFTGIIYGFLTCP 409
GI+ + P
Sbjct: 416 GFIAGILTAAIFLP 429
>gi|423719255|ref|ZP_17693437.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
gi|383368158|gb|EID45433.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
Length = 389
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LI GEWWR TP+FLH G H+ ++ +AL G V + YG + FF IY
Sbjct: 215 YGAKFNPLIQAGEWWRFFTPIFLHIGFLHLLMNTFALYYLGMTVERLYGSWRFFFIYFTA 274
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G G L SFL T + G +G +F + GA L + + L + + + +++
Sbjct: 275 GFFGTLGSFLFTASLSAGASGAIFGLFGALLYFGTVYRHLFWQTIGTNIIGLIVINLVFG 334
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
I+ +D H+G G+I G+L +V L + Q
Sbjct: 335 MIVPG---IDNAGHIG----GLIGGYLAAGIVHLPNHFDWKKQ 370
>gi|336234689|ref|YP_004587305.1| rhomboid protease [Geobacillus thermoglucosidasius C56-YS93]
gi|335361544|gb|AEH47224.1| Rhomboid protease [Geobacillus thermoglucosidasius C56-YS93]
Length = 389
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LI GEWWR TP+FLH G H+ ++ +AL G V + YG + FF IY
Sbjct: 215 YGAKFNPLIQAGEWWRFFTPIFLHIGFLHLLMNTFALYYLGMTVERLYGSWRFFFIYFTA 274
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G G L SFL T + G +G +F + GA L + + L + + + +++
Sbjct: 275 GFFGTLGSFLFTASLSAGASGAIFGLFGALLYFGTVYRHLFWQTIGTNIIGLIVINLVFG 334
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
I+ +D H+G G+I G+L +V L + Q
Sbjct: 335 MIVPG---IDNAGHIG----GLIGGYLAAGIVHLPNHFDWKKQ 370
>gi|116490957|ref|YP_810501.1| membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290890431|ref|ZP_06553506.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|419859592|ref|ZP_14382246.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|116091682|gb|ABJ56836.1| Membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290479827|gb|EFD88476.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|410496609|gb|EKP88092.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
Length = 236
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 31/212 (14%)
Query: 230 LVSIDVAVFLFEIA-SPIRNSEFGFFSLP------------LLYGAKINELILVGEWWRL 276
+ SI V ++ F++ FG FSL +L G +++ LIL G+W+RL
Sbjct: 11 IFSITVFIYFFQVFFDAYLFHSFGLFSLINRFINGPSIQSLILLGGQVSSLILKGQWYRL 70
Query: 277 VTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-- 334
TP+FLHS L H+ + + L+ FGP V K +G + LIY L G+ GNL + + P P
Sbjct: 71 FTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLLIYLLSGLWGNLLTLIFDPNPNI 130
Query: 335 -TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL---STALSFIISNFG--PV 388
+VG +G +F + GA + + N++ +F++ ++ + AL +ISN G V
Sbjct: 131 VSVGASGALFGLFGAMISIAWFNRN-------NPIFKRQLVVFAALALFNLISNIGDQSV 183
Query: 389 DTWAHLGAAFTGIIYGFLTC--PLVQLGDASS 418
D WAH+G +GI+ L C P Q G +
Sbjct: 184 DIWAHIGGLISGILTS-LVCNFPSAQYGKVKT 214
>gi|415885504|ref|ZP_11547432.1| Serine protease of Rhomboid family [Bacillus methanolicus MGA3]
gi|387591173|gb|EIJ83492.1| Serine protease of Rhomboid family [Bacillus methanolicus MGA3]
Length = 518
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 225 YLISILVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
+ + + + +AVFL E+ N+ S + +GAK N LI GEWWR TP+FLH
Sbjct: 183 FFTYVFMILQIAVFLLLELNGGSTNT-----STLIRFGAKFNPLINEGEWWRFFTPIFLH 237
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
GL H+ ++ AL G V + YG F LIY G +G+L SF+ +P + G +G +F
Sbjct: 238 IGLLHLLMNTLALYYLGTVVERIYGNVRFMLIYLAAGFAGSLASFVFSPSLSAGASGAIF 297
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
GA L + + L + + + ++ AL F + +D H+G G+I
Sbjct: 298 GCFGALLYFGVIHPRLFFRTMGMNILVVLGINLALGFTLPG---IDNAGHIG----GLIG 350
Query: 404 GFLTCPLVQL 413
GFL ++
Sbjct: 351 GFLAAGVLHF 360
>gi|373859031|ref|ZP_09601763.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372451122|gb|EHP24601.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 522
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 13/193 (6%)
Query: 220 ETSNLYLISILVSIDVAVFL-FEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVT 278
E + IL+ I +AV L E+ NS + + +GAK N LI+ G+WWR +T
Sbjct: 178 ENGKPFFTYILLVIQIAVLLVMELNGGSTNS-----TTLIKFGAKFNPLIIEGQWWRFLT 232
Query: 279 PMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGG 338
P+F+H G H+ ++ AL GP V + YG F F LIY G +G L SF + + G
Sbjct: 233 PIFIHIGFLHLIMNSIALYYIGPLVERIYGNFRFILIYLFAGFTGVLASFAFSANLSAGA 292
Query: 339 TGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAF 398
+G +F GA L + L + + + L+ A F + +D H+G
Sbjct: 293 SGAIFGCFGALLYFGLIYPKLFFRTMGMNILVVIGLNLAFGFSMQG---IDNAGHIG--- 346
Query: 399 TGIIYGFLTCPLV 411
G+I GFL ++
Sbjct: 347 -GLIGGFLASGIL 358
>gi|402298353|ref|ZP_10818053.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
gi|401726454|gb|EJS99682.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
Length = 519
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 7/153 (4%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK + LIL GEWWR++T MF+H G H+ ++ AL G V + YG F F IY G
Sbjct: 222 GAKYSPLILDGEWWRIITSMFIHIGFLHLLMNSLALYFLGTLVERIYGSFRFVFIYFTAG 281
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
+ G L SF G +G +F + GA L + + L + + + ++ A F
Sbjct: 282 VIGTLVSFWMNLSIGAGASGAIFGLFGALLYFGLNYRKLFFRTMGANVLIVLAINLAFGF 341
Query: 381 IISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
+I VD AH+G G+I GFL ++QL
Sbjct: 342 LIP---VVDNSAHVG----GLIGGFLAAYVIQL 367
>gi|397576168|gb|EJK50102.1| hypothetical protein THAOC_30966 [Thalassiosira oceanica]
Length = 527
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 14/179 (7%)
Query: 237 VFLFEIASPIRNSEFGFFSL-PLL--YGAKINELILVG-EWWRLVTPMFLHSGLFHVALS 292
+FL IA +G +L P L +GAK ++L+L G + RL+TP+FLH G+ H+ +
Sbjct: 211 IFLVNIAV------YGLQTLMPQLTAWGAKRSDLLLEGRQLHRLITPVFLHGGIGHLVSN 264
Query: 293 CWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIY 352
++L + G V ++GP Y + G++GN+ S +++P P VG +G +F ++GA+ +
Sbjct: 265 SYSLKSMGNNVEGAFGPARTLATYLVSGVAGNIFSAVNSPNPAVGASGAIFGLVGAYYTF 324
Query: 353 QFQNKDLIAKDVSERMFQKAILST-ALSFIISNFGPV-DTWAHLGAAFTGIIYGFLTCP 409
+N ++ S R + A+L T ++ ++ PV D W HLG G+ +L P
Sbjct: 325 LARNSEIFGH--SGRAQKGALLETIGINLVLGMTNPVIDNWGHLGGFIGGVGMSWLIGP 381
>gi|188589117|ref|YP_001920138.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
gi|188499398|gb|ACD52534.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
Length = 321
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 223 NLYLIS-----ILVSIDVAVFLFE--IASPIRNSEFGFFSLPLLYGAKINELILVGEWWR 275
N YLI+ IL++I+V VFL I+ I + ++ L +GAK N LI GE WR
Sbjct: 130 NKYLINKKSTLILIAINVIVFLLTVFISRSILTIDI---NVLLNFGAKYNPLIYQGEVWR 186
Query: 276 LVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEP 334
LV FLH G+ H+ + +AL GPQV K +G + +IY + I S +L L+
Sbjct: 187 LVACAFLHGGITHLLFNMYALYILGPQVEKIFGIKKYLIIYFVSAITSSSLGVALNKNTI 246
Query: 335 TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 394
+VG +G +F ++GA L++ + + + K+ + IL+ + F ISN +D H+
Sbjct: 247 SVGASGAIFGLLGAILVFSIKQRHKVEKEYILNLLGVIILNLLIGFNISN---IDNLGHI 303
Query: 395 GAAFTGII 402
G GII
Sbjct: 304 GGFLGGII 311
>gi|255077864|ref|XP_002502512.1| rhomboid-like protein [Micromonas sp. RCC299]
gi|226517777|gb|ACO63770.1| rhomboid-like protein [Micromonas sp. RCC299]
Length = 336
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N I GE WRL+TP+ LH H+ ++C +L GP V + +G F +Y G
Sbjct: 143 GAKVNAKIAQGEVWRLLTPLLLHGSALHLMVNCMSLNNLGPVVERQFGREQFMAVYLGSG 202
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
+ GN S+ P VG + +F ++GA IY +++DL D +++FQ + S L+
Sbjct: 203 LLGNFLSYKRCPNNAVGASSAIFGLVGALGIYLNRHRDLFG-DYGDKVFQNLLGSVGLNA 261
Query: 381 IISNFGP-VDTWAHLGAAFTGIIYGFLTCP-LVQLGDASSRNSQEE 424
+ +D W H G G + + P LV +G + + E
Sbjct: 262 MFGLMSKRIDNWGHFGGFLGGAVVAWTVGPNLVVVGAGERVDERRE 307
>gi|187776993|ref|ZP_02993466.1| hypothetical protein CLOSPO_00538 [Clostridium sporogenes ATCC
15579]
gi|187773921|gb|EDU37723.1| peptidase, S54 family [Clostridium sporogenes ATCC 15579]
Length = 344
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N I GE++RL+T MFLH GL H+AL+ +AL + GP V +G + +IY + G
Sbjct: 190 GAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNSIGPLVEIYFGKVKYLIIYFISG 249
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
I + S+L + ++G +G +F +GA I ++N+ K+ + +++ L F
Sbjct: 250 ILSSYFSYLFSSSVSIGASGAIFGTLGATFIIAYKNRKRGGKEFLNNIISVIVINLILGF 309
Query: 381 IISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQ 412
I N VD + H+G G+I L Q
Sbjct: 310 SIPN---VDNFGHIGGLIGGVIVTLLLMNRAQ 338
>gi|251778447|ref|ZP_04821367.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243082762|gb|EES48652.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 321
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 223 NLYLIS-----ILVSIDVAVFLFE--IASPIRNSEFGFFSLPLLYGAKINELILVGEWWR 275
N YLI+ IL++I+V VFL I+ I + ++ L GAK N LI GE WR
Sbjct: 130 NKYLINKKSTLILIAINVIVFLLTVFISRSILTIDI---NVLLNLGAKYNPLIYQGEVWR 186
Query: 276 LVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEP 334
LVT FLH G+ H+ + +AL GPQV K +G + +IY + I S +L L+
Sbjct: 187 LVTCAFLHGGITHLLFNMYALYILGPQVEKIFGIKKYLIIYFVSAITSSSLGVALNKNTI 246
Query: 335 TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 394
+VG +G +F ++GA L++ + + + K+ + IL+ + F ISN +D H+
Sbjct: 247 SVGASGAIFGLLGAILVFSIKQRHKVEKEYILNLIGVIILNLLIGFNISN---IDNLGHI 303
Query: 395 GAAFTGII 402
G G+I
Sbjct: 304 GGFLGGVI 311
>gi|145347053|ref|XP_001417993.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578221|gb|ABO96286.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 268
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+NE I G+ WRL TP+FLH GL H+ ++ ++L + GP + ++G F +Y G
Sbjct: 77 GAKVNERIAAGQLWRLATPIFLHGGLPHLMVNMYSLNSIGPLMEATFGREQFLAVYFGAG 136
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
++GN S+ +VG +G VF + GA +Y ++K + + ++ Q L TAL+
Sbjct: 137 VAGNYASYRFCASNSVGASGAVFGLAGALAVYLQRHKRYLGERADMQLQQ---LGTALA- 192
Query: 381 IISNFG----PVDTWAHLGAAFTGIIYGFLTCP 409
+ FG +D W H G G FLT P
Sbjct: 193 VNMGFGLTSRRIDNWGHAGGLVGGAALAFLTGP 225
>gi|424826465|ref|ZP_18251350.1| S54 family peptidase [Clostridium sporogenes PA 3679]
gi|365980910|gb|EHN16927.1| S54 family peptidase [Clostridium sporogenes PA 3679]
Length = 343
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N I GE++RL+T MFLH GL H+AL+ +AL + GP V +G + +IY + G
Sbjct: 190 GAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNSIGPLVEIYFGKVKYLIIYFISG 249
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
I + S+L + ++G +G +F +GA LI ++N+ K+ + +++ L F
Sbjct: 250 ILSSYFSYLFSSSVSIGASGAIFGTLGATLIIAYKNRKKGGKEFLNNIISVIVINLILGF 309
Query: 381 IISNFGPVDTWAHLGAAFTGII 402
I N VD + H+G G+I
Sbjct: 310 SIPN---VDNFGHIGGLIGGVI 328
>gi|205374009|ref|ZP_03226809.1| hypothetical protein Bcoam_12572 [Bacillus coahuilensis m4-4]
Length = 392
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
+ +GAK N LIL GEWWR +TP+FLH G FH+ ++ +AL+ G +V K +G + F IY
Sbjct: 211 VFFGAKFNPLILEGEWWRFITPIFLHIGFFHLLMNTFALVLIGREVEKIFGKWRFLFIYL 270
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
L GI G + SF P + G +G +F GA L + + + + + + L+
Sbjct: 271 LAGIIGCIASFYFNPVGLSAGASGAIFGCFGALLYFGYTFPQVFFRTMGMNILVIVGLNL 330
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
L F + +D H+G G++ GF+ +V
Sbjct: 331 VLGFTVPG---IDNAGHIG----GLVGGFIATGIV 358
>gi|288555804|ref|YP_003427739.1| rhomboid protein membrane-associated serine peptidase [Bacillus
pseudofirmus OF4]
gi|288546964|gb|ADC50847.1| rhomboid protein, putative membrane-associated serine peptidase
[Bacillus pseudofirmus OF4]
Length = 512
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N IL GEWWR + MFLH G H+ ++ AL G V + YG F LIY +
Sbjct: 215 FGAKYNPAILEGEWWRFFSSMFLHIGFIHLFMNSLALFYLGGAVERMYGTSRFVLIYFIA 274
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G+ G+++SF + G +G +F + GA L + L + + + ++
Sbjct: 275 GLIGSISSFAFNEQVAAGASGAIFGLFGALLYFGTAQPKLFFRTMGMNVLVILGINLVFG 334
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
F++ +D AH+G G++ GFL LVQL R Q
Sbjct: 335 FVMPM---IDNGAHIG----GLVGGFLAAALVQLPKEKGRPRQ 370
>gi|366089319|ref|ZP_09455792.1| membrane-associated serine protease [Lactobacillus acidipiscis KCTC
13900]
Length = 217
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 26/197 (13%)
Query: 216 QRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWR 275
QR T L +I+I+V + L +A N+ ++ + +GAK+N+LI GEWWR
Sbjct: 5 QRPSATYFLIIINIIVYL-----LMTVAGGSENT-----NVLVFFGAKVNQLIGQGEWWR 54
Query: 276 LVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPT 335
L TPMF+H GL H+ L+ L G Q+ +G + F ++Y + G+ GN+ SF+ +P +
Sbjct: 55 LFTPMFIHIGLQHIVLNMVTLYFIGIQIEAVFGKWRFVILYLISGLGGNIASFVFSPSIS 114
Query: 336 VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG----PVDTW 391
G + +F + GA+L ++ + + + +A L +I N G +D
Sbjct: 115 AGASTSIFGLFGAFL--------MLGESYRQNPYIRATAKQFLILVILNLGLGFTGIDIA 166
Query: 392 AHLGAAFTGIIYGFLTC 408
H+G G++ GFLT
Sbjct: 167 GHIG----GLLAGFLTA 179
>gi|407980349|ref|ZP_11161140.1| peptidase [Bacillus sp. HYC-10]
gi|407412941|gb|EKF34690.1| peptidase [Bacillus sp. HYC-10]
Length = 512
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 13/191 (6%)
Query: 229 ILVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
+L+++ V +FL E++ N+ + +GAK N LIL GEWWRLVTPMFLH GL
Sbjct: 187 LLIAVQVVMFLLLELSGGSTNT-----ATLTAFGAKNNVLILEGEWWRLVTPMFLHIGLT 241
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+ + +AL + G V + YG F LIY + GI G++ SF+ G +G +F +G
Sbjct: 242 HLLFNTFALWSVGAAVERIYGSGRFLLIYLISGIFGSIASFVFNTAIAAGASGAIFGCLG 301
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
A L N+ L + + + +++ + F +S +D HLG G+ GFL
Sbjct: 302 ALLYLAISNRKLFFRTMGTNIIVIILINLGIGFTVSG---IDNAGHLG----GLTGGFLA 354
Query: 408 CPLVQLGDASS 418
V+L S
Sbjct: 355 ALAVRLPKQSQ 365
>gi|311030831|ref|ZP_07708921.1| Serine protease of Rhomboid family, contains TPR repeats [Bacillus
sp. m3-13]
Length = 503
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 120/274 (43%), Gaps = 29/274 (10%)
Query: 144 NAKTELDSLDAYLGK----LNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRE 199
N KTEL S+ + G LN A+ + D+ +SI + ++ +G + +
Sbjct: 107 NEKTELHSIVLHEGNTQHTLNKIAQATGDE----------VSIKEENELDDLGLYQLKQS 156
Query: 200 LRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLL 259
+ N R + Q + + I + + V +L E +NSE +
Sbjct: 157 VLNASSQRDKKERSLFQHGKPLFTYFFIFLHL---VMFYLLETNGGSQNSE-----TLVK 208
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N IL GEWWR TP+ LH G H+ L+ A+ G V + YG F IY
Sbjct: 209 YGAKYNPAILEGEWWRFFTPIVLHIGFLHLLLNTMAIFYLGSAVERIYGNIRFLAIYLFA 268
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G +G+L SF+ T + G +G +F GA L + + + + + ++ A+
Sbjct: 269 GFTGSLASFVFTSSLSAGASGAIFGCFGALLFVGIIHPKMFFRTMGANILVLIGINLAIG 328
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
F I +D H+G G+I GFL +V L
Sbjct: 329 FTIPG---IDNAGHIG----GLIGGFLASAVVHL 355
>gi|254556483|ref|YP_003062900.1| hypothetical protein JDM1_1316 [Lactobacillus plantarum JDM1]
gi|308180426|ref|YP_003924554.1| integral membrane protein [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|448821092|ref|YP_007414254.1| Membrane-bound protease, rhomboid family [Lactobacillus plantarum
ZJ316]
gi|254045410|gb|ACT62203.1| integral membrane protein [Lactobacillus plantarum JDM1]
gi|308045917|gb|ADN98460.1| integral membrane protein [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|448274589|gb|AGE39108.1| Membrane-bound protease, rhomboid family [Lactobacillus plantarum
ZJ316]
Length = 227
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 87/171 (50%), Gaps = 19/171 (11%)
Query: 229 ILVSIDVAVFLFEI-----ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
+L+ I VAVFL E A I NS GAK N+ I G+WWRLVTPMFLH
Sbjct: 17 VLLGITVAVFLVEWLMGDGAMLIFNS----------LGAKNNQAIAAGQWWRLVTPMFLH 66
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
GL H+AL+ + G Q+ YG + IY LGGISGN+ SF + +VG + F
Sbjct: 67 MGLTHIALNGVVIYFMGMQIEAMYGHWRMLAIYILGGISGNIMSFALSNNQSVGASTACF 126
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPVDTWAH 393
A+ GA+L + V ++ + +L T L+ + F +D W H
Sbjct: 127 ALFGAFLTI---GESFWENPVIRQLTNQFLLLTVLNLVFDMFSNGIDIWGH 174
>gi|397612848|gb|EJK61912.1| hypothetical protein THAOC_17510, partial [Thalassiosira oceanica]
Length = 434
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 100/187 (53%), Gaps = 15/187 (8%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVG-EWWRLVTPMFLHS 284
LI + +++AV+ + P + +GAK ++L+L G + RL+TP+FLH
Sbjct: 218 LIGKIFLVNIAVYGLQTLMPQLTA----------WGAKRSDLLLEGRQLHRLITPVFLHG 267
Query: 285 GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFA 344
G+ H+ + ++L + G V ++GP Y + G++GN+ S +++P P VG +G +F
Sbjct: 268 GIGHLVANSYSLKSMGNNVEGAFGPARTLATYLVSGVAGNIFSAVNSPNPAVGASGAIFG 327
Query: 345 IIGAWLIYQFQNKDLIAKDVSERMFQKAILST-ALSFIISNFGPV-DTWAHLGAAFTGII 402
++GA+ + +N ++ S R + A+L T ++ ++ PV D W H+G G+
Sbjct: 328 LVGAYYTFLARNSEIFGH--SGRAQKGALLETIGINLVLGMTNPVIDNWGHIGGFIGGVG 385
Query: 403 YGFLTCP 409
+L P
Sbjct: 386 MSWLIGP 392
>gi|168058279|ref|XP_001781137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667455|gb|EDQ54085.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 391
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
+I++ +++ +F +IAS + LL GAK+N LI G+WWR VTP LH+ +
Sbjct: 185 NIILGVNLLMFGAQIASQGQ---------LLLLGAKVNSLIDKGQWWRFVTPSVLHANIM 235
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+ ++C++L + GP V G F IY + I+ + S+ P+VG +G +F ++G
Sbjct: 236 HLLVNCYSLNSVGPTVESLSGGKRFLAIYAVSAIASSGLSYTLCTAPSVGASGAIFGLVG 295
Query: 348 AWLIYQFQNKDL-IAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
A ++ ++K L I D S + +++ L F + + G +D W H+G F G +L
Sbjct: 296 ALAVFLARHKTLMIGGDQSLAQVAR-VIAINLGFGLLSSG-IDNWGHVGGLFGGAAVAWL 353
Query: 407 TCP 409
P
Sbjct: 354 LGP 356
>gi|404370657|ref|ZP_10975977.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
gi|226913215|gb|EEH98416.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
Length = 325
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N LI GE +RL+T FLH G+ H+ + AL G +V YG + IY +
Sbjct: 172 GAKVNVLINSGEIYRLLTSAFLHGGIIHIFFNMSALNIIGREVEAVYGSKRYIAIYVISA 231
Query: 321 ISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ G++ S+L P +VG +G +F ++GA LI+ + +D I K + + + L+ +
Sbjct: 232 LGGSVVSYLFKPNSISVGASGAIFGLLGAMLIFGLKERDKIGKQYMKNILETIGLNVIIG 291
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFL 406
I N +D +AHLG G I F+
Sbjct: 292 ITIPN---IDNFAHLGGLILGTITSFI 315
>gi|300767209|ref|ZP_07077121.1| S54 family peptidase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|380032412|ref|YP_004889403.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
WCFS1]
gi|418275176|ref|ZP_12890499.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
subsp. plantarum NC8]
gi|300495028|gb|EFK30184.1| S54 family peptidase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|342241655|emb|CCC78889.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
WCFS1]
gi|376008727|gb|EHS82056.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
subsp. plantarum NC8]
Length = 227
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 87/166 (52%), Gaps = 9/166 (5%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
+L+ I VAVFL E + F SL GAK N+ I G+WWRLVTPMFLH GL H
Sbjct: 17 VLLGITVAVFLVEWLMG-DGAMLVFNSL----GAKNNQAIAAGQWWRLVTPMFLHMGLTH 71
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 348
+AL+ + G Q+ YG + IY LGGISGN+ SF + +VG + FA+ GA
Sbjct: 72 IALNGVVIYFMGMQIEAMYGHWRMLAIYILGGISGNIMSFALSNNQSVGASTACFALFGA 131
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPVDTWAH 393
+L + V ++ + +L T L+ + F +D W H
Sbjct: 132 FLTI---GESFWENPVIRQLTNQFLLLTVLNLVFDMFSNGIDIWGH 174
>gi|157692984|ref|YP_001487446.1| peptidase [Bacillus pumilus SAFR-032]
gi|157681742|gb|ABV62886.1| S54 family peptidase [Bacillus pumilus SAFR-032]
Length = 512
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 7/154 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N LIL GEWWRL+TPMFLH GL H+ + +AL + G V + YG + F LIY +
Sbjct: 214 FGAKNNGLILEGEWWRLMTPMFLHIGLTHLLFNTFALWSVGAAVERIYGSWRFLLIYFIS 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI G++ SF+ G +G +F +GA L N+ L + + + +++ +
Sbjct: 274 GIFGSIASFVFNTAIAAGASGAIFGCLGALLYLAISNRKLFFRTMGTNIIVIILINLGIG 333
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
F +S +D HLG G++ GFL V+L
Sbjct: 334 FTVSG---IDNAGHLG----GLVGGFLAALAVRL 360
>gi|389571781|ref|ZP_10161869.1| peptidase [Bacillus sp. M 2-6]
gi|388428267|gb|EIL86064.1| peptidase [Bacillus sp. M 2-6]
Length = 512
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 6/132 (4%)
Query: 229 ILVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
+L+++ V +FL E++ N+ + +GAK N LIL GEWWR VTPMFLH GL
Sbjct: 187 MLIAVQVVMFLLLELSGGSTNT-----ATLTAFGAKNNVLILEGEWWRFVTPMFLHIGLT 241
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+ + +AL + G V + YG F LIY + GI G++ SF+ G +G +F +G
Sbjct: 242 HLLFNTFALWSVGAAVERIYGSGRFLLIYLISGIFGSIASFVFNTAIVAGASGAIFGCLG 301
Query: 348 AWLIYQFQNKDL 359
A L N+ L
Sbjct: 302 ALLYLAISNRKL 313
>gi|366085766|ref|ZP_09452251.1| membrane-associated serine protease [Lactobacillus zeae KCTC 3804]
Length = 229
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 117/219 (53%), Gaps = 18/219 (8%)
Query: 217 RTEETSNLYLISILVSIDVAVFLFE-IASPIRNSEFGFFSLPLLYGAKINELILVGEWWR 275
R+ ++ Y+ + ++++ + VF+ E ++ N+E + + YGA+ N LIL G+WWR
Sbjct: 7 RSRFQNSAYVTNGILAVTILVFILETLSGGSTNTE-----VLIAYGARANPLILYGQWWR 61
Query: 276 LVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP- 334
L+TP+F+H GL H+ ++ ++L G + +G + FFL+Y + G +GN+ SF +P
Sbjct: 62 LITPVFVHIGLTHILMNGFSLYFLGEMTERLFGHWRFFLLYFISGFAGNVASFAFSPNTL 121
Query: 335 TVGGTGPVFAIIGAWLIYQFQNKD-LIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
G + +F ++GA L+ +D + + +S + +L+ A + S VD + H
Sbjct: 122 AAGASTAIFGLLGACLMLGDTYRDNPVIRQLSRQFLLLVVLNLAFNLFSSG---VDIYGH 178
Query: 394 LGAAFTGIIYGFLTCPLV---QLGDASSRNSQEEGITLI 429
+G G++ GFL ++ LG + +TLI
Sbjct: 179 IG----GVLGGFLAAGMLGAPALGRMGTVRRVASAVTLI 213
>gi|194017686|ref|ZP_03056296.1| S54 family peptidase [Bacillus pumilus ATCC 7061]
gi|194010586|gb|EDW20158.1| S54 family peptidase [Bacillus pumilus ATCC 7061]
Length = 512
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 84/154 (54%), Gaps = 7/154 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N LIL GEWWRL+TPMFLH GL H+ + +AL + G V K YG + F LIY +
Sbjct: 214 FGAKNNGLILDGEWWRLITPMFLHIGLTHLLFNTFALWSVGAAVEKIYGSWRFLLIYFIS 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G G++ SF+ G +G +F +GA L N+ L + + + +++ +
Sbjct: 274 GTFGSIASFVFNTAIAAGASGAIFGCLGALLYLAISNRKLFFRTMGTNIIVIILINLGIG 333
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
F +S +D HLG G++ GFL V+L
Sbjct: 334 FTVSG---IDNAGHLG----GLVGGFLAALAVRL 360
>gi|374581478|ref|ZP_09654572.1| putative membrane protein [Desulfosporosinus youngiae DSM 17734]
gi|374417560|gb|EHQ89995.1| putative membrane protein [Desulfosporosinus youngiae DSM 17734]
Length = 313
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 92/178 (51%), Gaps = 7/178 (3%)
Query: 225 YLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHS 284
+L I++S+++ V+L + + + + +GAK+N LI GE WR T MF+H
Sbjct: 134 FLTYIIISVNLIVYLLMTLAGGSTDQ----RVLIEFGAKVNSLIQAGEIWRFFTSMFIHI 189
Query: 285 GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFA 344
G H+ + +A + GP + + +G + FF IY+L G+ G++ SF +P + G +G +F
Sbjct: 190 GFMHLIFNLYAFWSLGPFIEERFGHWRFFTIYSLSGLGGSIASFFFSPALSAGASGAIFG 249
Query: 345 IIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
++GA Y + L + + +++ + +D +AHLG TGII
Sbjct: 250 LLGALFYYSIKRPSLWKSGLGMNLVLVLLINLGFGLTMPG---IDNFAHLGGLLTGII 304
>gi|23099378|ref|NP_692844.1| hypothetical protein OB1923 [Oceanobacillus iheyensis HTE831]
gi|22777607|dbj|BAC13879.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 518
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 95/216 (43%), Gaps = 41/216 (18%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK N LI+ GEWWRL+T MFLH G H+ ++ AL G V + +G F +IY LGG
Sbjct: 218 GAKYNPLIMEGEWWRLLTSMFLHIGFVHILMNMVALFYLGTAVERIFGRTRFLVIYFLGG 277
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
I+G++ SF + + G +G +F + GA L + KD+ + + +++ + F
Sbjct: 278 IAGSIASFATSISISAGASGAIFGLFGALLFFGLIYKDVFKDTMGMNIVFILVVNLVIGF 337
Query: 381 IISNFGPVDTWAH-------------------------LGAAFTGII-------YGF--- 405
I +D AH LGA II YGF
Sbjct: 338 SIP---EIDMGAHLGGLLGGFLIAACLYVPGKKNGKYQLGAIIAFIILCSGLLMYGFDNN 394
Query: 406 ---LTCPLVQLGDASSRNSQEEGITLIRQYANPCKS 438
L L+++ + S N EE I L N KS
Sbjct: 395 ASSLEFKLIEVEEKLSDNQFEEAIDLSTNALNELKS 430
>gi|47095921|ref|ZP_00233524.1| rhomboid family protein [Listeria monocytogenes str. 1/2a F6854]
gi|254912011|ref|ZP_05262023.1| rhomboid family protein [Listeria monocytogenes J2818]
gi|254936338|ref|ZP_05268035.1| rhomboid family protein [Listeria monocytogenes F6900]
gi|258611432|ref|ZP_05232285.2| rhomboid family protein [Listeria monocytogenes FSL N3-165]
gi|386043648|ref|YP_005962453.1| rhomboid family protein [Listeria monocytogenes 10403S]
gi|386046989|ref|YP_005965321.1| rhomboid family protein [Listeria monocytogenes J0161]
gi|386050313|ref|YP_005968304.1| rhomboid family protein [Listeria monocytogenes FSL R2-561]
gi|386053590|ref|YP_005971148.1| rhomboid family protein [Listeria monocytogenes Finland 1998]
gi|47015667|gb|EAL06597.1| rhomboid family protein [Listeria monocytogenes str. 1/2a F6854]
gi|258599975|gb|EEW13300.1| rhomboid family protein [Listeria monocytogenes FSL N3-165]
gi|258608928|gb|EEW21536.1| rhomboid family protein [Listeria monocytogenes F6900]
gi|293589976|gb|EFF98310.1| rhomboid family protein [Listeria monocytogenes J2818]
gi|345533980|gb|AEO03421.1| rhomboid family protein [Listeria monocytogenes J0161]
gi|345536882|gb|AEO06322.1| rhomboid family protein [Listeria monocytogenes 10403S]
gi|346424159|gb|AEO25684.1| rhomboid family protein [Listeria monocytogenes FSL R2-561]
gi|346646241|gb|AEO38866.1| rhomboid family protein [Listeria monocytogenes Finland 1998]
Length = 518
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 220 WGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLILLLG 279
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 280 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----VSIASLVAI 334
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 335 NLLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 366
>gi|16803377|ref|NP_464862.1| hypothetical protein lmo1337 [Listeria monocytogenes EGD-e]
gi|284801722|ref|YP_003413587.1| hypothetical protein LM5578_1476 [Listeria monocytogenes 08-5578]
gi|284994864|ref|YP_003416632.1| hypothetical protein LM5923_1429 [Listeria monocytogenes 08-5923]
gi|404283828|ref|YP_006684725.1| rhomboid family protein [Listeria monocytogenes SLCC2372]
gi|404410635|ref|YP_006696223.1| rhomboid family protein [Listeria monocytogenes SLCC5850]
gi|405758384|ref|YP_006687660.1| rhomboid family protein [Listeria monocytogenes SLCC2479]
gi|16410753|emb|CAC99415.1| lmo1337 [Listeria monocytogenes EGD-e]
gi|284057284|gb|ADB68225.1| hypothetical protein LM5578_1476 [Listeria monocytogenes 08-5578]
gi|284060331|gb|ADB71270.1| hypothetical protein LM5923_1429 [Listeria monocytogenes 08-5923]
gi|404230461|emb|CBY51865.1| rhomboid family protein [Listeria monocytogenes SLCC5850]
gi|404233330|emb|CBY54733.1| rhomboid family protein [Listeria monocytogenes SLCC2372]
gi|404236266|emb|CBY57668.1| rhomboid family protein [Listeria monocytogenes SLCC2479]
gi|441471011|emb|CCQ20766.1| Rhomboid protease gluP [Listeria monocytogenes]
gi|441474138|emb|CCQ23892.1| Rhomboid protease gluP [Listeria monocytogenes N53-1]
Length = 512
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 214 WGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLILLLG 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 274 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----VSIASLVAI 328
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 329 NLLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 360
>gi|404413413|ref|YP_006699000.1| rhomboid family protein [Listeria monocytogenes SLCC7179]
gi|404239112|emb|CBY60513.1| rhomboid family protein [Listeria monocytogenes SLCC7179]
Length = 512
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 214 WGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLILLLG 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 274 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----VSIASLVAI 328
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 329 NLLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 360
>gi|451820893|ref|YP_007457094.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451786872|gb|AGF57840.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 512
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFG--FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGL 286
IL+++++ +F + I + E G + L +G+K N I+ G++WR +TPMFLH+ +
Sbjct: 187 ILIALNLFIF---VIMGIYSWETGIDYNKLLFEFGSKENTSIIQGQYWRFITPMFLHANI 243
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAII 346
HVAL+C+ L G + +G F IY + GI GN+ SF P VG +G +F +
Sbjct: 244 MHVALNCYTLYLIGKLSERIFGKAKFITIYFIAGILGNIFSFAFNSNPGVGASGAIFGLF 303
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGF 405
GA L + L + + +++ F S +D +AHLG G+I GF
Sbjct: 304 GAVLFKCIEKPALFKSGLGPNILGAILINLFYGFSKSG---IDNFAHLG----GLIGGF 355
>gi|199597186|ref|ZP_03210618.1| Membrane-associated serine protease [Lactobacillus rhamnosus HN001]
gi|258508700|ref|YP_003171451.1| membrane-associated serine protease [Lactobacillus rhamnosus GG]
gi|385828361|ref|YP_005866133.1| hypothetical protein [Lactobacillus rhamnosus GG]
gi|199591990|gb|EDZ00065.1| Membrane-associated serine protease [Lactobacillus rhamnosus HN001]
gi|257148627|emb|CAR87600.1| Membrane-associated serine protease [Lactobacillus rhamnosus GG]
gi|259650006|dbj|BAI42168.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
Length = 229
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 116/218 (53%), Gaps = 16/218 (7%)
Query: 217 RTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRL 276
R+ ++ Y+ + ++++ + VF+ E S + ++ + YGA+ N LIL G+WWRL
Sbjct: 7 RSRFQNSAYVTNGILAVTILVFILETLSGGSTNN----AVLVTYGARANPLILYGQWWRL 62
Query: 277 VTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-T 335
+TP+F+H GL H+ ++ ++L G + +G + FFL+Y + G +GN+ SF +P
Sbjct: 63 ITPVFVHIGLTHILMNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLA 122
Query: 336 VGGTGPVFAIIGAWLIY-QFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 394
G + +F ++GA L+ ++ + + ++ + +L+ A + S VD + H+
Sbjct: 123 AGASTAIFGLLGACLMLGDTYRENPVIRQLARQFLLLVVLNLAFNLFSSG---VDIYGHI 179
Query: 395 GAAFTGIIYGFLTCPLV---QLGDASSRNSQEEGITLI 429
G G++ GFL ++ LG S+ ITLI
Sbjct: 180 G----GLLGGFLAAGMLGAPALGRMSTGRRLASTITLI 213
>gi|239827720|ref|YP_002950344.1| rhomboid family protein [Geobacillus sp. WCH70]
gi|239808013|gb|ACS25078.1| Rhomboid family protein [Geobacillus sp. WCH70]
Length = 389
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 7/154 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LI GEWWR TP+FLH G H+ ++ +AL G V + YG + FF IY +
Sbjct: 215 YGAKFNPLIQEGEWWRFFTPIFLHIGFLHLLMNTFALYYLGMTVERLYGSWRFFFIYLIA 274
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G G L SFL T + G +G +F + GA L + + L + + + I++
Sbjct: 275 GFFGTLGSFLFTTSLSAGASGAIFGLFGALLYFGTVYRHLFFQTIGTNIIGLIIINLLFG 334
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
++ +D H+G G+I GFL +V L
Sbjct: 335 IMVPG---IDNAGHIG----GLIGGFLASGIVHL 361
>gi|399889571|ref|ZP_10775448.1| hypothetical protein CarbS_13682 [Clostridium arbusti SL206]
Length = 323
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 107/200 (53%), Gaps = 11/200 (5%)
Query: 214 ALQRTEETSNLYLISI-LVSIDVAVFLFEIASPIRNSEFGFFSLPLL--YGAKINELILV 270
++ N Y+++ +++I++ V+ + S I +S F + +L GAK N LI
Sbjct: 125 SINNNRVQHNKYIVTYAIIAINIVVY---VISAILSSNFFDIDIRVLDFLGAKDNTLINS 181
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GE++RL T MFLHSG+ H+A + ++L + G V +G + ++Y L G+ +L S++
Sbjct: 182 GEYYRLFTCMFLHSGIVHIASNMYSLYSIGGLVESIFGRKKYIIMYLLSGLIASLFSYVF 241
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VD 389
+ +VG +G +F ++G L+ + K I K +F+ I A++ IS P +D
Sbjct: 242 SSGISVGASGAIFGVLGGVLVISHKLKHRIGKG----LFRNIIFVIAINLFISFTIPNID 297
Query: 390 TWAHLGAAFTGIIYGFLTCP 409
AHLG +GII + P
Sbjct: 298 ISAHLGGLISGIIISWFIFP 317
>gi|298706212|emb|CBJ29253.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 269
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 15/217 (6%)
Query: 196 GYRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFS 255
GYR R+ G R ++R A + + ++L++++ V+LF++ P ++ G+
Sbjct: 31 GYRR-RSVFGRRPVQRRQAGG-SGGQGGITATNVLLALNAIVYLFQMRYPA-ITKAGWKM 87
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
P + G+W+RL+TP+ LH H+A++ + + GP V + G F +
Sbjct: 88 AP--------AITQQGQWYRLLTPIVLHGSFTHLAVNSMSFSSVGPVVERVMGKAKFVTV 139
Query: 316 YTLGGISGNLTSFLHTPE-PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL 374
YTL GI+GN+ S + P P+VG +G +F ++GAW + N+ ++ ++ S+R + +
Sbjct: 140 YTLAGIAGNVLSCIVNPRTPSVGASGAIFGMVGAWGAFCLMNETVLGRNNSQRALRN-VA 198
Query: 375 STALSFIISNFGP--VDTWAHLGAAFTGIIYGFLTCP 409
T + ++ G +D HLG G FL P
Sbjct: 199 QTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGP 235
>gi|253682458|ref|ZP_04863255.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
gi|253562170|gb|EES91622.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
Length = 200
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 85/141 (60%), Gaps = 3/141 (2%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA N L+ G+++RL+T MFLH GL H+ L+ +AL GP + KSYG + +IY LGG
Sbjct: 50 GANENTLVASGQYYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKYIIIYLLGG 109
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
+ +++SF+ + ++G +G +F+++GA L+ + + ++ KD + + +++ +
Sbjct: 110 LISSISSFIFSNGVSIGASGAIFSLLGAILVLTIKMRSVVGKDTIKNVISVIVVNIFIGL 169
Query: 381 IISNFGPVDTWAHLGAAFTGI 401
I N +D +AH+G G+
Sbjct: 170 AIPN---IDNFAHVGGLLGGV 187
>gi|110803398|ref|YP_698757.1| rhomboid family protein [Clostridium perfringens SM101]
gi|110683899|gb|ABG87269.1| rhomboid family protein [Clostridium perfringens SM101]
Length = 342
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 4/145 (2%)
Query: 261 GAKINE-LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GAK N +I GE++RLVT MFLHSG+ H+ + +AL G + + YG + +IY +
Sbjct: 190 GAKHNNAIIFHGEYYRLVTSMFLHSGIVHLLFNMYALYILGDFIERIYGAKKYLVIYFVS 249
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI ++ S +P VG +G +F ++GA L++ + KD I K + + +L+ +
Sbjct: 250 GIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRIGKALVTNIIVIILLNVFIG 309
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYG 404
+SN +D AH G G I G
Sbjct: 310 LSMSN---IDISAHFGGFIAGAILG 331
>gi|416361193|ref|ZP_11682501.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
gi|338194390|gb|EGO86853.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
Length = 200
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 85/141 (60%), Gaps = 3/141 (2%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA N L+ G+++RL+T MFLH GL H+ L+ +AL GP + KSYG + +IY LGG
Sbjct: 50 GANENTLVASGQYYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKYIIIYLLGG 109
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
+ +++SF+ + ++G +G +F+++GA L+ + + ++ KD + + +++ +
Sbjct: 110 LISSISSFIFSNGVSIGASGAIFSLLGAILVLTIKMRSVVGKDTIKNVISVIVVNIFIGL 169
Query: 381 IISNFGPVDTWAHLGAAFTGI 401
I N +D +AH+G G+
Sbjct: 170 AIPN---IDNFAHVGGLLGGV 187
>gi|423100417|ref|ZP_17088124.1| peptidase, S54 family [Listeria innocua ATCC 33091]
gi|370793418|gb|EHN61256.1| peptidase, S54 family [Listeria innocua ATCC 33091]
Length = 518
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 220 WGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILILLLG 279
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 280 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----TSIASLVAI 334
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 335 NLLIDVFSTQIDIAGHIG----GLVGGFLLAGALSL 366
>gi|16800442|ref|NP_470710.1| hypothetical protein lin1374 [Listeria innocua Clip11262]
gi|422415832|ref|ZP_16492789.1| rhomboid family protein [Listeria innocua FSL J1-023]
gi|16413847|emb|CAC96605.1| lin1374 [Listeria innocua Clip11262]
gi|313623901|gb|EFR94013.1| rhomboid family protein [Listeria innocua FSL J1-023]
Length = 512
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 214 WGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILILLLG 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 274 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----TSIASLVAI 328
Query: 379 SFIISNFG-PVDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 329 NLLIDVFSTQIDIAGHIG----GLVGGFLLAGALSL 360
>gi|302823732|ref|XP_002993515.1| hypothetical protein SELMODRAFT_431594 [Selaginella moellendorffii]
gi|300138646|gb|EFJ05407.1| hypothetical protein SELMODRAFT_431594 [Selaginella moellendorffii]
Length = 280
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
+L+GAK+N LI G+ WRL+TP FLH L H+ L+C+++ + GP + G F +++
Sbjct: 79 ILWGAKVNNLIAKGQIWRLLTPAFLHVNLIHLLLNCYSVHSLGPHLESLGGSKRFLVVFA 138
Query: 318 LGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
+ ++ + SFL P VG +G + +IGA +Y F+++ L+ K ++ + + A
Sbjct: 139 VAAVTTSCLSFLMCKSPAVGASGAICGLIGALAVYSFRHRKLLNK--AQENLGRISRTVA 196
Query: 378 LSFIISNFG-PVDTWAHLGAAFTG 400
+ ++ VD W HLG G
Sbjct: 197 FNMVLGLMSHEVDNWGHLGGFVGG 220
>gi|168181264|ref|ZP_02615928.1| peptidase, S54 family [Clostridium botulinum Bf]
gi|237793720|ref|YP_002861272.1| putative membrane associated peptidase [Clostridium botulinum Ba4
str. 657]
gi|182675329|gb|EDT87290.1| peptidase, S54 family [Clostridium botulinum Bf]
gi|229262482|gb|ACQ53515.1| putative membrane associated peptidase [Clostridium botulinum Ba4
str. 657]
Length = 342
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N I GE++RL+T MFLH GL H+AL+ +AL GP V +G + +IY + G
Sbjct: 190 GAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGKVKYLIIYFISG 249
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
I + S+L + ++G +G +F I+GA LI + N+ K+ + +++ L F
Sbjct: 250 ILSSYFSYLFSASVSIGASGAIFGILGATLIIAYTNRKKGGKEFLNNIISVIVVNLILGF 309
Query: 381 IISN 384
I N
Sbjct: 310 SIPN 313
>gi|46907563|ref|YP_013952.1| rhomboid family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|424714211|ref|YP_007014926.1| Rhomboid family protein [Listeria monocytogenes serotype 4b str.
LL195]
gi|46880831|gb|AAT04129.1| rhomboid family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|424013395|emb|CCO63935.1| Rhomboid family protein [Listeria monocytogenes serotype 4b str.
LL195]
Length = 518
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 220 WGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLG 279
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 280 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----VSIASLVAI 334
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 335 NLLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 366
>gi|422809417|ref|ZP_16857828.1| rhomboid family protein [Listeria monocytogenes FSL J1-208]
gi|378753031|gb|EHY63616.1| rhomboid family protein [Listeria monocytogenes FSL J1-208]
Length = 518
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 80/155 (51%), Gaps = 9/155 (5%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 220 WGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLG 279
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GN+ SF +VG + VFA++GA L +L AK + + A++
Sbjct: 280 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIGVSIAS----LVAIN 335
Query: 380 FIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+I F +D H+G G++ GFL + L
Sbjct: 336 LLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 366
>gi|47093617|ref|ZP_00231374.1| rhomboid family protein [Listeria monocytogenes str. 4b H7858]
gi|254932348|ref|ZP_05265707.1| rhomboid family protein [Listeria monocytogenes HPB2262]
gi|258611754|ref|ZP_05241962.2| rhomboid family protein [Listeria monocytogenes FSL R2-503]
gi|300765423|ref|ZP_07075405.1| rhomboid family protein [Listeria monocytogenes FSL N1-017]
gi|424823099|ref|ZP_18248112.1| Rhomboid family protein [Listeria monocytogenes str. Scott A]
gi|47017993|gb|EAL08769.1| rhomboid family protein [Listeria monocytogenes str. 4b H7858]
gi|258605928|gb|EEW18536.1| rhomboid family protein [Listeria monocytogenes FSL R2-503]
gi|293583904|gb|EFF95936.1| rhomboid family protein [Listeria monocytogenes HPB2262]
gi|300513860|gb|EFK40925.1| rhomboid family protein [Listeria monocytogenes FSL N1-017]
gi|332311779|gb|EGJ24874.1| Rhomboid family protein [Listeria monocytogenes str. Scott A]
Length = 518
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 220 WGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLG 279
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 280 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----VSIASLVAI 334
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 335 NLLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 366
>gi|422409553|ref|ZP_16486514.1| rhomboid family protein [Listeria monocytogenes FSL F2-208]
gi|313608952|gb|EFR84701.1| rhomboid family protein [Listeria monocytogenes FSL F2-208]
Length = 518
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 220 WGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLG 279
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 280 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----VSIASLVAI 334
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 335 NLLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 366
>gi|290893553|ref|ZP_06556536.1| rhomboid family protein [Listeria monocytogenes FSL J2-071]
gi|290556898|gb|EFD90429.1| rhomboid family protein [Listeria monocytogenes FSL J2-071]
Length = 518
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 80/155 (51%), Gaps = 9/155 (5%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 220 WGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLG 279
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GN+ SF +VG + VFA++GA L +L AK + + A++
Sbjct: 280 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIGVSIAS----LVAIN 335
Query: 380 FIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+I F +D H+G G++ GFL + L
Sbjct: 336 LLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 366
>gi|170761626|ref|YP_001785737.1| membrane associated peptidase [Clostridium botulinum A3 str. Loch
Maree]
gi|169408615|gb|ACA57026.1| putative membrane associated peptidase [Clostridium botulinum A3
str. Loch Maree]
Length = 341
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N I GE++RL+T MFLH GL H+AL+ +AL GP V +G + +IY + G
Sbjct: 190 GAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGKVKYLIIYFISG 249
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
I + S+L + ++G +G +F I+GA LI + N+ K+ + +++ L F
Sbjct: 250 ILSSYFSYLFSASVSIGASGAIFGILGATLIIAYTNRKKGGKEFLNNIISVIVVNLILGF 309
Query: 381 IISN 384
I N
Sbjct: 310 SIPN 313
>gi|422412807|ref|ZP_16489766.1| rhomboid family protein, partial [Listeria innocua FSL S4-378]
gi|313619110|gb|EFR90907.1| rhomboid family protein [Listeria innocua FSL S4-378]
Length = 472
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 214 WGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILILLLG 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GN+ SF +VG + VFA++GA L +L AK + + A++
Sbjct: 274 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIGTSIAS----LVAIN 329
Query: 380 FIISNFGP-VDTWAHLGAAFTGIIYGFLTC 408
+I F +D H+G G++ GFL
Sbjct: 330 LLIDVFSTQIDIAGHIG----GLVGGFLLA 355
>gi|404280891|ref|YP_006681789.1| rhomboid family protein [Listeria monocytogenes SLCC2755]
gi|404286756|ref|YP_006693342.1| rhomboid family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749679|ref|YP_006673145.1| rhomboid family protein [Listeria monocytogenes ATCC 19117]
gi|405755466|ref|YP_006678930.1| rhomboid family protein [Listeria monocytogenes SLCC2540]
gi|417317486|ref|ZP_12104103.1| rhomboid family protein [Listeria monocytogenes J1-220]
gi|328475056|gb|EGF45844.1| rhomboid family protein [Listeria monocytogenes J1-220]
gi|404218879|emb|CBY70243.1| rhomboid family protein [Listeria monocytogenes ATCC 19117]
gi|404224666|emb|CBY76028.1| rhomboid family protein [Listeria monocytogenes SLCC2540]
gi|404227526|emb|CBY48931.1| rhomboid family protein [Listeria monocytogenes SLCC2755]
gi|404245685|emb|CBY03910.1| rhomboid family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 512
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 214 WGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLG 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 274 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----VSIASLVAI 328
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 329 NLLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 360
>gi|402572950|ref|YP_006622293.1| hypothetical protein Desmer_2505 [Desulfosporosinus meridiei DSM
13257]
gi|402254147|gb|AFQ44422.1| putative membrane protein [Desulfosporosinus meridiei DSM 13257]
Length = 314
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 25/194 (12%)
Query: 225 YLISILVSIDVAVF-LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
+L +L I++ VF L +A N S+ + +GAK+N LI GE WR +T +F+H
Sbjct: 133 FLTYVLFGINIVVFILMTLAGGSENQ-----SVLIAFGAKVNPLIQAGELWRFLTSVFIH 187
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
G H+ + +AL + GP +++G + F +IY + G+ G++ S+ + + G +G +F
Sbjct: 188 IGFLHLLFNLYALWSLGPISERNFGHWRFLVIYIMSGLGGSIASYFFSTALSAGASGAIF 247
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG------PVDTWAHLGAA 397
++GA L Y + L + + + II NFG +D +AHLG
Sbjct: 248 GLLGALLYYSLKRPSLWKSGLGMNL---------VIVIIINFGFGLTQPGIDNYAHLG-- 296
Query: 398 FTGIIYGFLTCPLV 411
G+I GFLT L+
Sbjct: 297 --GLIIGFLTTMLL 308
>gi|303275255|ref|XP_003056925.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461277|gb|EEH58570.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 392
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 2/166 (1%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N I G+ +RLVTP+ LH H+ ++C +L GP + + +G +F +Y G
Sbjct: 204 GAKVNAEIAAGQVYRLVTPLLLHGSPLHLLVNCMSLHNLGPVIERQFGRDSFVGLYLASG 263
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
I GN S+ P VG +G +F ++GA +Y ++ DL V +R Q + S ++
Sbjct: 264 IGGNYLSYKMCPNNAVGASGAIFGLVGAMGVYLHRHSDLFGA-VGDRQLQSLLGSVGVNA 322
Query: 381 IISNFG-PVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEG 425
+ +D WAHLG TG P + + +A S E G
Sbjct: 323 LFGMMSRRIDNWAHLGGFLTGAFVAAAFGPNLIVLNAGSHAVSEGG 368
>gi|254824604|ref|ZP_05229605.1| rhomboid family protein [Listeria monocytogenes FSL J1-194]
gi|255520229|ref|ZP_05387466.1| rhomboid family protein [Listeria monocytogenes FSL J1-175]
gi|293593842|gb|EFG01603.1| rhomboid family protein [Listeria monocytogenes FSL J1-194]
Length = 518
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 220 WGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLG 279
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 280 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----VSIASLVAI 334
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 335 NLLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 366
>gi|226223938|ref|YP_002758045.1| hypothetical protein Lm4b_01345 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|386732075|ref|YP_006205571.1| rhomboid family protein [Listeria monocytogenes 07PF0776]
gi|405752554|ref|YP_006676019.1| rhomboid family protein [Listeria monocytogenes SLCC2378]
gi|406704108|ref|YP_006754462.1| rhomboid family protein [Listeria monocytogenes L312]
gi|225876400|emb|CAS05109.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|384390833|gb|AFH79903.1| rhomboid family protein [Listeria monocytogenes 07PF0776]
gi|404221754|emb|CBY73117.1| rhomboid family protein [Listeria monocytogenes SLCC2378]
gi|406361138|emb|CBY67411.1| rhomboid family protein [Listeria monocytogenes L312]
Length = 512
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 214 WGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLG 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 274 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----VSIASLVAI 328
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 329 NLLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 360
>gi|404407774|ref|YP_006690489.1| rhomboid family protein [Listeria monocytogenes SLCC2376]
gi|404241923|emb|CBY63323.1| rhomboid family protein [Listeria monocytogenes SLCC2376]
Length = 512
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 214 WGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLG 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 274 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----VSIASLVAI 328
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 329 NLLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 360
>gi|227534843|ref|ZP_03964892.1| S54 family peptidase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227187599|gb|EEI67666.1| S54 family peptidase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 282
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 109/209 (52%), Gaps = 15/209 (7%)
Query: 206 VRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKIN 265
VR + + R+ ++ Y+ + ++++ + VFL E S + S+ + YGA++N
Sbjct: 51 VRKETMNYSNWRSRLQNSAYVTNAILAVTILVFLLETFSGGSTNN----SVLVFYGARLN 106
Query: 266 ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL 325
LIL G+WWRL+TP+F+H GL H+ ++ ++L G + +G + FFL+Y + G +GN+
Sbjct: 107 PLILYGQWWRLMTPVFVHIGLMHILVNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNV 166
Query: 326 TSFLHTPEP-TVGGTGPVFAIIGAWLIY--QFQNKDLIAKDVSERMFQKAILSTALSFII 382
SF +P G + +F ++GA L+ F+ +I + + + + F
Sbjct: 167 ASFAFSPNTLAAGASTAIFGLLGACLMLGDSFKENPVIRQLARQFLLLVGLNLLFNLFS- 225
Query: 383 SNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
+D + H+G G++ GFL ++
Sbjct: 226 ---SGIDIFGHIG----GLLGGFLAAGML 247
>gi|386008108|ref|YP_005926386.1| rhomboid family protein [Listeria monocytogenes L99]
gi|307570918|emb|CAR84097.1| rhomboid family protein [Listeria monocytogenes L99]
Length = 512
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 214 WGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLG 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 274 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----VSIASLVAI 328
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 329 NLLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 360
>gi|217964517|ref|YP_002350195.1| rhomboid family protein [Listeria monocytogenes HCC23]
gi|386026709|ref|YP_005947485.1| hypothetical protein LMM7_1422 [Listeria monocytogenes M7]
gi|217333787|gb|ACK39581.1| rhomboid family protein [Listeria monocytogenes HCC23]
gi|336023290|gb|AEH92427.1| hypothetical protein LMM7_1422 [Listeria monocytogenes M7]
Length = 518
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 220 WGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLG 279
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-TAL 378
GI GN+ SF +VG + VFA++GA L +L AK + +I S A+
Sbjct: 280 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIG-----VSIASLVAI 334
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ +I F +D H+G G++ GFL + L
Sbjct: 335 NLLIDVFSSQIDIAGHIG----GLVGGFLLAGALSL 366
>gi|410455491|ref|ZP_11309370.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
bataviensis LMG 21833]
gi|409929185|gb|EKN66272.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
bataviensis LMG 21833]
Length = 519
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 57/93 (61%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK+N+LIL GEWWR +TP+FLH G H+A++ AL G V K +G F LIY
Sbjct: 214 YGAKVNQLILGGEWWRFITPIFLHIGFVHLAMNTLALYFLGTTVEKIFGSVRFLLIYLFA 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIY 352
G+ G + SF+ + + G +G ++ GA L +
Sbjct: 274 GVMGVIASFIFSSTLSAGASGAIYGCFGALLYF 306
>gi|168210042|ref|ZP_02635667.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
gi|170711841|gb|EDT24023.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
Length = 342
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Query: 261 GAKINE-LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GAK N +I GE++RLVT MFLH G+ H+ + +AL G + + YG + IY +
Sbjct: 190 GAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVS 249
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI ++ S +P VG +G +F ++GA L++ + KD I K + + +L+ +S
Sbjct: 250 GIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRIGKALVTNIIVIILLNVFIS 309
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYG 404
+SN +D AH G G I G
Sbjct: 310 LSMSN---IDISAHFGGFIAGAILG 331
>gi|386725483|ref|YP_006191809.1| hypothetical protein B2K_25730 [Paenibacillus mucilaginosus K02]
gi|384092608|gb|AFH64044.1| hypothetical protein B2K_25730 [Paenibacillus mucilaginosus K02]
Length = 383
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 16/209 (7%)
Query: 191 MGKLKGYRELRNKDGVRSLERDLALQRTE---ETSNLYLISILVSIDVAVFLFEIASPIR 247
+G L E R+ VR+ E L R E + L I+VAV+L A
Sbjct: 160 LGALNAAIERRHYAIVRAHEERLGRAREEIAGRRKGSPVTFALTGINVAVWLLMTA---- 215
Query: 248 NSEFGFFSLP---LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVC 304
+G P + +GAK N I GE+WR +TP+FLH G H+ + ALL+ G ++
Sbjct: 216 ---YGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLHLWFNLTALLSLGGRLE 272
Query: 305 KSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDV 364
+ G F L Y L GI+GN+ S+ +P + G +G +F ++G L+ + DL +
Sbjct: 273 RGIGSLRFALFYLLAGIAGNIASYTFSPSISAGASGAIFGLMGVLLVLSIMDPDLWGESG 332
Query: 365 SERMFQKAILSTALSFIISNFGPVDTWAH 393
++ ++ L FI+ +D +AH
Sbjct: 333 GMAIWGGLGMNVVLGFIVPG---IDNYAH 358
>gi|116872768|ref|YP_849549.1| rhomboid family membrane protein [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116741646|emb|CAK20770.1| rhomboid family membrane protein [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 512
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 214 WGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYILILLLG 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GN+ SF +VG + VFA++GA L +L AK + + A L
Sbjct: 274 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIGVSI---ASLVAVNL 330
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
FI +D H+G G++ GFL + L
Sbjct: 331 FIDLFSTQIDIAGHIG----GLVGGFLLAGALSL 360
>gi|229552508|ref|ZP_04441233.1| S54 family peptidase [Lactobacillus rhamnosus LMS2-1]
gi|258539881|ref|YP_003174380.1| membrane-associated serine protease [Lactobacillus rhamnosus Lc
705]
gi|385835529|ref|YP_005873303.1| rhomboid family protein [Lactobacillus rhamnosus ATCC 8530]
gi|229314060|gb|EEN80033.1| S54 family peptidase [Lactobacillus rhamnosus LMS2-1]
gi|257151557|emb|CAR90529.1| Membrane-associated serine protease [Lactobacillus rhamnosus Lc
705]
gi|355395020|gb|AER64450.1| rhomboid family protein [Lactobacillus rhamnosus ATCC 8530]
Length = 229
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 115/218 (52%), Gaps = 16/218 (7%)
Query: 217 RTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRL 276
R+ ++ Y+ + ++++ + VF+ E S + ++ + YGA+ N LIL G+WWRL
Sbjct: 7 RSRFQNSAYVTNGILAVTILVFILETLSGGSTNN----AVLVAYGARANPLILYGQWWRL 62
Query: 277 VTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-T 335
+TP+F+H GL H+ ++ ++L G + +G + FFL+Y + G +GN+ SF +P
Sbjct: 63 ITPVFVHIGLTHILMNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLA 122
Query: 336 VGGTGPVFAIIGAWLIY-QFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 394
G + +F ++GA L+ ++ + + ++ + +L+ A + S VD + H+
Sbjct: 123 AGASTAIFGLLGACLMLGDTYRENPVIRQLARQFLLLVVLNLAFNLFSSG---VDIYGHI 179
Query: 395 GAAFTGIIYGFLTCPLV---QLGDASSRNSQEEGITLI 429
G G++ GFL ++ LG + ITLI
Sbjct: 180 G----GLLGGFLAAGMLGAPALGRMGTGRRLASTITLI 213
>gi|333395939|ref|ZP_08477756.1| membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420145094|ref|ZP_14652570.1| Membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398403329|gb|EJN56584.1| Membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 223
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 10/174 (5%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
+ +GAK+N LI G+WWRL+ P+FLHSGL H+A++ L G Q+ +G + F LIY
Sbjct: 42 VFFGAKVNILIQQGQWWRLIMPIFLHSGLMHIAVNSVTLYFIGMQIESLFGHWRFTLIYL 101
Query: 318 LGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSER-MFQKAILST 376
L GI GN+ SF+ +VG + +F + GA+ F + ++ + R M Q+ L
Sbjct: 102 LSGIVGNIASFVFNMGISVGASTALFGLFGAF----FMLVEAFRQNTAIRAMGQQFALFI 157
Query: 377 ALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLI 429
L+ F P +D H+G G++ GFL +V + S + ITLI
Sbjct: 158 VLNLAFDLFNPGIDLAGHVG----GLLGGFLVANIVGVPRIRSVSVLRRIITLI 207
>gi|383761642|ref|YP_005440624.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381381910|dbj|BAL98726.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 260
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 102/186 (54%), Gaps = 9/186 (4%)
Query: 218 TEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLV 277
T+ + LI+ ++S+ +++FL+ + + +++ + +L GAK+NE + GE WRLV
Sbjct: 17 TQALMGIILITFVISVLLSLFLYGSWTSLTSTDI---RVLVLMGAKVNERLAAGELWRLV 73
Query: 278 TPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVG 337
TP+FLHSG+ H+ + +AL GP + G F ++ + G+ G L S+ + +VG
Sbjct: 74 TPIFLHSGVMHLLFNLYALYILGPMLEGYIGHVRFLAVFLISGLYGTLFSYALSGPVSVG 133
Query: 338 GTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII---SNFGPVDTWAHL 394
+G +F ++GA ++ + +D + Q ++ AL+ +I S++ +D W H+
Sbjct: 134 ASGAIFGLLGAIALFFLRYRDNFGPQ-GRAILQNMLIILALNLVIGFSSSY--IDNWGHI 190
Query: 395 GAAFTG 400
G G
Sbjct: 191 GGLIGG 196
>gi|386712717|ref|YP_006179039.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384072272|emb|CCG43762.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 256
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 21/203 (10%)
Query: 217 RTE---ETSNLY-LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLL-YGAKINELILVG 271
RTE E Y ++S LV I + +++ I +FGF +L LL +G +N LIL G
Sbjct: 4 RTESFREFLKFYPIVSTLVGIHLLLWIL-----IDFLQFGF-ALDLLRFGIGVNVLILEG 57
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
E+WRLVTP+FLH+G H + ++L+ FGP + + G F F +Y GI GNL +F+
Sbjct: 58 EYWRLVTPIFLHAGFAHALFNSFSLVLFGPALEQILGKFKFIFMYLFAGIVGNLGTFIVN 117
Query: 332 PEPT---VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P+ +G +G +F I G ++ K LI + S+ + IL ++F N +
Sbjct: 118 PDAYYQHLGASGAIFGIFGVYVFMVLFRKHLIDQANSQIVMVIFILGLFMTFTRPN---I 174
Query: 389 DTWAHLGAAFTGIIYGFLTCPLV 411
+ HL G+I GF P +
Sbjct: 175 NVLGHL----FGLIGGFAIAPTI 193
>gi|418070876|ref|ZP_12708151.1| membrane-associated serine protease [Lactobacillus rhamnosus R0011]
gi|423078786|ref|ZP_17067463.1| peptidase, S54 family [Lactobacillus rhamnosus ATCC 21052]
gi|357540296|gb|EHJ24313.1| membrane-associated serine protease [Lactobacillus rhamnosus R0011]
gi|357549074|gb|EHJ30922.1| peptidase, S54 family [Lactobacillus rhamnosus ATCC 21052]
Length = 229
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 115/218 (52%), Gaps = 16/218 (7%)
Query: 217 RTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRL 276
R+ ++ Y+ + ++++ + VF+ E S + ++ + YGA+ N LIL G+WWRL
Sbjct: 7 RSRFQNSAYVTNGILAVTILVFILETLSGGSTNN----AVLVTYGARANPLILYGQWWRL 62
Query: 277 VTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-T 335
+TP+F+H GL H+ ++ ++L G + +G + FFL+Y + G +GN+ SF +P
Sbjct: 63 ITPVFVHIGLTHILMNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLA 122
Query: 336 VGGTGPVFAIIGAWLIY-QFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 394
G + +F ++GA L+ ++ + + ++ + +L+ A + S VD + H+
Sbjct: 123 AGASTAIFGLLGACLMLGDTYRENPVIRQLARQFLLLVVLNLAFNLFSSG---VDIYGHI 179
Query: 395 GAAFTGIIYGFLTCPLV---QLGDASSRNSQEEGITLI 429
G G++ GFL ++ LG + ITLI
Sbjct: 180 G----GLLGGFLAAGMLGAPALGRMGTGRRLASTITLI 213
>gi|449017499|dbj|BAM80901.1| unknown rhomboid family protein [Cyanidioschyzon merolae strain
10D]
Length = 458
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 69/123 (56%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
++ GAK+N I GEW+RL TP+FLH H+ ++ +L + GPQ+ +YG + +Y
Sbjct: 276 VMAGAKVNAAIRTGEWYRLFTPLFLHGNTLHLIVNLSSLKSLGPQIEATYGHRRYAALYL 335
Query: 318 LGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
L G++GNL SF P+VG + +F +IGA + N D ++ S R+ + T
Sbjct: 336 LSGLTGNLFSFFFNTAPSVGASSAIFGLIGAMAAFYVSNTDWFGREHSHRVLRNIAWVTL 395
Query: 378 LSF 380
L+
Sbjct: 396 LNL 398
>gi|410725976|ref|ZP_11364264.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
gi|410601611|gb|EKQ56119.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
Length = 512
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 229 ILVSIDVAVF-LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
IL+++++ +F L + S +++ +L L +G+K NE IL GE+WR + P+FLH +
Sbjct: 187 ILIALNLLIFALMGLYSWKSGTDYN--TLLLEFGSKENEHILQGEYWRFIAPIFLHVNIV 244
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
HVAL+C++L G K +G F IY GI GN+ SF P G +G +F + G
Sbjct: 245 HVALNCYSLYLVGILAEKIFGKGKFIAIYFAAGILGNIFSFAFNMNPGAGASGAIFGLFG 304
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYG 404
A L + L + + I+ L + + G +D +AHLG G+ +
Sbjct: 305 AILFICIEKPALFKSGLGYNIV--GIICINLFYGFTKSG-IDNFAHLGGLIGGLTFA 358
>gi|409997508|ref|YP_006751909.1| S54 family peptidase [Lactobacillus casei W56]
gi|406358520|emb|CCK22790.1| S54 family peptidase [Lactobacillus casei W56]
Length = 285
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 108/209 (51%), Gaps = 15/209 (7%)
Query: 206 VRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKIN 265
VR + + R+ ++ Y+ + ++ + + VFL E S + S+ + YGA++N
Sbjct: 54 VRKETMNYSNWRSRLQNSAYVTNAILVVTILVFLLETFSGGSTNN----SVLVFYGARLN 109
Query: 266 ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL 325
LIL G+WWRL+TP+F+H GL H+ ++ ++L G + +G + FFL+Y + G +GN+
Sbjct: 110 PLILYGQWWRLMTPVFVHIGLMHILVNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNV 169
Query: 326 TSFLHTPEP-TVGGTGPVFAIIGAWLIY--QFQNKDLIAKDVSERMFQKAILSTALSFII 382
SF +P G + +F ++GA L+ F+ +I + + + + F
Sbjct: 170 ASFAFSPNTLAAGASTAIFGLLGACLMLGDSFKENPVIRQLARQFLLLVGLNLLFNLFS- 228
Query: 383 SNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
+D + H+G G++ GFL ++
Sbjct: 229 ---SGIDIFGHIG----GLLGGFLAAGML 250
>gi|347548722|ref|YP_004855050.1| hypothetical protein LIV_1288 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346981793|emb|CBW85766.1| Putative yqgP [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 512
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR +TP+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 214 WGGKFNPLIYAGEWWRFITPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYVLILILG 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GN+ SF +VG + VFA++GA L ++ AK + + ++ L
Sbjct: 274 GICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNVYAKTIGVSIASLVAVNLLLD 333
Query: 380 FIISNFGPVDTWAHLGAAFTG-IIYGFLTCP 409
S +D H+G G ++ G L+ P
Sbjct: 334 VFSSQ---IDIAGHIGGLAGGFLLAGALSLP 361
>gi|160901697|ref|YP_001567278.1| rhomboid family protein [Petrotoga mobilis SJ95]
gi|160359341|gb|ABX30955.1| Rhomboid family protein [Petrotoga mobilis SJ95]
Length = 226
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 99/188 (52%), Gaps = 14/188 (7%)
Query: 225 YLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHS 284
YLI + V I + +FLF S N + +L+GA++ LI GEW+RL+T MF+H
Sbjct: 8 YLIMLNVLIFIMMFLFGGLSAFSNPR-----IYILFGAQLGNLITAGEWFRLITSMFVHG 62
Query: 285 GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVF 343
GLFH+ + AL G V ++YG F IY L GI GNL + L P +VG +G +F
Sbjct: 63 GLFHIFFNMIALFYVGNIVERAYGKERFISIYMLSGIFGNLLTHLFLPNAISVGASGAIF 122
Query: 344 AIIGAWLIYQFQNKD-LIAKDVSERMFQKAILSTALSFIISNFGP---VDTWAHLGAAFT 399
+IG F++ I + V+ A+L L +I F P ++ +AHLG
Sbjct: 123 GLIGLLFGAGFRHDTPTILRPVTG----TALLPIILINVIWGFLPGANINNFAHLGGLGI 178
Query: 400 GIIYGFLT 407
G +G+LT
Sbjct: 179 GFTFGWLT 186
>gi|421768840|ref|ZP_16205550.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP2]
gi|421771007|ref|ZP_16207668.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP3]
gi|411185689|gb|EKS52816.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP2]
gi|411186442|gb|EKS53566.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP3]
Length = 229
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 115/218 (52%), Gaps = 16/218 (7%)
Query: 217 RTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRL 276
R+ ++ Y+ + ++++ + VF+ E S + ++ + YGA+ N LIL G+WWRL
Sbjct: 7 RSRFQNSAYVTNGILAVTILVFILETLSGGSTNN----AVLVTYGARANLLILYGQWWRL 62
Query: 277 VTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-T 335
+TP+F+H GL H+ ++ ++L G + +G + FFL+Y + G +GN+ SF +P
Sbjct: 63 ITPVFVHIGLTHILMNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLA 122
Query: 336 VGGTGPVFAIIGAWLIY-QFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 394
G + +F ++GA L+ ++ + + ++ + +L+ A + S VD + H+
Sbjct: 123 AGASTAIFGLLGACLMLGDTYRENPVIRQLARQFLLLVVLNLAFNLFSSG---VDIYGHI 179
Query: 395 GAAFTGIIYGFLTCPLV---QLGDASSRNSQEEGITLI 429
G G++ GFL ++ LG + ITLI
Sbjct: 180 G----GLLGGFLAAGMLGAPALGRMGTGRRLASTITLI 213
>gi|412988740|emb|CCO15331.1| Rhomboid family protein [Bathycoccus prasinos]
Length = 249
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 8/146 (5%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
AK+NE + G+++RL+T FLH GL H+ ++ +++ G V + +G + +TL +
Sbjct: 102 AKVNENVSNGQYYRLLTSAFLHGGLVHLFVNMYSVNAIGSAVERIFGKTHTYAAFTLSAL 161
Query: 322 SGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 381
SGN+ S+ + P VG +G +F + GA+ +Y +++KD++ E Q L T+L I
Sbjct: 162 SGNIASYKMSKYPAVGASGAIFGLAGAFAVYLYRHKDVLGSGAEE---QLNALGTSL-MI 217
Query: 382 ISNFGP----VDTWAHLGAAFTGIIY 403
+ +G VD WAH G G Y
Sbjct: 218 NAVYGATSARVDNWAHFGGLVGGCTY 243
>gi|297584599|ref|YP_003700379.1| rhomboid protease [Bacillus selenitireducens MLS10]
gi|297143056|gb|ADH99813.1| Rhomboid protease [Bacillus selenitireducens MLS10]
Length = 526
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 7/154 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK + IL GEWWR V+ MF+H G H+ ++ AL G V + +G FF IY L
Sbjct: 222 FGAKYDPAILDGEWWRFVSAMFIHIGPLHLFMNSLALFFLGAAVERIFGTGRFFGIYFLA 281
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G+ G++ SF+ + G +G +F + GA L + ++K L + + + ++
Sbjct: 282 GLFGSVASFVFNDNISAGASGAIFGLFGALLYFGVRHKKLFFRTMGMNILVILGINLVFG 341
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
F++ VD AH+G G+I GF+ +V L
Sbjct: 342 FVVP---MVDNGAHIG----GLIGGFIASSIVGL 368
>gi|336391270|ref|ZP_08572669.1| membrane-associated serine protease [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 209
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 10/172 (5%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK+N LI G+WWRL+ P+FLHSGL H+A++ L G Q+ +G + F LIY L
Sbjct: 30 FGAKVNILIQQGQWWRLIMPIFLHSGLMHIAVNSVTLYFIGMQIESLFGHWRFTLIYLLS 89
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSER-MFQKAILSTAL 378
GI GN+ SF+ +VG + +F + GA+ F + ++ + R M Q+ L L
Sbjct: 90 GIVGNIASFVFNTGISVGASTALFGLFGAF----FMLVEAFRQNTAIRAMGQQFALFIVL 145
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLI 429
+ F P +D H+G G++ GFL +V + S + ITLI
Sbjct: 146 NLAFDLFNPGIDLAGHVG----GLLGGFLVANIVGVPRIRSVSVLRRVITLI 193
>gi|149181994|ref|ZP_01860480.1| hypothetical protein BSG1_06322 [Bacillus sp. SG-1]
gi|148850259|gb|EDL64423.1| hypothetical protein BSG1_06322 [Bacillus sp. SG-1]
Length = 485
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 225 YLISILVSIDVAVF-LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
+ I +++ + VF + E+A +++E +L + +GAK N LI+ GEWWR TP+ +H
Sbjct: 157 FFTYIFIALQLLVFFVMEMAGGTQDTE----NL-IRFGAKYNPLIVDGEWWRFFTPIVIH 211
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
G H+ ++ +AL GP V + +G F IY G SG L SF+ + G +G +F
Sbjct: 212 IGFLHMLMNTFALYFLGPAVERIFGSARFLFIYLFAGFSGTLASFVFNDSLSAGASGAIF 271
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
GA L + + + + + + ++ A F I +D H+G G+
Sbjct: 272 GCFGALLYFGTAHPKIFFRTMGTNILVVIGINLAFGFTIPG---IDNAGHIG----GLAG 324
Query: 404 GFLTCPLVQL 413
G L+ +V L
Sbjct: 325 GALSAAIVHL 334
>gi|315282195|ref|ZP_07870654.1| rhomboid family protein, partial [Listeria marthii FSL S4-120]
gi|313614157|gb|EFR87842.1| rhomboid family protein [Listeria marthii FSL S4-120]
Length = 302
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 9/155 (5%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLH+GL H+A + L G + YG + + LI LG
Sbjct: 4 WGGKFNPLIYAGEWWRFISPIFLHNGLMHLASNAVMLYIVGAWAERIYGKWRYILILLLG 63
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GN+ SF +VG + VFA++GA L +L AK + + A++
Sbjct: 64 GICGNVASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIGVSIASL----VAIN 119
Query: 380 FIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+I F +D H+G G++ GFL + L
Sbjct: 120 LLIDVFSTQIDIAGHIG----GLVGGFLLAGALSL 150
>gi|347753198|ref|YP_004860763.1| Rhomboid family protein [Bacillus coagulans 36D1]
gi|347585716|gb|AEP01983.1| Rhomboid family protein [Bacillus coagulans 36D1]
Length = 377
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N LI+ G++WRL+TP+F+H G H+ ++ +L GP V + YG F LIY
Sbjct: 204 FGAKYNPLIMEGQYWRLITPVFIHIGFMHLFMNSLSLYYIGPLVERIYGKGRFALIYLFA 263
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G +G L SFL +P + G +G +F + GA L +DL + + + I++
Sbjct: 264 GFTGCLASFLFSPSLSAGASGAIFGLFGALLYIGTAYRDLFFRTMGSSVITLIIINLVFG 323
Query: 380 FIISN 384
F +S
Sbjct: 324 FSVSG 328
>gi|422874373|ref|ZP_16920858.1| rhomboid family protein [Clostridium perfringens F262]
gi|380304681|gb|EIA16968.1| rhomboid family protein [Clostridium perfringens F262]
Length = 342
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 261 GAKINE-LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GAK N +I GE++RLVT MFLH G+ H+ + +AL G + + YG + IY +
Sbjct: 190 GAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVS 249
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI ++ S +P VG +G +F ++GA L++ + KD I K + + +L+ +
Sbjct: 250 GIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRIGKALVTNIIVIILLNVFIG 309
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYG 404
+SN +D AH G G I G
Sbjct: 310 LSMSN---IDISAHFGGFIAGAILG 331
>gi|168214465|ref|ZP_02640090.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|168216839|ref|ZP_02642464.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|422346116|ref|ZP_16427030.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
gi|170714094|gb|EDT26276.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|182381088|gb|EDT78567.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|373226738|gb|EHP49060.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
Length = 342
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 261 GAKINE-LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GAK N +I GE++RLVT MFLH G+ H+ + +AL G + + YG + IY +
Sbjct: 190 GAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVS 249
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI ++ S +P VG +G +F ++GA L++ + KD I K + + +L+ +
Sbjct: 250 GIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRIGKALVTNIIVIILLNVFIG 309
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYG 404
+SN +D AH G G I G
Sbjct: 310 LSMSN---IDISAHFGGFIAGAILG 331
>gi|357158730|ref|XP_003578222.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 345
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 93/166 (56%), Gaps = 14/166 (8%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
++L+++++ ++ ++A+ + L++GAK+N LI GE+WRL T LH L
Sbjct: 143 NVLLAVNILAYIAQVATQGK---------LLMWGAKVNSLIDRGEFWRLATSSLLHGNLT 193
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+A +C++L + GP V GP F +Y ++G+L S+ P+VG +G +F ++G
Sbjct: 194 HLAFNCFSLNSIGPTVELVTGPRRFLAVYFTSALAGSLMSYCCCQSPSVGASGAIFGLVG 253
Query: 348 AWLIYQFQNKDLI--AKDVSERMFQKAILSTALSFIISNFGPVDTW 391
++ +Y +++K L+ K+ E + + IL+ + + +D W
Sbjct: 254 SYAVYTWRHKKLLGRGKESLEHIARVVILNMGMGLLSRG---IDNW 296
>gi|110799144|ref|YP_696141.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|168206356|ref|ZP_02632361.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
gi|169347261|ref|ZP_02866200.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|110673791|gb|ABG82778.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|169296657|gb|EDS78788.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|170662212|gb|EDT14895.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
Length = 342
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 261 GAKINE-LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GAK N +I GE++RLVT MFLH G+ H+ + +AL G + + YG + IY +
Sbjct: 190 GAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVS 249
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI ++ S +P VG +G +F ++GA L++ + KD I K + + +L+ +
Sbjct: 250 GIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRIGKALVTNIIVIILLNVFIG 309
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYG 404
+SN +D AH G G I G
Sbjct: 310 LSMSN---IDISAHFGGFIAGAILG 331
>gi|334880686|emb|CCB81452.1| integral membrane protein [Lactobacillus pentosus MP-10]
gi|339636895|emb|CCC15711.1| integral membrane protein [Lactobacillus pentosus IG1]
Length = 227
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 229 ILVSIDVAVFLFEI-----ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
I++ I VAVFL E A+ + N+ GAK N+ I G+WWR +TPMFLH
Sbjct: 17 IILGITVAVFLIEWLMGDGATLVFNA----------IGAKNNQAIAAGQWWRFITPMFLH 66
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
GL H+AL+ + G Q+ YG + +Y LGGISGN+ SF + +VG + F
Sbjct: 67 MGLTHIALNGVVIYFMGMQIEAMYGHWRMLALYMLGGISGNIMSFALSTNQSVGASTACF 126
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPVDTWAHL 394
A+ GA+L + V ++ + +L T L+ + F +D W H+
Sbjct: 127 ALFGAFLTI---GESFWENPVIRQLTNQFLLLTILNLVFDMFSNGIDIWGHV 175
>gi|417983680|ref|ZP_12624316.1| GlpG family membrane protein [Lactobacillus casei 21/1]
gi|410527949|gb|EKQ02811.1| GlpG family membrane protein [Lactobacillus casei 21/1]
Length = 227
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 106/198 (53%), Gaps = 15/198 (7%)
Query: 217 RTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRL 276
R+ ++ Y+ + ++++ ++VFL E S + S+ + YGA++N LIL G+WWRL
Sbjct: 7 RSRLQNSAYVTNAILAVTISVFLLETFSGGSTNN----SVLVFYGARLNPLILYGQWWRL 62
Query: 277 VTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-T 335
+TP+F+H GL H+ ++ ++L G + +G + FFL+Y + G +GN+ SF +P
Sbjct: 63 MTPVFVHIGLMHILVNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLA 122
Query: 336 VGGTGPVFAIIGAWLIY--QFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
G + +F ++GA L+ F+ +I + + + + F +D + H
Sbjct: 123 AGASTAIFGLLGACLMLGDSFKENPVIRQLARQFLLLVGLNLLFNLFSSG----IDIFGH 178
Query: 394 LGAAFTGIIYGFLTCPLV 411
+G G++ GFL ++
Sbjct: 179 IG----GLLGGFLAAGML 192
>gi|392948666|ref|ZP_10314270.1| membrane-bound protease, rhomboid family [Lactobacillus pentosus
KCA1]
gi|392436103|gb|EIW14023.1| membrane-bound protease, rhomboid family [Lactobacillus pentosus
KCA1]
Length = 218
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 229 ILVSIDVAVFLFEI-----ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
I++ I VAVFL E A+ + N+ GAK N+ I G+WWR +TPMFLH
Sbjct: 8 IILGITVAVFLIEWLIGDGATLVFNA----------IGAKNNQAIAAGQWWRFITPMFLH 57
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
GL H+AL+ + G Q+ YG + +Y LGGISGN+ SF + +VG + F
Sbjct: 58 MGLTHIALNGVVIYFMGMQIEAMYGHWRMLALYMLGGISGNIMSFALSTNQSVGASTACF 117
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPVDTWAHL 394
A+ GA+L + V ++ + +L T L+ + F +D W H+
Sbjct: 118 ALFGAFLTI---GESFWENPVIRQLTNQFLLLTILNLVFDMFSNGIDIWGHV 166
>gi|325289903|ref|YP_004266084.1| rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
gi|324965304|gb|ADY56083.1| Rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
Length = 189
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 15/155 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
+++GAK+N+LI +G++WRL+T +F+H G+ H+ L+ +AL+ G +G F L+Y
Sbjct: 39 VIFGAKVNQLIDLGQYWRLLTSIFIHIGIVHLLLNSYALIAVGQISEAVFGHLKFALLYL 98
Query: 318 LGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
L GI G S+L + + G +G +F ++GA + Y ++N M++ +++
Sbjct: 99 LSGIGGATASYLFSEAISAGASGAIFGLLGALVSYGWKNAG---------MWRSGLIANL 149
Query: 378 LSFIISN--FG----PVDTWAHLGAAFTGIIYGFL 406
L I N FG +D +AH+G TG+I G +
Sbjct: 150 LFVIGFNILFGLITTGIDNYAHIGGMLTGLIIGII 184
>gi|336114379|ref|YP_004569146.1| rhomboid family protein [Bacillus coagulans 2-6]
gi|335367809|gb|AEH53760.1| Rhomboid family protein [Bacillus coagulans 2-6]
Length = 355
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 143/317 (45%), Gaps = 36/317 (11%)
Query: 86 ASTKEK-LRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEIN 144
A+TK+K L +VR D ++L + D + + +I+ L R I
Sbjct: 4 ANTKKKNLPLVRLLRYDID-------WGNWLYRDIRDCCAQAEDLCKQIKRLAPRVLNIY 56
Query: 145 AKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKD 204
+E +D Y L+ + +T R+++ I + + KL+ + E R
Sbjct: 57 V-SEYAPVDDYEIYLDEPMHINGGKTELRSVL-----IEGENPGPGISKLRPFTESRLAI 110
Query: 205 GVRSLERD-LALQRTE---------------ETSNLYLISILVSIDVAVFL-FEIASPIR 247
++ D ALQRT + + + +++ +AVF+ + +
Sbjct: 111 APETMSGDAYALQRTVFEAEARREEEERQLFDAGRPFFTYVFLAVQIAVFIVMSLTGGTQ 170
Query: 248 NSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSY 307
N++ +L + +GAK N LI+ G++WRL+ P+F+H G+ H+ ++ +L GP V + Y
Sbjct: 171 NTQ----NL-IRFGAKYNPLIMEGQYWRLIMPVFIHIGIMHLFMNSLSLYYIGPLVERIY 225
Query: 308 GPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSER 367
G F LIY G +G L SFL +P + G +G +F + GA L +DL + +
Sbjct: 226 GKARFALIYLFAGFTGCLASFLFSPSLSAGASGAIFGLFGALLYIGTAYRDLFFRTMGSS 285
Query: 368 MFQKAILSTALSFIISN 384
+ I++ F +S
Sbjct: 286 VITLIIINLVFGFSVSG 302
>gi|379722713|ref|YP_005314844.1| hypothetical protein PM3016_4963 [Paenibacillus mucilaginosus 3016]
gi|378571385|gb|AFC31695.1| hypothetical protein PM3016_4963 [Paenibacillus mucilaginosus 3016]
Length = 383
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLP---LLYGAKINELILVGEWWRLVTPMFLHSGL 286
L I+VAV+L A +G P + +GAK N I GE+WR +TP+FLH G
Sbjct: 202 LTGINVAVWLLMTA-------YGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGG 254
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAII 346
H+ + ALL+ G ++ + G F L Y L GI+GN+ S+ +P + G +G +F ++
Sbjct: 255 LHLWFNSTALLSLGGRLERGIGSLRFALFYLLAGIAGNIASYTFSPSISAGASGAIFGLM 314
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
G L+ + DL + ++ ++ L FI+ +D +AH
Sbjct: 315 GVLLVLSIMDPDLWGESGGMAIWGGLGMNVVLGFIVPG---IDNYAH 358
>gi|337749843|ref|YP_004644005.1| hypothetical protein KNP414_05611 [Paenibacillus mucilaginosus
KNP414]
gi|336301032|gb|AEI44135.1| hypothetical protein KNP414_05611 [Paenibacillus mucilaginosus
KNP414]
Length = 383
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLP---LLYGAKINELILVGEWWRLVTPMFLHSGL 286
L I+VAV+L A +G P + +GAK N I GE+WR +TP+FLH G
Sbjct: 202 LTGINVAVWLLMTA-------YGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGG 254
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAII 346
H+ + ALL+ G ++ + G F L Y L GI+GN+ S+ +P + G +G +F ++
Sbjct: 255 LHLWFNSTALLSLGGRLERGIGSLRFALFYLLAGIAGNIASYTFSPSISAGASGAIFGLM 314
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
G L+ + DL + ++ ++ L FI+ +D +AH
Sbjct: 315 GVLLVLSIMDPDLWGESGGMAIWGGLGMNVVLGFIVPG---IDNYAH 358
>gi|417987040|ref|ZP_12627602.1| GlpG family membrane protein [Lactobacillus casei 32G]
gi|418011095|ref|ZP_12650861.1| GlpG family membrane protein [Lactobacillus casei Lc-10]
gi|410524104|gb|EKP99021.1| GlpG family membrane protein [Lactobacillus casei 32G]
gi|410552732|gb|EKQ26746.1| GlpG family membrane protein [Lactobacillus casei Lc-10]
Length = 227
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 105/198 (53%), Gaps = 15/198 (7%)
Query: 217 RTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRL 276
R+ ++ Y+ + ++++ + VFL E S + S+ + YGA++N LIL G+WWRL
Sbjct: 7 RSRLQNSAYVTNAILAVTILVFLLETFSGGSTNN----SVLVFYGARLNPLILYGQWWRL 62
Query: 277 VTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-T 335
+TP+F+H GL H+ ++ ++L G + +G + FFL+Y + G +GN+ SF +P
Sbjct: 63 ITPVFVHIGLMHILVNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLA 122
Query: 336 VGGTGPVFAIIGAWLIY--QFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
G + +F ++GA L+ F+ +I + + + + F +D + H
Sbjct: 123 AGASTAIFGLLGACLMLGDSFKENPVIRQLARQFLLLVGLNLLFNLFSSG----IDIFGH 178
Query: 394 LGAAFTGIIYGFLTCPLV 411
+G G++ GFL ++
Sbjct: 179 IG----GLLGGFLAAGML 192
>gi|115479511|ref|NP_001063349.1| Os09g0454100 [Oryza sativa Japonica Group]
gi|51535953|dbj|BAD38035.1| rhomboid-like protein [Oryza sativa Japonica Group]
gi|113631582|dbj|BAF25263.1| Os09g0454100 [Oryza sativa Japonica Group]
gi|218202268|gb|EEC84695.1| hypothetical protein OsI_31626 [Oryza sativa Indica Group]
gi|222641709|gb|EEE69841.1| hypothetical protein OsJ_29608 [Oryza sativa Japonica Group]
Length = 349
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 104/210 (49%), Gaps = 29/210 (13%)
Query: 184 KSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIA 243
S R Y+G+ G R G+ S +R +IL+++++ ++ +I
Sbjct: 118 NGSDRRYIGR--GKLPSRRPSGINSKKR-------------LWTNILLAVNILAYVAQIT 162
Query: 244 SPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQV 303
+ R L++GAKIN +I GE WRL T LH+ L H+A +C++L + GP V
Sbjct: 163 TQGR---------LLIWGAKINSMIDRGELWRLATSSLLHANLAHLAFNCFSLNSIGPMV 213
Query: 304 CKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLI--A 361
GP + +Y ++G+L S+ + P VG +G +F ++GA+ +Y ++++ +
Sbjct: 214 EMLTGPRRYLAVYFTSALAGSLMSYRYCASPAVGASGAIFGLVGAYAVYTWRHRRFLGHG 273
Query: 362 KDVSERMFQKAILSTALSFIISNFGPVDTW 391
K+ E + + IL+ + + +D W
Sbjct: 274 KESLEHIGRVVILNMGMGLLTRG---IDNW 300
>gi|403669619|ref|ZP_10934810.1| hypothetical protein KJC8E_12316 [Kurthia sp. JC8E]
Length = 206
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 17/186 (9%)
Query: 215 LQRTEETSN---LY-LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILV 270
RTE+ S+ LY ++S + I++AV+L + I N F GA IN LI
Sbjct: 2 FNRTEKLSDYIKLYPMVSTFLLINIAVYLVGLVPSIGNWIFA-------KGAAINFLIAQ 54
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GE+WR+VT +F+H G HV + + L FGP++ + G FF IY L GI GN+ +++
Sbjct: 55 GEYWRVVTAIFIHGGFMHVLSNMFWLYVFGPELERIAGKARFFTIYMLAGILGNVFTYIW 114
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P +VG +G +F I+GA+L + + I + + + ++S ++F+ N V
Sbjct: 115 QPLNYASVGASGAIFGILGAFLALVYYTRK-IFPQLKQMIVPLVVISVIITFLQPN---V 170
Query: 389 DTWAHL 394
+ AH+
Sbjct: 171 NVIAHI 176
>gi|297539145|ref|YP_003674914.1| Rhomboid family protein [Methylotenera versatilis 301]
gi|297258492|gb|ADI30337.1| Rhomboid family protein [Methylotenera versatilis 301]
Length = 346
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 13/219 (5%)
Query: 211 RDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLP----LLYGAKINE 266
+ L L + + ++++ ++ VF +A ++ + GF+ P L +GA
Sbjct: 2 QPLHLTLKSRVPQVTITKLIIAANILVF---VAMLVKGA--GFWHSPNAIQLAWGANFGP 56
Query: 267 LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT 326
GEWWRL T MFLH G+ H+ ++ W+L G V + YG F IY L G++GNL
Sbjct: 57 ATQDGEWWRLGTAMFLHFGIIHLLVNVWSLWDAGQLVERMYGHLRFAGIYVLSGLTGNLV 116
Query: 327 SFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN 384
S + V G +G +F + GA L + ++ + IA+ +F A + + + +
Sbjct: 117 SLVIQGNAAVSGGASGAIFGVYGALLTFLWRERQSIARHEFRWLFWGASVFSVATIVFGF 176
Query: 385 FGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
P +D AH+G TGI L +++ SRN++
Sbjct: 177 IVPGIDNSAHIGGFLTGIFSSILLSQSIEV-KPVSRNTK 214
>gi|422418937|ref|ZP_16495892.1| rhomboid family protein [Listeria seeligeri FSL N1-067]
gi|313633378|gb|EFS00218.1| rhomboid family protein [Listeria seeligeri FSL N1-067]
Length = 414
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI +G
Sbjct: 119 WGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYALILIIG 178
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GN+ SF ++G + VFA++GA L ++ AK + + ++ L
Sbjct: 179 GICGNIASFALNMNLSIGASTAVFAVMGALLYLVVLKPNVYAKTIGVSIASLVAVNLLLD 238
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
S +D H+G G++ GFL + L
Sbjct: 239 VFSSQ---IDIAGHIG----GLVGGFLLAGALSL 265
>gi|365925240|ref|ZP_09448003.1| rhomboid family integral membrane protein [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|420266562|ref|ZP_14769020.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|394425142|gb|EJE98158.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
Length = 216
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK+N LI+ G+WWRL+TPMFLH G H+ L+ L G Q+ G F +Y +
Sbjct: 37 FGAKVNTLIVAGQWWRLITPMFLHIGFEHIVLNMITLYFVGIQLENILGRGRFLAVYLVS 96
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI+GNL SF P+ G A+ G + IY + + M ++ +L L+
Sbjct: 97 GIAGNLASFAFNPDALSAGAST--ALFGLFGIYLMMGESFSSNPYIRAMGRQFLLLVVLN 154
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGF 405
+ +G VD H+G G + G+
Sbjct: 155 IMFGFYGSVDLAGHIGGLVGGFLMGY 180
>gi|116495142|ref|YP_806876.1| membrane-associated serine protease [Lactobacillus casei ATCC 334]
gi|239632021|ref|ZP_04675052.1| membrane-associated serine protease [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066706|ref|YP_003788729.1| membrane-associated serine protease [Lactobacillus casei str.
Zhang]
gi|417980317|ref|ZP_12620997.1| GlpG family membrane protein [Lactobacillus casei 12A]
gi|417989935|ref|ZP_12630432.1| GlpG family membrane protein [Lactobacillus casei A2-362]
gi|417993182|ref|ZP_12633532.1| GlpG family membrane protein [Lactobacillus casei CRF28]
gi|417996528|ref|ZP_12636807.1| GlpG family membrane protein [Lactobacillus casei M36]
gi|417999394|ref|ZP_12639604.1| GlpG family membrane protein [Lactobacillus casei T71499]
gi|418002337|ref|ZP_12642457.1| GlpG family membrane protein [Lactobacillus casei UCD174]
gi|418008258|ref|ZP_12648126.1| GlpG family membrane protein [Lactobacillus casei UW4]
gi|418013147|ref|ZP_12652800.1| GlpG family membrane protein [Lactobacillus casei Lpc-37]
gi|116105292|gb|ABJ70434.1| Membrane-associated serine protease [Lactobacillus casei ATCC 334]
gi|239526486|gb|EEQ65487.1| membrane-associated serine protease [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439113|gb|ADK18879.1| Membrane-associated serine protease [Lactobacillus casei str.
Zhang]
gi|410524640|gb|EKP99547.1| GlpG family membrane protein [Lactobacillus casei 12A]
gi|410532094|gb|EKQ06805.1| GlpG family membrane protein [Lactobacillus casei CRF28]
gi|410535374|gb|EKQ09999.1| GlpG family membrane protein [Lactobacillus casei M36]
gi|410536930|gb|EKQ11516.1| GlpG family membrane protein [Lactobacillus casei A2-362]
gi|410539414|gb|EKQ13947.1| GlpG family membrane protein [Lactobacillus casei T71499]
gi|410544317|gb|EKQ18647.1| GlpG family membrane protein [Lactobacillus casei UCD174]
gi|410547202|gb|EKQ21440.1| GlpG family membrane protein [Lactobacillus casei UW4]
gi|410556094|gb|EKQ30016.1| GlpG family membrane protein [Lactobacillus casei Lpc-37]
Length = 227
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 105/198 (53%), Gaps = 15/198 (7%)
Query: 217 RTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRL 276
R+ ++ Y+ + ++++ + VFL E S + S+ + YGA++N LIL G+WWRL
Sbjct: 7 RSRLQNSAYVTNAILAVTILVFLLETFSGGSTNN----SVLVFYGARLNPLILYGQWWRL 62
Query: 277 VTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-T 335
+TP+F+H GL H+ ++ ++L G + +G + FFL+Y + G +GN+ SF +P
Sbjct: 63 MTPVFVHIGLMHILVNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLA 122
Query: 336 VGGTGPVFAIIGAWLIY--QFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
G + +F ++GA L+ F+ +I + + + + F +D + H
Sbjct: 123 AGASTAIFGLLGACLMLGDSFKENPVIRQLARQFLLLVGLNLLFNLFSSG----IDIFGH 178
Query: 394 LGAAFTGIIYGFLTCPLV 411
+G G++ GFL ++
Sbjct: 179 IG----GLLGGFLAAGML 192
>gi|381210355|ref|ZP_09917426.1| hypothetical protein LGrbi_10556 [Lentibacillus sp. Grbi]
Length = 520
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 22/177 (12%)
Query: 260 YGAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
+GAK N I+ GEWWR+V MFLH G+ H+ ++ A+ G V + YG F +IY L
Sbjct: 215 FGAKYNPAIIEDGEWWRIVASMFLHIGILHLLMNMLAVYYLGTVVERIYGSLRFLIIYFL 274
Query: 319 GGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
GI G L SF T + G +G +F + GA L + + R+F + + L
Sbjct: 275 AGIGGGLASFAFTTNVSAGASGALFGLFGALLFFGC---------IHRRIFFQT-MGMNL 324
Query: 379 SFIIS---NFG----PVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITL 428
FII FG VD AH+G G+I GF+ ++ L +R Q + L
Sbjct: 325 LFIIGINIVFGLSVPQVDNGAHMG----GLITGFIASAILFLPKKKNRPIQLAAVIL 377
>gi|289434618|ref|YP_003464490.1| rhomboid family membrane protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289170862|emb|CBH27404.1| rhomboid family membrane protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 509
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI +G
Sbjct: 214 WGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYTLILIIG 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GN+ SF ++G + VFA++GA L ++ AK + + ++ L
Sbjct: 274 GICGNIASFALNMNLSIGASTAVFAVMGALLYLVVLKPNVYAKTIGVSIASLVAVNLLLD 333
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFL 406
S +D H+G G++ GFL
Sbjct: 334 VFSSQ---IDIAGHIG----GLVGGFL 353
>gi|422421998|ref|ZP_16498951.1| rhomboid family protein, partial [Listeria seeligeri FSL S4-171]
gi|313638066|gb|EFS03339.1| rhomboid family protein [Listeria seeligeri FSL S4-171]
Length = 424
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI +G
Sbjct: 129 WGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYALILIIG 188
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GN+ SF ++G + VFA++GA L ++ AK + + ++ L
Sbjct: 189 GICGNIASFALNMNLSIGASTAVFAVMGALLYLVVLKPNVYAKTIGVSIASLVAVNLLLD 248
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
S +D H+G G++ GFL + L
Sbjct: 249 VFSSQ---IDIAGHIG----GLVGGFLLAGALSL 275
>gi|89099189|ref|ZP_01172067.1| hypothetical protein B14911_07900 [Bacillus sp. NRRL B-14911]
gi|89086035|gb|EAR65158.1| hypothetical protein B14911_07900 [Bacillus sp. NRRL B-14911]
Length = 522
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 54/98 (55%)
Query: 255 SLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFL 314
S+ + YGAK N LIL GEWWR TP+ LH GL H+ ++ AL G V + YG F
Sbjct: 215 SVLIEYGAKYNPLILEGEWWRFFTPIVLHIGLLHLIMNTLALYYLGTAVERIYGSTRFLF 274
Query: 315 IYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIY 352
IY L G G L SFL + G +G +F GA L +
Sbjct: 275 IYILAGFMGALASFLFNSSVSAGASGAIFGCFGALLYF 312
>gi|116619460|ref|YP_821616.1| rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
gi|116222622|gb|ABJ81331.1| Rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
Length = 280
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 108/209 (51%), Gaps = 20/209 (9%)
Query: 220 ETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLP----LLYGAKINELILVGEWWR 275
T+ + L++I + I AVF + NS+ FF+L + +GAK + L+ GEWWR
Sbjct: 56 NTTIILLMNIGLYIVTAVFSLQSG----NSD-AFFNLDGRTLIAFGAKFDPLLAQGEWWR 110
Query: 276 LVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPT 335
LVT FLH G+ H+ ++ WAL G QV +++G ++IY + ++G S + +P +
Sbjct: 111 LVTAGFLHGGMLHIFMNTWALFGLGAQVEETFGSSRMWVIYFVATVTGFYASAVWSPALS 170
Query: 336 VGGTGPVFAIIGAWLIYQFQNKDLIAKDV-SERMFQKAILSTALSFIISNFGPVDTWAHL 394
VG + +F ++GA + + ++ S+ MF + L F I G +D AH+
Sbjct: 171 VGASAGIFGLLGAMIAFGVRHHGFTGDAFRSQYMFWAGL---NLLFGILGSGRIDNAAHI 227
Query: 395 GAAFTGIIYGFLTCPLVQLGDASSRNSQE 423
G G+I GF + + ++SR E
Sbjct: 228 G----GLIGGF---AVAYMAGSNSRRPWE 249
>gi|334182855|ref|NP_001185093.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
gi|332192482|gb|AEE30603.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
Length = 336
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 95/185 (51%), Gaps = 16/185 (8%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
++L++I+V +++ +IAS + L +GAKIN LI G+ WRL T LH+
Sbjct: 131 NVLLAINVIMYIAQIASDGK---------VLTWGAKINSLIERGQLWRLATASVLHANPM 181
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+ ++C++L + GP GP F +Y ++ + S+ P+VG +G +F ++G
Sbjct: 182 HLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVASSAMSYWFNKAPSVGASGAIFGLVG 241
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKA---ILSTALSFIISNFGPVDTWAHLGAAFTGIIYG 404
+ ++ ++K ++ + +E + Q A L+ A+ + +D W H+G G
Sbjct: 242 SVAVFVIRHKQMV-RGGNEDLMQIAQIIALNMAMGLMSRR---IDNWGHIGGLLGGTAMT 297
Query: 405 FLTCP 409
+L P
Sbjct: 298 WLLGP 302
>gi|157273306|gb|ABV27205.1| integral membrane protein Rhomboid family protein [Candidatus
Chloracidobacterium thermophilum]
Length = 386
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA +LI GE WRLV PMFLH G+ H+ + +AL GPQ+ YG F ++Y L
Sbjct: 64 FGACNRKLIAQGELWRLVVPMFLHIGVIHLVANMYALWVVGPQLESLYGSARFTILYVLS 123
Query: 320 GISGNLTS--FLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
GI G + S F H G +G +F + GA L++ ++ + I V M + L+ A
Sbjct: 124 GIGGFVASYFFAHPESIGAGASGALFGMFGALLVFVYKYRSEIPPLVRATMRRGVWLTLA 183
Query: 378 LSFIISNFGP-VDTWAHLGAAFTGI 401
L+ II+ P + H+G TGI
Sbjct: 184 LNLIITFSIPFISRSGHVGGLLTGI 208
>gi|159900030|ref|YP_001546277.1| rhomboid family protein [Herpetosiphon aurantiacus DSM 785]
gi|159893069|gb|ABX06149.1| Rhomboid family protein [Herpetosiphon aurantiacus DSM 785]
Length = 286
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 11/196 (5%)
Query: 229 ILVSIDVAVFLFEI---ASPIRNSEFGFFSLPLLYGAKINELI-LVGEWWRLVTPMFLHS 284
+ ++I+V +F+ I S + N+E F L L GAK + L+ + GEWWRL T LH
Sbjct: 35 VFMAINVVMFVICILQGMSVMGNTEGDAFVLIEL-GAKWSPLMDIGGEWWRLFTATVLHG 93
Query: 285 GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT--SFLHTPEPTVGGTGPV 342
G+ H+ + +AL GP V + YG F +IY + GI G SF P++G +G +
Sbjct: 94 GIVHIGFNMYALYALGPTVERFYGSLRFSVIYLIAGIGGAWASYSFGSLTGPSIGASGAI 153
Query: 343 FAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIS-NFGPV-DTWAHLGAAFTG 400
F +IG LI F + + D + + ++ + + A++ II +F V D +AH+G G
Sbjct: 154 FGLIGC-LIGFFLSARSVLGDFARQNLRQMVGTAAINLIIGLSFSSVIDNYAHIGGMLMG 212
Query: 401 IIYGFLTCP-LVQLGD 415
+ G+ P LV + D
Sbjct: 213 LAVGYGLAPRLVYIAD 228
>gi|302841472|ref|XP_002952281.1| hypothetical protein VOLCADRAFT_105418 [Volvox carteri f.
nagariensis]
gi|300262546|gb|EFJ46752.1| hypothetical protein VOLCADRAFT_105418 [Volvox carteri f.
nagariensis]
Length = 399
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
LL+G K+N LI G+ WRLVTP+FLHS FH+ ++ AL T GPQV G ++Y
Sbjct: 124 LLWGCKVNALIAAGQLWRLVTPLFLHSNAFHLLINMHALHTLGPQVEVVSGSKRTSVVYL 183
Query: 318 LGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
G+ +L SF+ +P P+VG +G VF + A ++ ++++D++ SE + L+ A
Sbjct: 184 ASGVLASLASFMWSPLPSVGASGAVFGLGAALGVFYWRHRDVLG-PASESGLRSLGLAAA 242
Query: 378 LSFIIS 383
++ S
Sbjct: 243 INIAYS 248
>gi|315302996|ref|ZP_07873713.1| rhomboid family protein, partial [Listeria ivanovii FSL F6-596]
gi|313628626|gb|EFR97042.1| rhomboid family protein [Listeria ivanovii FSL F6-596]
Length = 295
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 265 NELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN 324
N LI GEWWR +TP+FLHSGL H+A + L G + YG + + LI LGGI GN
Sbjct: 2 NPLIYAGEWWRFITPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYVLILILGGICGN 61
Query: 325 LTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN 384
+ SF +VG + VFA++GA L ++ AK + + ++ L S
Sbjct: 62 IASFTLNMNLSVGASTAVFAVMGALLYLVVLKPNIYAKTIGVSIASLVAINLLLDVFSSQ 121
Query: 385 FGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
+D H+G G++ GFL + L
Sbjct: 122 ---IDIAGHIG----GLVGGFLLAGALSL 143
>gi|191638648|ref|YP_001987814.1| S54 family peptidase [Lactobacillus casei BL23]
gi|385820364|ref|YP_005856751.1| substrate carrier family protein [Lactobacillus casei LC2W]
gi|418005386|ref|ZP_12645379.1| GlpG family membrane protein [Lactobacillus casei UW1]
gi|190712950|emb|CAQ66956.1| S54 family peptidase [Lactobacillus casei BL23]
gi|327382691|gb|AEA54167.1| substrate carrier family protein [Lactobacillus casei LC2W]
gi|410546783|gb|EKQ21027.1| GlpG family membrane protein [Lactobacillus casei UW1]
Length = 227
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 104/198 (52%), Gaps = 15/198 (7%)
Query: 217 RTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRL 276
R+ ++ Y+ + ++ + + VFL E S + S+ + YGA++N LIL G+WWRL
Sbjct: 7 RSRLQNSAYVTNAILVVTILVFLLETFSGGSTNN----SVLVFYGARLNPLILYGQWWRL 62
Query: 277 VTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-T 335
+TP+F+H GL H+ ++ ++L G + +G + FFL+Y + G +GN+ SF +P
Sbjct: 63 MTPVFVHIGLMHILVNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLA 122
Query: 336 VGGTGPVFAIIGAWLIY--QFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
G + +F ++GA L+ F+ +I + + + + F +D + H
Sbjct: 123 AGASTAIFGLLGACLMLGDSFKENPVIRQLARQFLLLVGLNLLFNLFSSG----IDIFGH 178
Query: 394 LGAAFTGIIYGFLTCPLV 411
+G G++ GFL ++
Sbjct: 179 IG----GLLGGFLAAGML 192
>gi|402298151|ref|ZP_10817865.1| hypothetical protein BalcAV_04560 [Bacillus alcalophilus ATCC
27647]
gi|401726654|gb|EJS99873.1| hypothetical protein BalcAV_04560 [Bacillus alcalophilus ATCC
27647]
Length = 249
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 108/213 (50%), Gaps = 21/213 (9%)
Query: 217 RTE--ETSNLY--LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGE 272
RTE ET +Y +I+ILV+I V +F + P E+ ++ +G +N + G+
Sbjct: 4 RTENFETFRMYYPVITILVAIHVLIFFWINLLP--GGEWIYY-----HGVGLNLAVHNGD 56
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL--- 329
+WRLVTP+F+H G HV + +L+ FGP + + G F F L+Y GI N+ ++
Sbjct: 57 YWRLVTPIFMHVGFMHVIFNSVSLILFGPPLEQMLGKFRFILLYLSSGIIANIATYYVGG 116
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
+G +G +F + GA+ KDLI + S+ + ++ ++F+ N ++
Sbjct: 117 LDYYAHLGASGAIFGLFGAYFYIVLNRKDLIDQTSSQMIMTILVIGLVMTFVNPN---IN 173
Query: 390 TWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
+AH+ A I G L PL+ +G + Q
Sbjct: 174 IYAHIFGA----IGGALMIPLILIGVKPYQRYQ 202
>gi|18310434|ref|NP_562368.1| rhomboid family protein [Clostridium perfringens str. 13]
gi|18145114|dbj|BAB81158.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 342
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Query: 261 GAKINE-LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GAK N +I GE++RLVT MFLH G+ H+ + +AL G + + YG + IY +
Sbjct: 190 GAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVS 249
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI ++ S +P VG +G +F ++GA L++ + KD I K + + +L+ +
Sbjct: 250 GIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRIGKALVTNIIVIILLNVFIG 309
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYG 404
+SN +D A G G I G
Sbjct: 310 LSMSN---IDISARFGGFIAGAILG 331
>gi|410728950|ref|ZP_11367038.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
gi|410596504|gb|EKQ51173.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
Length = 332
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 226 LISILVSIDVAVFLFE--IASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
L IL+ I+V +FL ++ I + G + + +GAK+N LI G+ WRL T FLH
Sbjct: 146 LTYILIGINVIIFLLTAFLSFDIYDINTG---ILIDFGAKVNILINQGQIWRLFTCAFLH 202
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPV 342
SGL H+A + ++L GPQ+ + +G + +IY ++ +L S+ +P +VG +G +
Sbjct: 203 SGLIHIACNMYSLYIIGPQIQQIFGTVKYLIIYACSCLTASLLSYYMSPNSISVGASGAI 262
Query: 343 FAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
F ++GA L + ++ I K + Q ++ + I N +D +AH
Sbjct: 263 FGLMGALLAFAIIERNRIQKRFLFSIMQVISINLFIGLSIKN---IDNFAH 310
>gi|414589617|tpg|DAA40188.1| TPA: rhomboid-like protein [Zea mays]
Length = 341
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 93/166 (56%), Gaps = 14/166 (8%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
++L++++V ++ ++AS + L++GAKIN LI G++WRL T LH+ L
Sbjct: 143 NVLLALNVLAYVAQVASQGK---------LLMWGAKINSLIDRGQFWRLATSSLLHANLT 193
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+A +C++L + GP V GP + +Y ++G+L S+ + P VG +G +F ++G
Sbjct: 194 HLAFNCFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVGASGAIFGLVG 253
Query: 348 AWLIYQFQNKDLI--AKDVSERMFQKAILSTALSFIISNFGPVDTW 391
A+ +Y ++++ +++ E + + +L+ + + +D W
Sbjct: 254 AYAVYMWRHRRFFGNSRESLEHIGRVVVLNMGMGLLSRG---IDNW 296
>gi|23098073|ref|NP_691539.1| hypothetical protein OB0618 [Oceanobacillus iheyensis HTE831]
gi|22776298|dbj|BAC12574.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 258
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
+YG N I G+WWRL+TP+FLH GL H+ + ++L+ FGP + + G F F L Y
Sbjct: 46 VYGIGFNAAIEAGQWWRLITPIFLHGGLMHMLFNSFSLVLFGPALEQMLGRFKFILAYLG 105
Query: 319 GGISGNLTSFLHTP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
I+ N+ F P +G +G +F + G ++ KDLI + S+ + +
Sbjct: 106 TAITANIAIFFLQPMSYAHLGASGAIFGLFGIYVFMVMYRKDLIDQSSSQMIAVIVGIGL 165
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIY 403
++FI N + HL +GIIY
Sbjct: 166 VMTFIRPN---ISILGHLFGFLSGIIY 189
>gi|25518651|pir||F86382 hypothetical protein F4F7.14 - Arabidopsis thaliana
Length = 373
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 108/211 (51%), Gaps = 24/211 (11%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
++L++I+V +++ +IAS + L +GAKIN LI G+ WRL T LH+
Sbjct: 157 NVLLAINVIMYIAQIASDGK---------VLTWGAKINSLIERGQLWRLATASVLHANPM 207
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGIS-------GNLTSFLHTPEPTVGGTG 340
H+ ++C++L + GP GP F +Y ++ G+ S+ P+VG +G
Sbjct: 208 HLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSYWFNKAPSVGASG 267
Query: 341 PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA---ILSTALSFIISNFGPVDTWAHLGAA 397
+F ++G+ ++ ++K ++ + +E + Q A L+ A+ + +D W H+G
Sbjct: 268 AIFGLVGSVAVFVIRHKQMV-RGGNEDLMQIAQIIALNMAMGLMSRR---IDNWGHIGGL 323
Query: 398 FTGIIYGFLTCPLVQLGDASSRNSQEEGITL 428
G +L P + + ++R++ ++G+ L
Sbjct: 324 LGGTAMTWLLGPQWKY-EYTTRDADDDGVQL 353
>gi|153938565|ref|YP_001389769.1| S54 family peptidase [Clostridium botulinum F str. Langeland]
gi|384460841|ref|YP_005673436.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
230613]
gi|152934461|gb|ABS39959.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
Langeland]
gi|295317858|gb|ADF98235.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
230613]
Length = 340
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N I GE++RL+T MFLH GL H+AL+ +AL GP V +G + +IY + G
Sbjct: 190 GAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGKVKYLIIYFISG 249
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
I + S+L + ++G +G +F I+GA LI + N+ K+ + +++ L F
Sbjct: 250 ILSSYFSYLFSSSVSIGASGAIFGILGATLIIAYTNRKKGGKEFLNNIISVIVVNLILGF 309
Query: 381 IISN 384
I N
Sbjct: 310 SIPN 313
>gi|226947631|ref|YP_002802722.1| peptidase, S54 [Clostridium botulinum A2 str. Kyoto]
gi|226842288|gb|ACO84954.1| peptidase, S54 [Clostridium botulinum A2 str. Kyoto]
Length = 340
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N I GE++RL+T MFLH GL H+AL+ +AL GP V +G + +IY + G
Sbjct: 190 GAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGKVKYLIIYFISG 249
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
I + S+L + ++G +G +F I+GA LI + N+ K+ + +++ L F
Sbjct: 250 ILSSYFSYLFSSSVSIGASGAIFGILGATLIIAYANRKKGGKEFLNNIISVIVVNLILGF 309
Query: 381 IISN 384
I N
Sbjct: 310 SIPN 313
>gi|168177744|ref|ZP_02612408.1| putative membrane associated peptidase [Clostridium botulinum NCTC
2916]
gi|387816637|ref|YP_005676981.1| membrane protein [Clostridium botulinum H04402 065]
gi|182671461|gb|EDT83435.1| putative membrane associated peptidase [Clostridium botulinum NCTC
2916]
gi|322804678|emb|CBZ02230.1| conserved membrane protein [Clostridium botulinum H04402 065]
Length = 340
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N I GE++RL+T MFLH GL H+AL+ +AL GP V +G + +IY + G
Sbjct: 190 GAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGKVKYLIIYFISG 249
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
I + S+L + ++G +G +F I+GA LI + N+ K+ + +++ L F
Sbjct: 250 ILSSYFSYLFSSSVSIGASGAIFGILGATLIIAYTNRKKGGKEFLNNIISVIVVNLILGF 309
Query: 381 IISN 384
I N
Sbjct: 310 SIPN 313
>gi|428163351|gb|EKX32426.1| hypothetical protein GUITHDRAFT_166710 [Guillardia theta CCMP2712]
Length = 353
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 8/155 (5%)
Query: 261 GAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GAKI +I+ +++RL+TP+FLH L H+ ++C++L GPQV + +G + Y L
Sbjct: 170 GAKITSMIVYERQYYRLLTPIFLHGSLSHILVNCFSLNAIGPQVERYFGTERTVITYLLA 229
Query: 320 GISGNLTSFLHTPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
GI+GN+ SF P+ P+VG +G +F ++GA ++ +++D+ D S M I +
Sbjct: 230 GIAGNVASFYFGPKLIPSVGASGAIFGLVGALGVFLARHQDIFG-DRSRYMLNGIIQTCI 288
Query: 378 LSFIISNFGP---VDTWAHLGAAFTGIIYGFLTCP 409
L+ II P +D W H+G A G + +L P
Sbjct: 289 LNLII-GLAPGSNIDNWGHIGGAIGGAVVAYLIGP 322
>gi|374995763|ref|YP_004971262.1| hypothetical protein Desor_3244 [Desulfosporosinus orientis DSM
765]
gi|357214129|gb|AET68747.1| putative membrane protein [Desulfosporosinus orientis DSM 765]
Length = 316
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 225 YLISILVSIDVAVF-LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
+L L+ I++ VF L +A +N E + + +GAK+N LIL GE WR T MF+H
Sbjct: 134 FLTYGLIGINLVVFFLMTLAGGSQNRE-----VLIAFGAKVNSLILAGEVWRFFTSMFIH 188
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
G H+ + +AL GP K +G + F +IY L G+ G++ SF T + G +G +F
Sbjct: 189 IGYLHLGFNLYALWVLGPFTEKLFGHWRFLVIYLLSGLGGSIASFFFTSGLSAGASGAIF 248
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
++GA L Y + L + + +L F ++ G +D +AH
Sbjct: 249 GLLGALLYYSLKRPWLWKSGLGMNLV--LVLVINFGFGLTQPG-IDNFAH 295
>gi|226503627|ref|NP_001148641.1| rhomboid-like protein [Zea mays]
gi|195621054|gb|ACG32357.1| rhomboid-like protein [Zea mays]
Length = 346
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 93/166 (56%), Gaps = 14/166 (8%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
++L++++V ++ ++AS + L++GAKIN LI G++WRL T LH+ L
Sbjct: 148 NVLLALNVLAYVAQVASQGK---------LLMWGAKINSLIDRGQFWRLATSSLLHANLT 198
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+A +C++L + GP V GP + +Y ++G+L S+ + P VG +G +F ++G
Sbjct: 199 HLAFNCFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRCSASPAVGASGAIFGLVG 258
Query: 348 AWLIYQFQNKDLI--AKDVSERMFQKAILSTALSFIISNFGPVDTW 391
A+ +Y ++++ +++ E + + +L+ + + +D W
Sbjct: 259 AYAVYMWRHRRFFGNSRESLEHIGRVVVLNMGMGLLSRG---IDNW 301
>gi|242044898|ref|XP_002460320.1| hypothetical protein SORBIDRAFT_02g026450 [Sorghum bicolor]
gi|241923697|gb|EER96841.1| hypothetical protein SORBIDRAFT_02g026450 [Sorghum bicolor]
Length = 341
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 92/166 (55%), Gaps = 14/166 (8%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
++L++++V ++ ++AS + LL+GAKIN LI G++WRL T LH+ L
Sbjct: 143 NVLLALNVLAYVAQVASQGK---------LLLWGAKINSLIDRGQFWRLATSSLLHADLT 193
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+A +C++L + GP V GP F +Y ++G+L S+ + P VG +G +F ++G
Sbjct: 194 HLAFNCFSLNSIGPMVEMLTGPRRFLAVYFSSALAGSLMSYRCSASPAVGASGAIFGLVG 253
Query: 348 AWLIYQFQNKDLI--AKDVSERMFQKAILSTALSFIISNFGPVDTW 391
A +Y ++++ +++ E + + +L+ + + +D W
Sbjct: 254 AHAVYMWRHRRFFGNSRESLEHIGRVVVLNMGMGLLSRG---IDNW 296
>gi|182627147|ref|ZP_02954861.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
gi|177907465|gb|EDT70134.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
Length = 342
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 261 GAKINE-LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GAK N +I GE++RLVT MFLH G+ H+ + +AL G + + YG + IY +
Sbjct: 190 GAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVS 249
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI ++ S +P VG +G +F ++GA L++ + KD I K + + +L+ +
Sbjct: 250 GIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRIGKALVTNIIVIILLNIFIG 309
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYG 404
+SN +D AH G G I G
Sbjct: 310 LSMSN---IDISAHFGGFIAGAILG 331
>gi|422018892|ref|ZP_16365443.1| hypothetical protein OO9_09318 [Providencia alcalifaciens Dmel2]
gi|414104078|gb|EKT65650.1| hypothetical protein OO9_09318 [Providencia alcalifaciens Dmel2]
Length = 680
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 92/215 (42%), Gaps = 37/215 (17%)
Query: 224 LYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
L L L++I V + A+P+ + E+ LL+GA + +L L G+WWR M LH
Sbjct: 33 LTLFIALINIGVYFYQLNFAAPLESQEYNL----LLFGANVYQLSLTGDWWRYPISMVLH 88
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL------------------ 325
SG H+ L+ ALL G + +++G + IY GI G
Sbjct: 89 SGWLHLGLNTLALLVIGIECERAFGKLRYLAIYLFAGIVGAFVSAAWQYQEALNSATRRF 148
Query: 326 -----TSFLHTPEP-----TVGGTGPVFAIIGA---WLIYQFQNKDLI--AKDVSERMFQ 370
+S L ++G +G + + A L+ Q N DL A+D +R
Sbjct: 149 DMMSWSSLLQNDNTVYITVSLGASGAIMGLAAASVIALLKQLNNPDLTKNARDTLKRPLY 208
Query: 371 KAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGF 405
I AL+ I VD AH+G A TG I GF
Sbjct: 209 NIIAMIALTLINGIQSGVDNAAHIGGAVTGAIIGF 243
>gi|433460288|ref|ZP_20417921.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432191744|gb|ELK48676.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 253
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 16/175 (9%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G +N +L GE+WRLVTP+FLH+G H + ++L+ FGP + + G F +Y
Sbjct: 46 WGMGVNVFVLNGEYWRLVTPIFLHAGFAHALFNSFSLVLFGPALEQMLGKVKFIALYLFA 105
Query: 320 GISGNLTSFLHTPEPT---VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
GI+GN+ +F+ P +G +G +F I G ++ + K LI + S+ + L
Sbjct: 106 GIAGNVGTFIVDPSAYYAHLGASGAIFGIFGVYIFMVWNRKHLIDQANSQIIGVIVALGL 165
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQ 431
++F+ N ++ HL G+I GF P+V RN++ I +R+
Sbjct: 166 FMTFVRPN---INILGHL----FGLIGGFAIAPVVL------RNARPFSIWQVRR 207
>gi|320163557|gb|EFW40456.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 1087
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+W+R ++P+FLH G+ H + QV +S G LI+ + GI G++ S +
Sbjct: 886 QWYRFISPIFLHVGIIHFIFVAIFENSVVGQVERSAGWLRTALIFFISGIGGDIISAIFV 945
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P +PTVGGTG +F +G + FQ+ L + V E + K IL ++ +I VD
Sbjct: 946 PNQPTVGGTGALFGFLGVLFVELFQSWQLCRRPVVELI--KLILLVVIALVIGLLPWVDN 1003
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
WAH+G F G++ G + P + G R +
Sbjct: 1004 WAHIGGFFFGVVAGIIFLPYIVFGKWDQRRKR 1035
>gi|187934985|ref|YP_001884978.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
gi|187723138|gb|ACD24359.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
Length = 321
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 9/179 (5%)
Query: 229 ILVSIDVAVFLFE--IASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGL 286
IL++++V +FL I+ I + ++ + +GAK N LI GE WRL+T FLH G+
Sbjct: 141 ILIAMNVIIFLLTAFISRRILTIDI---NVLINFGAKYNPLIYQGEIWRLITCAFLHGGI 197
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS-FLHTPEPTVGGTGPVFAI 345
H+ + ++L GPQV + +G + IY I+ +L S L+ +VG +G +F +
Sbjct: 198 AHLLSNMYSLYILGPQVERIFGLKKYLCIYFTSAITSSLLSVLLNENSVSVGASGAIFGL 257
Query: 346 IGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYG 404
+GA LI+ + + I K + IL F I +D H+G G+I G
Sbjct: 258 LGAILIFSIKERHRIKKGYILNLVGIIILILMSGFTIR---GIDNLGHIGGFLGGLIMG 313
>gi|148378401|ref|YP_001252942.1| membrane associated peptidase [Clostridium botulinum A str. ATCC
3502]
gi|148287885|emb|CAL81951.1| putative membrane associated peptidase [Clostridium botulinum A
str. ATCC 3502]
Length = 337
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N I GE++RL+T MFLH GL H+AL+ +AL GP V +G + +IY + G
Sbjct: 190 GAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGKVKYLIIYFISG 249
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
+ + S+L + ++G +G +F I+GA LI + N+ K+ + +++ L F
Sbjct: 250 VLSSYFSYLFSSSVSIGASGAIFGILGATLIIAYTNRKKGGKEFLNNIISVIVVNLILGF 309
Query: 381 IISN 384
I N
Sbjct: 310 SIPN 313
>gi|429503970|ref|YP_007185154.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429485560|gb|AFZ89484.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 199
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRLVTPMFLH+ H+ + +L F P + + G F ++Y + GI GN+ ++L
Sbjct: 56 GEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIVSGIIGNIGTYLA 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G ++ K+LI +D S+ + I++ +FI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLIIAVLSTFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NIMAHLFGLAGGFLLSFL 190
>gi|328866134|gb|EGG14520.1| beta-lactamase family protein [Dictyostelium fasciculatum]
Length = 490
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 225 YLISILVSIDVAVFLFEIA-----SPIR-NSEFGFFSLPLL-YGAKINELILVGEWWRLV 277
Y I ++ ID + ++EI P + N FG + LL GAK LIL GEWWR
Sbjct: 236 YFIILVSIIDTCLLIWEIVLNGGFEPWKTNPWFGPSASTLLNVGAKYAPLILYGEWWRFF 295
Query: 278 TPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTV 336
+P+FLH G+FH+ ++ L G Q+ +SYG IY L G+ GNL S + P V
Sbjct: 296 SPIFLHVGIFHLLMNLGTQLRIGMQLERSYGAHRIVPIYLLCGVMGNLCSSIFLPLSVQV 355
Query: 337 GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLG 395
G +G +F +G L +N +A + + SF + F P VD +AH G
Sbjct: 356 GASGSIFGFLGVLLADLARNWSALASPYLNCC--SLVFTIITSFAVGLFLPGVDNFAHFG 413
Query: 396 AAFTGIIYGFLTCP 409
GI+ G + P
Sbjct: 414 GFVMGILTGLIFLP 427
>gi|170756233|ref|YP_001780053.1| membrane associated peptidase [Clostridium botulinum B1 str. Okra]
gi|429244301|ref|ZP_19207768.1| membrane associated peptidase [Clostridium botulinum CFSAN001628]
gi|169121445|gb|ACA45281.1| putative membrane associated peptidase [Clostridium botulinum B1
str. Okra]
gi|428758682|gb|EKX81087.1| membrane associated peptidase [Clostridium botulinum CFSAN001628]
Length = 341
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N I GE++RL+T MFLH GL H+AL+ +AL GP V +G + +IY + G
Sbjct: 190 GAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGKAKYLIIYFISG 249
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
I + S+L + ++G +G +F I+GA LI + N+ K+ + +++ L F
Sbjct: 250 ILSSYFSYLFSSSVSIGASGAIFGILGATLIIAYTNRKKGGKEFLNNIISVIVVNLILGF 309
Query: 381 IISN 384
I N
Sbjct: 310 SIPN 313
>gi|94968908|ref|YP_590956.1| rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
gi|94550958|gb|ABF40882.1| Rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
Length = 365
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 94/189 (49%), Gaps = 23/189 (12%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLP--LLYGAKINELILVGEWWRLVTPMFLHSGL 286
IL+ I+VAVFL A + +F F P L +GA GEWWR++T MFLH G+
Sbjct: 63 ILIGINVAVFL---AMVLLTRQFVEFDTPTALRWGADYGPATASGEWWRMLTSMFLHGGI 119
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAI 345
H+ ++ +AL G YG F +IY L G G+ + L P+ +VG +G +F +
Sbjct: 120 LHILVNMFALRNLGYTAELFYGRKNFLIIYMLSGFGGSAATLLWRPDSVSVGASGAIFGV 179
Query: 346 IGAW--LIYQFQ----NKDLIAKDVSE---RMFQKAILSTALSFIISNFGPVDTWAHLGA 396
GA ++Y F+ ++ L+ +D+ +F ++ AL I + AH+G
Sbjct: 180 AGALAAMVY-FKKLPVDRALLKRDIGSIGAVIFYNLLIGAALPII-------NNAAHVGG 231
Query: 397 AFTGIIYGF 405
G I GF
Sbjct: 232 LVAGAILGF 240
>gi|429205379|ref|ZP_19196656.1| Integral membrane protein, Rhomboid family [Lactobacillus
saerimneri 30a]
gi|428146451|gb|EKW98690.1| Integral membrane protein, Rhomboid family [Lactobacillus
saerimneri 30a]
Length = 224
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 22/196 (11%)
Query: 215 LQRTEET-SNL----YLISILVSIDVAVFLFEI----ASPIRNSEFGFFSLPLLYGAKIN 265
+ RT+ T SNL + IL+ I++ VF+ + ++ IR + ++GAK
Sbjct: 7 VNRTKMTVSNLVQRPLVTYILIGINLVVFMGTVFAGGSTDIR--------VLYMFGAKFT 58
Query: 266 ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL 325
+L GEWWRL+ MFLH G+ H+ ++ L GP++ YG +IY L G+ GNL
Sbjct: 59 PALLQGEWWRLIAAMFLHDGIGHLFINMITLYFIGPEIEDHYGHARMLVIYLLSGLYGNL 118
Query: 326 TSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN 384
S P VG +G +F + GA+LI Q+ D + + + IL+ L F
Sbjct: 119 LSAFWAPTTLAVGASGALFGLFGAYLILGHQSTDAQIQAQARQFLLFVILNVVLGFS--- 175
Query: 385 FGPVDTWAHLGAAFTG 400
G D H+G G
Sbjct: 176 -GNTDLAGHVGGLIAG 190
>gi|227524649|ref|ZP_03954698.1| S54 family peptidase [Lactobacillus hilgardii ATCC 8290]
gi|227088133|gb|EEI23445.1| S54 family peptidase [Lactobacillus hilgardii ATCC 8290]
Length = 234
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 26/181 (14%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N LI GE+WRL+TP+F+H G H+ ++ L G V +G + F LI+ +
Sbjct: 54 FGAKYNPLIRAGEYWRLLTPIFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLVS 113
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA-- 377
GI+GNL SF +P + G + +F + GA++ ++ + S +AI+S A
Sbjct: 114 GIAGNLASFAFSPSLSAGASTSIFGLFGAFM--------MLGESFSR---NQAIVSMART 162
Query: 378 -LSFIISNFGP------VDTWAHLGAAFTGIIYGFLTCPL--VQLGDASSRNSQEEGITL 428
L FI+ N +D +HLG G++ GFL + V G S GITL
Sbjct: 163 FLLFIVLNIATDIFVSGIDIASHLG----GLVGGFLIAYVSGVTFGKVSLVKRIVAGITL 218
Query: 429 I 429
+
Sbjct: 219 V 219
>gi|414589616|tpg|DAA40187.1| TPA: hypothetical protein ZEAMMB73_944913 [Zea mays]
Length = 341
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
++L++++V ++ ++AS + L++GAKIN LI G++WRL T LH+ L
Sbjct: 143 NVLLALNVLAYVAQVASQGK---------LLMWGAKINSLIDRGQFWRLATSSLLHANLT 193
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+A +C++L + GP V GP + +Y ++G+L S+ + P VG +G +F ++G
Sbjct: 194 HLAFNCFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVGASGAIFGLVG 253
Query: 348 AWLIYQFQNKDLIAKD 363
A+ +Y ++++
Sbjct: 254 AYAVYMWRHRRFFGNS 269
>gi|299470381|emb|CBN78430.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 403
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 114/221 (51%), Gaps = 14/221 (6%)
Query: 191 MGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSE 250
MG+ G+R RN++ R + + A+ TS + +++ ++SI + + + ++
Sbjct: 151 MGR-DGWRGSRNRNVWRRIRKRAAII----TSGVDIVAFVLSIIINGGFQSMWGKVDSNP 205
Query: 251 FGFFSLPLLY--GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYG 308
S+ L GAK LI G+ WRL+TP+ LH G+ H+ ++ + G + + +G
Sbjct: 206 LLGPSIETLMALGAKHLTLIQEGQVWRLLTPILLHGGVLHIFMNLTSQFRMGTFLEERWG 265
Query: 309 PFTFFLIYTLGGISGNLTSFLHTPEPT-VGGTGPVFAIIGAWLIY---QFQNKDLIAKDV 364
+ ++Y +GG+ GNL S + +P+ VG +G ++AI+GAWL + + +D AK
Sbjct: 266 TRNWLIVYWVGGLGGNLLSCVASPDKVGVGASGAIYAIMGAWLSHVLCTWNEEDEFAKGA 325
Query: 365 SERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGF 405
+ +L T + S VD AH+G TGI+ G+
Sbjct: 326 Q---LTQVVLYTMVGMAASLAPIVDWAAHVGGLVTGILVGW 363
>gi|363807582|ref|NP_001242663.1| uncharacterized protein LOC100805315 [Glycine max]
gi|255640088|gb|ACU20335.1| unknown [Glycine max]
Length = 342
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
LL+GAKIN LI G+ WRL T FLH+ + H+ ++C++L + GP V GP F +Y
Sbjct: 157 LLWGAKINSLIDKGQLWRLATSSFLHANIGHLLVNCYSLNSVGPTVESFSGPRRFLAVYF 216
Query: 318 LGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
+ I+ + TS+ P VG +G +F ++G+ ++ ++KDL+ +R Q A
Sbjct: 217 ISAIASSATSYWFCRMPAVGASGAIFGLVGSVAVFVLRHKDLVGG--GKRDLQHIAQVIA 274
Query: 378 LSFIISNFGP-VDTW 391
L+ +I +D W
Sbjct: 275 LNMVIGLLSTGIDNW 289
>gi|345857374|ref|ZP_08809813.1| rhomboid family protein [Desulfosporosinus sp. OT]
gi|344329492|gb|EGW40831.1| rhomboid family protein [Desulfosporosinus sp. OT]
Length = 328
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK+N+LI GE WRL+T +F+H G+ H+A + +AL GP + +G F +IY
Sbjct: 174 FGAKVNDLIQAGEVWRLLTSIFIHIGIIHLAFNLYALRALGPLTEEFFGHPKFLMIYMFS 233
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G+ G++ S+L +P + G +G +F ++GA L Y + L + + ++
Sbjct: 234 GLGGSIASYLFSPALSAGASGAIFGLLGALLYYCIKRPYLWKSGLGMNLV--VVILVNFG 291
Query: 380 FIISNFGPVDTWAH 393
F IS G +D +AH
Sbjct: 292 FGISQPG-IDNYAH 304
>gi|392531337|ref|ZP_10278474.1| membrane endopeptidase [Carnobacterium maltaromaticum ATCC 35586]
gi|414084202|ref|YP_006992910.1| rhomboid family protein [Carnobacterium maltaromaticum LMA28]
gi|412997786|emb|CCO11595.1| rhomboid family protein [Carnobacterium maltaromaticum LMA28]
Length = 236
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 21/168 (12%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
+L+GAK N LI++G+WWRL+TPMFLH G H+A++ + G + K G + F LIY
Sbjct: 47 ILFGAKFNPLIVMGDWWRLITPMFLHIGWLHLAVNSVCVYYIGTHLEKIMGHWRFALIYL 106
Query: 318 LGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
L G++GN+ SF + + G + +F + F ++A+ + + I T
Sbjct: 107 LSGVAGNVASFAFSDSVSAGASTSIFGL--------FATTLMLAETFKGNAYYREIAKTF 158
Query: 378 LSFIISNF---------GPVDTWAHLGAAFTGIIYGFLTCPLVQLGDA 416
I+ NF G VD H G G++ GFL + + +A
Sbjct: 159 GILIVFNFITGFLSIGDGNVDNAGHAG----GLVGGFLIATAISVPNA 202
>gi|223943385|gb|ACN25776.1| unknown [Zea mays]
Length = 266
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 202 NKDGVRSLERDLALQRTE---ETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPL 258
N G R + L R ++ ++L++++V ++ ++AS + L
Sbjct: 39 NGSGGRYISNGKLLSRRPRGIDSKKRLWTNVLLALNVLAYVAQVASQGK---------LL 89
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
++GAKIN LI G++WRL T LH+ L H+A +C++L + GP V GP + +Y
Sbjct: 90 MWGAKINSLIDRGQFWRLATSSLLHANLTHLAFNCFSLNSIGPMVEMLSGPRRYLAVYFS 149
Query: 319 GGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKD 363
++G+L S+ + P VG +G +F ++GA+ +Y ++++
Sbjct: 150 SALAGSLMSYRFSASPAVGASGAIFGLVGAYAVYMWRHRRFFGNS 194
>gi|212712139|ref|ZP_03320267.1| hypothetical protein PROVALCAL_03221 [Providencia alcalifaciens DSM
30120]
gi|212685186|gb|EEB44714.1| hypothetical protein PROVALCAL_03221 [Providencia alcalifaciens DSM
30120]
Length = 680
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 92/215 (42%), Gaps = 37/215 (17%)
Query: 224 LYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
L L L++I V + A+P+ + E+ LL+GA + +L L G+WWR M LH
Sbjct: 33 LTLFIALLNIGVYFYQLNFAAPLESQEYNL----LLFGANVYQLSLTGDWWRYPISMVLH 88
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL------------------ 325
SG H+ L+ ALL G + +++G + IY GI G
Sbjct: 89 SGWLHLGLNTLALLVIGIECERAFGKLRYLAIYLFAGIVGAFVSAAWQYQEALNSAMRRF 148
Query: 326 -----TSFLHTPEP-----TVGGTGPVFAIIGA---WLIYQFQNKDLI--AKDVSERMFQ 370
+S L ++G +G + + A L+ Q N DL A+D +R
Sbjct: 149 DMMSWSSLLQNDNTVYITVSLGASGAIMGLAAASVIALLKQLNNPDLTKNARDTLKRPLY 208
Query: 371 KAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGF 405
I AL+ I VD AH+G A TG I GF
Sbjct: 209 NIIAMIALTLINGIQSGVDNAAHIGGAVTGAIIGF 243
>gi|227513507|ref|ZP_03943556.1| S54 family peptidase [Lactobacillus buchneri ATCC 11577]
gi|227083380|gb|EEI18692.1| S54 family peptidase [Lactobacillus buchneri ATCC 11577]
Length = 234
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 26/181 (14%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N LI GE+WRL+TP+F+H G H+ ++ L G V +G + F LI+ +
Sbjct: 54 FGAKYNPLIRAGEYWRLLTPIFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLVS 113
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA-- 377
GI+GNL SF +P + G + +F + GA++ ++ + S +AI+S A
Sbjct: 114 GIAGNLASFAFSPSLSAGASTSIFGLFGAFM--------MLGESFSR---NQAIVSMART 162
Query: 378 -LSFIISNFGP------VDTWAHLGAAFTGIIYGFLTCPL--VQLGDASSRNSQEEGITL 428
L FI+ N +D HLG G++ GFL + V G S GITL
Sbjct: 163 FLLFIVLNIATDIFVSGIDIAGHLG----GLVGGFLIAYVSGVTFGKVSLVKRIVAGITL 218
Query: 429 I 429
+
Sbjct: 219 V 219
>gi|118442959|ref|YP_877647.1| rhomboid family membrane protein [Clostridium novyi NT]
gi|118133415|gb|ABK60459.1| conserved membrane protein (rhomboid family) [Clostridium novyi NT]
Length = 202
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L GA N L+ GE++RL T MFLH GL H+ + +AL GP V + YG + +IY
Sbjct: 54 LFLGANENTLVSNGEYYRLFTCMFLHGGLIHLLANMYALGAIGPIVERIYGKVKYIIIYL 113
Query: 318 LGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDV 364
+GGI ++ S ++G +G +FA++G LI + KD++ V
Sbjct: 114 VGGIISSIASHFFLRGVSIGASGAIFALLGVMLIITIERKDIVGNGV 160
>gi|451348178|ref|YP_007446809.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
gi|449851936|gb|AGF28928.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
Length = 199
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Query: 253 FFSLPL----LYGAKI---NELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCK 305
FFS+PL ++ + N + GEWWRLVTPMFLH+ H+ + +L F P + +
Sbjct: 31 FFSMPLHSVMMWSDAVTGYNNGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQ 90
Query: 306 SYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKD 363
G F ++Y GI GN+ ++L P VG +G +F + G ++ K+LI +D
Sbjct: 91 MLGKVRFLIVYIASGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRD 150
Query: 364 VSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
S+ + I++ +FI SN ++ AHL G + FL
Sbjct: 151 QSKMIMTLLIIAVLSTFINSN---INIMAHLFGLAGGFLLSFL 190
>gi|56962578|ref|YP_174304.1| hypothetical protein ABC0804 [Bacillus clausii KSM-K16]
gi|56908816|dbj|BAD63343.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 253
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 5/135 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G N IL GE+WRLVTP+FLH GLFH+ + +ALL F P + G F IY + G
Sbjct: 45 GMGWNAAILAGEYWRLVTPIFLHGGLFHLFSNMFALLIFAPALEVMLGKRKFVTIYLISG 104
Query: 321 ISGNL-TSFLHTPEPT-VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
+ N+ T FL +P T VG +G +F + G +L KDL+ + + ++S +
Sbjct: 105 VLANVATLFLESPSYTHVGASGSIFGLFGVFLFMYLYRKDLMDSQSGQTILPIIVISVIM 164
Query: 379 SFIISNFGPVDTWAH 393
+F+ S+ ++ +AH
Sbjct: 165 TFVGSH---INIFAH 176
>gi|116333635|ref|YP_795162.1| membrane-associated serine protease [Lactobacillus brevis ATCC 367]
gi|116098982|gb|ABJ64131.1| Membrane-associated serine protease [Lactobacillus brevis ATCC 367]
Length = 226
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 29/183 (15%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK+N LI G+WWRL+TPMFLH G H+ L+ L G Q+ ++G F +I+ +
Sbjct: 47 FGAKVNPLIQQGQWWRLITPMFLHIGFTHIFLNMVTLYFVGTQLEAAFGHARFLIIFLVA 106
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL----S 375
GI GN+ SF + G + +F + GA+++ + E +Q I+
Sbjct: 107 GIGGNVASFCFLNSLSAGASTAIFGLFGAFMM------------LGESFWQNPIIRQLAR 154
Query: 376 TALSFIISN-----FGP-VDTWAHLGAAFTGIIYGFL---TCPLVQLGDASSRNSQEEGI 426
T L+F++ N F P +D HLG G+I GFL T + Q+G S +
Sbjct: 155 TFLAFVVMNIAFDLFTPGIDLAGHLG----GLIAGFLVAYTVGVPQIGRVSVTKRVVATV 210
Query: 427 TLI 429
LI
Sbjct: 211 VLI 213
>gi|225448034|ref|XP_002273377.1| PREDICTED: rhomboid protease gluP [Vitis vinifera]
gi|298204568|emb|CBI23843.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
+IL++I+V VF+ + A+ + LL+GAKIN LI G++WRL T FLH+ +
Sbjct: 128 NILIAINVLVFIGQAATQGK---------LLLWGAKINSLIDKGQFWRLATSSFLHANIG 178
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+ ++C++L + GP V GP + +Y I+ + S+ P VG +G +F ++G
Sbjct: 179 HLMVNCFSLNSVGPTVENLSGPRRYLAVYFTSAIASSAMSYWLCKGPAVGASGAIFGLVG 238
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFL 406
+ ++ +++ L+ S+ Q L+ +I +D W HLG G++ +L
Sbjct: 239 SVAVFMMRHRGLVGD--SKESLQHIARVIVLNMVIGCLSKGIDNWGHLGGLLGGLVTSWL 296
Query: 407 TCP 409
P
Sbjct: 297 LGP 299
>gi|320102859|ref|YP_004178450.1| rhomboid family protein [Isosphaera pallida ATCC 43644]
gi|319750141|gb|ADV61901.1| Rhomboid family protein [Isosphaera pallida ATCC 43644]
Length = 694
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 13/215 (6%)
Query: 204 DGVRSLERDLAL------QRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLP 257
D +R+ + L L QRT YLI +L + V SP+ +
Sbjct: 267 DRLRAYQNQLHLFACALRQRTPHVIITYLILLLCVMVFGVMTISGVSPLHPDPEDLIAWG 326
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
LYG ++ L E WR +T MFLH G+ H+A++ W L GP + + +G +F IY
Sbjct: 327 CLYGPRV---ALFDESWRALTMMFLHVGILHLAMNAWCLWVVGPLIERMFGHGSFLAIYL 383
Query: 318 LGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS- 375
+ G+ G S P + G +G VF +IGA I V+ R +A+
Sbjct: 384 IAGLGGATASLAWHPINLSAGASGAVFGLIGALGAASLHRPQSIPPLVA-RTLSRAVWGF 442
Query: 376 TALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCP 409
AL+ I P +D AHLG G + G + P
Sbjct: 443 VALNLAIGLSLPMIDNAAHLGGLVCGFLAGAILFP 477
>gi|15894241|ref|NP_347590.1| hypothetical protein CA_C0954 [Clostridium acetobutylicum ATCC 824]
gi|337736171|ref|YP_004635618.1| hypothetical protein SMB_G0971 [Clostridium acetobutylicum DSM
1731]
gi|384457680|ref|YP_005670100.1| hypothetical protein CEA_G0966 [Clostridium acetobutylicum EA 2018]
gi|15023857|gb|AAK78930.1|AE007610_10 Uncharacterized membrane protein [Clostridium acetobutylicum ATCC
824]
gi|325508369|gb|ADZ20005.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
gi|336291944|gb|AEI33078.1| hypothetical protein SMB_G0971 [Clostridium acetobutylicum DSM
1731]
Length = 328
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 81/143 (56%), Gaps = 4/143 (2%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK + LI G+++RL+T MFLH+G+ H+ + ++L + G + YG + IY + G
Sbjct: 177 GAKNSVLIDNGQYYRLITCMFLHAGITHIGANMYSLYSMGYMLENIYGKLRYTAIYFISG 236
Query: 321 ISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
I+ + S++ + E +VG +G +F ++GA +++ F+ + I K M L+ +S
Sbjct: 237 ITASFFSYIFSRESLSVGASGAIFGLLGAAIVFGFKLRKRIGKAFFANMVGVFALNIFIS 296
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
F I N +D +AH G G++
Sbjct: 297 FTIPN---IDIFAHFGGFLGGVV 316
>gi|340356603|ref|ZP_08679245.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
gi|339620530|gb|EGQ25099.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
Length = 202
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 102/194 (52%), Gaps = 17/194 (8%)
Query: 217 RTEETSNLY----LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGE 272
RTE S +++ L+++++ +F+ I N LL+G N LI GE
Sbjct: 4 RTENFSQYVRAYPIVTFLLALNIGIFILTWIPGIGNQL-------LLFGIGDNFLIANGE 56
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHT 331
+WRLVTPMFLH GL H+ + ++L FGP++ K G F IY L G+ G++ T FL +
Sbjct: 57 YWRLVTPMFLHGGLTHLLFNMFSLFIFGPELEKIAGKARFITIYMLAGLFGDVATYFLQS 116
Query: 332 PE-PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
+ +G +G +F + GA+ + K + + + + + ++S ++F+ +N ++
Sbjct: 117 GDYRHLGASGAIFGVFGAFGALVYYTKHVFPQ-LKQVILPIIVISVVMTFVGTN---INV 172
Query: 391 WAHLGAAFTGIIYG 404
AH+ TG + G
Sbjct: 173 TAHIAGLITGFLIG 186
>gi|393199141|ref|YP_006460983.1| membrane protein [Solibacillus silvestris StLB046]
gi|406666244|ref|ZP_11074012.1| Rhomboid protease gluP [Bacillus isronensis B3W22]
gi|327438472|dbj|BAK14837.1| uncharacterized membrane protein [Solibacillus silvestris StLB046]
gi|405385783|gb|EKB45214.1| Rhomboid protease gluP [Bacillus isronensis B3W22]
Length = 207
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLY-GAKINELILVGEWWRLVTPMFLHS 284
++S +++I++ VF+ + F LLY G +N LI GEWWR++T MFLH+
Sbjct: 17 VVSSIIAINLIVFVLTLIPG--------FGEELLYAGMSVNGLIAAGEWWRIITSMFLHA 68
Query: 285 GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL--HTPEPTVGGTGPV 342
G HV + ++L FGP++ K G F IY L GI G ++ +VG +G +
Sbjct: 69 GFMHVLFNMFSLFLFGPELEKIAGKMRFLTIYFLAGIFGVAATYATQDAYYASVGASGAL 128
Query: 343 FAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
+ I GA+ + + L + + + + ++S ++F+ N ++ AHLG TG I
Sbjct: 129 YGIFGAFGALVYYTRHLFPQ-LRQIILPLIVISIIMTFLTPN---INIAAHLGGLVTGFI 184
Query: 403 YG 404
G
Sbjct: 185 LG 186
>gi|281203068|gb|EFA77269.1| mitochondrial substrate carrier family protein [Polysphondylium
pallidum PN500]
Length = 800
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 18/194 (9%)
Query: 229 ILVS-IDVAVFLFEIA-----SPIR-NSEFGFFSLPLL-YGAKINELILVGEWWRLVTPM 280
IL+S I+V + ++EI P + N FG + LL GAK +L GEWWR +P+
Sbjct: 551 ILISLINVCILIWEIILNRGFEPWKTNPWFGPSATVLLNAGAKYTPAMLAGEWWRFFSPI 610
Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPT-VGGT 339
FLH G+FH+ ++ + G Q+ ++YG IY L G+ GNL S + P+ G +
Sbjct: 611 FLHVGIFHLLMNLMTQVRVGMQLERAYGAHRIVPIYLLCGVMGNLCSAIFLPQSVQAGAS 670
Query: 340 GPVFAIIGAWLIYQFQNKDLIAK---DVSERMFQKAILSTALSFIISNFGP-VDTWAHLG 395
G +F +G + F+N L+A + MF + +SF + F P VD +AH G
Sbjct: 671 GAIFGFLGVLVTDLFRNWSLLASPFMNCCSLMF-----TIIISFAVGLFLPGVDNFAHFG 725
Query: 396 AAFTGIIYGFLTCP 409
GI+ + P
Sbjct: 726 GFVMGIMSSLIFLP 739
>gi|154684964|ref|YP_001420125.1| hypothetical protein RBAM_004950 [Bacillus amyloliquefaciens FZB42]
gi|375361124|ref|YP_005129163.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384264056|ref|YP_005419763.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387896968|ref|YP_006327264.1| rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|421732888|ref|ZP_16172004.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452854498|ref|YP_007496181.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|154350815|gb|ABS72894.1| YdcA [Bacillus amyloliquefaciens FZB42]
gi|371567118|emb|CCF03968.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380497409|emb|CCG48447.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387171078|gb|AFJ60539.1| Rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|407073249|gb|EKE46246.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452078758|emb|CCP20509.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 199
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRLVTPMFLH+ H+ + +L F P + + G F ++Y GI GN+ ++L
Sbjct: 56 GEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLA 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G ++ K+LI +D S+ + I++ +FI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLIIAVLSTFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NIMAHLFGLAGGFLLSFL 190
>gi|56963491|ref|YP_175222.1| hypothetical protein ABC1726 [Bacillus clausii KSM-K16]
gi|56909734|dbj|BAD64261.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 523
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N LI+ GEWWRL + MFLH G FH+ ++ AL G V + +G F +IY +
Sbjct: 214 FGAKYNPLIVEGEWWRLFSAMFLHIGFFHLFMNGMALYFLGSAVEQLFGSIRFLVIYFMA 273
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G+ G+ SF T + G +G +F GA L + + L + + + I++ L
Sbjct: 274 GLFGSAVSFAFTDSLSAGASGALFGCFGALLYFGIKQPSLFFRTLGRSVIVLLIINFFLG 333
Query: 380 FII 382
FI+
Sbjct: 334 FIV 336
>gi|403385795|ref|ZP_10927852.1| hypothetical protein KJC30_13905 [Kurthia sp. JC30]
Length = 206
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 101/199 (50%), Gaps = 17/199 (8%)
Query: 215 LQRTEETSN---LY-LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILV 270
R E+ S+ LY ++ L+ I++ V++ + I + F YGA N LI
Sbjct: 2 FNRNEKLSDYIKLYPAVATLILINLIVYVIGLVPRINSYIFN-------YGAAANWLIGA 54
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL- 329
GE+WRLVT +F+H G H+ + + L FGP++ K G F I+ + GI GN+ ++
Sbjct: 55 GEYWRLVTAIFIHGGFLHILSNMFWLYVFGPELEKIAGRARFIFIFLMSGIIGNVATYFV 114
Query: 330 -HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
+VG +G VF ++GA+L + + I + + + I+S ++F+ N V
Sbjct: 115 QDLGYVSVGASGAVFGMLGAYLALVYYTRH-IFPQLRQMILPLVIISVIITFLQPN---V 170
Query: 389 DTWAHLGAAFTGIIYGFLT 407
+ AH+ TG + GF+
Sbjct: 171 NATAHIAGLITGAVIGFIN 189
>gi|308172329|ref|YP_003919034.1| hypothetical protein BAMF_0438 [Bacillus amyloliquefaciens DSM 7]
gi|384158053|ref|YP_005540126.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|384162858|ref|YP_005544237.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|384167079|ref|YP_005548457.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
gi|307605193|emb|CBI41564.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
gi|328552141|gb|AEB22633.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|328910413|gb|AEB62009.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|341826358|gb|AEK87609.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
Length = 199
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Query: 253 FFSLPL----LYGAKI---NELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCK 305
FFSLPL ++ + N + GEWWRLVTPMFLH+ H+ + +L F P + +
Sbjct: 31 FFSLPLHSVMMWSDAVTGYNYGVAEGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQ 90
Query: 306 SYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKD 363
G F ++Y GI GN+ ++L P VG +G +F + G ++ K+LI +D
Sbjct: 91 MLGKVRFLIVYIASGIIGNIGTYLVEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRD 150
Query: 364 VSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
S+ + +++ +FI SN ++ AHL G + FL
Sbjct: 151 QSKMIMTLLVIAVLSTFINSN---INIMAHLFGLAGGFLLSFL 190
>gi|71908004|ref|YP_285591.1| rhomboid-like protein [Dechloromonas aromatica RCB]
gi|71847625|gb|AAZ47121.1| Rhomboid-like protein [Dechloromonas aromatica RCB]
Length = 358
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 91/197 (46%), Gaps = 10/197 (5%)
Query: 216 QRTEETSNLYLISILVSIDVAVF---LFEIASPIRNSEFGFFSLPLLYGAKINELILVGE 272
Q L+L +L++ +V +F L AS ++ L +GA GE
Sbjct: 7 QLRHAMPQLHLTPLLIAANVLIFVAMLLNGASLWHAQN----TIQLAWGANFGPATQDGE 62
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP 332
WWRL + +FLH G+ H+ L+ AL G V + YG F +IY G++GNL S +
Sbjct: 63 WWRLGSALFLHFGILHLLLNMAALWDVGQWVERMYGTLRFAVIYLTAGLTGNLLSLVANA 122
Query: 333 EPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VD 389
V G +G +F I GA L Y + + I + +F AI + + I P +D
Sbjct: 123 GAAVSGGASGAIFGIYGALLSYLWLERSSIHRGEFRWLFWAAIGFSGATIIFGLLVPGID 182
Query: 390 TWAHLGAAFTGIIYGFL 406
AH+G G++ G L
Sbjct: 183 NAAHVGGWIAGVLMGVL 199
>gi|335357178|ref|ZP_08549048.1| rhomboid family integral membrane protein [Lactobacillus animalis
KCTC 3501]
Length = 224
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 18/155 (11%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N LI+ GE WRL TPMF+H GL H+AL+ L G Q+ + +G + F +Y +
Sbjct: 40 WGAKYNPLIIQGELWRLFTPMFIHIGLEHLALNLLTLYFLGVQLEQLFGKWRFLALYLIS 99
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G+ GN+ SF + + G + +F + GA+L ++ + + + + I L
Sbjct: 100 GVGGNILSFALSNNISAGASTSLFGLFGAYL--------MLGESFRQNQYIRMISRQFLV 151
Query: 380 FIISNF------GPVDTWAHLGAAFTGIIYGFLTC 408
I+ N G +D W HLG G++ GFL
Sbjct: 152 LIVLNLGFDLFAGGIDIWGHLG----GLLAGFLAS 182
>gi|408790096|ref|ZP_11201729.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
florum 2F]
gi|408520670|gb|EKK20705.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
florum 2F]
Length = 222
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGA+ N LI G+WWRLVTP+FLH GL H+ L+C L G + K+ G F + +++
Sbjct: 44 YGAQSNPLIQAGQWWRLVTPIFLHIGLQHLLLNCLTLFYVGNLLEKTVGHFRYLVLFLGS 103
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GNL SF + G + +F ++G +L+ + + ++E A+ L+
Sbjct: 104 GIGGNLFSFAAGNVISAGSSTAIFGLLGVFLMLSLVVRGNLL--ITETGITFAVF-VGLN 160
Query: 380 FIISNFGP-VDTWAHLGAAFTGIIYGFLT 407
+ F P +D W HLG TG F+
Sbjct: 161 LLTDFFVPQIDIWGHLGGLLTGFCLAFVV 189
>gi|159482562|ref|XP_001699338.1| rhomboid-like protein [Chlamydomonas reinhardtii]
gi|158272974|gb|EDO98768.1| rhomboid-like protein [Chlamydomonas reinhardtii]
Length = 406
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 13/159 (8%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L++GAK+N LI G+WWRLVTP+FLHS LFH+A++ AL T GPQV G IY
Sbjct: 115 LIWGAKVNALIAAGQWWRLVTPLFLHSNLFHLAINMHALHTLGPQVEVVSGSRRTAAIYM 174
Query: 318 LGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLI--AKDVSERMFQ-KAIL 374
++ P G +F + A ++ +++ DL+ A D R A++
Sbjct: 175 -------ASASCSARCPVWGPAAAMFGLGAALGVFYWRHADLLGPASDSGLRSLGLTAVI 227
Query: 375 STALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ A S + +D W H G G + +L P Q+
Sbjct: 228 NIAYSLVNKR---IDNWGHFGGLVGGALLSYLVGPAFQV 263
>gi|227510498|ref|ZP_03940547.1| S54 family peptidase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227190150|gb|EEI70217.1| S54 family peptidase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 234
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 26/181 (14%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N LI GE+WRL+TP+F+H G H+ ++ L G V +G + F LI+
Sbjct: 54 FGAKYNPLIRAGEYWRLLTPIFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLAS 113
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA-- 377
GI+GNL SF +P + G + +F + GA++ ++ + S +AI+S A
Sbjct: 114 GIAGNLASFAFSPSLSAGASTSIFGLFGAFM--------MLGESFSR---NQAIVSMART 162
Query: 378 -LSFIISNFGP------VDTWAHLGAAFTGIIYGFLTCPL--VQLGDASSRNSQEEGITL 428
L FI+ N +D HLG G++ GFL + V G S GITL
Sbjct: 163 FLLFIVLNIATDIFVSGIDIAGHLG----GLVGGFLIAYVSGVTFGKVSLVKRIVAGITL 218
Query: 429 I 429
+
Sbjct: 219 V 219
>gi|300698196|ref|YP_003748857.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
gi|299074920|emb|CBJ54489.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
Length = 543
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Query: 237 VFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWAL 296
V L + +P++ FSL G + GEWWRL++ FLH+G+ H+A++ + L
Sbjct: 195 VTLLQGGNPLQTPIGVLFSL----GGNAAFEVQHGEWWRLLSATFLHAGVLHLAINMFGL 250
Query: 297 LTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAWLIYQF 354
G V + YGP + LIY G+ G+ SF VG +G VF + GAWL+
Sbjct: 251 YATGVAVERIYGPVAYLLIYLGAGLLGSALSLSFAAQHAIGVGASGAVFGVAGAWLVAIG 310
Query: 355 QNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFL 406
+ + L+ + +S+R+ + L S + P VD AH+G G + +
Sbjct: 311 RYRSLMPQTLSKRLLTQLGLFVLYSLVQGLTKPGVDNAAHIGGLAGGCMLAMI 363
>gi|83646149|ref|YP_434584.1| hypothetical protein HCH_03410 [Hahella chejuensis KCTC 2396]
gi|83634192|gb|ABC30159.1| uncharacterized membrane protein [Hahella chejuensis KCTC 2396]
Length = 294
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 15/187 (8%)
Query: 233 IDVAVFLFEIASPIRNSEFGFFSLP----LLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
I + + L ++ ++N EF + +P L +GA + G+WWRL +FLH G+ H
Sbjct: 21 IILGIILAFVSIWLKNGEF--WHVPSHVMLQWGANFSPATQNGQWWRLDAAIFLHFGIVH 78
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPE-PTVGGTGPVFAII 346
+ L+ WAL G V + YG F +I+ G+ GNL S LH + G +G +F +
Sbjct: 79 LTLNAWALWDGGQWVERMYGQMRFLIIFITSGLIGNLFSLALHVVSVVSAGASGGIFGVY 138
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKA----ILSTALSFIISNFGPVDTWAHLGAAFTGII 402
GA L Y + NK + +F A +L+ L F+I VD AH G TG+I
Sbjct: 139 GALLSYLWLNKSRVPLTEFRWLFFGAAIFSLLTIFLGFLIDG---VDNAAHGGGFITGLI 195
Query: 403 YGFLTCP 409
G L P
Sbjct: 196 LGALLIP 202
>gi|373859824|ref|ZP_09602547.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372450467|gb|EHP23955.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 244
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 9/152 (5%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
A +N I GE+WR +TP+FLHSG H+ + ++L+ FGP + K G F L+Y GG
Sbjct: 47 AGVNLYIAEGEYWRFITPIFLHSGFAHMLFNSFSLVLFGPALEKMLGKTKFTLLYLAGGT 106
Query: 322 SGNLTSFLHTP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
N+ ++L P VG +G +FA+ G +L K L+++ S+ + ++ ++
Sbjct: 107 LANVATYLVNPLSYSHVGSSGAIFALFGFYLAIILFKKHLLSRQNSQIVLTITVIGLVMT 166
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
FI N V+ AH+ G+I GFL +V
Sbjct: 167 FIQPN---VNVAAHV----FGLISGFLIGSIV 191
>gi|30689150|ref|NP_173900.2| RHOMBOID-like protein 10 [Arabidopsis thaliana]
gi|332192481|gb|AEE30602.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
Length = 343
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 96/192 (50%), Gaps = 23/192 (11%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
++L++I+V +++ +IAS + L +GAKIN LI G+ WRL T LH+
Sbjct: 131 NVLLAINVIMYIAQIASDGK---------VLTWGAKINSLIERGQLWRLATASVLHANPM 181
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGIS-------GNLTSFLHTPEPTVGGTG 340
H+ ++C++L + GP GP F +Y ++ G+ S+ P+VG +G
Sbjct: 182 HLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSYWFNKAPSVGASG 241
Query: 341 PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA---ILSTALSFIISNFGPVDTWAHLGAA 397
+F ++G+ ++ ++K ++ + +E + Q A L+ A+ + +D W H+G
Sbjct: 242 AIFGLVGSVAVFVIRHKQMV-RGGNEDLMQIAQIIALNMAMGLMSRR---IDNWGHIGGL 297
Query: 398 FTGIIYGFLTCP 409
G +L P
Sbjct: 298 LGGTAMTWLLGP 309
>gi|347755936|ref|YP_004863500.1| hypothetical protein [Candidatus Chloracidobacterium thermophilum
B]
gi|347588454|gb|AEP12984.1| putative membrane protein [Candidatus Chloracidobacterium
thermophilum B]
Length = 424
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 7/176 (3%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
+L+ I+VA+FL + + +GA +LI GE WRLV PMFLH G+ H
Sbjct: 63 VLIGINVAMFLLTAFAGGSTDP----DVLTAFGACNRKLIDQGEVWRLVVPMFLHIGMIH 118
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLHTPEPTVGGTGPVFAII 346
+ + +AL GPQ+ YG F ++Y L GI G + S F H G +G +F +
Sbjct: 119 LLANMYALWVLGPQLESLYGSARFTILYLLSGIGGFVASYFFAHPESIGAGASGALFGMF 178
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGI 401
GA L++ ++ + I V M + L+ ++ +I+ P + H+G TGI
Sbjct: 179 GALLVFVYKYRAEIPPMVRATMQRGVWLTLIINLVITFSIPFISRSGHVGGLLTGI 234
>gi|406027090|ref|YP_006725922.1| membrane-associated serine protease [Lactobacillus buchneri CD034]
gi|405125579|gb|AFS00340.1| membrane-associated serine protease [Lactobacillus buchneri CD034]
Length = 220
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 97/191 (50%), Gaps = 22/191 (11%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N LI GE+WRL+TPMF+H G H+ ++ L G V + +G + F +I+ +
Sbjct: 40 FGAKYNPLIRAGEYWRLITPMFIHIGFTHILMNGITLYFIGQYVEQLFGHWRFAVIFFVS 99
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GNL SF T + G + +F + GA++ ++ + S+ ++ T L
Sbjct: 100 GIMGNLGSFAFTDSLSAGASTAIFGLFGAFM--------MLGESFSKNPAIVSMAKTFLL 151
Query: 380 FIISNFGP------VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYA 433
FI+ N G +D HLG G++ GFL + +G S+ SQ + I I
Sbjct: 152 FIVLNIGTDIFVSGIDIAGHLG----GLVGGFLVAYVTGVG--FSKTSQTKRI--ISAIM 203
Query: 434 NPCKSLIVFTI 444
+L++FTI
Sbjct: 204 LVVIALVLFTI 214
>gi|385263597|ref|ZP_10041684.1| Rhomboid family protein [Bacillus sp. 5B6]
gi|385148093|gb|EIF12030.1| Rhomboid family protein [Bacillus sp. 5B6]
Length = 199
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRLVTPMFLH+ H+ + +L F P + + G F ++Y G+ GN+ ++L
Sbjct: 56 GEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIASGLIGNIGTYLA 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G ++ K+LI +D S+ + I++ +FI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLIIAVLSTFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NIMAHLFGLAGGFLLSFL 190
>gi|91776194|ref|YP_545950.1| rhomboid-like protein [Methylobacillus flagellatus KT]
gi|91710181|gb|ABE50109.1| Rhomboid-like protein [Methylobacillus flagellatus KT]
Length = 356
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 255 SLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFL 314
L L +GA GEWWRL T +FLH G H+AL+ A G V + YG + + +
Sbjct: 54 QLQLAWGANFGPATQDGEWWRLFTALFLHFGAVHLALNMIAFWDGGQLVERMYGHWRYLV 113
Query: 315 IYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA 372
IY + G+ GNL S + V G +G +F I GA +++ +Q + L+ + +F A
Sbjct: 114 IYLVSGLVGNLLSLVWQGNQAVSGGASGAIFGIYGALIVFLWQERALLDRREFRWLFGGA 173
Query: 373 IL----STALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
+ + AL F+I +D AH+G G++ G L
Sbjct: 174 CVFATATIALGFMIP---AIDNAAHIGGFVAGMLAGLL 208
>gi|428183558|gb|EKX52415.1| hypothetical protein GUITHDRAFT_161181 [Guillardia theta CCMP2712]
Length = 352
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLP----LLYGAKINELILVGEWWRLVTPMF 281
I I+ + V VF+ E+A + NS +P + G K+ LI GE+WRL+TP+
Sbjct: 121 FIGIITMLQVLVFVIEVA--LSNSWSAILDVPSPVLAVMGGKVAPLIAAGEYWRLITPIM 178
Query: 282 LHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTG 340
LH+GLFH+ ++ + FG Q+ + +G +IY GI GN+ S L P+ ++G +G
Sbjct: 179 LHAGLFHLLINAFTQCMFGIQLEREWGAAQIAIIYVCAGIYGNILSVLFAPQALSIGCSG 238
Query: 341 PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI-LSTALSFIISNFGPVDTWAHLGAAFT 399
+F + GA + Y + D+ ++M ++ LS F+ S VD AH+G
Sbjct: 239 AIFGLFGAQVAYITGMWRQLG-DLQKKMLILSLSLSFIFIFVFSFSVGVDMSAHMGGFVA 297
Query: 400 GIIYGF 405
G++ G
Sbjct: 298 GMVMGL 303
>gi|17549744|ref|NP_523084.1| hypothetical protein RS04802 [Ralstonia solanacearum GMI1000]
gi|17431999|emb|CAD18676.1| probable membrane transmembrane protein [Ralstonia solanacearum
GMI1000]
Length = 569
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 15/206 (7%)
Query: 210 ERDLALQRTEETSNLYLISILVSIDVAVFLFEI---ASPIRNSEFGFFSLPLLYGAKINE 266
ER Q +L L++++V +L + +P++ F+L G
Sbjct: 191 ERQFEEQLAALAPRPHLTHALIALNVLAWLATLVLGGNPLQTPTDVLFNL----GGNAAF 246
Query: 267 LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL- 325
+ GEWWRL++ FLH+G+ H+A++ L G V + YGP + LIY G+ G+
Sbjct: 247 EVQQGEWWRLLSATFLHAGVLHLAVNMIGLYAAGVTVERIYGPVAYLLIYLGAGLLGSAL 306
Query: 326 -TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN 384
SF VG +G VF + GAWL+ Q + + + +S+R+ + L S +
Sbjct: 307 SLSFAAQHAIGVGASGAVFGVAGAWLVAIRQYRGRMPETLSKRLLTQIGLFVLYSLVQGL 366
Query: 385 FGP-VDTWAHLGAAFTGIIYG-FLTC 408
P VD AH+G G+I G L C
Sbjct: 367 TKPGVDNAAHVG----GLIGGCLLAC 388
>gi|415886173|ref|ZP_11547996.1| serine peptidase [Bacillus methanolicus MGA3]
gi|387588826|gb|EIJ81147.1| serine peptidase [Bacillus methanolicus MGA3]
Length = 199
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 285
++SI+V + V ++ I PI + F L A +N I GE+WRLVTP+ LHSG
Sbjct: 17 IVSIIVGVHVFLYFLTIL-PIFPNRLLFEKL-----AGVNLYIAAGEYWRLVTPIVLHSG 70
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP--TVGGTGPVF 343
H+ + ++L+ FGP + + G F ++Y GI+ N+ +FL P VG +G +F
Sbjct: 71 FSHMLFNSFSLVLFGPALERIIGKKKFMILYFSSGIAANIATFLIKPLTFIHVGSSGAIF 130
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
+ G ++ K L++K ++ + + +S ++F+ N ++ AH+ TGI+
Sbjct: 131 GLFGFYIAIILFKKHLLSKQNTQIILTISAISLIMTFVQDN---INVTAHIFGLITGIVI 187
Query: 404 G--FLTC 408
G FLT
Sbjct: 188 GAVFLTT 194
>gi|149919219|ref|ZP_01907702.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
gi|149819933|gb|EDM79355.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
Length = 383
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 125/267 (46%), Gaps = 19/267 (7%)
Query: 199 ELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPL 258
E +++ R+ A Q+ Y +L+ ++VAV+L + + E L +
Sbjct: 25 EAADREARRAEADSRARQQQSSRPEPYASYVLLGLNVAVWLLMVGMGVDAFEPSSEEL-V 83
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
+GA G+WWRL+T FLH GL H+ + + L G + + + +IY
Sbjct: 84 DWGANFGPKTASGQWWRLLTATFLHGGLIHLGFNIYFLWVIGRITEQIFRAPAYLVIYFG 143
Query: 319 GGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI---- 373
G+ + S P P+VG +G + + GA+L + + ++++ + + + + A+
Sbjct: 144 SGLCASAASLAWNPIAPSVGASGALLGVFGAFLGFTLRRREVLPPEFVQSVRRNAMVLIG 203
Query: 374 LSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYA 433
L+ A++F +SN +D AH+G G+ G+L L + S++E + L R+
Sbjct: 204 LNVAVAFFMSN---IDNAAHVGGLVAGLGIGYLITTLAE----RPVQSRQESLALQRRL- 255
Query: 434 NPCKSLIVFT-IFVIILGSFIFVFEPP 459
SL+V + V++ G+ + + P
Sbjct: 256 ----SLMVGAGVAVLVAGACVLLRTDP 278
>gi|372325402|ref|ZP_09519991.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
gi|366984210|gb|EHN59609.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
Length = 234
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 11/149 (7%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
+L G ++ L + GEW+R TP+FLH+ L H+ + L+ GP V K +G F LIY
Sbjct: 48 VLLGGGVDSLFMSGEWYRAFTPIFLHASLMHIFSNMLTLVIVGPFVEKLFGKGKFLLIYL 107
Query: 318 LGGISGNLTSFLHTPEP---TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL 374
+ G+ GNL +F+ P P +VG +G +F + G ++ + N++ V R Q I
Sbjct: 108 ITGVWGNLLTFIFDPNPNVVSVGASGALFGLFGVMIVSGWYNRN---NFVFRR--QLIIF 162
Query: 375 STALSF-IISNFG--PVDTWAHLGAAFTG 400
+ F +I N VD WAH+G +G
Sbjct: 163 AALAVFNLIGNLNDPSVDIWAHIGGLISG 191
>gi|366053016|ref|ZP_09450738.1| membrane-associated serine protease [Lactobacillus suebicus KCTC
3549]
Length = 223
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 28/222 (12%)
Query: 230 LVSIDVAVF-LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
+V I V VF L +A N++ + + +GAK+ LI G+WWRL+TP+FLH GL H
Sbjct: 16 IVLIQVIVFILMTVAGGSTNTQ-----ILIEFGAKVGTLIQEGQWWRLITPVFLHIGLMH 70
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAIIG 347
+ ++ + G Q+ +G F IY + ++GNL SF+ P + G + +F + G
Sbjct: 71 LVVNSVTVYYIGTQIENMFGHARFLSIYFVSALTGNLASFVFLPNSLSAGASTAIFGLFG 130
Query: 348 AWLIY--QFQNKDLIAKDVSERMFQKAILS-TALSFIISNFGP-VDTWAHLGAAFTGIIY 403
A+L+ F + I R+ + L+ A++ + F P +D + HLG G++
Sbjct: 131 AFLMLGESFHHNPYI------RLLSRQFLTFVAINLVFDLFMPGIDIYGHLG----GLVG 180
Query: 404 GFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIF 445
GFL +V Q I LI+++ + L++ +F
Sbjct: 181 GFLMGYVV-------GTPQIGKINLIKRFLSGIILLVIVVMF 215
>gi|11761473|gb|AAG40087.1|AC079374_1 unknown protein [Arabidopsis thaliana]
Length = 369
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 96/192 (50%), Gaps = 23/192 (11%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
++L++I+V +++ +IAS + L +GAKIN LI G+ WRL T LH+
Sbjct: 157 NVLLAINVIMYIAQIASDGK---------VLTWGAKINSLIERGQLWRLATASVLHANPM 207
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGIS-------GNLTSFLHTPEPTVGGTG 340
H+ ++C++L + GP GP F +Y ++ G+ S+ P+VG +G
Sbjct: 208 HLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSYWFNKAPSVGASG 267
Query: 341 PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA---ILSTALSFIISNFGPVDTWAHLGAA 397
+F ++G+ ++ ++K ++ + +E + Q A L+ A+ + +D W H+G
Sbjct: 268 AIFGLVGSVAVFVIRHKQMV-RGGNEDLMQIAQIIALNMAMGLMSRR---IDNWGHIGGL 323
Query: 398 FTGIIYGFLTCP 409
G +L P
Sbjct: 324 LGGTAMTWLLGP 335
>gi|299538296|ref|ZP_07051581.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|424736343|ref|ZP_18164803.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
gi|298726498|gb|EFI67088.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|422949946|gb|EKU44319.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
Length = 207
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 21/185 (11%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 285
++S L++I++ +++ + I +L YG + N LI GEWWR+ + +FLH+G
Sbjct: 17 VVSTLIAINLTLYVLSLIPSIG-------TLLWNYGIQANFLIQSGEWWRVFSAIFLHAG 69
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH--TPEPTVGGTGPVF 343
HV + ++L FGP++ K G F IY + GI GN+ +++ + ++G +G +F
Sbjct: 70 FMHVFFNMFSLYLFGPELEKIAGKARFITIYLVSGIVGNMATYIFYDSSYASLGASGAIF 129
Query: 344 AIIGAW--LIYQFQNKDLIAKDVSERMFQKAILS-TALSFIISNFGP-VDTWAHLGAAFT 399
I GA+ L+Y + + M +K IL +S I++ P V+ +AHLG T
Sbjct: 130 GIFGAFGALVYYTRR--------TMPMLRKLILPIIVISVIMTFLQPNVNVFAHLGGLVT 181
Query: 400 GIIYG 404
G I G
Sbjct: 182 GFILG 186
>gi|331701529|ref|YP_004398488.1| peptidase S54, rhomboid domain-containing protein [Lactobacillus
buchneri NRRL B-30929]
gi|329128872|gb|AEB73425.1| Peptidase S54, rhomboid domain protein [Lactobacillus buchneri NRRL
B-30929]
Length = 220
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 22/191 (11%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N LI GE+WRL+TPMF+H G H+ ++ L G V + +G + F +I+ +
Sbjct: 40 FGAKYNPLIRAGEYWRLITPMFIHIGFTHILMNGITLYFIGQYVEQLFGHWRFAVIFFVS 99
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GNL SF T + G + +F + GA++ ++ + S+ ++ T L
Sbjct: 100 GIMGNLGSFAFTDSLSAGASTAIFGLFGAFM--------MLGESFSKNPAIVSMAKTFLL 151
Query: 380 FIISNFGP------VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYA 433
FII N G +D HLG G++ GFL + +G S+ SQ + I I
Sbjct: 152 FIILNIGTDIFVSGIDIAGHLG----GLVGGFLVAYVTGVG--FSKTSQTKRI--ISAIM 203
Query: 434 NPCKSLIVFTI 444
+ ++FTI
Sbjct: 204 LVVIAFVLFTI 214
>gi|297849660|ref|XP_002892711.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297338553|gb|EFH68970.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 307
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 20/189 (10%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
E WRL+T M+LH+G+FH+ + + ++ FG ++ + +G LIY + G G++ S L
Sbjct: 96 EKWRLITAMWLHAGIFHLFTNMFNVIFFGIRLEQQFGFLRIGLIYLISGFGGSILSALFL 155
Query: 332 PEP-TVGGTGPVFAIIGA--------WLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 382
+VG +G + +IGA W IY+ + L + + AL I
Sbjct: 156 QNSISVGASGALLGLIGAMLSELVINWTIYESKLCALFS----------ILFIIALDLAI 205
Query: 383 SNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVF 442
VD +AH+G TG GF+ QLG SRNS + G +Y NPC+ ++ F
Sbjct: 206 GLLPWVDNFAHIGGLLTGFFLGFILLIQPQLGWEESRNSSQYGARAKSKY-NPCQYVLFF 264
Query: 443 TIFVIILGS 451
V+++ S
Sbjct: 265 IAAVLVVAS 273
>gi|399516625|ref|ZP_10758222.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
gi|398648534|emb|CCJ66249.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
Length = 227
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 96/179 (53%), Gaps = 8/179 (4%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILV-GEWWRLVTPMFLHSGL 286
+IL+++ V VFL E+ ++ +F + + GAK I ++WRL+TP+FLH+G
Sbjct: 15 TILLTVTVVVFLIELVVSGGTTDNSYFLVQV--GAKWGPYIKGDSQYWRLITPIFLHAGF 72
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAI 345
H+A + L GP ++G F +Y GISGN+ S+L +P +VG + +F +
Sbjct: 73 MHIATNMLTLWFIGPIAEDAFGSRKFLGLYFFSGISGNIFSYLFSPNTISVGASTALFGL 132
Query: 346 IGAWLIYQFQNK-DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
G+ +I+ +Q + D + + M +L+ SF +N +D W HLG G+++
Sbjct: 133 FGSLMIFAYQYRHDPNVRALGSMMGLFVLLTLLSSFSATN---IDLWGHLGGFIGGVMF 188
>gi|398309567|ref|ZP_10513041.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus
mojavensis RO-H-1]
Length = 199
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRLVTP+FLH+G H+ + ++ F P + + G F L+Y G+ GN+ ++
Sbjct: 56 GEWWRLVTPIFLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGMIGNIGTYFT 115
Query: 331 TPEPT--VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L K+LI +D S+ + + +SFI SN +
Sbjct: 116 EPLDYLHVGASGAIFGLFGVYLFMVLFRKELIGQDNSKMILTLLAFAVLMSFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NMMAHLFGLCGGFLLSFL 190
>gi|294501246|ref|YP_003564946.1| membrane endopeptidase [Bacillus megaterium QM B1551]
gi|294351183|gb|ADE71512.1| membrane endopeptidase [Bacillus megaterium QM B1551]
Length = 506
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 15/187 (8%)
Query: 229 ILVSIDVAVFLF-EIASPIRNSEFGFFSLPLL-YGAKINELILVGEWWRLVTPMFLHSGL 286
I +++ + +FLF E S +N+ L L+ YGAK N LI+ GEWWR TP+ LH GL
Sbjct: 183 IFLALQILMFLFLEWKSSTQNT------LTLIQYGAKYNPLIMEGEWWRFFTPVILHIGL 236
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAII 346
H+ ++ AL G V + YG F IY G +G+L SF+ + G +G +F
Sbjct: 237 LHLLMNSVALYYLGTLVERIYGSGRFVFIYIFAGFAGSLGSFIWNTSISAGASGAIFGCF 296
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
GA L N + + +++ F+ N VD H+G G++ GFL
Sbjct: 297 GALLFIARTNPRFFFRTMGSSFIVIIVINLIFGFVAPN---VDNAGHIG----GLVGGFL 349
Query: 407 TCPLVQL 413
+V L
Sbjct: 350 AASIVSL 356
>gi|433444473|ref|ZP_20409345.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus TNO-09.006]
gi|432001501|gb|ELK22376.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus TNO-09.006]
Length = 517
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N LIL GEWWR TP+ LH G H+ ++ +AL G V K YG F F IY
Sbjct: 220 YGAKFNPLILQGEWWRFFTPIVLHIGFLHLFMNTFALYYLGSLVEKLYGSFRFLFIYLFA 279
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
G +G+L SFL + + G +G +F GA L + + + + + ++ A
Sbjct: 280 GFAGSLASFLFSSSVSAGASGAIFGCFGALLYFGKAKPHIFFRTIGMNVITVIGINLAFG 339
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
++ N +D H+G G+I GFL +V R Q
Sbjct: 340 LVVPN---IDNAGHIG----GLIGGFLAANIVHFPKERVRFGQ 375
>gi|365902867|ref|ZP_09440690.1| membrane-associated serine protease [Lactobacillus malefermentans
KCTC 3548]
Length = 226
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 16/182 (8%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK++ LI G+WWRL TP+FLH G H+ L+ L G Q+ + +G + +F+I+ +
Sbjct: 44 FGAKVSSLIQAGQWWRLFTPVFLHIGFEHILLNGITLYFLGLQIERIFGHWRYFIIFVVT 103
Query: 320 GISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
I GNL SF+ +P + G + +F + GA+L ++ + E + + + T
Sbjct: 104 AIGGNLASFVFSPNSLSAGASTAIFGLFGAFL--------MLGESFWENPYIRQMTKTFA 155
Query: 379 SFIISNFG------PVDTWAHLGAAFTGIIYGFLTC-PLVQLGDASSRNSQEEGITLIRQ 431
FI+ N G +D H+G G + G++ P LG S + LI
Sbjct: 156 LFIVLNLGFDLLSPGIDLSGHIGGLVAGFLIGYVVALPKNILGKVSVAKRVIAVVVLIVG 215
Query: 432 YA 433
+
Sbjct: 216 FV 217
>gi|387927974|ref|ZP_10130652.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
gi|387587560|gb|EIJ79882.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
Length = 201
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 227 ISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGL 286
+SI+V ++V ++ F I PI + F L A IN I GE+WRLVTP+ LHSG
Sbjct: 18 VSIIVGLNVLLYFFTIL-PIFPNRLLFEKL-----AGINLYIAEGEYWRLVTPILLHSGF 71
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP--TVGGTGPVFA 344
H+ + ++L+ FGP + + G F ++Y GI+ N+ +F P VG +G +F
Sbjct: 72 PHMLFNSFSLILFGPALERIIGKNKFVILYFSTGIAANIATFFVKPLTFIHVGSSGAIFG 131
Query: 345 IIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYG 404
+ G ++ K L++K ++ + +S ++F+ N ++ AH+ GII G
Sbjct: 132 LFGFYIAMTLFKKHLLSKQNTQIILTITAISLIMTFVQPN---INVIAHIFGLIAGIIIG 188
>gi|336395216|ref|ZP_08576615.1| membrane-associated serine protease [Lactobacillus farciminis KCTC
3681]
Length = 225
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 16/186 (8%)
Query: 215 LQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWW 274
+Q +N Y+ L++I VAVFL E S + +GAK N L+ G+WW
Sbjct: 1 MQIINRRANAYVTWSLLAITVAVFLLETISGGSQNLLTLIH----FGAKTNYLVQEGQWW 56
Query: 275 RLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP 334
RL+TP+FLH G+FH+ ++ + LL G + G + F ++Y L GI GNL SF
Sbjct: 57 RLITPIFLHIGIFHILMNGFTLLYVGQILEPMIGHWRFLIVYMLSGIMGNLASFAFGANN 116
Query: 335 TV--GGTGPVFAIIGAWL----IYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
+ G + +F + A+L IY+ +N+ L ++ + +++ + +S +
Sbjct: 117 AISAGASTSLFGMFAAFLSLAIIYR-ENRFL--TELGKSFLGLIVINLLMDLTMSG---I 170
Query: 389 DTWAHL 394
D W H+
Sbjct: 171 DIWGHI 176
>gi|82703577|ref|YP_413143.1| rhomboid-like protein [Nitrosospira multiformis ATCC 25196]
gi|82411642|gb|ABB75751.1| Rhomboid-like protein [Nitrosospira multiformis ATCC 25196]
Length = 371
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 14/186 (7%)
Query: 229 ILVSIDVAVFLFEIASP--IRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGL 286
+LVS ++ +F+ +AS + +S G + L +GA GEWWRL T MFLH GL
Sbjct: 20 LLVSTNLLIFVAMLASGAGLWHSSNG---VQLAWGANFGPATQDGEWWRLGTAMFLHFGL 76
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL-HTPEPTVGG-TGPVFA 344
H+ L+ WAL G V + YG F +Y G++GNL S + H GG +G +F
Sbjct: 77 VHLTLNLWALWDAGQLVERMYGHARFTALYFASGLAGNLLSLVAHKGLAISGGASGAIFG 136
Query: 345 IIGAWLIYQFQNKDLIAKDVSERMFQK----AILSTALSFIISNFGPVDTWAHLGAAFTG 400
+ GA L++ ++ + + F AI+S L I+ +D AH+G TG
Sbjct: 137 LYGALLVFLWRERGRLHPHEFRWFFWGATAFAIVSLGLGLAITG---IDNAAHIGGFVTG 193
Query: 401 IIYGFL 406
++ G +
Sbjct: 194 LLGGIV 199
>gi|14520881|ref|NP_126356.1| hypothetical protein PAB1920 [Pyrococcus abyssi GE5]
gi|5458098|emb|CAB49587.1| Membrane protein, rhomboid protein homolog [Pyrococcus abyssi GE5]
gi|380741425|tpe|CCE70059.1| TPA: hypothetical protein PAB1920 [Pyrococcus abyssi GE5]
Length = 212
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 22/181 (12%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I AVF++E+ F +L A+INEL+ G+WWRL+T +FLH G H
Sbjct: 31 LMIIITAVFIYEVIVG--------FDRAILELAQINELVFRGQWWRLLTAIFLHMGFVHF 82
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTV---GGTGPVFAII 346
AL+ + L G + G F +++ ++GN+ S L T +P + G +G +F I+
Sbjct: 83 ALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLS-LFTLDPRIASGGASGGLFGIV 141
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGF 405
GA L + V R QKA+++ F+I++ P V+ +AH G TG++ G+
Sbjct: 142 GA---------LLSIEGVLRRNIQKALINALALFLINSIFPGVNIFAHFGGLVTGLVLGY 192
Query: 406 L 406
Sbjct: 193 F 193
>gi|394994552|ref|ZP_10387265.1| YdcA, partial [Bacillus sp. 916]
gi|393804581|gb|EJD65987.1| YdcA, partial [Bacillus sp. 916]
Length = 184
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRLVTPMFLH+ H+ + +L F P + + G F ++Y GI GN+ ++L
Sbjct: 56 GEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLVVYIASGIIGNIGTYLA 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G ++ K+LI +D S+ + I++ +FI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLIIAVLSTFINSN---I 172
Query: 389 DTWAHL 394
+ AHL
Sbjct: 173 NIMAHL 178
>gi|384044908|ref|YP_005492925.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
megaterium WSH-002]
gi|345442599|gb|AEN87616.1| Serine protease of Rhomboid family, contains TPR repeats [Bacillus
megaterium WSH-002]
Length = 481
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 15/187 (8%)
Query: 229 ILVSIDVAVFLF-EIASPIRNSEFGFFSLPLL-YGAKINELILVGEWWRLVTPMFLHSGL 286
I +++ + +FLF E S +N+ L L+ YGAK N LI+ GEWWR TP+ LH GL
Sbjct: 158 IFLALQILMFLFLEWKSSTQNT------LTLIQYGAKYNPLIMEGEWWRFFTPIILHIGL 211
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAII 346
H+ ++ AL G V + YG F IY G +G+L SF+ + G +G +F
Sbjct: 212 LHLLMNSVALYYLGTLVERIYGSGRFVFIYIFAGFAGSLGSFIWNTSISAGASGAIFGCF 271
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
GA L N + + +++ F+ N VD H+G G++ GFL
Sbjct: 272 GALLFIARTNPRFFFRTMGSSFIVIIVINLIFGFVAPN---VDNAGHIG----GLVGGFL 324
Query: 407 TCPLVQL 413
+V L
Sbjct: 325 AASIVSL 331
>gi|89099491|ref|ZP_01172367.1| hypothetical protein B14911_19975 [Bacillus sp. NRRL B-14911]
gi|89085877|gb|EAR65002.1| hypothetical protein B14911_19975 [Bacillus sp. NRRL B-14911]
Length = 196
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 81/151 (53%), Gaps = 9/151 (5%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
A +N I GE WRL TP+F+HSG HV + ++L+ FGP + + G F IY + GI
Sbjct: 47 AGVNLFIREGEVWRLATPIFMHSGFTHVLFNSFSLVLFGPALERIAGKAKFAGIYLITGI 106
Query: 322 SGNLTSFLHTP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
S N+ + L P VG +G +F + G + + KDL++++ S+ + A++ ++
Sbjct: 107 SANVATLLLEPLTYTHVGSSGAIFGLFGFFAAVAYFRKDLMSRENSQIIITIAVIGLIMT 166
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPL 410
FI N ++ AH+ G I GFL L
Sbjct: 167 FIQPN---INISAHI----FGFISGFLIGAL 190
>gi|403238266|ref|ZP_10916852.1| S54 family peptidase [Bacillus sp. 10403023]
Length = 239
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%)
Query: 265 NELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN 324
N LI GE+WRLVTP+F+HSG H+ + ++L+ FGP + G F ++Y L G++ N
Sbjct: 50 NFLISEGEYWRLVTPIFVHSGFGHMLFNSFSLVLFGPALESMLGKVKFTVVYLLTGVAAN 109
Query: 325 LTSFLHTPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 382
L ++ P VG +G +F + G +L KDLI ++ + ++ ++FI
Sbjct: 110 LATYYIEPLEFAHVGSSGAIFGLFGIYLYMVVFRKDLINHMNAQLITTILVIGLVMTFIN 169
Query: 383 SNFGPVDTWAHLGAAFTGIIYGFLTCP-------LVQLGDASSR 419
SN V+ AHL G I L P ++ GD+S R
Sbjct: 170 SN---VNIVAHLFGFLAGAIIAPLVLPKTSGQPQIMLAGDSSYR 210
>gi|449015504|dbj|BAM78906.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 364
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 14/202 (6%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLL-YGAKINELILVGEWWRLVTPMFLHS 284
L + ++ I++ +L E+ + G S LL GAKIN I G+ WRL TP+FLH
Sbjct: 109 LTTGIIGINILTYLAELYFEVEGKLSGANSNILLALGAKINSAIAAGQLWRLFTPIFLHG 168
Query: 285 GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFA 344
GL H+ + +AL + +YGP F +IY G GNL S+ TP +VG + +F
Sbjct: 169 GLLHLLSNTYALYAISYECEMAYGPLAFAVIYLASGAWGNLLSYWFTPYLSVGASSSIFG 228
Query: 345 IIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG-------PVDTWAHLGAA 397
+ A+++Y N ++ + + ++ ++ ++ NF +D AHLG A
Sbjct: 229 LFSAYIVYLVNNYAILGRQARRQ------ITVLVALVVFNFAFGSTPGDAIDNSAHLGGA 282
Query: 398 FTGIIYGFLTCPLVQLGDASSR 419
G + + P + L DA+ +
Sbjct: 283 IAGALLSEIVVPELILRDANGQ 304
>gi|160874113|ref|YP_001553429.1| rhomboid family protein [Shewanella baltica OS195]
gi|378707356|ref|YP_005272250.1| rhomboid family protein [Shewanella baltica OS678]
gi|418024255|ref|ZP_12663238.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
gi|160859635|gb|ABX48169.1| Rhomboid family protein [Shewanella baltica OS195]
gi|315266345|gb|ADT93198.1| Rhomboid family protein [Shewanella baltica OS678]
gi|353536215|gb|EHC05774.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
Length = 541
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 5/172 (2%)
Query: 255 SLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFL 314
S L +GA +L GEWWRL+T F+H GL H+AL+ + L G + G + FL
Sbjct: 357 SFLLEWGANFRPKVLAGEWWRLITSTFIHGGLAHLALNLYGLFFVGSFLEPVLGKWRLFL 416
Query: 315 IYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y + GI ++ S + +VG +G + ++G +I+ + K + +D++ +
Sbjct: 417 AYLITGILASIASICWYDATVSVGASGAIMGLLGILVIWAW--KKIFPEDINWILSINLA 474
Query: 374 LSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL--GDASSRNSQE 423
+S + G VD AH+G +G++ G+L+ Q GD ++ +++
Sbjct: 475 FFVTISLVAGLLGGVDNAAHVGGLLSGLVVGYLSLRYAQRAQGDRGAQRARK 526
>gi|295706593|ref|YP_003599668.1| membrane endopeptidase [Bacillus megaterium DSM 319]
gi|294804252|gb|ADF41318.1| membrane endopeptidase [Bacillus megaterium DSM 319]
Length = 506
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 15/187 (8%)
Query: 229 ILVSIDVAVFLF-EIASPIRNSEFGFFSLPLL-YGAKINELILVGEWWRLVTPMFLHSGL 286
I +++ + +FLF E S +N+ L L+ YGAK N LI+ GEWWR TP+ LH GL
Sbjct: 183 IFLALQIFMFLFLEWKSSTQNT------LTLIQYGAKYNPLIMEGEWWRFFTPIILHIGL 236
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAII 346
H+ ++ AL G V + YG F IY G +G+L SF+ + G +G +F
Sbjct: 237 LHLLMNSVALYYLGTLVERIYGSGRFVFIYIFAGFAGSLGSFIWNTSISAGASGAIFGCF 296
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
GA L N + + +++ F+ N VD H+G G++ GFL
Sbjct: 297 GALLFLARTNPRFFFRTMGSSFIVIIVINLIFGFVAPN---VDNAGHIG----GLVGGFL 349
Query: 407 TCPLVQL 413
+V L
Sbjct: 350 AASIVSL 356
>gi|410452631|ref|ZP_11306595.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
gi|409934113|gb|EKN71029.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
Length = 193
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 11/184 (5%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 285
L+SI+V+I + +FL I N F + + +N I+ GE WRL+TP F+HSG
Sbjct: 17 LVSIIVTIHIILFLLTILPIFPNQWF------IETFSGVNLYIMEGEVWRLITPTFMHSG 70
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGPVF 343
H+ + ++L+ FGP + + G F +Y L G+ N+ + L P VG +G +F
Sbjct: 71 FAHMLFNSFSLVLFGPALERMLGGGRFLFVYLLSGLIANVATLLLEPLTYTHVGSSGAIF 130
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
+ G ++ K +++K S+ + ++S ++F N ++ AHL +G +
Sbjct: 131 GLFGYYIAIIIFRKHMLSKQNSQIILVLCVVSLIMTFFQPN---INITAHLFGLISGFLL 187
Query: 404 GFLT 407
GF +
Sbjct: 188 GFFS 191
>gi|148657883|ref|YP_001278088.1| rhomboid family protein [Roseiflexus sp. RS-1]
gi|148569993|gb|ABQ92138.1| Rhomboid family protein [Roseiflexus sp. RS-1]
Length = 283
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
Query: 229 ILVSIDVAVF----LFEIASPIRNSEFGFFSLPLLYGAKINELILVG-EWWRLVTPMFLH 283
IL++I++ VF L ++ + L L++GAK N I +G +++R +T MFLH
Sbjct: 50 ILLTINILVFVGPWLLDVIGIRIAGVVSVYELTLIWGAKENAAISIGGQYYRFLTAMFLH 109
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVF 343
+ H+ + +AL + G + + +G F +Y + G+ G + S+ P P+VG +G +F
Sbjct: 110 GSIAHLFFNSFALYSLGFEAERIFGSQRFLALYLIAGLGGGVMSYAFNPNPSVGASGAIF 169
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGII 402
+IGA + + + ++ ++ + I ++ + P +D AH+G TG +
Sbjct: 170 GLIGALIAFYVVARSVLG-GIARQQLGSLIFVVMINLALGFTSPYIDNNAHIGGLLTGAV 228
Query: 403 YGFLTCP 409
G+L P
Sbjct: 229 IGWLLAP 235
>gi|149183248|ref|ZP_01861692.1| YdcA [Bacillus sp. SG-1]
gi|148849044|gb|EDL63250.1| YdcA [Bacillus sp. SG-1]
Length = 212
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
A IN I GEWWRL+TP+F+H G H+ + ++L+ F P + + G F F +IY GI
Sbjct: 58 AGINLYIFNGEWWRLITPIFVHLGFAHLLFNSFSLILFAPPLERMLGKFKFTIIYLTCGI 117
Query: 322 SGNLTSFLHTPEPT--VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ N+ ++ P VG +G +F + G ++ +K LI+ + + ++ ++
Sbjct: 118 AANIATYFLKPLTYNHVGASGAIFGLFGIYVGMTLFHKHLISTQNKQVIIPIVVIGLVMT 177
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCP 409
F +N ++ AHL +G++ +L P
Sbjct: 178 FFQAN---INITAHLVGLLSGLVISWLLLP 204
>gi|339448421|ref|ZP_08651977.1| peptidase S54, rhomboid domain-containing protein [Lactobacillus
fructivorans KCTC 3543]
Length = 224
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 8/155 (5%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA+ N+L+ G+WWRL+TP+F+H G H+ ++ L G + G +F+I+ +
Sbjct: 45 FGAQSNQLVRDGQWWRLITPIFVHIGFQHILINGITLYYLGKLIEPIVGHLRYFIIFMVS 104
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GNL SF + G + +F + GA+L+ FQ + D + +L ++
Sbjct: 105 GICGNLMSFALGNGISAGSSTAIFGLFGAFLMIAFQYR---GNDFVRSTAKTFVLFVVIN 161
Query: 380 FIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ F P +D + H+G G I G+L +V L
Sbjct: 162 LVFDIFTPGIDIYGHIG----GFIGGYLVSFVVGL 192
>gi|261343422|ref|ZP_05971067.1| rhomboid protease AarA [Providencia rustigianii DSM 4541]
gi|282568565|gb|EFB74100.1| rhomboid protease AarA [Providencia rustigianii DSM 4541]
Length = 672
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 39/215 (18%)
Query: 226 LISILVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
L ++V++++A++ +++ A+P+ + E+ LL+GA + +L L G+WWR M LH
Sbjct: 25 LTLLIVTLNIAIYFYQLNFAAPLESQEYNL----LLFGANVYQLSLTGDWWRYPISMVLH 80
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF--------------- 328
SG H+ L+ ALL G + +++G F + IY GI G S
Sbjct: 81 SGWVHLGLNTLALLVIGIECERAFGKFRYLAIYLFAGIVGAFVSAAWQYQEALNSVMRRF 140
Query: 329 -------LHTPEPTV------GGTGPVFAIIGA---WLIYQFQNKDLI--AKDVSERMFQ 370
L + TV G +G + + A L+ + +L A+D +R
Sbjct: 141 DMMSWGSLLQNDNTVYITVSLGASGAIMGLAAASVIELLKRLSKPELTKEARDALKRPLY 200
Query: 371 KAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGF 405
I AL+ I VD AH+G A G + GF
Sbjct: 201 NIIAMIALTLINGLQSGVDNAAHIGGAVAGAVIGF 235
>gi|345022776|ref|ZP_08786389.1| hypothetical protein OTW25_15910 [Ornithinibacillus scapharcae
TW25]
Length = 254
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 255 SLPL---LY--GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGP 309
S+PL LY G + +I GE+WR +TP+FLH GL H+ + ++L+ FGP + + G
Sbjct: 37 SIPLFERLYDLGVGHHYMIHQGEYWRFITPIFLHGGLMHMLFNSFSLVLFGPALERMIGK 96
Query: 310 FTFFLIYTLGGISGNLTSFLHTPE---PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSE 366
F + Y G+ N+T+F P P VG +G +F + G ++ K LI ++
Sbjct: 97 SMFLIAYLGAGVLANITTFFINPSFMFPHVGASGAIFGLFGIYIFMVVFRKSLIDSQNAQ 156
Query: 367 RMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
+ ++ ++FI ++ +AH+ G GFL PLV
Sbjct: 157 IVTVIFLIGLIMTFIRPG---INQYAHI----LGFAAGFLIAPLV 194
>gi|300694566|ref|YP_003750539.1| rhomboid protease [Ralstonia solanacearum PSI07]
gi|299076603|emb|CBJ35939.1| putative rhomboid protease [Ralstonia solanacearum PSI07]
Length = 543
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 18/207 (8%)
Query: 210 ERDLALQRTEETSNLYLISILVSIDVAVFLFEIA-------SPIRNSEFGFFSLPLLYGA 262
ER A Q T YL L++++V V+L + +PI F L G
Sbjct: 165 ERQFAEQLEALTPRPYLTHALIALNVLVWLATLGLGGNLLQTPIDV----LFKL----GG 216
Query: 263 KINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGIS 322
+ GEWWRL++ FLH+G+ H+A++ L G V + YGP + LIY G+
Sbjct: 217 NAAFEVQHGEWWRLLSATFLHAGVLHLAINVIGLYATGIAVERIYGPAAYLLIYLGAGLL 276
Query: 323 GNL--TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
G+ SF VG +G VF + GAWL+ + + + + +S+R+ + + S
Sbjct: 277 GSALSLSFAAQHAIGVGASGAVFGVAGAWLMAICRYRGQMPETLSKRLLTQLGVFVLYSL 336
Query: 381 IISNFGP-VDTWAHLGAAFTGIIYGFL 406
+ P VD AH+G G + +
Sbjct: 337 VQGLTKPGVDNAAHIGGLVGGCMLALI 363
>gi|344175988|emb|CCA87141.1| putative rhomboid protease [Ralstonia syzygii R24]
Length = 543
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 8/202 (3%)
Query: 210 ERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELIL 269
ER Q T YL L++++V V+L A+P + +L+ N
Sbjct: 165 ERQFTEQLEALTPRPYLTHALIALNVLVWL---ATPGLGGNLLQTPIDVLFKLGGNAAFE 221
Query: 270 V--GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-- 325
V GEWWRL++ FLH+G+ H+ ++ L G V + YGP + LIY G+ G+
Sbjct: 222 VQHGEWWRLLSATFLHAGVLHLVINVIGLYATGIAVERIYGPAAYLLIYLGAGLLGSALS 281
Query: 326 TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF 385
SF VG +G VF + GAWL+ + + + +S+R+ + + S +
Sbjct: 282 LSFAAQHAIGVGASGAVFGVAGAWLVAICRYRGQMPATLSKRLLTQLGMFVLYSLVQGLT 341
Query: 386 GP-VDTWAHLGAAFTGIIYGFL 406
P VD AH+G G + +
Sbjct: 342 KPGVDNAAHIGGLVGGCMLALI 363
>gi|421896459|ref|ZP_16326856.1| membrane protein [Ralstonia solanacearum MolK2]
gi|206587624|emb|CAQ18206.1| membrane protein [Ralstonia solanacearum MolK2]
Length = 458
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSF 328
GEWWRL++ FLH+G+ H+A++ L G V + YGP + LIY G+ G+ SF
Sbjct: 140 GEWWRLLSATFLHAGVLHLAINMVGLYATGITVERIYGPAAYLLIYLGAGLLGSALSLSF 199
Query: 329 LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP- 387
VG +G VF + GAWL+ + + L+ + +S+R+ + L S P
Sbjct: 200 AAQHAIGVGASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLAQGLTKPG 259
Query: 388 VDTWAHLGAAFTGIIYGFL 406
VD AH+G G + +
Sbjct: 260 VDNAAHIGGLVGGCVLAMI 278
>gi|297205734|ref|ZP_06923129.1| S54 family peptidase [Lactobacillus jensenii JV-V16]
gi|297148860|gb|EFH29158.1| S54 family peptidase [Lactobacillus jensenii JV-V16]
Length = 229
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 38/202 (18%)
Query: 261 GAKIN-ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA+ N +I++G+WWRL T FLH GL H+ ++C L G + G F +IY L
Sbjct: 46 GAQFNPAVIILGQWWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLA 105
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
G+ GNL + + V G + +F + GA +IA ++ R +
Sbjct: 106 GVGGNLMTLAFGSDNAVSAGASTALFGLFGA----------MIALGIANRTHEGMAYLGR 155
Query: 378 LSFIIS--------NFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLI 429
SF+++ N +DTW H+G G+I GFL V LGD + +
Sbjct: 156 QSFVLAVINLLFDINVPQIDTWGHVG----GLIAGFLLT--VILGDQN-----------L 198
Query: 430 RQYANPCKSLIVFTIFVIILGS 451
R Y P K L + V IL +
Sbjct: 199 RGYKLPIKILAALALIVFILAT 220
>gi|311031134|ref|ZP_07709224.1| hypothetical protein Bm3-1_11396 [Bacillus sp. m3-13]
Length = 237
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 265 NELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN 324
N I GEWWRLVTP+FLH+ L H + +L+ FGP V + G F Y LGGI N
Sbjct: 46 NLFIWQGEWWRLVTPIFLHASLTHFLFNSLSLVLFGPAVERMLGKGKFITFYLLGGILAN 105
Query: 325 LTSFLHTPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 382
+ + L P+ +G +G +FAI G + F DL+ + S+ + + ++F+
Sbjct: 106 VATLLLKPDIYSHLGASGAIFAIFGLYFYMVFLRPDLLDRANSQVILTILGVGLVMTFLN 165
Query: 383 SNFGPVDTWAHLGAAFTGII 402
SN ++ AHL F G +
Sbjct: 166 SN---INWIAHLFGFFAGTV 182
>gi|163790986|ref|ZP_02185408.1| small hydrophobic molecule transporter protein, putative
[Carnobacterium sp. AT7]
gi|159873725|gb|EDP67807.1| small hydrophobic molecule transporter protein, putative
[Carnobacterium sp. AT7]
Length = 235
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N I++GEWWRL+TPMFLH G H+ ++ L G Q+ +G F IY L
Sbjct: 48 YGAKFNPYIVLGEWWRLITPMFLHIGFIHLLMNSVILYYLGEQLEGMFGHLRFAGIYLLS 107
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGA 348
GI+GNL SF + + G + +F + G+
Sbjct: 108 GIAGNLASFAFSDALSAGASTALFGLFGS 136
>gi|383786745|ref|YP_005471314.1| hypothetical protein [Fervidobacterium pennivorans DSM 9078]
gi|383109592|gb|AFG35195.1| putative membrane protein [Fervidobacterium pennivorans DSM 9078]
Length = 233
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
LL+GA+ L+ GEWWR+VT MF+H G H+A + +AL G YG + F +
Sbjct: 44 LLFGAQYGPLVDQGEWWRIVTAMFMHGGFLHLAFNMYALYILGSYAEGIYGTYRFLSYFI 103
Query: 318 LGGISGNL-TSFLHTPEPTVGGTGPVFAIIGAWLIYQF-QNKDLIAKDVS-ERMFQKAIL 374
L GI+GN+ T F + +VG +G +F ++GA F ++ K ++ + IL
Sbjct: 104 LTGIAGNIATHFFYHDSLSVGASGAIFGLVGALFAAGFRKDTPFFLKPITGSALLPMIIL 163
Query: 375 STALSFI 381
+ AL FI
Sbjct: 164 NVALGFI 170
>gi|311071132|ref|YP_003976055.1| hypothetical protein BATR1942_21045 [Bacillus atrophaeus 1942]
gi|419823027|ref|ZP_14346590.1| hypothetical protein UY9_16511 [Bacillus atrophaeus C89]
gi|310871649|gb|ADP35124.1| hypothetical protein BATR1942_21045 [Bacillus atrophaeus 1942]
gi|388472834|gb|EIM09594.1| hypothetical protein UY9_16511 [Bacillus atrophaeus C89]
Length = 199
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL- 329
GEWWRL+TP+FLH+G H+ + ++ F P + + G F L+Y GI GN+ ++
Sbjct: 56 GEWWRLITPIFLHAGFAHLLFNSMSIFLFAPALERLLGKARFLLVYVGSGIIGNVGTYFT 115
Query: 330 -HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
VG +G +F + G +L K+LI ++ S+ + +++ ++FI SN +
Sbjct: 116 ESLDYVHVGASGAIFGLFGVYLYMVLYRKELIDQENSKMIITLLVVAVLMTFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NVMAHLFGLVGGFVLSFL 190
>gi|207738893|ref|YP_002257286.1| membrane protein [Ralstonia solanacearum IPO1609]
gi|206592264|emb|CAQ59170.1| membrane protein [Ralstonia solanacearum IPO1609]
Length = 543
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSF 328
GEWWRL++ FLH+G+ H+A++ L G V + YGP + LIY G+ G+ SF
Sbjct: 225 GEWWRLLSATFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSF 284
Query: 329 LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP- 387
VG +G VF + GAWL+ + + L+ + +S+R+ + L S P
Sbjct: 285 AAQHAIGVGASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLAQGLTKPG 344
Query: 388 VDTWAHLGAAFTGIIYGFL 406
VD AH+G G + +
Sbjct: 345 VDNAAHIGGLVGGCMLAMI 363
>gi|227432339|ref|ZP_03914331.1| S54 family peptidase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|381336263|ref|YP_005174038.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides J18]
gi|227351860|gb|EEJ42094.1| S54 family peptidase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|356644229|gb|AET30072.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides J18]
Length = 227
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 99/196 (50%), Gaps = 16/196 (8%)
Query: 214 ALQRTEETSNLYLISILVSIDVAVFLFEIA---SPIRNSEFGFFSLPLLYGAKINELI-L 269
AL+ +T+ + I LV+ VFL E+ NSEF + GAK I L
Sbjct: 3 ALKEQYQTAPITTIIFLVT--TFVFLIELVLSRGTTENSEF-----LINMGAKWGPYIQL 55
Query: 270 VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL 329
E+WRL+TP+FLH+G H+ + L GP V +++G FF +Y GGI GN+ S+L
Sbjct: 56 KHEYWRLLTPVFLHAGFLHIVTNMITLWFIGPLVERAFGSAKFFGLYFFGGIIGNIFSYL 115
Query: 330 HTPEP-TVGGTGPVFAIIGAWLIYQFQNK-DLIAKDVSERMFQKAILSTALSFIISNFGP 387
P +VG + +FA+ G ++Y + K D K + + IL+ F ++
Sbjct: 116 LAPSSVSVGASTALFAMFGGLILYAIRFKEDPQVKSMGTMLGLFVILNLVTGFSSTD--- 172
Query: 388 VDTWAHLGAAFTGIIY 403
+D W H+G G+++
Sbjct: 173 IDIWGHIGGLIGGMMF 188
>gi|116617786|ref|YP_818157.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116096633|gb|ABJ61784.1| Membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 227
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 99/196 (50%), Gaps = 16/196 (8%)
Query: 214 ALQRTEETSNLYLISILVSIDVAVFLFEIA---SPIRNSEFGFFSLPLLYGAKINELI-L 269
AL+ +T+ + I LV+ VFL E+ NSEF + GAK I L
Sbjct: 3 ALKEQYQTAPITTIIFLVT--TFVFLIELVLSRGTTENSEF-----LINMGAKWGPYIQL 55
Query: 270 VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL 329
E+WRL+TP+FLH+G H+ + L GP V +++G FF +Y GGI GN+ S+L
Sbjct: 56 KHEYWRLLTPVFLHAGFLHIVTNMITLWFIGPLVERAFGSTKFFGLYFFGGIIGNIFSYL 115
Query: 330 HTPEP-TVGGTGPVFAIIGAWLIYQFQNK-DLIAKDVSERMFQKAILSTALSFIISNFGP 387
P +VG + +FA+ G ++Y + K D K + + IL+ F ++
Sbjct: 116 LAPSSVSVGASTALFAMFGGLILYAIRFKEDPQVKSMGTMLGLFVILNLVTGFSSTD--- 172
Query: 388 VDTWAHLGAAFTGIIY 403
+D W H+G G+++
Sbjct: 173 IDIWGHIGGLIGGMMF 188
>gi|83745575|ref|ZP_00942633.1| transmembrane hypothetical [Ralstonia solanacearum UW551]
gi|83727652|gb|EAP74772.1| transmembrane hypothetical [Ralstonia solanacearum UW551]
Length = 569
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSF 328
GEWWRL++ FLH+G+ H+A++ L G V + YGP + LIY G+ G+ SF
Sbjct: 251 GEWWRLLSATFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSF 310
Query: 329 LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP- 387
VG +G VF + GAWL+ + + L+ + +S+R+ + L S P
Sbjct: 311 AAQHAIGVGASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLAQGLTKPG 370
Query: 388 VDTWAHLGAAFTGIIYGFL 406
VD AH+G G + +
Sbjct: 371 VDNAAHIGGLVGGCMLAMI 389
>gi|336417117|ref|ZP_08597446.1| hypothetical protein HMPREF1017_04554 [Bacteroides ovatus
3_8_47FAA]
gi|335936742|gb|EGM98660.1| hypothetical protein HMPREF1017_04554 [Bacteroides ovatus
3_8_47FAA]
Length = 592
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 18/223 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ I++ VF+ IAS + SL L +GA L L G+WWR VT F+H G FH
Sbjct: 166 ILIDINILVFIVMIASGVGIMSPSTLSL-LKWGADFGPLTLTGDWWRTVTCNFIHIGAFH 224
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 225 LLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISAGASGSIFGLYG 284
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHLGAAFTGII 402
+L + ++ IAK+ +KA+L++ L F+ N +D AH+G +G +
Sbjct: 285 IFLAFLLFHR--IAKEQ-----RKALLTSILIFVGYNLVYGMKAGIDNAAHIGGLLSGFV 337
Query: 403 YGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIF 445
G + +G + + +++I + C L F I
Sbjct: 338 LGIIYV----VGYKFEKPDAQRTVSIIGELGIFCIFLFSFMIL 376
>gi|383113335|ref|ZP_09934107.1| hypothetical protein BSGG_3039 [Bacteroides sp. D2]
gi|382948721|gb|EFS32339.2| hypothetical protein BSGG_3039 [Bacteroides sp. D2]
Length = 592
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 18/223 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ I++ VF+ IAS + SL L +GA L L G+WWR VT F+H G FH
Sbjct: 166 ILIDINILVFIVMIASGVGIMSPSTLSL-LKWGADFGPLTLTGDWWRTVTCNFIHIGAFH 224
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 225 LLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISTGASGSIFGLYG 284
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHLGAAFTGII 402
+L + ++ IAK+ +KA+L++ L F+ N +D AH+G +G +
Sbjct: 285 IFLAFLLFHR--IAKEQ-----RKALLTSILIFVGYNLVYGMKAGIDNAAHIGGLLSGFV 337
Query: 403 YGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIF 445
G + +G + + +++I + C L F I
Sbjct: 338 LGIIYV----VGYKFEKPDAQRTVSIIGELGIFCIFLFSFMIL 376
>gi|388498512|gb|AFK37322.1| unknown [Lotus japonicus]
Length = 220
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 78/134 (58%), Gaps = 9/134 (6%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
+IL++ +V F+ ++A+ + LL+GAK+N LI G+ WRL T FLH+ +
Sbjct: 14 NILLAANVLFFIAQLATQGK---------LLLWGAKVNSLIDKGQIWRLATSSFLHANIG 64
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+ ++C++L + GP V + GP F +Y + I+ + S+ P VG +G +F ++G
Sbjct: 65 HLMINCFSLNSVGPTVERFSGPRRFLAVYFISAIASSAMSYWFCKMPAVGASGAIFGLVG 124
Query: 348 AWLIYQFQNKDLIA 361
+ ++ +++D++
Sbjct: 125 SVAVFVLRHRDIVG 138
>gi|299149420|ref|ZP_07042477.1| putative peptidase, S54 (rhomboid) family [Bacteroides sp. 3_1_23]
gi|298512607|gb|EFI36499.1| putative peptidase, S54 (rhomboid) family [Bacteroides sp. 3_1_23]
Length = 592
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 18/223 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ I++ VF+ IAS + SL L +GA L L G+WWR VT F+H G FH
Sbjct: 166 ILIDINILVFIVMIASGVGIMSPSTLSL-LKWGADFGPLTLTGDWWRTVTCNFIHIGAFH 224
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 225 LLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISAGASGSIFGLYG 284
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHLGAAFTGII 402
+L + ++ IAK+ +KA+L++ L F+ N +D AH+G +G +
Sbjct: 285 IFLAFLLFHR--IAKEQ-----RKALLTSILIFVGYNLVYGMKAGIDNAAHIGGLLSGFV 337
Query: 403 YGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIF 445
G + +G + + +++I + C L F I
Sbjct: 338 LGIIYV----VGYKFEKPDAQRTVSIIGELGIFCIFLFSFMIL 376
>gi|403380902|ref|ZP_10922959.1| rhomboid family protein [Paenibacillus sp. JC66]
Length = 201
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
EWWR MFLH G H+ ++C+AL F P + + G F + L Y L G SG+L S+L
Sbjct: 60 EWWRYFASMFLHFGFMHLLMNCFALYVFAPPLERMIGSFRYLLFYLLSGFSGSLISYLLM 119
Query: 332 PEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
E TV G +G V+ + A+L KD++ + + K IL L I S V
Sbjct: 120 SERTVSAGASGAVYGVFAAYLFLAIFRKDVLDAQSGQTI--KTILIVGL--IYSLLPGVS 175
Query: 390 TWAHLGAAFTGIIYGFLTCPLVQL 413
+ HLG G I GF + L
Sbjct: 176 FFGHLG----GFIGGFALMAIFSL 195
>gi|423298194|ref|ZP_17276253.1| hypothetical protein HMPREF1070_04918 [Bacteroides ovatus
CL03T12C18]
gi|392663610|gb|EIY57158.1| hypothetical protein HMPREF1070_04918 [Bacteroides ovatus
CL03T12C18]
Length = 592
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 18/223 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ I++ VF+ IAS + SL L +GA L L G+WWR VT F+H G FH
Sbjct: 166 ILIDINILVFIVMIASGVGIMSPSTLSL-LKWGADFGPLTLTGDWWRTVTCNFIHIGAFH 224
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 225 LLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISAGASGSIFGLYG 284
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHLGAAFTGII 402
+L + ++ IAK+ +KA+L++ L F+ N +D AH+G +G +
Sbjct: 285 IFLAFLLFHR--IAKEQ-----RKALLTSILIFVGYNLVYGMKAGIDNAAHIGGLLSGFV 337
Query: 403 YGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIF 445
G + +G + + +++I + C L F I
Sbjct: 338 LGIIYV----VGYKFEKPDAQRTVSIIGELGIFCIFLFSFMIL 376
>gi|418576075|ref|ZP_13140221.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325137|gb|EHY92269.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 489
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 35/238 (14%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ ++V ++LF + R+S+ + G ++ ++ GEW+RL+T +FLH H+
Sbjct: 166 LIILNVVIWLFMVLFLNRSSDLKLLDV----GGLVHFNVVHGEWYRLITSIFLHYNFEHI 221
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + F+IY + G+ GN S +T +VG +G +F +IGA
Sbjct: 222 LMNMLSLFIFGKIVESIVGHWRMFVIYLVAGLFGNFASLSFNTDTVSVGASGAIFGLIGA 281
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + K K + + + I+ LS + N V AH+G G++
Sbjct: 282 IFTFMYIGKQFNRKLIGQLLIVLVIM-IGLSLFMQNINIV---AHIGGFIGGLL------ 331
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS---LIVFTIFVIILGSFIFVFEPPLDTL 463
ITL+ Y K+ +I+ TI V+ L + + +F D +
Sbjct: 332 -----------------ITLMGYYFKTNKTRFWIILITILVLFLAAQVRIFTIKEDNI 372
>gi|160886529|ref|ZP_02067532.1| hypothetical protein BACOVA_04540 [Bacteroides ovatus ATCC 8483]
gi|423289697|ref|ZP_17268547.1| hypothetical protein HMPREF1069_03590 [Bacteroides ovatus
CL02T12C04]
gi|156108414|gb|EDO10159.1| peptidase, S54 family [Bacteroides ovatus ATCC 8483]
gi|392667408|gb|EIY60918.1| hypothetical protein HMPREF1069_03590 [Bacteroides ovatus
CL02T12C04]
Length = 592
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 18/223 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ I++ VF+ IAS + SL L +GA L L G+WWR VT F+H G FH
Sbjct: 166 ILIDINILVFIVMIASGVGIMSPSTLSL-LKWGADFGPLTLTGDWWRTVTCNFIHIGAFH 224
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 225 LLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISAGASGSIFGLYG 284
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHLGAAFTGII 402
+L + ++ IAK+ +KA+L++ L F+ N +D AH+G +G +
Sbjct: 285 IFLAFLLFHR--IAKEQ-----RKALLASILIFVGYNLVYGMKAGIDNAAHIGGLLSGFV 337
Query: 403 YGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIF 445
G + +G + + +++I + C L F I
Sbjct: 338 LGIIYV----VGYKFEKPDAQRTVSIIGELGIFCIFLFSFMIL 376
>gi|237723366|ref|ZP_04553847.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229447888|gb|EEO53679.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 584
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 18/223 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ I++ VF+ IAS + SL L +GA L L G+WWR VT F+H G FH
Sbjct: 158 ILIDINILVFIVMIASGVGIMSPSTLSL-LKWGADFGPLTLTGDWWRTVTCNFIHIGAFH 216
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 217 LLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISTGASGSIFGLYG 276
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHLGAAFTGII 402
+L + ++ IAK+ +KA+L++ L F+ N +D AH+G +G +
Sbjct: 277 IFLAFLLFHR--IAKEQ-----RKALLTSILIFVGYNLVYGMKAGIDNAAHIGGLLSGFV 329
Query: 403 YGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIF 445
G + +G + + +++I + C L F I
Sbjct: 330 LGIIYV----VGYKFEKPDAQRTVSIIGELGIFCIFLFSFMIL 368
>gi|293373190|ref|ZP_06619552.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
gi|292631838|gb|EFF50454.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
Length = 584
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 18/223 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ I++ VF+ IAS + SL L +GA L L G+WWR VT F+H G FH
Sbjct: 158 ILIDINILVFIVMIASGVGIMSPSTLSL-LKWGADFGPLTLTGDWWRTVTCNFIHIGAFH 216
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 217 LLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISTGASGSIFGLYG 276
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHLGAAFTGII 402
+L + ++ IAK+ +KA+L++ L F+ N +D AH+G +G +
Sbjct: 277 IFLAFLLFHR--IAKEQ-----RKALLTSILIFVGYNLVYGMKAGIDNAAHIGGLLSGFV 329
Query: 403 YGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIF 445
G + +G + + +++I + C L F I
Sbjct: 330 LGIIYV----VGYKFEKPDAQRTVSIIGELGIFCIFLFSFMIL 368
>gi|168699238|ref|ZP_02731515.1| Rhomboid-like protein [Gemmata obscuriglobus UQM 2246]
Length = 418
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 113/248 (45%), Gaps = 24/248 (9%)
Query: 218 TEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLV 277
TE T + +LV+I++ +F AS + ++ L L +GA L GEWWR +
Sbjct: 67 TEITPRPTVTRVLVAINLVIFGLMGASGLSLNQPSPAEL-LKWGADFGPNTLNGEWWRAL 125
Query: 278 TPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE-PTV 336
T MF+H G+ H+ ++ W L GP V + G F + Y + G+ G+L S P +
Sbjct: 126 TCMFVHIGILHILMNMWVLSATGPLVERMLGNAGFLVAYLVSGLGGSLASLWLNPGVVSA 185
Query: 337 GGTGPVFAIIGAWL-IYQFQNKDLIAKDVSERMFQKAILSTALSFIISN--FGPVDTWAH 393
G +G VF I GA L + Q Q + ++ + ++ L F+ N FG
Sbjct: 186 GASGAVFGIYGALLGLLQRQRTSIPPAALT------GLKNSGLGFLAYNVFFGLTQPNID 239
Query: 394 LGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIV-FTIFVII-LGS 451
L A G + GFL C LV SR G+ A P ++ + F FV+I +G
Sbjct: 240 LAAHAGGFVTGFL-CGLVL-----SRPFTPAGVA-----ARPTRNFVTGFGGFVVITVGL 288
Query: 452 FIFVFEPP 459
+ PP
Sbjct: 289 TLLSVAPP 296
>gi|300853810|ref|YP_003778794.1| membrane-associated protein [Clostridium ljungdahlii DSM 13528]
gi|300433925|gb|ADK13692.1| putative membrane-associated protein [Clostridium ljungdahlii DSM
13528]
Length = 337
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 92/158 (58%), Gaps = 5/158 (3%)
Query: 229 ILVSIDVAVFLFE--IASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGL 286
I+++++VAV+ ++ I +S ++ + GAK+N LI GE++RL T MFLH+G+
Sbjct: 155 IIIALNVAVYTVTAYLSGNIFDSNI---NVLVFMGAKVNSLIASGEYYRLFTCMFLHAGI 211
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAII 346
H+ ++ ++L G V K YG + ++Y + G+ ++ SF+ + +VG +G +F ++
Sbjct: 212 VHLGVNMYSLYIMGSFVEKVYGKVKYIVMYLISGLVSSVFSFMFSSSISVGASGAIFGLL 271
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN 384
GA L++ + K I K+ + +++ + F I+N
Sbjct: 272 GAALVFAIKMKHKIGKEFLMNVISIIVVNLIIGFSIAN 309
>gi|328957643|ref|YP_004375029.1| membrane endopeptidase [Carnobacterium sp. 17-4]
gi|328673967|gb|AEB30013.1| membrane endopeptidase [Carnobacterium sp. 17-4]
Length = 229
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGAK N I++GEWWRL+TPMFLH G H+ ++ L G Q+ +G F IY L
Sbjct: 42 YGAKFNPYIVLGEWWRLITPMFLHIGFIHLLMNSVILYYLGEQLEGMFGHLRFAGIYLLS 101
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGA 348
GI+GNL SF + + G + +F + G+
Sbjct: 102 GIAGNLASFAFSDALSAGASTALFGLFGS 130
>gi|430741443|ref|YP_007200572.1| hypothetical protein Sinac_0438 [Singulisphaera acidiphila DSM
18658]
gi|430013163|gb|AGA24877.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 654
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 20/167 (11%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS-FLHTP 332
WRL+T MFLH GL H+A++ W LLT GP V + +G F +Y L G+ G S F+H
Sbjct: 320 WRLLTSMFLHFGLIHLAMNLWCLLTTGPVVERFFGHLGFAALYVLSGLGGAAASLFVHPT 379
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN--FG---- 386
G +G +F + G L + +DV + Q + S L+F+ N FG
Sbjct: 380 FICAGASGAIFGVFGGLLGFLAIRH----RDVPPAILQP-MRSGTLAFLGYNVLFGLTSS 434
Query: 387 PVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYA 433
+D AHLG TG + G + A R ++ + + L+R+ A
Sbjct: 435 TIDMAAHLGGLATGFVVGLVL--------ADGRINRPDRVGLLRRVA 473
>gi|118483595|gb|ABK93694.1| unknown [Populus trichocarpa]
Length = 325
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 98/192 (51%), Gaps = 14/192 (7%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
+IL++I++ V+ +IA+ + L +GAK+N LI G++WRL T LH+ +
Sbjct: 119 NILLAINILVYFAQIATRGK---------LLFWGAKVNSLIDKGQFWRLATSSVLHANIG 169
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+ ++C++L + GP + GP F +Y I+ + S+ P VG +G +F ++G
Sbjct: 170 HLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASSAMSYWFCRAPAVGASGAIFGLVG 229
Query: 348 AWLIYQFQNKDLI--AKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGF 405
+ ++ +++ +I AK+ + + + L+ + + +D W HLG G+ +
Sbjct: 230 SLAVFVIRHRRMIGGAKEDLQNIAKVIFLNMMIGLLTKG---IDNWGHLGGLLGGVATSW 286
Query: 406 LTCPLVQLGDAS 417
P Q G S
Sbjct: 287 FVGPAWQYGTQS 298
>gi|418635278|ref|ZP_13197657.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
gi|374842000|gb|EHS05452.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
Length = 485
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++I++ ++L I R S + G ++ ++ GEW+RL+T MFLH H+
Sbjct: 162 LITINIVIWLSMILLLNRFSNIKLLDM----GGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V GP ++Y + G+ GN S +T + G +G +F +IGA
Sbjct: 218 LMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGNFLSLSFNTDTVSAGASGAIFGLIGA 277
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTAL----SFIISNFGPVDTWAHLGAAFTGII 402
++ +I+K S +M + +++ + S ++SN V+ AHLG +G++
Sbjct: 278 IIVMM-----IISKVYSRKMIGQLLIALVILIGFSLLLSN---VNIMAHLGGFISGLL 327
>gi|73662516|ref|YP_301297.1| hypothetical protein SSP1207 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495031|dbj|BAE18352.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 485
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 35/238 (14%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ ++V ++LF + R+S+ + G ++ ++ GEW+RL+T +FLH H+
Sbjct: 162 LIILNVVIWLFMVLFLNRSSDLKLLDI----GGLVHFNVVHGEWYRLITSIFLHYNFEHI 217
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + F+IY + G+ GN S +T +VG +G +F +IGA
Sbjct: 218 LMNMLSLFIFGKIVESIVGHWRMFVIYLVAGLFGNFASLSFNTDTVSVGASGAIFGLIGA 277
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + K K + + + I+ LS + N V AH+G G++
Sbjct: 278 IFTFMYIGKQFNRKLIGQLLIVLVIM-IGLSLFMQNINIV---AHIGGFIGGLL------ 327
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS---LIVFTIFVIILGSFIFVFEPPLDTL 463
ITL+ Y K+ +I+ TI V+ L + + +F D +
Sbjct: 328 -----------------ITLMGYYFKTNKTRFWIILITILVLFLAAQVRIFTIKEDNI 368
>gi|373464451|ref|ZP_09555990.1| peptidase, S54 family [Lactobacillus kisonensis F0435]
gi|371762653|gb|EHO51182.1| peptidase, S54 family [Lactobacillus kisonensis F0435]
Length = 220
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 20/178 (11%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK N I GE+WRL+TPMF+H G H+ ++ L G V + +G + F I+ +
Sbjct: 40 FGAKYNPAIRAGEYWRLITPMFIHIGFTHILMNGITLYFIGEYVEQLFGHWRFLTIFLVS 99
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GNL SF+ + T G + +F + GA++ ++ + S+ ++ T L
Sbjct: 100 GIVGNLASFVFSYGLTAGASTAIFGLFGAFM--------MLGESFSKNPVITSMAKTFLL 151
Query: 380 FIISNFGP------VDTWAHLGAAFTGIIYGFLTCPL--VQLGDASSRNSQEEGITLI 429
FI+ N G +D H+G G+I GFL + V G S GI L+
Sbjct: 152 FIVLNIGTDIFVQGIDIAGHIG----GLIGGFLIAYVVGVSFGKVSPIKRIIAGIMLV 205
>gi|296332829|ref|ZP_06875289.1| hypothetical protein BSU6633_17110 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673175|ref|YP_003864847.1| hypothetical protein BSUW23_02400 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|350264714|ref|YP_004876021.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|296150109|gb|EFG90998.1| hypothetical protein BSU6633_17110 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411419|gb|ADM36538.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
gi|349597601|gb|AEP85389.1| sporulation membrane protein and putative endopeptidase YdcA
[Bacillus subtilis subsp. spizizenii TU-B-10]
gi|407956158|dbj|BAM49398.1| hypothetical protein BEST7613_0467 [Bacillus subtilis BEST7613]
gi|407963429|dbj|BAM56668.1| hypothetical protein BEST7003_0467 [Bacillus subtilis BEST7003]
Length = 199
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL+TP+ LH+G H+ + ++ F P + + G F L+Y GI GN+ +++
Sbjct: 56 GEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVT 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L K+LI ++ S+ + + +SFI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRKELIGQEHSKMILTLLAFAVLMSFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NMMAHLFGLCGGFLLSFL 190
>gi|422015063|ref|ZP_16361669.1| hypothetical protein OOA_09928 [Providencia burhodogranariea DSM
19968]
gi|414100115|gb|EKT61738.1| hypothetical protein OOA_09928 [Providencia burhodogranariea DSM
19968]
Length = 291
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 49/257 (19%)
Query: 229 ILVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGL 286
ILV +++ ++L+++ ASP+ + E LL+GA + +L L G+WWR M LHS
Sbjct: 27 ILVLLNIGIYLYQLSFASPLESREDNL----LLFGANVYQLSLTGDWWRYPISMVLHSNS 82
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS----FLHTPEPT------- 335
H+ +C AL G + ++YG F IY + GI L S + T
Sbjct: 83 VHLGFNCLALFVIGIECERAYGKFRLLAIYIISGIGAALFSAYWQYYETLNAANSSNNVW 142
Query: 336 -----------VGGTGPVFAIIGAWLIYQFQ--NKDLIAKDVSE---RMFQKAILSTALS 379
VG +G + + A +IY + N I + E R I AL+
Sbjct: 143 QMDSTIYITIGVGASGAIMGLAAASVIYLLKAINSPTILPAIREKQKRQLYNIIAMIALT 202
Query: 380 FIISNFGPVDTWAHLGAAFTGIIY--GFLTCPLVQLGDASSRNSQEEGITLIRQYANPCK 437
I VD AH+G A G + G++ P RN ++ +A+ C
Sbjct: 203 LINGLQSGVDNAAHIGGAIIGALVSIGYVLMP------EKPRN--------LKFFAHICV 248
Query: 438 SLIVFTIFVIILGSFIF 454
+++ + ++ + SF F
Sbjct: 249 TVVAIGLLILFIHSFSF 265
>gi|443633959|ref|ZP_21118135.1| hypothetical protein BSI_32140 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443346155|gb|ELS60216.1| hypothetical protein BSI_32140 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 199
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL+TP+ LH+G H+ + ++ F P + + G F L+Y GI GN+ +++
Sbjct: 56 GEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVT 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L K+LI ++ S+ + + +SFI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRKELIGQEHSKMILTLLAFAVLMSFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NMMAHLFGLCGGFLLSFL 190
>gi|357128745|ref|XP_003566030.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 267
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 15/158 (9%)
Query: 265 NELILVGEWWRLVTPMFLHSGLFHVALSCWA-----------LLTFGPQVCKSYGPFTFF 313
N LI G+ WRL T LH GL H+A+ A L GP+V ++ GP F
Sbjct: 81 NALIKKGQIWRLATSCLLHGGLIHLAVRVSASVDIAVVNNVSLREVGPEVEEATGPRRFL 140
Query: 314 LIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAK--DVSERMFQK 371
IY ++G+L S+ + P++G +G + +IGA +Y ++N++ + K + + +
Sbjct: 141 AIYCTSAVTGSLMSYWFSARPSIGASGAICGLIGAQAVYVWRNQEYLEKSEETLKHIRYD 200
Query: 372 AILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCP 409
+L+ + I+ F ++ W HLG G + P
Sbjct: 201 VLLNAGIGLILWRF--INNWGHLGGLLRGAAVEWFVGP 236
>gi|256850860|ref|ZP_05556249.1| membrane-associated serine protease [Lactobacillus jensenii
27-2-CHN]
gi|260661071|ref|ZP_05861985.1| membrane-associated serine protease [Lactobacillus jensenii
115-3-CHN]
gi|256615922|gb|EEU21110.1| membrane-associated serine protease [Lactobacillus jensenii
27-2-CHN]
gi|260548008|gb|EEX23984.1| membrane-associated serine protease [Lactobacillus jensenii
115-3-CHN]
Length = 215
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 38/202 (18%)
Query: 261 GAKIN-ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA+ N +I++G+WWRL T FLH GL H+ ++C L G + G F +IY L
Sbjct: 32 GAQFNPAVIILGQWWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLA 91
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
G+ GNL + + V G + +F + GA +IA ++ R +
Sbjct: 92 GVGGNLMTMAFGSDNAVSAGASTALFGLFGA----------MIALGIANRTHEGMAYLGR 141
Query: 378 LSFIIS--------NFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLI 429
SF+++ N +DTW H+G G+I GFL V LGD + +
Sbjct: 142 QSFVLAVINLLFDINVPQIDTWGHVG----GLIAGFLLT--VILGDQN-----------L 184
Query: 430 RQYANPCKSLIVFTIFVIILGS 451
R Y P K L + V IL +
Sbjct: 185 RGYKLPIKILAALALIVFILAT 206
>gi|449446051|ref|XP_004140785.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
gi|449485528|ref|XP_004157199.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
Length = 323
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 125/287 (43%), Gaps = 41/287 (14%)
Query: 198 RELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIA---SPIRNSEFG-- 252
RE++N+ ++ TE +L+ + V ++AVF+ + P N EF
Sbjct: 9 REVKNRGSSSLSSSSYLIEDTETQWTSWLVPMFVVANIAVFIVVMYINNCPKHNDEFEGK 68
Query: 253 --------FFSLPL----LYGAKINELILVG-----------EWWRLVTPMFLHSGLFHV 289
F PL L+G L +G + WRL+T ++LH+G+FH+
Sbjct: 69 CVARFLERFSFQPLRENPLFGPSATTLEKMGALESTKVVNKHQAWRLITCIWLHAGVFHL 128
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTPEPTVGGTGPVFAIIGA 348
+ L+ G ++ + +G +IY + G G+ L+S L +VG +G +F ++GA
Sbjct: 129 LANMLCLVFIGTRLEQQFGFVRIGVIYLVSGFGGSVLSSLLIQNNISVGASGSLFGLLGA 188
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG-----PVDTWAHLGAAFTGIIY 403
L F N + + A L+T L I NFG V+ +AH+G TG +
Sbjct: 189 MLSELFTNWTIYTN-------KAAALATLLVIIFINFGIGLLPHVNNFAHIGGFLTGFLL 241
Query: 404 GFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
GF P + G RN G L +Y L + ++ ++I G
Sbjct: 242 GFALLPRPKYGWLEQRNLPGVGAGLSSKYKTYQYVLWIVSVVLLIAG 288
>gi|386335464|ref|YP_006031634.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
gi|334197914|gb|AEG71098.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
Length = 569
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSF 328
GEWWRL++ FLH+G+ H+A++ L G V + YGP + L Y G+ G+ SF
Sbjct: 251 GEWWRLLSATFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLTYLGAGLLGSALSLSF 310
Query: 329 LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP- 387
VG +G VF + GAWL+ + + L+ + +S+R+ + L S + P
Sbjct: 311 AAQHAIGVGASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLVQGLTKPG 370
Query: 388 VDTWAHLG 395
VD AH+G
Sbjct: 371 VDNAAHIG 378
>gi|255581209|ref|XP_002531417.1| KOM, putative [Ricinus communis]
gi|223528967|gb|EEF30959.1| KOM, putative [Ricinus communis]
Length = 340
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 89/166 (53%), Gaps = 14/166 (8%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
+IL++I++ VF + A+ + L +GAK+N LI G++WRLVT FLH+ +
Sbjct: 137 NILLAINILVFAAQFATQGK---------LLFWGAKVNSLIDKGQFWRLVTSSFLHANIG 187
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+ ++ ++L + GP + GP F +Y I+ + TS+ P VG +G +F ++G
Sbjct: 188 HLMVNSYSLNSIGPTIENLSGPRRFLAVYFTSAIASSATSYWFCKAPAVGASGAIFGLVG 247
Query: 348 AWLIYQFQNKDLI--AKDVSERMFQKAILSTALSFIISNFGPVDTW 391
+ ++ +++ +I K+ + + Q +L+ + + +D W
Sbjct: 248 SLAVFVIRHRGMIRGGKEELQHIAQVILLNMVIGILSRG---IDNW 290
>gi|169829737|ref|YP_001699895.1| hypothetical protein Bsph_4306 [Lysinibacillus sphaericus C3-41]
gi|168994225|gb|ACA41765.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 167
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YG + N LI GEWWR+ + MFLH+G H+ + ++L FGP++ K G F IY +
Sbjct: 4 YGIQANFLIQKGEWWRVFSAMFLHAGFMHMFFNTFSLYLFGPELEKIAGKARFITIYLVS 63
Query: 320 GISGNLTS--FLHTPEPTVGGTGPVFAIIGAW--LIYQFQNKDLIAKDVSERMFQKAILS 375
GI GN+ + F + ++G +G +F I GA+ L+Y + + + + I+S
Sbjct: 64 GIVGNMATYIFYDSSYASLGASGAIFGIFGAFGALVYYTRKTMPMLRKLIL---PIIIIS 120
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
++F+ N V+ +AHLG TG I G +
Sbjct: 121 VIMTFLQPN---VNVFAHLGGLVTGFILGLI 148
>gi|407478437|ref|YP_006792314.1| rhomboid family protein [Exiguobacterium antarcticum B7]
gi|407062516|gb|AFS71706.1| Rhomboid family protein [Exiguobacterium antarcticum B7]
Length = 248
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 95/200 (47%), Gaps = 15/200 (7%)
Query: 215 LQRTEE----TSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILV 270
RTE T + ++S+ + I VA+F+ E + N F PL YGA IN I
Sbjct: 2 FSRTENLQTFTRSYPVVSLFILIQVALFVIEQLNAFFNLGFS----PLSYGAAINLFIGN 57
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFL 329
GEWWR+VT FLH +H+A + +AL+ F P + + G F Y L G N LT F
Sbjct: 58 GEWWRVVTATFLHYDFWHIAFNTFALIIFAPALERMIGHAKFASFYLLVGTLANVLTYFT 117
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQN---KDLIAKDVSERMFQKAILSTALSFIISNFG 386
EP G G AI+G Y + + +I+ D + ++ + ++ + + SN
Sbjct: 118 KINEPFYGQAGASGAILGLLGFYVYLGRFKRTVISADDARLVYIFSAITAIFTLLGSN-- 175
Query: 387 PVDTWAHLGAAFTGIIYGFL 406
V + HL G + GF+
Sbjct: 176 -VSVFGHLYGFVLGFLAGFI 194
>gi|172058814|ref|YP_001815274.1| rhomboid family protein [Exiguobacterium sibiricum 255-15]
gi|171991335|gb|ACB62257.1| Rhomboid family protein [Exiguobacterium sibiricum 255-15]
Length = 248
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 100/210 (47%), Gaps = 19/210 (9%)
Query: 215 LQRTEE----TSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILV 270
RTE T + ++S+ + I VA+F+ E + N FGF PL YGA IN I
Sbjct: 2 FSRTENLQTFTRSYPVVSLFILIQVALFVIEQLNAFFN--FGF--SPLNYGAAINLFIGN 57
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFL 329
GEWWR+VT FLH +H+A + +AL+ F P + + G F Y L G N LT F
Sbjct: 58 GEWWRVVTATFLHYDFWHIAFNTFALIIFAPALERMIGHAKFASFYLLVGTLANVLTYFT 117
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQN---KDLIAKDVSERMFQKAILSTALSFIISNFG 386
EP G G AI+G Y + + +I+ D + ++ + ++ + + SN
Sbjct: 118 KINEPFYGQAGASGAILGLLGFYVYLGRFKRTVISADDARLVYIFSAITAIFTLLGSN-- 175
Query: 387 PVDTWAHLGAAFTGIIYGFL----TCPLVQ 412
V + HL G + GF+ T P +
Sbjct: 176 -VSVFGHLYGFVLGFLAGFIFGKGTVPFTR 204
>gi|299471469|emb|CBN79420.1| Protein secE/sec61-gamma protein; Rhomboid-like protein [Ectocarpus
siliculosus]
Length = 766
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 261 GAKINELIL-VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GAK +LI+ G+WWRL++PMFLH+G+ H + L G V + +G + IY +
Sbjct: 462 GAKRTDLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVASIYLVS 521
Query: 320 GISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
G+ G + S + P + VG +G +F + GA +QN + RMF + TA+
Sbjct: 522 GVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRC--RMFTVLFILTAV 579
Query: 379 SFIISNFGPVDTWAHLGAAFTGIIYGF 405
+ I+ +D +AH G G+ G
Sbjct: 580 NIILGLMPFLDNFAHCGGMLMGLFMGL 606
>gi|440784052|ref|ZP_20961473.1| hypothetical protein F502_15090 [Clostridium pasteurianum DSM 525]
gi|440219088|gb|ELP58303.1| hypothetical protein F502_15090 [Clostridium pasteurianum DSM 525]
Length = 325
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 8/196 (4%)
Query: 216 QRTEETSNLYLISILVSIDVAVFLFE--IASPIRNSEFGFFSLPLLYGAKINELILVGEW 273
Q ++ N + I++ I++AV+L ++ + N + + GAK N LI GE+
Sbjct: 130 QNKKDYKNSIVTYIIIGINIAVYLLSGVLSRNLFNIDINVLDIL---GAKDNYLINNGEY 186
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
+RL T MFLHSG+ H+A + +AL + G YG + +IY L GI + S++ +
Sbjct: 187 YRLFTCMFLHSGILHIASNMYALYSIGGLAESIYGRKKYIIIYILSGIIASTASYVFSNG 246
Query: 334 PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
+VG +G +F ++G L+ + K I + + + IL+ +SF I N +D AH
Sbjct: 247 ISVGASGAIFGVLGGVLVISHKLKHRIGSGLFKNIIFIIILNLFISFTIPN---IDISAH 303
Query: 394 LGAAFTGIIYGFLTCP 409
G GII +L P
Sbjct: 304 AGGLVAGIIISWLLFP 319
>gi|153955340|ref|YP_001396105.1| hypothetical protein CKL_2722 [Clostridium kluyveri DSM 555]
gi|219855759|ref|YP_002472881.1| hypothetical protein CKR_2416 [Clostridium kluyveri NBRC 12016]
gi|146348198|gb|EDK34734.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219569483|dbj|BAH07467.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 338
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 107/194 (55%), Gaps = 7/194 (3%)
Query: 195 KGYRELRNK--DGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFE--IASPIRNSE 250
+G REL N+ G+ + + + + + ++++++V V++ ++ I +S
Sbjct: 120 EGTRELANQILQGLIHIRNSENISSKKGIKEVVVTYVIIALNVLVYIVTSYLSGSIMDSN 179
Query: 251 FGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPF 310
++ + GAK+N LI G+++RL T MFLH+G+ H+ ++ ++L G + K YG
Sbjct: 180 V---NVLVFMGAKVNFLIAKGQYYRLFTCMFLHAGIVHLGVNMYSLYMMGTFIEKVYGKL 236
Query: 311 TFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ 370
+ +IY + G+ ++ S++ + +VG +G +F ++GA L++ + K +A++ +
Sbjct: 237 KYIIIYIISGLFSSIFSYMFSSSISVGASGAIFGLLGASLVFALKMKHSVAREFIMNIVA 296
Query: 371 KAILSTALSFIISN 384
+++ + F I+N
Sbjct: 297 IIVMNLIIGFSIAN 310
>gi|219121723|ref|XP_002181210.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407196|gb|EEC47133.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 342
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 77/133 (57%), Gaps = 7/133 (5%)
Query: 260 YGAKINELILVGE-WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
+G K++E IL GE +RL+TP+FLH G H+ + +L GP V + +G F Y +
Sbjct: 112 WGIKVSEKILRGEELYRLITPVFLHGGFGHIFTNMISLSRVGPDVERLFGSGRFLTTYMV 171
Query: 319 GGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLI---AKDVSERMFQKAILS 375
G++GNL S +P P +G +G VF ++GA+ ++ +N+ L+ + V+ + Q + +
Sbjct: 172 SGMTGNLLSAYMSPNPGLGASGAVFGVVGAYYVFLTRNEWLLGPAGQSVTSSITQTMLFN 231
Query: 376 T---ALSFIISNF 385
AL+ +I N+
Sbjct: 232 IFLGALNPVIDNW 244
>gi|420163079|ref|ZP_14669826.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|420167946|ref|ZP_14674598.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
gi|394234768|gb|EJD80342.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|394237974|gb|EJD83460.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
Length = 486
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IVFSLFMSN---INIMAHLGGFISGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + IIL IF
Sbjct: 329 -----------------ITLIGYYFKTQRSLFWSFLIVFLLIFIILQIRIF 362
>gi|242242821|ref|ZP_04797266.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|420174687|ref|ZP_14681135.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|420192300|ref|ZP_14698160.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
gi|242233722|gb|EES36034.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|394244591|gb|EJD89926.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|394261511|gb|EJE06308.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
Length = 486
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IGFSLFMSN---INIMAHLGGFISGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + IIL IF
Sbjct: 329 -----------------ITLIGYYFKAHRSLFWAFLIVFLLIFIILQIRIF 362
>gi|418411961|ref|ZP_12985227.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
gi|410891544|gb|EKS39341.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
Length = 486
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IVFSLFMSN---INIMAHLGGFISGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + IIL IF
Sbjct: 329 -----------------ITLIGYYFKTQRSLFWSFLIVFLLIFIILQIRIF 362
>gi|430805416|ref|ZP_19432531.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
gi|429502334|gb|ELA00646.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
Length = 533
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 19/219 (8%)
Query: 215 LQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLL--YGAKINELILVGE 272
+Q T LY + ++++V V+L ++ R + + +L +G + L G+
Sbjct: 166 MQALPRTWGLYSV---IAVNVLVWLIMLS---RGAALDGAAPKMLIDWGGNLGALTQDGQ 219
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLH 330
WWRL+T FLH L H+A + L G V + +G +F LIY G+ G+ S F
Sbjct: 220 WWRLLTATFLHGSLKHLAANMVVLYLLGKHVERFFGTRSFLLIYVGAGLLGSALSLYFAA 279
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL----STALSFIISNFG 386
+VG +G VF I GA L+ ++ + +++ R+ A++ S A F+ +
Sbjct: 280 QTSVSVGASGAVFGIGGALLVAALLHRRELPQNIRNRLVSDAVIMIGYSLAQGFLSTR-- 337
Query: 387 PVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEG 425
VD AH+G G++ C V+L + R G
Sbjct: 338 -VDNAAHVGGLIGGVLLAL--CLPVRLSPETYRKKLRRG 373
>gi|418606637|ref|ZP_13169907.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
gi|374407413|gb|EHQ78275.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
Length = 477
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IVFSLFMSN---INIMAHLGGFISGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + IIL IF
Sbjct: 329 -----------------ITLIGYYFKTQRSLFWSFLIVFLLIFIILQIRIF 362
>gi|27468153|ref|NP_764790.1| hypothetical protein SE1235 [Staphylococcus epidermidis ATCC 12228]
gi|57867074|ref|YP_188690.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251810965|ref|ZP_04825438.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|282876025|ref|ZP_06284892.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|293366490|ref|ZP_06613167.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646984|ref|ZP_12296833.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|417656060|ref|ZP_12305751.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|417659640|ref|ZP_12309240.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|417908746|ref|ZP_12552503.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|417912278|ref|ZP_12555973.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|417913747|ref|ZP_12557410.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|418609437|ref|ZP_13172589.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|418612797|ref|ZP_13175821.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|418616300|ref|ZP_13179225.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|418625262|ref|ZP_13187915.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|418626366|ref|ZP_13188978.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|418629382|ref|ZP_13191890.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|418665219|ref|ZP_13226669.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|419771673|ref|ZP_14297719.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|420165544|ref|ZP_14672235.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|420170258|ref|ZP_14676819.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|420183211|ref|ZP_14689344.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|420194847|ref|ZP_14700644.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|420197429|ref|ZP_14703153.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|420201679|ref|ZP_14707289.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|420206132|ref|ZP_14711642.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|420209055|ref|ZP_14714493.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|420214009|ref|ZP_14719289.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|420221664|ref|ZP_14726591.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|420225746|ref|ZP_14730573.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|420227336|ref|ZP_14732107.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|420229653|ref|ZP_14734358.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|420234711|ref|ZP_14739271.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|421606956|ref|ZP_16048207.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
gi|27315699|gb|AAO04834.1|AE016748_68 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637732|gb|AAW54520.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251805475|gb|EES58132.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|281295050|gb|EFA87577.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|291319259|gb|EFE59628.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329725333|gb|EGG61816.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|329735277|gb|EGG71569.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|329737310|gb|EGG73564.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|341651289|gb|EGS75094.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|341654769|gb|EGS78507.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|341656107|gb|EGS79830.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|374407651|gb|EHQ78503.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|374409194|gb|EHQ79994.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|374817874|gb|EHR82049.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|374821126|gb|EHR85193.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|374825404|gb|EHR89340.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|374832800|gb|EHR96505.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|374834085|gb|EHR97745.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|383360492|gb|EID37887.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|394235345|gb|EJD80917.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|394240596|gb|EJD86019.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|394249674|gb|EJD94887.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|394263907|gb|EJE08628.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|394266236|gb|EJE10882.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|394271947|gb|EJE16426.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|394277971|gb|EJE22288.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|394279283|gb|EJE23591.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|394283931|gb|EJE28092.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|394290290|gb|EJE34154.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|394293180|gb|EJE36903.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|394297267|gb|EJE40870.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|394298947|gb|EJE42502.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|394303954|gb|EJE47364.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|406657425|gb|EKC83813.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
Length = 486
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IVFSLFMSN---INIMAHLGGFISGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + IIL IF
Sbjct: 329 -----------------ITLIGYYFKTQRSLFWSFLIVFLLIFIILQIRIF 362
>gi|420211212|ref|ZP_14716586.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
gi|394281665|gb|EJE25891.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
Length = 486
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IVFSLFMSN---INIMAHLGGFISGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + IIL IF
Sbjct: 329 -----------------ITLIGYYFKTQRSLFWSFLIVFLLIFIILQIRIF 362
>gi|239617958|ref|YP_002941280.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
gi|239506789|gb|ACR80276.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
Length = 285
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 7/196 (3%)
Query: 216 QRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWR 275
R + +N +I I++++ V F+F ++ R + ++L L+YG +L G ++
Sbjct: 1 MRISKRTNATIILIIINLAVYFFVFILSHSRRTIDL--YNLILIYGGISRGALLRGLFYT 58
Query: 276 LVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPT 335
+T +FLH + H+ + +AL G V YG F + Y + GI GNLT+ TP T
Sbjct: 59 PLTALFLHGNMLHILFNMYALFQLGYLVEGIYGMRKFLIFYFVSGIIGNLTAATMTPYIT 118
Query: 336 VGGTGPVFAIIGAWLIYQF-QNKDLIAKDVSE-RMFQKAILSTALSFIISNFGPVDTWAH 393
+G + +F ++G F ++ ++ K V+ + +L+ +I N + AH
Sbjct: 119 IGSSSAIFGLVGVLFALGFKKDTPVVLKSVTGLSLLPIILLNLMFGLMIPN---ISNSAH 175
Query: 394 LGAAFTGIIYGFLTCP 409
+G G + G+ P
Sbjct: 176 VGGLIAGSLLGWFVLP 191
>gi|418605748|ref|ZP_13169055.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|420220495|ref|ZP_14725454.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|420232065|ref|ZP_14736707.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
gi|374401451|gb|EHQ72524.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|394285848|gb|EJE29914.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|394301787|gb|EJE45241.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
Length = 486
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGTIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IVFSLFMSN---INIMAHLGGFISGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + IIL IF
Sbjct: 329 -----------------ITLIGYYFKTQRSLFWSFLIVFLLIFIILQIRIF 362
>gi|14591283|ref|NP_143361.1| hypothetical protein PH1497 [Pyrococcus horikoshii OT3]
gi|3257922|dbj|BAA30605.1| 197aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 197
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 14/148 (9%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
A+IN L+ +G+WWRL+T +FLH G H L+ + L G + G F ++ +
Sbjct: 40 AQINGLVTLGQWWRLITAIFLHMGFIHFGLNIFWLFYLGIDLEGIVGTRRFLTVFFASAL 99
Query: 322 SGNLTSFLHTPEPTV---GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
GNL S + P P V G +G +F ++GA L + V R QKA+++ L
Sbjct: 100 VGNLLSLITLP-PYVASGGASGGLFGVVGA---------LLGIEGVLRRNIQKALINALL 149
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGF 405
F+I++ P V+ AH G TG+I+G+
Sbjct: 150 LFLINSIFPGVNAVAHFGGLVTGLIFGY 177
>gi|388500820|gb|AFK38476.1| unknown [Medicago truncatula]
Length = 327
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GAK+N LI G+ WRLVT FLH+ + H+ ++C++L + GP V GP + IY
Sbjct: 142 LSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGPTVESFSGPRRYLAIYF 201
Query: 318 LGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
I+ S+ P VG +G +F ++G+ ++ ++KDL+ + + +++
Sbjct: 202 ASSIASAAMSYRFCKMPAVGASGAIFGLVGSVAVFVLRHKDLVGGGIKDLQHIAQVIALN 261
Query: 378 LSFIISNFGPVDTW 391
L+ +S G +D W
Sbjct: 262 LAIGLSPTG-IDNW 274
>gi|338730738|ref|YP_004660130.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
gi|335365089|gb|AEH51034.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
Length = 230
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 15/185 (8%)
Query: 232 SIDVAVFLFEIAS-PI-RNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
++ +AVF+F ++S P+ RN + L + GA+ L+ GEW+R++T MF+H GL H+
Sbjct: 14 NVLIAVFMFFLSSIPVFRNQAY----LLIRLGAQYGPLVSGGEWYRVITAMFVHGGLLHL 69
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTPEPTVGGTGPVFAIIGA 348
+ +AL FG V YG F + Y L G GNL T + +VG +G +F ++G
Sbjct: 70 LFNSYALFYFGTIVESIYGTEKFVIFYLLAGAVGNLATHVFYYRSISVGASGAIFGLVGI 129
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSF-IISNFGP---VDTWAHLGAAFTGIIYG 404
F+ + R F L + F ++ F P ++ AHLG G+ G
Sbjct: 130 LFALGFRRDT----PIFMRQFTGMALLPMIIFNVVYGFMPGSNINNAAHLGGFLAGMAIG 185
Query: 405 FLTCP 409
+ P
Sbjct: 186 YFADP 190
>gi|418630551|ref|ZP_13193032.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
gi|374837741|gb|EHS01304.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
Length = 486
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IGFSLFMSN---INIMAHLGGFISGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + I+L IF
Sbjct: 329 -----------------ITLIGYYFKTHRSLFWAFLIVFLLIFIVLQIRIF 362
>gi|416125288|ref|ZP_11595886.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|420178246|ref|ZP_14684579.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|420180055|ref|ZP_14686315.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
gi|319400885|gb|EFV89104.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|394246872|gb|EJD92124.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|394251487|gb|EJD96572.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
Length = 486
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IGFSLFMSN---INIMAHLGGFISGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + I+L IF
Sbjct: 329 -----------------ITLIGYYFKTHRSLFWAFLIVFLLIFIVLQIRIF 362
>gi|126651489|ref|ZP_01723693.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
gi|126591742|gb|EAZ85838.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
Length = 207
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YG + N L+ GEWWR+ + +FLH+G HV + ++L FGP++ K G F IY +
Sbjct: 44 YGIQANFLVQKGEWWRVFSAIFLHAGFMHVFFNMFSLYLFGPELEKIAGKARFITIYLVS 103
Query: 320 GISGNLTS--FLHTPEPTVGGTGPVFAIIGAW--LIYQFQNKDLIAKDVSERMFQKAILS 375
GI GN+ + F + ++G +G +F I GA+ L+Y + + + + I+S
Sbjct: 104 GIVGNMATYIFYDSSYASLGASGAIFGIFGAFGALVYYTRRTMPMLRKLIL---PIIIIS 160
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
++F+ N V+ +AHLG TG I G +
Sbjct: 161 VIMTFLQPN---VNVFAHLGGLVTGFILGLI 188
>gi|296111906|ref|YP_003622288.1| small hydrophobic molecule transporter protein [Leuconostoc kimchii
IMSNU 11154]
gi|339490819|ref|YP_004705324.1| small hydrophobic molecule transporter protein [Leuconostoc sp. C2]
gi|295833438|gb|ADG41319.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc kimchii IMSNU 11154]
gi|338852491|gb|AEJ30701.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc sp. C2]
Length = 229
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 227 ISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELI-LVGEWWRLVTPMFLHSG 285
+SIL ++ V +F+ E+ ++ G L ++ GAK I L ++WRLVTP+FLH+G
Sbjct: 16 VSIL-TLTVLIFILELVIGGGQTDDG--QLLVVLGAKWGPYIKLHHDYWRLVTPLFLHAG 72
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGTGPVFA 344
HV + L GP V S+G F ++Y G+ GN+ S+L P +VG + +F
Sbjct: 73 FMHVFTNMLTLWFIGPLVESSFGSRKFLILYLFSGVIGNIFSYLFAPLTVSVGASSALFG 132
Query: 345 IIGAWLIYQFQNKDLIAKDVSERMFQKA---ILSTALSFIISNFGP--VDTWAHLGAAFT 399
+ G ++Y Q KD R+ + I+ AL+ +++ F +D W H+G
Sbjct: 133 LFGGMILYAIQFKD------DPRIRSQGTVMIMFVALN-LVTGFATTGIDMWGHIGGLVG 185
Query: 400 GIIY 403
G+I+
Sbjct: 186 GMIF 189
>gi|224073304|ref|XP_002304070.1| predicted protein [Populus trichocarpa]
gi|222841502|gb|EEE79049.1| predicted protein [Populus trichocarpa]
Length = 325
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 97/192 (50%), Gaps = 14/192 (7%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
+IL++I++ V+ +IA+ + L +GAK+N LI G++WRL T LH+ +
Sbjct: 119 NILLAINILVYFAQIATRGK---------LLFWGAKVNSLIDKGQFWRLATSSVLHANIG 169
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+ ++C++L + GP + GP F +Y I+ + S+ P VG +G +F ++G
Sbjct: 170 HLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASSAMSYWFCRAPAVGASGAIFGLVG 229
Query: 348 AWLIYQFQNKDLI--AKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGF 405
+ ++ +++ +I K+ + + + L+ + + +D W HLG G+ +
Sbjct: 230 SLAVFVIRHRRMIGGGKEDLQNIAKVIFLNMMIGLLTKG---IDNWGHLGGLLGGVATSW 286
Query: 406 LTCPLVQLGDAS 417
P Q G S
Sbjct: 287 FVGPAWQYGPQS 298
>gi|420199483|ref|ZP_14705161.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
gi|394272265|gb|EJE16734.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
Length = 486
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IGFSLFMSN---INIMAHLGGFISGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + I+L IF
Sbjct: 329 -----------------ITLIGYYFKTHRSLFWAFLIVFLLIFIVLQIRIF 362
>gi|420172602|ref|ZP_14679101.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
gi|394241763|gb|EJD87172.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
Length = 486
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IVFSLFMSN---INIMAHLGGFIIGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + IIL IF
Sbjct: 329 -----------------ITLIGYYFKTQRSLFWSFLIVFLLIFIILQIRIF 362
>gi|449093160|ref|YP_007425651.1| hypothetical protein C663_0459 [Bacillus subtilis XF-1]
gi|449027075|gb|AGE62314.1| hypothetical protein C663_0459 [Bacillus subtilis XF-1]
Length = 208
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL+TP+ LH+G H+ + ++ F P + + G F L+Y GI GN+ +++
Sbjct: 56 GEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVT 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L +LI ++ S+ + + +SFI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFLTCP 409
+ AHL G+ + F P
Sbjct: 173 NMMAHLFGLCGGVSFLFFFVP 193
>gi|403070966|ref|ZP_10912298.1| hypothetical protein ONdio_15397 [Oceanobacillus sp. Ndiop]
Length = 253
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 24/200 (12%)
Query: 219 EETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPL-----LYGAKINELILVGEW 273
E N ++S+LV I++ ++ F LP+ +G N ++ GE+
Sbjct: 11 EFIQNYPVVSVLVIINLILWFVV----------NFLGLPIGREIYYWGVGSNFMVAAGEY 60
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP- 332
WRLVTP+FLH L H + ++L+ FGP + + G F + + GI N ++L P
Sbjct: 61 WRLVTPIFLHGDLMHALFNSFSLVLFGPALEQMLGKSKFLIAFFGAGIIANAATYLFAPL 120
Query: 333 -EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
+G +G +F + G + K LI S+ + I+S ++F+ +N ++ +
Sbjct: 121 NYTHLGASGAIFGLFGIYTFMVLFRKHLIDYSSSQMITTILIISLVMTFLRNN---INIY 177
Query: 392 AHLGAAFTGIIYGFLTCPLV 411
AH+ G I GF PLV
Sbjct: 178 AHI----FGFIGGFAIAPLV 193
>gi|418633195|ref|ZP_13195612.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|420190163|ref|ZP_14696107.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|420204465|ref|ZP_14710023.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
gi|374840014|gb|EHS03521.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|394259054|gb|EJE03924.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|394273475|gb|EJE17906.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
Length = 486
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IGFSLFMSN---INIMAHLGGFISGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + I+L IF
Sbjct: 329 -----------------ITLIGYYFKTHRSLFWAFLIVFLLIFIVLQIRIF 362
>gi|384174133|ref|YP_005555518.1| sporulation membrane protein and putative endopeptidase YdcA
[Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349593357|gb|AEP89544.1| sporulation membrane protein and putative endopeptidase YdcA
[Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 199
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL+TP+ LH+G H+ + ++ F P + + G +F L+Y GI GN+ +++
Sbjct: 56 GEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKASFLLVYAGSGIIGNIGTYVT 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L +LI ++ S+ + + +SFI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKLIITLLAFAVLMSFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NMMAHLFGLCGGFLLSFL 190
>gi|330718407|ref|ZP_08313007.1| membrane-associated serine protease [Leuconostoc fallax KCTC 3537]
Length = 229
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELI-LVGEWWRLVTPMFLHSGL 286
+IL+ + ++L E+ N++ G F + + GAK I E+WRL+TP+FLH+G+
Sbjct: 18 TILLFFTILIYLVEVVLSGANTQNGRFLVEM--GAKWGPYIQYQHEYWRLLTPIFLHAGM 75
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGTGPVFAI 345
H+ ++ L GP + +G + L+Y GG+ GN+ S+L +P +VG + +FA+
Sbjct: 76 MHIIMNMITLWFIGPLAERYFGSRKYLLLYLFGGVMGNILSYLFSPLSISVGASSSLFAL 135
Query: 346 IGAWLIYQFQNK 357
G LIY Q K
Sbjct: 136 FGGLLIYSIQFK 147
>gi|430756886|ref|YP_007210796.1| hypothetical protein A7A1_1394 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430021406|gb|AGA22012.1| Hypothetical protein YdcA [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 199
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL+TP+ LH+G H+ + ++ F P + + G F L+Y GI GN+ +++
Sbjct: 56 GEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVT 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L +LI ++ S+ + + +SFI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NMMAHLFGLCGGFLLSFL 190
>gi|238854484|ref|ZP_04644823.1| rhomboid protease GluP [Lactobacillus jensenii 269-3]
gi|313471846|ref|ZP_07812338.1| rhomboid family protein [Lactobacillus jensenii 1153]
gi|238832911|gb|EEQ25209.1| rhomboid protease GluP [Lactobacillus jensenii 269-3]
gi|313449012|gb|EEQ68240.2| rhomboid family protein [Lactobacillus jensenii 1153]
Length = 229
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 40/201 (19%)
Query: 261 GAKIN-ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA+ N +I++G+WWRL T FLH GL H+ ++C L G + G F +IY L
Sbjct: 46 GAQFNPAIIILGQWWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLA 105
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
G+ GNL + + V G + +F + GA +IA ++ R +
Sbjct: 106 GVGGNLMTLALGSDNAVSAGASTALFGLFGA----------MIALGIANRTHEGMAYLGR 155
Query: 378 LSFIIS--------NFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLI 429
SF+++ N +DTW H+G G++ GFL V LGD + +
Sbjct: 156 QSFVLAVINLLFDINIPQIDTWGHVG----GLLAGFLLT--VILGDQN-----------L 198
Query: 430 RQYANPCKSLIVFTI--FVII 448
R Y P K L F + FV+I
Sbjct: 199 RGYKLPIKILAGFALIGFVLI 219
>gi|420187246|ref|ZP_14693267.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
gi|394256225|gb|EJE01158.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
Length = 486
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 9/174 (5%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IVFSLFMSN---INIMAHLGGFISGVL 328
>gi|420184523|ref|ZP_14690632.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
gi|394257174|gb|EJE02096.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
Length = 486
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALFVL-IVFSLFMSN---INIMAHLGGFISGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + IIL IF
Sbjct: 329 -----------------ITLIGYYFKTQRSLFWSFLIVFLLIFIILQIRIF 362
>gi|418325502|ref|ZP_12936708.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
gi|365228104|gb|EHM69289.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
Length = 486
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALFVL-IVFSLFMSN---INIMAHLGGFISGVL------ 328
Query: 409 PLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + IIL IF
Sbjct: 329 -----------------ITLIGYYFKTQRSLFWSFLIVFLLIFIILQIRIF 362
>gi|319654680|ref|ZP_08008759.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
gi|317393596|gb|EFV74355.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
Length = 241
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
A +N I+ GE+WRL++P+ LHSG HV + ++L+ FGP + + G F L+Y G
Sbjct: 47 AGVNLYIVQGEYWRLLSPIILHSGFPHVLFNSFSLVLFGPVLERMLGKTRFILLYITAGA 106
Query: 322 SGNLTSFLHTPEPT--VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ N+ + L P VG +G +F + G + K+L++++ S+ + I+ ++
Sbjct: 107 AANIATLLLEPLTYIHVGASGAIFGLFGYFAAIIVFRKELLSRENSQIILTITIIGVIMT 166
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDAS---SRNSQEEGI 426
F+ N ++ AHL G++ GFL +G AS R S GI
Sbjct: 167 FLQPN---INVTAHL----FGLLAGFL------IGAASLAKGRTSSSSGI 203
>gi|389576264|ref|ZP_10166292.1| putative membrane protein [Eubacterium cellulosolvens 6]
gi|389311749|gb|EIM56682.1| putative membrane protein [Eubacterium cellulosolvens 6]
Length = 215
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 8/154 (5%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA L++ GEWWRL T MF+H G+ H+ + +LL G + + G F LIY LG
Sbjct: 49 FGAMYRPLLMEGEWWRLFTSMFVHFGMDHLVSNTISLLLIGVSLEQHCGHIRFLLIYILG 108
Query: 320 GISGNLTSFL---HTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL 374
G++GN S L +P+ V G +G VFAI+G ++ K +++ + I+
Sbjct: 109 GLAGNGFSLLIEGGSPQQAVSAGASGAVFAILGGYIALALIWKRTGVANINLVL---TIV 165
Query: 375 STALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
+ F S V+ AHLG G G L C
Sbjct: 166 AAGYMFYRSMGTGVNVEAHLGGLAAGFFLGLLLC 199
>gi|357452411|ref|XP_003596482.1| Rhomboid protease gluP [Medicago truncatula]
gi|355485530|gb|AES66733.1| Rhomboid protease gluP [Medicago truncatula]
Length = 327
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 212 DLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVG 271
D + R + +IL++ +V ++ ++A+ + L +GAK+N LI G
Sbjct: 105 DSKMSRKNPFNGRKWTNILLAANVLFYVAQLATQGK---------LLSWGAKVNSLIDKG 155
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+ WRLVT FLH+ + H+ ++C++L + GP V GP + IY I+ S+
Sbjct: 156 QVWRLVTSSFLHANIGHLMINCYSLNSVGPTVESFSGPRRYLAIYFASSIASAAMSYRFC 215
Query: 332 PEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
P VG +G +F ++G+ ++ ++KDL+ + +++ L+ +S+ G +D W
Sbjct: 216 KMPAVGASGAIFGLVGSVAVFVLRHKDLVGGGKKDLQHIAQVIALNLAIGLSSTG-IDNW 274
>gi|16077528|ref|NP_388342.1| hypothetical protein BSU04610 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221308284|ref|ZP_03590131.1| hypothetical protein Bsubs1_02613 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312606|ref|ZP_03594411.1| hypothetical protein BsubsN3_02589 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317529|ref|ZP_03598823.1| hypothetical protein BsubsJ_02548 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321805|ref|ZP_03603099.1| hypothetical protein BsubsS_02619 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321314135|ref|YP_004206422.1| hypothetical protein BSn5_13935 [Bacillus subtilis BSn5]
gi|402774706|ref|YP_006628650.1| protein YdcA [Bacillus subtilis QB928]
gi|452916522|ref|ZP_21965145.1| rhomboid family protein [Bacillus subtilis MB73/2]
gi|81345920|sp|P96617.1|YDCA_BACSU RecName: Full=Putative rhomboid protease YdcA
gi|1881271|dbj|BAA19298.1| ydcA [Bacillus subtilis]
gi|2632761|emb|CAB12268.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|320020409|gb|ADV95395.1| hypothetical protein BSn5_13935 [Bacillus subtilis BSn5]
gi|402479891|gb|AFQ56400.1| YdcA [Bacillus subtilis QB928]
gi|452114662|gb|EME05061.1| rhomboid family protein [Bacillus subtilis MB73/2]
Length = 199
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL+TP+ LH+G H+ + ++ F P + + G F L+Y GI GN+ +++
Sbjct: 56 GEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVT 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L +LI ++ S+ + + +SFI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NMMAHLFGLCGGFLLSFL 190
>gi|418621400|ref|ZP_13184176.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
gi|374829344|gb|EHR93148.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
Length = 394
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 130/288 (45%), Gaps = 52/288 (18%)
Query: 174 NLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQR-TEETSNLYLISILVS 232
N + ++ I+ KR Y L R++ ++ V D +QR T T L LI+I++
Sbjct: 120 NFLLLKMLINNEDKRTY---LHYKRKVLTQNLV-----DKHMQRFTPITYTLILINIVIW 171
Query: 233 IDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALS 292
+ + ++L + F L L G ++ ++ GEW+RL++ MFLH H+ ++
Sbjct: 172 LCMILYL---------NRFSDVKL-LEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMN 221
Query: 293 CWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLI 351
+L FG V G + +IY + G+ GN S +T +VG +G +F +IG+ +
Sbjct: 222 MLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFV 281
Query: 352 YQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
+ +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 282 IMYLSKNFNKKMIGQLLIALVVL-IVFSLFMSN---INIMAHLGGFISGVL--------- 328
Query: 412 QLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTIFVIILGSFIF 454
ITLI Y +S LIVF + IIL IF
Sbjct: 329 --------------ITLIGYYFKTQRSLFWSFLIVFLLIFIILQIRIF 362
>gi|428277913|ref|YP_005559648.1| hypothetical protein BSNT_00791 [Bacillus subtilis subsp. natto
BEST195]
gi|291482870|dbj|BAI83945.1| hypothetical protein BSNT_00791 [Bacillus subtilis subsp. natto
BEST195]
Length = 199
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL+TP+ LH+G H+ + ++ F P + + G F L+Y GI GN+ +++
Sbjct: 56 GEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKAHFLLVYAGSGIIGNIGTYVT 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L +LI ++ S+ + + +SFI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NMMAHLFGLCGGFLLSFL 190
>gi|418614697|ref|ZP_13177659.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
gi|374819233|gb|EHR83361.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
Length = 486
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 9/174 (5%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ ++L I R S+ + G ++ ++ GEW+RL++ MFLH H+
Sbjct: 163 LILINIVIWLCMILYLNRFSDVKLLEV----GGLVHFNVVHGEWYRLISSMFLHFNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
+ + +K+ K + + + +L S +SN ++ AHLG +G++
Sbjct: 279 IFVIMYLSKNFNKKMIGQLLIALVVL-IGFSLFMSN---INIMAHLGGFISGVL 328
>gi|420216660|ref|ZP_14721861.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
gi|394291537|gb|EJE35341.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
Length = 326
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 33/190 (17%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-L 329
GEW+RL++ MFLH H+ ++ +L FG V G + +IY + G+ GN S
Sbjct: 40 GEWYRLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSF 99
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
+T +VG +G +F +IG+ + + +K+ K + + + +L S +SN ++
Sbjct: 100 NTTTISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVVL-IVFSLFMSN---IN 155
Query: 390 TWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKS-----LIVFTI 444
AHLG +G++ ITLI Y +S LIVF +
Sbjct: 156 IMAHLGGFISGVL-----------------------ITLIGYYFKTQRSLFWSFLIVFLL 192
Query: 445 FVIILGSFIF 454
IIL IF
Sbjct: 193 IFIILQIRIF 202
>gi|182418411|ref|ZP_02949705.1| rhomboid family protein [Clostridium butyricum 5521]
gi|237666444|ref|ZP_04526429.1| rhomboid family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377793|gb|EDT75337.1| rhomboid family protein [Clostridium butyricum 5521]
gi|237657643|gb|EEP55198.1| rhomboid family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 354
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK + LI GE WRL++ FLH H+A + + L GPQ+ + YG + IY +
Sbjct: 200 GAKYSPLIYDGEIWRLISCAFLHGSFLHIACNMYMLYIIGPQIERIYGKVKYIFIYLISC 259
Query: 321 ISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
I+ + S + P+ +VG +G +F ++GA L + + I ++ + + + ++ +
Sbjct: 260 ITSSTLSLIINPDSISVGASGGIFGLMGALLAFALIERKNIDREYTVGLIKTIGINLVIG 319
Query: 380 FIISNFGPVDTWAH 393
II N +D AH
Sbjct: 320 LIIIN---IDNAAH 330
>gi|308068481|ref|YP_003870086.1| hypothetical protein PPE_01711 [Paenibacillus polymyxa E681]
gi|305857760|gb|ADM69548.1| Uncharacterized membrane protein [Paenibacillus polymyxa E681]
Length = 207
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGA INE + WR V+ MFLH+G H+ + +A+L F P + + G F + L+Y +
Sbjct: 48 YGALINEAPFTDQLWRYVSAMFLHAGFDHLLFNSFAILVFAPPLERLLGSFRYVLLYLVT 107
Query: 320 GISGNLTSFLHTPEPT-----VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL 374
GI GN+ S H T VG +G ++ I GA+L + L+ + ++
Sbjct: 108 GIVGNILSIAHYNMMTETTVSVGASGAIYGIYGAFLYVALFQRSLMDDASRKTLYTLLGF 167
Query: 375 STALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRN 420
SF ++N ++ AH G +G FL +++L R+
Sbjct: 168 GILFSFAVAN---INWTAHFGGLLSGF---FLYGLMIRLTGQRKRH 207
>gi|386757063|ref|YP_006230279.1| rhomboid family protein [Bacillus sp. JS]
gi|384930345|gb|AFI27023.1| Rhomboid family protein [Bacillus sp. JS]
Length = 199
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL+TP+ LH+G H+ + ++ F P + + G F L+Y GI GN+ +++
Sbjct: 56 GEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVT 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L +LI ++ S+ + + +SFI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMILILLAFAVLMSFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NMMAHLFGLCGGFLLSFL 190
>gi|398307565|ref|ZP_10511151.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus
vallismortis DV1-F-3]
Length = 199
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL+TP+ LH+G H+ + ++ F P + + G F L+Y GI GN+ +++
Sbjct: 56 GEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVA 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L K+LI ++ S+ + + +S I SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLYMVVFRKELIGREHSKMILTLLAFAVLMSLINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NIMAHLFGLCGGFLLSFL 190
>gi|15222058|ref|NP_172735.1| RHOMBOID-like protein 6 [Arabidopsis thaliana]
gi|145323878|ref|NP_001077528.1| RHOMBOID-like protein 6 [Arabidopsis thaliana]
gi|334182523|ref|NP_001184975.1| RHOMBOID-like protein 6 [Arabidopsis thaliana]
gi|17529034|gb|AAL38727.1| putative membrane protein [Arabidopsis thaliana]
gi|20259083|gb|AAM14257.1| putative membrane protein [Arabidopsis thaliana]
gi|332190800|gb|AEE28921.1| RHOMBOID-like protein 6 [Arabidopsis thaliana]
gi|332190801|gb|AEE28922.1| RHOMBOID-like protein 6 [Arabidopsis thaliana]
gi|332190802|gb|AEE28923.1| RHOMBOID-like protein 6 [Arabidopsis thaliana]
Length = 307
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 4/179 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
E WRL+T M+LH+G+ H+ ++ + ++ FG ++ + +G LIY + G G++ S L
Sbjct: 96 EKWRLITAMWLHAGIIHLVMNMFDVIIFGIRLEQQFGFIRIGLIYLISGFGGSILSALFL 155
Query: 332 PEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
+ +VG +G + ++GA L N + + + + A++ I VD
Sbjct: 156 QKSISVGASGALLGLMGAMLSELLTNWTIYKSKLCALL--SFLFIIAINLAIGLLPWVDN 213
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIIL 449
+AH+G TG GF+ Q G RNS + G +Y NPC+ ++ F V+++
Sbjct: 214 FAHIGGLLTGFCLGFILLMQPQSGWEEFRNSSQYGARARSKY-NPCQYVLFFVAAVLVV 271
>gi|356566513|ref|XP_003551475.1| PREDICTED: inactive rhomboid protein 1-like [Glycine max]
Length = 385
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%)
Query: 265 NELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN 324
N+++ + WRL+T M+LH G+FH+ + + LL G Q+ K +G L++ + G G+
Sbjct: 116 NKVVHRHQGWRLITCMWLHGGVFHLVANMFGLLVVGIQLEKEFGFVLIGLLFVISGFGGS 175
Query: 325 LTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIS 383
L S L E +VG +G +F ++G L N L K + + A++ +
Sbjct: 176 LLSALFIGEKVSVGASGALFGLLGGMLSELLTNWSLYEKKLGALF--TFVFVIAINLAVG 233
Query: 384 NFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNS-QEEGITLIRQYANP--CKSLI 440
VD +AH+G +G + GF+ Q G RN+ Q TLI+ N C S I
Sbjct: 234 VLPHVDNFAHIGGFLSGFLLGFVFLIRPQFGWIKQRNAPQPYSPTLIKPKFNKYQCISWI 293
Query: 441 VFTIFVII 448
+ I +I+
Sbjct: 294 LALILLIV 301
>gi|9502383|gb|AAF88090.1|AC025417_18 T12C24.28 [Arabidopsis thaliana]
Length = 302
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 4/179 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
E WRL+T M+LH+G+ H+ ++ + ++ FG ++ + +G LIY + G G++ S L
Sbjct: 91 EKWRLITAMWLHAGIIHLVMNMFDVIIFGIRLEQQFGFIRIGLIYLISGFGGSILSALFL 150
Query: 332 PEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
+ +VG +G + ++GA L N + + + + A++ I VD
Sbjct: 151 QKSISVGASGALLGLMGAMLSELLTNWTIYKSKLCALL--SFLFIIAINLAIGLLPWVDN 208
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIIL 449
+AH+G TG GF+ Q G RNS + G +Y NPC+ ++ F V+++
Sbjct: 209 FAHIGGLLTGFCLGFILLMQPQSGWEEFRNSSQYGARARSKY-NPCQYVLFFVAAVLVV 266
>gi|156741085|ref|YP_001431214.1| rhomboid family protein [Roseiflexus castenholzii DSM 13941]
gi|156232413|gb|ABU57196.1| Rhomboid family protein [Roseiflexus castenholzii DSM 13941]
Length = 281
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 258 LLYGAKINELILVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIY 316
L++GAK N I VG +++R +T MFLH GL H+ + +AL + G + + +G F IY
Sbjct: 86 LIWGAKDNAAIFVGGQYYRFLTAMFLHGGLAHLFFNSFALYSLGFETERLFGAQRFLAIY 145
Query: 317 TLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
L G+ G + S+ P P+VG +G +F +IGA + + + ++ ++ + I T
Sbjct: 146 MLAGLGGGVASYALNPNPSVGASGAIFGLIGALIAFYLVARRVLG-GIARQQLGSLIFIT 204
Query: 377 ALSFIISNFGP-VDTWAHL 394
++ + P +D AH+
Sbjct: 205 LINLALGFTTPYIDNNAHI 223
>gi|314936330|ref|ZP_07843677.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
gi|313654949|gb|EFS18694.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
Length = 485
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 15/181 (8%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++I+V ++L+ I + F L L G ++ ++ GEW+RL+T MFLH H+
Sbjct: 162 LIAINVLIWLY---MKIYLNHFSDIKL-LDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V GP+ IY + G+ GN S + +VG +G +F +IGA
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFASLSFNISTISVGASGAIFGLIGA 277
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPVDTWAHLGAAFTGIIYGFLT 407
L + ++K +++M + ++ + +S F ++ AHLG G I GFL
Sbjct: 278 ILTMMY-----LSKTFNKKMIIQLLVVVLILIFVSLFMSNINLMAHLG----GFIGGFLI 328
Query: 408 C 408
Sbjct: 329 T 329
>gi|390961805|ref|YP_006425639.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
gi|390520113|gb|AFL95845.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
Length = 203
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 12/138 (8%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
G WW+LVT MF+H G+ H+ + + LL G Q+ GP ++Y + G++GNL +
Sbjct: 57 GWWWQLVTAMFVHVGILHIGFNMYFLLMMGRQLEGIIGPKRLVMVYLVSGLAGNLLTLFL 116
Query: 331 TPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP- 387
P +V G +G +F I+G +I I V M Q A+++ + F+I++ P
Sbjct: 117 LPANSVSAGASGALFGIVGTLII--------ITGVVGGNM-QGALINAFVLFLINSIMPS 167
Query: 388 VDTWAHLGAAFTGIIYGF 405
V+ +AHLG G+ G+
Sbjct: 168 VNVYAHLGGLLVGMAIGY 185
>gi|393788564|ref|ZP_10376691.1| hypothetical protein HMPREF1068_02971 [Bacteroides nordii
CL02T12C05]
gi|392654244|gb|EIY47892.1| hypothetical protein HMPREF1068_02971 [Bacteroides nordii
CL02T12C05]
Length = 467
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 14/184 (7%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ I+V VF+ S + E L L +GA L L G WWR +T F+H G+ H
Sbjct: 40 ILLGINVLVFILMTLSGVNLFEPKTLEL-LQWGADFGPLTLTGSWWRTLTCNFVHIGIVH 98
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS-FLHTPEPTVGGTGPVFAIIG 347
+ ++ +AL+ G + +G F Y L G+ ++S F H + G +G +F + G
Sbjct: 99 ILMNMYALVYIGVLLEPMFGTRRMFAAYLLTGLCSAVSSLFWHAETISAGASGAIFGLYG 158
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN--FG---PVDTWAHLGAAFTGII 402
+L + + E+ + A+LS+ L F+ N +G +D AH+G +G I
Sbjct: 159 IFLAF-------LCFHHIEKAQRNALLSSILIFVGYNLIYGLKEGIDNAAHIGGLISGFI 211
Query: 403 YGFL 406
GF+
Sbjct: 212 LGFV 215
>gi|418619999|ref|ZP_13182810.1| peptidase, S54 family [Staphylococcus hominis VCU122]
gi|374823562|gb|EHR87557.1| peptidase, S54 family [Staphylococcus hominis VCU122]
Length = 485
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 15/181 (8%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++I+V ++L+ I + F L L G ++ ++ GEW+RL+T MFLH H+
Sbjct: 162 LIAINVLIWLY---MKIYLNHFSDIKL-LDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V GP+ IY + G+ GN S + +VG +G +F +IGA
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFASLSFNISTISVGASGAIFGLIGA 277
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPVDTWAHLGAAFTGIIYGFLT 407
L + ++K +++M + ++ + +S F ++ AHLG G I GFL
Sbjct: 278 ILTMMY-----LSKTFNKKMIIQLLVVVLILIFVSLFMSNINLMAHLG----GFIGGFLI 328
Query: 408 C 408
Sbjct: 329 T 329
>gi|407797237|ref|ZP_11144183.1| S54 family peptidase [Salimicrobium sp. MJ3]
gi|407018431|gb|EKE31157.1| S54 family peptidase [Salimicrobium sp. MJ3]
Length = 204
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G N L+ GE+WRL+TP+FLH+GL H + + L+ FGP + + G F + Y L G
Sbjct: 47 GVGNNFLVSQGEYWRLLTPIFLHAGLSHTLFNSFTLVLFGPALERMLGKVKFIIAYLLAG 106
Query: 321 ISGNLTSFLHTP---EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
I+GN+ ++ P +G +G +F + G + F KDL+ + S+ + +L
Sbjct: 107 IAGNIGTYAADPGAFHSHLGASGAIFGLFGIYAYMLFARKDLLDQASSQIIGVFIVLGLI 166
Query: 378 LSFIISNFGPVDTWAHL 394
++F+ N ++ HL
Sbjct: 167 MTFLQPN---INVLGHL 180
>gi|288554843|ref|YP_003426778.1| hypothetical protein BpOF4_09150 [Bacillus pseudofirmus OF4]
gi|288546003|gb|ADC49886.1| hypothetical protein BpOF4_09150 [Bacillus pseudofirmus OF4]
Length = 246
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G N + GEWWRL+TP+F+H + HV + ++L+ FGP + + G F F + Y G
Sbjct: 45 GIGYNLAVANGEWWRLITPIFMHLTIGHVVFNSFSLVIFGPALEQMLGKFRFIIFYLGTG 104
Query: 321 ISGNLTSF----LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
+ N+ ++ L P P +G +G +F + G ++ KDLI + S+ + I+
Sbjct: 105 VIANIATYYLGGLSYP-PHLGASGAIFGLFGMFVYLVLFRKDLIDQANSQLVMTILIIGL 163
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQE 423
++F+ SN ++ AHL G++ G PL G Q
Sbjct: 164 VMTFVNSN---INVLAHL----FGLLGGAALAPLFLTGVKPYHMYQH 203
>gi|228476169|ref|ZP_04060877.1| rhomboid family protein [Staphylococcus hominis SK119]
gi|228269992|gb|EEK11472.1| rhomboid family protein [Staphylococcus hominis SK119]
Length = 485
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 15/181 (8%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++I+V ++L+ I + F L L G ++ ++ GEW+RL+T MFLH H+
Sbjct: 162 LIAINVLIWLY---MKIYLNHFSDIKL-LDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V GP+ IY + G+ GN S + +VG +G +F +IGA
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFASLSFNISTISVGASGAIFGLIGA 277
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPVDTWAHLGAAFTGIIYGFLT 407
L + ++K +++M + ++ + +S F ++ AHLG G I GFL
Sbjct: 278 ILTMMY-----LSKTFNKKMIIQLLVVVLILIFVSLFMSNINLMAHLG----GFIGGFLI 328
Query: 408 C 408
Sbjct: 329 T 329
>gi|339480868|ref|ZP_08656527.1| membrane-associated serine protease [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 230
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 8/179 (4%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILV-GEWWRLVTPMFLHSGL 286
+IL+++ + VF+ E+ ++ +F + + GAK I ++WRL+TP+FLH+G
Sbjct: 18 TILLTVTIVVFVIELVVSGGTTDNSYFLVQV--GAKWGPYIKDDSQYWRLITPIFLHAGF 75
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAI 345
H+ + L GP ++G F +Y GISGN+ S+L +P +VG + +F +
Sbjct: 76 MHIVTNMLTLWFIGPIAEDAFGSRKFLGLYFFSGISGNIFSYLFSPNTISVGASTALFGL 135
Query: 346 IGAWLIYQFQNK-DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
G +I+ +Q + D + + M +L+ SF +N +D W H G G+++
Sbjct: 136 FGGLMIFAYQFRHDPNVRALGSMMGLFILLTLLSSFSATN---IDLWGHFGGFIGGVMF 191
>gi|157363715|ref|YP_001470482.1| rhomboid family protein [Thermotoga lettingae TMO]
gi|157314319|gb|ABV33418.1| Rhomboid family protein [Thermotoga lettingae TMO]
Length = 228
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 18/201 (8%)
Query: 216 QRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWR 275
RT + +++ ++++ V I + +F S R+ + F + +GA+ L+ GEW+R
Sbjct: 1 MRTLKITHI-ILAVNVLIAIVMFFAGNLSAFRSQTYLF----IRFGAQYGPLVSDGEWYR 55
Query: 276 LVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTPEP 334
L+T +F+H GL H+ + +AL FG V YGP F Y G+ GN+ T +
Sbjct: 56 LITAIFVHGGLLHLLFNSYALFYFGTIVESVYGPEKFIFSYLATGVVGNIATHLFYYRAI 115
Query: 335 TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ---KAILSTALSFIISNFGP---V 388
+VG +G +F ++G F+ +D M Q A+L L II F P +
Sbjct: 116 SVGASGSIFGLVGILFSLGFR------RDTPFFMKQFTGYALLPMILFNIIYGFIPGSGI 169
Query: 389 DTWAHLGAAFTGIIYGFLTCP 409
+ AH+G G++ G+L P
Sbjct: 170 NNAAHVGGFALGMLLGYLLSP 190
>gi|260665468|ref|ZP_05866315.1| membrane-associated serine protease [Lactobacillus jensenii
SJ-7A-US]
gi|260560736|gb|EEX26713.1| membrane-associated serine protease [Lactobacillus jensenii
SJ-7A-US]
Length = 215
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 40/201 (19%)
Query: 261 GAKIN-ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA+ N +I++G+WWRL T FLH GL H+ ++C L G + G F +IY L
Sbjct: 32 GAQFNPAIIILGQWWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLA 91
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
G+ GNL + + V G + +F + GA +IA ++ R +
Sbjct: 92 GVGGNLMTLALGSDNAVSAGASTALFGLFGA----------MIALGIANRTHEGMAYLGR 141
Query: 378 LSFIIS--------NFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLI 429
SF+++ N +DTW H+G G++ GFL V LGD + +
Sbjct: 142 QSFVLAVINLLFDINIPQIDTWGHVG----GLLAGFLLT--VILGDQN-----------L 184
Query: 430 RQYANPCKSLIVFTI--FVII 448
R Y P K L F + FV+I
Sbjct: 185 RGYKLPIKILAGFALIGFVLI 205
>gi|260583535|ref|ZP_05851283.1| rhomboid protease GluP [Granulicatella elegans ATCC 700633]
gi|260158161|gb|EEW93229.1| rhomboid protease GluP [Granulicatella elegans ATCC 700633]
Length = 235
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 260 YGAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
YGA+ N I++ E+WR +TP+FLH GL H A++ L FG Q+ G F +IY L
Sbjct: 49 YGARANAFIIIFHEYWRFITPIFLHIGLEHFAMNSLFLYFFGNQLESIVGHGRFLVIYLL 108
Query: 319 GGISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIA-KDVSERMFQKAILST 376
GI GNL SF + + G + +F + G L +++ + A K++ + +++
Sbjct: 109 SGIMGNLASFAFNAQHISAGASTSLFGLFGLMLYLSTRHRYIYAFKELGMQYMALLVMNL 168
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL-GDASSR 419
S S +D W HLG G++ G++ +V GD ++
Sbjct: 169 ITSLFSS---TIDLWGHLG----GLVGGYVIASVVSFRGDRVTK 205
>gi|295397321|ref|ZP_06807413.1| rhomboid family protein [Aerococcus viridans ATCC 11563]
gi|294974395|gb|EFG50130.1| rhomboid family protein [Aerococcus viridans ATCC 11563]
Length = 223
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 11/171 (6%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
LL+GAK N LI GE+WRL+TPMFLH G+ H+ ++ L G V G + + +IY
Sbjct: 36 LLFGAKFNPLIAAGEYWRLITPMFLHIGIVHLLINSITLYYLGSMVENIAGHWRYLVIYL 95
Query: 318 LGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-T 376
G+ GNL S+ + + G + +F + +L K+L ++ + L+
Sbjct: 96 ASGLMGNLFSYQFSENISAGASTALFGLFAVFL----ALKNLFPRNRHIQSIGSQYLTLV 151
Query: 377 ALSFIISNFGP-VDTWAHLGAAFTGIIYGFL-TCPLVQLGDASSRNSQEEG 425
++ + G +D W H+G G++ GFL T L++ R +Q G
Sbjct: 152 GINLVFGMMGSGIDIWGHVG----GLVGGFLVTMALIRGEGPDQRLTQRIG 198
>gi|70726368|ref|YP_253282.1| hypothetical protein SH1367 [Staphylococcus haemolyticus JCSC1435]
gi|68447092|dbj|BAE04676.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 485
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 38/223 (17%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I+V ++L I S+ L G ++ ++ GEW+RL+T MFLH H+
Sbjct: 162 LIIINVLIWLIMILYLNHFSDVKLLDL----GGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF---LHTPEPTVGGTGPVFAII 346
++ +L FG V GP IY + G+ GN S LHT +VG +G +F +I
Sbjct: 218 LMNMLSLFIFGKIVESIVGPLRMLGIYVISGLLGNFISLSFNLHT--VSVGASGAIFGLI 275
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
G+ F +K K + + M ++ LS +SN ++ AHLG G++
Sbjct: 276 GSIFAMMFVSKTYSKKTIGQ-MLIALLVLIVLSLFMSN---INIMAHLGGFIGGVL---- 327
Query: 407 TCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIIL 449
ITLI Y ++L F IF+IIL
Sbjct: 328 -------------------ITLIGYYFTHNRNL--FWIFLIIL 349
>gi|425737376|ref|ZP_18855649.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
gi|425482724|gb|EKU49880.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
Length = 484
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 8/172 (4%)
Query: 237 VFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWAL 296
V ++ + + + ++EF L L GA + ++ GEW RL+T MFLH H+ + +L
Sbjct: 167 VIIWALINILHHNEFTDLKLIDL-GALAHFNVVHGEWHRLITSMFLHLNFEHILFNMLSL 225
Query: 297 LTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQ 355
FG + G + F +Y L GI GNL + +P+ ++G +G +F +IG+ +
Sbjct: 226 FIFGKLLESILGSWRMFGVYMLSGIIGNLVTLAFSPDTFSLGASGAIFGLIGSLIACM-- 283
Query: 356 NKDLIAKDVSERMFQKAILSTALSFIISNF-GPVDTWAHLGAAFTGIIYGFL 406
+I++ +R + +L+ + +IS F ++ AH+G G++ FL
Sbjct: 284 ---IISQKFDQRTIGQLLLALLIMVVISLFISNINVLAHIGGLLGGVLVTFL 332
>gi|239637639|ref|ZP_04678611.1| rhomboid family protein [Staphylococcus warneri L37603]
gi|239596857|gb|EEQ79382.1| rhomboid family protein [Staphylococcus warneri L37603]
Length = 484
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ +VA++L I R S+ + G ++ ++ GEW+RLVT MFLH H
Sbjct: 162 ILIISNVALWLCMILYFNRFSDIKLLDV----GGLVHFNVVHGEWYRLVTSMFLHYNFEH 217
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIG 347
+ ++ +L FG V G + IY GI GN S +T +VG +G +F +IG
Sbjct: 218 ILMNMLSLYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFNTTTISVGASGAIFGLIG 277
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
+ + +K K + + + IL LS +SN ++ AHLG G++
Sbjct: 278 SIFAILYLSKTFDKKVIGQLLIALVIL-IGLSLFMSN---INVMAHLGGFVGGLL 328
>gi|260222883|emb|CBA32895.1| hypothetical protein Csp_B16320 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 364
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 4/178 (2%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA G+WWRL++ MF+H G++H+A++ WAL G + G + F +Y
Sbjct: 59 WGANFAPATQDGQWWRLLSAMFIHFGVWHLAVNMWALWDIGRLLETLLGRWRFAALYLGA 118
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
G+ GNL S + V G +G VF + GA L++ + + + +F A+ +
Sbjct: 119 GVCGNLLSLVVQGNRAVSGGASGAVFGLYGALLVFLWVERKQVEAGEFRWLFGGALGFSV 178
Query: 378 LSFIISNFGP-VDTWAHLGAAFTGIIY-GFLTCPLVQLGDASSRNSQEEGITLIRQYA 433
L + F P +D AH G G+++ GFL P + + LI A
Sbjct: 179 LMLALGWFMPGIDNAAHGGGLVAGMLWAGFLLQPWTAFSPVAGVRPWLSAVVLISSIA 236
>gi|294614223|ref|ZP_06694142.1| integral membrane protein [Enterococcus faecium E1636]
gi|291592882|gb|EFF24472.1| integral membrane protein [Enterococcus faecium E1636]
Length = 232
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
+P G L+ EWWRLVTP+F+H GL H ++ L G Q+ YG + FFLI
Sbjct: 41 IPYYAGMYGPYLVHFNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLI 100
Query: 316 YTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y GI GN SF + G + +F + GA I F K +A R F +
Sbjct: 101 YMFSGIMGNTASFAFNEANVLSGGASTSIFGLFGALFILGFHFKHNLAIQQLVRHF---L 157
Query: 374 LSTALSFIISNFG----PVDTWAH 393
L L+F+ FG VD W H
Sbjct: 158 LFIVLTFV---FGLLDTSVDVWGH 178
>gi|94312789|ref|YP_585998.1| intramembrane serine protease [Cupriavidus metallidurans CH34]
gi|93356641|gb|ABF10729.1| putative intramembrane serine protease [Cupriavidus metallidurans
CH34]
Length = 554
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 11/172 (6%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G + L G+WWRL+T FLH L H+A + L G V + +G +F LIY
Sbjct: 228 WGGNLGALTQDGQWWRLLTATFLHGSLKHLAANMVVLYLLGTHVERFFGTRSFLLIYVGA 287
Query: 320 GISGNLTS--FLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL--- 374
G+ G+ S F +VG +G VF I GA L+ ++ + + + R+ A++
Sbjct: 288 GLLGSALSLYFAAQASVSVGASGAVFGIGGALLVAALLHRRELPQSIRNRLVSDAVIMIG 347
Query: 375 -STALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEG 425
S A F+ + VD AH+G G + C V+L + R G
Sbjct: 348 YSLAQGFLSTR---VDNAAHVGGLIGGALLAL--CLPVRLSPETYRKKLRRG 394
>gi|317127070|ref|YP_004093352.1| rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
gi|315472018|gb|ADU28621.1| Rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
Length = 249
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 10/177 (5%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 285
L+++L++I++ ++ + P + L YG N I +GE WR+VTP+FLH
Sbjct: 17 LVTVLIAINLVIYFWMSMYPKLGGQ-----LIEAYGVGSNYHIAMGELWRIVTPIFLHGS 71
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGPVF 343
+ H+ +C++L FGP + K G + Y GI N+ +F+ P +G +G ++
Sbjct: 72 IMHLLFNCFSLFLFGPALEKMLGKGKLLIAYFATGILANIATFILAPLFYFHLGASGAIY 131
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTG 400
+ G +L KDLI ++ + I+ ++FI N G ++ +AH+ +G
Sbjct: 132 GLFGIYLYMVLVRKDLIDPRNAQLIITILIIGVIMTFI--NPG-INRYAHIFGLISG 185
>gi|227544150|ref|ZP_03974199.1| S54 family peptidase [Lactobacillus reuteri CF48-3A]
gi|338202576|ref|YP_004648721.1| rhomboid family integral membrane protein [Lactobacillus reuteri
SD2112]
gi|154705524|gb|ABS84188.1| rhomboid family protein [Lactobacillus reuteri]
gi|227185866|gb|EEI65937.1| S54 family peptidase [Lactobacillus reuteri CF48-3A]
gi|336447816|gb|AEI56431.1| rhomboid family integral membrane protein [Lactobacillus reuteri
SD2112]
Length = 219
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA+ LI GEWWRLV+P+FLH GL H+ ++ LL G + + +G + +IY +
Sbjct: 42 GARSTPLIREGEWWRLVSPVFLHVGLSHLVVNSVTLLYIGRYIEEFFGHWRMVIIYFVSA 101
Query: 321 ISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQF-QNKDLIAKDVSERMFQKAILSTAL 378
GNLTS + P + G + +F + GA+L+ + ++I + +S I++ +
Sbjct: 102 FFGNLTSAVFMPSTVSAGASTAIFGLFGAFLMLGVCFHHNVIVRVLSRTFLLFVIINIVM 161
Query: 379 SFIISNFGPVDTWAHLGAAFTGIIYGFLT-CPLVQLGDASSR 419
F +S VD H+G F G F+ P++ D R
Sbjct: 162 DFFLSG---VDLVGHIGGLFGGFFIAFIVGAPMLGTVDYLKR 200
>gi|302421084|ref|XP_003008372.1| rhomboid family membrane protein [Verticillium albo-atrum VaMs.102]
gi|261351518|gb|EEY13946.1| rhomboid family membrane protein [Verticillium albo-atrum VaMs.102]
Length = 524
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 10/145 (6%)
Query: 265 NELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN 324
NE +W+R +TP+FLH+GL H+ ++ +T G ++ + GP FFL+Y GI GN
Sbjct: 263 NEKGEPNQWFRFITPIFLHAGLIHIGVNMLLQMTIGKEMEMAIGPVRFFLVYFSAGIFGN 322
Query: 325 L--TSFLHTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ ++ T E + G +G +F II L Y ++++ KD+ MF +L +
Sbjct: 323 VMGANYAGTGEASTGASGALFGIIALTALDLAYSWKDRRHPVKDL---MF--VLLDVVIC 377
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYG 404
F++ +D +AH+G G+ G
Sbjct: 378 FVLGLLPGLDNFAHIGGFLMGLCLG 402
>gi|183598259|ref|ZP_02959752.1| hypothetical protein PROSTU_01644 [Providencia stuartii ATCC 25827]
gi|386744560|ref|YP_006217739.1| hypothetical protein S70_16165 [Providencia stuartii MRSN 2154]
gi|1168254|sp|P46116.1|AARA_PROST RecName: Full=Rhomboid protease AarA; AltName: Full=Intramembrane
serine protease
gi|453686|gb|AAA61597.1| 2'-N-acetyltransferase [Providencia stuartii]
gi|188020429|gb|EDU58469.1| rhomboid protease AarA [Providencia stuartii ATCC 25827]
gi|384481253|gb|AFH95048.1| hypothetical protein S70_16165 [Providencia stuartii MRSN 2154]
Length = 281
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 28/195 (14%)
Query: 230 LVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
LV +++AV+ ++I ASP+ + E S +L+GA I +L L G+WWR M LHS
Sbjct: 27 LVLLNIAVYFYQIVFASPLDSRE----SNLILFGANIYQLSLTGDWWRYPISMMLHSNGT 82
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTPEPT----------- 335
H+A +C AL G ++YG F IY + GI L +++ E +
Sbjct: 83 HLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYYEISNSDLWTDSTVY 142
Query: 336 ----VGGTGPVFAIIGAWLIYQFQ------NKDLIAKDVSERMFQKAILSTALSFIISNF 385
VG +G + I A +IY + N + + + I AL+ I
Sbjct: 143 ITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYNLIAMIALTLINGLQ 202
Query: 386 GPVDTWAHLGAAFTG 400
VD AH+G A G
Sbjct: 203 SGVDNAAHIGGAIIG 217
>gi|381208752|ref|ZP_09915823.1| hypothetical protein LGrbi_02305 [Lentibacillus sp. Grbi]
Length = 252
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 15/157 (9%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G IN I G++WRL+T +FLH+GL HV + +AL+ FGP + + G F Y
Sbjct: 47 WGMGINFAISQGQYWRLITSIFLHAGLMHVLFNSFALVLFGPALEQMLGKVKFITAYLGA 106
Query: 320 GISGNLTSFLHTPE--PTVGGTGPVFAIIGAWLIYQFQ---NKDLIAKDVSERMFQKAIL 374
G+ GNL +FL P VG +G ++ + G IY F K LI S+ + ++
Sbjct: 107 GLIGNLATFLLGPALYSHVGASGAIYGLFG---IYAFMVAFRKHLIDPSSSQIITIILVI 163
Query: 375 STALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
++F+ S ++ +AH+ G I GF PL+
Sbjct: 164 GLIMTFVRSG---INIYAHV----FGFIGGFALAPLI 193
>gi|330818784|ref|XP_003291518.1| hypothetical protein DICPUDRAFT_49886 [Dictyostelium purpureum]
gi|325078290|gb|EGC31949.1| hypothetical protein DICPUDRAFT_49886 [Dictyostelium purpureum]
Length = 202
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 4/144 (2%)
Query: 268 ILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327
+L GEWWR +P+FLH G+FH ++ L G Q+ ++YG IY L G+ GNL S
Sbjct: 1 MLQGEWWRFFSPIFLHVGIFHYLMNMATQLRVGMQLERAYGGHRIVPIYLLCGVMGNLCS 60
Query: 328 FLHTPEPT-VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
+ P+ VG +G +F +G L +N ++A+ + SF + F
Sbjct: 61 AIMLPQSVQVGASGAIFGFLGVLLADLIRNWGVLARPYLNC--GTLAFTIITSFAVGLFL 118
Query: 387 P-VDTWAHLGAAFTGIIYGFLTCP 409
P VD +AH G GI+ G++ P
Sbjct: 119 PGVDNYAHFGGFIMGILTGWIFLP 142
>gi|374323241|ref|YP_005076370.1| rhomboid family protein [Paenibacillus terrae HPL-003]
gi|357202250|gb|AET60147.1| rhomboid family protein [Paenibacillus terrae HPL-003]
Length = 207
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 12/172 (6%)
Query: 255 SLPLL-YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFF 313
SL L+ YGA INE + WR V+ MFLH+G H+ + +A+L F P + + G F +
Sbjct: 42 SLTLIRYGALINEEPFTAQLWRYVSAMFLHAGFDHLFFNSFAILVFAPPLERLLGSFRYA 101
Query: 314 LIYTLGGISGNLTSFLH---TPEPT--VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERM 368
L+Y GI GN+ S H E T VG +G ++ I GA+L + L+ + + +
Sbjct: 102 LLYLATGIVGNVMSIAHYNMAAETTVSVGASGAIYGIYGAFLYVALFQRTLMDEASRKTL 161
Query: 369 FQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRN 420
+ SF ++N ++ AH G +G FL +++L R+
Sbjct: 162 YTLLGFGILFSFAVAN---INWTAHFGGLLSGF---FLYGLMIRLTGQRKRH 207
>gi|255282943|ref|ZP_05347498.1| putative small hydrophobic molecule transporter protein [Bryantella
formatexigens DSM 14469]
gi|255266482|gb|EET59687.1| peptidase, S54 family [Marvinbryantia formatexigens DSM 14469]
Length = 205
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 10/155 (6%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GE++RL T MFLH G H+ + L G + + GP + +IY GG++GN+ SFL
Sbjct: 58 GEYYRLFTCMFLHFGWQHLFYNMLLLWFAGDMLEERSGPVRYLVIYLAGGVAGNVLSFLT 117
Query: 331 TPEPTV---GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP 387
E V G +G VFA+IGA + +N+ + + + A+LS A F+ +
Sbjct: 118 GMERQVVSAGASGAVFAVIGALVWLVVKNRGKVEGIDNRGLCMMAVLSLAQGFMDAG--- 174
Query: 388 VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
VD AHLG G I GFL +++ A R +
Sbjct: 175 VDHMAHLG----GFIGGFLLAAVLRTPSAVRRKDR 205
>gi|255690223|ref|ZP_05413898.1| peptidase, S54 family [Bacteroides finegoldii DSM 17565]
gi|260624242|gb|EEX47113.1| peptidase, S54 family [Bacteroides finegoldii DSM 17565]
Length = 584
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 14/172 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ +++ VF+ IAS + SL L +GA L L G+WWR VT F+H G FH
Sbjct: 158 ILIDLNILVFIVMIASGVEIMSPSTLSL-LKWGADFGPLTLTGDWWRAVTCNFIHIGAFH 216
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 217 LLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLYG 276
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHL 394
+L + F ++ IAK+ +KA+L++ L F+ N +D AH+
Sbjct: 277 IFLAFLFFHR--IAKEQ-----RKALLTSILIFVGYNLVYGMKAGIDNAAHI 321
>gi|148544432|ref|YP_001271802.1| rhomboid family protein [Lactobacillus reuteri DSM 20016]
gi|184153796|ref|YP_001842137.1| hypothetical protein LAR_1141 [Lactobacillus reuteri JCM 1112]
gi|227363140|ref|ZP_03847275.1| S54 family peptidase [Lactobacillus reuteri MM2-3]
gi|325682754|ref|ZP_08162270.1| S54 family peptidase [Lactobacillus reuteri MM4-1A]
gi|148531466|gb|ABQ83465.1| Rhomboid family protein [Lactobacillus reuteri DSM 20016]
gi|183225140|dbj|BAG25657.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227071858|gb|EEI10146.1| S54 family peptidase [Lactobacillus reuteri MM2-3]
gi|324977104|gb|EGC14055.1| S54 family peptidase [Lactobacillus reuteri MM4-1A]
Length = 219
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 6/158 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA+ LI GEWWRLV+P+FLH GL H+ ++ LL G + + +G + +IY +
Sbjct: 42 GARSTPLIREGEWWRLVSPVFLHVGLSHLVVNSVTLLYIGRYIEEFFGHWRMVVIYFVSA 101
Query: 321 ISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQF-QNKDLIAKDVSERMFQKAILSTAL 378
+ GN TS + P + G + +F + GA+L+ ++I + +S I++ +
Sbjct: 102 LFGNFTSAVFMPSTISAGASTAIFGLFGAFLMLGVCFRHNVIVRVLSRTFLLFVIINIVM 161
Query: 379 SFIISNFGPVDTWAHLGAAFTGIIYGFLT-CPLVQLGD 415
F +S VD H+G F G F+ P+++ D
Sbjct: 162 DFFLSG---VDLIGHIGGLFGGFFIAFIVGAPMLETVD 196
>gi|310641361|ref|YP_003946119.1| rhomboid family protein [Paenibacillus polymyxa SC2]
gi|386040403|ref|YP_005959357.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
polymyxa M1]
gi|309246311|gb|ADO55878.1| Rhomboid family protein [Paenibacillus polymyxa SC2]
gi|343096441|emb|CCC84650.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
polymyxa M1]
Length = 207
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGA INE + WR V+ MFLH+G H+ + +A+L F P + + G + L+Y +
Sbjct: 48 YGALINEAPFTDQLWRYVSAMFLHAGFDHLLFNSFAILVFAPPLERLLGSLRYVLLYLVT 107
Query: 320 GISGNLTSFLH---TPEPT--VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL 374
G+ GN+ S H E T VG +G ++ I GA+L + L+ + ++
Sbjct: 108 GVVGNILSIAHYNMVAETTVSVGASGAIYGIYGAFLYVALFQRSLMDDASRKTLYTLLGF 167
Query: 375 STALSFIISNFGPVDTWAHLGAAFTG-IIYGFL 406
SF ++N ++ AH G +G +YG L
Sbjct: 168 GILFSFAVAN---INWTAHFGGLLSGFFMYGLL 197
>gi|430851801|ref|ZP_19469536.1| S54 family peptidase [Enterococcus faecium E1258]
gi|430542383|gb|ELA82491.1| S54 family peptidase [Enterococcus faecium E1258]
Length = 232
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
+P G L+ EWWRLVTP+F+H GL H ++ L G Q+ YG + FFLI
Sbjct: 41 IPYYAGMYGPYLVHFNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLI 100
Query: 316 YTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y GI GN SF + G + +F + GA I F K +++ + +
Sbjct: 101 YMFSGIMGNTASFAFNEANVLSGGASTSIFGLFGALFILGFHFKH---NPAIQQLVRHFL 157
Query: 374 LSTALSFIISNFG----PVDTWAH 393
L L+F+ FG VD W H
Sbjct: 158 LFIVLTFV---FGLLDTSVDVWGH 178
>gi|428216600|ref|YP_007101065.1| Peptidase S54, rhomboid domain-containing protein [Pseudanabaena
sp. PCC 7367]
gi|427988382|gb|AFY68637.1| Peptidase S54, rhomboid domain protein [Pseudanabaena sp. PCC 7367]
Length = 530
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 25/204 (12%)
Query: 221 TSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILV---GEWWRLV 277
+ +Y+ +L+ +++A+F EIA G L LY + I V GEWWRLV
Sbjct: 328 SERIYVSYVLIGLNLAMFALEIAFG------GSTDLGTLYQLGALDPIAVRHQGEWWRLV 381
Query: 278 TPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT----SFLHTPE 333
MFLH G H+ ++ L G V S G + + L+Y GI LT +F +PE
Sbjct: 382 NAMFLHYGYIHLFMNMIGLYFLGGFVETSLGWWRYLLVYLFSGIGSMLTVTIVAFFVSPE 441
Query: 334 ---PTVGGTGPVFAIIGA-----WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF 385
TVG +G + ++GA WL +Q + + A+ + +F L F + N
Sbjct: 442 LPQITVGASGAIMGMVGATGALLWLAWQRERAKVAARRLRTVLFIIG-LQVFFDFAVPNV 500
Query: 386 GPVDTWAHLGAAFTGIIYGFLTCP 409
V H G I G+L P
Sbjct: 501 SFV---GHTSGLILGAIAGWLVAP 521
>gi|69250415|ref|ZP_00605147.1| Rhomboid-like protein [Enterococcus faecium DO]
gi|257878558|ref|ZP_05658211.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257883193|ref|ZP_05662846.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257884310|ref|ZP_05663963.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257889244|ref|ZP_05668897.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257894684|ref|ZP_05674337.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260560144|ref|ZP_05832322.1| predicted protein [Enterococcus faecium C68]
gi|261208172|ref|ZP_05922846.1| predicted protein [Enterococcus faecium TC 6]
gi|289566221|ref|ZP_06446654.1| predicted protein [Enterococcus faecium D344SRF]
gi|293553953|ref|ZP_06674557.1| integral membrane protein [Enterococcus faecium E1039]
gi|293559375|ref|ZP_06675916.1| integral membrane protein [Enterococcus faecium E1162]
gi|293567435|ref|ZP_06678782.1| integral membrane protein [Enterococcus faecium E1071]
gi|294618879|ref|ZP_06698391.1| hypothetical protein EfmE1679_1730 [Enterococcus faecium E1679]
gi|294620730|ref|ZP_06699937.1| integral membrane protein [Enterococcus faecium U0317]
gi|383329069|ref|YP_005354953.1| peptidase, S54 family protein [Enterococcus faecium Aus0004]
gi|406581363|ref|ZP_11056520.1| peptidase, S54 family protein [Enterococcus sp. GMD4E]
gi|406583667|ref|ZP_11058722.1| peptidase, S54 family protein [Enterococcus sp. GMD3E]
gi|406585946|ref|ZP_11060899.1| peptidase, S54 family protein [Enterococcus sp. GMD2E]
gi|406591288|ref|ZP_11065573.1| peptidase, S54 family protein [Enterococcus sp. GMD1E]
gi|410937330|ref|ZP_11369191.1| S54 family peptidase [Enterococcus sp. GMD5E]
gi|415887925|ref|ZP_11549016.1| integral membrane protein [Enterococcus faecium E4453]
gi|416135289|ref|ZP_11598486.1| integral membrane protein [Enterococcus faecium E4452]
gi|427396310|ref|ZP_18889069.1| hypothetical protein HMPREF9307_01245 [Enterococcus durans
FB129-CNAB-4]
gi|430819831|ref|ZP_19438475.1| S54 family peptidase [Enterococcus faecium E0045]
gi|430825622|ref|ZP_19443826.1| S54 family peptidase [Enterococcus faecium E0164]
gi|430827756|ref|ZP_19445888.1| S54 family peptidase [Enterococcus faecium E0269]
gi|430830843|ref|ZP_19448899.1| S54 family peptidase [Enterococcus faecium E0333]
gi|430832956|ref|ZP_19450969.1| S54 family peptidase [Enterococcus faecium E0679]
gi|430835660|ref|ZP_19453648.1| S54 family peptidase [Enterococcus faecium E0680]
gi|430838244|ref|ZP_19456192.1| S54 family peptidase [Enterococcus faecium E0688]
gi|430845905|ref|ZP_19463770.1| S54 family peptidase [Enterococcus faecium E1133]
gi|430849513|ref|ZP_19467289.1| S54 family peptidase [Enterococcus faecium E1185]
gi|430858002|ref|ZP_19475631.1| S54 family peptidase [Enterococcus faecium E1552]
gi|430860336|ref|ZP_19477939.1| S54 family peptidase [Enterococcus faecium E1573]
gi|430871476|ref|ZP_19483799.1| S54 family peptidase [Enterococcus faecium E1575]
gi|430948341|ref|ZP_19485930.1| S54 family peptidase [Enterococcus faecium E1576]
gi|431005335|ref|ZP_19488981.1| S54 family peptidase [Enterococcus faecium E1578]
gi|431146274|ref|ZP_19499171.1| S54 family peptidase [Enterococcus faecium E1620]
gi|431229909|ref|ZP_19502112.1| S54 family peptidase [Enterococcus faecium E1622]
gi|431252249|ref|ZP_19504307.1| S54 family peptidase [Enterococcus faecium E1623]
gi|431292229|ref|ZP_19506777.1| S54 family peptidase [Enterococcus faecium E1626]
gi|431371343|ref|ZP_19509976.1| S54 family peptidase [Enterococcus faecium E1627]
gi|431497561|ref|ZP_19514715.1| S54 family peptidase [Enterococcus faecium E1634]
gi|431542045|ref|ZP_19518274.1| S54 family peptidase [Enterococcus faecium E1731]
gi|431651848|ref|ZP_19523777.1| S54 family peptidase [Enterococcus faecium E1904]
gi|431742997|ref|ZP_19531878.1| S54 family peptidase [Enterococcus faecium E2071]
gi|431746314|ref|ZP_19535148.1| S54 family peptidase [Enterococcus faecium E2134]
gi|431749981|ref|ZP_19538709.1| S54 family peptidase [Enterococcus faecium E2297]
gi|431754961|ref|ZP_19543621.1| S54 family peptidase [Enterococcus faecium E2883]
gi|431764245|ref|ZP_19552788.1| S54 family peptidase [Enterococcus faecium E4215]
gi|431767338|ref|ZP_19555792.1| S54 family peptidase [Enterococcus faecium E1321]
gi|431770954|ref|ZP_19559348.1| S54 family peptidase [Enterococcus faecium E1644]
gi|431772407|ref|ZP_19560748.1| S54 family peptidase [Enterococcus faecium E2369]
gi|431775648|ref|ZP_19563920.1| S54 family peptidase [Enterococcus faecium E2560]
gi|431778920|ref|ZP_19567125.1| S54 family peptidase [Enterococcus faecium E4389]
gi|431781758|ref|ZP_19569901.1| S54 family peptidase [Enterococcus faecium E6012]
gi|431785858|ref|ZP_19573880.1| S54 family peptidase [Enterococcus faecium E6045]
gi|447912440|ref|YP_007393852.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecium NRRL B-2354]
gi|68193952|gb|EAN08519.1| Rhomboid-like protein [Enterococcus faecium DO]
gi|257812786|gb|EEV41544.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257818851|gb|EEV46179.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257820148|gb|EEV47296.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257825604|gb|EEV52230.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257831063|gb|EEV57670.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260073979|gb|EEW62303.1| predicted protein [Enterococcus faecium C68]
gi|260077606|gb|EEW65323.1| predicted protein [Enterococcus faecium TC 6]
gi|289161999|gb|EFD09866.1| predicted protein [Enterococcus faecium D344SRF]
gi|291589832|gb|EFF21633.1| integral membrane protein [Enterococcus faecium E1071]
gi|291594879|gb|EFF26244.1| hypothetical protein EfmE1679_1730 [Enterococcus faecium E1679]
gi|291599710|gb|EFF30720.1| integral membrane protein [Enterococcus faecium U0317]
gi|291601879|gb|EFF32127.1| integral membrane protein [Enterococcus faecium E1039]
gi|291606660|gb|EFF36053.1| integral membrane protein [Enterococcus faecium E1162]
gi|364092230|gb|EHM34621.1| integral membrane protein [Enterococcus faecium E4452]
gi|364095003|gb|EHM37105.1| integral membrane protein [Enterococcus faecium E4453]
gi|378938763|gb|AFC63835.1| peptidase, S54 family protein [Enterococcus faecium Aus0004]
gi|404452763|gb|EJZ99915.1| peptidase, S54 family protein [Enterococcus sp. GMD4E]
gi|404456327|gb|EKA03053.1| peptidase, S54 family protein [Enterococcus sp. GMD3E]
gi|404461921|gb|EKA07771.1| peptidase, S54 family protein [Enterococcus sp. GMD2E]
gi|404467899|gb|EKA12955.1| peptidase, S54 family protein [Enterococcus sp. GMD1E]
gi|410734441|gb|EKQ76361.1| S54 family peptidase [Enterococcus sp. GMD5E]
gi|425722980|gb|EKU85871.1| hypothetical protein HMPREF9307_01245 [Enterococcus durans
FB129-CNAB-4]
gi|430440034|gb|ELA50311.1| S54 family peptidase [Enterococcus faecium E0045]
gi|430446087|gb|ELA55786.1| S54 family peptidase [Enterococcus faecium E0164]
gi|430482432|gb|ELA59550.1| S54 family peptidase [Enterococcus faecium E0333]
gi|430484358|gb|ELA61379.1| S54 family peptidase [Enterococcus faecium E0269]
gi|430486411|gb|ELA63247.1| S54 family peptidase [Enterococcus faecium E0679]
gi|430489197|gb|ELA65826.1| S54 family peptidase [Enterococcus faecium E0680]
gi|430491988|gb|ELA68429.1| S54 family peptidase [Enterococcus faecium E0688]
gi|430537559|gb|ELA77889.1| S54 family peptidase [Enterococcus faecium E1185]
gi|430539725|gb|ELA79964.1| S54 family peptidase [Enterococcus faecium E1133]
gi|430545954|gb|ELA85920.1| S54 family peptidase [Enterococcus faecium E1552]
gi|430552264|gb|ELA91999.1| S54 family peptidase [Enterococcus faecium E1573]
gi|430557796|gb|ELA97233.1| S54 family peptidase [Enterococcus faecium E1575]
gi|430558114|gb|ELA97546.1| S54 family peptidase [Enterococcus faecium E1576]
gi|430561368|gb|ELB00636.1| S54 family peptidase [Enterococcus faecium E1578]
gi|430573895|gb|ELB12673.1| S54 family peptidase [Enterococcus faecium E1622]
gi|430575814|gb|ELB14511.1| S54 family peptidase [Enterococcus faecium E1620]
gi|430578675|gb|ELB17227.1| S54 family peptidase [Enterococcus faecium E1623]
gi|430582141|gb|ELB20569.1| S54 family peptidase [Enterococcus faecium E1626]
gi|430583415|gb|ELB21789.1| S54 family peptidase [Enterococcus faecium E1627]
gi|430588496|gb|ELB26688.1| S54 family peptidase [Enterococcus faecium E1634]
gi|430593092|gb|ELB31079.1| S54 family peptidase [Enterococcus faecium E1731]
gi|430600901|gb|ELB38527.1| S54 family peptidase [Enterococcus faecium E1904]
gi|430607361|gb|ELB44681.1| S54 family peptidase [Enterococcus faecium E2071]
gi|430609083|gb|ELB46289.1| S54 family peptidase [Enterococcus faecium E2134]
gi|430610628|gb|ELB47769.1| S54 family peptidase [Enterococcus faecium E2297]
gi|430618789|gb|ELB55630.1| S54 family peptidase [Enterococcus faecium E2883]
gi|430631142|gb|ELB67472.1| S54 family peptidase [Enterococcus faecium E1321]
gi|430631430|gb|ELB67752.1| S54 family peptidase [Enterococcus faecium E4215]
gi|430634404|gb|ELB70530.1| S54 family peptidase [Enterococcus faecium E1644]
gi|430638095|gb|ELB74076.1| S54 family peptidase [Enterococcus faecium E2369]
gi|430642917|gb|ELB78683.1| S54 family peptidase [Enterococcus faecium E2560]
gi|430643401|gb|ELB79145.1| S54 family peptidase [Enterococcus faecium E4389]
gi|430646729|gb|ELB82195.1| S54 family peptidase [Enterococcus faecium E6045]
gi|430648763|gb|ELB84160.1| S54 family peptidase [Enterococcus faecium E6012]
gi|445188149|gb|AGE29791.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecium NRRL B-2354]
Length = 232
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
+P G L+ EWWRLVTP+F+H GL H ++ L G Q+ YG + FFLI
Sbjct: 41 IPYYAGMYGPYLVHFNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLI 100
Query: 316 YTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y GI GN SF + G + +F + GA I F K +++ + +
Sbjct: 101 YMFSGIMGNTASFAFNEANVLSGGASTSIFGLFGALFILGFHFKH---NPAIQQLVRHFL 157
Query: 374 LSTALSFIISNFG----PVDTWAH 393
L L+F+ FG VD W H
Sbjct: 158 LFIVLTFV---FGLLDTSVDVWGH 178
>gi|374374022|ref|ZP_09631681.1| Peptidase S54, rhomboid domain [Niabella soli DSM 19437]
gi|373233464|gb|EHP53258.1| Peptidase S54, rhomboid domain [Niabella soli DSM 19437]
Length = 490
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 221 TSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPM 280
T ++ IL+ +++ VF+ S + SL L +GA + L G+WWRL+T
Sbjct: 150 TQGFFITPILIDLNILVFILMTISGVNILMPDNESL-LNWGANFRPITLEGQWWRLLTNC 208
Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS-FLHTPEPTVGGT 339
FLH G+FH+ L+ +ALL G + G F Y L GI+ ++TS + H + G +
Sbjct: 209 FLHVGIFHLLLNMYALLYIGVLLEPLLGRTRFISAYLLTGITASITSLWWHDLTISAGAS 268
Query: 340 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAH 393
G +F + G +L ++ ++ E+ +K +L++ F+ N G +D AH
Sbjct: 269 GAIFGMYGVFLA-------MLTTNLIEKTARKPLLTSIAVFVGYNLIYGLKGGIDNAAH 320
>gi|430843907|ref|ZP_19461805.1| S54 family peptidase [Enterococcus faecium E1050]
gi|430854949|ref|ZP_19472660.1| S54 family peptidase [Enterococcus faecium E1392]
gi|430496497|gb|ELA72556.1| S54 family peptidase [Enterococcus faecium E1050]
gi|430547487|gb|ELA87410.1| S54 family peptidase [Enterococcus faecium E1392]
Length = 232
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
+P G L+ EWWRLVTP+F+H GL H ++ L G Q+ YG + FFLI
Sbjct: 41 IPYYAGMYGPYLVHFNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLI 100
Query: 316 YTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y GI GN SF + G + +F + GA I F K +++ + +
Sbjct: 101 YMFSGIMGNTASFAFNEANVLSGGASTSIFGLFGALFILGFHFKH---NPAIQQLVRHFL 157
Query: 374 LSTALSFIISNFG----PVDTWAH 393
L L+F+ FG VD W H
Sbjct: 158 LFIVLTFV---FGLLDTSVDVWGH 178
>gi|227485794|ref|ZP_03916110.1| S54 family peptidase [Anaerococcus lactolyticus ATCC 51172]
gi|227236172|gb|EEI86187.1| S54 family peptidase [Anaerococcus lactolyticus ATCC 51172]
Length = 227
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA L+ GEWWRL+T F+H G FH+ + + + GP + +G F F +IY +
Sbjct: 43 FGANSKILVAHGEWWRLITASFIHIGFFHILFNMYFFYSLGPIFERLFGSFNFLIIYLIS 102
Query: 320 GISGNLTSF-LHTPEP-TVGGTGPVFAIIG--AWLIYQFQNKDLIAKDVSERMFQKAILS 375
GI GNL SF L +P + G + ++ ++G L+ ++N ++I R F + +S
Sbjct: 103 GIFGNLLSFALGSPYTVSAGASTSLYGMLGLAIGLMATYRNDEII------RSFGASFIS 156
Query: 376 -TALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPL 410
++ + S P V + HLG G I GFL +
Sbjct: 157 IVVINVVYSLLAPGVGVYGHLG----GFIAGFLLAGI 189
>gi|323340676|ref|ZP_08080928.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335996819|ref|ZP_08562736.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|417974323|ref|ZP_12615144.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
gi|323091799|gb|EFZ34419.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335351889|gb|EGM53380.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|346329320|gb|EGX97618.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
Length = 219
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 12/181 (6%)
Query: 229 ILVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
+L+ I+VA++L A +N + + +GA + GE+WRL+T MFLH GL
Sbjct: 13 VLIGINVAIYLLMTFAGGSQNP-----GVLVRFGANFAPYVSNGEYWRLLTAMFLHIGLE 67
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+AL+ L G + G F ++Y + GI G+ S+ T + G + +F + G
Sbjct: 68 HLALNMLTLYFIGASLEPILGSVRFAVLYLVSGICGDAASYSLTNGLSAGASTALFGLFG 127
Query: 348 AWLIY--QFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGF 405
A+L+ F+N I K ++ + +L+ F S +D W H+G +G ++G+
Sbjct: 128 AYLMLGESFRNNAYI-KMMARQFLLLVVLNIFFDFFSSG---IDIWGHIGGLLSGFLFGY 183
Query: 406 L 406
+
Sbjct: 184 V 184
>gi|170017498|ref|YP_001728417.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc citreum KM20]
gi|414597489|ref|ZP_11447055.1| Membrane-associated serine protease [Leuconostoc citreum LBAE E16]
gi|169804355|gb|ACA82973.1| Small hydrophobic molecule transporter protein, putative
[Leuconostoc citreum KM20]
gi|390481770|emb|CCF29116.1| Membrane-associated serine protease [Leuconostoc citreum LBAE E16]
Length = 229
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 8/176 (4%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGE-WWRLVTPMFLHSGLFH 288
L +I + VF+FE+ + ++ F + + GAK I + +WRL+TP+FLH+G+ H
Sbjct: 18 LFTITIVVFIFELIASHGQTDNARFLVSV--GAKWGPDIAHNQAYWRLLTPVFLHAGIMH 75
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGTGPVFAIIG 347
+ + L GP +++G + F ++Y GGI GN+ S+L +P +VG + +FA+
Sbjct: 76 IVTNMLTLWFVGPIAERAFGSWRFLMLYAFGGIVGNIFSYLLSPLAISVGASSALFAMFA 135
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGII 402
++Y + +D F +L L+ P +D W H+G G++
Sbjct: 136 GLILYGVRYRDNPTIRAQGATF---LLFVVLNLFSGLLAPTIDLWGHIGGLIGGMM 188
>gi|430822659|ref|ZP_19441236.1| S54 family peptidase [Enterococcus faecium E0120]
gi|430865218|ref|ZP_19480976.1| S54 family peptidase [Enterococcus faecium E1574]
gi|430442969|gb|ELA52976.1| S54 family peptidase [Enterococcus faecium E0120]
gi|430553296|gb|ELA92997.1| S54 family peptidase [Enterococcus faecium E1574]
Length = 232
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
+P G L+ EWWRLVTP+F+H GL H ++ L G Q+ YG + FFLI
Sbjct: 41 IPYYAGMYGPYLVHFNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLI 100
Query: 316 YTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y GI GN SF + G + +F + GA I F K +++ + +
Sbjct: 101 YMFSGIMGNTASFAFNEANVLSGGASTSIFGLFGALFILGFHFKH---NPAIQQLVRHFL 157
Query: 374 LSTALSFIISNFG----PVDTWAH 393
L L+F+ FG VD W H
Sbjct: 158 LFIVLTFV---FGLLDTSVDVWGH 178
>gi|314937472|ref|ZP_07844805.1| peptidase, S54 family protein [Enterococcus faecium TX0133a04]
gi|314942131|ref|ZP_07848985.1| peptidase, S54 family protein [Enterococcus faecium TX0133C]
gi|314947529|ref|ZP_07850944.1| peptidase, S54 family protein [Enterococcus faecium TX0082]
gi|314951516|ref|ZP_07854565.1| peptidase, S54 family protein [Enterococcus faecium TX0133A]
gi|314992606|ref|ZP_07858024.1| peptidase, S54 family protein [Enterococcus faecium TX0133B]
gi|314995459|ref|ZP_07860559.1| peptidase, S54 family protein [Enterococcus faecium TX0133a01]
gi|389868892|ref|YP_006376315.1| S54 family peptidase [Enterococcus faecium DO]
gi|424788145|ref|ZP_18214906.1| peptidase, S54 family [Enterococcus faecium V689]
gi|424797226|ref|ZP_18222844.1| peptidase, S54 family [Enterococcus faecium S447]
gi|424834719|ref|ZP_18259416.1| peptidase, S54 family [Enterococcus faecium R501]
gi|424854943|ref|ZP_18279284.1| peptidase, S54 family [Enterococcus faecium R499]
gi|424901358|ref|ZP_18324875.1| peptidase, S54 family [Enterococcus faecium R497]
gi|424950948|ref|ZP_18366086.1| peptidase, S54 family [Enterococcus faecium R496]
gi|424954911|ref|ZP_18369781.1| peptidase, S54 family [Enterococcus faecium R494]
gi|424958027|ref|ZP_18372707.1| peptidase, S54 family [Enterococcus faecium R446]
gi|424959269|ref|ZP_18373867.1| peptidase, S54 family [Enterococcus faecium P1986]
gi|424964191|ref|ZP_18378308.1| peptidase, S54 family [Enterococcus faecium P1190]
gi|424968837|ref|ZP_18382435.1| peptidase, S54 family [Enterococcus faecium P1140]
gi|424969958|ref|ZP_18383500.1| peptidase, S54 family [Enterococcus faecium P1139]
gi|424973590|ref|ZP_18386863.1| peptidase, S54 family [Enterococcus faecium P1137]
gi|424976843|ref|ZP_18389907.1| peptidase, S54 family [Enterococcus faecium P1123]
gi|424980661|ref|ZP_18393441.1| peptidase, S54 family [Enterococcus faecium ERV99]
gi|424983494|ref|ZP_18396077.1| peptidase, S54 family [Enterococcus faecium ERV69]
gi|424987151|ref|ZP_18399541.1| peptidase, S54 family [Enterococcus faecium ERV38]
gi|424990088|ref|ZP_18402319.1| peptidase, S54 family [Enterococcus faecium ERV26]
gi|424993747|ref|ZP_18405723.1| peptidase, S54 family [Enterococcus faecium ERV168]
gi|424998007|ref|ZP_18409725.1| peptidase, S54 family [Enterococcus faecium ERV165]
gi|425000265|ref|ZP_18411839.1| peptidase, S54 family [Enterococcus faecium ERV161]
gi|425003083|ref|ZP_18414473.1| peptidase, S54 family [Enterococcus faecium ERV102]
gi|425008016|ref|ZP_18419116.1| peptidase, S54 family [Enterococcus faecium ERV1]
gi|425011141|ref|ZP_18422055.1| peptidase, S54 family [Enterococcus faecium E422]
gi|425014985|ref|ZP_18425629.1| peptidase, S54 family [Enterococcus faecium E417]
gi|425018773|ref|ZP_18429177.1| peptidase, S54 family [Enterococcus faecium C621]
gi|425021150|ref|ZP_18431426.1| peptidase, S54 family [Enterococcus faecium C497]
gi|425023525|ref|ZP_18433641.1| peptidase, S54 family [Enterococcus faecium C1904]
gi|425033828|ref|ZP_18438766.1| peptidase, S54 family [Enterococcus faecium 515]
gi|425034295|ref|ZP_18439198.1| peptidase, S54 family [Enterococcus faecium 514]
gi|425038841|ref|ZP_18443427.1| peptidase, S54 family [Enterococcus faecium 513]
gi|425041294|ref|ZP_18445698.1| peptidase, S54 family [Enterococcus faecium 511]
gi|425047176|ref|ZP_18451151.1| peptidase, S54 family [Enterococcus faecium 510]
gi|425047543|ref|ZP_18451492.1| peptidase, S54 family [Enterococcus faecium 509]
gi|425051726|ref|ZP_18455375.1| peptidase, S54 family [Enterococcus faecium 506]
gi|425059543|ref|ZP_18462879.1| peptidase, S54 family [Enterococcus faecium 504]
gi|425061272|ref|ZP_18464521.1| peptidase, S54 family [Enterococcus faecium 503]
gi|313590293|gb|EFR69138.1| peptidase, S54 family protein [Enterococcus faecium TX0133a01]
gi|313592898|gb|EFR71743.1| peptidase, S54 family protein [Enterococcus faecium TX0133B]
gi|313596356|gb|EFR75201.1| peptidase, S54 family protein [Enterococcus faecium TX0133A]
gi|313599054|gb|EFR77899.1| peptidase, S54 family protein [Enterococcus faecium TX0133C]
gi|313643113|gb|EFS07693.1| peptidase, S54 family protein [Enterococcus faecium TX0133a04]
gi|313646079|gb|EFS10659.1| peptidase, S54 family protein [Enterococcus faecium TX0082]
gi|388534141|gb|AFK59333.1| S54 family peptidase [Enterococcus faecium DO]
gi|402921525|gb|EJX41965.1| peptidase, S54 family [Enterococcus faecium S447]
gi|402922053|gb|EJX42460.1| peptidase, S54 family [Enterococcus faecium R501]
gi|402923161|gb|EJX43479.1| peptidase, S54 family [Enterococcus faecium V689]
gi|402930620|gb|EJX50256.1| peptidase, S54 family [Enterococcus faecium R497]
gi|402931957|gb|EJX51504.1| peptidase, S54 family [Enterococcus faecium R496]
gi|402932028|gb|EJX51566.1| peptidase, S54 family [Enterococcus faecium R499]
gi|402935349|gb|EJX54605.1| peptidase, S54 family [Enterococcus faecium R494]
gi|402941861|gb|EJX60530.1| peptidase, S54 family [Enterococcus faecium R446]
gi|402947297|gb|EJX65517.1| peptidase, S54 family [Enterococcus faecium P1190]
gi|402950480|gb|EJX68478.1| peptidase, S54 family [Enterococcus faecium P1140]
gi|402951035|gb|EJX68992.1| peptidase, S54 family [Enterococcus faecium P1986]
gi|402958278|gb|EJX75600.1| peptidase, S54 family [Enterococcus faecium P1137]
gi|402962837|gb|EJX79744.1| peptidase, S54 family [Enterococcus faecium P1139]
gi|402965860|gb|EJX82542.1| peptidase, S54 family [Enterococcus faecium ERV99]
gi|402968286|gb|EJX84774.1| peptidase, S54 family [Enterococcus faecium P1123]
gi|402971363|gb|EJX87637.1| peptidase, S54 family [Enterococcus faecium ERV69]
gi|402975043|gb|EJX91030.1| peptidase, S54 family [Enterococcus faecium ERV38]
gi|402980429|gb|EJX96038.1| peptidase, S54 family [Enterococcus faecium ERV26]
gi|402981790|gb|EJX97301.1| peptidase, S54 family [Enterococcus faecium ERV168]
gi|402984436|gb|EJX99745.1| peptidase, S54 family [Enterococcus faecium ERV165]
gi|402989659|gb|EJY04575.1| peptidase, S54 family [Enterococcus faecium ERV161]
gi|402992779|gb|EJY07447.1| peptidase, S54 family [Enterococcus faecium ERV102]
gi|402993690|gb|EJY08281.1| peptidase, S54 family [Enterococcus faecium ERV1]
gi|402997135|gb|EJY11484.1| peptidase, S54 family [Enterococcus faecium E417]
gi|402997799|gb|EJY12101.1| peptidase, S54 family [Enterococcus faecium E422]
gi|403000456|gb|EJY14575.1| peptidase, S54 family [Enterococcus faecium C621]
gi|403007658|gb|EJY21214.1| peptidase, S54 family [Enterococcus faecium C497]
gi|403008233|gb|EJY21755.1| peptidase, S54 family [Enterococcus faecium 515]
gi|403009623|gb|EJY23053.1| peptidase, S54 family [Enterococcus faecium C1904]
gi|403018441|gb|EJY31125.1| peptidase, S54 family [Enterococcus faecium 513]
gi|403020858|gb|EJY33355.1| peptidase, S54 family [Enterococcus faecium 514]
gi|403022424|gb|EJY34791.1| peptidase, S54 family [Enterococcus faecium 510]
gi|403026198|gb|EJY38202.1| peptidase, S54 family [Enterococcus faecium 511]
gi|403033405|gb|EJY44908.1| peptidase, S54 family [Enterococcus faecium 509]
gi|403034691|gb|EJY46121.1| peptidase, S54 family [Enterococcus faecium 504]
gi|403037019|gb|EJY48346.1| peptidase, S54 family [Enterococcus faecium 506]
gi|403041786|gb|EJY52779.1| peptidase, S54 family [Enterococcus faecium 503]
Length = 238
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
+P G L+ EWWRLVTP+F+H GL H ++ L G Q+ YG + FFLI
Sbjct: 47 IPYYAGMYGPYLVHFNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLI 106
Query: 316 YTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y GI GN SF + G + +F + GA I F K +++ + +
Sbjct: 107 YMFSGIMGNTASFAFNEANVLSGGASTSIFGLFGALFILGFHFKH---NPAIQQLVRHFL 163
Query: 374 LSTALSFIISNFG----PVDTWAH 393
L L+F+ FG VD W H
Sbjct: 164 LFIVLTFV---FGLLDTSVDVWGH 184
>gi|407718091|ref|YP_006795496.1| small hydrophobic molecule transporter protein [Leuconostoc
carnosum JB16]
gi|407241847|gb|AFT81497.1| small hydrophobic molecule transporter protein [Leuconostoc
carnosum JB16]
Length = 229
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
++WRL+TP+FLH+G H+A + L GP +++G + F +Y GGI GN+ S+L
Sbjct: 59 QYWRLLTPVFLHAGFMHIATNMLTLWFIGPLAEEAFGRWKFLGLYFFGGIFGNIMSYLFA 118
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNK-DLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
P +VG + +FA+ G ++Y Q K D + M +L+ F ++ +D
Sbjct: 119 PLTISVGASTALFAMFGGLILYAVQFKEDPRIRSQGTIMILFVVLNLVTGFASTD---ID 175
Query: 390 TWAHLGAAFTG----IIYGF 405
W H+G G +I+GF
Sbjct: 176 MWGHIGGLIGGMMFTVIFGF 195
>gi|346974557|gb|EGY18009.1| rhomboid family membrane protein [Verticillium dahliae VdLs.17]
Length = 567
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 10/145 (6%)
Query: 265 NELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN 324
NE +W+R +TP+FLH+GL H+ ++ +T G ++ + GP FFL+Y GI GN
Sbjct: 306 NEKGEPNQWFRFITPIFLHAGLIHIGVNMLLQMTIGKEMEMAIGPVRFFLVYFSAGIFGN 365
Query: 325 L--TSFLHTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ ++ T E + G +G +F II L Y ++++ KD+ MF +L +
Sbjct: 366 VMGANYAGTGEASTGASGALFGIIALTALDLAYSWKDRRHPVKDL---MF--VLLDVVIC 420
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYG 404
F++ +D +AH+G G+ G
Sbjct: 421 FVLGLLPGLDNFAHIGGFLMGLCLG 445
>gi|194466614|ref|ZP_03072601.1| Rhomboid family protein [Lactobacillus reuteri 100-23]
gi|194453650|gb|EDX42547.1| Rhomboid family protein [Lactobacillus reuteri 100-23]
Length = 219
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA+ LI GEWWRLV+P+FLH GL H+ ++ LL G + + +G + +IY +
Sbjct: 42 GARSTSLIREGEWWRLVSPVFLHVGLSHLVVNSVTLLYIGRYIEEFFGHWRMVVIYFISA 101
Query: 321 ISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQF-QNKDLIAKDVSERMFQKAILSTAL 378
I GNL S + P + G + +F + GA+L+ +++++ + +S I++ +
Sbjct: 102 IFGNLASAVFMPLTISAGASTAIFGLFGAFLMLGVCFHRNIVVRVLSRTFLLFVIINIVM 161
Query: 379 SFIISNFGPVDTWAHLGAAFTGIIYGFLT-CPLVQLGDASSR 419
F + VD H+G F G F+ P++ D R
Sbjct: 162 DFFLPG---VDLVGHIGGLFGGFFIAFIVGAPMLGTVDRLKR 200
>gi|124506059|ref|XP_001351627.1| rhomboid protease ROM4 [Plasmodium falciparum 3D7]
gi|23504554|emb|CAD51434.1| rhomboid protease ROM4 [Plasmodium falciparum 3D7]
Length = 759
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
LL G N + GE +RL M+LH G H+ + + + +G L++
Sbjct: 444 LLGGLNTNYIRNYGELYRLFWSMYLHGGFMHILFNVICQIQILWMIEPDWGSIRTGLLFF 503
Query: 318 LGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
+ G++GNL S + P T+G +G ++ +IGA Y + I + +F L
Sbjct: 504 ISGVTGNLLSAVCDPCGVTIGSSGSLYGLIGALFAYYIEYWKTIPRPCCVLIFM--FLVV 561
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
I+ FG D +AH+G G+++GF T V D
Sbjct: 562 MFGIIVGMFGYTDNYAHIGGCLGGVLFGFSTITTVSAAD 600
>gi|431412586|ref|ZP_19512021.1| S54 family peptidase [Enterococcus faecium E1630]
gi|431759476|ref|ZP_19548089.1| S54 family peptidase [Enterococcus faecium E3346]
gi|430589541|gb|ELB27669.1| S54 family peptidase [Enterococcus faecium E1630]
gi|430625986|gb|ELB62579.1| S54 family peptidase [Enterococcus faecium E3346]
Length = 232
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
+P G L+ EWWRLVTP+F+H G+ H ++ L G Q+ YG + FFLI
Sbjct: 41 IPYYTGMYGPYLVHFNEWWRLVTPIFIHFGVMHFVMNSLILYFMGQQIEAIYGHWRFFLI 100
Query: 316 YTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y GI GN SF + G + +F + GA I F K +++ + +
Sbjct: 101 YMFSGIMGNTASFAFNEANVLSGGASTSIFGLFGALFILGFHFK---YNTAIQQLVRHFL 157
Query: 374 LSTALSFIISNFG----PVDTWAH 393
L A++F+ FG VD W H
Sbjct: 158 LFIAMTFV---FGLLDTSVDVWGH 178
>gi|257898204|ref|ZP_05677857.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|293570647|ref|ZP_06681698.1| integral membrane protein, Rhomboid family [Enterococcus faecium
E980]
gi|430841528|ref|ZP_19459447.1| S54 family peptidase [Enterococcus faecium E1007]
gi|431073211|ref|ZP_19494755.1| S54 family peptidase [Enterococcus faecium E1604]
gi|431586112|ref|ZP_19520627.1| S54 family peptidase [Enterococcus faecium E1861]
gi|431737438|ref|ZP_19526392.1| S54 family peptidase [Enterococcus faecium E1972]
gi|431739879|ref|ZP_19528798.1| S54 family peptidase [Enterococcus faecium E2039]
gi|257836116|gb|EEV61190.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|291609318|gb|EFF38589.1| integral membrane protein, Rhomboid family [Enterococcus faecium
E980]
gi|430494304|gb|ELA70554.1| S54 family peptidase [Enterococcus faecium E1007]
gi|430566783|gb|ELB05879.1| S54 family peptidase [Enterococcus faecium E1604]
gi|430593290|gb|ELB31276.1| S54 family peptidase [Enterococcus faecium E1861]
gi|430599095|gb|ELB36811.1| S54 family peptidase [Enterococcus faecium E1972]
gi|430604006|gb|ELB41506.1| S54 family peptidase [Enterococcus faecium E2039]
Length = 232
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
+P G L+ EWWRLVTP+F+H G+ H ++ L G Q+ YG + FFLI
Sbjct: 41 IPYYTGMYGPYLVHFNEWWRLVTPIFIHFGVMHFVMNSLILYFMGQQIEAIYGHWRFFLI 100
Query: 316 YTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y GI GN SF + G + +F + GA I F K +++ + +
Sbjct: 101 YMFSGIMGNTASFAFNEANVLSGGASTSIFGLFGALFILGFHFK---YNTAIQQLVRHFL 157
Query: 374 LSTALSFIISNFG----PVDTWAH 393
L A++F+ FG VD W H
Sbjct: 158 LFIAMTFV---FGLLDTSVDVWGH 178
>gi|417761549|ref|ZP_12409558.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|417776479|ref|ZP_12424317.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|418671929|ref|ZP_13233275.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
gi|409942630|gb|EKN88238.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|410573846|gb|EKQ36890.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|410581051|gb|EKQ48866.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
Length = 514
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRLVT +F+H+G H+ + + L+ V G F ++Y
Sbjct: 359 LEWGANRRIETLAGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 418
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 419 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIM 471
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D AH+G +G + G + L Q G
Sbjct: 472 IVTFILTGLLWGLFGGIDNAAHIGGLVSGTLSGII---LFQFG 511
>gi|257887050|ref|ZP_05666703.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257895615|ref|ZP_05675268.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|293377774|ref|ZP_06623963.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecium
PC4.1]
gi|431033159|ref|ZP_19491005.1| S54 family peptidase [Enterococcus faecium E1590]
gi|431108247|ref|ZP_19497398.1| S54 family peptidase [Enterococcus faecium E1613]
gi|431752138|ref|ZP_19540823.1| S54 family peptidase [Enterococcus faecium E2620]
gi|431756962|ref|ZP_19545594.1| S54 family peptidase [Enterococcus faecium E3083]
gi|431762189|ref|ZP_19550751.1| S54 family peptidase [Enterococcus faecium E3548]
gi|257823104|gb|EEV50036.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257832180|gb|EEV58601.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|292643774|gb|EFF61895.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecium
PC4.1]
gi|430564260|gb|ELB03444.1| S54 family peptidase [Enterococcus faecium E1590]
gi|430569371|gb|ELB08375.1| S54 family peptidase [Enterococcus faecium E1613]
gi|430614202|gb|ELB51191.1| S54 family peptidase [Enterococcus faecium E2620]
gi|430620816|gb|ELB57618.1| S54 family peptidase [Enterococcus faecium E3083]
gi|430624881|gb|ELB61531.1| S54 family peptidase [Enterococcus faecium E3548]
Length = 232
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
+P G L+ EWWRLVTP+F+H G+ H ++ L G Q+ YG + FFLI
Sbjct: 41 IPYYTGMYGPYLVHFNEWWRLVTPIFIHFGVMHFVMNSLILYFMGQQIEAIYGHWRFFLI 100
Query: 316 YTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y GI GN SF + G + +F + GA I F K +++ + +
Sbjct: 101 YMFSGIMGNTASFAFNEANVLSGGASTSIFGLFGALFILGFHFK---YNTAIQQLVRHFL 157
Query: 374 LSTALSFIISNFG----PVDTWAH 393
L A++F+ FG VD W H
Sbjct: 158 LFIAMTFV---FGLLDTSVDVWGH 178
>gi|445059551|ref|YP_007384955.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
gi|443425608|gb|AGC90511.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
Length = 484
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 5/136 (3%)
Query: 268 ILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327
++ GEW+RLVT MFLH H+ ++ +L FG V G + IY GI GN S
Sbjct: 197 VVHGEWYRLVTSMFLHFNFEHILMNMLSLYIFGKIVESVLGSWKMLAIYLFAGIFGNFVS 256
Query: 328 F-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
+T +VG +G +F +IG+ + +K + + + + IL LS +SN
Sbjct: 257 LSFNTTTISVGASGAIFGLIGSIFAILYLSKTFDKRVIGQLLIALVIL-IGLSLFMSN-- 313
Query: 387 PVDTWAHLGAAFTGII 402
++ AHLG G++
Sbjct: 314 -INVMAHLGGFIGGLL 328
>gi|440748391|ref|ZP_20927644.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
gi|436483215|gb|ELP39283.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
Length = 517
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 4/195 (2%)
Query: 225 YLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHS 284
Y+ SIL+ ++ +FL S + L L +GA G+WWRLV+ MFLH
Sbjct: 317 YVTSILLDFNILIFLLMTFSGVHIISPNGIEL-LEWGANRRSETTGGDWWRLVSSMFLHG 375
Query: 285 GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS-FLHTPEPTVGGTGPVF 343
G+ H+ L+ + L+ V +G +F++Y GI G+L S + + +VG +G +F
Sbjct: 376 GIMHLFLNIYGLVIAALFVEPVFGRIKYFILYFASGICGSLASIYWYENTISVGASGAIF 435
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
+ GA L N + MF + L ++ G +D AH+G +G ++
Sbjct: 436 GLYGAVLGLLLTNAFPKDGKIGILMFIGPYVGVNL--LVGLTGGIDNAAHIGGLVSGAVF 493
Query: 404 GFLTCPLVQLGDASS 418
G + V+ + S
Sbjct: 494 GIILYLTVKNSEGKS 508
>gi|325297592|ref|YP_004257509.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
gi|324317145|gb|ADY35036.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
Length = 963
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 14/183 (7%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
+L+ I+VA+F+ + E SL + +GA L L G+WWR VT F+H G+ H
Sbjct: 542 LLIYINVALFIVMSICGVSLIEPTGISL-MKWGADFGPLTLTGDWWRTVTCNFIHIGIIH 600
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAIIG 347
+ ++ +ALL G + + G Y L G+ L S PE + G +G +F + G
Sbjct: 601 LLMNMYALLYIGIFLEQIIGSRKLMTAYLLTGLFSALASLTAHPETISAGASGSIFGLYG 660
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF------GPVDTWAHLGAAFTGI 401
+L Y N + E+ +K++L + F+I N +D AH+G +G+
Sbjct: 661 IFLSYLIFNHKI------EKHQRKSLLFSIGFFVIYNLLLGTKEEGIDNAAHIGGLVSGV 714
Query: 402 IYG 404
I G
Sbjct: 715 ILG 717
>gi|300812773|ref|ZP_07093172.1| peptidase, S54 family [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|313124161|ref|YP_004034420.1| membrane-associated serine protease [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|422844075|ref|ZP_16890785.1| S54 family peptidase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
gi|300496246|gb|EFK31369.1| peptidase, S54 family [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|312280724|gb|ADQ61443.1| Membrane-associated serine protease [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|325685831|gb|EGD27902.1| S54 family peptidase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 223
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 19/205 (9%)
Query: 255 SLPLLYGAKIN-ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFF 313
S+ L GA N +++ G+WWRL T FLH G+ H+A + + G +G + F
Sbjct: 34 SVLLKMGAMFNPAVVMEGQWWRLFTAQFLHIGIMHIASNAIMIYYIGQYAEPVFGHWRFL 93
Query: 314 LIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQK 371
LIY L G+ G+L +F + + G + +F + GA F++KD + + ++
Sbjct: 94 LIYLLSGVGGSLLTLAFGNDQAISAGASTALFGLFGAMTCTGFKDKD---NTLLSFLGRQ 150
Query: 372 AILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIR 430
A+ ++ ++ F P VD H+G TG + V LGDA+ + + G L
Sbjct: 151 ALALAVINLVLDVFMPDVDILGHVGGLITGALLA------VILGDATYKGYGKGGRLL-- 202
Query: 431 QYANPCKSLIVFTIFVIILGSFIFV 455
LIV+ + ++ LG + V
Sbjct: 203 ----AAAGLIVYVVLILRLGMVVTV 223
>gi|377556210|ref|ZP_09785925.1| Rhomboid family protein [Lactobacillus gastricus PS3]
gi|376168633|gb|EHS87381.1| Rhomboid family protein [Lactobacillus gastricus PS3]
Length = 221
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 5/152 (3%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA+ L++ G+WWRL+T F+H G+ H+ L+ L G + + +G + LIY +
Sbjct: 40 FGAEYTPLLVAGQWWRLITSAFVHIGIMHLLLNSIVLYYMGNYIEQLFGHWKLILIYIIS 99
Query: 320 GISGNLTSFLHTPEPTVGGTGP-VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
ISGNL S +P G+ +F + GA++ +++ + + ++ I+ +
Sbjct: 100 VISGNLLSAALSPTSIAAGSSTGIFGLFGAFIFLGAEHRQ---QSFLRILTRQYIILMII 156
Query: 379 SFIISNFGP-VDTWAHLGAAFTGIIYGFLTCP 409
+ + P +D W HLG G + G L P
Sbjct: 157 NLVFDLMSPSIDIWGHLGGLLAGFLAGALFDP 188
>gi|302384591|ref|YP_003820413.1| rhomboid family protein [Clostridium saccharolyticum WM1]
gi|302195219|gb|ADL02790.1| Rhomboid family protein [Clostridium saccharolyticum WM1]
Length = 206
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 96/184 (52%), Gaps = 15/184 (8%)
Query: 230 LVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELILV-GEWWRLVTPMFLHSGLF 287
L++++V FL+ E+A N++F + +GA L+L GE++RL+T +F+H G+
Sbjct: 16 LIAMNVIYFLYLEMAGSTVNTQF-----MVNHGAMYAPLVLEEGEYFRLLTSVFMHFGIN 70
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL-----HTPEPTVGGTGPV 342
H+ + L G + ++ G + L Y L G+ N+ S + + + G +G +
Sbjct: 71 HIMNNMLILFILGDNLERALGHIKYLLFYLLCGVGANVISIILNLGDYRSVVSAGASGAI 130
Query: 343 FAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
F +IG L F N+ + +D+S R I + +L F ++ G VD AH+G F GI+
Sbjct: 131 FGVIGGLLYAVFINRGRL-EDLSARQLIIMI-ACSLYFGFTSTG-VDNAAHIGGLFFGIV 187
Query: 403 YGFL 406
G L
Sbjct: 188 LGIL 191
>gi|227551789|ref|ZP_03981838.1| S54 family peptidase [Enterococcus faecium TX1330]
gi|424766449|ref|ZP_18193802.1| peptidase, S54 family [Enterococcus faecalis TX1337RF]
gi|227179094|gb|EEI60066.1| S54 family peptidase [Enterococcus faecium TX1330]
gi|402410424|gb|EJV42827.1| peptidase, S54 family [Enterococcus faecium TX1337RF]
Length = 238
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
+P G L+ EWWRLVTP+F+H G+ H ++ L G Q+ YG + FFLI
Sbjct: 47 IPYYTGMYGPYLVHFNEWWRLVTPIFIHFGVMHFVMNSLILYFMGQQIEAIYGHWRFFLI 106
Query: 316 YTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y GI GN SF + G + +F + GA I F K +++ + +
Sbjct: 107 YMFSGIMGNTASFAFNEANVLSGGASTSIFGLFGALFILGFHFK---YNTAIQQLVRHFL 163
Query: 374 LSTALSFIISNFG----PVDTWAH 393
L A++F+ FG VD W H
Sbjct: 164 LFIAMTFV---FGLLDTSVDVWGH 184
>gi|390456491|ref|ZP_10242019.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
peoriae KCTC 3763]
Length = 207
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGA INE + WR V+ MFLH+G H+ + +A+L F P + + G + L+Y +
Sbjct: 48 YGALINEAPFTDQLWRYVSAMFLHAGFDHLLFNSFAILVFAPPLERLLGSLRYVLLYLVT 107
Query: 320 GISGNLTSFLH---TPEPT--VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL 374
GI GN+ S H E T VG +G ++ I GA+L + + + ++
Sbjct: 108 GIVGNVMSIAHYNMVAETTVSVGASGAIYGIYGAFLYVALFQRSFMDDASRKTLYTLLGF 167
Query: 375 STALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRN 420
SF ++N ++ AH G +G FL +V+L R+
Sbjct: 168 GILFSFAVAN---INWTAHFGGLLSGF---FLYGLMVRLTGQRKRH 207
>gi|425054674|ref|ZP_18458179.1| peptidase, S54 family [Enterococcus faecium 505]
gi|403035626|gb|EJY47012.1| peptidase, S54 family [Enterococcus faecium 505]
Length = 238
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
+P G L+ EWWRLVTP+F+H G+ H ++ L G Q+ YG + FFLI
Sbjct: 47 IPYYTGMYGPYLVHFNEWWRLVTPIFIHFGVMHFVMNSLILYFMGQQIEAIYGHWRFFLI 106
Query: 316 YTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y GI GN SF + G + +F + GA I F K +++ + +
Sbjct: 107 YMFSGIMGNTASFAFNEANVLSGGASTSIFGLFGALFILGFHFK---YNTAIQQLVRHFL 163
Query: 374 LSTALSFIISNFG----PVDTWAH 393
L A++F+ FG VD W H
Sbjct: 164 LFIAMTFV---FGLLDTSVDVWGH 184
>gi|417766158|ref|ZP_12414112.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|400351612|gb|EJP03831.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
Length = 514
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRLVT +F+H+G H+ + + L+ V G F ++Y
Sbjct: 359 LEWGANRRIETLAGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 418
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 419 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIM 471
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D AH+G +G + G + L Q G
Sbjct: 472 IVTFILTGLLWGLFGGIDNAAHIGGLVSGTLSGII---LFQFG 511
>gi|298480750|ref|ZP_06998946.1| S54 family peptidase [Bacteroides sp. D22]
gi|298273184|gb|EFI14749.1| S54 family peptidase [Bacteroides sp. D22]
Length = 584
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 14/172 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ +++ VF+ IAS + SL L +GA L L G+WWR VT F+H G FH
Sbjct: 158 ILIDLNILVFIVMIASGVGIMSPSTLSL-LKWGADFGPLTLTGDWWRAVTCNFIHIGAFH 216
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 217 LLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLYG 276
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHL 394
+L + F ++ IAK+ +KA+L++ L F+ N +D AH+
Sbjct: 277 IFLAFLFFHR--IAKEQ-----RKALLTSILIFVGYNLVYGMKAGIDNAAHI 321
>gi|332157726|ref|YP_004423005.1| hypothetical protein PNA2_0084 [Pyrococcus sp. NA2]
gi|331033189|gb|AEC51001.1| hypothetical protein PNA2_0084 [Pyrococcus sp. NA2]
Length = 192
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 12/147 (8%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
+IN +L GEWWRL+T +F H G H L+ + L G + G F +++ +
Sbjct: 38 GQINYFVLTGEWWRLITAIFTHVGFIHFGLNIFWLFYLGMDLEGLVGTKRFLIVFFASAL 97
Query: 322 SGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GNL S P + G +G +F ++GA L + + R QKA+++ +
Sbjct: 98 VGNLLSLFTLPPNVISAGASGGLFGVVGA---------LLSIEGILRRNLQKALINAVIL 148
Query: 380 FIISNFGP-VDTWAHLGAAFTGIIYGF 405
F+I++ P V+ AH G TG++ G+
Sbjct: 149 FLINSIFPGVNAIAHFGGLITGLLIGY 175
>gi|300173053|ref|YP_003772219.1| membrane-associated serine protease [Leuconostoc gasicomitatum LMG
18811]
gi|299887432|emb|CBL91400.1| Membrane-associated serine protease [Leuconostoc gasicomitatum LMG
18811]
Length = 229
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 7/179 (3%)
Query: 227 ISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILV-GEWWRLVTPMFLHSG 285
ISI V + V VF E ++ G S+ + +GAK I V ++WRLVTP+FLH+G
Sbjct: 16 ISIFV-LTVLVFFAEFLIGRGQTDNG--SILVAFGAKWGPYIKVYDQYWRLVTPLFLHAG 72
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGTGPVFA 344
+ H+ + L GP +++G F +Y GGI GN+ S+L P +VG + +F
Sbjct: 73 VMHILTNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYLFAPLTVSVGASSALFG 132
Query: 345 IIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
+ G ++Y Q K M ++ +S S +D W H+G G+++
Sbjct: 133 MFGGLILYAVQFKHDSRIRAQGTMMGLFVVLNLMSGFFST--GIDMWGHIGGLIGGMMF 189
>gi|406837558|ref|ZP_11097152.1| hypothetical protein LvinD2_03024 [Lactobacillus vini DSM 20605]
Length = 244
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA+ N I+ GEWWRL TP+FLH ++H+A + AL+ G V + YG F F LIY G
Sbjct: 65 GARWNPDIIAGEWWRLFTPIFLHVTIYHIAFNMAALMYAGTIVEEVYGHFKFLLIYLFSG 124
Query: 321 ISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
SGNL S P + G + +F + + Q + K + + A++ +
Sbjct: 125 FSGNLISAFFKPNTISAGASTSLFGLFAVIALLQVVSG---FKHQFTELSKGAVVLIVAN 181
Query: 380 FIISNFGP-VDTWAHLGAAFTGII 402
+ + F P VD HLG G I
Sbjct: 182 LVFNLFMPSVDIAGHLGGLVGGAI 205
>gi|295085069|emb|CBK66592.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Bacteroides xylanisolvens XB1A]
Length = 584
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 14/172 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ +++ VF+ IAS + SL L +GA L L G+WWR VT F+H G FH
Sbjct: 158 ILIDLNILVFIVMIASGVGIMSPSTLSL-LKWGADFGPLTLTGDWWRAVTCNFIHIGAFH 216
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 217 LLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLYG 276
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHL 394
+L + F ++ IAK+ +KA+L++ L F+ N +D AH+
Sbjct: 277 IFLAFLFFHR--IAKEQ-----RKALLTSILIFVGYNLVYGMKAGIDNAAHI 321
>gi|336406188|ref|ZP_08586849.1| hypothetical protein HMPREF0127_04162 [Bacteroides sp. 1_1_30]
gi|335935437|gb|EGM97389.1| hypothetical protein HMPREF0127_04162 [Bacteroides sp. 1_1_30]
Length = 584
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 14/172 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ +++ VF+ IAS + SL L +GA L L G+WWR VT F+H G FH
Sbjct: 158 ILIDLNILVFIVMIASGVGIMSPSTLSL-LKWGADFGPLTLTGDWWRAVTCNFIHIGAFH 216
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 217 LLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLYG 276
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHL 394
+L + F ++ IAK+ +KA+L++ L F+ N +D AH+
Sbjct: 277 IFLAFLFFHR--IAKEQ-----RKALLTSILIFVGYNLVYGMKAGIDNAAHI 321
>gi|418710371|ref|ZP_13271142.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418725109|ref|ZP_13283785.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|409961491|gb|EKO25236.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|410769307|gb|EKR44549.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
Length = 514
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRLVT +F+H+G H+ + + L+ V G F ++Y
Sbjct: 359 LEWGANRRIETLAGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 418
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 419 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIM 471
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D AH+G +G + G + L Q G
Sbjct: 472 IVTFILTGLLWGLFGGIDNAAHIGGLVSGALSGII---LFQFG 511
>gi|194016002|ref|ZP_03054617.1| conserved membrane protein YdcA [Bacillus pumilus ATCC 7061]
gi|194012357|gb|EDW21924.1| conserved membrane protein YdcA [Bacillus pumilus ATCC 7061]
Length = 201
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRLVTP+FLH L H+ + +L F P + G F +IY G GNL ++
Sbjct: 56 GEWWRLVTPIFLHGSLTHILFNSMSLFLFAPALEHLLGKVRFLIIYLGAGFIGNLGTYWV 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L ++ + S+ + +S ++F+ SN +
Sbjct: 116 EPLEYVHVGASGAIFGLFGVYLYLVLFKPHMMDRGNSQVILTILAVSVIMTFVNSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFLTCPLVQLGDASSR 419
+ AHL G+I G L PL + R
Sbjct: 173 NIMAHL----FGLIGGMLLAPLTLFFHSKKR 199
>gi|418035808|ref|ZP_12674250.1| Serine endopeptidase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1519]
gi|354689374|gb|EHE89372.1| Serine endopeptidase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1519]
Length = 215
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 19/200 (9%)
Query: 255 SLPLLYGAKIN-ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFF 313
S+ L GA N +++ G+WWRL T FLH G+ H+A + + G +G + F
Sbjct: 26 SVLLEMGAMFNPAVVMEGQWWRLFTAQFLHIGIMHIASNAIMIYYIGQYAEPVFGHWRFL 85
Query: 314 LIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQK 371
LIY L G+ G+L +F + + G + +F + GA F++KD + + ++
Sbjct: 86 LIYLLSGVGGSLLTLAFGNDQAISAGASTALFGLFGAMTCAGFKDKD---NTLLSFLGRQ 142
Query: 372 AILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIR 430
A+ ++ ++ F P VD HLG TG + V LGDA+ + + G L
Sbjct: 143 ALALAVINLVLDVFMPDVDILGHLGGLITGALLA------VILGDATYKGYGKGGRLL-- 194
Query: 431 QYANPCKSLIVFTIFVIILG 450
LIV+ + ++ LG
Sbjct: 195 ----AAAGLIVYVVLILRLG 210
>gi|116292571|gb|ABJ97617.1| rhomboid-4 [synthetic construct]
Length = 796
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
LL G N + GE +RL M+LH G H+ + + + +G L++
Sbjct: 481 LLGGLNTNYIRNYGELYRLFWSMYLHGGFMHILFNVICQIQILWMIEPDWGSIRTGLLFF 540
Query: 318 LGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
+ G++GNL S + P T+G +G ++ +IGA Y + I + +F L
Sbjct: 541 ISGVTGNLLSAVCDPCGVTIGSSGSLYGLIGALFAYYIEYWKTIPRPCCVLIFM--FLVV 598
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
I+ FG D +AH+G G+++GF T V D
Sbjct: 599 MFGIIVGMFGYTDNYAHIGGCLGGVLFGFSTITTVSAAD 637
>gi|418327645|ref|ZP_12938790.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
gi|365232769|gb|EHM73752.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
Length = 234
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-L 329
GEW+RL++ MFLH H+ ++ +L FG V G + +IY + G+ GN S
Sbjct: 75 GEWYRLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSF 134
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
+T +VG +G +F +IG+ + + +K+ K + + + +L S +SN ++
Sbjct: 135 NTSTISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVVL-IGFSLFMSN---IN 190
Query: 390 TWAHLGAAFTGII 402
AHLG +G++
Sbjct: 191 IMAHLGGFISGVL 203
>gi|365851709|ref|ZP_09392132.1| peptidase, S54 family [Lactobacillus parafarraginis F0439]
gi|363716222|gb|EHL99633.1| peptidase, S54 family [Lactobacillus parafarraginis F0439]
Length = 211
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 10/153 (6%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GAK N LI GE+WRLV+P+F+H G H+ ++ L G V +G + F I+
Sbjct: 29 LTFGAKFNPLIRAGEYWRLVSPIFIHIGFTHILMNGITLYFIGQYVEMLFGHWRFLGIFL 88
Query: 318 LGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIY--QFQNKDLIAKDVSERMFQKAILS 375
GI GNL SF + + G + +F + GA+++ F N I +++ +L+
Sbjct: 89 TSGIVGNLASFAFSDSLSAGASTAIFGLFGAFMMLGESFSNNQAIV-SMAKTFLLFIVLN 147
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
A +S +D H+G G+I GFL
Sbjct: 148 IATDLFVSG---IDIAGHIG----GLIGGFLVA 173
>gi|50547561|ref|XP_501250.1| YALI0B23078p [Yarrowia lipolytica]
gi|49647116|emb|CAG83503.1| YALI0B23078p [Yarrowia lipolytica CLIB122]
Length = 611
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
G+WWR +TP+F+H+G+ H+ + +T G + K G +F IY GI G L +
Sbjct: 350 GQWWRFITPIFMHAGIIHIGFNMLLQMTLGADIEKQIGIIRYFFIYFACGIGGFLFGGNY 409
Query: 331 TPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
TP+ + G +G +F II L+ N + V R+ I+ +SF++ +
Sbjct: 410 TPDGIASTGASGSLFGIIAIDLLDLLFNWSIFRNPV--RILIIHIIEIVVSFVLGLLPGL 467
Query: 389 DTWAHLGAAFTGIIYG--FLTCPLVQLGDASS 418
D ++H+G G++ G L PL + + +S
Sbjct: 468 DNFSHIGGFIVGVLLGIAILRSPLKVVDEGTS 499
>gi|262409313|ref|ZP_06085856.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294644959|ref|ZP_06722693.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294805963|ref|ZP_06764830.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
gi|345509393|ref|ZP_08788992.1| hypothetical protein BSAG_03733 [Bacteroides sp. D1]
gi|229446228|gb|EEO52019.1| hypothetical protein BSAG_03733 [Bacteroides sp. D1]
gi|262352765|gb|EEZ01862.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292639680|gb|EFF57964.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294446845|gb|EFG15445.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
Length = 584
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 14/172 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ +++ VF+ IAS + SL L +GA L L G+WWR VT F+H G FH
Sbjct: 158 ILIDLNILVFIVMIASGVGIMSPSTLSL-LKWGADFGPLTLTGDWWRAVTCNFIHIGAFH 216
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 217 LLMNMYAFMYVGLLLEGLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLYG 276
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHL 394
+L + F ++ IAK+ +KA+L++ L F+ N +D AH+
Sbjct: 277 IFLAFLFFHR--IAKEQ-----RKALLTSILIFVGYNLVYGMKAGIDNAAHI 321
>gi|237832263|ref|XP_002365429.1| rhomboid-like protease TgROM2 [Toxoplasma gondii ME49]
gi|211963093|gb|EEA98288.1| rhomboid-like protease TgROM2 [Toxoplasma gondii ME49]
Length = 283
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 20/188 (10%)
Query: 227 ISILVSIDVAVFLFEIASPIRNSEFGFFSLP---LLYGAKINELILVGEWWRLVTPMFLH 283
I I+ + +AV++ +A+ + +E P +++GA I ELI VGE WRL+ P+FLH
Sbjct: 62 IIIISFVQIAVYIASLAAGLAPNEI-LAPTPQTLVMFGANIPELIRVGEIWRLICPLFLH 120
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLHTPEPTVGGTGP 341
LFH+ ++ W + G + + YG +Y G+ N+ S L + G +
Sbjct: 121 LNLFHILMNLWVQIRIGLTIEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTA 180
Query: 342 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF---IISNFGP-VDTWAHLGAA 397
VFA+IG Q LI + +R AI+S + +S+FG +D+ H+G
Sbjct: 181 VFALIGV----QLAELALIWHAIQDR--NSAIISVCICLFFVFVSSFGSQMDSVGHIG-- 232
Query: 398 FTGIIYGF 405
G++ GF
Sbjct: 233 --GLVMGF 238
>gi|157691227|ref|YP_001485689.1| serine peptidase [Bacillus pumilus SAFR-032]
gi|157679985|gb|ABV61129.1| possible S54 family unassigned serine peptidase [Bacillus pumilus
SAFR-032]
Length = 201
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL+TP+FLH L H+ + +L F P + G F +IY G GNL ++
Sbjct: 56 GEWWRLITPVFLHGSLTHILFNSMSLFLFAPALEHLLGKVRFLIIYLGAGFIGNLGTYWV 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L ++ + S+ + +S ++F+ SN +
Sbjct: 116 EPLEYVHVGASGAIFGLFGVYLYLVLFKPHMMDRGNSQVILTILAVSVIMTFVNSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFLTCPLVQLGDASSR 419
+ AHL G+I G L PL + + R
Sbjct: 173 NIMAHL----FGLIGGMLLAPLTLVFHSKKR 199
>gi|417643203|ref|ZP_12293263.1| peptidase, S54 family [Staphylococcus warneri VCU121]
gi|330685982|gb|EGG97605.1| peptidase, S54 family [Staphylococcus epidermidis VCU121]
Length = 405
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+RLVT MFLH H+ ++ +L FG V G + IY G
Sbjct: 190 GGLVHFNVVHGEWYRLVTSMFLHFNFEHILMNMLSLYIFGKIVESVLGSWKMLAIYLFAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
I GN S +T +VG +G +F +IG+ + +K + + + + IL LS
Sbjct: 250 IFGNFVSLSFNTTTISVGASGAIFGLIGSIFAILYLSKTFDKRVIGQLLIALVIL-IGLS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN ++ AHLG G++
Sbjct: 309 LFMSN---INVMAHLGGFIGGLL 328
>gi|374313630|ref|YP_005060060.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
gi|358755640|gb|AEU39030.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
Length = 225
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 36/196 (18%)
Query: 230 LVSIDVAVFLFEIASPIRNSE------------FGFFSLPLLYGAKINELILVGEWWRLV 277
L++I+V VF +AS + +E FG PL GA +WWRL+
Sbjct: 27 LIAINVLVFAAMVASGVSFTEPTALDVANWGGDFG----PLTVGAH--------QWWRLL 74
Query: 278 TPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS-FLHTPEPTV 336
T FLH G+ H+ + + L GP + ++G + LIY G+ G+L S ++H
Sbjct: 75 TSCFLHFGIIHIGFNMYVLFQIGPFIEMAFGRIRYLLIYFFAGLGGSLVSVWVHPMVVGA 134
Query: 337 GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN--FGPV----DT 390
G +G +F + GA + +N+ + V+ K+I +A F++ N +G + D
Sbjct: 135 GASGAIFGLYGAVFGFLLRNRRSLDPAVT-----KSIAKSAGIFVLYNVVYGSITRTTDL 189
Query: 391 WAHLGAAFTGIIYGFL 406
AH G TG + G L
Sbjct: 190 SAHFGGLVTGFVVGML 205
>gi|449551010|gb|EMD41974.1| hypothetical protein CERSUDRAFT_79578 [Ceriporiopsis subvermispora
B]
Length = 460
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFL 329
+W+R +TP+FLH+G+ H L+ A LT QV + G +F ++Y GI GN+ +F
Sbjct: 253 QWFRFITPIFLHAGIIHYLLNMLAQLTATAQVEREMGSISFLILYMASGIFGNVLGGNFS 312
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSE--RMFQKAILSTALSFIISNFGP 387
P+VG +G +F + + F + I + + M + ++ A+ FI
Sbjct: 313 LVGSPSVGASGAIFGTVAVAWVDLFAHWRYIYQPGRKLVYMLIELVIGIAVGFIPY---- 368
Query: 388 VDTWAHLGAAFTGIIYGFLTCPLV 411
VD +AH+G G++ G L P++
Sbjct: 369 VDNFAHIGGLVMGLLVGMLLYPII 392
>gi|333371980|ref|ZP_08463918.1| rhomboid protease GluP [Desmospora sp. 8437]
gi|332975161|gb|EGK12063.1| rhomboid protease GluP [Desmospora sp. 8437]
Length = 215
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 260 YGAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
+GA N +L+ GEWWRLVTP+FLH G+ H + ++L GPQ+ +G + F +Y L
Sbjct: 64 FGALENTALLIDGEWWRLVTPVFLHIGITHFLFNSFSLYLLGPQLEWLFGRWRFIALYLL 123
Query: 319 GGISGNL-TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
GI GNL T +L + G +G ++ ++G ++ + + D + +
Sbjct: 124 TGIMGNLATVYLGEVGISAGASGAIYGLLGVYVYLFLFRRGSMDPDTGKGLLAL----VG 179
Query: 378 LSFIISNFGP-VDTWAHLGAAFTGIIYGFLTC-PLVQ 412
++ +IS P ++ AHLG G++ GFL PL++
Sbjct: 180 INLVISILTPTINLTAHLG----GLVAGFLLAGPLLR 212
>gi|85858972|ref|YP_461174.1| rhomboid family protein [Syntrophus aciditrophicus SB]
gi|85722063|gb|ABC77006.1| rhomboid family protein [Syntrophus aciditrophicus SB]
Length = 289
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 95/218 (43%), Gaps = 23/218 (10%)
Query: 220 ETSNLYLISILVSIDVAVFLFEI---ASPIRNSEFGFFSLPLLYGAKINELIL------- 269
++ NL + +L+ I+VA ++ I S IR S F L LL + + L
Sbjct: 47 QSGNLQPVRLLIYINVAFYILSILFDPSAIRTS---FNPLTLLSPSNHSLFFLGATGTIP 103
Query: 270 ---VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT 326
G WW L++ FLH G+ H+ + AL G V YG F F +IYT+ GI+G L
Sbjct: 104 IDQYGRWWTLISASFLHGGILHIFFNMAALSQLGTFVFHEYGFFRFLIIYTITGIAGFLL 163
Query: 327 SFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
S+ T+G + + +IGA L Y + + + + ++
Sbjct: 164 SYAVGIPFTIGASASLCGLIGAILFYGKSRGGFYGETIYRQATGWVVGLVLFGLLVPG-- 221
Query: 387 PVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEE 424
++ WAH G GI+ GF L+ D S+ NS
Sbjct: 222 -INNWAHGGGLAAGILTGF----LLGYEDKSAENSLHR 254
>gi|225572886|ref|ZP_03781641.1| hypothetical protein RUMHYD_01077 [Blautia hydrogenotrophica DSM
10507]
gi|225039751|gb|EEG49997.1| peptidase, S54 family [Blautia hydrogenotrophica DSM 10507]
Length = 222
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 30/221 (13%)
Query: 198 RELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLF-EIASPIRNSEFGFFSL 256
RELR +D +R ++ ++ I+++V ++V VFL +++ N+E
Sbjct: 11 RELRQEDFMRERKKKFSIN----------IAMIV-LNVVVFLIVDLSGNSGNTEH----- 54
Query: 257 PLLYGAKINELIL-VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
L GA LI+ E++RL T MFLH G+ H+A + L G + ++ G + LI
Sbjct: 55 MLRCGAANAALIVEAKEYYRLFTSMFLHFGMAHLANNMLVLYVIGDNLERAVGKVKYLLI 114
Query: 316 YTLGGISGNLTS-FLHTPEPTV----GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ 370
Y G+ GN+ S +L E + G +G +F ++GA L N + + ++
Sbjct: 115 YLFSGLGGNILSCYLEYQEGALSVSAGASGAIFGVMGAMLYVLLANHGRLEDLTARQIVI 174
Query: 371 KAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
A S F S VD AH+G G+I GFL L+
Sbjct: 175 MAGFSLYFGFTSS---GVDNAAHVG----GLICGFLVAMLL 208
>gi|18977600|ref|NP_578957.1| hypothetical protein PF1228 [Pyrococcus furiosus DSM 3638]
gi|397651726|ref|YP_006492307.1| hypothetical protein PFC_05360 [Pyrococcus furiosus COM1]
gi|18893319|gb|AAL81352.1| hypothetical protein PF1228 [Pyrococcus furiosus DSM 3638]
gi|393189317|gb|AFN04015.1| hypothetical protein PFC_05360 [Pyrococcus furiosus COM1]
Length = 193
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 22/183 (12%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
SIL + V F++EI + F A+IN + +GE+WR++T +F+H G
Sbjct: 12 SILAFMIVVGFVYEIVVGFDKAIMQF--------AQINLYVYLGEFWRVITAIFIHMGYI 63
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTV---GGTGPVFA 344
H AL+ + L+ G + G F +++ G + GN+ S P P V G +G +FA
Sbjct: 64 HFALNLFWLIYLGMDLEGLLGSRKFIIVFFSGAVIGNILSLFVLP-PFVASGGASGGLFA 122
Query: 345 IIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIY 403
I+GA L + V + QKA+++ F+I++ P V+ AH G GI+
Sbjct: 123 IVGA---------LLAVEGVLRKNMQKALINALFLFLINSIFPGVNYVAHFGGLIVGILL 173
Query: 404 GFL 406
G++
Sbjct: 174 GYI 176
>gi|421876784|ref|ZP_16308338.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C10]
gi|372557462|emb|CCF24458.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C10]
Length = 229
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 8/176 (4%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGE-WWRLVTPMFLHSGLFH 288
L ++ VF+FE+ + ++ F + + GAK I + +WRL+TP+FLH+G+ H
Sbjct: 18 LFTVTTVVFIFELIASHGQTDNARFLVAV--GAKWGPDIAHNQAYWRLLTPVFLHAGIMH 75
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGTGPVFAIIG 347
+ + L GP +++G + F ++Y GGI GN+ S+L +P +VG + +FA+
Sbjct: 76 IVTNMLTLWFVGPIAERAFGSWRFLMLYAFGGIVGNIFSYLLSPLAISVGASSALFAMFA 135
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGII 402
++Y + +D F +L L+ P +D W H+G G++
Sbjct: 136 GLILYGVRYRDNPTIRAQGATF---LLFVVLNLFSGLLAPTIDLWGHIGGLIGGMM 188
>gi|333398096|ref|ZP_08479909.1| membrane-associated serine protease [Leuconostoc gelidum KCTC 3527]
gi|406599712|ref|YP_006745058.1| membrane-associated serine protease [Leuconostoc gelidum JB7]
gi|406371247|gb|AFS40172.1| membrane-associated serine protease [Leuconostoc gelidum JB7]
Length = 229
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 7/179 (3%)
Query: 227 ISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELI-LVGEWWRLVTPMFLHSG 285
ISI V + V VF E ++ G SL + +GAK I ++WRLVTP+FLH+G
Sbjct: 16 ISIFV-LTVLVFFAEFLIGRGQTDNG--SLLVAFGAKWGPYIKAYDQYWRLVTPIFLHAG 72
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGTGPVFA 344
+ H+ + L GP +++G F +Y GGI GN+ S+L P +VG + +F
Sbjct: 73 VMHILTNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYLFAPLTVSVGASSALFG 132
Query: 345 IIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
+ G ++Y Q K M ++ +S S +D W H+G G+++
Sbjct: 133 MFGGLILYAIQFKHDPRIRAQGTMMGLFVVLNLMSGFFST--GIDMWGHIGGLIGGMMF 189
>gi|104774327|ref|YP_619307.1| hypothetical protein Ldb1479 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103423408|emb|CAI98279.1| Conserved hypothetical membrane protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 215
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 19/205 (9%)
Query: 255 SLPLLYGAKIN-ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFF 313
S+ L GA N +++ G+WWRL T FLH G+ H+A + + G +G + F
Sbjct: 26 SVLLKMGAMFNPAVVMEGQWWRLFTAQFLHIGIMHIASNAIMIYYIGQYAEPVFGHWRFL 85
Query: 314 LIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQK 371
LIY L G+ G+L +F + + G + +F + GA F++KD + + ++
Sbjct: 86 LIYLLSGVGGSLLTLAFGNDQAISAGASTALFGLFGAMTCAGFKDKD---NTLLSFLGRQ 142
Query: 372 AILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIR 430
A+ ++ ++ F P VD H+G TG + V LGDA+ + + G L
Sbjct: 143 ALALAVINLVLDVFMPDVDILGHVGGLITGALLA------VILGDATYKGYGKGGRLL-- 194
Query: 431 QYANPCKSLIVFTIFVIILGSFIFV 455
LIV+ + ++ LG + V
Sbjct: 195 ----AAAGLIVYVVLILRLGMVVTV 215
>gi|82540667|ref|XP_724634.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23479343|gb|EAA16199.1| Arabidopsis thaliana F6D8.20 [Plasmodium yoelii yoelii]
Length = 659
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 3/158 (1%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
L G N + GE +RL M+LH GL H+ + + + +G ++ +
Sbjct: 346 LGGLNTNYIRNYGEIYRLFWSMYLHGGLMHIIFNVICQIQILWMIEPDWGFLRTLFLFFI 405
Query: 319 GGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
GI+GNL S + P T+G +G ++ +IGA Y + I + +F IL
Sbjct: 406 SGITGNLLSAVCDPCGVTIGSSGSLYGLIGALFAYYVEYWKTIPRPCCVIIFM--ILVVI 463
Query: 378 LSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
I FG D +AH+G GI+YGF T V D
Sbjct: 464 FGIFIGMFGYTDNYAHIGGCLGGILYGFATITTVSSAD 501
>gi|212224193|ref|YP_002307429.1| integral membrane protein [Thermococcus onnurineus NA1]
gi|212009150|gb|ACJ16532.1| integral membrane protein [Thermococcus onnurineus NA1]
Length = 202
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 26/184 (14%)
Query: 230 LVSIDVAVFLFEI---ASPIRNSEFGFFSLPLLYGAKI---NELILVGEWWRLVTPMFLH 283
L I+V V++FE +PI S+ +L A+I N +L G WW+L T MF+H
Sbjct: 17 LFVINVVVYIFEAILSGNPID------ISIEVL--ARIGQWNYAVLNGAWWQLFTAMFVH 68
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGP 341
G+ H+ + + LL G Q+ + +G Y G+ GNL + P ++ G +G
Sbjct: 69 VGILHIVFNMYFLLMLGSQLERLFGGRVLVFTYLAAGLVGNLVTLFLLPPNSISAGASGA 128
Query: 342 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTG 400
+F I+G ++ ++ ++ Q ++ + F+I++ P V+ +AHLG TG
Sbjct: 129 LFGIVGVLIMVS----GILGGNI-----QSVFVNAFILFLINSMFPGVNAYAHLGGLITG 179
Query: 401 IIYG 404
I+ G
Sbjct: 180 ILLG 183
>gi|423216154|ref|ZP_17202679.1| hypothetical protein HMPREF1074_04211 [Bacteroides xylanisolvens
CL03T12C04]
gi|392691005|gb|EIY84256.1| hypothetical protein HMPREF1074_04211 [Bacteroides xylanisolvens
CL03T12C04]
Length = 584
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 14/172 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ +++ VF+ IAS + SL L +GA L L G+WWR VT F+H G FH
Sbjct: 158 ILIDLNLLVFIVMIASGVGIMSPSTLSL-LKWGADFGPLTLTGDWWRAVTCNFIHIGAFH 216
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 217 LLMNMYAFMYVGLLLEGLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLYG 276
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHL 394
+L + F ++ IAK+ +KA+L++ L F+ N +D AH+
Sbjct: 277 IFLAFLFFHR--IAKEQ-----RKALLTSILIFVGYNLVYGMKAGIDNAAHI 321
>gi|417784544|ref|ZP_12432250.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|409952361|gb|EKO06874.1| peptidase, S54 family [Leptospira interrogans str. C10069]
Length = 514
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y
Sbjct: 359 LEWGANRRIETLAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 418
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 419 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIM 471
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D AH+G +G + G + L Q G
Sbjct: 472 IVTFILTGLLWGLFGGIDNAAHIGGLVSGTLSGII---LFQFG 511
>gi|358068283|ref|ZP_09154750.1| hypothetical protein HMPREF9333_01631 [Johnsonella ignava ATCC
51276]
gi|356693542|gb|EHI55216.1| hypothetical protein HMPREF9333_01631 [Johnsonella ignava ATCC
51276]
Length = 206
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 15/178 (8%)
Query: 230 LVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELILVG-EWWRLVTPMFLHSGLF 287
L+++++ FLF E +++ L YGA+ ++ G E+WRL+T MF+H G+
Sbjct: 12 LIALNIVFFLFLETVGSSEDAD-----TMLRYGAEFTPYVIEGKEYWRLLTSMFMHFGID 66
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH-----TPEPTVGGTGPV 342
H+A + L G + ++ G + + Y + GI N+ S + G +G V
Sbjct: 67 HIANNMIVLFMIGDNLERALGHVKYLIFYLICGIGANIVSLFFEMLTGNYSVSAGASGAV 126
Query: 343 FAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTG 400
F ++G L N+ + + S+RM +LS FI + VD AH+G A G
Sbjct: 127 FGVMGGLLWAVIANRGRLEELTSQRMAIFIVLSLYYGFIST---GVDNAAHVGGAVIG 181
>gi|238061764|ref|ZP_04606473.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
gi|237883575|gb|EEP72403.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
Length = 303
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 10/135 (7%)
Query: 268 ILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327
I+ GEW+RLVT MFLH G+ H+ L+ WAL G + + GP F +Y + G GN+ +
Sbjct: 134 IVQGEWYRLVTAMFLHYGVVHLLLNMWALWVLGRSLEANLGPLRFLALYLIAGFGGNVAA 193
Query: 328 FLHTPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF 385
+L + E T G + +F + A ++ + + + +D+S + +L L F ++
Sbjct: 194 YLFSAENATTAGASTAIFGLFAALIVIERR----MGRDISSVL---PVLVINLVFTLTVP 246
Query: 386 GPVDTWAHLGAAFTG 400
G + HLG TG
Sbjct: 247 G-ISIPGHLGGLVTG 260
>gi|443925758|gb|ELU44527.1| rhomboid family protein [Rhizoctonia solani AG-1 IA]
Length = 1236
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 26/185 (14%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFL 329
+W+R +TP+FLH+G+ H AL+ +A LT QV + G F ++Y GI GN+ +F
Sbjct: 603 QWFRFITPIFLHAGIIHFALNMFAQLTLSAQVEREMGSGAFLILYASAGIFGNVLGGNFA 662
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAK-DVSERMFQK-------AILSTALSFI 381
P+VG +G +F + + DL+A + R +K I+ AL F+
Sbjct: 663 LVGVPSVGASGAIFGTVAVMWV------DLLAHWKIEYRPGRKLAMLCVDLIIGVALGFV 716
Query: 382 ISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIV 441
VD +AHLG G++ + P++ S + + I I + A ++++
Sbjct: 717 PG----VDNFAHLGGFLMGLLTAIVLYPVI------STTKRHKAIMWICRLAMIPVAVVL 766
Query: 442 FTIFV 446
F + +
Sbjct: 767 FVVLI 771
>gi|418701499|ref|ZP_13262424.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410759581|gb|EKR25793.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
Length = 514
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y
Sbjct: 359 LEWGANRRIETLAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 418
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 419 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIM 471
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D AH+G +G + G + L Q G
Sbjct: 472 IVTFILTGLLWGLFGGIDNAAHIGGLVSGTLSGII---LFQFG 511
>gi|418029655|ref|ZP_12668189.1| Serine endopeptidase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1632]
gi|354689534|gb|EHE89520.1| Serine endopeptidase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1632]
Length = 209
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 19/200 (9%)
Query: 255 SLPLLYGAKIN-ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFF 313
S+ L GA N +++ G+WWRL T FLH G+ H+A + + G +G + F
Sbjct: 20 SVLLKMGAMFNPAVVMEGQWWRLFTAQFLHIGIMHIASNAIMIYYIGQYAEPVFGHWRFL 79
Query: 314 LIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQK 371
LIY L G+ G+L +F + + G + +F + GA F++KD + + ++
Sbjct: 80 LIYLLSGVGGSLLTLAFGNDQAISAGASTALFGLFGAMTCAGFKDKD---NTLLSFLGRQ 136
Query: 372 AILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIR 430
A+ ++ ++ F P VD HLG TG + V LGDA+ + + G L
Sbjct: 137 ALALAVINLVLDVFMPDVDILGHLGGLITGALLA------VILGDATYKGYGKGGRLL-- 188
Query: 431 QYANPCKSLIVFTIFVIILG 450
LIV+ + ++ LG
Sbjct: 189 ----AAVGLIVYVVLILRLG 204
>gi|452974258|gb|EME74079.1| transmembrane protein YdcA [Bacillus sonorensis L12]
Length = 199
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFL 329
GEWWRLVTP+F+H+G H+ + +L F P + + G F +Y G+ GN+ T F+
Sbjct: 56 GEWWRLVTPVFIHAGFSHLLFNSMSLFLFAPALERMMGKLRFLAVYIGSGVIGNIGTYFI 115
Query: 330 HTPEPT-VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
PE T VG +G +F + G +L K L+ S+ + +S ++FI N +
Sbjct: 116 EPPEYTHVGASGAIFGLFGVYLYMVLFRKGLMDTANSQIIVTILAISILMTFINYN---I 172
Query: 389 DTWAHLGAAFTGI 401
+ AH+ G+
Sbjct: 173 NIMAHIFGLLGGL 185
>gi|417772121|ref|ZP_12420011.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|418680537|ref|ZP_13241786.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418703562|ref|ZP_13264446.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418715819|ref|ZP_13275930.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|421118289|ref|ZP_15578634.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|400327895|gb|EJO80135.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|409946078|gb|EKN96092.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|410010137|gb|EKO68283.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410766698|gb|EKR37381.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410788320|gb|EKR82042.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|455668108|gb|EMF33357.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Fox 32256]
Length = 514
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y
Sbjct: 359 LEWGANRRIETLAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 418
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 419 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIM 471
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D AH+G +G + G + L Q G
Sbjct: 472 IVTFILTGLLWGLFGGIDNAAHIGGLVSGTLSGII---LFQFG 511
>gi|421128003|ref|ZP_15588221.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421133348|ref|ZP_15593496.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410022356|gb|EKO89133.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410434470|gb|EKP83608.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
Length = 514
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y
Sbjct: 359 LEWGANRRIETLAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 418
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 419 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIM 471
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D AH+G +G + G + L Q G
Sbjct: 472 IVTFILTGLLWGLFGGIDNAAHIGGLVSGTLSGII---LFQFG 511
>gi|422022178|ref|ZP_16368686.1| hypothetical protein OO7_06384 [Providencia sneebia DSM 19967]
gi|414096671|gb|EKT58327.1| hypothetical protein OO7_06384 [Providencia sneebia DSM 19967]
Length = 287
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 29/210 (13%)
Query: 226 LISILVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
L S LV +++ ++ +++ ASP+ + E LL+GA + +L L G+WWR M LH
Sbjct: 26 LTSGLVLLNIVIYFYQLHFASPLDSRENNL----LLFGANVYQLSLTGDWWRYPISMLLH 81
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS-----FLHTPEPT--- 335
S H+A + AL G + ++YG IY + GI L S + +PT
Sbjct: 82 SNGVHLAFNSLALFVIGIECERNYGKSKLLAIYFISGIGAALFSAYWQYYEDINDPTLTD 141
Query: 336 --------VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-- 385
VG +G + + A +IY +Q + + + QK +L L I+
Sbjct: 142 NMVYITVGVGASGAIMGLAAASVIYLYQAIRVPNINPTIHAQQKRLLYNILGMIVLTLIS 201
Query: 386 ---GPVDTWAHLGAAFTG--IIYGFLTCPL 410
VD AH+G A G I G++ P+
Sbjct: 202 GLQAGVDNAAHIGGASIGALISLGYIFIPV 231
>gi|268590263|ref|ZP_06124484.1| rhomboid protease AarA [Providencia rettgeri DSM 1131]
gi|291314547|gb|EFE55000.1| rhomboid protease AarA [Providencia rettgeri DSM 1131]
Length = 293
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 41/214 (19%)
Query: 233 IDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVA 290
+++ V+ +++ A+P+ + E LL+GA + +L L G+WWR M LHSG H+A
Sbjct: 29 LNIVVYFYQLNYAAPLGSQENNL----LLFGANVYQLSLTGDWWRYPVSMVLHSGGMHLA 84
Query: 291 LSCWALLTFGPQVCKSYGPFTFFLIYTLGGI----------------------SGNLTSF 328
L+ AL G + ++YG F IY GI S N +
Sbjct: 85 LNTLALFVIGIECERTYGKFRMLAIYLFSGIGAAFFSAYWQYSEAINAAANRASMNAWNS 144
Query: 329 LHTPEPTV------GGTGPVFAIIGAWLIYQFQ-----NKDLIAKDVSERMFQKAILSTA 377
L+ P+ TV G +G + + A +IY + N L ++ +R I A
Sbjct: 145 LYLPDNTVYITVGIGASGAIMGLAAASVIYLLKGINNPNLSLEERNQLKRPLYNIIGMIA 204
Query: 378 LSFIISNFGPVDTWAHLGAAFTG-IIYG-FLTCP 409
L+ I +D AH+G A G +I G F+ P
Sbjct: 205 LTLINGLQSGIDNAAHIGGAVLGAVISGAFVLAP 238
>gi|380488088|emb|CCF37613.1| rhomboid family protein [Colletotrichum higginsianum]
Length = 572
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 10/158 (6%)
Query: 252 GFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFT 311
GF +P IN+ +W+R +TP+FLH+GL H+ + +T G ++ + G
Sbjct: 313 GFGGVPEPTYTDINQSPEPNQWFRFITPIFLHAGLIHIGFNLLLQMTIGKEMEIAIGSIR 372
Query: 312 FFLIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVSE 366
FFL+Y GI GN+ ++ + G +G +F +I L+Y ++++ KD+
Sbjct: 373 FFLVYVSAGIFGNVMGANYAGVMAASTGASGALFGVIALTLLDLLYSWKDRRSPVKDL-- 430
Query: 367 RMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYG 404
MF +L +SF++ +D +AH+G G+ G
Sbjct: 431 -MF--ILLDIVISFVLGLLPGLDNFAHIGGFLMGLALG 465
>gi|418689558|ref|ZP_13250679.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|418729718|ref|ZP_13288265.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
gi|400361237|gb|EJP17204.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|410775896|gb|EKR55887.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
Length = 514
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y
Sbjct: 359 LEWGANRRIETLAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 418
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 419 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIM 471
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D AH+G +G + G + L Q G
Sbjct: 472 IVTFILTGLLWGLFGGIDNAAHIGGLVSGTLSGII---LFQFG 511
>gi|150020441|ref|YP_001305795.1| rhomboid family protein [Thermosipho melanesiensis BI429]
gi|149792962|gb|ABR30410.1| Rhomboid family protein [Thermosipho melanesiensis BI429]
Length = 223
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
L LL+GA+ L+ G+W+R+VT MF+H G H+ + +AL G V YG F
Sbjct: 33 LYLLFGAQYGPLVSSGQWYRIVTAMFVHGGFIHLVFNMYALYFLGRIVENVYGTDKFLFF 92
Query: 316 YTLGGISGNL-TSFLHTPEPTVGGTGPVFAIIGAWLIYQF-QNKDLIAKDVSERMFQKAI 373
Y GI GNL T F + +VG +G +F ++G F ++ K ++ F I
Sbjct: 93 YFSTGIIGNLATQFFYYNSFSVGASGAIFGLVGVLFAAGFRRDTPYTLKPITGTAFLPMI 152
Query: 374 L-STALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
L + L FI + ++ AHLG +G+ G+
Sbjct: 153 LVNIFLGFIPGS--NINNAAHLGGFLSGMALGYF 184
>gi|221502248|gb|EEE27986.1| peptidase, S54 family protein [Toxoplasma gondii VEG]
Length = 283
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 20/188 (10%)
Query: 227 ISILVSIDVAVFLFEIASPIRNSEFGFFSLP---LLYGAKINELILVGEWWRLVTPMFLH 283
I I+ + +AV++ +A+ + +E P +++GA I ELI VGE WRL+ P+FLH
Sbjct: 62 IIIISFVQIAVYIASLAAGLAPNEI-LAPTPQTLVMFGANIPELIRVGEIWRLICPLFLH 120
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLHTPEPTVGGTGP 341
LFH+ ++ W + G + + YG +Y G+ N+ S L + G +
Sbjct: 121 LNLFHILMNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTA 180
Query: 342 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF---IISNFG-PVDTWAHLGAA 397
VFA+IG Q LI + +R AI+S + +S+FG +D+ H+G
Sbjct: 181 VFALIGV----QLAELALIWHAIQDR--NSAIISVCICLFFVFVSSFGRQMDSVGHIG-- 232
Query: 398 FTGIIYGF 405
G++ GF
Sbjct: 233 --GLVMGF 238
>gi|74786305|sp|Q695T9.1|RHBL2_TOXGO RecName: Full=Rhomboid-like protease 2
gi|47500377|gb|AAT29066.1| rhomboid-like protease 2 [Toxoplasma gondii]
Length = 283
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 20/188 (10%)
Query: 227 ISILVSIDVAVFLFEIASPIRNSEFGFFSLP---LLYGAKINELILVGEWWRLVTPMFLH 283
I I+ + +AV++ +A+ + +E P +++GA I ELI VGE WRL+ P+FLH
Sbjct: 62 IIIISFVQIAVYIASLAAGLAPNEI-LAPTPQTLVMFGANIPELIRVGEIWRLICPLFLH 120
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLHTPEPTVGGTGP 341
LFH+ ++ W + G + + YG +Y G+ N+ S L + G +
Sbjct: 121 LNLFHILMNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTA 180
Query: 342 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF---IISNFGP-VDTWAHLGAA 397
VFA+IG Q LI + +R AI+S + +S+FG +D+ H+G
Sbjct: 181 VFALIGV----QLAELALIWHAIQDR--NSAIISVCICLFFVFVSSFGSHMDSVGHIG-- 232
Query: 398 FTGIIYGF 405
G++ GF
Sbjct: 233 --GLVMGF 238
>gi|407980116|ref|ZP_11160914.1| serine peptidase [Bacillus sp. HYC-10]
gi|407413170|gb|EKF34898.1| serine peptidase [Bacillus sp. HYC-10]
Length = 201
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRLVTP+FLH L H+ + +L F P + G F LIY G GNL ++
Sbjct: 56 GEWWRLVTPIFLHGSLTHILFNSMSLFLFAPALESLLGKVRFLLIYIGAGFIGNLGTYWV 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L ++ + S+ + +S ++F+ SN +
Sbjct: 116 EPLEYVHVGASGAIFGLFGVYLYLVLFKPHMMDRGNSQVILTILGVSVIMTFVNSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFLTCPLVQLGDASSR 419
+ AHL G+I G + P+ + R
Sbjct: 173 NIMAHL----FGLIGGMILAPITLFFHSKKR 199
>gi|375308022|ref|ZP_09773309.1| rhomboid family protein [Paenibacillus sp. Aloe-11]
gi|375080353|gb|EHS58574.1| rhomboid family protein [Paenibacillus sp. Aloe-11]
Length = 207
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGA INE + WR V+ +FLH+G H+ + +A+L F P + + G + L+Y +
Sbjct: 48 YGALINEAPFTDQLWRYVSAIFLHAGFDHLLFNSFAILVFAPPLERLLGSLRYVLLYLVT 107
Query: 320 GISGNLTSFLH---TPEPT--VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL 374
GI GN+ S H E T VG +G ++ I GA+L + + + ++
Sbjct: 108 GIVGNVMSIAHYNMVAETTVSVGASGAIYGIYGAFLYVALFQRSFMDDASRKTLYTLLGF 167
Query: 375 STALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRN 420
SF ++N ++ AH G +G FL +V+L R+
Sbjct: 168 GILFSFAVAN---INWTAHFGGLLSGF---FLYGLMVRLTGQRKRH 207
>gi|429327760|gb|AFZ79520.1| hypothetical protein BEWA_023690 [Babesia equi]
Length = 492
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEW+RLV MFLH G H+A + + + V +G + F+++ + GI GNL S +
Sbjct: 160 GEWFRLVWSMFLHGGWMHIAFNVCSQVQILWIVEPDWGFWRTFILFFISGIGGNLMSAVL 219
Query: 331 TP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
P TVG +G ++ + GA + Y + + + + +F I+S + + G +D
Sbjct: 220 DPCGVTVGSSGALYGLYGALIPYCIEYWNTLPHPIFIIIF--LIVSIFVGLLTGLSGYID 277
Query: 390 TWAHLGAAFTGIIYGFLTCPLVQLGD 415
+AHLG G+++GF T V + D
Sbjct: 278 NYAHLGGCMFGLLWGFTTIRSVSIFD 303
>gi|117927224|ref|YP_871775.1| rhomboid family protein [Acidothermus cellulolyticus 11B]
gi|117647687|gb|ABK51789.1| Rhomboid family protein [Acidothermus cellulolyticus 11B]
Length = 287
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 18/188 (9%)
Query: 217 RTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYG-AKINELILVGEWWR 275
R ++T+ YL L++I+ VFL E SP E + +P G A + GE++R
Sbjct: 71 RPQQTAVTYL---LIAINAVVFLLEQVSP--RFELRYALIPGETGFAHPYAGVAGGEFYR 125
Query: 276 LVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE-- 333
L+T MFLH+ + H+ + WALL G + G F ++Y L G+ G+ +L P
Sbjct: 126 LITAMFLHASVLHIVFNMWALLVVGAPLEALLGRLRFLVLYFLAGLGGSTAVYLFAPRGS 185
Query: 334 PTVGGTGPVFAIIGAWLIYQFQ-NKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
T+G +G +F + A ++ + N D+ + +++ AL+F++S V
Sbjct: 186 ATLGASGAIFGLFAALFVFGRRLNFDI------RPIGLVIVINLALTFVLSG---VSWQG 236
Query: 393 HLGAAFTG 400
H+G +G
Sbjct: 237 HIGGLLSG 244
>gi|68071399|ref|XP_677613.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56497796|emb|CAH98853.1| conserved hypothetical protein [Plasmodium berghei]
Length = 490
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 3/150 (2%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
L G N + GE +RL M+LH GL H+ + + + +G ++ +
Sbjct: 178 LGGLNTNYIRNYGEIYRLFWSMYLHGGLMHIVFNVICQIQILWMIEPDWGFLRTLFLFFI 237
Query: 319 GGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
GI+GNL S + P T+G +G ++ +IGA Y + I + +F IL
Sbjct: 238 SGITGNLLSAVCDPCGVTIGSSGSLYGLIGALFAYYVEYWKTIPRPCCVIIFM--ILVVI 295
Query: 378 LSFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
I FG D +AH+G GI+YGF T
Sbjct: 296 FGIFIGMFGYTDNYAHIGGCLGGILYGFAT 325
>gi|301300052|ref|ZP_07206273.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852350|gb|EFK80013.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 220
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK + I+ G++WRL+TPMF+H GL H+ ++ L G + +G F +IY +
Sbjct: 41 FGAKYSPYIINGQYWRLITPMFIHIGLQHLLINMITLYFLGTLLENIFGKTRFLIIYLVS 100
Query: 320 GISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
GI GN+ SF + + G + +F + G++L+ + + M ++ L L
Sbjct: 101 GICGNIASFAFNFSSISAGASTALFGMFGSFLM---LGESFRRNPYLQTMSRQFFLLVIL 157
Query: 379 SFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
+ FG D HLG +G + G++
Sbjct: 158 NIFFGMFGNSDLAGHLGGLVSGFLLGYVV 186
>gi|148269479|ref|YP_001243939.1| rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170288153|ref|YP_001738391.1| rhomboid family protein [Thermotoga sp. RQ2]
gi|281411803|ref|YP_003345882.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
gi|147735023|gb|ABQ46363.1| Rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170175656|gb|ACB08708.1| Rhomboid family protein [Thermotoga sp. RQ2]
gi|281372906|gb|ADA66468.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
Length = 235
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
L L YGA+ + G+W+RL+T +F+H G+ H+ + +AL FG V YG F +
Sbjct: 37 LLLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVG 96
Query: 316 YTLGGISGNL-TSFLHTPEPTVGGTGPVFAIIGAWLIYQF-QNKDLIAKDVSERMFQKAI 373
Y GI GNL T + +VG +G +F +IG F ++ K V+ ++
Sbjct: 97 YFFTGIVGNLATHVFYHDTISVGASGAIFGLIGILFAAGFRKDTPFFMKPVT----GMSL 152
Query: 374 LSTALSFIISNFGP---VDTWAHLGAAFTGIIYGFLTCPL 410
L L ++ F P ++ AHLG +G++ G+ P
Sbjct: 153 LPIILINVVYGFLPGTNINNAAHLGGFLSGMLLGYTMRPF 192
>gi|15643350|ref|NP_228394.1| hypothetical protein TM0584 [Thermotoga maritima MSB8]
gi|418045242|ref|ZP_12683338.1| Rhomboid family protein [Thermotoga maritima MSB8]
gi|4981102|gb|AAD35669.1|AE001733_6 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678324|gb|EHA61471.1| Rhomboid family protein [Thermotoga maritima MSB8]
Length = 235
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
L L YGA+ + G+W+RL+T +F+H G+ H+ + +AL FG V YG F +
Sbjct: 37 LLLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVG 96
Query: 316 YTLGGISGNL-TSFLHTPEPTVGGTGPVFAIIGAWLIYQF-QNKDLIAKDVSERMFQKAI 373
Y GI GNL T + +VG +G +F +IG F ++ K V+ ++
Sbjct: 97 YFFTGIVGNLATHVFYHDTISVGASGAIFGLIGILFAAGFRKDTPFFMKPVT----GVSL 152
Query: 374 LSTALSFIISNFGP---VDTWAHLGAAFTGIIYGFLTCPL 410
L L ++ F P ++ AHLG +G++ G+ P
Sbjct: 153 LPIILINVVYGFLPGTNINNAAHLGGFLSGMLLGYTMSPF 192
>gi|116514421|ref|YP_813327.1| membrane-associated serine protease [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116093736|gb|ABJ58889.1| Membrane-associated serine protease [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 223
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 255 SLPLLYGAKIN-ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFF 313
S+ L GA N +++ G+WWRL T FLH G+ H+A + + G +G + F
Sbjct: 34 SVLLKMGAMFNPAVVMEGQWWRLFTAQFLHIGIMHIASNAIMIYYIGQYAEPVFGHWRFL 93
Query: 314 LIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQK 371
LIY L G+ G+L +F + + G + +F + G F++KD + + ++
Sbjct: 94 LIYLLSGVGGSLLTLAFGNDQAISAGASTALFGLFGPMTCAGFKDKD---NTLLSFLGRQ 150
Query: 372 AILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIR 430
A+ ++ ++ F P VD HLG TG + V LGDA+ + + G L
Sbjct: 151 ALALAVINLVLDVFMPDVDILGHLGGLITGALLA------VILGDATYKGYGKGGRLL-- 202
Query: 431 QYANPCKSLIVFTIFVIILG 450
LIV+ + ++ LG
Sbjct: 203 ----AAVGLIVYVVLILRLG 218
>gi|189207869|ref|XP_001940268.1| rhomboid family membrane protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976361|gb|EDU42987.1| rhomboid family membrane protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 542
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+WWR +TP+FLH+GL H+ + T G + K GP F L+Y GI G + +
Sbjct: 265 QWWRFITPIFLHAGLIHIGFNMLLQWTLGRDMEKEIGPLRFLLVYFSAGIFGFVLGGNYA 324
Query: 332 PE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
PE +VG +G +F I+ ++ N V + +F +L A++F+I +D
Sbjct: 325 PEGLTSVGCSGSLFGILALTMLDLLYNWSTRRSPVKDLLF--LLLDMAIAFVIGLLPGLD 382
Query: 390 TWAHLGAAFTGIIYG 404
++H+G G++ G
Sbjct: 383 NFSHIGGFCMGLVLG 397
>gi|333445938|ref|ZP_08480880.1| membrane-associated serine protease [Leuconostoc inhae KCTC 3774]
Length = 174
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
++WRLVTP+FLH+G+ H+ + L GP +++G F +Y GGI GN+ S+L
Sbjct: 4 QYWRLVTPLFLHAGVMHILTNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYLFA 63
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P +VG + +F + G ++Y Q K M ++ +S S +D
Sbjct: 64 PLTVSVGASSALFGMFGGLILYAVQFKHDSRIRAQGTMMGLFVVLNLMSGFFST--GIDM 121
Query: 391 WAHLGAAFTGIIY 403
W H+G G+++
Sbjct: 122 WGHIGGLIGGMMF 134
>gi|227890613|ref|ZP_04008418.1| S54 family peptidase [Lactobacillus salivarius ATCC 11741]
gi|417788071|ref|ZP_12435754.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
salivarius NIAS840]
gi|417810486|ref|ZP_12457165.1| S54 family peptidase [Lactobacillus salivarius GJ-24]
gi|418961160|ref|ZP_13513047.1| rhomboid family integral membrane protein [Lactobacillus salivarius
SMXD51]
gi|227867551|gb|EEJ74972.1| S54 family peptidase [Lactobacillus salivarius ATCC 11741]
gi|334308248|gb|EGL99234.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
salivarius NIAS840]
gi|335349282|gb|EGM50782.1| S54 family peptidase [Lactobacillus salivarius GJ-24]
gi|380344827|gb|EIA33173.1| rhomboid family integral membrane protein [Lactobacillus salivarius
SMXD51]
Length = 220
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK + I+ G++WRL+TPMF+H GL H+ ++ L G + +G F +IY +
Sbjct: 41 FGAKYSPYIINGQYWRLITPMFIHIGLQHLLINMITLYFLGTLLENIFGKTRFLIIYLVS 100
Query: 320 GISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
GI GN+ SF + + G + +F + G++L+ + + M ++ L L
Sbjct: 101 GICGNIASFAFNFSSISAGASTALFGMFGSFLM---LGESFRRNPYLQTMSRQFFLLVIL 157
Query: 379 SFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
+ FG D HLG +G + G++
Sbjct: 158 NIFFGMFGNSDLTGHLGGLVSGFLLGYVV 186
>gi|90961526|ref|YP_535442.1| rhomboid family integral membrane protein [Lactobacillus salivarius
UCC118]
gi|385840241|ref|YP_005863565.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
gi|90820720|gb|ABD99359.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius UCC118]
gi|300214362|gb|ADJ78778.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
Length = 220
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAK + I+ G++WRL+TPMF+H GL H+ ++ L G + +G F +IY +
Sbjct: 41 FGAKYSPYIINGQYWRLITPMFIHIGLQHLLINMITLYFLGTLLENIFGKTRFLIIYLVS 100
Query: 320 GISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
GI GN+ SF + + G + +F + G++L+ + + M ++ L L
Sbjct: 101 GICGNIASFAFNFSSISAGASTALFGMFGSFLM---LGESFRRNPYLQTMSRQFFLLVIL 157
Query: 379 SFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
+ FG D HLG +G + G++
Sbjct: 158 NIFFGMFGNSDLAGHLGGLVSGFLLGYVV 186
>gi|421879273|ref|ZP_16310744.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C11]
gi|390446828|emb|CCF26864.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C11]
Length = 229
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 8/176 (4%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGE-WWRLVTPMFLHSGLFH 288
L ++ VF+FE+ + ++ F + + GAK I + +WRL+TP+FLH+G+ H
Sbjct: 18 LFTVTTVVFIFELIASHGQTDNARFLVAV--GAKWGPDIAHNQAYWRLLTPVFLHAGIMH 75
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGTGPVFAIIG 347
+ + L GP ++G + F ++Y GGI GN+ S+L +P +VG + +FA+
Sbjct: 76 IVTNMLTLWFVGPIAEHAFGSWRFLMLYAFGGIVGNIFSYLLSPLAISVGASSALFAMFA 135
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGII 402
++Y + +D F +L L+ P +D W H+G G++
Sbjct: 136 GLILYGVRYRDNPTIRAQGATF---LLFVVLNLFSGLLAPTIDLWGHIGGLIGGMM 188
>gi|403252324|ref|ZP_10918634.1| Rhomboid family protein [Thermotoga sp. EMP]
gi|402812337|gb|EJX26816.1| Rhomboid family protein [Thermotoga sp. EMP]
Length = 235
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
L L YGA+ + G+W+RL+T +F+H G+ H+ + +AL FG V YG F +
Sbjct: 37 LLLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVG 96
Query: 316 YTLGGISGNL-TSFLHTPEPTVGGTGPVFAIIGAWLIYQF-QNKDLIAKDVSERMFQKAI 373
Y GI GNL T + +VG +G +F +IG F ++ K V+ ++
Sbjct: 97 YFFTGIVGNLATHVFYHDTISVGASGAIFGLIGILFAAGFRKDTPFFMKPVT----GMSL 152
Query: 374 LSTALSFIISNFGP---VDTWAHLGAAFTGIIYGFLTCPL 410
L L ++ F P ++ AHLG +G++ G+ P
Sbjct: 153 LPIILINVVYGFLPGTNINNAAHLGGFLSGMLLGYTMRPF 192
>gi|347534329|ref|YP_004840999.1| hypothetical protein LSA_06440 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504385|gb|AEN99067.1| hypothetical protein LSA_06440 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 223
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA+ N LI G+ WRL+TP+F+H G H+ L+ L G + K YG F + +I+ +
Sbjct: 41 FGAEYNPLIKAGQIWRLITPIFIHIGYQHLILNMIVLYFLGSIIEKFYGHFRYLIIFLVS 100
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
GI GNL SF + G + +F + GA+ + + ++ F + T L
Sbjct: 101 GIVGNLFSFAFENGISAGSSTSIFGLFGAYFV--------LYLNLKNNTFIQNNAKTFLI 152
Query: 380 FIISNF 385
FII NF
Sbjct: 153 FIILNF 158
>gi|421131221|ref|ZP_15591405.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
gi|410357472|gb|EKP04727.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
Length = 447
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y
Sbjct: 292 LEWGANRRIETLAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 351
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 352 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIM 404
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D +H+G G I G + L Q G
Sbjct: 405 IVTFILTGLLWGLFGGIDNASHIGGLVGGTILGII---LFQFG 444
>gi|15613080|ref|NP_241383.1| hypothetical protein BH0517 [Bacillus halodurans C-125]
gi|10173130|dbj|BAB04236.1| BH0517 [Bacillus halodurans C-125]
Length = 248
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G N + GE+WRL+TP+FLH + H+ + +AL+ FGP + + G F +Y L G
Sbjct: 45 GVGFNLAVSQGEYWRLITPVFLHVSIGHLVFNSFALVIFGPALERMLGKGKFLFVYLLSG 104
Query: 321 ISGNLTSF----LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
N+ ++ L P +G +G +F + G ++ KDLI ++ + I+
Sbjct: 105 FIANVATYYLGGLAYPY-HLGASGAIFGLFGIFVYMVIYRKDLIDPANTQLVITIIIIGL 163
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
++F+ SN ++ +AHL G+I G P+V
Sbjct: 164 VMTFLSSN---INVFAHL----FGMIGGAALAPIV 191
>gi|385816085|ref|YP_005852476.1| hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|325126122|gb|ADY85452.1| Putative membrane protein [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 223
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 255 SLPLLYGAKIN-ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFF 313
S+ L GA N +++ G+WWRL T FLH G+ H+A + + G +G + F
Sbjct: 34 SVLLKMGAMFNPAVVMEGQWWRLFTAQFLHIGIMHIASNAIMIYYIGQYAEPVFGHWRFL 93
Query: 314 LIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQK 371
LIY L G+ G+L +F + + G + +F + GA F++KD + + ++
Sbjct: 94 LIYLLSGVGGSLLTLAFGNDQAISAGASTALFGLFGAMTCAGFKDKD---NTLLSFLGRQ 150
Query: 372 AILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIR 430
A ++ ++ F P VD H+G TG + V LGDA+ + + G L
Sbjct: 151 AWALAVINLVLDVFMPDVDILGHVGGLITGALLA------VILGDATYKGYGKGGRLL-- 202
Query: 431 QYANPCKSLIVFTIFVIILG 450
LIV+ + ++ LG
Sbjct: 203 ----AAAGLIVYVVLILRLG 218
>gi|400756473|ref|NP_952241.2| LOW QUALITY PROTEIN: rhomboid-like membrane protein [Geobacter
sulfurreducens PCA]
gi|399107784|gb|AAR34564.2| LOW QUALITY PROTEIN: rhomboid-related membrane protein [Geobacter
sulfurreducens PCA]
Length = 279
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 24/181 (13%)
Query: 226 LISILVSIDVAVF---------------LFEIASPIRNSEFGFFSLPLLYGAKINELILV 270
+I+I+++++V ++ LF SP RNS L LL + +
Sbjct: 52 VITIILAVNVVMYVASLLVDNRPPGQGGLFSALSPGRNS------LLLLGATGVVPIDRF 105
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
G +W L++ +LH GL H+ + AL P V + YG + F IYTLGG++G + S+L
Sbjct: 106 GRFWTLLSANYLHGGLLHIFFNMMALRQIAPLVAREYGTWRMFSIYTLGGVAGYVVSYLA 165
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
T+G + + A+IG+ L Y L + V + ++ + I+ +D
Sbjct: 166 GTGYTIGASCAICALIGSLLYYGKSRGGLYGQAVFKEVWGWVVGLFLFGLIVPG---IDN 222
Query: 391 W 391
W
Sbjct: 223 W 223
>gi|449483645|ref|XP_004156648.1| PREDICTED: uncharacterized protein LOC101224387 [Cucumis sativus]
Length = 471
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 7/194 (3%)
Query: 235 VAVFL--FEIASPIRNSEFGFFSLPL--LYGAKINELILVGEWWRLVTPMFLHSGLFHVA 290
+A FL F S N G SL L + ++N+++ + WRL+T ++LH+G+FH+
Sbjct: 169 IARFLGRFSFQSLKENPLLGPSSLTLRRMGALEVNKVVHGNQLWRLITCIWLHAGVFHLL 228
Query: 291 LSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAW 349
+ +LL G ++ + +G L+Y + G G+L S L +VG +G +F ++G
Sbjct: 229 ANMLSLLVIGIRLEQEFGFIRIGLLYVISGFGGSLLSSLFIQSNISVGASGALFGLLGGM 288
Query: 350 LIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCP 409
L N + + V+ + I+ A++ + VD +AH+G +G + GF+
Sbjct: 289 LSELITNWTIYSNKVAALVTLLVII--AINLAVGILPHVDNFAHIGGFISGFLLGFVFLI 346
Query: 410 LVQLGDASSRNSQE 423
Q G S R + +
Sbjct: 347 RPQFGWVSQRYTSQ 360
>gi|423398825|ref|ZP_17376026.1| hypothetical protein ICU_04519 [Bacillus cereus BAG2X1-1]
gi|423409727|ref|ZP_17386876.1| hypothetical protein ICY_04412 [Bacillus cereus BAG2X1-3]
gi|401646009|gb|EJS63643.1| hypothetical protein ICU_04519 [Bacillus cereus BAG2X1-1]
gi|401652842|gb|EJS70394.1| hypothetical protein ICY_04412 [Bacillus cereus BAG2X1-3]
Length = 190
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 15/155 (9%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
A NE I GEWWRL+T + +H L H + L G + K G F+F LI+ L GI
Sbjct: 36 AAYNEYIAKGEWWRLITSLLVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFILIFFLSGI 95
Query: 322 SGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
SGN++S++ P + G +G +F ++GA L L ++ S R + AI S +
Sbjct: 96 SGNISSYIIMPLEYIHAGASGSIFGLLGAQLFL------LYSRYRSSRPKEIAIFSIMIL 149
Query: 380 FII--SNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
++ + F P + +HL TG+I G ++ P +
Sbjct: 150 ILLLFTFFNPSANPISHL----TGLIIGGVSTPFL 180
>gi|57640721|ref|YP_183199.1| integral membrane protein rhomboid-like protein [Thermococcus
kodakarensis KOD1]
gi|57159045|dbj|BAD84975.1| integral membrane protein Rhomboid homolog [Thermococcus
kodakarensis KOD1]
Length = 206
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 12/145 (8%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
G WW+L T MF+H + H+ + + LLT G Q+ + GP + Y + G+ GN+ +
Sbjct: 58 GYWWQLFTAMFVHVNIIHIFFNMYFLLTMGRQLERVLGPRRVVMTYIVSGLVGNVLTLFL 117
Query: 331 TPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP- 387
P TV G +G +F I+GA + I+ V M Q A+++ F+I++ P
Sbjct: 118 KPPMTVSAGASGALFGIVGALIT--------ISGVVGGNM-QAAMMNAFFLFLINSVLPG 168
Query: 388 VDTWAHLGAAFTGIIYGFLTCPLVQ 412
V+ +AHLG GI G+ +++
Sbjct: 169 VNAYAHLGGLLAGIAIGYYYGKVIR 193
>gi|409911728|ref|YP_006890193.1| rhomboid-like membrane protein [Geobacter sulfurreducens KN400]
gi|298505301|gb|ADI84024.1| rhomboid-related membrane protein [Geobacter sulfurreducens KN400]
Length = 279
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 24/181 (13%)
Query: 226 LISILVSIDVAVF---------------LFEIASPIRNSEFGFFSLPLLYGAKINELILV 270
+I+I+++++V ++ LF SP RNS L LL + +
Sbjct: 52 VITIILAVNVVMYVASLLVDNRPLGQGGLFSALSPGRNS------LLLLGATGVVPIDRF 105
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
G +W L++ +LH GL H+ + AL P V + YG + F IYTLGG++G + S+L
Sbjct: 106 GRFWTLLSANYLHGGLLHIFFNMMALRQIAPLVAREYGTWRMFSIYTLGGVAGYVVSYLA 165
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
T+G + + A+IG+ L Y L + V + ++ + I+ +D
Sbjct: 166 GTGYTIGASCAICALIGSLLYYGKSRGGLYGQAVFKEVWGWVVGLFLFGLIVPG---IDN 222
Query: 391 W 391
W
Sbjct: 223 W 223
>gi|310792586|gb|EFQ28113.1| rhomboid family protein [Glomerella graminicola M1.001]
Length = 561
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 10/158 (6%)
Query: 252 GFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFT 311
GF +P IN+ +W+R +TP+FLH+GL H+ + +T G ++ + G
Sbjct: 302 GFGGVPEPTYTDINQSPEPNQWFRFITPIFLHAGLIHIGFNLLLQMTIGKEMEVAIGSIR 361
Query: 312 FFLIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVSE 366
FFL+Y GI GN+ ++ + G +G +F +I L+Y ++++ KD+
Sbjct: 362 FFLVYLSAGIFGNVMGANYAGVMAASTGASGALFGVIALTLLDLLYSWKDRRSPVKDL-- 419
Query: 367 RMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYG 404
MF +L +SF++ +D +AH+G G+ G
Sbjct: 420 -MF--IMLDVVISFVLGLLPGLDNFAHIGGFLMGLALG 454
>gi|379795908|ref|YP_005325906.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872898|emb|CCE59237.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 487
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-L 329
GEW+R++T MFLH H+ ++ +L FG V G + IY + G+ GN S
Sbjct: 200 GEWYRIITSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLGIYFIAGLFGNFVSLSF 259
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
+T +VG +G +F +IGA + +K K + + M IL +S +SN V
Sbjct: 260 NTTTISVGASGAIFGLIGAIFAMMYVSKTFNKKMLGQLMIALVIL-IGVSLFMSNINIV- 317
Query: 390 TWAHLGAAFTGII 402
AH+G G++
Sbjct: 318 --AHIGGFVGGLL 328
>gi|315652544|ref|ZP_07905527.1| rhomboid family protein [Lachnoanaerobaculum saburreum DSM 3986]
gi|419718196|ref|ZP_14245528.1| peptidase, S54 family [Lachnoanaerobaculum saburreum F0468]
gi|315485201|gb|EFU75600.1| rhomboid family protein [Lachnoanaerobaculum saburreum DSM 3986]
gi|383305641|gb|EIC96994.1| peptidase, S54 family [Lachnoanaerobaculum saburreum F0468]
Length = 205
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L YGA E I GE++RL T MF+H G+ H+ + L+ G ++ G F FF+IY
Sbjct: 40 LRYGAAFPENIKNGEYYRLATSMFMHFGIEHIVNNMLILVLLGGKLEDIMGHFKFFIIYM 99
Query: 318 LGGISGNLTSFLHTP-----EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA 372
L GI N+ S L + G +G +F ++GA L +K K + ++Q A
Sbjct: 100 LSGILANIASDLAQTMTGDFAVSAGASGAIFGVVGALLASLVLSK---GKIKNLNLYQIA 156
Query: 373 ILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
+ + + VD AH+G A +G+ G +
Sbjct: 157 VSLGLMLYAGFKTTGVDNIAHVGGAVSGVFIGLI 190
>gi|393218506|gb|EJD03994.1| rhomboid-domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 528
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 8/144 (5%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFL 329
+W+R +TP+FLH+G H+ L+ A L Q+ + G FFL+Y GI GN+ +F
Sbjct: 307 QWFRFITPIFLHAGFIHIILNMLAQLYVSAQLEREMGTGGFFLVYFAAGIFGNILGGNFS 366
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ--KAILSTALSFIISNFGP 387
P+VG +G +F + + F + + + ++ + IL + FI
Sbjct: 367 LVGVPSVGASGAIFGTVAVSWVDLFAHWKYHYRPSTRLIYMIIELILGIGMGFIPY---- 422
Query: 388 VDTWAHLGAAFTGIIYGFLTCPLV 411
VD +AHLG G++ G + P++
Sbjct: 423 VDNFAHLGGFLMGLLVGMIFYPVI 446
>gi|434384588|ref|YP_007095199.1| putative membrane protein [Chamaesiphon minutus PCC 6605]
gi|428015578|gb|AFY91672.1| putative membrane protein [Chamaesiphon minutus PCC 6605]
Length = 528
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 21/190 (11%)
Query: 228 SILVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 285
+ +++I+V +F E+ S I + +F F +G L++ G+WWR++T FLH G
Sbjct: 330 NFIIAINVLIFCAELFWQSKIGDKDFTFIP----WGGLSAPLVVGGQWWRIITANFLHMG 385
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT-------SFLHTPEPTVGG 338
+ H+ ++ ALL G V G + + Y + G+ G++ ++ TP TVG
Sbjct: 386 ILHLGMNMLALLYLGKFVEYRLGTWKYLFAYLVAGL-GSMAVITYIDLKWMTTPHITVGA 444
Query: 339 TGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA--LSFIISNFGPVDTWAHLGA 396
+G + ++GA + + R FQ + S L F ++N G H
Sbjct: 445 SGAIMGMLGAMGAIHLRGWRQAKVAAAGRQFQAVLFSVGFQLVFDLTN-GHTSIVGH--- 500
Query: 397 AFTGIIYGFL 406
F+G+I GFL
Sbjct: 501 -FSGLIIGFL 509
>gi|427392549|ref|ZP_18886554.1| hypothetical protein HMPREF9698_00360 [Alloiococcus otitis ATCC
51267]
gi|425731229|gb|EKU94048.1| hypothetical protein HMPREF9698_00360 [Alloiococcus otitis ATCC
51267]
Length = 228
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 260 YGAKIN-ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
YGAK N +I +WWRL+TPMFLH GL H+ + + G + +G F + L+Y L
Sbjct: 46 YGAKFNFAIIYFNQWWRLITPMFLHIGLAHILFNLLIVYYLGSNLEYFFGHFKYALLYLL 105
Query: 319 GGISGNLTSFLHTPEPTVGGTGPVFAI 345
GGI GN+ SF + G + +F +
Sbjct: 106 GGIMGNIFSFAFNISISAGASTAIFGL 132
>gi|386284983|ref|ZP_10062202.1| hypothetical protein SULAR_07038 [Sulfurovum sp. AR]
gi|385344386|gb|EIF51103.1| hypothetical protein SULAR_07038 [Sulfurovum sp. AR]
Length = 226
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 268 ILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327
+L GEWWRL+T MFLH G+ H+ ++ ++L G + ++ IY GI G L S
Sbjct: 52 VLKGEWWRLLTAMFLHGGMTHLLMNMFSLYLVGRGAEMYFDTKSYLSIYFFSGIIGGLVS 111
Query: 328 -FLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
++H VG +G +F + GA + +++ IA M +I+ A++ +I
Sbjct: 112 LYIHPVSVGVGASGAIFGVFGALAGFFLAHREKIASHTKAFMKDFSII-IAINLVIGFSI 170
Query: 387 P-VDTWAHLGAAFTGIIYGFL 406
P +D AH+G G I GF+
Sbjct: 171 PSIDVSAHIGGLIVGFIGGFV 191
>gi|326435850|gb|EGD81420.1| hypothetical protein PTSG_02140 [Salpingoeca sp. ATCC 50818]
Length = 1498
Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 5/153 (3%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+W+RL MFLH G H+ +F ++ K G F IY L GI G L S T
Sbjct: 1297 QWYRLYLAMFLHVGFVHLFFVVLMQHSFAVEIEKLAGWLRMFFIYMLAGIGGYLVSANFT 1356
Query: 332 PEPTVGGTGP-VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P G P ++ ++G + FQ+ L+ + ++ F K L ++ + +D
Sbjct: 1357 PYQVSTGASPALYGLLGCLFVELFQSWQLL--ESPKKEFLKLFLIAIVALAVGLLPYIDN 1414
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLG--DASSRNS 421
W+HLG GI+ + P + G DA+ + +
Sbjct: 1415 WSHLGGFAFGILSSIVFLPYITFGKWDAARKRT 1447
>gi|386312683|ref|YP_006008848.1| rhomboid family protein [Shewanella putrefaciens 200]
gi|319425308|gb|ADV53382.1| Rhomboid family protein [Shewanella putrefaciens 200]
Length = 523
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 8/201 (3%)
Query: 198 RELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLP 257
++L +++ L+ L R + + + +L+S++ VF+F S F L
Sbjct: 300 KQLDHRNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQS-HLL 356
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA +L GEWWRLVT F+H GL H+ L+ + L G + G + L+Y
Sbjct: 357 LEWGANFRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYL 416
Query: 318 LGGISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERM-FQKAILS 375
+ GI ++ S + +VG +G + + G +I+ + K + AK++ + AI
Sbjct: 417 VSGILASVASLCWYDATISVGASGAIMGLFGILVIWVW--KRVFAKEIHFILSINVAIFV 474
Query: 376 TALSFIISNFGPVDTWAHLGA 396
TA S + G VD AH+G
Sbjct: 475 TA-SVVSGFLGGVDNAAHIGG 494
>gi|222099054|ref|YP_002533622.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
gi|221571444|gb|ACM22256.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
Length = 236
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
L L YGA+ + G+W+RL+T +F+H G+ H+ + +AL FG V YG F
Sbjct: 38 LLLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGSEKFLFS 97
Query: 316 YTLGGISGNL-TSFLHTPEPTVGGTGPVFAIIGAWLIYQF-QNKDLIAKDVSERMFQKAI 373
Y G+ GN+ T + +VG +G +F +IG F ++ K V+ ++
Sbjct: 98 YFFTGVVGNIATHIFYHDTISVGASGAIFGLIGVLFAAGFRKDTPFFMKPVT----GVSL 153
Query: 374 LSTALSFIISNFGP---VDTWAHLGAAFTGIIYGFLTCPL 410
L L ++ F P ++ AHLG +G++ G+ P
Sbjct: 154 LPIILINVVYGFLPGTNINNAAHLGGFLSGMLLGYTMKPF 193
>gi|146292013|ref|YP_001182437.1| rhomboid family protein [Shewanella putrefaciens CN-32]
gi|145563703|gb|ABP74638.1| Rhomboid family protein [Shewanella putrefaciens CN-32]
Length = 523
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 10/202 (4%)
Query: 198 RELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLP 257
++L +++ L+ L R + + + +L+S++ VF+F S F L
Sbjct: 300 KQLDHRNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHFL- 356
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA +L GEWWRLVT F+H GL H+ L+ + L G + G + L+Y
Sbjct: 357 LEWGANFRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYL 416
Query: 318 LGGISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERM-FQKAILS 375
+ GI ++ S + +VG +G + + G +I+ + K + AK++ + AI
Sbjct: 417 VSGILASVASLCWYDATISVGASGAIMGLFGILVIWVW--KRVFAKEIHFILSINVAIFV 474
Query: 376 TALSFIISNF-GPVDTWAHLGA 396
TA ++S F G VD AH+G
Sbjct: 475 TAS--VVSGFLGGVDNAAHIGG 494
>gi|154483847|ref|ZP_02026295.1| hypothetical protein EUBVEN_01551 [Eubacterium ventriosum ATCC
27560]
gi|149735338|gb|EDM51224.1| peptidase, S54 family [Eubacterium ventriosum ATCC 27560]
Length = 201
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 22/198 (11%)
Query: 215 LQRTEETSNLYLISILVSIDVAVFL-FEIASPIRNSEFGFFSLPLLYGAKINELILVGEW 273
+ E+ Y+ ++LV+I+V VFL E + E+ ++ Y I E G+W
Sbjct: 1 MNEPEQRKIPYVTAVLVAINVVVFLVMEFFGSTESGEY-MYAHGASYAPDIFE---NGQW 56
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF---LH 330
+R++T MF+H G H+ + L G Q+ +++G + + Y + GI+G + S +
Sbjct: 57 YRILTSMFMHFGAEHLINNMVMLYILGYQIEENFGRVKYLITYFICGIAGGIISSGIEMI 116
Query: 331 TPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG-- 386
T E ++ G +G +F I G L+ F+++ + + + R+ L FI+ FG
Sbjct: 117 TGEYSISAGASGAIFGIFGVLLVMIFKSRKQLGQVSAPRLI--------LLFILMVFGNM 168
Query: 387 --PVDTWAHLGAAFTGII 402
VD AHLG A TG++
Sbjct: 169 QEGVDWMAHLGGAVTGVV 186
>gi|126175582|ref|YP_001051731.1| rhomboid family protein [Shewanella baltica OS155]
gi|386342329|ref|YP_006038695.1| rhomboid family protein [Shewanella baltica OS117]
gi|125998787|gb|ABN62862.1| Rhomboid family protein [Shewanella baltica OS155]
gi|334864730|gb|AEH15201.1| Rhomboid family protein [Shewanella baltica OS117]
Length = 541
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 6/168 (3%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEF-GFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
IL+ ++V VF+ S F G F L +GA +L GEWWRL+T F+H GL
Sbjct: 332 ILMYLNVLVFILMAWSSQHFINFQGSFMLE--WGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAII 346
H+AL+ + L G + G + FL Y + G+ ++ S + +VG +G + ++
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGVLASIASICWYDATVSVGASGAIMGLL 449
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 394
G +I+ + K + +D++ + +S + G VD AH+
Sbjct: 450 GILVIWAW--KKIFPEDINWVLSINLAFFVTISLVAGLLGGVDNAAHI 495
>gi|386319193|ref|YP_006015356.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
gi|323464364|gb|ADX76517.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
Length = 479
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
+V+I+V ++L ++++ +L GA + ++ GEW+RL+T MFLH H+
Sbjct: 162 VVAINVLIWLIVTWFTPHHTDYEIINL----GALAHFNVVHGEWYRLITSMFLHIEFQHL 217
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
L+ +L FG V GP Y L GI GNL S L T ++G +G +F ++GA
Sbjct: 218 LLNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGNLISLALITTSLSLGASGAIFGLMGA 277
Query: 349 WLIYQFQNKDLIAKDVSERMF-QKAILSTALSFII 382
LIA + R F QK IL ++ ++
Sbjct: 278 ----------LIALMIISRRFDQKVILQMVIAVVV 302
>gi|336472615|gb|EGO60775.1| hypothetical protein NEUTE1DRAFT_76205 [Neurospora tetrasperma FGSC
2508]
gi|350294152|gb|EGZ75237.1| rhomboid-domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 550
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 15/174 (8%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT--SFL 329
+WWR +TPMFLH+G+ H+ + +T G ++ +S G FF++Y GI G + +F
Sbjct: 280 QWWRFITPMFLHAGVIHIGFNMLLQMTIGKEMERSIGSIRFFIVYVSAGIFGFVMGGNFA 339
Query: 330 HTPEPTVGGTGPVFAIIG---AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
T G +G +F II L+Y ++++ KD+ +F L +SF++
Sbjct: 340 ANGMQTTGASGALFGIIALLLLDLLYSWRDRKSPWKDL---LFIG--LDIVISFVLGLLP 394
Query: 387 PVDTWAHLGAAFTGIIYGF--LTCPLV---QLGDASSRNSQEEGITLIRQYANP 435
+D +AH+G TG+ G L P ++GD + + +RQ A P
Sbjct: 395 GLDNFAHIGGFLTGLALGICVLQSPNALRRRIGDEPPYSQVVDTNGFLRQGAPP 448
>gi|319892596|ref|YP_004149471.1| membrane peptidase [Staphylococcus pseudintermedius HKU10-03]
gi|317162292|gb|ADV05835.1| Putative membrane peptidase, contains TPR repeat domain protein
[Staphylococcus pseudintermedius HKU10-03]
Length = 479
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
+V+I+V ++L ++++ +L GA + ++ GEW+RL+T MFLH H+
Sbjct: 162 VVAINVLIWLIVTWFTPHHTDYEIINL----GALAHFNVVHGEWYRLITSMFLHIEFQHL 217
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
L+ +L FG V GP Y L GI GNL S L T ++G +G +F ++GA
Sbjct: 218 LLNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGNLISLALITTSLSLGASGAIFGLMGA 277
Query: 349 WLIYQFQNKDLIAKDVSERMF-QKAILSTALSFII 382
LIA + R F QK IL ++ ++
Sbjct: 278 ----------LIALMIISRRFDQKVILQMVIAVVV 302
>gi|357128747|ref|XP_003566031.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 214
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
LL+ + N LI G+ WRL T LH GLFH+A++ ++L GP+V ++ GP F IY
Sbjct: 38 LLHRSPDNALIKKGQIWRLATSSLLHGGLFHLAVNAYSLHVVGPEVEEATGPRRFLAIYC 97
Query: 318 LGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLI--AKDVSERMFQKAILS 375
++G+L S+ G + +GA +Y ++N+ + A++ + + +++
Sbjct: 98 TSALAGSLMSYW------FGMFNLLLDRVGAQAVYVWRNQKYLENAEETLKDIRYDVLIN 151
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYA 433
+ + F +D WAHLG G + P + + + E+G + + A
Sbjct: 152 LGIGLFL--FRRIDNWAHLGGFLGGAAVEWFVGP-----NWNEHHVAEDGTVVFKDRA 202
>gi|240103462|ref|YP_002959771.1| peptidase [Thermococcus gammatolerans EJ3]
gi|239911016|gb|ACS33907.1| Peptidase, putative, Rhomboid-like protein protein [Thermococcus
gammatolerans EJ3]
Length = 207
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 15/192 (7%)
Query: 225 YLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVG-EWWRLVTPMFLH 283
+L L I+VAV+L+E+ + +S G LL A +N L+ EWWRL T MF+H
Sbjct: 14 WLTYTLAFINVAVYLYEL--HLSDSIAGPSVYALLKLALVNVLVTQHHEWWRLFTAMFVH 71
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGG-TGP 341
H+A++ + L+ G Q+ G + + ++Y G+ GN+ S L P GG +G
Sbjct: 72 LSWIHLAMNTFFLIYLGSQLELFVGRWRYLILYITAGLFGNVLSVALMDPYTISGGASGA 131
Query: 342 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTG 400
+F I GA ++ + + ++ Q A+ + F+I+++ P V+ AHLG G
Sbjct: 132 LFGIAGA---------LIMIEGILKKNIQSALANAFFLFLINSWMPHVNAIAHLGGLLVG 182
Query: 401 IIYGFLTCPLVQ 412
I +G++ V+
Sbjct: 183 IAFGYIYGNYVK 194
>gi|315641220|ref|ZP_07896297.1| rhomboid family protein [Enterococcus italicus DSM 15952]
gi|315482987|gb|EFU73506.1| rhomboid family protein [Enterococcus italicus DSM 15952]
Length = 226
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 255 SLPL-----LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGP 309
S+PL LYG I L ++WR +TP+F H GL H A++ L G Q+ YG
Sbjct: 35 SIPLESNGVLYGPAIAFL---HQYWRFLTPIFFHFGLMHFAVNSVVLYYMGEQIEAIYGH 91
Query: 310 FTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSER 367
FF+IY + GI GNL SF + G + +F + G+++I F + E
Sbjct: 92 TRFFIIYLVTGIMGNLMSFAFNTAGIISAGSSTALFGLFGSFIILGFHLRH---NPAIEG 148
Query: 368 MFQKAILSTALSFIISNFGP-VDTWAH 393
M ++ L LSF+ F +D W H
Sbjct: 149 MVKQFTLFLILSFVFGMFDQLIDIWGH 175
>gi|383125162|ref|ZP_09945818.1| hypothetical protein BSIG_4372 [Bacteroides sp. 1_1_6]
gi|251838549|gb|EES66635.1| hypothetical protein BSIG_4372 [Bacteroides sp. 1_1_6]
Length = 586
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 23/200 (11%)
Query: 210 ERDLALQRTEETSNLYLI---------SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLY 260
ER L + +E+S ++ +L+ I++ VF+ A+ E +L L +
Sbjct: 132 ERRLQAESEKESSFIHFFIPRKGFIATPVLIDINILVFILMAATGAGILEPSTLAL-LNW 190
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA L L G+WWR VT F+H G FH+ ++ +A + G + G F+ Y L G
Sbjct: 191 GADFGPLTLTGDWWRAVTCNFVHIGAFHLLMNMYAFIYIGIWLEHLIGTRRMFVSYLLTG 250
Query: 321 I-SGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ S + ++H + G +G +F + G +L + ++ ER +KA+L++ L
Sbjct: 251 LCSAVFSLYMHAETISAGASGSIFGLYGIFLAFLLFHR-------IERSQRKALLTSILI 303
Query: 380 FIISNF-----GPVDTWAHL 394
F+ N VD AH+
Sbjct: 304 FVGYNLIYGIRAGVDNAAHI 323
>gi|227500934|ref|ZP_03930983.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
gi|227216905|gb|EEI82299.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
Length = 226
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA + L+ +G+WWR+ T F+H G FH+ + + L + GP K YG F +IY L
Sbjct: 43 FGAMVKPLVKLGQWWRIFTAAFIHIGFFHILFNMYFLYSIGPLFEKLYGSRNFLIIYLLA 102
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIG--AWLIYQFQNKDLI 360
GI GNL ++ TV G + ++ I G L+ +++ D++
Sbjct: 103 GIMGNLFTYAFASNNTVSAGASTSLYGIFGLAIGLMINYRDDDIL 147
>gi|120600057|ref|YP_964631.1| rhomboid family protein [Shewanella sp. W3-18-1]
gi|120560150|gb|ABM26077.1| Rhomboid family protein [Shewanella sp. W3-18-1]
Length = 523
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 8/201 (3%)
Query: 198 RELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLP 257
++L +++ L+ L R + + + +L+S++ VF+F S F L
Sbjct: 300 KQLDHRNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHFL- 356
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA +L GEWWRLVT F+H GL H+ L+ + L G + G + L+Y
Sbjct: 357 LEWGANFRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYL 416
Query: 318 LGGISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERM-FQKAILS 375
+ GI ++ S + +VG +G + + G +I+ + K + AK++ + AI
Sbjct: 417 VSGILASVASLCWYDATISVGASGAIMGLFGILVIWVW--KRVFAKEIHFILSINVAIFV 474
Query: 376 TALSFIISNFGPVDTWAHLGA 396
TA S + G VD AH+G
Sbjct: 475 TA-SVVSGFLGGVDNAAHIGG 494
>gi|418679207|ref|ZP_13240471.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418686873|ref|ZP_13248037.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|421090060|ref|ZP_15550861.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|400320332|gb|EJO68202.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410001323|gb|EKO51937.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|410738580|gb|EKQ83314.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
Length = 514
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y
Sbjct: 359 LEWGANRRIETLAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 418
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 419 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIM 471
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D +H+G G I G + L Q G
Sbjct: 472 IVTFILTGLLWGLFGGIDNASHIGGLVGGTILGII---LFQFG 511
>gi|421107208|ref|ZP_15567763.1| peptidase, S54 family [Leptospira kirschneri str. H2]
gi|410007727|gb|EKO61413.1| peptidase, S54 family [Leptospira kirschneri str. H2]
Length = 514
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y
Sbjct: 359 LEWGANRRIETLAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 418
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 419 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIM 471
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D +H+G G I G + L Q G
Sbjct: 472 IVTFILTGLLWGLFGGIDNASHIGGLVGGTILGII---LFQFG 511
>gi|422727749|ref|ZP_16784179.1| peptidase, S54 family protein [Enterococcus faecalis TX0012]
gi|315151706|gb|EFT95722.1| peptidase, S54 family protein [Enterococcus faecalis TX0012]
Length = 236
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LH 330
E+WR +TPMFLH G H+ L+ L G QV YG + + IY L GI+GN+ SF
Sbjct: 61 EYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG 120
Query: 331 TPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPV 388
TP + G + +F + GA++I +D M Q+ + ++ + + F V
Sbjct: 121 TPNSVSAGASTALFGLFGAFVILGRHFRD---NPAIMYMVQRYSMFIVINLLFNLFSSSV 177
Query: 389 DTWAHLGAAFTGII 402
D H+G G++
Sbjct: 178 DMMGHVGGLIGGLL 191
>gi|418741786|ref|ZP_13298160.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|410751234|gb|EKR08213.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 514
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y
Sbjct: 359 LEWGANRRIETLAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 418
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 419 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIM 471
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D +H+G G I G + L Q G
Sbjct: 472 IVTFILTGLLWGLFGGIDNASHIGGLVGGTILGII---LFQFG 511
>gi|451946059|ref|YP_007466654.1| putative membrane protein [Desulfocapsa sulfexigens DSM 10523]
gi|451905407|gb|AGF77001.1| putative membrane protein [Desulfocapsa sulfexigens DSM 10523]
Length = 281
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 17/197 (8%)
Query: 222 SNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLY-GAKINELILVG--------- 271
+N ++ ++V+ ++A+F+ + ++++ GF S PL + N L+++G
Sbjct: 49 TNDTILKVIVATNIAMFVLSLVIDLKHT--GFSSSPLNFLSPSNNSLLILGSTGTIPIFQ 106
Query: 272 --EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL 329
WW L++ +LH L H+ + A+ GP + + YG F+IYTL GI G S +
Sbjct: 107 LNRWWSLLSANYLHGSLLHLVFNMIAIYQIGPLLIREYGVSKMFIIYTLSGIGGFFISSV 166
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
T+G + + +IGA L Y + ++ A+ F++ ++
Sbjct: 167 FGVRFTIGASAALCGLIGAALYYGKSRGGTYGNAIYNQIGGWALGIFLFGFMVPG---IN 223
Query: 390 TWAHLGAAFTGIIYGFL 406
W H G G + G+L
Sbjct: 224 NWGHGGGMLVGALSGYL 240
>gi|418906494|ref|ZP_13460520.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418928899|ref|ZP_13482785.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377738811|gb|EHT62820.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377763399|gb|EHT87255.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
Length = 470
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 173 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 232
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 233 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 291
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 292 LFMSNINIV---AHIGGFIGGLL 311
>gi|456012071|gb|EMF45791.1| Rhomboid family protein [Planococcus halocryophilus Or1]
Length = 202
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
YG N I G+WWR TPMFLHSG+ H+ + ++L FGP++ + G F IY L
Sbjct: 43 FYGVGSNFYIAEGQWWRFFTPMFLHSGVMHLLFNMFSLFLFGPELERLTGKIRFITIYLL 102
Query: 319 GGISGNLTSFLHTP--EPTVGGTGPVFAIIGAW--LIYQFQNKDLIAKDVSERMFQKAIL 374
G + ++ P VG +G +F + GA+ L+Y + + L + + + ++
Sbjct: 103 AGFFASAATYFLQPLDYSHVGASGAIFGVFGAFGALVY-YGGRAL--PQLKQIILPIIVI 159
Query: 375 STALSFIISNFGPVDTWAHLGAAFTGIIYG 404
S ++F+ N ++ AH+ TG + G
Sbjct: 160 SIVMTFLTPN---INVTAHIAGMITGFLIG 186
>gi|308197805|gb|ADO17919.1| rhomboid protease 1 [Mycobacterium smegmatis]
Length = 296
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 23/207 (11%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 285
L L++++V +F+ +IA S + L L E++RLVT MFLH G
Sbjct: 85 LTYTLIAVNVLMFVLQIAGGDLESRLTLWP---------PALALHDEYYRLVTSMFLHYG 135
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGPVF 343
H+ + WAL GP + K G F ++Y L G+ G++ ++ +P T G +G +F
Sbjct: 136 AMHLLFNMWALYVVGPPLEKWLGLTRFGVLYALSGLGGSVLVYMLSPLNSATAGASGAIF 195
Query: 344 AIIGA-WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW-AHLGAAFTGI 401
+ GA +++ + N D+ A V +++ +F+ G +W H+G G+
Sbjct: 196 GLFGAIFVVARHLNLDVRAIGV------IVVINLVFTFVGPALGTAISWQGHIG----GL 245
Query: 402 IYGFLTCPLVQLGDASSRNSQEEGITL 428
+ G L R + G+T+
Sbjct: 246 VTGALVASAFVYAPRERRTATAAGVTV 272
>gi|398339922|ref|ZP_10524625.1| hypothetical protein LkirsB1_10989 [Leptospira kirschneri serovar
Bim str. 1051]
Length = 514
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y
Sbjct: 359 LEWGANRRIETLAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 418
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 419 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIM 471
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D +H+G G I G + L Q G
Sbjct: 472 IVTFILTGLLWGLFGGIDNASHIGGLVGGTILGII---LFQFG 511
>gi|29347217|ref|NP_810720.1| hypothetical protein BT_1807 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339116|gb|AAO76914.1| conserved protein, with rhomboid family domain [Bacteroides
thetaiotaomicron VPI-5482]
Length = 586
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 23/200 (11%)
Query: 210 ERDLALQRTEETSNLYLI---------SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLY 260
ER L + +E+S ++ +L+ I++ VF+ A+ E +L L +
Sbjct: 132 ERRLQAESEKESSFIHFFIPRKGFIATPVLIDINILVFILMAATGAGILEPSTLAL-LNW 190
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA L L G+WWR VT F+H G FH+ ++ +A + G + G F+ Y L G
Sbjct: 191 GADFGPLTLTGDWWRAVTCNFVHIGAFHLLMNMYAFIYIGIWLEHLIGTRRMFVSYLLTG 250
Query: 321 I-SGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ S + ++H + G +G +F + G +L + ++ ER +KA+L++ L
Sbjct: 251 LCSAVFSLYMHAETISTGASGSIFGLYGIFLAFLLFHR-------IERSQRKALLTSILI 303
Query: 380 FIISNF-----GPVDTWAHL 394
F+ N VD AH+
Sbjct: 304 FVGYNLIYGIRAGVDNAAHI 323
>gi|373950714|ref|ZP_09610675.1| Rhomboid family protein [Shewanella baltica OS183]
gi|386323452|ref|YP_006019569.1| rhomboid family protein [Shewanella baltica BA175]
gi|333817597|gb|AEG10263.1| Rhomboid family protein [Shewanella baltica BA175]
gi|373887314|gb|EHQ16206.1| Rhomboid family protein [Shewanella baltica OS183]
Length = 538
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 3/141 (2%)
Query: 255 SLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFL 314
S L +GA +L GEWWRL+T F+H GL H+AL+ + L G + G + FL
Sbjct: 357 SFMLEWGANFRPKVLAGEWWRLITSTFIHGGLAHLALNLYGLFFVGSFLEPVLGKWRLFL 416
Query: 315 IYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y + GI ++ S + +VG +G + ++G +I+ + K + +D++ +
Sbjct: 417 AYLITGILASIASICWYDATVSVGASGAIMGLLGILVIWAW--KKIFPEDINWVLSINLA 474
Query: 374 LSTALSFIISNFGPVDTWAHL 394
+S + G VD AH+
Sbjct: 475 FFVTISLVAGLLGGVDNAAHI 495
>gi|29377262|ref|NP_816416.1| small hydrophobic molecule transporter protein [Enterococcus
faecalis V583]
gi|227554271|ref|ZP_03984318.1| S54 family peptidase [Enterococcus faecalis HH22]
gi|229544828|ref|ZP_04433553.1| S54 family peptidase [Enterococcus faecalis TX1322]
gi|229549095|ref|ZP_04437820.1| S54 family peptidase [Enterococcus faecalis ATCC 29200]
gi|256616711|ref|ZP_05473557.1| membrane-associated serine protease [Enterococcus faecalis ATCC
4200]
gi|256854083|ref|ZP_05559448.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256960966|ref|ZP_05565137.1| membrane-associated serine protease [Enterococcus faecalis Merz96]
gi|257081651|ref|ZP_05576012.1| membrane-associated serine protease [Enterococcus faecalis E1Sol]
gi|257084247|ref|ZP_05578608.1| membrane-associated serine protease [Enterococcus faecalis Fly1]
gi|257087753|ref|ZP_05582114.1| membrane-associated serine protease [Enterococcus faecalis D6]
gi|257091025|ref|ZP_05585386.1| membrane-associated serine protease [Enterococcus faecalis CH188]
gi|257420174|ref|ZP_05597168.1| membrane-associated serine protease [Enterococcus faecalis T11]
gi|257421601|ref|ZP_05598591.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293382447|ref|ZP_06628382.1| rhomboid family protein [Enterococcus faecalis R712]
gi|293387169|ref|ZP_06631730.1| rhomboid family protein [Enterococcus faecalis S613]
gi|300860492|ref|ZP_07106579.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
TUSoD Ef11]
gi|307276144|ref|ZP_07557275.1| peptidase, S54 family protein [Enterococcus faecalis TX2134]
gi|307286868|ref|ZP_07566950.1| peptidase, S54 family protein [Enterococcus faecalis TX0109]
gi|312900482|ref|ZP_07759784.1| peptidase, S54 family protein [Enterococcus faecalis TX0470]
gi|312904732|ref|ZP_07763881.1| peptidase, S54 family protein [Enterococcus faecalis TX0635]
gi|312906502|ref|ZP_07765504.1| peptidase, S54 family protein [Enterococcus faecalis DAPTO 512]
gi|312910446|ref|ZP_07769292.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
DAPTO 516]
gi|312951098|ref|ZP_07770003.1| peptidase, S54 family protein [Enterococcus faecalis TX0102]
gi|384514113|ref|YP_005709206.1| rhomboid family protein [Enterococcus faecalis OG1RF]
gi|384519578|ref|YP_005706883.1| rhomboid family protein [Enterococcus faecalis 62]
gi|421512726|ref|ZP_15959525.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecalis ATCC 29212]
gi|422684496|ref|ZP_16742732.1| peptidase, S54 family protein [Enterococcus faecalis TX4000]
gi|422690193|ref|ZP_16748251.1| peptidase, S54 family protein [Enterococcus faecalis TX0630]
gi|422691144|ref|ZP_16749183.1| peptidase, S54 family protein [Enterococcus faecalis TX0031]
gi|422693799|ref|ZP_16751805.1| peptidase, S54 family protein [Enterococcus faecalis TX4244]
gi|422697513|ref|ZP_16755449.1| peptidase, S54 family protein [Enterococcus faecalis TX1346]
gi|422699619|ref|ZP_16757482.1| peptidase, S54 family protein [Enterococcus faecalis TX1342]
gi|422702192|ref|ZP_16760030.1| peptidase, S54 family protein [Enterococcus faecalis TX1302]
gi|422706114|ref|ZP_16763819.1| peptidase, S54 family protein [Enterococcus faecalis TX0043]
gi|422709156|ref|ZP_16766669.1| peptidase, S54 family protein [Enterococcus faecalis TX0027]
gi|422712654|ref|ZP_16769417.1| peptidase, S54 family protein [Enterococcus faecalis TX0309A]
gi|422716503|ref|ZP_16773207.1| peptidase, S54 family protein [Enterococcus faecalis TX0309B]
gi|422719592|ref|ZP_16776223.1| peptidase, S54 family protein [Enterococcus faecalis TX0017]
gi|422723419|ref|ZP_16779955.1| peptidase, S54 family protein [Enterococcus faecalis TX2137]
gi|422726049|ref|ZP_16782504.1| peptidase, S54 family protein [Enterococcus faecalis TX0312]
gi|422731124|ref|ZP_16787499.1| peptidase, S54 family protein [Enterococcus faecalis TX0645]
gi|422734025|ref|ZP_16790322.1| peptidase, S54 family protein [Enterococcus faecalis TX1341]
gi|422738373|ref|ZP_16793570.1| peptidase, S54 family protein [Enterococcus faecalis TX2141]
gi|424672612|ref|ZP_18109567.1| peptidase, S54 family [Enterococcus faecalis 599]
gi|424755744|ref|ZP_18183600.1| peptidase, S54 family [Enterococcus faecalis R508]
gi|428767934|ref|YP_007154045.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis str. Symbioflor 1]
gi|430359105|ref|ZP_19425721.1| membrane-associated serine protease [Enterococcus faecalis OG1X]
gi|430370856|ref|ZP_19429263.1| membrane-associated serine protease [Enterococcus faecalis M7]
gi|29344728|gb|AAO82486.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis V583]
gi|227176561|gb|EEI57533.1| S54 family peptidase [Enterococcus faecalis HH22]
gi|229305783|gb|EEN71779.1| S54 family peptidase [Enterococcus faecalis ATCC 29200]
gi|229310050|gb|EEN76037.1| S54 family peptidase [Enterococcus faecalis TX1322]
gi|256596238|gb|EEU15414.1| membrane-associated serine protease [Enterococcus faecalis ATCC
4200]
gi|256711026|gb|EEU26069.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256951462|gb|EEU68094.1| membrane-associated serine protease [Enterococcus faecalis Merz96]
gi|256989681|gb|EEU76983.1| membrane-associated serine protease [Enterococcus faecalis E1Sol]
gi|256992277|gb|EEU79579.1| membrane-associated serine protease [Enterococcus faecalis Fly1]
gi|256995783|gb|EEU83085.1| membrane-associated serine protease [Enterococcus faecalis D6]
gi|256999837|gb|EEU86357.1| membrane-associated serine protease [Enterococcus faecalis CH188]
gi|257162002|gb|EEU91962.1| membrane-associated serine protease [Enterococcus faecalis T11]
gi|257163425|gb|EEU93385.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291080131|gb|EFE17495.1| rhomboid family protein [Enterococcus faecalis R712]
gi|291083440|gb|EFE20403.1| rhomboid family protein [Enterococcus faecalis S613]
gi|295113720|emb|CBL32357.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Enterococcus sp. 7L76]
gi|300849531|gb|EFK77281.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
TUSoD Ef11]
gi|306502083|gb|EFM71369.1| peptidase, S54 family protein [Enterococcus faecalis TX0109]
gi|306507138|gb|EFM76277.1| peptidase, S54 family protein [Enterococcus faecalis TX2134]
gi|310627445|gb|EFQ10728.1| peptidase, S54 family protein [Enterococcus faecalis DAPTO 512]
gi|310630874|gb|EFQ14157.1| peptidase, S54 family protein [Enterococcus faecalis TX0102]
gi|310631933|gb|EFQ15216.1| peptidase, S54 family protein [Enterococcus faecalis TX0635]
gi|311289218|gb|EFQ67774.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
DAPTO 516]
gi|311292401|gb|EFQ70957.1| peptidase, S54 family protein [Enterococcus faecalis TX0470]
gi|315026583|gb|EFT38515.1| peptidase, S54 family protein [Enterococcus faecalis TX2137]
gi|315030810|gb|EFT42742.1| peptidase, S54 family protein [Enterococcus faecalis TX4000]
gi|315033041|gb|EFT44973.1| peptidase, S54 family protein [Enterococcus faecalis TX0017]
gi|315036315|gb|EFT48247.1| peptidase, S54 family protein [Enterococcus faecalis TX0027]
gi|315145726|gb|EFT89742.1| peptidase, S54 family protein [Enterococcus faecalis TX2141]
gi|315148748|gb|EFT92764.1| peptidase, S54 family protein [Enterococcus faecalis TX4244]
gi|315154212|gb|EFT98228.1| peptidase, S54 family protein [Enterococcus faecalis TX0031]
gi|315156498|gb|EFU00515.1| peptidase, S54 family protein [Enterococcus faecalis TX0043]
gi|315158975|gb|EFU02992.1| peptidase, S54 family protein [Enterococcus faecalis TX0312]
gi|315162792|gb|EFU06809.1| peptidase, S54 family protein [Enterococcus faecalis TX0645]
gi|315166274|gb|EFU10291.1| peptidase, S54 family protein [Enterococcus faecalis TX1302]
gi|315169133|gb|EFU13150.1| peptidase, S54 family protein [Enterococcus faecalis TX1341]
gi|315171857|gb|EFU15874.1| peptidase, S54 family protein [Enterococcus faecalis TX1342]
gi|315173893|gb|EFU17910.1| peptidase, S54 family protein [Enterococcus faecalis TX1346]
gi|315575258|gb|EFU87449.1| peptidase, S54 family protein [Enterococcus faecalis TX0309B]
gi|315576837|gb|EFU89028.1| peptidase, S54 family protein [Enterococcus faecalis TX0630]
gi|315582383|gb|EFU94574.1| peptidase, S54 family protein [Enterococcus faecalis TX0309A]
gi|323481711|gb|ADX81150.1| rhomboid family protein [Enterococcus faecalis 62]
gi|327536002|gb|AEA94836.1| rhomboid family protein [Enterococcus faecalis OG1RF]
gi|401674182|gb|EJS80541.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecalis ATCC 29212]
gi|402354963|gb|EJU89751.1| peptidase, S54 family [Enterococcus faecalis 599]
gi|402408930|gb|EJV41379.1| peptidase, S54 family [Enterococcus faecalis R508]
gi|427186107|emb|CCO73331.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis str. Symbioflor 1]
gi|429513460|gb|ELA03041.1| membrane-associated serine protease [Enterococcus faecalis OG1X]
gi|429515221|gb|ELA04739.1| membrane-associated serine protease [Enterococcus faecalis M7]
Length = 236
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LH 330
E+WR +TPMFLH G H+ L+ L G QV YG + + IY L GI+GN+ SF
Sbjct: 61 EYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG 120
Query: 331 TPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPV 388
TP + G + +F + GA++I +D M Q+ + ++ + + F V
Sbjct: 121 TPNSVSAGASTALFGLFGAFVILGRHFRD---NPAIMYMVQRYSMFIVINLLFNLFSSSV 177
Query: 389 DTWAHLGAAFTGII 402
D H+G G++
Sbjct: 178 DMMGHVGGLIGGLL 191
>gi|418931854|ref|ZP_13485689.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377713032|gb|EHT37245.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
Length = 470
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 5/136 (3%)
Query: 268 ILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327
++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G+ GN S
Sbjct: 180 VVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS 239
Query: 328 F-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
+T +VG +G +F +IG+ + +K K + + + IL +S +SN
Sbjct: 240 LSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNIN 298
Query: 387 PVDTWAHLGAAFTGII 402
V AH+G G++
Sbjct: 299 IV---AHIGGFIGGLL 311
>gi|49483798|ref|YP_041022.1| hypothetical protein SAR1626 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282904131|ref|ZP_06312019.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|282905958|ref|ZP_06313813.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908868|ref|ZP_06316686.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|283958313|ref|ZP_06375764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295428127|ref|ZP_06820759.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590907|ref|ZP_06949545.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|415682351|ref|ZP_11447667.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887902|ref|ZP_12532021.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|418564826|ref|ZP_13129247.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|418582476|ref|ZP_13146554.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418597192|ref|ZP_13160725.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|418601009|ref|ZP_13164457.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|418901054|ref|ZP_13455110.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909401|ref|ZP_13463397.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418923231|ref|ZP_13477147.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982555|ref|ZP_13530263.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418986221|ref|ZP_13533906.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|49241927|emb|CAG40621.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282327132|gb|EFB57427.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331250|gb|EFB60764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595749|gb|EFC00713.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|283790462|gb|EFC29279.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295128485|gb|EFG58119.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297575793|gb|EFH94509.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|315195451|gb|EFU25838.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341856931|gb|EGS97758.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|371975963|gb|EHO93255.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|374395428|gb|EHQ66695.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|374400256|gb|EHQ71375.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|377702451|gb|EHT26773.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377704265|gb|EHT28575.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377704836|gb|EHT29145.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377710886|gb|EHT35124.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377735190|gb|EHT59226.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377752048|gb|EHT75972.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
Length = 487
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|227519427|ref|ZP_03949476.1| S54 family peptidase [Enterococcus faecalis TX0104]
gi|424678054|ref|ZP_18114899.1| peptidase, S54 family [Enterococcus faecalis ERV103]
gi|424679974|ref|ZP_18116787.1| peptidase, S54 family [Enterococcus faecalis ERV116]
gi|424684441|ref|ZP_18121157.1| peptidase, S54 family [Enterococcus faecalis ERV129]
gi|424687903|ref|ZP_18124525.1| peptidase, S54 family [Enterococcus faecalis ERV25]
gi|424689750|ref|ZP_18126306.1| peptidase, S54 family [Enterococcus faecalis ERV31]
gi|424694204|ref|ZP_18130609.1| peptidase, S54 family [Enterococcus faecalis ERV37]
gi|424696292|ref|ZP_18132647.1| peptidase, S54 family [Enterococcus faecalis ERV41]
gi|424700479|ref|ZP_18136665.1| peptidase, S54 family [Enterococcus faecalis ERV62]
gi|424704746|ref|ZP_18140840.1| peptidase, S54 family [Enterococcus faecalis ERV63]
gi|424706937|ref|ZP_18142930.1| peptidase, S54 family [Enterococcus faecalis ERV65]
gi|424718163|ref|ZP_18147420.1| peptidase, S54 family [Enterococcus faecalis ERV68]
gi|424720446|ref|ZP_18149548.1| peptidase, S54 family [Enterococcus faecalis ERV72]
gi|424726078|ref|ZP_18154762.1| peptidase, S54 family [Enterococcus faecalis ERV73]
gi|424734075|ref|ZP_18162625.1| peptidase, S54 family [Enterococcus faecalis ERV81]
gi|424746066|ref|ZP_18174317.1| peptidase, S54 family [Enterococcus faecalis ERV85]
gi|424753580|ref|ZP_18181522.1| peptidase, S54 family [Enterococcus faecalis ERV93]
gi|227073134|gb|EEI11097.1| S54 family peptidase [Enterococcus faecalis TX0104]
gi|402352548|gb|EJU87394.1| peptidase, S54 family [Enterococcus faecalis ERV103]
gi|402355193|gb|EJU89971.1| peptidase, S54 family [Enterococcus faecalis ERV116]
gi|402361515|gb|EJU96072.1| peptidase, S54 family [Enterococcus faecalis ERV129]
gi|402362568|gb|EJU97093.1| peptidase, S54 family [Enterococcus faecalis ERV25]
gi|402366516|gb|EJV00887.1| peptidase, S54 family [Enterococcus faecalis ERV31]
gi|402371419|gb|EJV05578.1| peptidase, S54 family [Enterococcus faecalis ERV37]
gi|402373701|gb|EJV07766.1| peptidase, S54 family [Enterococcus faecalis ERV62]
gi|402378181|gb|EJV12058.1| peptidase, S54 family [Enterococcus faecalis ERV41]
gi|402381183|gb|EJV14896.1| peptidase, S54 family [Enterococcus faecalis ERV63]
gi|402382489|gb|EJV16152.1| peptidase, S54 family [Enterococcus faecalis ERV68]
gi|402386145|gb|EJV19654.1| peptidase, S54 family [Enterococcus faecalis ERV65]
gi|402389794|gb|EJV23175.1| peptidase, S54 family [Enterococcus faecalis ERV73]
gi|402390594|gb|EJV23928.1| peptidase, S54 family [Enterococcus faecalis ERV81]
gi|402393308|gb|EJV26536.1| peptidase, S54 family [Enterococcus faecalis ERV72]
gi|402397911|gb|EJV30902.1| peptidase, S54 family [Enterococcus faecalis ERV85]
gi|402403870|gb|EJV36518.1| peptidase, S54 family [Enterococcus faecalis ERV93]
Length = 236
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LH 330
E+WR +TPMFLH G H+ L+ L G QV YG + + IY L GI+GN+ SF
Sbjct: 61 EYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG 120
Query: 331 TPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPV 388
TP + G + +F + GA++I +D M Q+ + ++ + + F V
Sbjct: 121 TPNSVSAGASTALFGLFGAFVILGRHFRD---NPAIMYMVQRYSMFIVINLLFNLFSSSV 177
Query: 389 DTWAHLGAAFTGII 402
D H+G G++
Sbjct: 178 DMMGHVGGLIGGLL 191
>gi|315658175|ref|ZP_07911047.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
gi|315496504|gb|EFU84827.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
Length = 489
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 9/174 (5%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++I++ ++L I R S + G ++ ++ GEW+RL+T MFLH H+
Sbjct: 166 LITINIVIWLSMILLLNRFSNIKLLEM----GGLVHFNVVHGEWYRLITSMFLHFNFEHI 221
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V GP ++Y + G+ GN S +T + G +G +F +IGA
Sbjct: 222 LMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGNFLSLSFNTDTVSAGASGAIFGLIGA 281
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
+ +K K + + + IL S ++SN V+ AHLG +G++
Sbjct: 282 IIAMMIISKVYSRKMIGQLLIALVIL-IGFSLLLSN---VNIMAHLGGFISGLL 331
>gi|256963891|ref|ZP_05568062.1| membrane-associated serine protease [Enterococcus faecalis
HIP11704]
gi|257416957|ref|ZP_05593951.1| membrane-associated serine protease [Enterococcus faecalis ARO1/DG]
gi|307272082|ref|ZP_07553345.1| peptidase, S54 family protein [Enterococcus faecalis TX0855]
gi|307280665|ref|ZP_07561713.1| peptidase, S54 family protein [Enterococcus faecalis TX0860]
gi|256954387|gb|EEU71019.1| membrane-associated serine protease [Enterococcus faecalis
HIP11704]
gi|257158785|gb|EEU88745.1| membrane-associated serine protease [Enterococcus faecalis ARO1/DG]
gi|306504031|gb|EFM73248.1| peptidase, S54 family protein [Enterococcus faecalis TX0860]
gi|306511198|gb|EFM80205.1| peptidase, S54 family protein [Enterococcus faecalis TX0855]
Length = 236
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LH 330
E+WR +TPMFLH G H+ L+ L G QV YG + + IY L GI+GN+ SF
Sbjct: 61 EYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG 120
Query: 331 TPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPV 388
TP + G + +F + GA++I +D M Q+ + ++ + + F V
Sbjct: 121 TPNSVSAGASTALFGLFGAFVILGRHFRD---NPAIMYMVQRYSMFIVINLLFNLFSSSV 177
Query: 389 DTWAHLGAAFTGII 402
D H+G G++
Sbjct: 178 DMMGHVGGLIGGLL 191
>gi|330924089|ref|XP_003300510.1| hypothetical protein PTT_11758 [Pyrenophora teres f. teres 0-1]
gi|311325347|gb|EFQ91395.1| hypothetical protein PTT_11758 [Pyrenophora teres f. teres 0-1]
Length = 545
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+WWR +TP+FLH+G+ H+ + T G + K GP F L+Y GI G + +
Sbjct: 267 QWWRFITPIFLHAGIIHIGFNMLLQWTLGRDMEKEIGPLRFLLVYFSAGIFGFVLGGNYA 326
Query: 332 PE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
PE +VG +G +F I+ ++ N V + +F +L A++F+I +D
Sbjct: 327 PEGLTSVGCSGSLFGILALTMLDLLYNWSTRRSPVKDLLF--LLLDMAIAFVIGLLPGLD 384
Query: 390 TWAHLGAAFTGIIYG 404
++H+G G++ G
Sbjct: 385 NFSHIGGFCMGLVLG 399
>gi|257079952|ref|ZP_05574313.1| membrane-associated serine protease [Enterococcus faecalis JH1]
gi|294779541|ref|ZP_06744936.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
PC1.1]
gi|307269340|ref|ZP_07550690.1| peptidase, S54 family protein [Enterococcus faecalis TX4248]
gi|307289776|ref|ZP_07569713.1| peptidase, S54 family protein [Enterococcus faecalis TX0411]
gi|397700974|ref|YP_006538762.1| rhomboid family protein [Enterococcus faecalis D32]
gi|256987982|gb|EEU75284.1| membrane-associated serine protease [Enterococcus faecalis JH1]
gi|294453420|gb|EFG21827.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
PC1.1]
gi|306499161|gb|EFM68639.1| peptidase, S54 family protein [Enterococcus faecalis TX0411]
gi|306514339|gb|EFM82904.1| peptidase, S54 family protein [Enterococcus faecalis TX4248]
gi|397337613|gb|AFO45285.1| rhomboid family protein [Enterococcus faecalis D32]
Length = 236
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LH 330
E+WR +TPMFLH G H+ L+ L G QV YG + + IY L GI+GN+ SF
Sbjct: 61 EYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG 120
Query: 331 TPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPV 388
TP + G + +F + GA++I +D M Q+ + ++ + + F V
Sbjct: 121 TPNSVSAGASTALFGLFGAFVILGRHFRD---NPAIMYMVQRYSMFIVINLLFNLFSSSV 177
Query: 389 DTWAHLGAAFTGII 402
D H+G G++
Sbjct: 178 DMMGHVGGLIGGLL 191
>gi|387780641|ref|YP_005755439.1| hypothetical protein SARLGA251_14550 [Staphylococcus aureus subsp.
aureus LGA251]
gi|344177743|emb|CCC88222.1| putative membrane protein [Staphylococcus aureus subsp. aureus
LGA251]
Length = 487
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|403509381|ref|YP_006641019.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402803589|gb|AFR10999.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 256
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEW+RL+T FLH G+ H+ + +A+ GPQ+ + G F ++ LG +SG++ S +
Sbjct: 83 GEWYRLITAAFLHGGVLHLLFNSYAMYALGPQLERWLGHGRFLALWFLGALSGSVLSLIA 142
Query: 331 TP-EPTVGGTGPVFAIIGA 348
TP +P+VG +G +FA+ GA
Sbjct: 143 TPNQPSVGASGAIFALFGA 161
>gi|289550680|ref|YP_003471584.1| membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|385784306|ref|YP_005760479.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|418413982|ref|ZP_12987198.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180212|gb|ADC87457.1| Putative membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|339894562|emb|CCB53844.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|410877620|gb|EKS25512.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 485
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 9/174 (5%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++I++ ++L I R S + G ++ ++ GEW+RL+T MFLH H+
Sbjct: 162 LITINIVIWLSMILLLNRFSNIKLLDM----GGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V GP ++Y + G+ GN S +T + G +G +F +IGA
Sbjct: 218 LMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGNFLSLSFNTDTVSAGASGAIFGLIGA 277
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
+ +K K + + + IL S ++SN V+ AHLG +G++
Sbjct: 278 IIAMMIISKVYSRKMIGQLLIALVIL-IGFSLLLSN---VNIMAHLGGFISGLL 327
>gi|379021331|ref|YP_005297993.1| putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|418562599|ref|ZP_13127056.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
gi|359830640|gb|AEV78618.1| Putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|371973703|gb|EHO91051.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
Length = 487
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLISLVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|253733201|ref|ZP_04867366.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|417897863|ref|ZP_12541789.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
gi|253728741|gb|EES97470.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|341849365|gb|EGS90508.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
Length = 487
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|418892279|ref|ZP_13446392.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377730573|gb|EHT54640.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
Length = 487
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|257413126|ref|ZP_04742087.2| integral membrane protein [Roseburia intestinalis L1-82]
gi|257204520|gb|EEV02805.1| integral membrane protein [Roseburia intestinalis L1-82]
Length = 366
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 260 YGAKINELILVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
+G E I + +WWR+ T MF+H GL H+ + G ++ ++ G F F+IY L
Sbjct: 208 HGGMYPEFIQINHQWWRIFTAMFIHFGLPHLVNNMVIFFCVGSRLERAAGHFKMFVIYML 267
Query: 319 GGISGNLTSF---LHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
GI G L S+ L++ + V G +G VF IG + +++ + M A+
Sbjct: 268 SGIGGGLLSYFMMLYSGDYAVSAGASGAVFGTIGGLIWVVIRHRGRFEGLTVKGMILMAV 327
Query: 374 LSTALSFIISNFGPVDTWAHLGAAFTGII 402
LS F S G +D W H+G TG +
Sbjct: 328 LSLYYGF--STIG-IDNWCHVGGILTGFL 353
>gi|342874669|gb|EGU76647.1| hypothetical protein FOXB_12836 [Fusarium oxysporum Fo5176]
Length = 572
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 12/169 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+ IN+ +W+R +T +F+H+GL H+ + LT ++ + GP F L+Y
Sbjct: 317 FNGDINQSPEPNQWYRFITSIFMHAGLIHIIFNLLLQLTIAKEMEMAIGPVRFLLVYMSA 376
Query: 320 GISGNLTSFLHTP--EPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVSERMFQKAIL 374
GI GN+ + P +P+VG +G +F II L+Y ++++ KD+ +F IL
Sbjct: 377 GIFGNIMGGNYAPPGQPSVGASGALFGIIALVLLDLLYSWKDRRNPVKDL---LF--IIL 431
Query: 375 STALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQE 423
++F++ +D + H+G G+ G C L R QE
Sbjct: 432 DMVIAFVLGLLPGLDNFVHIGGFLMGLSLG--VCVLHSPNSLRRRMGQE 478
>gi|414160916|ref|ZP_11417179.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876595|gb|EKS24493.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 485
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 11/179 (6%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
I ++I + +F+F I + N L +G ++ ++ GE +RL++ MF+H H
Sbjct: 163 IAINIIIWLFMFLIINAFTNRSL------LDWGGLVHFNVVHGEIYRLISSMFIHFNFEH 216
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIG 347
+ ++ +L FG V G + IY + GI GN+ S L T +VG +G +F +IG
Sbjct: 217 ILMNMLSLFIFGKLVEAIAGHWKMLGIYFISGIFGNIVSLALDTNSISVGASGAIFGLIG 276
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
+ + +K K + + + A+L T S ++N V+ +AHLG G++ F+
Sbjct: 277 SLFAIMYLSKQYTPKMLLQLVGVLALL-TVFSLFMAN---VNIYAHLGGFIGGLLATFI 331
>gi|15924539|ref|NP_372073.1| hypothetical protein SAV1549 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927129|ref|NP_374662.1| hypothetical protein SA1379 [Staphylococcus aureus subsp. aureus
N315]
gi|57651942|ref|YP_186446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87160848|ref|YP_494204.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|151221664|ref|YP_001332486.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979867|ref|YP_001442126.1| hypothetical protein SAHV_1536 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509778|ref|YP_001575437.1| peptidase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253314920|ref|ZP_04838133.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006335|ref|ZP_05144936.2| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257425674|ref|ZP_05602098.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428335|ref|ZP_05604733.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430972|ref|ZP_05607352.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433660|ref|ZP_05610018.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436574|ref|ZP_05612618.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|258437381|ref|ZP_05689365.1| peptidase [Staphylococcus aureus A9299]
gi|258450622|ref|ZP_05698684.1| peptidase [Staphylococcus aureus A5948]
gi|262049127|ref|ZP_06022004.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262051211|ref|ZP_06023435.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|269203177|ref|YP_003282446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282911187|ref|ZP_06318989.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914356|ref|ZP_06322142.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282916819|ref|ZP_06324577.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282919325|ref|ZP_06327060.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282920098|ref|ZP_06327823.1| peptidase [Staphylococcus aureus A9765]
gi|282924650|ref|ZP_06332318.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|283770625|ref|ZP_06343517.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|284024608|ref|ZP_06379006.1| rhomboid family protein [Staphylococcus aureus subsp. aureus 132]
gi|293503430|ref|ZP_06667277.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|293510447|ref|ZP_06669153.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|293530987|ref|ZP_06671669.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|294848580|ref|ZP_06789326.1| peptidase [Staphylococcus aureus A9754]
gi|304380862|ref|ZP_07363522.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|384547782|ref|YP_005737035.1| membrane protein [Staphylococcus aureus subsp. aureus ED133]
gi|384870090|ref|YP_005752804.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|385781834|ref|YP_005758005.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|387143156|ref|YP_005731549.1| hypothetical protein SATW20_15450 [Staphylococcus aureus subsp.
aureus TW20]
gi|415686263|ref|ZP_11450400.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|416840018|ref|ZP_11903337.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|416845827|ref|ZP_11906228.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|417654442|ref|ZP_12304161.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|417797331|ref|ZP_12444527.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|417892437|ref|ZP_12536486.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|417905331|ref|ZP_12549142.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|418277349|ref|ZP_12891936.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|418285050|ref|ZP_12897750.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|418316423|ref|ZP_12927861.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|418319401|ref|ZP_12930781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|418321319|ref|ZP_12932665.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|418569512|ref|ZP_13133838.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|418574454|ref|ZP_13138623.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|418579474|ref|ZP_13143569.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418599967|ref|ZP_13163441.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|418641900|ref|ZP_13204105.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|418645086|ref|ZP_13207214.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|418646803|ref|ZP_13208896.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|418650585|ref|ZP_13212603.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|418658392|ref|ZP_13220120.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|418875489|ref|ZP_13429745.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418903856|ref|ZP_13457897.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418912160|ref|ZP_13466141.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418914647|ref|ZP_13468619.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418925809|ref|ZP_13479711.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418948536|ref|ZP_13500834.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|419773145|ref|ZP_14299156.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|421148571|ref|ZP_15608231.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742667|ref|ZP_16796670.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|424768990|ref|ZP_18196227.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|424785384|ref|ZP_18212187.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|440707269|ref|ZP_20887968.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443640018|ref|ZP_21124018.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|448743065|ref|ZP_21724979.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
gi|13701347|dbj|BAB42641.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247320|dbj|BAB57711.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|57286128|gb|AAW38222.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87126822|gb|ABD21336.1| peptidase, rhomboid family [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|150374464|dbj|BAF67724.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156722002|dbj|BAF78419.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368587|gb|ABX29558.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257271368|gb|EEV03514.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275176|gb|EEV06663.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278402|gb|EEV09038.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281753|gb|EEV11890.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257283925|gb|EEV14048.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|257848586|gb|EEV72574.1| peptidase [Staphylococcus aureus A9299]
gi|257861780|gb|EEV84579.1| peptidase [Staphylococcus aureus A5948]
gi|259160848|gb|EEW45868.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|259162796|gb|EEW47361.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262075467|gb|ACY11440.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|269941039|emb|CBI49423.1| putative membrane protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313485|gb|EFB43880.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|282317135|gb|EFB47509.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282319306|gb|EFB49658.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282321537|gb|EFB51862.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282324882|gb|EFB55192.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282594446|gb|EFB99431.1| peptidase [Staphylococcus aureus A9765]
gi|283460772|gb|EFC07862.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|290920255|gb|EFD97321.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|291095096|gb|EFE25361.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|291466811|gb|EFF09331.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|294824606|gb|EFG41029.1| peptidase [Staphylococcus aureus A9754]
gi|298694831|gb|ADI98053.1| probable membrane protein [Staphylococcus aureus subsp. aureus
ED133]
gi|304340589|gb|EFM06523.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315198756|gb|EFU29084.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|320144103|gb|EFW35872.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323440447|gb|EGA98159.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|323443221|gb|EGB00839.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|329314225|gb|AEB88638.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|329730828|gb|EGG67206.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|334266823|gb|EGL85293.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|341843607|gb|EGS84829.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|341857602|gb|EGS98414.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|364522823|gb|AEW65573.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|365172061|gb|EHM62806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|365173639|gb|EHM64128.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|365225551|gb|EHM66794.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|365240520|gb|EHM81292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|365241107|gb|EHM81862.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|371979181|gb|EHO96416.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|371985641|gb|EHP02702.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|374395556|gb|EHQ66819.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|375018355|gb|EHS11935.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|375023919|gb|EHS17364.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|375027871|gb|EHS21229.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|375032097|gb|EHS25352.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|375038662|gb|EHS31625.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|375371869|gb|EHS75629.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|377697501|gb|EHT21856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377722417|gb|EHT46543.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377742871|gb|EHT66856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377744878|gb|EHT68855.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377758149|gb|EHT82037.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377769561|gb|EHT93329.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|383972969|gb|EID88990.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|394331714|gb|EJE57797.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|402348381|gb|EJU83373.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|408423672|emb|CCJ11083.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408425662|emb|CCJ13049.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408427649|emb|CCJ15012.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408429638|emb|CCJ26803.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408431625|emb|CCJ18940.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408433619|emb|CCJ20904.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408435611|emb|CCJ22871.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408437595|emb|CCJ24838.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|421956794|gb|EKU09123.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|436506025|gb|ELP41864.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443406293|gb|ELS64877.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|445563752|gb|ELY19909.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|51860142|gb|AAU11321.1| rhomboid 2 [Toxoplasma gondii]
gi|221481683|gb|EEE20059.1| rhomboid 2 protease [Toxoplasma gondii GT1]
Length = 284
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 21/189 (11%)
Query: 227 ISILVSIDVAVFLFEIASPIRNSEFGFFSLP---LLYGAKINELILVGEWWRLVTPMFLH 283
I I+ + +AV++ +A+ + +E P +++GA I ELI VGE WRL+ P+FLH
Sbjct: 62 IIIISFVQIAVYIASLAAGLAPNEI-LAPTPQTLVMFGANIPELIRVGEIWRLICPLFLH 120
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS---FLHTPEPTVGGTG 340
LFH+ ++ W + G + + YG +Y G+ N+ S + G +
Sbjct: 121 LNLFHILMNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQQMKAGAST 180
Query: 341 PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF---IISNFGP-VDTWAHLGA 396
VFA+IG Q LI + +R AI+S + +S+FG +D+ H+G
Sbjct: 181 AVFALIGV----QLAELALIWHAIQDR--NSAIISVCICLFFVFVSSFGSHMDSVGHIG- 233
Query: 397 AFTGIIYGF 405
G++ GF
Sbjct: 234 ---GLVMGF 239
>gi|410458664|ref|ZP_11312422.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
gi|409931259|gb|EKN68245.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
Length = 198
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 258 LLY-GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIY 316
LLY G N + GE+WRL+TP+FLHS H+ + ++L FGP + + G F + Y
Sbjct: 41 LLYLGIGSNYDVYNGEYWRLLTPIFLHSSFGHMLFNSFSLAIFGPALERMLGKPIFIITY 100
Query: 317 TLGGISGNLTSFLHTP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL 374
L G+ N+ ++ P +G + +F + G +L KDLI + S+ + ++
Sbjct: 101 LLSGVLANIGTYFVAPINYYHLGSSSAIFGLFGVYLYMVIYRKDLIDRMNSQIIISILVI 160
Query: 375 STALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
++F S+ ++ +AH+ G+I G P+V
Sbjct: 161 GMVMTFFRSD---INIYAHI----FGLIGGAALAPIV 190
>gi|404417227|ref|ZP_10999031.1| hypothetical protein SARL_05123 [Staphylococcus arlettae CVD059]
gi|403490425|gb|EJY95966.1| hypothetical protein SARL_05123 [Staphylococcus arlettae CVD059]
Length = 480
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 9/173 (5%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I+V ++L I R SE + G ++ ++ GEW+RL++ +FLH H+
Sbjct: 163 LIGINVIIWLLMILFFNRFSELKLLDV----GGLVHFNVVHGEWYRLISSIFLHYNFEHI 218
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +I+ G+ N S + +VG +G +F +IG+
Sbjct: 219 LMNMLSLFIFGKIVESIVGHWRMLVIFLFSGLFANFASLSFNIDTISVGASGAIFGLIGS 278
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGI 401
+ + +K K V + + IL +S + N ++ WAH+G G+
Sbjct: 279 LFGFMYISKIFERKLVGQLLIALVIL-IGISLFMDN---INVWAHIGGFIGGL 327
>gi|21283230|ref|NP_646318.1| hypothetical protein MW1501 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486385|ref|YP_043606.1| hypothetical protein SAS1487 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253732202|ref|ZP_04866367.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|297207732|ref|ZP_06924167.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300911813|ref|ZP_07129256.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|418934519|ref|ZP_13488341.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418988616|ref|ZP_13536288.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|448740624|ref|ZP_21722600.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
gi|21204670|dbj|BAB95366.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244828|emb|CAG43288.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253723991|gb|EES92720.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|296887749|gb|EFH26647.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300886059|gb|EFK81261.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|377717709|gb|EHT41884.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377770613|gb|EHT94374.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|445548591|gb|ELY16841.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|384867478|ref|YP_005747674.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|417901080|ref|ZP_12544957.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|418652792|ref|ZP_13214755.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|418955633|ref|ZP_13507570.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
gi|312437983|gb|ADQ77054.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|341846239|gb|EGS87436.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|375020960|gb|EHS14467.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|375370719|gb|EHS74517.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
Length = 426
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 129 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 188
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 189 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 247
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 248 LFMSNINIV---AHIGGFIGGLL 267
>gi|418313141|ref|ZP_12924635.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
gi|365236412|gb|EHM77301.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|384550376|ref|YP_005739628.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302333225|gb|ADL23418.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|258423202|ref|ZP_05686095.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|417889989|ref|ZP_12534068.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|418284049|ref|ZP_12896781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|418558986|ref|ZP_13123533.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|418889364|ref|ZP_13443497.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|257846652|gb|EEV70673.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|341855682|gb|EGS96526.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|365164913|gb|EHM56743.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|371976336|gb|EHO93626.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|377752872|gb|EHT76790.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|443287776|ref|ZP_21026871.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
gi|385882192|emb|CCH21804.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
Length = 303
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
G+W+RLVT MFLH G+ H+ L+ WAL G + + GP F +Y + G+ GN+ ++L
Sbjct: 137 GQWYRLVTAMFLHYGVIHLLLNMWALWVLGRSLEANLGPLRFGALYLIAGLGGNVAAYLF 196
Query: 331 TPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
+ + T G + VF + A +I + + + +D+S+ + IL L F ++ G +
Sbjct: 197 SAQNSATAGASTAVFGLFAALIIIERK----LGRDISQVI---PILVINLVFTLTVPG-I 248
Query: 389 DTWAHLGAAFTG 400
HLG G
Sbjct: 249 SIPGHLGGLVVG 260
>gi|148268033|ref|YP_001246976.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|150394101|ref|YP_001316776.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257793625|ref|ZP_05642604.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|258411075|ref|ZP_05681355.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|258420121|ref|ZP_05683076.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|258446794|ref|ZP_05694948.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|258448708|ref|ZP_05696820.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|258453525|ref|ZP_05701503.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282928182|ref|ZP_06335787.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|295406672|ref|ZP_06816477.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297245746|ref|ZP_06929611.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|384864770|ref|YP_005750129.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|387150692|ref|YP_005742256.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|415692667|ref|ZP_11454587.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|417651337|ref|ZP_12301100.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|418424698|ref|ZP_12997812.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427692|ref|ZP_13000697.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418433677|ref|ZP_13006269.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437172|ref|ZP_13008968.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440072|ref|ZP_13011773.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443090|ref|ZP_13014689.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446152|ref|ZP_13017626.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418449166|ref|ZP_13020552.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451979|ref|ZP_13023313.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454973|ref|ZP_13026232.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457851|ref|ZP_13029050.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418640342|ref|ZP_13202574.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|418878467|ref|ZP_13432702.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881233|ref|ZP_13435450.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884081|ref|ZP_13438274.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418895312|ref|ZP_13449407.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418991477|ref|ZP_13539138.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419784633|ref|ZP_14310396.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|147741102|gb|ABQ49400.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|149946553|gb|ABR52489.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257787597|gb|EEV25937.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|257840225|gb|EEV64689.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|257843832|gb|EEV68226.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|257854369|gb|EEV77318.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|257857986|gb|EEV80875.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|257864256|gb|EEV87006.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282589989|gb|EFB95071.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|285817231|gb|ADC37718.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|294968419|gb|EFG44443.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297177397|gb|EFH36649.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|312829937|emb|CBX34779.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|315129827|gb|EFT85817.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|329727521|gb|EGG63977.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|375014906|gb|EHS08577.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|377694589|gb|EHT18954.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377695118|gb|EHT19482.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377714416|gb|EHT38617.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377723599|gb|EHT47724.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377730976|gb|EHT55034.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|383363843|gb|EID41169.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|387717980|gb|EIK05975.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387719477|gb|EIK07422.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387724901|gb|EIK12532.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387727160|gb|EIK14692.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730222|gb|EIK17629.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735290|gb|EIK22419.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387736766|gb|EIK23854.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387736929|gb|EIK24015.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387744860|gb|EIK31624.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745026|gb|EIK31788.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387746619|gb|EIK33348.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|373471259|ref|ZP_09562320.1| peptidase, S54 family [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371760666|gb|EHO49340.1| peptidase, S54 family [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 210
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 8/154 (5%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L YGA + I GE++RL+T MF+H G+ H+A + L+ G ++ G F FF+IY
Sbjct: 40 LRYGACFPDNIKGGEYYRLITSMFMHFGIEHIANNMLILVLLGGKLEDIMGHFKFFIIYM 99
Query: 318 LGGISGNLTS-----FLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA 372
L GI NL S + G +G +F ++GA L +K I K++S ++Q
Sbjct: 100 LSGILANLASDWAQTMTGDFAVSAGASGAIFGVVGALLASLVLSKGKI-KNLS--LYQIV 156
Query: 373 ILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
+ + + VD AH+G A +G+ G +
Sbjct: 157 VSLGLMLYAGFKTTGVDNIAHVGGAVSGVFIGLI 190
>gi|217957809|ref|YP_002336353.1| rhomboid family protein [Bacillus cereus AH187]
gi|375282339|ref|YP_005102774.1| rhomboid family protein [Bacillus cereus NC7401]
gi|423357185|ref|ZP_17334784.1| hypothetical protein IAU_05233 [Bacillus cereus IS075]
gi|423376166|ref|ZP_17353480.1| hypothetical protein IC5_05196 [Bacillus cereus AND1407]
gi|423572350|ref|ZP_17548557.1| hypothetical protein II7_05550 [Bacillus cereus MSX-A12]
gi|217066635|gb|ACJ80885.1| rhomboid family protein [Bacillus cereus AH187]
gi|358350862|dbj|BAL16034.1| rhomboid family protein [Bacillus cereus NC7401]
gi|401075813|gb|EJP84182.1| hypothetical protein IAU_05233 [Bacillus cereus IS075]
gi|401089157|gb|EJP97329.1| hypothetical protein IC5_05196 [Bacillus cereus AND1407]
gi|401197717|gb|EJR04645.1| hypothetical protein II7_05550 [Bacillus cereus MSX-A12]
Length = 190
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 257 PLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIY 316
PL A NE I GEWWRL+T + +H L H + L G + K G F+F +I+
Sbjct: 31 PLFSMAASNEYIAKGEWWRLLTSLLVHVDLQHFLFNSICLFILGSSIEKQLGHFSFIIIF 90
Query: 317 TLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
L GI GN++S+L P + G +G +F ++GA L
Sbjct: 91 FLSGILGNMSSYLIMPHEYIHAGASGGIFGLLGAQL 126
>gi|386831159|ref|YP_006237813.1| hypothetical protein SAEMRSA15_14690 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417798923|ref|ZP_12446077.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|418654972|ref|ZP_13216857.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|334275085|gb|EGL93386.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|375038535|gb|EHS31510.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|385196551|emb|CCG16180.1| putative membrane protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|386729250|ref|YP_006195633.1| integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|387602889|ref|YP_005734410.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|404478900|ref|YP_006710330.1| hypothetical protein C248_1592 [Staphylococcus aureus 08BA02176]
gi|418309989|ref|ZP_12921539.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|418978272|ref|ZP_13526073.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|283470827|emb|CAQ50038.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|365237446|gb|EHM78292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|379993888|gb|EIA15333.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|384230543|gb|AFH69790.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|404440389|gb|AFR73582.1| putative membrane protein [Staphylococcus aureus 08BA02176]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|296275094|ref|ZP_06857601.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MR1]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|255971815|ref|ZP_05422401.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255962833|gb|EET95309.1| conserved hypothetical protein [Enterococcus faecalis T1]
Length = 230
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LH 330
E+WR +TPMFLH G H+ L+ L G QV YG + + IY L GI+GN+ SF
Sbjct: 55 EYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG 114
Query: 331 TPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPV 388
TP + G + +F + GA++I +D M Q+ + ++ + + F V
Sbjct: 115 TPNSVSAGASTALFGLFGAFVILGRHFRD---NPAIMYMVQRYSMFIVINLLFNLFSSSV 171
Query: 389 DTWAHLGAAFTGII 402
D H+G G++
Sbjct: 172 DMMGHVGGLIGGLL 185
>gi|422746158|ref|ZP_16800091.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320140566|gb|EFW32420.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|418430534|ref|ZP_13003445.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387718274|gb|EIK06258.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|255974810|ref|ZP_05425396.1| membrane-associated serine protease [Enterococcus faecalis T2]
gi|255967682|gb|EET98304.1| membrane-associated serine protease [Enterococcus faecalis T2]
Length = 230
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LH 330
E+WR +TPMFLH G H+ L+ L G QV YG + + IY L GI+GN+ SF
Sbjct: 55 EYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG 114
Query: 331 TPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPV 388
TP + G + +F + GA++I +D M Q+ + ++ + + F V
Sbjct: 115 TPNSVSAGASTALFGLFGAFVILGRHFRD---NPAIMYMVQRYSMFIVINLLFNLFSSSV 171
Query: 389 DTWAHLGAAFTGII 402
D H+G G++
Sbjct: 172 DMMGHVGGLIGGLL 185
>gi|221140031|ref|ZP_03564524.1| peptidase [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|384862151|ref|YP_005744871.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|302751380|gb|ADL65557.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|147810722|emb|CAN71797.1| hypothetical protein VITISV_026278 [Vitis vinifera]
Length = 754
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL+T ++LH G+FH+ + +LL G ++ + +G L+Y + G G+L S L E
Sbjct: 130 WRLITCIWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKVGLLYVISGFGGSLLSGLFIQE 189
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++G L N + A ++ F ++ A++ + VD +A
Sbjct: 190 NISVGASGALFGLLGGMLSELITNWSIYANKLAA--FLTLVIIIAINLAVGILPHVDNFA 247
Query: 393 HLGAAFTGIIYGFLTCPLVQLG 414
H+G +G + GF+ Q G
Sbjct: 248 HIGGFLSGFLLGFVFLIRPQFG 269
>gi|389852799|ref|YP_006355033.1| Peptidase, putative, Rhomboid-like protein [Pyrococcus sp. ST04]
gi|388250105|gb|AFK22958.1| putative Peptidase, putative, Rhomboid-like protein [Pyrococcus sp.
ST04]
Length = 196
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 21/168 (12%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILV-GEWWRLVTPMFLHSGLFH 288
L+ I AVF++E+ F +L A+IN L+L+ GEWWRL+T +F+H G H
Sbjct: 14 LLVIITAVFVYEVIVG--------FDKAILQLAQINGLVLLNGEWWRLITAIFVHMGFVH 65
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAII 346
AL+ + L G + G F +++ L + GN+ S P G +G +F I+
Sbjct: 66 FALNSFWLFYLGIDLEGIIGMKRFLIVFFLSALVGNILSLFTLPLYVASGGASGGLFGIV 125
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAH 393
GA L + V R QKA+++ + F+I++ P V+ AH
Sbjct: 126 GA---------SLSIEGVLRRNMQKALINAIILFLINSILPGVNAIAH 164
>gi|417649370|ref|ZP_12299174.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|440735000|ref|ZP_20914611.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|329728476|gb|EGG64913.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|436431095|gb|ELP28449.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|258443587|ref|ZP_05691926.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282893050|ref|ZP_06301284.1| peptidase [Staphylococcus aureus A8117]
gi|443635576|ref|ZP_21119704.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
gi|257850993|gb|EEV74936.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282764368|gb|EFC04494.1| peptidase [Staphylococcus aureus A8117]
gi|443409217|gb|ELS67715.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
Length = 487
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|152999493|ref|YP_001365174.1| rhomboid family protein [Shewanella baltica OS185]
gi|151364111|gb|ABS07111.1| Rhomboid family protein [Shewanella baltica OS185]
Length = 547
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 3/141 (2%)
Query: 255 SLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFL 314
S L +GA +L GEWWRL+T F+H GL H+AL+ + L G + G + FL
Sbjct: 357 SFMLEWGANFRPKVLAGEWWRLITSTFIHGGLAHLALNLYGLFFVGSFLEPVLGKWRLFL 416
Query: 315 IYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
Y + G+ ++ S + +VG +G + ++G +I+ + K + +D++ +
Sbjct: 417 AYLITGVLASIASICWYDATVSVGASGAIMGLLGILVIWAW--KKIFPEDINWVLSINLA 474
Query: 374 LSTALSFIISNFGPVDTWAHL 394
+S + G VD AH+
Sbjct: 475 FFVTISLVAGLLGGVDNAAHI 495
>gi|418920630|ref|ZP_13474562.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377764356|gb|EHT88209.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
Length = 370
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-L 329
GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G+ GN S
Sbjct: 83 GEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSF 142
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
+T +VG +G +F +IG+ + +K K + + + IL +S +SN V
Sbjct: 143 NTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIV- 200
Query: 390 TWAHLGAAFTGII 402
AH+G G++
Sbjct: 201 --AHIGGFIGGLL 211
>gi|418886814|ref|ZP_13440962.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377725767|gb|EHT49880.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
Length = 314
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-L 329
GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G+ GN S
Sbjct: 27 GEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSF 86
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
+T +VG +G +F +IG+ + +K K + + + IL +S +SN V
Sbjct: 87 NTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIV- 144
Query: 390 TWAHLGAAFTGII 402
AH+G G++
Sbjct: 145 --AHIGGFIGGLL 155
>gi|337283825|ref|YP_004623299.1| Peptidase [Pyrococcus yayanosii CH1]
gi|334899759|gb|AEH24027.1| Peptidase, putative [Pyrococcus yayanosii CH1]
Length = 198
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 21/168 (12%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELIL-VGEWWRLVTPMFLHSGLFH 288
L++I VF++E+ F ++ A+IN L+ G+WWRLVT +F+H G H
Sbjct: 18 LLTIIALVFIYELIVG--------FDTAIVQLAQINLLVFYAGQWWRLVTAIFVHMGFIH 69
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAII 346
AL+ + L G + G F L++ L I GN+ S P G +G +F I+
Sbjct: 70 FALNTFWLFYLGMDLEGIVGSKRFLLVFFLSAIVGNVLSLFTLPLDVASGGASGGLFGIV 129
Query: 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAH 393
GA L + V +R QKA+++ + F+I++ P V+ AH
Sbjct: 130 GA---------SLAIEGVLKRNMQKALMNAIILFLINSIFPGVNIVAH 168
>gi|417003054|ref|ZP_11942140.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478800|gb|EGC81910.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
Length = 227
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGA + L+ G+WWR+++ F+H G FH+ + + L GP + YG F +IY L
Sbjct: 43 YGAMVKPLVHDGQWWRILSAAFIHIGFFHIMFNMYFLYNIGPLFERLYGSINFLIIYLLA 102
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS-T 376
G+ GNL ++ TV G + ++ + G + KD D R + +S
Sbjct: 103 GVMGNLFTYAFGDVSTVSAGASTSLYGMFGLAMGLMINYKD----DAVLRGLGASFISII 158
Query: 377 ALSFIISNFGP-VDTWAHLGAAFTGII 402
++ I S P + HLG G++
Sbjct: 159 VINLIYSLLAPGIGIQGHLGGFLAGVL 185
>gi|82751152|ref|YP_416893.1| hypothetical protein SAB1421c [Staphylococcus aureus RF122]
gi|82656683|emb|CAI81110.1| probable membrane protein [Staphylococcus aureus RF122]
Length = 487
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|440302909|gb|ELP95215.1| hypothetical protein EIN_430110 [Entamoeba invadens IP1]
Length = 335
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 9/150 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
E WRL+TP+FLH+G+ H+ + L G + + F ++Y +GGI GN S +
Sbjct: 155 ELWRLITPIFLHAGIIHLVCNLSMQLRLGMIIERRMNTLRFLIVYFVGGIIGNCFSVMIF 214
Query: 332 PEPT-VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG +G + A+ G +LI NK+ + + ++ST + F++S +D
Sbjct: 215 PTTQGVGASGALLAVFGGFLIDIILNKNKFPSRQWISLIGQLLISTIIIFVLSFMPGIDY 274
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRN 420
AH I+GF+ + LG +N
Sbjct: 275 AAH--------IFGFIGGAVAALGLLCHQN 296
>gi|422007967|ref|ZP_16354952.1| hypothetical protein OOC_07613 [Providencia rettgeri Dmel1]
gi|414096102|gb|EKT57761.1| hypothetical protein OOC_07613 [Providencia rettgeri Dmel1]
Length = 293
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 41/214 (19%)
Query: 233 IDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVA 290
+++ V+ +++ A+P+ + E LL+GA + +L L G+WWR M LHSG H+A
Sbjct: 29 LNIVVYFYQLNYAAPLDSQENNL----LLFGANVYQLSLTGDWWRYPVSMVLHSGGMHLA 84
Query: 291 LSCWALLTFGPQVCKSYGPFTFFLIYTLGGI----------------------SGNLTSF 328
L+ AL G + ++YG F IY GI S N +
Sbjct: 85 LNTLALFVIGIECERTYGKFRMLAIYLFSGIGAAFFSAYWQYSEAIKETASRASMNAWNS 144
Query: 329 LHTPEPTV------GGTGPVFAIIGAWLIYQFQ-----NKDLIAKDVSERMFQKAILSTA 377
L+ P+ TV G +G + + A +I + N L ++ +R I A
Sbjct: 145 LYLPDNTVYITVGIGASGAIMGLAAASVIDLLKRINHPNLSLEERNQLKRPLYNIIGMIA 204
Query: 378 LSFIISNFGPVDTWAHLGAAFTG-IIYG-FLTCP 409
L+ I +D AH+G A G +I G F+ P
Sbjct: 205 LTLINGVQSGIDNAAHIGGAILGAVISGAFVLAP 238
>gi|384250516|gb|EIE23995.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 306
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
AK + + GE++RL+T FLH H+ SC+AL T P + + G F Y L +
Sbjct: 92 AKTDVGVEAGEYYRLITANFLHDSFVHLGSSCYALATVAPAIEEVLGWDIFLATYLLSSV 151
Query: 322 SGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDL 359
G++ +F+ TVG + +F +IGA + Y +N+ L
Sbjct: 152 GGSVGTFILGDAVTVGASSGIFGVIGALVAYLLKNRSL 189
>gi|291540429|emb|CBL13540.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Roseburia intestinalis XB6B4]
Length = 348
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 260 YGAKINELILVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
+G E I + +WWR+ T MF+H GL H+ + G ++ ++ G F F+IY L
Sbjct: 190 HGGMYPEFIQINHQWWRIFTAMFIHFGLPHLVNNMVIFCCVGSRLERAAGHFKMFVIYML 249
Query: 319 GGISGNLTSF---LHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
GI G L S+ L++ + V G +G VF IG + +++ + M A+
Sbjct: 250 SGIGGGLLSYFMMLYSGDYAVSAGASGAVFGTIGGLIWVVIRHRGRFKGLTVKGMILMAV 309
Query: 374 LSTALSFIISNFGPVDTWAHLGAAFTGII 402
LS F S G +D W H+G TG +
Sbjct: 310 LSLYYGF--STIG-IDNWCHVGGILTGFL 335
>gi|392989212|ref|YP_006487805.1| small hydrophobic molecule transporter protein [Enterococcus hirae
ATCC 9790]
gi|392336632|gb|AFM70914.1| small hydrophobic molecule transporter protein [Enterococcus hirae
ATCC 9790]
Length = 232
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 251 FGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPF 310
F F ++P G +++ EWWR +TP+F+H GL H ++ L G Q+ YG +
Sbjct: 36 FPFLNIPAYLGMFGPSIVVGNEWWRFITPIFIHFGLVHFVMNSLILYFMGDQIETLYGHW 95
Query: 311 TFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERM 368
FFLIY GI GN SF + G + +F + GA + F K+ ++
Sbjct: 96 RFFLIYLFSGILGNAASFAFNDLGVLSGGASTSLFGLFGALFVLGFHFKN---NSQVRQL 152
Query: 369 FQKAILSTALSFIISNFGPVDT 390
+ +L +SF+ FG DT
Sbjct: 153 IRHYMLFIVISFV---FGLTDT 171
>gi|291537195|emb|CBL10307.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Roseburia intestinalis M50/1]
Length = 348
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 260 YGAKINELILVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
+G E I + +WWR+ T MF+H GL H+ + G ++ ++ G F F+IY L
Sbjct: 190 HGGMYPEFIQINHQWWRIFTAMFIHFGLPHLVNNMVIFCCVGSRLERAAGHFKMFVIYML 249
Query: 319 GGISGNLTSF---LHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
GI G L S+ L++ + V G +G VF IG + +++ + M A+
Sbjct: 250 SGIGGGLLSYFMMLYSGDYAVSAGASGAVFGTIGGLIWVVIRHRGRFKGLTVKGMILMAV 309
Query: 374 LSTALSFIISNFGPVDTWAHLGAAFTGII 402
LS F S G +D W H+G TG +
Sbjct: 310 LSLYYGF--STIG-IDNWCHVGGILTGFL 335
>gi|256958014|ref|ZP_05562185.1| membrane-associated serine protease [Enterococcus faecalis DS5]
gi|256948510|gb|EEU65142.1| membrane-associated serine protease [Enterococcus faecalis DS5]
Length = 236
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LH 330
E+WR +TPMFLH G H+ L+ + G QV YG + + IY L GI+GN+ SF
Sbjct: 61 EYWRFITPMFLHIGFMHIILNMVTIYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG 120
Query: 331 TPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPV 388
TP + G + +F + GA++I +D M Q+ + ++ + + F V
Sbjct: 121 TPNSVSAGASTALFGLFGAFVILGRHFRD---NPAIMYMVQRYSMFIVINLLFNLFSSSV 177
Query: 389 DTWAHLGAAFTGII 402
D H+G G++
Sbjct: 178 DMMGHVGGLIGGLL 191
>gi|206977078|ref|ZP_03237978.1| rhomboid family protein [Bacillus cereus H3081.97]
gi|222094009|ref|YP_002528060.1| rhomboid family protein [Bacillus cereus Q1]
gi|206744727|gb|EDZ56134.1| rhomboid family protein [Bacillus cereus H3081.97]
gi|221238058|gb|ACM10768.1| rhomboid family protein [Bacillus cereus Q1]
Length = 190
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 257 PLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIY 316
PL A NE I GEWWRL+T + +H L H + L G + K G F+F +I+
Sbjct: 31 PLFSMAASNEYIAKGEWWRLLTSLLVHVDLQHFLFNSICLFILGSSIEKQLGHFSFIIIF 90
Query: 317 TLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
L GI GN++S+L P + G +G +F ++GA L
Sbjct: 91 FLSGILGNMSSYLIMPHEYIHAGASGGIFGLLGAQL 126
>gi|167045542|gb|ABZ10194.1| putative Rhomboid family protein [uncultured marine microorganism
HF4000_APKG10H12]
Length = 277
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 10/145 (6%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
G W L+T M+LH L H+ + + GP V + YG FL++ + G +G L S +
Sbjct: 107 GWWLTLLTAMYLHGSLLHIVFNVMWIRNLGPAVTEVYGAGRAFLLFNISGAAGFLASNVM 166
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
+ PT+G +G +F ++ A ++Y + + ++++++Q AI+ F++ ++
Sbjct: 167 SNVPTIGASGSIFGLLAALIVYGRRRGSSV---MTQQLWQWAIILGVFGFVMPG---INN 220
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGD 415
WAH G G G++ L+ L D
Sbjct: 221 WAHGG----GFAAGWIAAHLMSLDD 241
>gi|260587072|ref|ZP_05852985.1| rhomboid protease GluP [Blautia hansenii DSM 20583]
gi|331082843|ref|ZP_08331965.1| hypothetical protein HMPREF0992_00889 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542562|gb|EEX23131.1| rhomboid protease GluP [Blautia hansenii DSM 20583]
gi|330400172|gb|EGG79821.1| hypothetical protein HMPREF0992_00889 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 220
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS-FLH 330
E++RL++ MFLH G+ H+ + LL G + ++ G + LIY LGGI N+ S +L
Sbjct: 74 EYYRLISSMFLHFGIQHLGNNMLVLLFLGDCLERNIGKIKYLLIYFLGGIGANVLSIYLE 133
Query: 331 TPEP----TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
+ G +G VFA+IGA + N+ I + ++ A LS L F +++ G
Sbjct: 134 IKNGKYFISAGASGAVFAVIGALIYIVIANRGRIENFTTRQLIVMAGLS--LYFGMTSTG 191
Query: 387 PVDTWAHLGAAFTGII 402
VD AH G +G I
Sbjct: 192 -VDNAAHFGGLISGFI 206
>gi|95928805|ref|ZP_01311551.1| Rhomboid-like protein [Desulfuromonas acetoxidans DSM 684]
gi|95135150|gb|EAT16803.1| Rhomboid-like protein [Desulfuromonas acetoxidans DSM 684]
Length = 266
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 18/218 (8%)
Query: 197 YRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVF--LFEIASPIRNSEFGFF 254
+++++ +GV S + ++ + NL L S+++ +A + + SP N+E
Sbjct: 28 WKQVKRGEGVAS--SNFSISQVLLFVNLVLFSVMILRGMATGGGMSSLLSP--NAE---- 79
Query: 255 SLPLLYGAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFF 313
L ++ G + L++ GEWWR +T + H+GL H+ + L GP + + GP F
Sbjct: 80 -LLVISGGQWWPLVIQNGEWWRCITYAYTHAGLIHIGFNMMVLYQVGPMLEREIGPSGFI 138
Query: 314 LIYTLGGISG-NLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA 372
+YT+ ++ L F H +G +G +F +IG + Y + A + M + A
Sbjct: 139 SLYTITALAATGLGYFWHPMTVVIGASGALFGMIGFSITYFHRIGGHQALAQRDFMIRWA 198
Query: 373 ILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPL 410
I + F++ D AHLG A +G ++G L P+
Sbjct: 199 IFAFIFGFLVG----ADNAAHLGGAVSGAVFG-LVYPI 231
>gi|397602203|gb|EJK58107.1| hypothetical protein THAOC_21791 [Thalassiosira oceanica]
Length = 618
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 17/162 (10%)
Query: 258 LLYGAKINELIL-VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIY 316
L GAK LI+ GEW+RL +PM LH+GL H L+ AL G V + +G +++
Sbjct: 338 LKMGAKQTSLIVNQGEWYRLFSPMVLHAGLIHYLLNMMALWFIGKAVEQCHGFAAAAILF 397
Query: 317 TLGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLI-------AKDVSERM 368
+ + G + S L PE +VG +G +F +IGA + N L+ KD +
Sbjct: 398 IIPAVGGTILSALFLPEYISVGASGGIFGLIGACVADILINWRLLFSKHVNSTKDGTRFR 457
Query: 369 FQKAILSTALSFIIS---NFGP-VDTWAHLGAAFTGIIYGFL 406
K ++ +I+ P VD + HLG G++YGF+
Sbjct: 458 HIKVLMYLLFDIVINCLVGLTPFVDNFTHLG----GMVYGFM 495
>gi|167763036|ref|ZP_02435163.1| hypothetical protein BACSTE_01401 [Bacteroides stercoris ATCC
43183]
gi|167699376|gb|EDS15955.1| peptidase, S54 family [Bacteroides stercoris ATCC 43183]
Length = 771
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 13/154 (8%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA L L G+WWR +T F+H G+ HV ++ +ALL G + + G Y L
Sbjct: 385 WGADFGPLTLTGDWWRTITCNFIHIGVIHVLMNMYALLYIGIFLEQLIGGRRLISAYFLT 444
Query: 320 GISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
G+ L S PE + G +G +F + G +L Y L+ E+ +K++L +
Sbjct: 445 GLFSALASLAMHPETISAGASGSIFGLYGIFLSY------LVFHHRIEKGQRKSLLYSIG 498
Query: 379 SFIISNFGP------VDTWAHLGAAFTGIIYGFL 406
F+ N +D AH+G +GII G +
Sbjct: 499 FFVFYNLMSGARAEGIDNAAHIGGLVSGIILGII 532
>gi|456972143|gb|EMG12595.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 226
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 16/161 (9%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA L G+WWRLVT +F+H+G H+ + + L+ V G F ++Y
Sbjct: 73 WGANRRIETLAGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFS 132
Query: 320 GISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L +
Sbjct: 133 GLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIMIV 185
Query: 379 SFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
+FI++ FG +D AH+G +G + G + L Q G
Sbjct: 186 TFILTGLLWGLFGGIDNAAHIGGLVSGALSGII---LFQFG 223
>gi|449440331|ref|XP_004137938.1| PREDICTED: uncharacterized protein LOC101206123 [Cucumis sativus]
Length = 397
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 263 KINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGIS 322
++N+++ + WRL+T ++LH+G+FH+ + +LL G ++ + +G L+Y + G
Sbjct: 127 EVNKVVHGNQLWRLITCIWLHAGVFHLLANMLSLLVIGIRLEQEFGFIRIGLLYVISGFG 186
Query: 323 GNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 381
G+L S L +VG +G +F ++G L N + + V+ + I+ A++
Sbjct: 187 GSLLSSLFIQSNISVGASGALFGLLGGMLSELITNWTIYSNKVAALVTLLVII--AINLA 244
Query: 382 ISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQE 423
+ VD +AH+G +G + GF+ Q G S R + +
Sbjct: 245 VGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVSQRYTSQ 286
>gi|347525683|ref|YP_004832431.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 27782]
gi|345284642|gb|AEN78495.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 27782]
Length = 219
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 229 ILVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
+L+ I+VA++L A +N S+ + +GA + GE+WRL+T MFLH GL
Sbjct: 13 VLIGINVAIYLLMTFAGGSQNP-----SVLVRFGANFAPYVSNGEYWRLLTAMFLHIGLE 67
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 347
H+AL+ L G + G F ++Y + GI G+ S+ T + G + +F + G
Sbjct: 68 HLALNMLTLYFIGASLEPILGSVRFAVLYLVSGICGDAASYSLTNGLSAGASTALFGLFG 127
Query: 348 AWLIY--QFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 394
A+L+ F+N I K +S + +L+ + F S +D W H+
Sbjct: 128 AYLMLGESFRNNAYI-KMMSRQFLLLVVLNIFIDFFNSG---IDIWGHI 172
>gi|379014757|ref|YP_005290993.1| putative rhomboid family protein, truncated, partial
[Staphylococcus aureus subsp. aureus VC40]
gi|374363454|gb|AEZ37559.1| putative rhomboid family protein, truncated [Staphylococcus aureus
subsp. aureus VC40]
Length = 423
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|389584264|dbj|GAB66997.1| rhomboid protease [Plasmodium cynomolgi strain B]
Length = 621
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 3/158 (1%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
L G N + GE +RL ++LH G H+ + + + +G +++
Sbjct: 307 LGGLNTNYIRNYGEIYRLFWSVYLHGGFMHIIFNVICQIQILWIIEPDWGFIRTLILFFT 366
Query: 319 GGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
G++GNL S + P T+G +G ++ +IGA Y + I + +F ++ T
Sbjct: 367 SGVTGNLLSAVCDPCGVTIGSSGALYGLIGALFTYYIEYWKTIPRPCCVVIFM--LIVTI 424
Query: 378 LSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
I FG D +AH+G GI+YGF T V D
Sbjct: 425 FGIFIGMFGYTDNYAHMGGCLGGILYGFATITTVSAAD 462
>gi|209877288|ref|XP_002140086.1| rhomboid family protein [Cryptosporidium muris RN66]
gi|209555692|gb|EEA05737.1| rhomboid family protein [Cryptosporidium muris RN66]
Length = 892
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 255 SLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFL 314
+L +L G +NEL G RL M++H+G H+ + + G + +G FF
Sbjct: 526 ALNVLGGLVVNEL-RNGGVIRLFWAMWMHAGFIHIGFNVLSQAQLGYMMEPDWGMTRFFF 584
Query: 315 IYTLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
++ L I GNLT + +P TVG +G +F I A L+Y F++ + + +F I
Sbjct: 585 LFFLSAIGGNLTVSVISPCSLTVGSSGGLFGITAAGLVYTFEHWKNLPNPL--FLFVFDI 642
Query: 374 LSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
S + ++S G + WAH+G G++Y T
Sbjct: 643 FSVIIGMVLSFTGVTNPWAHVGGFSVGLLYTLAT 676
>gi|52078997|ref|YP_077788.1| hypothetical protein BL02214 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319648699|ref|ZP_08002910.1| YdcA protein [Bacillus sp. BT1B_CT2]
gi|404487870|ref|YP_006711976.1| transmembrane protein YdcA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423680901|ref|ZP_17655740.1| hypothetical protein MUY_00712 [Bacillus licheniformis WX-02]
gi|52002208|gb|AAU22150.1| conserved membrane protein YdcA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52346871|gb|AAU39505.1| putative transmembrane protein YdcA [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|317389118|gb|EFV69934.1| YdcA protein [Bacillus sp. BT1B_CT2]
gi|383442007|gb|EID49716.1| hypothetical protein MUY_00712 [Bacillus licheniformis WX-02]
Length = 199
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWR VTP+F+H+G H+ + ++ F P + + G F ++Y G+ GN+ ++
Sbjct: 56 GEWWRFVTPIFIHAGFGHLLFNSMSIFLFAPGLERMLGKLKFLIVYIGAGVIGNIGTYFI 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L K+L+ S+ + +S ++F+ N +
Sbjct: 116 EPLEYMHVGASGAIFGLFGVYLYIVLFRKELMGSANSQIIVTILAISVLMTFVNQN---I 172
Query: 389 DTWAHLGAAFTGI 401
+ AH+ G+
Sbjct: 173 NMMAHIFGLLGGL 185
>gi|85102797|ref|XP_961391.1| hypothetical protein NCU01305 [Neurospora crassa OR74A]
gi|16944591|emb|CAC18292.2| related to membrane protein [Neurospora crassa]
gi|28922936|gb|EAA32155.1| predicted protein [Neurospora crassa OR74A]
Length = 548
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 15/174 (8%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT--SFL 329
+WWR +TPMFLH+G+ H+ + +T G ++ +S G FF++Y GI G + +F
Sbjct: 280 QWWRFITPMFLHAGVIHIGFNMLLQMTIGKEMERSIGSIRFFIVYVSAGIFGFVMGGNFA 339
Query: 330 HTPEPTVGGTGPVFAIIG---AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
T G +G +F II L+Y ++++ KD+ +F L +SF++
Sbjct: 340 ANGMQTTGASGALFGIIALLLLDLLYSWRDRKSPWKDL---LFIG--LDIVISFVLGLLP 394
Query: 387 PVDTWAHLGAAFTGIIYGF--LTCPLV---QLGDASSRNSQEEGITLIRQYANP 435
+D +AH+G G+ G L P ++GD + + +RQ A P
Sbjct: 395 GLDNFAHIGGFLAGLALGICVLQSPNALRRRIGDEPPYSQVVDTNGFLRQGAPP 448
>gi|167526511|ref|XP_001747589.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774035|gb|EDQ87669.1| predicted protein [Monosiga brevicollis MX1]
Length = 883
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+WWR +TP+F H+ + H L A +G ++ G LIY + GI G + + +
Sbjct: 684 QWWRFITPLFFHASVAHAILVLIAQYYYGRKMETHIGAMRSLLIYFISGIGGTCIAAVFS 743
Query: 332 PEPTVGGTGP-VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P GT P V+ I+ L+ FQ+ L+ + +++ L ++ VD
Sbjct: 744 PLDVSVGTNPSVYGILAVHLVDLFQSWQLVDRPGLSLAGLGGVIAVLL--LVGTTSYVDN 801
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLG 414
W+H+G G++ G + P + G
Sbjct: 802 WSHIGGFAFGLVSGIIFIPYITFG 825
>gi|408397516|gb|EKJ76658.1| hypothetical protein FPSE_03208 [Fusarium pseudograminearum CS3096]
Length = 570
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+ IN+ +W+R +T +F+H+G+ H+ + LT ++ + GP F L+Y
Sbjct: 319 FNGDINQSPEPNQWYRFITSIFMHAGIIHIVFNLLLQLTIAKEMEMAIGPVRFLLVYMSA 378
Query: 320 GISGNLTSFLHTP--EPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVSERMFQKAIL 374
GI GN+ + P +P+VG +G +F II L+Y ++++ KD+ +F +L
Sbjct: 379 GIFGNIMGGNYAPPGQPSVGASGALFGIIALVLLDLLYSWKDRRSPVKDL---LF--IVL 433
Query: 375 STALSFIISNFGPVDTWAHLGAAFTGIIYG 404
++F++ +D + H+G G+ G
Sbjct: 434 DMVIAFVLGLLPGLDNFVHIGGFLMGLSLG 463
>gi|328542277|ref|YP_004302386.1| rhomboid family protein [Polymorphum gilvum SL003B-26A1]
gi|326412026|gb|ADZ69089.1| Rhomboid family protein [Polymorphum gilvum SL003B-26A1]
Length = 250
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVG--EWWRLVTPMFLH 283
++ ++ ++V FL++ + P R + F L+ +L LV +W +T +FLH
Sbjct: 16 MVWAVIGVNVLAFLYQTSLPPRVLDRFLFEFALVPSRFFGQLSLVAPSDWTPFLTNIFLH 75
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE---PTVGGTG 340
G H+ L+ W L FGP V GP F L Y G++ L L P+ P +G +G
Sbjct: 76 GGWLHLILNMWTLWIFGPAVEDRLGPGRFTLFYLFCGVAAGLAHALANPDSVVPALGASG 135
Query: 341 PVFAIIGAWL-IYQFQNKDLIAKDVSERMF--QKAILSTALSF---IISNF--------- 385
+ +IG + ++ +I + +F +A++ + F +I F
Sbjct: 136 AIAGVIGCYARMFPAARLVVIVPILFIPLFFEVRAVIFAMIWFFMQVIPGFLSLGSDQAT 195
Query: 386 GPVDTWAHLGAAFTGIIYGFLTCPLV-QLGDASSRNSQEEGI 426
G + WAH+G G + G+L PL+ + DA ++EGI
Sbjct: 196 GGIAWWAHIG----GFLAGWLVTPLLRRRADAYRHYYRDEGI 233
>gi|353234818|emb|CCA66839.1| related to membrane protein [Piriformospora indica DSM 11827]
Length = 577
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 12/146 (8%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFL 329
+W+R +TP+FLH+G+ H L+ +A QV + G FF++Y G+ GN+ +F
Sbjct: 368 QWFRFITPIFLHAGIIHFLLNMFAQWVLSGQVEREMGSIGFFILYFACGVFGNILGGNFA 427
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAK-DVSERMFQK---AILSTALSFIISNF 385
+P+VG +G AI+G + DLIA + + QK I++ L +
Sbjct: 428 LVGQPSVGASG---AIVGTLAVLWV---DLIAHWGIEYKPVQKLIGHIINLVLVVGMGYI 481
Query: 386 GPVDTWAHLGAAFTGIIYGFLTCPLV 411
VD ++HLG G+I G + P++
Sbjct: 482 PGVDNFSHLGGLLMGLITGIILLPII 507
>gi|441213690|ref|ZP_20975936.1| peptidase, S54 family [Mycobacterium smegmatis MKD8]
gi|440625654|gb|ELQ87500.1| peptidase, S54 family [Mycobacterium smegmatis MKD8]
Length = 250
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 19/175 (10%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++++V +F+ E+A+ E + + E++RLVT MFLH G H+
Sbjct: 43 LIAVNVLMFVLELAAGALKRELAL---------QPASIAAYDEYYRLVTSMFLHYGAMHL 93
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGPVFAIIG 347
+ WAL GP + + G F ++Y L G+ G++ ++ +P T G +G +F + G
Sbjct: 94 LFNMWALYVVGPPLEQWLGRLRFGVLYALSGLGGSVLVYMLSPLNSATAGASGAIFGLFG 153
Query: 348 A-WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW-AHLGAAFTG 400
A +++ + N D+ A V +++ +F+ G +W H+G TG
Sbjct: 154 AIFVVARHLNLDVRAIGV------IVVINLVFTFVGPALGTAISWQGHIGGLVTG 202
>gi|440793889|gb|ELR15060.1| peptidase, S54 family protein [Acanthamoeba castellanii str. Neff]
Length = 434
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 100/224 (44%), Gaps = 30/224 (13%)
Query: 211 RDLALQRTEETSN-------LYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAK 263
R + QRT + SN L L SI + + V ++ +N F S+ +G
Sbjct: 162 RVVEQQRTIQESNHKHFPFFLLLASIAQCVLMGVAIW------KNGGFEPISVNPFFGPD 215
Query: 264 INELILVG-----------EWWRLVTPMFLHSGLFHVALS-CWALLTFGPQVCKSYGPFT 311
LI +G E WR TP+FLH+GL H+AL+ + L F + + G
Sbjct: 216 AETLIALGAKDVPKIVEDYEVWRFFTPIFLHAGLIHLALNLIFQLQCF--MLERQMGFVR 273
Query: 312 FFLIYTLGGISGNLTSFLHTPE-PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ 370
L+Y + G GNL S L P +VG +G +F ++G + F+N L+ R
Sbjct: 274 VGLVYIVSGFGGNLASSLFLPRLISVGASGALFGLVGMIFVVIFRNWSLVVSPC--RNLV 331
Query: 371 KAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
+ A+S + VD +AH+G TG++ + P ++ G
Sbjct: 332 VLCIMVAISLFLGLLPNVDNFAHVGGLVTGLVASLIVVPSLKHG 375
>gi|154249662|ref|YP_001410487.1| rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
gi|154153598|gb|ABS60830.1| Rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
Length = 224
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Query: 219 EETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVT 278
E + YL ILV+ + + + + S+ + LL+GA+ LI G+W+R++T
Sbjct: 3 ERKNPAYLYLILVNSLILLIFYVFKTFFIKSDLAY----LLFGAQYGPLIKSGQWYRIIT 58
Query: 279 PMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTPEPTVG 337
MF+H G H+A + +AL G YG + F Y + GI GN+ T + +VG
Sbjct: 59 AMFMHGGFLHLAFNMYALYIIGNYAEGIYGTYRFITYYFITGIVGNVATHIFYYGSLSVG 118
Query: 338 GTGPVFAIIGA 348
+G +F ++G
Sbjct: 119 ASGAIFGLVGV 129
>gi|389574281|ref|ZP_10164346.1| conserved membrane protein YdcA [Bacillus sp. M 2-6]
gi|388426043|gb|EIL83863.1| conserved membrane protein YdcA [Bacillus sp. M 2-6]
Length = 201
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL+TP+FLH L H+ + +L F P + G F +IY G GNL ++
Sbjct: 56 GEWWRLLTPIFLHGSLTHILFNSMSLFLFAPALEYLLGKVRFLVIYLGAGFIGNLGTYWV 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L ++ + S+ + +S ++F+ SN +
Sbjct: 116 EPLEYVHVGASGAIFGLFGVYLYLVLFKPHMMDRGNSQVILTILGVSVIMTFVNSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFLTCPLVQLGDASSR 419
+ AHL G+I G + P+ + R
Sbjct: 173 NIMAHL----FGLIGGMILAPITLFFHSKKR 199
>gi|297743435|emb|CBI36302.3| unnamed protein product [Vitis vinifera]
Length = 289
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GE WRLV+ ++LH+G H+ + +LL G ++ + +G L+Y + G G+L S LH
Sbjct: 109 GEEWRLVSCIWLHAGAIHLIANMLSLLFIGVKLEQEFGFLRIGLLYVISGFGGSLLSALH 168
Query: 331 TPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
+ +VG +G +F ++GA L F N + A + M + L+ + VD
Sbjct: 169 LQKSISVGASGALFGLLGAMLSELFMNWTIYANKCAALM--TLMFVVVLNLAVGFLPHVD 226
Query: 390 TWAHLGAAFTGIIYGFLTCPLVQLGDASSR 419
+ AH+G +G + GF+ Q G S +
Sbjct: 227 SSAHIGGFLSGFLLGFILLVRPQYGYVSRK 256
>gi|221057219|ref|XP_002259747.1| rhomboid protease [Plasmodium knowlesi strain H]
gi|193809819|emb|CAQ40523.1| rhomboid protease, putative [Plasmodium knowlesi strain H]
Length = 664
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
L G N + GE +RL ++LH G H+ + + + +G L++ +
Sbjct: 350 LGGLNTNYIRNYGEIYRLFWSVYLHGGFMHIIFNVLCQIQILWMIEPDWGFLRTLLLFFI 409
Query: 319 GGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
G++GNL S + P T+G +G ++ +IGA Y + I + S +F ++
Sbjct: 410 SGVTGNLLSAVCDPCGVTIGSSGSLYGLIGALFTYHIEYWKTIPRPCSVLIFMVIVIIFG 469
Query: 378 LSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
+ + FG D +AH+G GI+YGF T V D
Sbjct: 470 IFIGM--FGYTDNYAHMGGCLGGILYGFATITTVSAAD 505
>gi|429852564|gb|ELA27696.1| rhomboid family membrane protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 606
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFL 329
+W+R +TP+FLH+GL H+ + +T G ++ + G FFL+Y GI GN+ ++
Sbjct: 365 QWFRFITPIFLHAGLIHIGFNLLLQMTIGKEMEIAIGSIRFFLVYVSAGIFGNVMGANYA 424
Query: 330 HTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
+ G +G +F +I L+Y ++++ KD+ MF +L +SF++
Sbjct: 425 GVMTASTGASGALFGVIALTLLDLLYSWKDRRSPVKDL---MF--IMLDIVISFVLGLLP 479
Query: 387 PVDTWAHLGAAFTGIIYG 404
+D +AH+G G+ G
Sbjct: 480 GLDNFAHIGGFLMGLALG 497
>gi|393248033|gb|EJD55540.1| rhomboid-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 325
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 11/145 (7%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLH 330
+W+R +TP+FLH+G+ H+ L+ +A Q+ + G F L+Y GI G L +F
Sbjct: 126 QWFRFITPIFLHAGIIHILLNMFAQFMLAAQIEREMGSGGFVLLYFAAGIFGCLGANFAL 185
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIS---NFGP 387
P+VG +G +F I + DL A E+ +K ++ + +I + P
Sbjct: 186 IGSPSVGASGAIFGTIAVLWV------DLFAHWQFEQQPKKKLVFLLIDLLIGIGLGYIP 239
Query: 388 -VDTWAHLGAAFTGIIYGFLTCPLV 411
VD +AHLG F G+++ + P++
Sbjct: 240 GVDNFAHLGGFFMGLLFAIIFLPVI 264
>gi|317500904|ref|ZP_07959115.1| rhomboid protease GluP [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089196|ref|ZP_08338098.1| hypothetical protein HMPREF1025_01681 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336439355|ref|ZP_08618969.1| hypothetical protein HMPREF0990_01363 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316897702|gb|EFV19762.1| rhomboid protease GluP [Lachnospiraceae bacterium 8_1_57FAA]
gi|330405748|gb|EGG85277.1| hypothetical protein HMPREF1025_01681 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336016163|gb|EGN45955.1| hypothetical protein HMPREF0990_01363 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 200
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 13/182 (7%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVG-EWWRLVTPMFLHSGL 286
++L+ I+VAVFL I S + ++E F L +GA I G E++R+ T MFLH G+
Sbjct: 11 TVLIVINVAVFL--ILSMLGDTEDAAFMLQ--HGAMYEPFITEGQEYYRIFTCMFLHFGI 66
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-----TVGGTGP 341
H+ + L G + G F +IY L GI GN+ S + + G +G
Sbjct: 67 THLMNNMVMLGALGWNLELEIGKLRFIIIYFLSGIGGNILSLIAAISAGESAVSAGASGA 126
Query: 342 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGI 401
VF ++GA L N+ + + M +LS L F +++ G VD AH+G G
Sbjct: 127 VFGLMGALLYVVIANRGRLGQLSGRGMIFMVVLS--LYFGLTSSG-VDNMAHIGGLICGF 183
Query: 402 IY 403
I+
Sbjct: 184 IF 185
>gi|449302177|gb|EMC98186.1| hypothetical protein BAUCODRAFT_121073 [Baudoinia compniacensis
UAMH 10762]
Length = 520
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 13/180 (7%)
Query: 252 GFFSLPLLY-GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPF 310
GF +P + G IN+ +WWR + P+FLH+G+ H+A + LT G V K G
Sbjct: 226 GFSGVPNPHVGGSINDKPAPNQWWRFIVPIFLHAGIIHIAFNLLLQLTLGADVEKLIGSI 285
Query: 311 TFFLIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVS 365
F ++Y GI G + +F + G +G +F I+ L+Y + ++ KD+
Sbjct: 286 RFTIVYFAAGIFGFVLGGNFAANGIASCGCSGSLFGILAITLLDLLYTWHQREGPIKDL- 344
Query: 366 ERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEG 425
+F ++ ++F++ +D ++H+G G++ G C L S R SQ+ G
Sbjct: 345 --LF--ILIDVIIAFVLGLLPGLDNFSHIGGFLMGLVLG--VCILRSPTTFSRRTSQDVG 398
>gi|228983495|ref|ZP_04143705.1| Rhomboid [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228776239|gb|EEM24595.1| Rhomboid [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 190
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 20/165 (12%)
Query: 253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
FF P+ A NE I GEWWRL+T + +H L H + L G + K G F+F
Sbjct: 30 FFLFPM---AASNEYIAKGEWWRLITSLLVHVDLQHFLSNSICLFMLGSSIEKQLGHFSF 86
Query: 313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGA--WLIY-QFQNKDLIAKDVSER 367
+I+ L GI GN++S+L P + G +G +F ++GA +L+Y ++++ + +D++
Sbjct: 87 IIIFFLSGILGNISSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSN--PRDIAIF 144
Query: 368 MFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
IL + + F P + +HL TG+I G + PL+
Sbjct: 145 SIMICIL-----LLFTFFNPSANPISHL----TGLIIGGICTPLL 180
>gi|118467848|ref|YP_889287.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399989299|ref|YP_006569649.1| membrane protein in rhomboid family [Mycobacterium smegmatis str.
MC2 155]
gi|118169135|gb|ABK70031.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399233861|gb|AFP41354.1| Conserved membrane protein in rhomboid family [Mycobacterium
smegmatis str. MC2 155]
Length = 250
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 23/203 (11%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++++V +F+ +IA S + L L E++RLVT MFLH G H+
Sbjct: 43 LIAVNVLMFVLQIAGGDLESRLTLWP---------PALALHDEYYRLVTSMFLHYGAMHL 93
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGPVFAIIG 347
+ WAL GP + K G F ++Y L G+ G++ ++ +P T G +G +F + G
Sbjct: 94 LFNMWALYVVGPPLEKWLGLTRFGVLYALSGLGGSVLVYMLSPLNSATAGASGAIFGLFG 153
Query: 348 A-WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW-AHLGAAFTGIIYGF 405
A +++ + N D+ A V +++ +F+ G +W H+G G++ G
Sbjct: 154 AIFVVARHLNLDVRAIGV------IVVINLVFTFVGPALGTAISWQGHIG----GLVTGA 203
Query: 406 LTCPLVQLGDASSRNSQEEGITL 428
L R + G+T+
Sbjct: 204 LVASAFVYAPRERRTATAAGVTV 226
>gi|293376243|ref|ZP_06622486.1| peptidase, S54 (rhomboid) family protein [Turicibacter sanguinis
PC909]
gi|292645135|gb|EFF63202.1| peptidase, S54 (rhomboid) family protein [Turicibacter sanguinis
PC909]
Length = 423
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 10/220 (4%)
Query: 162 DAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEET 221
D + + D T ++ SI ++S M +L + +K ++ + L Q
Sbjct: 116 DIQRADDFTQNEDIKQFYSSIERASLERSMSELIIEMQQTSKAKALNVRKMLEFQ----- 170
Query: 222 SNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMF 281
S ++I +++ V +FL P++N + +GAK N LI+ GE+WRL+TP
Sbjct: 171 SKSFVIIGFLALLVILFLMIQIQPVKN-----IGTAIEFGAKYNPLIIAGEYWRLLTPSL 225
Query: 282 LHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGP 341
+H LFH+ + + FG + +G + +I GNL SF ++G +
Sbjct: 226 IHLQLFHLLFNAIFIYQFGKIIEHLFGWWRLTIIIIGSAFLGNLFSFAFIENVSLGASTV 285
Query: 342 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 381
+ ++GA L +N+ + V +F + S + I
Sbjct: 286 AYGLLGAMLFLGIENRKMFMHLVKGMIFPIMLFSIVWAII 325
>gi|297171861|gb|ADI22850.1| uncharacterized membrane protein (homolog of Drosophila rhomboid)
[uncultured nuHF2 cluster bacterium HF0500_31B05]
Length = 232
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 254 FSLPLLYGAKINELIL-VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
F L++G L+ G WW L+T ++LH GL H+ + + GP V + +GPF
Sbjct: 47 FQASLMFGMTGGGLVYQYGHWWTLITAIYLHGGLLHIFFNMMWVRQLGPLVEELFGPFRL 106
Query: 313 FLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA 372
F I+T+ GI+G S T+G +G +F ++ ++Y + +F +
Sbjct: 107 FTIFTVAGIAGFWLSATMGHNATLGASGSIFGLLATAIVY--------GRRSGSSLFTRQ 158
Query: 373 ILSTA-LSFIISNFGP-VDTWAHLGA 396
L A + F+ P +D WAHLG
Sbjct: 159 FLQWAGILFVFGLVFPGIDNWAHLGG 184
>gi|421836033|ref|ZP_16270628.1| peptidase, S54, partial [Clostridium botulinum CFSAN001627]
gi|409742181|gb|EKN41685.1| peptidase, S54, partial [Clostridium botulinum CFSAN001627]
Length = 266
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK+N I GE++RL+T MFLH GL H+AL+ +AL GP V +G + +IY + G
Sbjct: 190 GAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGKVKYLIIYFISG 249
Query: 321 I 321
I
Sbjct: 250 I 250
>gi|326504866|dbj|BAK06724.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 418
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 91/189 (48%), Gaps = 8/189 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH- 330
EWWRL+T ++LH+G+ H+ + +LL G ++ K +G +Y + G+ G+L S L
Sbjct: 156 EWWRLITCIWLHAGVIHILANMLSLLMIGIRLEKEFGFLRIGTLYVISGVGGSLLSALFM 215
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
+VG +G +F ++G+ L N + + + ++ ++ + VD
Sbjct: 216 VSNISVGASGALFGLLGSMLSELITNWTIYENKCAALL--TLVMIIVINLAVGILPHVDN 273
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ---EEGITLIRQYANPCKSLIVFTIFVI 447
+AH+G +G GF+ Q G + +NS+ G T + P + +++ VI
Sbjct: 274 FAHIGGFVSGFFLGFVLLMRPQFGYINQKNSRLGVHSGTTKCKY--KPYQIVLLVIALVI 331
Query: 448 ILGSFIFVF 456
++ FI F
Sbjct: 332 LICGFITGF 340
>gi|167634174|ref|ZP_02392496.1| rhomboid family protein [Bacillus anthracis str. A0442]
gi|170687776|ref|ZP_02878991.1| rhomboid family protein [Bacillus anthracis str. A0465]
gi|254686591|ref|ZP_05150450.1| rhomboid family protein [Bacillus anthracis str. CNEVA-9066]
gi|254723569|ref|ZP_05185356.1| rhomboid family protein [Bacillus anthracis str. A1055]
gi|254739716|ref|ZP_05197409.1| rhomboid family protein [Bacillus anthracis str. Kruger B]
gi|421641042|ref|ZP_16081606.1| rhomboid family protein [Bacillus anthracis str. BF1]
gi|167530488|gb|EDR93203.1| rhomboid family protein [Bacillus anthracis str. A0442]
gi|170668303|gb|EDT19051.1| rhomboid family protein [Bacillus anthracis str. A0465]
gi|403391827|gb|EJY89099.1| rhomboid family protein [Bacillus anthracis str. BF1]
Length = 190
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 20/165 (12%)
Query: 253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
FF P+ A +E I GEWWRL+T +F+H L H + L G + K G F+F
Sbjct: 30 FFLFPM---AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSF 86
Query: 313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGA--WLIY-QFQNKDLIAKDVSER 367
+I+ L GI GN+ S+L P + G +G +F ++GA +L+Y ++++ + KD++
Sbjct: 87 IIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSN--PKDIAIF 144
Query: 368 MFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
IL + + F P + +HL TG+I G + PL+
Sbjct: 145 SIMICIL-----LLFTFFNPSANPISHL----TGLIIGGICTPLL 180
>gi|352518163|ref|YP_004887480.1| rhomboid family protein [Tetragenococcus halophilus NBRC 12172]
gi|348602270|dbj|BAK95316.1| rhomboid family protein [Tetragenococcus halophilus NBRC 12172]
Length = 228
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LH 330
++WR +TP+F+H GL H A++ L G ++ YG +F IY L G +GNL SF +
Sbjct: 53 QYWRFITPIFIHYGLMHFAVNSIVLYFMGQRLEAMYGHMRYFFIYLLSGAAGNLLSFAFN 112
Query: 331 TPE-PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG-PV 388
+P + G + +F + GA+++ K+ A V R F L +S + S F +
Sbjct: 113 SPGVQSAGSSTALFGLFGAFVVLGVHYKNNYAIQVLVRQFT---LFIGISLLFSLFDRSI 169
Query: 389 DTWAHL 394
D W H+
Sbjct: 170 DIWGHI 175
>gi|418324201|ref|ZP_12935451.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
gi|365227449|gb|EHM68645.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
Length = 479
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++I+V ++L R S+F + G ++ + GEW+RL+T MFLH H+
Sbjct: 162 LIAINVFIWLIMFLVLDRFSDFKLLDV----GGLVHFNFVHGEWYRLITSMFLHFNFEHL 217
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY G+ GN S +T + G +G +F +IGA
Sbjct: 218 LMNMLSLFIFGKIVESIVGHWRMLVIYLFAGLFGNFASLSFNTHTVSAGASGAIFGLIGA 277
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
+ + +K K + + + IL +S I N V
Sbjct: 278 IFTFMYLSKTFNRKLIGQLLIVLVIL-IGISIFIPNINIV 316
>gi|49476749|ref|YP_034576.1| rhomboid-like protein [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|118475997|ref|YP_893148.1| rhomboid family protein [Bacillus thuringiensis str. Al Hakam]
gi|196036042|ref|ZP_03103443.1| rhomboid family protein [Bacillus cereus W]
gi|196041125|ref|ZP_03108421.1| rhomboid family protein [Bacillus cereus NVH0597-99]
gi|196046176|ref|ZP_03113403.1| rhomboid family protein [Bacillus cereus 03BB108]
gi|218901442|ref|YP_002449276.1| rhomboid family protein [Bacillus cereus AH820]
gi|225862291|ref|YP_002747669.1| rhomboid family protein [Bacillus cereus 03BB102]
gi|376264269|ref|YP_005116981.1| rhomboid family protein [Bacillus cereus F837/76]
gi|49328305|gb|AAT58951.1| conserved hypothetical protein, probable rhomboid-like protein
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118415222|gb|ABK83641.1| rhomboid family protein [Bacillus thuringiensis str. Al Hakam]
gi|195991411|gb|EDX55378.1| rhomboid family protein [Bacillus cereus W]
gi|196022921|gb|EDX61601.1| rhomboid family protein [Bacillus cereus 03BB108]
gi|196028060|gb|EDX66671.1| rhomboid family protein [Bacillus cereus NVH0597-99]
gi|218538397|gb|ACK90795.1| rhomboid family protein [Bacillus cereus AH820]
gi|225790775|gb|ACO30992.1| rhomboid family protein [Bacillus cereus 03BB102]
gi|364510069|gb|AEW53468.1| Rhomboid family protein [Bacillus cereus F837/76]
Length = 190
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 20/165 (12%)
Query: 253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
FF P+ A +E I GEWWRL+T +F+H L H + L G + K G F+F
Sbjct: 30 FFLFPM---AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSF 86
Query: 313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGA--WLIY-QFQNKDLIAKDVSER 367
+I+ L GI GN+ S+L P + G +G +F ++GA +L+Y ++++ + KD++
Sbjct: 87 IIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSN--PKDIAIF 144
Query: 368 MFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
IL + + F P + +HL TG+I G + PL+
Sbjct: 145 SIMICIL-----LLFTFFNPSANPISHL----TGLIIGGICTPLL 180
>gi|52144990|ref|YP_081838.1| rhomboid-like protein [Bacillus cereus E33L]
gi|51978459|gb|AAU20009.1| conserved hypothetical protein; probable rhomboid-like protein
[Bacillus cereus E33L]
Length = 190
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 16/163 (9%)
Query: 253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
FF P+ A +E I GEWWRL+T +F+H L H + L G + K G F+F
Sbjct: 30 FFLFPM---AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGHFSF 86
Query: 313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQF-QNKDLIAKDVSERMF 369
+I+ L GI GN+ S+L P + G +G +F ++GA L + + + KD++
Sbjct: 87 IIIFFLSGILGNIFSYLIMPHEYIHSGASGGIFGLLGAQLFLMYSRYRSSNPKDIAIFSV 146
Query: 370 QKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
IL + + F P + +HL TG+I G + PL+
Sbjct: 147 MICIL-----LLFTFFNPSANPISHL----TGLIIGGICTPLL 180
>gi|423553832|ref|ZP_17530159.1| hypothetical protein IGW_04463 [Bacillus cereus ISP3191]
gi|401182652|gb|EJQ89784.1| hypothetical protein IGW_04463 [Bacillus cereus ISP3191]
Length = 190
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 20/165 (12%)
Query: 253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
FF P+ A +E I GEWWRL+T +F+H L H + L G + K G F+F
Sbjct: 30 FFLFPM---AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSF 86
Query: 313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGA--WLIY-QFQNKDLIAKDVSER 367
+I+ L GI GN+ S+L P + G +G +F ++GA +L+Y ++++ + KD++
Sbjct: 87 IIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSN--PKDIAIF 144
Query: 368 MFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
IL + + F P + +HL TG+I G + PL+
Sbjct: 145 SIMICIL-----LLFTFFNPSANPISHL----TGLIIGGICTPLL 180
>gi|302911024|ref|XP_003050402.1| hypothetical protein NECHADRAFT_63508 [Nectria haematococca mpVI
77-13-4]
gi|256731339|gb|EEU44689.1| hypothetical protein NECHADRAFT_63508 [Nectria haematococca mpVI
77-13-4]
Length = 569
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+ I++ +W+R +T +FLH+G+ H+ + LT G + ++ GP F L+Y
Sbjct: 320 FNGDIDQSPQPNQWFRFITSIFLHAGVVHILFNLLVQLTIGKDMERAIGPVRFLLVYISA 379
Query: 320 GISGNLTSFLHTPE--PTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVSERMFQKAIL 374
GI GN+ + P ++G +G +F II L+Y ++++ KD+ +F L
Sbjct: 380 GIFGNIMGGNYAPPGYASMGASGAIFGIIALTLLDLLYSWKDRKSPVKDL---LF--IFL 434
Query: 375 STALSFIISNFGPVDTWAHLGAAFTGIIYG 404
A++F++ +D +AH+G G+ G
Sbjct: 435 DMAIAFVLGLLPGLDNFAHIGGFLMGLSLG 464
>gi|423596872|ref|ZP_17572897.1| hypothetical protein IIG_05734 [Bacillus cereus VD048]
gi|423602237|ref|ZP_17578237.1| hypothetical protein III_05039 [Bacillus cereus VD078]
gi|423672513|ref|ZP_17647452.1| hypothetical protein IKS_00056 [Bacillus cereus VDM062]
gi|401218537|gb|EJR25214.1| hypothetical protein IIG_05734 [Bacillus cereus VD048]
gi|401226138|gb|EJR32679.1| hypothetical protein III_05039 [Bacillus cereus VD078]
gi|401311619|gb|EJS16905.1| hypothetical protein IKS_00056 [Bacillus cereus VDM062]
Length = 190
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 249 SEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYG 308
S+F F L A NE I GEWWR++T + +H L H + L FG + K G
Sbjct: 28 SDFSLFHL-----AAYNEYIAKGEWWRVITSLLVHVDLQHFLSNSICLFVFGSSIEKQLG 82
Query: 309 PFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
F+F +I+ L GI GN++S++ P + G +G +F ++GA L
Sbjct: 83 HFSFIIIFFLSGILGNISSYIIMPLEYIHAGASGGIFGLLGAQL 126
>gi|182414011|ref|YP_001819077.1| rhomboid family protein [Opitutus terrae PB90-1]
gi|177841225|gb|ACB75477.1| Rhomboid family protein [Opitutus terrae PB90-1]
Length = 489
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS-FL 329
GEWWR+VT MF+H GL H+AL+ WAL G V + +G F L Y GI + S +
Sbjct: 186 GEWWRIVTSMFVHYGLLHLALNMWALFQTGHFVERLFGRPLFALGYLGSGIVASFASIYW 245
Query: 330 HTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP- 387
H + + G +G VF + G L + + + I V +F+ ++ + + P
Sbjct: 246 HGDQIWSAGASGAVFGVYGLLLGFMVRERQSIPPPVLRPLFKSTLMFAGYNLVFGFVYPR 305
Query: 388 VDTWAH 393
+D AH
Sbjct: 306 IDNAAH 311
>gi|227530504|ref|ZP_03960553.1| S54 family peptidase [Lactobacillus vaginalis ATCC 49540]
gi|227349609|gb|EEJ39900.1| S54 family peptidase [Lactobacillus vaginalis ATCC 49540]
Length = 220
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 11/161 (6%)
Query: 254 FSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFF 313
FS+ + GA++ LI G+WWRL+TP+FLH G+ H+ ++ L G + + + +
Sbjct: 35 FSVLIECGARVTSLIHEGQWWRLITPVFLHIGIAHLIINSITLYFLGMYIEELFSHWRML 94
Query: 314 LIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIY--QFQNKDLIAKDVSERMFQ 370
+IY + +GNL S P + G + +F + GA+L+ F + +LI +D+S +
Sbjct: 95 VIYLVSAFTGNLASAYFLPNTISAGASTALFGLFGAFLMLGESFHDNELI-QDLSRQFLI 153
Query: 371 KAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
++ + F + VD H+G G++ GFL +V
Sbjct: 154 LVGINIVMDFFLPG---VDLAGHIG----GLLGGFLISYVV 187
>gi|47567486|ref|ZP_00238198.1| glp regulon protein (glpG) isolog [Bacillus cereus G9241]
gi|47555888|gb|EAL14227.1| glp regulon protein (glpG) isolog [Bacillus cereus G9241]
Length = 190
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 20/165 (12%)
Query: 253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
FF P+ A NE I GEWWRL+T + +H L H + L G + K G F+F
Sbjct: 30 FFLFPM---AASNEYIAKGEWWRLMTSLLVHVDLQHFLSNSICLFVLGSSIEKQLGHFSF 86
Query: 313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGA--WLIY-QFQNKDLIAKDVSER 367
+I+ L GI GN++S+L P + G +G +F ++GA +L+Y ++++ + +D++
Sbjct: 87 LIIFFLSGILGNISSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSN--PRDIAIF 144
Query: 368 MFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
IL + + F P + +HL TG+I G + PL+
Sbjct: 145 SIMICIL-----LLFTFFNPSANPISHL----TGLIIGGICTPLL 180
>gi|217077443|ref|YP_002335161.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
gi|217037298|gb|ACJ75820.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
Length = 223
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 18/164 (10%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
L L++GA+ L+ G+W+R+VT MF+H G H+ + +AL G V YG F
Sbjct: 33 LYLMFGAQYGPLVSHGQWFRIVTSMFVHGGFIHLIFNMYALFFLGRIVENVYGTEKFLTF 92
Query: 316 YTLGGISGNL-TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL 374
Y L GI GNL T + +VG +G +F +IG F+ KD + K I
Sbjct: 93 YFLSGIVGNLATQIFYYNSFSVGASGAIFGLIGVLFAAGFR------KDTPYSL--KPIT 144
Query: 375 STA-LSFIISN--FG-----PVDTWAHLGAAFTGIIYGFLTCPL 410
+A L I+ N FG ++ AH+G TG++ G++ PL
Sbjct: 145 GSALLPMIVINIIFGIMPGTNINNAAHIGGFLTGMLLGYM-IPL 187
>gi|451997902|gb|EMD90367.1| hypothetical protein COCHEDRAFT_1179059 [Cochliobolus
heterostrophus C5]
Length = 535
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+WWR +TPMFLH+G+ H+ + T G + K GP F L+Y GI G + +
Sbjct: 273 QWWRFITPMFLHAGVIHIGFNMLLQWTLGRDMEKEIGPLRFALVYFSAGIFGFVLGGNYA 332
Query: 332 PE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
P+ +VG +G +F I+ L+ N V + +F +L A++F+I +D
Sbjct: 333 PDGITSVGCSGSLFGILALTLLDLLYNWSTRRSPVKDLIF--ILLDMAIAFVIGLLPGLD 390
Query: 390 TWAHLGAAFTGIIYG 404
++H+G G++ G
Sbjct: 391 NFSHIGGFLMGLVLG 405
>gi|423421597|ref|ZP_17398686.1| hypothetical protein IE3_05069 [Bacillus cereus BAG3X2-1]
gi|401097259|gb|EJQ05287.1| hypothetical protein IE3_05069 [Bacillus cereus BAG3X2-1]
Length = 190
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L + A NE I GEWWR++T +F+H L H + L G + K G F+F +I+
Sbjct: 32 LFHMAAYNEYIAKGEWWRVITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFF 91
Query: 318 LGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
L GI GN++S++ P + G +G +F ++GA L
Sbjct: 92 LSGIIGNISSYIIMPLDYIHAGASGGIFGLLGAQL 126
>gi|257869580|ref|ZP_05649233.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|357050773|ref|ZP_09111970.1| hypothetical protein HMPREF9478_01953 [Enterococcus saccharolyticus
30_1]
gi|257803744|gb|EEV32566.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|355380925|gb|EHG28057.1| hypothetical protein HMPREF9478_01953 [Enterococcus saccharolyticus
30_1]
Length = 226
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
++I VF+ SP+ + +++G + + E+WR VTP+F+H GL H
Sbjct: 18 FLAIQTLVFIIGYISPMTQV------MGVMFGPYVAYM---NEYWRFVTPIFIHFGLAHF 68
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE--PTVGGTGPVFAIIG 347
A++ L G QV YG FF++Y + G+ GN SF + G + +F + G
Sbjct: 69 AVNSVILYFMGQQVEAIYGHARFFILYLMSGVMGNAMSFAFNQAGVQSAGASTSLFGLFG 128
Query: 348 AWLI--YQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG-PVDTWAHL 394
A+LI F+N I + M ++ L L+F+ F +D W H+
Sbjct: 129 AFLILGLHFKNDYQI-----QAMVRQFALFVVLNFVFGLFDQSIDIWGHV 173
>gi|224090695|ref|XP_002309063.1| predicted protein [Populus trichocarpa]
gi|222855039|gb|EEE92586.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+WWRL+T +LH G+FH+ + +LL G ++ + +G L+Y + G G+L S L
Sbjct: 106 QWWRLITCNWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKVGLLYVISGFGGSLLSALFI 165
Query: 332 PEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
+VG +G +F ++G+ L N + A V+ F ++ A++ + VD
Sbjct: 166 QSNISVGASGALFGLLGSMLSELITNWTIYANQVAA--FITLVVIIAVNLALGILPHVDN 223
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNS 421
+AH+G +G + GF+ Q G S R +
Sbjct: 224 FAHIGGFLSGFLLGFVFLIRPQFGWFSQRRA 254
>gi|297822631|ref|XP_002879198.1| hypothetical protein ARALYDRAFT_481823 [Arabidopsis lyrata subsp.
lyrata]
gi|297325037|gb|EFH55457.1| hypothetical protein ARALYDRAFT_481823 [Arabidopsis lyrata subsp.
lyrata]
Length = 387
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLH 330
E WRL T ++LH+G+FHV + +L+ G ++ + +G L+Y + G G+ L+S +
Sbjct: 126 EVWRLFTCIWLHAGVFHVLANMLSLIFIGIRLEQEFGFVRIGLLYMISGFGGSLLSSLFN 185
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
+VG +G +F ++GA L N + A + + I A++ + VD
Sbjct: 186 RAGISVGASGALFGLLGAMLSELLTNWTIYANKFAALL--TLIFIIAINLAVGILPHVDN 243
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANP 435
+AHLG +G + GF+ Q G + RN+ R YA P
Sbjct: 244 FAHLGGFTSGFLLGFVFLIRPQYGYFNQRNNP-------RSYAAP 281
>gi|255030928|ref|ZP_05302879.1| hypothetical protein LmonL_20683 [Listeria monocytogenes LO28]
Length = 199
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G K N LI GEWWR ++P+FLHSGL H+A + L G + YG + + LI LG
Sbjct: 136 WGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLILLLG 195
Query: 320 GISG 323
GI G
Sbjct: 196 GICG 199
>gi|223478122|ref|YP_002582479.1| hypothetical protein [Thermococcus sp. AM4]
gi|214033348|gb|EEB74175.1| hypothetical protein TAM4_1542 [Thermococcus sp. AM4]
Length = 207
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 27/190 (14%)
Query: 233 IDVAVFLFE------IASPIRNSEFGFFSLPLLYGAKINELIL-VGEWWRLVTPMFLHSG 285
I+VAV+L+E IA P S + L L +N L+ EWWRL T MF+H
Sbjct: 22 INVAVYLYELYLSGSIAGP---SLYALLKLAL-----VNVLVTQYHEWWRLFTAMFVHLS 73
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGG-TGPVF 343
H+A++ + L+ G Q+ G + + ++Y G+ GN+ S L P GG +G +F
Sbjct: 74 WIHLAMNTFFLIYLGSQLELFVGRWRYLVLYITAGLFGNVLSVALMDPYTISGGASGALF 133
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGII 402
I GA ++ + + ++ Q A+ + F+I+++ P V+ AHLG GI
Sbjct: 134 GIAGA---------LIMIEGILKKNIQSALANAFFLFLINSWMPHVNAIAHLGGLIVGIA 184
Query: 403 YGFLTCPLVQ 412
G++ V+
Sbjct: 185 LGYIYGNYVK 194
>gi|88195357|ref|YP_500161.1| rhomboid family protein, partial [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|87202915|gb|ABD30725.1| rhomboid family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
Length = 336
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|423671683|ref|ZP_17646687.1| hypothetical protein IKO_04961 [Bacillus cereus VDM034]
gi|401291504|gb|EJR97175.1| hypothetical protein IKO_04961 [Bacillus cereus VDM034]
Length = 190
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 249 SEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYG 308
S+F F L A NE I GEWWR++T + +H L H + L FG + K G
Sbjct: 28 SDFSLFHL-----AAYNEYIAKGEWWRVITSLLVHVDLQHFLSNSICLFAFGSSIEKQLG 82
Query: 309 PFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
F+F +I+ L GI GN++S++ P + G +G +F ++GA L
Sbjct: 83 HFSFIIIFFLSGILGNISSYIIMPLEYIHAGASGGIFGLLGAQL 126
>gi|407927474|gb|EKG20366.1| Peptidase S54 rhomboid [Macrophomina phaseolina MS6]
Length = 557
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+W+R + P+FLH GL H+ + +T G + K G FFL+Y GI GN+ +
Sbjct: 289 QWYRFIVPIFLHGGLIHIGFNMLVQVTVGRDMEKLIGSIRFFLVYFAAGIFGNVLGANYA 348
Query: 332 PE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA-----ILSTALSFIISN 384
P P+VG +G +F II L+ DL+ ER+ K +L ++F++
Sbjct: 349 PNGSPSVGASGAIFGIIALTLL------DLLYH-WKERLNPKRELLFIMLDVVIAFVLGL 401
Query: 385 FGPVDTWAHLGAAFTGIIYG 404
+D +AH+G G+ G
Sbjct: 402 LPGLDNFAHIGGFIMGLGLG 421
>gi|418670564|ref|ZP_13231935.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|421121687|ref|ZP_15581980.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410345538|gb|EKO96634.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410753946|gb|EKR15604.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
Length = 226
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 16/161 (9%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y
Sbjct: 73 WGANRRIETLAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFS 132
Query: 320 GISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L +
Sbjct: 133 GLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIMIV 185
Query: 379 SFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
+FI++ FG +D AH+G +G + G + L Q G
Sbjct: 186 TFILTGLLWGLFGGIDNAAHIGGLVSGTLSGII---LFQFG 223
>gi|417897083|ref|ZP_12541026.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
gi|341840349|gb|EGS81869.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
Length = 372
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-L 329
GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G+ GN S
Sbjct: 200 GEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSF 259
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
+T +VG +G +F +IG+ + +K K + + + IL +S +SN V
Sbjct: 260 NTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIV- 317
Query: 390 TWAHLGAAFTGII 402
AH+G G++
Sbjct: 318 --AHIGGFIGGLL 328
>gi|325845136|ref|ZP_08168445.1| peptidase, S54 family [Turicibacter sp. HGF1]
gi|325488801|gb|EGC91201.1| peptidase, S54 family [Turicibacter sp. HGF1]
Length = 423
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 10/220 (4%)
Query: 162 DAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEET 221
D + + D T ++ SI ++S M +L + +K ++ + L Q
Sbjct: 116 DIQRADDFTQNEDIKQFYSSIERASLERSMSELIIEMQQTSKAKALNVRKMLEFQ----- 170
Query: 222 SNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMF 281
S ++I +++ V +FL P++N + +GAK N LI+ GE+WRL+TP
Sbjct: 171 SKSFVIIGFLALLVILFLMIQIQPVKN-----IGTAIEFGAKYNPLIIAGEYWRLLTPSL 225
Query: 282 LHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGP 341
+H LFH+ + + FG + +G + +I GNL SF ++G +
Sbjct: 226 IHLQLFHLLFNAIFIYQFGKIIEHLFGWWRLTIIIIGSAFLGNLFSFAFIENVSLGASTV 285
Query: 342 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 381
+ ++GA L +N+ + V +F + S + I
Sbjct: 286 AYGLLGAMLFLGIENRKMFMHLVKGMIFPIMLFSIVWAII 325
>gi|419760008|ref|ZP_14286293.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
gi|407515047|gb|EKF49833.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
Length = 223
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 18/164 (10%)
Query: 256 LPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
L L++GA+ L+ G+W+R+VT MF+H G H+ + +AL G V YG F
Sbjct: 33 LYLMFGAQYGPLVSHGQWFRIVTSMFVHGGFIHLIFNMYALFFLGRIVENVYGTEKFLTF 92
Query: 316 YTLGGISGNL-TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL 374
Y L GI GNL T + +VG +G +F +IG F+ KD + K I
Sbjct: 93 YFLSGIVGNLATQIFYYNSFSVGASGAIFGLIGVLFAAGFR------KDTPYSL--KPIT 144
Query: 375 STA-LSFIISN--FG-----PVDTWAHLGAAFTGIIYGFLTCPL 410
+A L I+ N FG ++ AH+G TG++ G++ PL
Sbjct: 145 GSALLPMIVINIIFGIMPGTNINNAAHIGGFLTGMLLGYM-IPL 187
>gi|456824612|gb|EMF73038.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
LT1962]
Length = 226
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 16/161 (9%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y
Sbjct: 73 WGANRRIETLAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFS 132
Query: 320 GISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L +
Sbjct: 133 GLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIMIV 185
Query: 379 SFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
+FI++ FG +D AH+G +G + G + L Q G
Sbjct: 186 TFILTGLLWGLFGGIDNAAHIGGLVSGTLSGII---LFQFG 223
>gi|297582849|ref|YP_003698629.1| rhomboid family protein [Bacillus selenitireducens MLS10]
gi|297141306|gb|ADH98063.1| Rhomboid family protein [Bacillus selenitireducens MLS10]
Length = 255
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 20/212 (9%)
Query: 218 TEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLY--GAKINELILVGEWWR 275
+E S +S+L+SI + + I FGF ++ G N I +GE+WR
Sbjct: 9 SEYISTYKAVSVLISICLFFY-------IWVYWFGFLGGNEIFALGVGWNFAIAMGEYWR 61
Query: 276 LVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEP 334
LVTP+FLH GL HV + +AL FGP + G F +++ + N+ +F L P
Sbjct: 62 LVTPIFLHGGLMHVMFNSFALFLFGPWLEAKLGISRFVMLFLGTAVIANIVTFLLQGPNY 121
Query: 335 T-VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
+ VG +G ++ + G +L KDL+ + S+ + I+ ++F+ N G ++ AH
Sbjct: 122 SHVGASGAIYGLFGVYLYIVLLRKDLMDQVSSQMIVTIIIIGVIMTFV--NPG-INILAH 178
Query: 394 LGAAFTGIIYGFLTCPLVQLGDASSRNSQEEG 425
L G+I G PL G SR S + G
Sbjct: 179 L----FGLIAGAALAPLFLTG--VSRWSNQLG 204
>gi|345564498|gb|EGX47460.1| hypothetical protein AOL_s00083g396 [Arthrobotrys oligospora ATCC
24927]
Length = 482
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 9/157 (5%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+WWR + PMF+H+GL H+A + L G + + G F ++Y GI G +
Sbjct: 234 QWWRFILPMFMHAGLIHIAFNLLIQLRLGTDMEREIGIIRFAIVYISSGIFGFVLGGNFA 293
Query: 332 PE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
P+ + G +G +F I+ L+ F V + +F I+ A+SF++ VD
Sbjct: 294 PQGLASTGASGALFGILALVLLDLFYTWKQRESPVKDLIF--LIIDFAISFVLGLLPGVD 351
Query: 390 TWAHLGAAFTGIIYG--FLTCPLV---QLGDASSRNS 421
+AH+G G+ G F+ P +LG S NS
Sbjct: 352 NFAHIGGFLMGLALGLAFMRSPPALQSKLGKGESYNS 388
>gi|326428155|gb|EGD73725.1| hypothetical protein PTSG_05431 [Salpingoeca sp. ATCC 50818]
Length = 745
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+W+R T +F+H+G+ H+ + T V + G L+YT+ + GNL S + +
Sbjct: 545 QWYRFFTSIFVHAGIIHIFIVATFQWTAAAAVERKCGFLRMLLMYTIACVGGNLVSGIFS 604
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P P VG G VF ++G ++ F + +I + +S+ + ++ A+ F I +D
Sbjct: 605 PLYPQVGAAGGVFGVLGISIVDLFHSWPVIERPMSKLL--SLLIEIAVLFFIGTLPWIDN 662
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLG 414
+AH+G G + + P V G
Sbjct: 663 FAHIGGFVFGAVSAVVFLPYVTFG 686
>gi|256763410|ref|ZP_05503990.1| membrane-associated serine protease [Enterococcus faecalis T3]
gi|256684661|gb|EEU24356.1| membrane-associated serine protease [Enterococcus faecalis T3]
Length = 230
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LH 330
E+WR +TP+FLH G H+ L+ L G QV YG + + IY L GI+GN+ SF
Sbjct: 55 EYWRFITPIFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG 114
Query: 331 TPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPV 388
TP + G + +F + GA++I +D M Q+ + ++ + + F V
Sbjct: 115 TPNSVSAGASTALFGLFGAFVILGRHFRD---NPAIMYMVQRYSMFIVINLLFNLFSSSV 171
Query: 389 DTWAHLGAAFTGII 402
D H+G G++
Sbjct: 172 DMMGHVGGLIGGLL 185
>gi|224476658|ref|YP_002634264.1| hypothetical protein Sca_1171 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421265|emb|CAL28079.1| putative membrane protein [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 486
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++I++ V+LF S+ L G ++ ++ GEW+RLVT MFLH H+
Sbjct: 162 LITINIIVWLFMFLVLNAFSDTRLIDL----GGLVHFNVVHGEWYRLVTSMFLHFNFEHI 217
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + IY + GI GNL S + +VG +G +F +IG+
Sbjct: 218 LMNMLSLFIFGKLVEAIVGHWKMLGIYLISGIFGNLVSLAIDNSSISVGASGAIFGLIGS 277
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
+ +K K + + + IL T +S I+N V+ +AH
Sbjct: 278 LFAMMYISKQYDRKSLFQLIGVLLIL-TFVSLFITN---VNIYAH 318
>gi|338731999|ref|YP_004670472.1| hypothetical protein SNE_A01030 [Simkania negevensis Z]
gi|336481382|emb|CCB87981.1| hypothetical protein SNE_A01030 [Simkania negevensis Z]
Length = 336
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 16/158 (10%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +G + +L GEWWRL+T +F+H GL H+ ++ +AL + G + G + FF+ Y
Sbjct: 33 LHWGGNSSYEVLSGEWWRLLTSLFIHIGLIHLLVNMYALFSMGRFLESVIGSYLFFVSYL 92
Query: 318 LGGISGNLTSFLHTPEPTV---GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL 374
+ G+ + SFL E + G +G + I G + F I + ER +KA+L
Sbjct: 93 VSGLISGIASFLFHQETMIVSAGASGAIAGIFGMGCVILFT----IPMSIEER--KKALL 146
Query: 375 STALSFIISNF------GPVDTWAHLGAAFTGIIYGFL 406
+ + + +N +D AHLG GI+ G +
Sbjct: 147 N-CMYVLFANVMYAFKSHDLDHSAHLGGFACGILLGLV 183
>gi|403387738|ref|ZP_10929795.1| membrane associated peptidase [Clostridium sp. JC122]
Length = 216
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 8/148 (5%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
++ G +N L+ GE++RL T FLH+ + H+ L+ AL G V K G F ++Y
Sbjct: 54 IVLGGMVNLLVKNGEYYRLFTAGFLHASVLHLTLNMIALNAIGSIVEKVLGKGKFIIVYI 113
Query: 318 LGGISGNLTSFLHTPEP-----TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA 372
L I + S++ +VG +G +F ++G+ LI F NK + K V + +
Sbjct: 114 LSLIFASYGSYVVANVKLGIGISVGASGAIFGLLGSLLIIVFLNKKVFGKTVLRGITEVI 173
Query: 373 ILSTALSFIISNFGPVDTWAHLGAAFTG 400
+++ + F + N +D AH+ G
Sbjct: 174 VVNLLIGFFVPN---IDITAHVTGGIAG 198
>gi|313239739|emb|CBY14624.1| unnamed protein product [Oikopleura dioica]
Length = 386
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 25/214 (11%)
Query: 253 FFSLPLLYGAKINELILVGEW---WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGP 309
FFS + + +LV W WRL T FLHSGL H+ +C L G + +GP
Sbjct: 159 FFSKKISLSLRFRNRLLVEIWIPVWRLWTYQFLHSGLEHIVGNCIVLGALGIVLELIHGP 218
Query: 310 FTFFLIYTLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERM 368
IYTLG ++G + + + TP + VG +G +A++ A++ N D++ V
Sbjct: 219 VRVGAIYTLGVVTGGILALVVTPCQSLVGASGGCYALMAAFIANGIMNMDVMDTIVKLLH 278
Query: 369 FQKA----ILSTALSFII--SNFGPVDTW-AHLGAAFTGIIYGFLTCPLVQLGDASSRNS 421
F ++ +F + +N G +W AHLG G++ G C L +N
Sbjct: 279 FLPVSIFLLVDVGYTFYMENTNSGYRVSWAAHLGGVVAGLLAG--ICIL--------KNF 328
Query: 422 QEEGITLIRQYANPCKSLIVFTIFVIILGSFIFV 455
++ I ++A S++ F+I + + ++FV
Sbjct: 329 EKSSNEKILKWA----SIVGFSILFLAIAVYLFV 358
>gi|418309099|ref|ZP_12920674.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
gi|365235250|gb|EHM76170.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
Length = 364
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIALVIL-VGVS 308
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN V AH+G G++
Sbjct: 309 LFMSNINIV---AHIGGFIGGLL 328
>gi|162449650|ref|YP_001612017.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
gi|161160232|emb|CAN91537.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
Length = 565
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA E + GE +RL+ FLH+ H+ ++ AL +FGP + GP F L+Y
Sbjct: 212 GANSGEAVRHGELYRLLASAFLHADPMHLFVNMLALWSFGPMLEALLGPRRFLLLYGASA 271
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
+ G+L S + +VG +G ++ ++ A + + L+ + +M +A L L+
Sbjct: 272 LGGSLASAMLEDRWSVGASGAIWGLMTAGIGVALRPHGLLPPAMIAQMRSRAWLPLGLNL 331
Query: 381 IISNFGPVDTWAHLGAAFTG 400
+ S VD AHLG G
Sbjct: 332 VYSFQPGVDLLAHLGGGVVG 351
>gi|323490567|ref|ZP_08095773.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
gi|323395833|gb|EGA88673.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
Length = 202
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
YG N I G+WWR TPMFLH+G+ H+ + ++L FGP++ + G F IY L
Sbjct: 43 FYGVGSNFYIAEGQWWRFFTPMFLHNGVMHLLFNMFSLFLFGPELERLTGKVRFTTIYLL 102
Query: 319 GGISGNLTSFLHTPEPT--VGGTGPVFAIIGAW--LIYQFQNKDLIAKDVSERMFQKAIL 374
G + ++ P VG +G +F + GA+ L+Y + + L + + + ++
Sbjct: 103 AGFFASAATYFLQPLDYFHVGASGAIFGVFGAFGALVY-YGGRAL--PQLKQIILPIIVI 159
Query: 375 STALSFIISNFGPVDTWAHLGAAFTGIIYG 404
S ++F+ N V+ AH+ TG + G
Sbjct: 160 SIVMTFLTPN---VNVTAHIAGMITGFLIG 186
>gi|321259830|ref|XP_003194635.1| hypothetical protein CGB_F1590W [Cryptococcus gattii WM276]
gi|317461107|gb|ADV22848.1| hypothetical protein CNBF1190 [Cryptococcus gattii WM276]
Length = 530
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFL 329
+WWR + P+FLH G+ H+ ++ +T QV + G F ++Y LGGI G + +F
Sbjct: 312 QWWRFILPIFLHVGIIHLIINMLVQITASAQVEREMGTIPFLIVYMLGGIYGFVLGGNFT 371
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAK-DVSERMFQKA---ILSTALSFIISNF 385
T P+VG +G +FA L+ DL+ ER KA +L + F +
Sbjct: 372 RTGIPSVGASGALFATNACVLV------DLVLHWKYEERPKLKACLLVLELGIGFAMGYI 425
Query: 386 -GPVDTWAHLGAAFTGIIYGFLTCPLV 411
VD AHLG GI+ G + P +
Sbjct: 426 PNAVDGLAHLGGWAMGILCGIILYPAI 452
>gi|30260425|ref|NP_842802.1| rhomboid family protein [Bacillus anthracis str. Ames]
gi|47525506|ref|YP_016855.1| rhomboid family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49183268|ref|YP_026520.1| rhomboid family protein [Bacillus anthracis str. Sterne]
gi|165871540|ref|ZP_02216186.1| rhomboid family protein [Bacillus anthracis str. A0488]
gi|167640337|ref|ZP_02398602.1| rhomboid family protein [Bacillus anthracis str. A0193]
gi|170707901|ref|ZP_02898351.1| rhomboid family protein [Bacillus anthracis str. A0389]
gi|177653388|ref|ZP_02935598.1| rhomboid family protein [Bacillus anthracis str. A0174]
gi|190567414|ref|ZP_03020328.1| rhomboid family protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227812917|ref|YP_002812926.1| rhomboid family protein [Bacillus anthracis str. CDC 684]
gi|229604752|ref|YP_002864876.1| rhomboid family protein [Bacillus anthracis str. A0248]
gi|254734931|ref|ZP_05192643.1| rhomboid family protein [Bacillus anthracis str. Western North
America USA6153]
gi|254754913|ref|ZP_05206948.1| rhomboid family protein [Bacillus anthracis str. Vollum]
gi|254756956|ref|ZP_05208984.1| rhomboid family protein [Bacillus anthracis str. Australia 94]
gi|421511441|ref|ZP_15958311.1| rhomboid family protein [Bacillus anthracis str. UR-1]
gi|30253746|gb|AAP24288.1| rhomboid family protein [Bacillus anthracis str. Ames]
gi|47500654|gb|AAT29330.1| rhomboid family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49177195|gb|AAT52571.1| rhomboid family protein [Bacillus anthracis str. Sterne]
gi|164712644|gb|EDR18175.1| rhomboid family protein [Bacillus anthracis str. A0488]
gi|167511739|gb|EDR87120.1| rhomboid family protein [Bacillus anthracis str. A0193]
gi|170127259|gb|EDS96136.1| rhomboid family protein [Bacillus anthracis str. A0389]
gi|172081428|gb|EDT66501.1| rhomboid family protein [Bacillus anthracis str. A0174]
gi|190561541|gb|EDV15512.1| rhomboid family protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227004612|gb|ACP14355.1| rhomboid family protein [Bacillus anthracis str. CDC 684]
gi|229269160|gb|ACQ50797.1| rhomboid family protein [Bacillus anthracis str. A0248]
gi|401818519|gb|EJT17719.1| rhomboid family protein [Bacillus anthracis str. UR-1]
Length = 190
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 20/165 (12%)
Query: 253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
FF P+ A +E I GEWWRL+T +F+H L H + L G + K G F+F
Sbjct: 30 FFLFPM---AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSF 86
Query: 313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGA--WLIY-QFQNKDLIAKDVSER 367
+I+ L GI GN+ S+L P + G +G +F ++GA +L+Y ++++ + KD++
Sbjct: 87 IIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSN--PKDIAIF 144
Query: 368 MFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
IL + + F P + +HL TG++ G + PL+
Sbjct: 145 SIMICIL-----LLFTFFNPSANPISHL----TGLVIGGICTPLL 180
>gi|225440378|ref|XP_002270642.1| PREDICTED: inactive rhomboid protein 1 [Vitis vinifera]
Length = 388
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL+T ++LH G+FH+ + +LL G ++ + +G L+Y + G G+L S L E
Sbjct: 130 WRLITCIWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKVGLLYVISGFGGSLLSGLFIQE 189
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++G L N + A ++ F ++ A++ + VD +A
Sbjct: 190 NISVGASGALFGLLGGMLSELITNWSIYANKLAA--FLTLVIIIAINLAVGILPHVDNFA 247
Query: 393 HLGAAFTGIIYGFLTCPLVQLGDASSRNSQEE 424
H+G +G + GF+ Q G S + E
Sbjct: 248 HIGGFLSGFLLGFVFLIRPQFGWVSQIYASPE 279
>gi|88800271|ref|ZP_01115838.1| hypothetical protein MED297_14685 [Reinekea blandensis MED297]
gi|88776986|gb|EAR08194.1| hypothetical protein MED297_14685 [Reinekea sp. MED297]
Length = 209
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 5/174 (2%)
Query: 242 IASPIRNSEFGFFSLPLLY--GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTF 299
+A I N F +S+ LY GA + + G+WWRL T +F+H GL H+ + + L
Sbjct: 25 VAMSIMNLSFTQYSIQSLYWLGANFSPWVDAGQWWRLGTSIFVHFGLMHLVFNSVSTLFL 84
Query: 300 GPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKD 358
G + G F +++ G+ ++ S++ E + G +G VF + G +++ N
Sbjct: 85 GRFLEPLLGHVAFIVVFLTTGLCASMASYVFNKEVYSAGASGAVFGLFGLFIVLVLSN-- 142
Query: 359 LIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQ 412
L+ +V + + ++ + PVD AHLG +G++ G + PL++
Sbjct: 143 LVRPEVRNEWLKSIGVILVINLGMGLVLPVDNAAHLGGLASGLVAGVIALPLIR 196
>gi|42569431|ref|NP_180469.3| protein RHOMBOID-like 1 [Arabidopsis thaliana]
gi|110737035|dbj|BAF00472.1| hypothetical protein [Arabidopsis thaliana]
gi|330253108|gb|AEC08202.1| protein RHOMBOID-like 1 [Arabidopsis thaliana]
Length = 389
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLH 330
E WRL T ++LH+G+FHV + +L+ G ++ + +G L+Y + G G+ L+S +
Sbjct: 128 EVWRLFTCIWLHAGVFHVLANMLSLIFIGIRLEQEFGFVRIGLLYMISGFGGSLLSSLFN 187
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
+VG +G +F ++GA L N + A + + I A++ + VD
Sbjct: 188 RAGISVGASGALFGLLGAMLSELLTNWTIYANKFAALL--TLIFIIAINLAVGILPHVDN 245
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANP 435
+AHLG +G + GF+ Q G + RN+ R YA P
Sbjct: 246 FAHLGGFTSGFLLGFVFLIRPQYGYFNQRNNP-------RGYAAP 283
>gi|386734109|ref|YP_006207290.1| rhomboid family protein [Bacillus anthracis str. H9401]
gi|384383961|gb|AFH81622.1| Rhomboid family protein [Bacillus anthracis str. H9401]
Length = 190
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 20/165 (12%)
Query: 253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
FF P+ A +E I GEWWRL+T +F+H L H + L G + K G F+F
Sbjct: 30 FFLFPM---AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSF 86
Query: 313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGA--WLIY-QFQNKDLIAKDVSER 367
+I+ L GI GN+ S+L P + G +G +F ++GA +L+Y ++++ + KD++
Sbjct: 87 IIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSN--PKDIAIF 144
Query: 368 MFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
IL + + F P + +HL TG++ G + PL+
Sbjct: 145 SIMICIL-----LLFTFFNPSANPISHL----TGLVIGGIYTPLL 180
>gi|345007980|ref|YP_004810334.1| rhomboid family protein [Streptomyces violaceusniger Tu 4113]
gi|344034329|gb|AEM80054.1| Rhomboid family protein [Streptomyces violaceusniger Tu 4113]
Length = 294
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 23/210 (10%)
Query: 221 TSNLYLIS-ILVSIDVAVFLFEIASPIR-NSEFGFFSLPLLYGAKINELILVGEWWRLVT 278
TS+ LI+ ILV+I++AV+L +++ R ++ GA + G+WWRLVT
Sbjct: 76 TSDPRLITKILVAINIAVWLAALSAGDRLVNDLDLVGRAYDPGAAQIVGVAEGQWWRLVT 135
Query: 279 PMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTV 336
+FLH L H+A + +L G + + G F ++Y L G+ G+ S+L +P++
Sbjct: 136 SIFLHQQLIHIAFNMLSLWWIGGPLEAALGRVRFIVLYILSGLGGSALSYLLAAQNQPSL 195
Query: 337 GGTGPVFAIIGAWLIYQFQ-NKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW-AHL 394
G +G +F ++GA + + N D+ + I AL+ + + W AH+
Sbjct: 196 GASGAIFGLLGATAVLMRRLNYDM----------RPVIALLALNLLFTFTWSGIAWQAHV 245
Query: 395 GAAFTGII--YGFLTCP-----LVQLGDAS 417
G G + YG + P LVQ G +
Sbjct: 246 GGLVAGTVVAYGMVHAPREKRALVQRGTCA 275
>gi|422293068|gb|EKU20369.1| hypothetical protein NGA_2130210, partial [Nannochloropsis gaditana
CCMP526]
Length = 249
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 24/208 (11%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++++VA+F+ + P S+ L+ GAK ++LI GE +RL TPM LH + H+
Sbjct: 23 LLALNVAIFIAQQVDP---------SITLM-GAKNDQLIRRGELYRLFTPMLLHGDIQHL 72
Query: 290 ALSCWALLTFGPQVCKSY-GPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAIIG 347
+ + + G + + GP + +Y L G++GN SF+ P ++G + V ++G
Sbjct: 73 MANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLG 132
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
A ++ ++++ + + R +A++ + + S +D + HLG G + G+L
Sbjct: 133 AVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSS--ARIDNFGHLGGLVGGAVCGWLF 190
Query: 408 CP-LVQLGDASSRNSQEEGITLIRQYAN 434
P LV L + EG+ R Y N
Sbjct: 191 GPRLVPL-------TTREGV--FRGYVN 209
>gi|65317677|ref|ZP_00390636.1| COG0705: Uncharacterized membrane protein (homolog of Drosophila
rhomboid) [Bacillus anthracis str. A2012]
Length = 167
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 20/165 (12%)
Query: 253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
FF P+ A +E I GEWWRL+T +F+H L H + L G + K G F+F
Sbjct: 7 FFLFPM---AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSF 63
Query: 313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGA--WLIY-QFQNKDLIAKDVSER 367
+I+ L GI GN+ S+L P + G +G +F ++GA +L+Y ++++ + KD++
Sbjct: 64 IIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSN--PKDIAIF 121
Query: 368 MFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
IL + + F P + +HL TG++ G + PL+
Sbjct: 122 SIMICIL-----LLFTFFNPSANPISHL----TGLVIGGICTPLL 157
>gi|307154690|ref|YP_003890074.1| rhomboid family protein [Cyanothece sp. PCC 7822]
gi|306984918|gb|ADN16799.1| Rhomboid family protein [Cyanothece sp. PCC 7822]
Length = 514
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 23/200 (11%)
Query: 223 NLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLY--GAKINELILVGEWWRLVTPM 280
N Y+ IL+++++ F EI SE +L +LY G + + IL G+WWR+VT
Sbjct: 316 NSYMTLILIALNLGAFALEIYQG--GSE----NLDILYNLGGLVPQEILAGQWWRVVTAN 369
Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISG-NLTSFL-----HTPEP 334
FLH G H+A + L G V + G F + L+Y G+ L S L +T E
Sbjct: 370 FLHYGWLHLASNMMGLYFVGRFVELALGKFRYLLVYFFSGVGAMTLFSLLSIKLGNTGEI 429
Query: 335 TVGGTGPVFAIIGAWLIYQFQNKDLIAKD--VSERMFQKAILSTALSFIISNFGP-VDTW 391
VG + + ++G I+ +D + ++ + Q + L FI P V +
Sbjct: 430 LVGASAGIMGLVGG--IFALFVRDWWQEKSPIATKRLQVIFVVVCLQFIFDRLVPEVSSL 487
Query: 392 AHLGAAFTGIIYGFLTCPLV 411
+H F G++ GF+T L+
Sbjct: 488 SH----FLGLVIGFITGGLL 503
>gi|336266774|ref|XP_003348154.1| hypothetical protein SMAC_03999 [Sordaria macrospora k-hell]
gi|380091090|emb|CCC11296.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 555
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 15/174 (8%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT--SFL 329
+WWR +TPMFLH+G+ H+ + +T G ++ +S G FF++Y GI G + +F
Sbjct: 281 QWWRFITPMFLHAGVIHIGFNMLLQMTIGREMERSIGSIRFFIVYVSAGIFGFVMGGNFA 340
Query: 330 HTPEPTVGGTGPVFAIIG---AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
T G +G +F +I L+Y ++++ KD+ +F L ++F++
Sbjct: 341 ANGMQTTGASGALFGVIALLLLDLLYSWRDRKSPWKDL---LF--IALDIVIAFVLGLLP 395
Query: 387 PVDTWAHLGAAFTGIIYGF--LTCPLV---QLGDASSRNSQEEGITLIRQYANP 435
+D +AH+G G+ G L P ++GD + + +RQ A P
Sbjct: 396 GLDNFAHIGGFLAGLALGICVLQSPNALRRRIGDEPPYSQVVDTNGFLRQGAPP 449
>gi|163938239|ref|YP_001643123.1| rhomboid family protein [Bacillus weihenstephanensis KBAB4]
gi|423514497|ref|ZP_17491004.1| hypothetical protein IG3_05970 [Bacillus cereus HuA2-1]
gi|163860436|gb|ABY41495.1| Rhomboid family protein [Bacillus weihenstephanensis KBAB4]
gi|402442072|gb|EJV74014.1| hypothetical protein IG3_05970 [Bacillus cereus HuA2-1]
Length = 182
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 249 SEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYG 308
S+F F L A NE I GEWWR++T + +H L H + L FG + K G
Sbjct: 28 SDFSLFHL-----AAYNEYIAKGEWWRVITSLLVHVDLQHFLSNSICLFVFGSSIEKQLG 82
Query: 309 PFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
F+F +I+ L GI GN++S++ P + G +G +F ++GA L
Sbjct: 83 HFSFIIIFFLSGILGNISSYIIMPLEYIHAGASGGIFGLLGAQL 126
>gi|217072548|gb|ACJ84634.1| unknown [Medicago truncatula]
gi|388512075|gb|AFK44099.1| unknown [Medicago truncatula]
Length = 326
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRLV+ ++LH+G+ H+A + +L+ G ++ + +G ++Y + G G++ S L +
Sbjct: 115 WRLVSCIWLHAGIIHLAANMISLVFIGIRLEQQFGFVRIGIVYLVSGFGGSILSALFIRK 174
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L N + V+ M + ++ +I VD +A
Sbjct: 175 SISVGASGALFGLLGAMLSELITNWSIYTNKVAALM--TLLFIIVINLVIGMLPHVDNFA 232
Query: 393 HLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQY 432
H+G TG + GF+ P Q G + R+ G+ L +Y
Sbjct: 233 HIGGFLTGFLLGFIFLPRPQFGWLAQRHV-PAGVRLKSKY 271
>gi|357400681|ref|YP_004912606.1| hypothetical protein SCAT_3097 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386356736|ref|YP_006054982.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337767090|emb|CCB75801.1| conserved membrane protein of unknown function [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365807244|gb|AEW95460.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 282
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 27/210 (12%)
Query: 207 RSLERDLALQRTEETSNLYLIS-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGA--- 262
R +R + +N LI+ IL+ I+VAVFL ++ +LYGA
Sbjct: 51 RQAQRPRTMTGGAVAANPRLITMILIGINVAVFL-----AVQAVGDSLVQDLILYGAWPP 105
Query: 263 -KINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
+ G+W+RL+T FLH + H+ + +L GP + + G F +Y L +
Sbjct: 106 VDPTSGVAEGQWYRLLTATFLHQNVMHIGFNMLSLWWIGPGLEVALGRVRFLAVYLLSAL 165
Query: 322 SGNLTSFL--HTPEPTVGGTGPVFAIIGAWLI----YQFQNKDLIAKDVSERMFQKAILS 375
G+ SFL + ++G +G VF ++GA + ++ ++ ++ AI+
Sbjct: 166 GGSALSFLLANPNAGSLGASGAVFGLLGATFVLMRRLRYDSRPIV-----------AIIV 214
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGF 405
L F + G +D AH+G TG + F
Sbjct: 215 LNLFFTFAQTGTIDWRAHIGGLVTGAVVAF 244
>gi|336377068|gb|EGO05403.1| hypothetical protein SERLA73DRAFT_174545 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390111|gb|EGO31254.1| hypothetical protein SERLADRAFT_456141 [Serpula lacrymans var.
lacrymans S7.9]
Length = 419
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFL 329
+W+R +T +FLH+G H+ L+ A LT Q+ + G F + Y GI GN+ +F
Sbjct: 208 QWFRFITAIFLHAGFIHIILNMIAQLTVSAQIEREMGSAGFLITYFAAGIFGNVLGGNFS 267
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ--KAILSTALSFIISNFGP 387
P++G +G +F + + F + + V + +F + IL AL +I
Sbjct: 268 LVGAPSIGASGAIFGTVAVTWVDLFAHWKYQYRPVRKLVFMTIELILGIALGYIPY---- 323
Query: 388 VDTWAHLGAAFTGIIYGFLTCPLV 411
VD +AHLG G++ G P++
Sbjct: 324 VDNFAHLGGLCMGLLVGTTLYPVI 347
>gi|418952134|ref|ZP_13504176.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
gi|375369792|gb|EHS73653.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
Length = 303
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 129 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 188
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL +S
Sbjct: 189 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLISLVIL-VGVS 247
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
+SN ++ AH+G G++
Sbjct: 248 LFMSN---INIVAHIGGFIGGLL 267
>gi|422866646|ref|ZP_16913264.1| peptidase, S54 family, partial [Enterococcus faecalis TX1467]
gi|329578206|gb|EGG59610.1| peptidase, S54 family [Enterococcus faecalis TX1467]
Length = 214
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LH 330
E+WR + PMFLH G H+ L+ L G QV YG + + IY L GI+GN+ SF
Sbjct: 39 EYWRFINPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG 98
Query: 331 TPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-GPV 388
TP + G + +F + GA++I +D M Q+ + ++ + + F V
Sbjct: 99 TPNSVSAGASTALFGLFGAFVILGRHFRD---NPAIMYMVQRYSMFIVINLLFNLFSSSV 155
Query: 389 DTWAHLGAAFTGII 402
D H+G G++
Sbjct: 156 DMMGHVGGLIGGLL 169
>gi|335039938|ref|ZP_08533080.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
gi|334180182|gb|EGL82805.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
Length = 253
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YG N I +GE+WRLVTP+FLH L H + +AL+ F P + + G + F +Y
Sbjct: 44 YGVGQNLAIAMGEYWRLVTPIFLHYRLMHFLFNSFALIIFAPAMERLLGRWKFIGLYLAT 103
Query: 320 GISGNLTSFLHTPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
GI+GN +FL P+ +G +G ++ ++G +L KDLI D + IL
Sbjct: 104 GIAGNAGTFLFGPDYYAHLGASGALYGLLGLYLYMVLFRKDLI--DPASSQIVTTILVIG 161
Query: 378 LSFIISNFGPVDTWAHLGAAFTGIIYG 404
L + I G V+ +AHL +G+ +G
Sbjct: 162 LIYTIVMPG-VNLYAHLFGFLSGLAFG 187
>gi|408419938|ref|YP_006761352.1| peptidase S54, rhomboid [Desulfobacula toluolica Tol2]
gi|405107151|emb|CCK80648.1| peptidase S54, rhomboid [Desulfobacula toluolica Tol2]
Length = 247
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 11/139 (7%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
WW L+T +LH GL H+ + AL T P V YG F IYTL GI+G L S++
Sbjct: 75 AWWSLITANWLHGGLLHILFNMLALKTVAPLVMYEYGVCRMFTIYTLTGIAGFLLSYIGN 134
Query: 332 PEPTVGGTGPVFAIIGAWLIY----QFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP 387
T+G + + +IGA L + Q L+ K S + + + F++ N
Sbjct: 135 VYLTIGASSGLCGLIGAALYFGKSRGGQWGQLVYKQTSGWVLSLVL----IGFLMPN--- 187
Query: 388 VDTWAHLGAAFTGIIYGFL 406
++ W H G +G+ G++
Sbjct: 188 INNWGHAGGLISGVFLGWV 206
>gi|242373854|ref|ZP_04819428.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
gi|242348408|gb|EES40010.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
Length = 303
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
+L+ I+V ++L I R S+ + G ++ ++ GEW+RL+T MFLH H
Sbjct: 162 LLIIINVVIWLCMILYLNRFSDVKLLDV----GGLVHFNVVHGEWYRLITSMFLHFNFEH 217
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIG 347
+ ++ +L FG V G + +IY + G+ GN S +T +VG +G +F +IG
Sbjct: 218 ILMNMLSLFIFGKIVESIVGSWRMLIIYFISGLFGNFVSLSFNTSTISVGASGAIFGLIG 277
Query: 348 A 348
A
Sbjct: 278 A 278
>gi|423485537|ref|ZP_17462219.1| hypothetical protein IEU_00160 [Bacillus cereus BtB2-4]
gi|423491262|ref|ZP_17467906.1| hypothetical protein IEW_00160 [Bacillus cereus CER057]
gi|423501942|ref|ZP_17478559.1| hypothetical protein IEY_05169 [Bacillus cereus CER074]
gi|423665251|ref|ZP_17640390.1| hypothetical protein IKM_05667 [Bacillus cereus VDM022]
gi|401151506|gb|EJQ58955.1| hypothetical protein IEY_05169 [Bacillus cereus CER074]
gi|401161716|gb|EJQ69079.1| hypothetical protein IEW_00160 [Bacillus cereus CER057]
gi|401290575|gb|EJR96267.1| hypothetical protein IKM_05667 [Bacillus cereus VDM022]
gi|402441496|gb|EJV73451.1| hypothetical protein IEU_00160 [Bacillus cereus BtB2-4]
Length = 190
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 249 SEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYG 308
S+F F L A NE I GEWWR++T + +H L H + L FG + K G
Sbjct: 28 SDFSLFHL-----AAHNEYIAKGEWWRVITSLLVHVDLQHFLSNSICLFVFGSSIEKQLG 82
Query: 309 PFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
F+F +I+ L GI GN++S++ P + G +G +F ++GA L
Sbjct: 83 HFSFIIIFFLSGILGNISSYIIMPLEYIHAGASGGIFGLLGAQL 126
>gi|422294933|gb|EKU22233.1| hypothetical protein NGA_2130220, partial [Nannochloropsis gaditana
CCMP526]
Length = 249
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 24/208 (11%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++++VA+F+ + P S+ L+ GAK ++LI GE +RL TPM LH + H+
Sbjct: 23 LLALNVAIFIAQQVDP---------SITLM-GAKNDQLIRRGELYRLFTPMLLHGDIQHL 72
Query: 290 ALSCWALLTFGPQVCKSY-GPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAIIG 347
+ + + G + + GP + +Y L G++GN SF+ P ++G + V ++G
Sbjct: 73 MANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLG 132
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
A ++ ++++ + + R +A++ + + S +D + HLG G + G+L
Sbjct: 133 AVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSS--ARIDNFGHLGGLVGGAVCGWLF 190
Query: 408 CP-LVQLGDASSRNSQEEGITLIRQYAN 434
P LV L + EG+ R Y N
Sbjct: 191 GPRLVPL-------TTREGV--FRGYVN 209
>gi|301051972|ref|YP_003790183.1| rhomboid family protein [Bacillus cereus biovar anthracis str. CI]
gi|300374141|gb|ADK03045.1| rhomboid family protein [Bacillus cereus biovar anthracis str. CI]
Length = 156
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 17/156 (10%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
A +E I GEWWRL+T +F+H L H + L G + K G F+F +I+ L GI
Sbjct: 2 AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGI 61
Query: 322 SGNLTSFLHTPEPTV--GGTGPVFAIIGA--WLIY-QFQNKDLIAKDVSERMFQKAILST 376
GN+ S+L P + G +G +F ++GA +L+Y ++++ + KD++ IL
Sbjct: 62 LGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSN--PKDIAIFSIMICIL-- 117
Query: 377 ALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
+ + F P + +HL TG+I G + PL+
Sbjct: 118 ---LLFTFFNPSANPISHL----TGLIIGGICTPLL 146
>gi|268319881|ref|YP_003293537.1| hypothetical protein FI9785_1410 [Lactobacillus johnsonii FI9785]
gi|262398256|emb|CAX67270.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
Length = 228
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 13/168 (7%)
Query: 261 GAKINELILVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA N+L+ VG +WWRL T FLH G H+A + + G + G + F +Y L
Sbjct: 45 GAMNNQLVTVGHQWWRLFTAQFLHIGWLHIASNAVMIYYMGQFMEPLLGHWRFLTVYLLS 104
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKD-VSERMFQKAILST 376
GI GNL S+ + + V G + +F + G + N+ + A + + + AI++
Sbjct: 105 GIGGNLLSYAYVSDSVVSAGASTALFGLFGVVIALYLANRAIPAINYLGRQALALAIINL 164
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEE 424
AL S+ +D HLG G+I GFL + G A R +
Sbjct: 165 ALDLFASH---IDILGHLG----GLISGFLLG--IIFGSAHLRQYHHK 203
>gi|224134785|ref|XP_002321905.1| predicted protein [Populus trichocarpa]
gi|222868901|gb|EEF06032.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 14/183 (7%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRL+T ++LH+G+ H+ + +L+ G ++ + +G ++Y L G G+ L+S
Sbjct: 120 WRLITCIWLHAGIIHLLANMLSLVFIGIRLEQQFGFVRIGVVYLLSGFGGSVLSSLFIRN 179
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG-----P 387
+VG +G +F ++GA L N + + A L T L I+ N
Sbjct: 180 NISVGASGALFGLLGAMLSELITNWSIYTN-------KAAALLTLLVIIVINLAIGILPH 232
Query: 388 VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVI 447
VD +AH+G +G + GF+ P Q G RN G+ + +Y +L + ++ ++
Sbjct: 233 VDNFAHIGGFLSGFLLGFVLLPRPQYGWLERRNV-PSGVGVKSKYRAHQYALWLISVILL 291
Query: 448 ILG 450
I+G
Sbjct: 292 IVG 294
>gi|409386424|ref|ZP_11238834.1| GlpG protein (membrane protein of glp regulon) [Lactococcus
raffinolactis 4877]
gi|399206351|emb|CCK19749.1| GlpG protein (membrane protein of glp regulon) [Lactococcus
raffinolactis 4877]
Length = 227
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 10/173 (5%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRLVTP+F+H G H L+ ++L+ G Q+ +G F +IY L GI GN+ +F P
Sbjct: 61 WRLVTPIFVHIGWEHFLLNFFSLIFIGRQIEDVFGSRRFLVIYLLSGIFGNILAFFVQPN 120
Query: 334 PTVGGTGP-VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTW 391
+ G +F I GA + + K+ + V + Q A+L A + +I+ F P V +
Sbjct: 121 ILLAGASTSLFGIFGAMAMLGYLTKNPSFQAVGK---QFAVLILA-NLVINLFQPAVGIF 176
Query: 392 AHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTI 444
H+G A G++ P + S+ S+ + +T Y ++V TI
Sbjct: 177 GHIGGALGGVLLAAPFAPKI----LQSKISETQKVTFFIIYLVSAVLMVVLTI 225
>gi|424863464|ref|ZP_18287377.1| rhomboid protease GlpG [SAR86 cluster bacterium SAR86A]
gi|400758085|gb|EJP72296.1| rhomboid protease GlpG [SAR86 cluster bacterium SAR86A]
Length = 161
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+WWRL+TPMF+H H+A +C + G ++ K G F FF + I N F +
Sbjct: 13 QWWRLITPMFIHFSFAHLAFNCLWIYILGEKIEKFDGSFVFFCLVIFSAIFSNSLQFFWS 72
Query: 332 PEPTVGG-TGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI----ISNFG 386
GG +G ++A+IG ++ + + D+ ++ I+ L F+ + FG
Sbjct: 73 NTSLFGGLSGVIYALIGFCMVNE-MDSPYGRYDIPPGLYLFMIIWLVLGFLGIVEMFGFG 131
Query: 387 PVDTWAHLGAAFTGIIY 403
V +AHLG +GII+
Sbjct: 132 AVANFAHLGGLISGIIF 148
>gi|441142545|ref|ZP_20962413.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440622490|gb|ELQ85269.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 303
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 101/201 (50%), Gaps = 26/201 (12%)
Query: 221 TSNLYLIS-ILVSIDVAVFLFEIA---SPIRNSEF--GFFSLPLLYGAKINELILVGEWW 274
T++ L++ IL+ I+VAVF+ +A +++ E G F+ L + E GEW+
Sbjct: 85 TADTRLVTKILLGINVAVFIAVLAVGDGLVQDLELIGGAFTREDLQFIGVAE----GEWY 140
Query: 275 RLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-- 332
RL+T +FLH H+ + +L GP + ++G F +Y L G+ G+ S+L
Sbjct: 141 RLLTAVFLHQAPMHIIFNMLSLWWLGPPLEAAFGRVRFLALYLLSGLGGSALSYLLAAQN 200
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQ-NKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
+P++G +G +F ++GA +I + N D+ + ++ AL+ + + P W
Sbjct: 201 QPSLGASGAIFGLLGATVILMRRLNYDM----------RPVLILLALNLVFTFAWPDIAW 250
Query: 392 -AHLGAAFTG--IIYGFLTCP 409
AH+G G + YG + P
Sbjct: 251 QAHVGGLVMGAAVTYGMVHAP 271
>gi|423515085|ref|ZP_17491566.1| hypothetical protein IG7_00155 [Bacillus cereus HuA2-4]
gi|401168048|gb|EJQ75316.1| hypothetical protein IG7_00155 [Bacillus cereus HuA2-4]
Length = 182
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 249 SEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYG 308
S+F F L A NE I GEWWR++T + +H L H + L FG + K G
Sbjct: 28 SDFSLFHL-----AAYNEYIAKGEWWRVITSLLVHVDLQHFLSNSIYLFVFGSSIEKQLG 82
Query: 309 PFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
F+F +I+ L GI GN++S++ P + G +G +F ++GA L
Sbjct: 83 HFSFIIIFFLSGILGNISSYIIMPLEYIHAGASGGIFGLLGAQL 126
>gi|384178164|ref|YP_005563926.1| rhomboid family protein [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|324324248|gb|ADY19508.1| rhomboid family protein [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 190
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 17/156 (10%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
A NE I GEWWRL+T + +H L H + L G + K G F+F +I+ L GI
Sbjct: 36 AASNEYIAKGEWWRLITSLLVHVDLQHFLSNSICLFMLGSSIEKQLGHFSFIIIFFLSGI 95
Query: 322 SGNLTSFLHTPEPTV--GGTGPVFAIIGA--WLIY-QFQNKDLIAKDVSERMFQKAILST 376
GN++S+L P + G +G +F ++GA +L+Y ++++ + +D++ IL
Sbjct: 96 LGNISSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSN--PRDIAIFSIMICIL-- 151
Query: 377 ALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
+ + F P + +HL TG+I G + PL+
Sbjct: 152 ---LLFTFFNPSANPISHL----TGLIIGGICTPLL 180
>gi|45658531|ref|YP_002617.1| hypothetical protein LIC12696 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|421085386|ref|ZP_15546239.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|421103683|ref|ZP_15564280.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45601774|gb|AAS71254.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|410366646|gb|EKP22037.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432022|gb|EKP76380.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|456984467|gb|EMG20522.1| peptidase, S54 family [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 239
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 269 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF 328
L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y G+ G+L S
Sbjct: 95 LAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASI 154
Query: 329 LHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN--- 384
+ P +VG +G +F + GA L L+ D R +K +L ++FI++
Sbjct: 155 VWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIMIVTFILTGLLW 207
Query: 385 --FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
FG +D AH+G +G + G + L Q G
Sbjct: 208 GLFGGIDNAAHIGGLVSGTLSGII---LFQFG 236
>gi|410085331|ref|ZP_11282050.1| Protein aarA [Morganella morganii SC01]
gi|421492312|ref|ZP_15939673.1| hypothetical protein MU9_0840 [Morganella morganii subsp. morganii
KT]
gi|455738629|ref|YP_007504895.1| Protein aarA [Morganella morganii subsp. morganii KT]
gi|400193468|gb|EJO26603.1| hypothetical protein MU9_0840 [Morganella morganii subsp. morganii
KT]
gi|409768040|gb|EKN52104.1| Protein aarA [Morganella morganii SC01]
gi|455420192|gb|AGG30522.1| Protein aarA [Morganella morganii subsp. morganii KT]
Length = 292
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 28/209 (13%)
Query: 222 SNLYLISILVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 279
S + L L ++ V+++++ ASP+ + + LL G + +L L G+WWR +T
Sbjct: 21 SAMLLTFFLALLNTGVYIWQVNYASPLADQVYNM----LLAGGSVYQLSLTGDWWRYITS 76
Query: 280 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPT---- 335
+ LHS FH+ ++ ALL FG G IY GIS + S L
Sbjct: 77 ILLHSDPFHLGVNLIALLVFGINCEALTGKMRMLFIYLFTGISASFASALWQATQNDMSP 136
Query: 336 ---------VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII---- 382
VG +G + + G ++Y + + + V++ + K +L T + I+
Sbjct: 137 LSGIPVTVGVGASGAIMGLAGTTVMYLIRARKDPSVSVADSLRYKNLLITMIVLIVLSVL 196
Query: 383 ----SNFGPV-DTWAHLGAAFTGIIYGFL 406
+ PV D AH G + G+L
Sbjct: 197 SAVPDDEEPVTDNVAHFSGLICGAVLGWL 225
>gi|227818343|ref|YP_002822314.1| rhomboid family protein [Sinorhizobium fredii NGR234]
gi|227337342|gb|ACP21561.1| rhomboid family protein [Sinorhizobium fredii NGR234]
Length = 254
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 33/241 (13%)
Query: 211 RDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELIL- 269
RD R T ++ L++ ++ VFLF+I+ P R E FS L+ EL L
Sbjct: 5 RDAIPTRYPPT----VVWTLIAANILVFLFQISLPPRAEEVFLFSYGLIPSRYFGELKLS 60
Query: 270 -----VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN 324
+ ++ V+ MFLH G H+ L+ W L FGP V G F + Y + G+ +
Sbjct: 61 YPPQDLSDYLPFVSNMFLHGGWLHLILNMWTLWVFGPAVEDRVGLARFAMFYLVCGLVAS 120
Query: 325 LTSFLHTPE---PTVGGTGPVFAIIGAWL-IYQFQNKDLIAKDVSERMFQK--AILSTAL 378
+ P P VG +G + +IG + ++ F +I + +F + A+ A+
Sbjct: 121 SVHAIANPNSVIPAVGASGAIAGVIGCYARMFPFARLVMIVPILFIPLFFEIPALGFAAI 180
Query: 379 SFI------------ISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRN-SQEEG 425
F+ +S+ G V WAH+G G I G++ P+++ + R +EG
Sbjct: 181 WFLMQVIPGVFSLGQLSDVGGVAWWAHIG----GFIAGWILAPVLRRARRTYRKYYPDEG 236
Query: 426 I 426
+
Sbjct: 237 V 237
>gi|42779350|ref|NP_976597.1| rhomboid family protein [Bacillus cereus ATCC 10987]
gi|42735265|gb|AAS39205.1| rhomboid family protein [Bacillus cereus ATCC 10987]
Length = 190
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 17/161 (10%)
Query: 257 PLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIY 316
PL A NE I GEWWRL+T + +H L H + L G + K G +F +I+
Sbjct: 31 PLFPMAASNEYIAKGEWWRLLTSLLVHVDLQHFLFNSICLFVLGSSIEKQLGHLSFIIIF 90
Query: 317 TLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGA--WLIY-QFQNKDLIAKDVSERMFQK 371
L GI GN++S+L P + G +G +F ++GA +L+Y ++++ + +D++
Sbjct: 91 FLSGILGNMSSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSN--PRDIAIFSIMI 148
Query: 372 AILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
IL + + F P + +HL TG+I G + PL+
Sbjct: 149 CIL-----LLFTFFNPSANPISHL----TGLIIGGICTPLL 180
>gi|401406518|ref|XP_003882708.1| Rhomboid family protein, related [Neospora caninum Liverpool]
gi|325117124|emb|CBZ52676.1| Rhomboid family protein, related [Neospora caninum Liverpool]
Length = 283
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 16/153 (10%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
++GA I ELI +G+ WRL+ P+FLH LFH+ ++ W G + + YG Y
Sbjct: 96 MFGANIPELIRIGQVWRLICPLFLHLNLFHILMNLWVQSRVGLTMEEKYGSKKLLATYFG 155
Query: 319 GGISGNLTS--FLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
GI N+ S L + G + VFA+IG Q LI + +R AILS
Sbjct: 156 VGILANMISAAVLFCGQMKAGASTAVFALIGV----QLAELALIWHALQDR--NSAILSV 209
Query: 377 ALS----FIISNFGPVDTWAHLGAAFTGIIYGF 405
+ F+ S G D HLG G++ GF
Sbjct: 210 CICLFFVFVSSFGGHTDGIGHLG----GLVMGF 238
>gi|229009739|ref|ZP_04166962.1| Rhomboid [Bacillus mycoides DSM 2048]
gi|228751534|gb|EEM01337.1| Rhomboid [Bacillus mycoides DSM 2048]
Length = 182
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 249 SEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYG 308
S+F F L A NE I GEWWR++T + +H L H + L FG + K G
Sbjct: 28 SDFSLFHL-----AAYNEYIAKGEWWRVITSLLVHVDLQHFLSNSICLFVFGSSIEKQLG 82
Query: 309 PFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
F+F +I+ L GI GN++S++ P + G +G +F ++GA L
Sbjct: 83 HFSFIIIFFLSGILGNISSYIIMPLEYIHAGASGGIFGLLGAQL 126
>gi|374340237|ref|YP_005096973.1| hypothetical protein Marpi_1272 [Marinitoga piezophila KA3]
gi|372101771|gb|AEX85675.1| putative membrane protein [Marinitoga piezophila KA3]
Length = 235
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 78/151 (51%), Gaps = 7/151 (4%)
Query: 261 GAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA+ +LI + +++R +T +F+H G+ H++ + +AL G V + YGP+ F IY
Sbjct: 48 GAQYGKLITIYHQYFRFITALFVHGGILHISFNLYALYYLGNIVERVYGPYKFLTIYLAS 107
Query: 320 GISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKD--LIAKDVSERMFQKAILST 376
GI G + + + P +VG +G +F +IG F++ ++ + +++
Sbjct: 108 GIGGGILTQIFIPNAFSVGASGAIFGLIGLLFGAGFRDDTPPMLKPMTGTALLPVILINL 167
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
L F S ++ +AH+G G +G+LT
Sbjct: 168 FLGFTSSG---INNFAHIGGLLVGFTFGWLT 195
>gi|418695529|ref|ZP_13256548.1| peptidase, S54 family [Leptospira kirschneri str. H1]
gi|409956614|gb|EKO15536.1| peptidase, S54 family [Leptospira kirschneri str. H1]
Length = 514
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 16/163 (9%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L +GA L G+WWRL+T +F+H+ H+ + + L+ V G F ++Y
Sbjct: 359 LEWGANRRIETLAGQWWRLLTNVFVHASFPHLFFNGFGLIISAIFVEPILGRIRFLILYI 418
Query: 318 LGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L
Sbjct: 419 FSGLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFLRDDKKNVLIM 471
Query: 377 ALSFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
++FI++ FG +D +H+G G I G + L Q G
Sbjct: 472 IVTFILTGLLWGLFGGIDNASHIGGLVGGTILGII---LFQFG 511
>gi|309803097|ref|ZP_07697194.1| peptidase, S54 family [Lactobacillus iners LactinV 11V1-d]
gi|309806110|ref|ZP_07700129.1| peptidase, S54 family [Lactobacillus iners LactinV 03V1-b]
gi|329920170|ref|ZP_08277001.1| peptidase, S54 family [Lactobacillus iners SPIN 1401G]
gi|349611504|ref|ZP_08890739.1| hypothetical protein HMPREF1027_00166 [Lactobacillus sp. 7_1_47FAA]
gi|308164605|gb|EFO66855.1| peptidase, S54 family [Lactobacillus iners LactinV 11V1-d]
gi|308167465|gb|EFO69625.1| peptidase, S54 family [Lactobacillus iners LactinV 03V1-b]
gi|328936624|gb|EGG33068.1| peptidase, S54 family [Lactobacillus iners SPIN 1401G]
gi|348608597|gb|EGY58577.1| hypothetical protein HMPREF1027_00166 [Lactobacillus sp. 7_1_47FAA]
Length = 232
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
++WRL T F+H+G FH+ + + FG + + G + IY L G+ GNL SF
Sbjct: 61 QFWRLFTAQFIHAGFFHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGNLLSFALG 120
Query: 332 PEPTV--GGTGPVFAIIGAWL-IYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP- 387
+ + G + VF ++G+ L +Y N ++IA + + F I + + F F P
Sbjct: 121 QDNVISCGASTAVFGLMGSVLALYFLNNDNIIAVIIGRQAFLLLICNIVVDF----FMPS 176
Query: 388 VDTWAHLGAAFTG 400
VD H+G TG
Sbjct: 177 VDIIGHIGGTITG 189
>gi|297740363|emb|CBI30545.3| unnamed protein product [Vitis vinifera]
Length = 320
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL+T ++LH G+FH+ + +LL G ++ + +G L+Y + G G+L S L E
Sbjct: 62 WRLITCIWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKVGLLYVISGFGGSLLSGLFIQE 121
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++G L N + A ++ F ++ A++ + VD +A
Sbjct: 122 NISVGASGALFGLLGGMLSELITNWSIYANKLAA--FLTLVIIIAINLAVGILPHVDNFA 179
Query: 393 HLGAAFTGIIYGFLTCPLVQLGDASSRNSQEE 424
H+G +G + GF+ Q G S + E
Sbjct: 180 HIGGFLSGFLLGFVFLIRPQFGWVSQIYASPE 211
>gi|219109878|ref|XP_002176692.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411227|gb|EEC51155.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 669
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 15/157 (9%)
Query: 261 GAKINELIL-VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GAK + LI+ GE WRL+T LH+GL H ++ AL G + S+G + +I++
Sbjct: 376 GAKDSYLIVHAGEGWRLLTSTILHAGLVHYFINMLALWFVGGAIEMSHGWISAMIIFSSS 435
Query: 320 GISGNLTSFLHTPE-PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA------ 372
I G + S + PE TVG +G +F IGA L N L+ + + +K
Sbjct: 436 AIGGIILSAIFLPEFITVGASGGIFGFIGACLADIIMNWKLLFDGLLDENGKKHQHTMVV 495
Query: 373 ---ILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
+ AL+ II VD + HLG G+ YGFL
Sbjct: 496 VVLLFDIALNSIIGLTPYVDNFTHLG----GMAYGFL 528
>gi|354580522|ref|ZP_08999427.1| Rhomboid family protein [Paenibacillus lactis 154]
gi|353202953|gb|EHB68402.1| Rhomboid family protein [Paenibacillus lactis 154]
Length = 204
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGA + GE WR VT MFLH+G H+ + +ALL F P + + G + F L+Y L
Sbjct: 48 YGALTDLPQFTGEPWRYVTAMFLHNGFDHLLFNSFALLVFVPPLERIMGSWKFGLLYLLS 107
Query: 320 GISGNLTSF-----LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAIL 374
GI GN+ + + E VG +G ++ GA+L + ++ +F IL
Sbjct: 108 GILGNVIALAYYGRMEGYETLVGASGAIYGAYGAYLYIALFQRHVMDMASRRTLFTLLIL 167
Query: 375 STALSF-----IISNFG 386
LSF ++++FG
Sbjct: 168 GIVLSFTPGISLVAHFG 184
>gi|153005609|ref|YP_001379934.1| rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
gi|152029182|gb|ABS26950.1| Rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
Length = 369
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA + GE WRLVT FLH G H+A++ ALL GP V + GP F +Y
Sbjct: 55 GALERSRVWAGEPWRLVTAGFLHGGWHHLAMNLGALLLAGPIVERGLGPARFLGLYLASV 114
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 380
+ + S L G +G VF ++GA L+ + ++ + V+ + + A F
Sbjct: 115 VGASAASLLAHDAVVAGASGGVFGVVGALLVLELRHAGSARRFVAAPHTIAVLGALAAGF 174
Query: 381 IISNFGPV 388
+ S P
Sbjct: 175 LASRLFPA 182
>gi|344997584|ref|YP_004799927.1| rhomboid family protein [Caldicellulosiruptor lactoaceticus 6A]
gi|343965803|gb|AEM74950.1| Rhomboid family protein [Caldicellulosiruptor lactoaceticus 6A]
Length = 242
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 36/231 (15%)
Query: 230 LVSIDVAVFLFEIASPIRNSE-----FGF----FSLPLLYGAKINELILVGEWWRLVTPM 280
L+ I+V VFL++++ P ++ +GF F+ L +G + + + W ++T M
Sbjct: 20 LILINVFVFLYQVSMPQEAAQEFVFRYGFVPERFTQLLSHGFVVAASVSI---WSIITSM 76
Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL---HTPEPTVG 337
FLH H+ + W+L FG V G F F + Y L G + LT + ++P PTVG
Sbjct: 77 FLHGSWMHLISNMWSLWLFGDNVEDRVGHFRFLIFYILSGFAAALTHWFFNANSPIPTVG 136
Query: 338 GTGPVFAIIGAWLIYQFQNKDLIAK----------DVSERMFQKA-ILSTALSFIISNFG 386
+G + ++GA+ + F ++ ++ F LS S I+ FG
Sbjct: 137 ASGAISGVMGAYFL-MFPLSRIVTLIPLGFIPLFIEIPAIFFLGIWFLSQVSSGILELFG 195
Query: 387 PV-----DTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQY 432
PV WAH+G G ++G LT + + RN ++ I R +
Sbjct: 196 PVFGSGIAWWAHIG----GFVFGVLTINMFKKKYRRYRNFFDDEIFYYRYF 242
>gi|224074883|ref|XP_002304474.1| predicted protein [Populus trichocarpa]
gi|222841906|gb|EEE79453.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 265 NELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN 324
N+++ + WRL+T M+LH+G+ HV + +L+ G ++ + +G +IY + G G+
Sbjct: 102 NKVVHGHQGWRLITCMWLHAGVVHVLANMLSLIFIGIRLEQQFGFVRVGIIYLVSGFGGS 161
Query: 325 LTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIS 383
+ S L + +VG +G +F ++GA L N + + ++ + I+ A++ +
Sbjct: 162 ILSSLFIQQNISVGASGALFGLLGAMLSELLTNWTIYSNKIAALLTLVVII--AINLAVG 219
Query: 384 NFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEE 424
VD +AH+G +G + GF+ Q G A +R+S +
Sbjct: 220 ILPHVDNFAHIGGFMSGFLLGFVFLLRPQFGWAENRHSPAD 260
>gi|154505636|ref|ZP_02042374.1| hypothetical protein RUMGNA_03175 [Ruminococcus gnavus ATCC 29149]
gi|336431736|ref|ZP_08611578.1| hypothetical protein HMPREF0991_00697 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153794075|gb|EDN76495.1| putative rhomboid protease GluP [Ruminococcus gnavus ATCC 29149]
gi|336019755|gb|EGN49477.1| hypothetical protein HMPREF0991_00697 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 200
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILV-GEWWRLVTPMFLHSGLFH 288
L+ I++ +F + S + N E F + YGA LI +++RL+T +FLH G+ H
Sbjct: 13 LIVINMGIFF--LLSFLGNPENAVFMIK--YGAMYPPLIFEDAQYYRLITCIFLHFGIDH 68
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF---LHTPEPTV--GGTGPVF 343
+ + L G + K G F F LIY + GI NL S +T V G +G +F
Sbjct: 69 LMNNMVMLGALGWNLEKEIGSFKFLLIYFVSGIGANLISLAMDFYTGNLAVSAGASGAIF 128
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
++GA L +N+ + M +LS F + VD AH+G G+I
Sbjct: 129 GLLGALLWVVIRNRGKAGRLTGRGMLFMVLLSLYFGFTSTG---VDNAAHVG----GLIC 181
Query: 404 GFLTCPLVQLGDASSR 419
GFLT L+ G R
Sbjct: 182 GFLTAVLLYHGRNVPR 197
>gi|124359588|gb|ABD28718.2| Protein secE/sec61-gamma protein; Rhomboid-like protein [Medicago
truncatula]
Length = 324
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
E WR +T MFLH+G+ H+ + ++LL G ++ +G ++Y L G G+L S LH
Sbjct: 108 EVWRFITCMFLHAGVIHLLANMFSLLFIGVRLENEFGFLKIGVLYLLSGFGGSLLSILHM 167
Query: 332 PE------PTVGGTGPVFAIIGA--------WLIYQFQNKDLIAKDVSERMFQKAILSTA 377
+ +VG +G +F ++GA W IY NK V + +L
Sbjct: 168 GDVKAPNTVSVGASGALFGLLGAMLSELLTNWTIY--LNKGEKPLTVQFKALTSLLLIIG 225
Query: 378 LSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSR 419
L+ + VD AH+G +G GF+ Q G +++
Sbjct: 226 LNLAVGFIPHVDNSAHIGGFLSGFFLGFVILMRPQFGYVNNK 267
>gi|423577912|ref|ZP_17554031.1| hypothetical protein II9_05133 [Bacillus cereus MSX-D12]
gi|423607939|ref|ZP_17583832.1| hypothetical protein IIK_04520 [Bacillus cereus VD102]
gi|401203958|gb|EJR10789.1| hypothetical protein II9_05133 [Bacillus cereus MSX-D12]
gi|401239513|gb|EJR45940.1| hypothetical protein IIK_04520 [Bacillus cereus VD102]
Length = 190
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
FF P+ A NE I GEWWRL+T + +H L H + L G + K G F+F
Sbjct: 30 FFLFPM---AASNEYIAKGEWWRLITSLLVHVDLPHFLSNSICLFVLGSSIEKQLGHFSF 86
Query: 313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQF-QNKDLIAKDVSERMF 369
+I+ L GI GN+ S+L P + G +G +F ++GA L + + + +D++
Sbjct: 87 IIIFFLSGILGNIFSYLIMPHEYIHTGASGGIFGLLGAQLFLMYSRYRSSNPRDIAIFSI 146
Query: 370 QKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
IL + + F P + +HL TG+I G + PL+
Sbjct: 147 MICIL-----LLFTFFNPSANPISHL----TGLIIGGICTPLL 180
>gi|332686104|ref|YP_004455878.1| GlpG protein [Melissococcus plutonius ATCC 35311]
gi|332370113|dbj|BAK21069.1| GlpG protein, membrane protein of glp regulon [Melissococcus
plutonius ATCC 35311]
Length = 234
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 11/143 (7%)
Query: 230 LVSIDVAVFL-FEIASPIRNSEFGFFSLPLLYGAKINELILVG-EWWRLVTPMFLHSGLF 287
L+ I V +FL E + NS + + +GA + IL+ E+WRL TP+FLH G
Sbjct: 20 LIGITVIIFLAMEFSGGSENSR-----VLIQFGALVRPYILINKEYWRLFTPIFLHIGWM 74
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAI 345
H+ L+ L G Q+ + YG + + IY L GI+GN+ SF ++ G + +F +
Sbjct: 75 HLILNMVTLYYIGEQIERIYGHWRYLGIYLLSGIAGNVLSFSFGSLNSISAGASTALFGL 134
Query: 346 IGAWLIY--QFQNKDLIAKDVSE 366
GA++I F+N I + V +
Sbjct: 135 FGAFVILGKHFKNNPAILEMVRQ 157
>gi|15672152|ref|NP_266326.1| hypothetical protein L173329 [Lactococcus lactis subsp. lactis
Il1403]
gi|281490657|ref|YP_003352637.1| rhomboid family intramembrane serine protease [Lactococcus lactis
subsp. lactis KF147]
gi|385829737|ref|YP_005867550.1| intramembrane serine protease, rhomboid family [Lactococcus lactis
subsp. lactis CV56]
gi|418037070|ref|ZP_12675459.1| Serine endopeptidase [Lactococcus lactis subsp. cremoris CNCM
I-1631]
gi|12723021|gb|AAK04268.1|AE006254_9 hypothetical protein L173329 [Lactococcus lactis subsp. lactis
Il1403]
gi|281374426|gb|ADA63947.1| Intramembrane serine protease, rhomboid family [Lactococcus lactis
subsp. lactis KF147]
gi|326405745|gb|ADZ62816.1| intramembrane serine protease, rhomboid family [Lactococcus lactis
subsp. lactis CV56]
gi|354694949|gb|EHE94577.1| Serine endopeptidase [Lactococcus lactis subsp. cremoris CNCM
I-1631]
gi|374672245|dbj|BAL50136.1| hypothetical protein lilo_0134 [Lactococcus lactis subsp. lactis
IO-1]
Length = 230
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 261 GAKINELILV--GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
GA + +++L + WRL T +F+H G HV L+ L G Q+ +G F LIY L
Sbjct: 48 GAILGQVMLFDPSQMWRLFTALFIHIGWAHVLLNVATLFFIGRQIENVFGWLRFTLIYLL 107
Query: 319 GGISGNLTSFLHTPE-PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
GI GN FL TP + G + +F + A + F K + + RMF I++
Sbjct: 108 SGIFGNAMVFLLTPRVVSAGASTSIFGLFAAVVGLAFFTKHPFLQQIG-RMFTVLIVANL 166
Query: 378 LSFIISNFGPVDTWAHLGAAFTGIIYGFLTCP 409
+ + S G V WAH+G A G++ + P
Sbjct: 167 VMNLFS-LGNVSIWAHIGGAIGGLLLSAIFAP 197
>gi|256389276|ref|YP_003110840.1| rhomboid family protein [Catenulispora acidiphila DSM 44928]
gi|256355502|gb|ACU68999.1| Rhomboid family protein [Catenulispora acidiphila DSM 44928]
Length = 356
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-L 329
GEW+RLVT MFLH+ L H+A + +L GP + G F L+Y +GG++G +TS+
Sbjct: 141 GEWYRLVTSMFLHANLIHIASNMISLFFIGPMLEAMLGRLRFVLVYLIGGLAGAVTSYWF 200
Query: 330 HTP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP 387
TP ++G +G + A+ G ++ + K L ++ + +++ + +N
Sbjct: 201 MTPLSPASLGASGAISAVFGCLVVIGLRRKILDPGMIAVVL----VINIVIPLQNTN--- 253
Query: 388 VDTWAHLG----AAFTGIIYGFLTCPLVQLGDASSRNSQE 423
+D H+G A G +Y F + LG A + Q+
Sbjct: 254 IDWRDHVGGVVAGALIGAVYAFAPELIGALGKARAPREQQ 293
>gi|295425277|ref|ZP_06817980.1| rhomboid protease GluP [Lactobacillus amylolyticus DSM 11664]
gi|295065053|gb|EFG55958.1| rhomboid protease GluP [Lactobacillus amylolyticus DSM 11664]
Length = 226
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 261 GAKINELILVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA N ++ G +WWRL+T FLH G++H+ + + G + G + F LIY L
Sbjct: 43 GAMNNYAVVAGHQWWRLITAQFLHIGIWHLVSNIVMIYYMGLIIEPMLGHWRFLLIYLLS 102
Query: 320 GISGNLTSFLHTPEPTVGGTG--PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
G+ GNL S + ++G +F + GA + +++ A V + ++A++
Sbjct: 103 GVGGNLLSLAFGSDKSIGAGASTALFGLFGAVIALGIRHR---ANPVVAYVGRQALVLAV 159
Query: 378 LSFIISNFGP-VDTWAHLGAAFTGIIYGFL 406
L+ II F P +D + H+G G+I GFL
Sbjct: 160 LNLIIDIFLPNIDIYGHIG----GLISGFL 185
>gi|334135017|ref|ZP_08508518.1| peptidase, S54 family [Paenibacillus sp. HGF7]
gi|333607519|gb|EGL18832.1| peptidase, S54 family [Paenibacillus sp. HGF7]
Length = 204
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
YGA + V EWWR T MFLH GL H+ + +AL+ F P + + G + + Y
Sbjct: 48 YGALFSAPGFVPEWWRFFTAMFLHIGLSHLLFNSFALVIFAPPLERLLGSVRYAVFYLAS 107
Query: 320 GISGNLTSF-LHT-PEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
G G+ S+ LHT G +G ++ I A+L + L+ + + + +
Sbjct: 108 GALGSAFSYWLHTDAYVAAGASGAIYGIYAAYLYLALFRRQLLDQQSRQTVIIILVSGLL 167
Query: 378 LSFIISNFGPVDTWAHLGAAFTGII 402
S I+ N VD + HLG G I
Sbjct: 168 FSVIVPN---VDLYTHLGGFLAGFI 189
>gi|66475270|ref|XP_627451.1| conserved protein with 6 transmembrane domain [Cryptosporidium
parvum Iowa II]
gi|46228919|gb|EAK89768.1| conserved protein with 6 transmembrane domain [Cryptosporidium
parvum Iowa II]
Length = 990
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 255 SLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFL 314
+L L G +NEL GE R+ M++H+G H+ + + G + +G FFL
Sbjct: 618 TLSALGGLVVNEL-RQGEMIRMFWAMWMHTGFIHIGFNVISQAQLGYMIEPDWGILRFFL 676
Query: 315 IYTLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
++ L G+ GNL + +P TVG +G +F I A + Y F+N + + + MF ++
Sbjct: 677 LFFLSGVGGNLAVAVISPCSLTVGSSGGLFGITAASIPYTFENWNNLPAPMF--MFIFSL 734
Query: 374 LSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
S + I+S G + WAH+G GI+Y F T
Sbjct: 735 FSLIIGMILSFTGVTNPWAHIGGFVVGILYTFAT 768
>gi|253573307|ref|ZP_04850650.1| rhomboid family protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251846835|gb|EES74840.1| rhomboid family protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 204
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--- 327
G+ WRL T MFLH+G H+ + +A+L F P + + G + + L+Y G+ GNL S
Sbjct: 59 GQSWRLFTAMFLHNGFDHLFSNSFAILVFAPPLERLLGWWRYALVYLGSGLVGNLISMGV 118
Query: 328 --FLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF 385
F P +VG +G V+ + GA+L + L+ + + ++ I+ S ++
Sbjct: 119 YQFSSVPHISVGASGAVYGVYGAFLYIALLQRHLMDESSRKTLYSLLIIGVIYSVLVPKI 178
Query: 386 GPVDTWAHLGAAFTGIIYGFLTCPLV 411
+L A F G++ GF L+
Sbjct: 179 -------NLAAHFGGLVGGFFIYGLI 197
>gi|229171084|ref|ZP_04298682.1| Rhomboid [Bacillus cereus MM3]
gi|228612414|gb|EEK69638.1| Rhomboid [Bacillus cereus MM3]
Length = 156
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
A NE I GEWWRL+T + +H L H + L G + K G F+F +I+ L GI
Sbjct: 2 ASYNEYIAKGEWWRLITSLLVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGI 61
Query: 322 SGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
GN++S+L P + G +G +F ++GA L
Sbjct: 62 LGNISSYLIMPLEYIHAGASGGIFGLLGAQL 92
>gi|314933721|ref|ZP_07841086.1| rhomboid family protein [Staphylococcus caprae C87]
gi|313653871|gb|EFS17628.1| rhomboid family protein [Staphylococcus caprae C87]
Length = 487
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+RL++ MFLH H+ ++ +L FG V G + +IY + G
Sbjct: 190 GGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSLFIFGKIVESIVGSWRMLVIYFVSG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL
Sbjct: 250 LFGNFVSLSFNTSTISVGASGAIFGLIGSIFAIMYLSKTFDRKVIGQLLIALLILICLSL 309
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
F+ ++ AHLG G++
Sbjct: 310 FM----SNINIMAHLGGFIGGLL 328
>gi|304403852|ref|ZP_07385514.1| Rhomboid family protein [Paenibacillus curdlanolyticus YK9]
gi|304346830|gb|EFM12662.1| Rhomboid family protein [Paenibacillus curdlanolyticus YK9]
Length = 204
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FL 329
E WR VT +FLH+G H+ + +L+ F P + + G + L + + G+ GNL S F
Sbjct: 63 EPWRYVTAIFLHAGFMHLFYNLISLIIFAPPLERLLGHVRYGLFFIVTGVVGNLFSALFH 122
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
H +VG +G ++ + GA+L K + + + ++ I SF++ ++
Sbjct: 123 HGEVLSVGASGAIYGVYGAFLFLSVFGKHRLDEGSRKTVYSILIFGLIYSFLVPT---IN 179
Query: 390 TWAHLGAAFTG-IIYG 404
WAH+G G ++YG
Sbjct: 180 IWAHVGGGIAGFVLYG 195
>gi|347520690|ref|YP_004778261.1| hypothetical protein LCGT_0084 [Lactococcus garvieae ATCC 49156]
gi|385832053|ref|YP_005869828.1| hypothetical protein [Lactococcus garvieae Lg2]
gi|343179258|dbj|BAK57597.1| conserved hypothetical protein [Lactococcus garvieae ATCC 49156]
gi|343181206|dbj|BAK59544.1| conserved hypothetical protein [Lactococcus garvieae Lg2]
Length = 230
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+ WRLVTP+F+H G H ++ L G QV +G F LIY L GI GN +F+ +
Sbjct: 61 QLWRLVTPIFIHIGWTHFLMNTLTLFFIGRQVEAVFGSLNFSLIYILSGIFGNAATFIFS 120
Query: 332 PEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P + G + +F + A F + K + + +++ L F + N V+
Sbjct: 121 PNSLSAGASTSIFGLFAAIAGIGFFTGHPMLKQIGKTF--TILIAINLFFNMFNLSSVNI 178
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQY 432
W+H+G A G++ + P +N G+T++ +
Sbjct: 179 WSHVGGAVGGLLLAPVFPPKYFKNSVPMQNRILSGVTVVVLF 220
>gi|50426743|ref|XP_461969.1| DEHA2G09724p [Debaryomyces hansenii CBS767]
gi|49657639|emb|CAG90439.1| DEHA2G09724p [Debaryomyces hansenii CBS767]
Length = 610
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 9/173 (5%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+W+R++TPMFLH+G H+ + +T G + +S G + +IY + GISG L +
Sbjct: 288 QWYRVITPMFLHAGFLHILFNLLLQVTMGASIERSIGFIKYAIIYLMCGISGFLLGANFS 347
Query: 332 PE--PTVGGTGPVFAIIGAWLIYQF----QNKDLIAKDVSERMFQKAILSTALSFIISNF 385
P + G +G +F ++ +I +N ++ I+ +S ++
Sbjct: 348 PNGIASTGASGALFGVVATNIIMFVYCGKKNTNIYGTKKYGLFIFIMIMEIVISLVLGLL 407
Query: 386 GPVDTWAHLGAAFTGIIYGFLTCP---LVQLGDASSRNSQEEGITLIRQYANP 435
+D ++H+G GI+ L P LV + + +++++ + R NP
Sbjct: 408 PGMDNFSHIGGFAMGILMAILLLPDPFLVYVDGIITYHARDDTMQQFRNNWNP 460
>gi|396485661|ref|XP_003842225.1| similar to rhomboid family membrane protein [Leptosphaeria maculans
JN3]
gi|312218801|emb|CBX98746.1| similar to rhomboid family membrane protein [Leptosphaeria maculans
JN3]
Length = 549
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+WWR + P+FLH+GL H+ + LT G + K GP F L+Y GI G + +
Sbjct: 271 QWWRFIVPIFLHAGLIHIGFNMLLQLTLGRDMEKEIGPLRFTLVYFAAGIFGFVLGGNYA 330
Query: 332 PE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
+ +VG +G +F I+ L+ N V + +F +L A++F++ +D
Sbjct: 331 ADGLASVGASGSLFGILALTLLDLLYNWSTRRSPVKDLLF--LLLDVAIAFVLGLLPGLD 388
Query: 390 TWAHLGAAFTGIIYG 404
++H+G G++ G
Sbjct: 389 NFSHIGGFLMGLVLG 403
>gi|298706194|emb|CBJ29235.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 256
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 4/140 (2%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEW+RLVT + LH G H+A + AL G G F +Y G+SGN+ S +
Sbjct: 115 GEWYRLVTAVMLHGGWGHLAGNSMALFNIGRGTETYMGTEKFVALYVCSGVSGNVLSCIV 174
Query: 331 TP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
P P++G +G +F ++GA + + Q A + + ++ N +D
Sbjct: 175 DPLTPSLGASGAIFGLLGAEAMIHLAGPKASMPLFVSSVGQTAFFAVLVGLLVPN---ID 231
Query: 390 TWAHLGAAFTGIIYGFLTCP 409
W HLG G L P
Sbjct: 232 HWGHLGGFVGGAALTLLIQP 251
>gi|67608816|ref|XP_666907.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657985|gb|EAL36682.1| hypothetical protein Chro.60098 [Cryptosporidium hominis]
Length = 985
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 255 SLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFL 314
+L L G +NEL GE R+ M++H+G H+ + + G + +G FFL
Sbjct: 613 TLSALGGLVVNEL-RQGEMIRMFWAMWMHTGFIHIGFNVISQAQLGYMIEPDWGILRFFL 671
Query: 315 IYTLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
++ L G+ GNL + +P TVG +G +F I A + Y F+N + + + MF ++
Sbjct: 672 LFFLSGVGGNLAVAVISPCSLTVGSSGGLFGITAASIPYTFENWNNLPAPMF--MFIFSL 729
Query: 374 LSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
S + I+S G + WAH+G GI+Y F T
Sbjct: 730 FSLIIGMILSFTGVTNPWAHIGGFVVGILYTFAT 763
>gi|153811275|ref|ZP_01963943.1| hypothetical protein RUMOBE_01667 [Ruminococcus obeum ATCC 29174]
gi|149832773|gb|EDM87857.1| peptidase, S54 family [Ruminococcus obeum ATCC 29174]
Length = 163
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 10/136 (7%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-- 328
GE++RL T MFLH G+ H+ + L G ++ + G F LIY +GG+ GN+ S
Sbjct: 18 GEYYRLFTCMFLHFGIEHLLNNMLVLFVLGSRLEQVIGKIKFLLIYLIGGVFGNVISLLI 77
Query: 329 -LHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST-ALSFIISN 384
L T + V G +G VFA++GA + +NK + D+S R Q +++ +L F ++
Sbjct: 78 ELRTQDFAVSAGASGAVFAVMGAMIYIVIRNKGWLG-DLSMR--QILVMAAFSLYFGFAS 134
Query: 385 FGPVDTWAHLGAAFTG 400
G VD AH+G +G
Sbjct: 135 TG-VDNTAHVGGMVSG 149
>gi|312794672|ref|YP_004027595.1| rhomboid family protein [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312181812|gb|ADQ41982.1| Rhomboid family protein [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 242
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 34/230 (14%)
Query: 230 LVSIDVAVFLFEIASPIRNSE-----FGF----FSLPLLYGAKINELILVGEWWRLVTPM 280
L+ I+V VFL++++ P ++ +GF F+ L +G + + + W ++T M
Sbjct: 20 LILINVFVFLYQVSMPQEAAQEFVFRYGFVPERFTQLLSHGFVVAASVSI---WSIITSM 76
Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL---HTPEPTVG 337
FLH H+ + W+L FG V G F F + Y L GI+ LT + ++P PTVG
Sbjct: 77 FLHGSWMHLISNMWSLWLFGDNVEDRVGHFRFLIFYILSGIAAALTHWFFNANSPIPTVG 136
Query: 338 GTGPVFAIIGAWLIYQFQNKDL---------IAKDVSERMFQKA-ILSTALSFIISNFGP 387
+G + ++GA+ + ++ + I ++ F LS S I+ FGP
Sbjct: 137 ASGAISGVMGAYFLMFPLSRIVTLIPLGFIPIFIEIPAIFFLGIWFLSQVSSGILELFGP 196
Query: 388 V-----DTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQY 432
V WAH+G G ++G LT + + N ++ I R +
Sbjct: 197 VFGSGIAWWAHIG----GFVFGVLTINMFKKRYRRYHNFFDDEIFYYRYF 242
>gi|153853648|ref|ZP_01995028.1| hypothetical protein DORLON_01019 [Dorea longicatena DSM 13814]
gi|149753803|gb|EDM63734.1| peptidase, S54 family [Dorea longicatena DSM 13814]
Length = 204
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 13/184 (7%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAK-INELILVGEWWRLVTPMFLHSGLF 287
+L +++V VFL + S + +E G F L +GA + LI GE++RL + MFLH G
Sbjct: 13 LLAAVNVIVFL--VLSFLGMTEDGEFMLK--HGAMYVPYLIQRGEYYRLFSSMFLHFGYD 68
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF---LHTPEPTV--GGTGPV 342
H+ + L+ G + G F ++Y + G++GN+ S + T + G +G +
Sbjct: 69 HLVNNMIVLVAMGWNLELDIGKVKFLIVYFVSGLAGNVLSAWWDIQTGSMAISAGASGAI 128
Query: 343 FAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
F IIGA L +N+ I D+S R I+ T S G VD AH+G G +
Sbjct: 129 FGIIGALLYVAIRNRGRIG-DISGRGLVFMIVLTLYYGFTS--GGVDNMAHIGGLLAGFL 185
Query: 403 YGFL 406
G L
Sbjct: 186 SGVL 189
>gi|402074200|gb|EJT69729.1| rhomboid family membrane protein [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 587
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT--SFL 329
+W+R +TP+F+H+GL H+ + LT G + S G FFL+Y GI G + +F
Sbjct: 322 QWFRFITPIFMHAGLIHIGFNLLLQLTIGRDMEMSIGTLRFFLVYMSAGIFGFVMGGNFA 381
Query: 330 HTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
T + G +G +F II L+Y ++++ KD+ +F L A+SF++
Sbjct: 382 ATGIASTGASGSLFGIIALTLLDLLYSWKDRKNPTKDL---LF--IFLDVAISFVLGLLP 436
Query: 387 PVDTWAHLGAAFTGIIYG 404
+D ++H+G G+ G
Sbjct: 437 GLDNFSHIGGFLMGLALG 454
>gi|423405049|ref|ZP_17382222.1| hypothetical protein ICW_05447 [Bacillus cereus BAG2X1-2]
gi|423479886|ref|ZP_17456600.1| hypothetical protein IEO_05343 [Bacillus cereus BAG6X1-1]
gi|401645692|gb|EJS63342.1| hypothetical protein ICW_05447 [Bacillus cereus BAG2X1-2]
gi|402424278|gb|EJV56464.1| hypothetical protein IEO_05343 [Bacillus cereus BAG6X1-1]
Length = 190
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 17/156 (10%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
A NE I GEWWRL+T + +H L H + L G + K G F+F +I+ L GI
Sbjct: 36 ASYNEYIAKGEWWRLITSLLVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGI 95
Query: 322 SGNLTSFLHTPEPTV--GGTGPVFAIIGA--WLIY-QFQNKDLIAKDVSERMFQKAILST 376
GN++S+L P + G +G +F ++GA +L+Y ++++ + +D++ IL
Sbjct: 96 LGNISSYLIMPLEYIHAGASGGIFGLLGAQLFLLYSRYRSSN--PRDIAIFSIMICIL-- 151
Query: 377 ALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLV 411
+ + F P + +HL TG+I G + PL+
Sbjct: 152 ---LLFTFFNPSANPISHL----TGLIIGGICTPLL 180
>gi|223043140|ref|ZP_03613187.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|417907800|ref|ZP_12551567.1| peptidase, S54 family [Staphylococcus capitis VCU116]
gi|222443351|gb|EEE49449.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|341594887|gb|EGS37565.1| peptidase, S54 family [Staphylococcus capitis VCU116]
Length = 487
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+RL++ MFLH H+ ++ +L FG V G + +IY + G
Sbjct: 190 GGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSLFIFGKIVESIVGSWRMLVIYFVSG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GN S +T +VG +G +F +IG+ + +K K + + + IL
Sbjct: 250 LFGNFVSLSFNTSTISVGASGAIFGLIGSIFAIMYLSKTFDRKVIGQLLIALLILICLSL 309
Query: 380 FIISNFGPVDTWAHLGAAFTGII 402
F+ ++ AHLG G++
Sbjct: 310 FM----SNINIMAHLGGFIGGLL 328
>gi|420143494|ref|ZP_14650991.1| Hypothetical protein Y7C_88798 [Lactococcus garvieae IPLA 31405]
gi|391856365|gb|EIT66905.1| Hypothetical protein Y7C_88798 [Lactococcus garvieae IPLA 31405]
Length = 230
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+ WRLVTP+F+H G H ++ L G QV +G F LIY L GI GN +F+ +
Sbjct: 61 QLWRLVTPIFIHIGWTHFLMNTLTLFFIGRQVEAVFGSLNFSLIYILSGIFGNAATFIFS 120
Query: 332 PEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P + G + +F + A F + K + + +++ L F + N V+
Sbjct: 121 PNSLSAGASTSIFGLFAAIAGIGFFTGHPMLKQIGKTF--TILIAINLFFNMFNLSSVNI 178
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQY 432
W+H+G A G++ + P +N G+T++ +
Sbjct: 179 WSHVGGAVGGLLLAPVFPPKYFKNSIPMQNRILSGVTIVVLF 220
>gi|116748348|ref|YP_845035.1| rhomboid family protein [Syntrophobacter fumaroxidans MPOB]
gi|116697412|gb|ABK16600.1| Rhomboid family protein [Syntrophobacter fumaroxidans MPOB]
Length = 284
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 13/190 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
WW L++ +LH + H+ + A P + YG IYTL GI G + S+
Sbjct: 108 RWWTLLSASYLHGSILHILFNMMAFSQIAPLIVHEYGASRTLAIYTLSGIGGYVLSYFAG 167
Query: 332 PEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
T+G + V +IGA L Y + V ++ I F+ F +D W
Sbjct: 168 TAVTLGASAAVCGLIGAALYYGRSRGGQFGQLVYRQVSGWVIGLFIFGFL---FPGIDNW 224
Query: 392 AHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGS 451
AH G TGI+ GF+ + Q E + L + N C T+ + S
Sbjct: 225 AHGGGLLTGILAGFVL---------GYQERQPERL-LHKTVGNLCVIATALTLVYAVGTS 274
Query: 452 FIFVFEPPLD 461
F+ +F L
Sbjct: 275 FLIIFRVGLG 284
>gi|134112822|ref|XP_774954.1| hypothetical protein CNBF1190 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257602|gb|EAL20307.1| hypothetical protein CNBF1190 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 532
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 13/147 (8%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFL 329
+WWR + P+FLH G+ H+ ++ + QV + G F ++Y LGGI G + +F
Sbjct: 314 QWWRFILPIFLHVGIIHLIVNMLVQIIVSAQVEREMGTIPFLIVYMLGGIYGFVLGGNFT 373
Query: 330 HTPEPTVGGTGPVFA-----IIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN 384
T P+VG +G +FA ++ L ++++ + K + +F + ++ A+ +I +
Sbjct: 374 RTGIPSVGASGALFATNACVLVDLVLHWKYEER---PKLKAFLLFLEFVIGFAMGYIPNA 430
Query: 385 FGPVDTWAHLGAAFTGIIYGFLTCPLV 411
VD AHLG GI+ G + P +
Sbjct: 431 ---VDGLAHLGGWAMGILCGTILYPAI 454
>gi|56418762|ref|YP_146080.1| hypothetical protein GK0227 [Geobacillus kaustophilus HTA426]
gi|297528578|ref|YP_003669853.1| rhomboid family protein [Geobacillus sp. C56-T3]
gi|448236524|ref|YP_007400582.1| putative transmembrane protein [Geobacillus sp. GHH01]
gi|56378604|dbj|BAD74512.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|297251830|gb|ADI25276.1| Rhomboid family protein [Geobacillus sp. C56-T3]
gi|445205366|gb|AGE20831.1| putative transmembrane protein [Geobacillus sp. GHH01]
Length = 205
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 13/165 (7%)
Query: 254 FSLPLL-------YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKS 306
FSLPL Y N I GE+WRLV+P+ LH H+A++ +L FGP + +
Sbjct: 32 FSLPLTALEPIWQYAVGTNGAIRHGEYWRLVSPIVLHRDFHHMAVNSLSLWLFGPWLEHA 91
Query: 307 YGPFTFFLIYTLGGISGNL-TSFLHTPEPT-VGGTGPVFAIIGAWLIYQFQNKDLIAKDV 364
G F +Y GGI N+ T FL P T VG +G +FA+ G + +DL+A
Sbjct: 92 LGKRKFLFLYIGGGIGANVATLFLLPPLYTHVGASGAIFALFGMYSYLALFRRDLVAPRH 151
Query: 365 SERMFQKAILSTALSFIISNFGPVDTWAHL-GAAFTGIIYGFLTC 408
++ + + L + + + AHL G A G++ FL+
Sbjct: 152 AQLLLSVMAVHLLLGIMTPD---GNLLAHLFGFAVGGLLAPFLSI 193
>gi|357010436|ref|ZP_09075435.1| rhomboid family protein [Paenibacillus elgii B69]
Length = 219
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WR VT +F+H G H+ + +AL F + + G + + Y GI+GN+ S +
Sbjct: 68 WRYVTAIFVHIGFQHLLFNSFALYVFAAPLERMLGSWRYAAFYLASGIAGNVASAWFHSD 127
Query: 334 PTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
P + G +G ++ I A+L +DLI + ++ I+ SF++ N VD +
Sbjct: 128 PYIGAGASGAIYGIYAAYLYLSVFRRDLIDYQTKQTVWTIVIIGFVYSFVVQN---VDVY 184
Query: 392 AHLGAAFTGI 401
AH G G+
Sbjct: 185 AHAGGFVGGL 194
>gi|423370476|ref|ZP_17347883.1| hypothetical protein IC3_05552 [Bacillus cereus VD142]
gi|401073947|gb|EJP82356.1| hypothetical protein IC3_05552 [Bacillus cereus VD142]
Length = 182
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 249 SEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYG 308
S+F F L A NE I GEWWR++T + +H L H + L FG + K G
Sbjct: 28 SDFSLFHL-----AAYNEYIAKGEWWRVITSLLVHVDLQHFLSNSICLFVFGSSIEKQLG 82
Query: 309 PFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
F F +I+ L GI GN++S++ P + G +G +F ++GA L
Sbjct: 83 HFPFIIIFFLSGILGNISSYIIMPLEYIHAGASGGIFGLLGAQL 126
>gi|451847170|gb|EMD60478.1| hypothetical protein COCSADRAFT_40121 [Cochliobolus sativus ND90Pr]
Length = 535
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+WWR +TPMFLH+G+ H+ + T G + K GP F L+Y GI G + +
Sbjct: 273 QWWRFITPMFLHAGVIHIGFNMLLQWTLGRDMEKEIGPLRFALVYFSAGIFGFVLGGNYA 332
Query: 332 PE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
P+ +VG +G +F ++ L+ + V + +F +L A++F+I +D
Sbjct: 333 PDGITSVGCSGSLFGVLALTLLDLLYHWSTRRSPVKDLLF--LLLDMAIAFVIGLLPGLD 390
Query: 390 TWAHLGAAFTGIIYG 404
++H+G G++ G
Sbjct: 391 NFSHIGGFLMGLVLG 405
>gi|239825780|ref|YP_002948404.1| rhomboid family protein [Geobacillus sp. WCH70]
gi|239806073|gb|ACS23138.1| Rhomboid family protein [Geobacillus sp. WCH70]
Length = 205
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 26/206 (12%)
Query: 217 RTEETSNLY----LISILVSIDVAVFL-----FEIASPIRNSEFGFFSLPLLYGAKINEL 267
R E + ++SILV++ V ++ IA P+ GF N
Sbjct: 4 RMENAHTFFRFYPVVSILVALHVVIWFTFFLRIPIAEPLWEKMIGF-----------NAA 52
Query: 268 ILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327
+ GE+WRLV+P+ LH H+ ++ +L+ FGP + K G F L+Y GI N+ +
Sbjct: 53 VQNGEYWRLVSPLVLHVRFEHMIINSISLILFGPALEKMLGKSKFLLLYIGSGICANIAT 112
Query: 328 FLHTPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF 385
F P G +G +F + G + +D+I + +F +S +SF N
Sbjct: 113 FFVLPAMYSHAGASGAIFGLFGMYGYLIVFCRDIIETQHARLLFAVICISLFISFTAPN- 171
Query: 386 GPVDTWAHL-GAAFTGIIYGFLTCPL 410
V+ AHL G GII F++ L
Sbjct: 172 --VNMVAHLFGFLGGGIIAPFISSHL 195
>gi|389818133|ref|ZP_10208574.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
gi|388464065|gb|EIM06401.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
Length = 202
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 16/159 (10%)
Query: 256 LPLL------YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGP 309
LPLL YG N I G+WWR TP+FLH GL H+ + ++L FGP++ + G
Sbjct: 34 LPLLGDWLYFYGVGSNFYIAEGQWWRFFTPIFLHGGLMHLLFNMFSLFLFGPELERLTGK 93
Query: 310 FTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGPVFAIIGAW--LIYQFQNKDLIAKDVS 365
F IY G+ + ++ P VG +G +F + GA+ L+Y + + L +
Sbjct: 94 VRFTTIYLSAGLFASAATYFLQPLDYAHVGASGAIFGVFGAFGALVY-YGGRAL--PQLK 150
Query: 366 ERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYG 404
+ + ++S ++F+ N V+ AH+ TG + G
Sbjct: 151 QIILPIIVISIVMTFLTPN---VNVTAHIAGMITGFLIG 186
>gi|375088668|ref|ZP_09735006.1| hypothetical protein HMPREF9703_01088 [Dolosigranulum pigrum ATCC
51524]
gi|374561633|gb|EHR32972.1| hypothetical protein HMPREF9703_01088 [Dolosigranulum pigrum ATCC
51524]
Length = 232
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 13/149 (8%)
Query: 258 LLYGAKINELILVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIY 316
++ GAK NELI+ EWWRL+TP+FLH G+ H+ + + G Q+ +G F L+Y
Sbjct: 44 IIMGAKFNELIIYNNEWWRLITPIFLHIGVPHLLFNMLVVYFLGQQIEFIFGHVRFALLY 103
Query: 317 TLGGISGNLTSFLHTPEPTVGGTGPVFA-----IIGAWLIYQFQNKDLIAKDVSERMFQK 371
G+ GN SF + G + +F I+ + L + ++A+ +F
Sbjct: 104 LFSGLMGNAFSFAFNTSLSAGASTAIFGLFVSTIVLSKLFPHVRELGMLARQYGMLIF-- 161
Query: 372 AILSTALSFIISNFGPVDTWAHLGAAFTG 400
L+ SF+ G VD H+G G
Sbjct: 162 --LNIVFSFMS---GGVDNMGHIGGLVGG 185
>gi|219110513|ref|XP_002177008.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411543|gb|EEC51471.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 570
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 12/203 (5%)
Query: 261 GAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA+ LIL G+W+R+VTP+FLH+G+ H + A G + +++G T +++ +
Sbjct: 271 GARQTSLILEEGQWFRIVTPIFLHAGIVHYLTNMLAFWFIGGAIEEAHGIATAIVLFFIP 330
Query: 320 GISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLI-AKDVSERM--FQKAILS 375
G+ GN+ P+ +VG +G F +IG + N +++ ++D E + ++K I +
Sbjct: 331 GVGGNILGATFLPQYISVGASGGTFGMIGGYFADIVLNWNILCSRDHDEDVLNWRKNIAA 390
Query: 376 TA------LSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITL 428
A ++ ++ P +D + HLGA G++ G V L + R + L
Sbjct: 391 IARLAIGIIALLVLGVTPFIDNFTHLGALCYGLLCGLFAIEPVPLEGSIVRLPSRKMSDL 450
Query: 429 IRQYANPCKSLIVFTIFVIILGS 451
+ + S+ + I ++L S
Sbjct: 451 LFRQIGAIVSVFLLVITSVVLNS 473
>gi|311105467|ref|YP_003978320.1| rhomboid family protein [Achromobacter xylosoxidans A8]
gi|310760156|gb|ADP15605.1| rhomboid family protein [Achromobacter xylosoxidans A8]
Length = 425
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+G + L L GE+WRL T MFLH G H+A++ AL + G + + F +Y L
Sbjct: 53 WGGNVPALTLSGEYWRLFTSMFLHVGFLHLAINMLALWSLGVILEARMRSWVFLGVYLLS 112
Query: 320 GISGNL-TSFLHTPE--PTVGGTGPVFAIIGAWLIYQFQNKDL 359
G+ G+L T+ H E + G +G + I GA ++Y ++ +
Sbjct: 113 GLCGSLVTALWHRDEFFLSCGASGAILGIFGAAIVYGLHDRRM 155
>gi|163815032|ref|ZP_02206419.1| hypothetical protein COPEUT_01188 [Coprococcus eutactus ATCC 27759]
gi|158449715|gb|EDP26710.1| peptidase, S54 family [Coprococcus eutactus ATCC 27759]
Length = 377
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FL 329
E+ RL++ MFLHSG H+ + +AL FG V K G +IY + GI L S
Sbjct: 92 EYGRLLSSMFLHSGFDHLVGNMFALFMFGSTVEKKLGSLRMTIIYFVSGIVSGLISMNLS 151
Query: 330 HTPEP-----TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN 384
H +P ++G +G VF ++ A + +K S R AI+ + I +
Sbjct: 152 HVMDPSRMHFSIGASGAVFGVMCAAVFLSVMG----SKKASRRDMTIAIVLVVIYAIYTY 207
Query: 385 FGPVDTWAHLGAAFTGIIYGF 405
+D +AH+G A G I F
Sbjct: 208 EENIDIYAHIGGAVVGGILAF 228
>gi|320592945|gb|EFX05354.1| rhomboid family membrane protein [Grosmannia clavigera kw1407]
Length = 734
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 11/159 (6%)
Query: 252 GFFSLP-LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPF 310
GF +P Y ++ +W+R + PMF+H+GL H+ + LT G + ++ G
Sbjct: 454 GFGGVPEPAYDGNADQSPQPDQWFRFIVPMFMHAGLIHIGFNMMLQLTMGRDMERAIGSI 513
Query: 311 TFFLIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVS 365
FF++Y GI G + ++ T + G +G +F +I L+Y ++++ KD+
Sbjct: 514 RFFIVYICSGIFGFVLGGNYAATGISSTGASGALFGVIALTLLDLLYSWRDRRNPVKDL- 572
Query: 366 ERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYG 404
MF L +SF++ +D ++H+G F G+ G
Sbjct: 573 --MF--IFLDVLISFVLGLLPGLDNFSHIGGFFMGLALG 607
>gi|160935902|ref|ZP_02083276.1| hypothetical protein CLOBOL_00795 [Clostridium bolteae ATCC
BAA-613]
gi|158441144|gb|EDP18861.1| hypothetical protein CLOBOL_00795 [Clostridium bolteae ATCC
BAA-613]
Length = 206
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 13/183 (7%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINE-LILVGEWWRLVTPMFLHSGLFH 288
L +++V VFL+ I ++E G F + +GA +IL GE++RL T MFLH G+ H
Sbjct: 16 LAAVNVLVFLY--LEAIGSTEDGVFMVK--HGAVFAPFVILGGEYYRLFTAMFLHFGVSH 71
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF---LHTPEPTV--GGTGPVF 343
+A + LL G ++ ++ G + + Y G++ N S + T + +V G +G +F
Sbjct: 72 LANNMLVLLVLGEKMERALGHIKYLIFYLASGVAANSISLAVQVRTGQASVSAGASGAIF 131
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
++G L+Y ++ R +L T S VD AH+G +G I
Sbjct: 132 GVVGG-LVYVIAIHHGQLDGLTNRQLGFMVLLTLYHGFTS--AGVDNMAHIGGLISGFIL 188
Query: 404 GFL 406
G L
Sbjct: 189 GIL 191
>gi|404484163|ref|ZP_11019377.1| hypothetical protein HMPREF1135_02437 [Clostridiales bacterium
OBRC5-5]
gi|404342843|gb|EJZ69213.1| hypothetical protein HMPREF1135_02437 [Clostridiales bacterium
OBRC5-5]
Length = 209
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L YGA E I GE++RLVT MF+H G+ H+ + L+ G ++ G FF+IY
Sbjct: 39 LKYGAAFPENIKNGEYYRLVTSMFMHFGIEHIVNNMLILVLLGGKLEDILGHVRFFIIYM 98
Query: 318 LGGISGNLTS-----FLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA 372
L GI N+ S + + G +G +F I+GA L N+ I KD+S Q+
Sbjct: 99 LSGILANIGSDWFQNYTGDVAVSAGASGAIFGIVGALLYALLVNRGRI-KDLS---VQQI 154
Query: 373 ILSTAL 378
+S AL
Sbjct: 155 AISLAL 160
>gi|294827768|ref|NP_711133.2| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|386073248|ref|YP_005987565.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
gi|293385613|gb|AAN48151.2| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|353457037|gb|AER01582.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
Length = 226
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA L G+WWRL+ +F+H+G H+ + + L+ V G F ++Y
Sbjct: 73 WGANRRIETLAGQWWRLLINVFVHAGFPHLFFNGFGLIISAIFVELILGRIRFLILYIFS 132
Query: 320 GISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
G+ G+L S + P +VG +G +F + GA L L+ D R +K +L +
Sbjct: 133 GLCGSLASIVWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIMIV 185
Query: 379 SFIISN-----FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
+FI++ FG +D AH+G +G + G + L Q G
Sbjct: 186 TFILTGLLWGLFGGIDNAAHIGGLVSGTLSGII---LFQFG 223
>gi|430743565|ref|YP_007202694.1| hypothetical protein Sinac_2701 [Singulisphaera acidiphila DSM
18658]
gi|430015285|gb|AGA26999.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 411
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Query: 264 INELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISG 323
+NEL GE WR+VT F+H L H+ ++ + L G V YG F +Y + G G
Sbjct: 70 LNELYR-GEIWRVVTCTFVHYNLLHLGMNLYGLYQLGSLVESWYGSGQFLAVYLVIGGGG 128
Query: 324 NLTSFL----HTPEPTV---GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST 376
N+ S L EP + GG+ V ++ + ++++ I + +M + +
Sbjct: 129 NIVSALLRHARGMEPRMHSGGGSTVVLGLVALCAVMGWRSRSRIGDHLRSQMVGILVFTA 188
Query: 377 ALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
I+ P +D W H G A G + GFL L++ D
Sbjct: 189 ----ILGQLHPMIDNWGHAGGALVGAVVGFLHRILIRTSD 224
>gi|443326975|ref|ZP_21055612.1| putative membrane protein [Xenococcus sp. PCC 7305]
gi|442793404|gb|ELS02854.1| putative membrane protein [Xenococcus sp. PCC 7305]
Length = 203
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 21/198 (10%)
Query: 225 YLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLY--GAKINELILVGEWWRLVTPMFL 282
Y+ IL+ +++ VF+ E+ S G LP LY GA ++E I GEWWRL+ FL
Sbjct: 10 YVTFILIFVNLVVFILEMRSG------GSTDLPTLYRLGALVSENIKQGEWWRLINANFL 63
Query: 283 HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPT------- 335
H G FH+ + AL G V S G + ++Y L G +G++ +F T
Sbjct: 64 HFGWFHLISNMLALFFIGSIVELSIGVERYLIVYLLSG-TGSMLTFALLANYTGQVQVVL 122
Query: 336 VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHL 394
+G + + IG L + + + Q I L FI+ N P V ++HL
Sbjct: 123 MGASAAIMGTIGTMLTTSLADWLEYRTSLKAKRLQTVIFVVVLQFILDNIIPNVSFYSHL 182
Query: 395 GAAFTGIIYGFLTCPLVQ 412
G I GF+ ++
Sbjct: 183 ----FGFIIGFVVSLILM 196
>gi|423393314|ref|ZP_17370540.1| hypothetical protein ICG_05162 [Bacillus cereus BAG1X1-3]
gi|401630233|gb|EJS48040.1| hypothetical protein ICG_05162 [Bacillus cereus BAG1X1-3]
Length = 190
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L + A N I GEWWR++T +F+H L H + L G + K G F+F +I+
Sbjct: 32 LFHMAAYNAYIAKGEWWRVITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFF 91
Query: 318 LGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
L GI GN++S++ P + G +G +F ++GA L
Sbjct: 92 LSGIIGNISSYIIMPLDYIHAGASGGIFGLLGAQL 126
>gi|423462496|ref|ZP_17439290.1| hypothetical protein IEI_05633 [Bacillus cereus BAG5X2-1]
gi|401131790|gb|EJQ39440.1| hypothetical protein IEI_05633 [Bacillus cereus BAG5X2-1]
Length = 190
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 262 AKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI 321
A NE I GEWWRL+T + +H L H + L G + K G F+F +I+ L GI
Sbjct: 36 ASYNEYIAKGEWWRLITSLLVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGI 95
Query: 322 SGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
GN++S+L P + G +G +F ++GA L
Sbjct: 96 LGNISSYLIMPLEYIHAGASGGIFGLLGAQL 126
>gi|359490352|ref|XP_003634078.1| PREDICTED: inactive rhomboid protein 1 [Vitis vinifera]
Length = 324
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 3/148 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRLVT ++LH+G+ H+ ++ +L+ G ++ + +G +IY L G G+ L+S
Sbjct: 111 WRLVTCIWLHAGIIHLLVNMLSLVLIGIRLEQQFGFVRIGVIYLLSGFGGSVLSSLFIQN 170
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L N + + + I++ L+ + V+ +A
Sbjct: 171 SISVGASGALFGLLGAMLSELITNWSMYTNRAAALLTLLVIVAVNLT--VGILPRVNNFA 228
Query: 393 HLGAAFTGIIYGFLTCPLVQLGDASSRN 420
H+G TG GF+ P Q G RN
Sbjct: 229 HIGGFVTGFFLGFILMPRPQFGWIEGRN 256
>gi|257065576|ref|YP_003151832.1| rhomboid family protein [Anaerococcus prevotii DSM 20548]
gi|256797456|gb|ACV28111.1| Rhomboid family protein [Anaerococcus prevotii DSM 20548]
Length = 225
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA + L GEWWR +T F+H G FH+ + + L GP + YG F +IY L
Sbjct: 41 FGAMVKPLFYQGEWWRALTAAFIHIGFFHILFNMYFLYNIGPLFERLYGSINFLIIYILA 100
Query: 320 GISGNLTSFLHTPEPTV 336
G+ GNL ++ TV
Sbjct: 101 GVLGNLFTYAFGGANTV 117
>gi|58268562|ref|XP_571437.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57227672|gb|AAW44130.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 422
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 13/147 (8%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFL 329
+WWR + P+FLH G+ H+ ++ + QV + G F ++Y LGGI G + +F
Sbjct: 185 QWWRFILPIFLHVGIIHLIVNMLVQIIVSAQVEREMGTIPFLIVYMLGGIYGFVLGGNFT 244
Query: 330 HTPEPTVGGTGPVFA-----IIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN 384
T P+VG +G +FA ++ L ++++ + K + +F + ++ A+ +I +
Sbjct: 245 RTGIPSVGASGALFATNACVLVDLVLHWKYEER---PKLKAFLLFLEFVIGFAMGYIPNA 301
Query: 385 FGPVDTWAHLGAAFTGIIYGFLTCPLV 411
VD AHLG GI+ G + P +
Sbjct: 302 ---VDGLAHLGGWAMGILCGTILYPAI 325
>gi|423219507|ref|ZP_17206003.1| hypothetical protein HMPREF1061_02776 [Bacteroides caccae
CL03T12C61]
gi|392625402|gb|EIY19471.1| hypothetical protein HMPREF1061_02776 [Bacteroides caccae
CL03T12C61]
Length = 584
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 14/172 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ +++ +F+ +A + E +L L +GA L L G+WWR +T F+H G FH
Sbjct: 160 ILMDLNLLIFILMVAFGVGILEPSTLAL-LKWGADFGPLTLTGDWWRAITCNFIHIGAFH 218
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 219 LLMNMYAFMYIGLWLEDLIGTRRMFISYLLTGVCSAAFSLYMHAETISAGASGAIFGLYG 278
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHL 394
+L + L+ + R +KA+L + L F+ N +D AH+
Sbjct: 279 IFLAF------LLFHHIP-RAQRKALLISILLFVGYNLVYGMKAGIDNAAHI 323
>gi|196250548|ref|ZP_03149238.1| Rhomboid family protein [Geobacillus sp. G11MC16]
gi|196209897|gb|EDY04666.1| Rhomboid family protein [Geobacillus sp. G11MC16]
Length = 205
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GE+WRL++P+ LH H+A + +L FGP + ++ G F L+Y GG+ N+ + L
Sbjct: 56 GEYWRLISPLVLHYDFNHMAANSLSLWLFGPWLERALGKGKFLLLYIGGGVGANIATVLL 115
Query: 331 TPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 381
P VG +G +FA+ G + +DLIA ++ + ++ LS +
Sbjct: 116 LPPMYSHVGASGAIFALFGMYSYLALFRRDLIAPKHTQLLLVIVVIHLLLSLM 168
>gi|330997596|ref|ZP_08321442.1| peptidase, S54 family [Paraprevotella xylaniphila YIT 11841]
gi|329570307|gb|EGG52042.1| peptidase, S54 family [Paraprevotella xylaniphila YIT 11841]
Length = 478
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 23/193 (11%)
Query: 223 NLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFL 282
+ + I +L+ ++ VF + + E SL L +GA L L G++WR+ T F+
Sbjct: 57 DFWAIPLLLGCNILVFFVMCLTGVGVLEPDNISL-LHWGANFGPLTLTGDYWRVWTCNFV 115
Query: 283 HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS-FLHTPEPTVGGTGP 341
HSGL H+ ++ +ALL G + G ++Y+L G+ ++ F H +VG +G
Sbjct: 116 HSGLIHLIMNVYALLFVGLFLEPMLGSLRVVMVYSLAGLYSSVAGLFCHADWISVGASGA 175
Query: 342 VFAIIGA----WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF------GPVDTW 391
+F + GA L Y+ Q+ ++K +L FI+ N VD
Sbjct: 176 IFGLYGALFARLLFYKGQSS-----------WRKILLIAIGGFILYNLLYGIGDNNVDNA 224
Query: 392 AHLGAAFTGIIYG 404
AH G G + G
Sbjct: 225 AHTGGLVAGFLLG 237
>gi|291548753|emb|CBL25015.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Ruminococcus torques L2-14]
Length = 206
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 17/188 (9%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVG-EWWRLVTPMFLHSGLF 287
+L+ I++ VF+ + I +E G+F L +GA I+ E++RL T +FLH G+
Sbjct: 12 MLIGINILVFI--ALTMIGRTEDGYFMLQ--HGAMYEPYIIENQEYYRLFTSLFLHFGIS 67
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF----LHTPE-PTVGGTGPV 342
H+ + L G K G F Y + GI GNL S +H + + G +G +
Sbjct: 68 HLLNNMVLLWALGSIFEKEAGKIRFLFCYFISGIGGNLLSLYWNIMHDRQIVSAGASGAI 127
Query: 343 FAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
F ++G L F N+ + M +LS F + VD AH+G G+I
Sbjct: 128 FGLMGGLLWIVFANRGRLGTLSGRGMLIMVVLSLYFGFTSTG---VDNLAHVG----GLI 180
Query: 403 YGFLTCPL 410
GFLT L
Sbjct: 181 CGFLTALL 188
>gi|403046456|ref|ZP_10901925.1| hypothetical protein SOJ_15340 [Staphylococcus sp. OJ82]
gi|402763152|gb|EJX17245.1| hypothetical protein SOJ_15340 [Staphylococcus sp. OJ82]
Length = 485
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+++++ ++L + R S+ + G ++ ++ GEW+RL++ +FLH H+
Sbjct: 162 LIAVNIIIWLAMVLFLNRFSDLKMLDV----GGLVHFNVVHGEWYRLISSIFLHYDFEHI 217
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S + + G +G +F +IGA
Sbjct: 218 LMNMLSLFIFGKIVESIVGHWRMIVIYIVAGLFGNFASLSFNIDTVSAGASGAIFGLIGA 277
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
+ + K K + + + I+ LS + N V AH+G G++
Sbjct: 278 IFGFMYVGKQFNRKLIGQLLIVLVIM-IGLSLFMQNINIV---AHIGGFVGGLL 327
>gi|153808412|ref|ZP_01961080.1| hypothetical protein BACCAC_02706 [Bacteroides caccae ATCC 43185]
gi|149128734|gb|EDM19951.1| peptidase, S54 family [Bacteroides caccae ATCC 43185]
Length = 584
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 14/172 (8%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
IL+ +++ +F+ +A + E +L L +GA L L G+WWR +T F+H G FH
Sbjct: 160 ILMDLNLLIFILMVAFGVGILEPSTLAL-LKWGADFGPLTLTGDWWRAITCNFIHIGAFH 218
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGI-SGNLTSFLHTPEPTVGGTGPVFAIIG 347
+ ++ +A + G + G F+ Y L G+ S + ++H + G +G +F + G
Sbjct: 219 LLMNMYAFMYIGLWLEDLIGTRRMFISYLLTGVCSAAFSLYMHAETISAGASGAIFGLYG 278
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF-----GPVDTWAHL 394
+L + L+ + R +KA+L + L F+ N +D AH+
Sbjct: 279 IFLAF------LLFHHIP-RAQRKALLISILLFVGYNLVYGMKAGIDNAAHI 323
>gi|402554172|ref|YP_006595443.1| rhomboid family protein [Bacillus cereus FRI-35]
gi|401795382|gb|AFQ09241.1| rhomboid family protein [Bacillus cereus FRI-35]
Length = 190
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 257 PLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIY 316
PL A NE I GEWWRL+T + +H L H + L G + K G +F +I+
Sbjct: 31 PLFPMAASNEYIAKGEWWRLLTSLLVHVDLQHFLFNSICLFALGSCIEKQLGHLSFIIIF 90
Query: 317 TLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
L GI GN++S+L P + G +G +F ++GA L
Sbjct: 91 FLSGILGNMSSYLIMPHEYIHAGASGGIFGLLGAQL 126
>gi|402311412|ref|ZP_10830357.1| peptidase, S54 family [Lachnospiraceae bacterium ICM7]
gi|400372694|gb|EJP25634.1| peptidase, S54 family [Lachnospiraceae bacterium ICM7]
Length = 209
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L YGA E I GE++RLVT MF+H G+ H+ + L+ G ++ G FF+IY
Sbjct: 39 LKYGAAFPENIKNGEYYRLVTSMFMHFGIEHIVNNMLILVLLGGKLEDILGHVRFFIIYM 98
Query: 318 LGGISGNLTS-----FLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA 372
L GI N+ S + + G +G +F I+GA L N+ I KD+S Q+
Sbjct: 99 LSGIIANIGSDWFQTYTGDVAVSAGASGAIFGIVGALLYALLVNRGRI-KDLS---VQQI 154
Query: 373 ILSTAL 378
+S AL
Sbjct: 155 AISLAL 160
>gi|392972219|ref|ZP_10337611.1| rhomboid family protein [Staphylococcus equorum subsp. equorum Mu2]
gi|392509932|emb|CCI60913.1| rhomboid family protein [Staphylococcus equorum subsp. equorum Mu2]
Length = 391
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+++++ ++L + R S+ + G ++ ++ GEW+RL++ +FLH H+
Sbjct: 68 LIAVNIIIWLAMVLFLNRFSDLKMLDV----GGLVHFNVVHGEWYRLISSIFLHYDFEHI 123
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIGA 348
++ +L FG V G + +IY + G+ GN S + + G +G +F +IGA
Sbjct: 124 LMNMLSLFIFGKIVESIVGHWRMIVIYIVAGLFGNFASLSFNIDTVSAGASGAIFGLIGA 183
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
+ + K K + + + I+ LS + N V AH+G G++
Sbjct: 184 IFGFMYVGKQFNRKLIGQLLIVLVIM-IGLSLFMQNINIV---AHIGGFVGGLL 233
>gi|356557245|ref|XP_003546928.1| PREDICTED: rhomboid-related protein 3-like [Glycine max]
Length = 324
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 15/206 (7%)
Query: 259 LYGAKINELIL-VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
L GA EL++ E WR + MFLH+G+ H+ + ++LL G ++ K +G L+Y
Sbjct: 95 LLGALEKELVVDQNEVWRFFSCMFLHAGVVHLLANMFSLLFIGVRLEKEFGFLKIGLLYV 154
Query: 318 LGGISGNLTSFLHTPEP-----TVGGTGPVFAIIGAWLIYQFQNKDLIAKDV-SERMFQK 371
L G G++ S LH E +VG +G +F ++GA L N + A V + Q
Sbjct: 155 LSGFGGSVLSVLHLKESEANTVSVGASGALFGLLGAMLSELLTNWSIYANKVLYPCLLQC 214
Query: 372 AILSTALSFIISN----FGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGI 426
A L++ L + N F P VD AH+G G GF+ Q G +R G
Sbjct: 215 AALTSLLIIVGLNLAVGFLPHVDNSAHVGGFLAGYFLGFVLLMRPQYGYV-NRKYIPPGY 273
Query: 427 TLIR--QYANPCKSLIVFTIFVIILG 450
+ R +Y ++ ++ +++LG
Sbjct: 274 DVKRKSKYKWYQYFFLIMSVIILLLG 299
>gi|340502629|gb|EGR29302.1| rhomboid family protein, putative [Ichthyophthirius multifiliis]
Length = 255
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 260 YGAKINELIL-VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
YGA + LI + WR VT FLH+ H+ + + F + +YG FT F I+ L
Sbjct: 76 YGANVPSLIKNENQLWRFVTAAFLHANFLHIFFNMISTFIFVSSLEHTYGFFTVFYIWIL 135
Query: 319 GGISGNLTS--FLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLI--AKDVSERMFQKAIL 374
I GN+ S F VG + +F +IG +L Y N + + +D+ + AIL
Sbjct: 136 SAIGGNIFSADFATQNSIAVGASTALFGMIGLYLAYLILNWNALRFLEDLRCFVLCMAIL 195
Query: 375 STALSFIIS--NFG--------PVDTWAHLGAAFTGIIYG 404
++ F++S N G +D + H G TGI+ G
Sbjct: 196 IVSMVFLLSSGNSGIMGGEKEQNIDNYGHFGGFITGILAG 235
>gi|339441829|ref|YP_004707834.1| hypothetical protein CXIVA_07650 [Clostridium sp. SY8519]
gi|338901230|dbj|BAK46732.1| hypothetical protein CXIVA_07650 [Clostridium sp. SY8519]
Length = 218
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 97/204 (47%), Gaps = 21/204 (10%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELIL-VGEWWRLVTPMFLHSGLFH 288
+V ++ +FL I S + ++E G F L+GA + + GEW+RL+T FLH G+ H
Sbjct: 27 IVLLNAVIFL--ILSVLGDTEDGAFMY--LHGAMYPDAVFDSGEWYRLLTSSFLHFGISH 82
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS---FLHTPEPTV--GGTGPVF 343
+ + L G + K++G + + Y + +L S L P V G +G +F
Sbjct: 83 LVNNMVMLFCLGSYLEKAFGRIKYAVFYAAVCVFSSLASSWWMLQQDSPAVSGGASGAIF 142
Query: 344 AIIGA--WLIYQFQNKDLIAKDVSERMFQKAI-LSTALSFIISNFGPVDTWAHLGAAFTG 400
IIGA W+I + + +D+ R F + LS F ++ VD AH+G G
Sbjct: 143 GIIGALLWIILRNHGR---FRDMDLRRFLIMLALSLYYGFTTAD---VDNAAHIGGLIFG 196
Query: 401 IIYGFLTCPLVQLGDASSRNSQEE 424
+ G L P + D S RNS E
Sbjct: 197 FLLGILMAP--RGLDVSRRNSYTE 218
>gi|313673694|ref|YP_004051805.1| rhomboid family protein [Calditerrivibrio nitroreducens DSM 19672]
gi|312940450|gb|ADR19642.1| Rhomboid family protein [Calditerrivibrio nitroreducens DSM 19672]
Length = 240
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 15/151 (9%)
Query: 211 RDLALQRTEETSNLYLISILVSIDVAVFLFEIASP--IRNSEFGFFSL-PLLYG----AK 263
RD+ +R N SI+V I++ +FL+E++ P + N F F L P + A
Sbjct: 5 RDIIPRRDFPFVNY---SIIV-INILIFLYEVSLPEGLLNDFFYLFGLVPARFSHPEWAY 60
Query: 264 INELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISG 323
N L + +W T MFLH FH+ + W L FG V G F + + Y L G++
Sbjct: 61 FNGL-YIDNYWPFFTNMFLHGSWFHLISNIWTLFIFGDNVEDRLGHFKYLIFYILSGLAA 119
Query: 324 NLTSFLHTPE---PTVGGTGPVFAIIGAWLI 351
++T F+ + P +G +G + ++GA+LI
Sbjct: 120 SITHFIFNIDSTIPAIGASGAIAGVMGAYLI 150
>gi|138893878|ref|YP_001124331.1| hypothetical protein GTNG_0202 [Geobacillus thermodenitrificans
NG80-2]
gi|134265391|gb|ABO65586.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 205
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GE+WRL++P+ LH H+A + +L FGP + ++ G F L+Y GG+ N+ + L
Sbjct: 56 GEYWRLISPLVLHYDFNHMAANSLSLWLFGPWLERALGKGKFLLLYIGGGVGANIATVLL 115
Query: 331 TPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 381
P VG +G +FA+ G + +DLIA ++ + ++ LS +
Sbjct: 116 LPPMYTHVGASGAIFALFGMYSYLALFRRDLIAPKHTQLLLVIVVIHLLLSLM 168
>gi|225455416|ref|XP_002279077.1| PREDICTED: inactive rhomboid protein 1 isoform 1 [Vitis vinifera]
gi|297741091|emb|CBI31822.3| unnamed protein product [Vitis vinifera]
Length = 325
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 3/148 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRLVT ++LH+G+ H+ ++ +L+ G ++ + +G +IY L G G+ L+S
Sbjct: 112 WRLVTCIWLHAGIIHLLVNMLSLVLIGIRLEQQFGFVRIGVIYLLSGFGGSVLSSLFIQN 171
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L N + + + I++ L+ + V+ +A
Sbjct: 172 SISVGASGALFGLLGAMLSELITNWSMYTNRAAALLTLLVIVAVNLT--VGILPRVNNFA 229
Query: 393 HLGAAFTGIIYGFLTCPLVQLGDASSRN 420
H+G TG GF+ P Q G RN
Sbjct: 230 HIGGFVTGFFLGFILMPRPQFGWIEGRN 257
>gi|412993959|emb|CCO14470.1| rhomboid family protein [Bathycoccus prasinos]
Length = 442
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FL 329
EWWRL + GL HV + +L G ++ G +F +Y LG G +T+ F
Sbjct: 232 EWWRLPSAALADFGLEHVLATNVSLWLIGREIETLLGTTSFLAVYFLGATGGAITTLAFD 291
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKD--LIAKDVSERMFQKAILSTALSFIISNFGP 387
+ + G +G VFA+ GA L Y N + + + R+F+ S AL +I S
Sbjct: 292 DSSKLIAGSSGAVFALYGAILTYTVLNLESGWNQRGFTTRLFRIGASSIALCYIASETAS 351
Query: 388 ------VDTWAHLGAAFTGIIYGFLT-CPL 410
V+ W HLG +GI+ + CPL
Sbjct: 352 DGATHVVNNWDHLGGFLSGILLAYYGLCPL 381
>gi|126438092|ref|YP_001073783.1| rhomboid family protein [Mycobacterium sp. JLS]
gi|126237892|gb|ABO01293.1| Rhomboid family protein [Mycobacterium sp. JLS]
Length = 289
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 25/203 (12%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++++V VFL + S EF +L+ + + GEW+RL T FLH G H+
Sbjct: 82 LIAVNVLVFLMQTTSGQLEREF------VLWTPGVAD----GEWYRLATSAFLHYGAMHL 131
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGPVFAIIG 347
+ WAL GP + G F +Y L + G++ +L +P T G +G VF + G
Sbjct: 132 LFNMWALYVVGPPLEMWLGRLRFGALYALSALGGSVLVYLLSPINAATAGASGAVFGLFG 191
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI---ISNFGPVDTWAHLGAAFTGIIYG 404
A + + +L + ++ + IL+ +F+ IS G + H+G G++ G
Sbjct: 192 AMFVVA-RKLNLDIRGIAAII----ILNLVFTFVYPLISGQG-ISWQGHVG----GLVTG 241
Query: 405 FLTCPLVQLGDASSRNSQEEGIT 427
+ A RN + G+T
Sbjct: 242 AAIAGVYAYAPAGRRNLVQGGVT 264
>gi|108802111|ref|YP_642308.1| rhomboid-like protein [Mycobacterium sp. MCS]
gi|119871264|ref|YP_941216.1| rhomboid family protein [Mycobacterium sp. KMS]
gi|108772530|gb|ABG11252.1| Rhomboid-like protein [Mycobacterium sp. MCS]
gi|119697353|gb|ABL94426.1| Rhomboid family protein [Mycobacterium sp. KMS]
Length = 289
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 25/203 (12%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++++V VFL + S EF +L+ + + GEW+RL T FLH G H+
Sbjct: 82 LIAVNVLVFLMQTTSGQLEREF------VLWTPGVAD----GEWYRLATSAFLHYGAMHL 131
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGPVFAIIG 347
+ WAL GP + G F +Y L + G++ +L +P T G +G VF + G
Sbjct: 132 LFNMWALYVVGPPLEMWLGRLRFGALYALSALGGSVLVYLLSPINAATAGASGAVFGLFG 191
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI---ISNFGPVDTWAHLGAAFTGIIYG 404
A + + +L + ++ + IL+ +F+ IS G + H+G G++ G
Sbjct: 192 AMFVVA-RKLNLDIRGIAAII----ILNLVFTFVYPLISGQG-ISWQGHVG----GLVTG 241
Query: 405 FLTCPLVQLGDASSRNSQEEGIT 427
+ A RN + G+T
Sbjct: 242 AAIAGVYAYAPAGRRNLVQGGVT 264
>gi|449455106|ref|XP_004145294.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
gi|449473549|ref|XP_004153913.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
gi|449508492|ref|XP_004163327.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
Length = 383
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 263 KINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGIS 322
++++++ + WRL++ ++LH+G+FH+ + +L+ G ++ + +G ++Y + G
Sbjct: 114 EVDKVVYGHQAWRLISCLWLHAGVFHILANMLSLVFIGIRLEQEFGFVRIGMLYIVSGFG 173
Query: 323 GNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 381
G+L S L +VG +G +F ++G L N + A + A L T L I
Sbjct: 174 GSLMSALFIQSGISVGASGALFGLLGGMLSELLTNWTIYANKL-------AALLTLLFII 226
Query: 382 ISNFG-----PVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNS 421
+ N VD +AH+G +G + GF+ Q G S RN+
Sbjct: 227 VINLAVGVLPHVDNFAHIGGFISGFLLGFVFLVRPQFGWVSQRNA 271
>gi|15221690|ref|NP_176500.1| rhomboid -like 2 [Arabidopsis thaliana]
gi|12323258|gb|AAG51610.1|AC010795_14 membrane protein, putative; 61952-60281 [Arabidopsis thaliana]
gi|28393358|gb|AAO42103.1| putative membrane protein [Arabidopsis thaliana]
gi|28827620|gb|AAO50654.1| putative membrane protein [Arabidopsis thaliana]
gi|77999980|dbj|BAE46871.1| Rhomboid family protein AtRBL2 [Arabidopsis thaliana]
gi|332195937|gb|AEE34058.1| rhomboid -like 2 [Arabidopsis thaliana]
Length = 317
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL++ M+LH+G+ H+ + +L+ G ++ + +G LIY + G+ G++ S L E
Sbjct: 111 WRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSILSSLFLQE 170
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L N + A + + + A++ + VD +A
Sbjct: 171 SISVGASGALFGLLGAMLSELLTNWTIYANKAAALI--TLLFIIAINLALGMLPRVDNFA 228
Query: 393 HLGAAFTGIIYGFLTCPLVQLGDASSRNS 421
H+G TG GF+ Q G +SR +
Sbjct: 229 HIGGFLTGFCLGFVLLVRPQYGWEASRTN 257
>gi|332148745|dbj|BAK20219.1| Rhomboid family KOMPEITO [Arabidopsis thaliana]
Length = 385
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 10/187 (5%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
E WR++T +LHSGLFH+ ++ +L+ G + + +GP +IY L GI G+L + L
Sbjct: 121 EIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYFLSGIMGSLFAVLFV 180
Query: 332 PE-PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P++ F +IGA L +N +L +S I + ++F+I +D
Sbjct: 181 RNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKISALAIIFTIFT--VNFLIGFLPFIDN 238
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASS-------RNSQEEGITLIRQYANPCKSLIVFT 443
+A++G +G + GF+ QL + L Q+ P +I
Sbjct: 239 FANIGGFISGFLLGFVLLFKPQLRQMPPSHKGKLFEDDMNRSTRLKEQFDRPVLRIICLL 298
Query: 444 IFVIILG 450
+F IL
Sbjct: 299 VFCGILA 305
>gi|423525847|ref|ZP_17502299.1| hypothetical protein IGC_05209 [Bacillus cereus HuA4-10]
gi|401165638|gb|EJQ72955.1| hypothetical protein IGC_05209 [Bacillus cereus HuA4-10]
Length = 190
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 249 SEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYG 308
S+F F L A NE I GEWWR++T + +H L H + L G + K G
Sbjct: 28 SDFSLFHL-----AAYNEYIAKGEWWRVITSLLVHVDLQHFLSNSICLFILGSSIEKQLG 82
Query: 309 PFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
F+F +I+ L GI GN++S++ P + G +G +F ++GA L
Sbjct: 83 HFSFIIIFFLSGILGNISSYIIMPLEYIHAGASGGIFGLLGAQL 126
>gi|340904956|gb|EGS17324.1| hypothetical protein CTHT_0066450 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 496
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 10/149 (6%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA +++ +W+R + P+F+H+G+ H+ + LT G + +S G FFL+Y G
Sbjct: 256 GASMDDKPEPNQWFRFIIPIFMHAGVIHIGFNLLLQLTLGRDMERSIGSIRFFLVYMCSG 315
Query: 321 ISGNLT--SFLHTPEPTVGGTGPVFAIIGAWLI---YQFQNKDLIAKDVSERMFQKAILS 375
I G + +F T + G +G +F II L+ Y ++++ KD+S +L+
Sbjct: 316 IFGFVMGGNFAATGIASTGASGSLFGIIALTLLDLFYSWKDRMNPVKDLS-----YILLN 370
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYG 404
+SF++ +D ++H+G G+ G
Sbjct: 371 VIISFVLGLLPGLDNFSHIGGFLMGLALG 399
>gi|297837099|ref|XP_002886431.1| hypothetical protein ARALYDRAFT_893154 [Arabidopsis lyrata subsp.
lyrata]
gi|297332272|gb|EFH62690.1| hypothetical protein ARALYDRAFT_893154 [Arabidopsis lyrata subsp.
lyrata]
Length = 317
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL++ M+LH+G+ H+ + +L+ G ++ + +G LIY + G+ G++ S L E
Sbjct: 111 WRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSILSSLFLQE 170
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L N + A + + + A++ + VD +A
Sbjct: 171 SISVGASGALFGLLGAMLSELLTNWTIYANKAAALI--TLLFIIAINLALGMLPRVDNFA 228
Query: 393 HLGAAFTGIIYGFLTCPLVQLGDASSRNS 421
H+G TG GF+ Q G +SR +
Sbjct: 229 HIGGFLTGFCLGFVLLVRPQYGWEASRTN 257
>gi|423556772|ref|ZP_17533075.1| hypothetical protein II3_01977 [Bacillus cereus MC67]
gi|401194087|gb|EJR01079.1| hypothetical protein II3_01977 [Bacillus cereus MC67]
Length = 182
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 249 SEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYG 308
S+F F L A NE I GEWWR++T + +H L H + L G + K G
Sbjct: 28 SDFSLFHL-----AAYNEYIAKGEWWRVITSLLVHVDLQHFLSNSICLFVLGSSIEKQLG 82
Query: 309 PFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
F+F +I+ L GI GN++S++ P + G +G +F ++GA L
Sbjct: 83 HFSFIIIFFLSGILGNISSYIIMPFEYIHAGASGGIFGLLGAQL 126
>gi|296005098|ref|XP_002808884.1| rhomboid protease ROM3, putative [Plasmodium falciparum 3D7]
gi|225632283|emb|CAX64162.1| rhomboid protease ROM3, putative [Plasmodium falciparum 3D7]
Length = 267
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 8/154 (5%)
Query: 258 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYT 317
+L GA LI G++WRLV P+FLH+ L+H+ ++ +L G + Y F LIY
Sbjct: 74 ILLGATYGPLIKEGQYWRLVLPIFLHANLWHLIINILCILNLGLIIESKYKKSKFLLIYF 133
Query: 318 LGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQN-KDLIAKDVSERMFQKAILS 375
L G +GN+ + + P + VG + F +IG + F K+L K ++ + I
Sbjct: 134 LSGATGNILTTICNPCQLAVGASTSGFGLIGCSIFEIFLAWKNLTRK--AKNYYILNIFL 191
Query: 376 TALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTC 408
L F+ +F P VD + H+G G FL C
Sbjct: 192 FLLFFMFVSFSPSVDLFGHIGGFLCG---AFLCC 222
>gi|159040476|ref|YP_001539729.1| rhomboid family protein [Salinispora arenicola CNS-205]
gi|157919311|gb|ABW00739.1| Rhomboid family protein [Salinispora arenicola CNS-205]
Length = 303
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEW+RL+T MFLH G+ H+ L+ +AL G + S GP F +Y + G+ GN+ ++L
Sbjct: 137 GEWYRLITAMFLHYGVIHLLLNMYALWILGRNLEASLGPARFLALYLISGLGGNVAAYLI 196
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
+ T G + +F + A + + + +DVS+ + IL L F ++ G +
Sbjct: 197 SAPNAATAGASTAIFGLFAALFVVGRR----LGRDVSQVL---PILVINLVFTLTVPG-I 248
Query: 389 DTWAHLGAAFTGIIYGFLTCPLVQLGDASSRN 420
HLG G++ G L ++ S R
Sbjct: 249 SIPGHLG----GLVLGALMAVILAYAPRSRRT 276
>gi|423456144|ref|ZP_17432997.1| hypothetical protein IEE_04888 [Bacillus cereus BAG5X1-1]
gi|423473256|ref|ZP_17449998.1| hypothetical protein IEM_04560 [Bacillus cereus BAG6O-2]
gi|401131810|gb|EJQ39459.1| hypothetical protein IEE_04888 [Bacillus cereus BAG5X1-1]
gi|402426408|gb|EJV58533.1| hypothetical protein IEM_04560 [Bacillus cereus BAG6O-2]
Length = 182
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 249 SEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYG 308
S+F F L A NE I GEWWR++T + +H L H + L G + K G
Sbjct: 28 SDFSLFHL-----AAYNEYIAKGEWWRVITSLLVHVDLQHFLSNSICLFILGSSIEKQLG 82
Query: 309 PFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
F+F +I+ L GI GN++S++ P + G +G +F ++GA L
Sbjct: 83 HFSFIIIFFLSGILGNISSYIIMPLEYIHAGASGGIFGLLGAQL 126
>gi|330818616|ref|YP_004362321.1| Rhomboid-like protein [Burkholderia gladioli BSR3]
gi|327371009|gb|AEA62365.1| Rhomboid-like protein [Burkholderia gladioli BSR3]
Length = 553
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 14/191 (7%)
Query: 221 TSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPM 280
+NL L + +V V+ +I + IR +GA L G+WWRL+T
Sbjct: 178 AANLLLFAAMVLNGVSPLQPDIPAMIR------------WGANYGPDTLDGDWWRLLTSS 225
Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGT 339
F H G H+A++ L FGP + YG F F +Y G+ ++ S L P + G +
Sbjct: 226 FEHFGALHLAVNLLVLARFGPLAERLYGSFRFLSLYLFAGVIASMASVLWDPMQCAAGAS 285
Query: 340 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAF 398
G + + GA L + + + V + A+ A P +D AHLG
Sbjct: 286 GAILGVFGALLACLLRRRRELPALVHDHQRSLALGFVAYCLYNGFLHPAIDNAAHLGGLA 345
Query: 399 TGIIYGFLTCP 409
G G P
Sbjct: 346 AGFAVGLALAP 356
>gi|392571168|gb|EIW64340.1| rhomboid-domain-containing protein [Trametes versicolor FP-101664
SS1]
Length = 317
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT--SFL 329
+W+R +TP+FLH+GL H L+ A LT Q+ + G F ++Y+ GI GN+ +F
Sbjct: 123 QWFRFITPIFLHAGLIHYLLNMLAQLTASAQIEREMGSLPFLILYSAAGIFGNVLGGNFA 182
Query: 330 HTPEPTVGGTGPVFAIIG-AWL------IYQFQNKDLIAKDVSERMFQKAILSTALSFII 382
P+VG +G +F I AW+ Y F+ +A + E ++ A+ FI
Sbjct: 183 LLGSPSVGASGAIFGTIAVAWIDLFAHWRYTFRPGRKLAFMIVE-----LVIGVAIGFIP 237
Query: 383 SNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANP 435
S HLG G++ P++ S N + ++R A P
Sbjct: 238 S---------HLGGLAMGLLVAMALYPII-----SPSNRHRIIVIVLRLIAVP 276
>gi|375007040|ref|YP_004980671.1| Rhomboid [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359285887|gb|AEV17571.1| Rhomboid [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 205
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 89/190 (46%), Gaps = 21/190 (11%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLL-------YGAKINELILVGEWWRLVTPMFL 282
L + A+ L IA+ + FSLPL Y N I GE WRLV+P+ L
Sbjct: 14 LYPVVAALLLVHIAAWL------LFSLPLTALEPIWQYAVGTNGAIRHGECWRLVSPIVL 67
Query: 283 HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTPEPT-VGGTG 340
H H+A + +L FGP + ++ G F +Y GGI N+ T FL P T VG +G
Sbjct: 68 HRDFHHMAANSLSLWLFGPWLERALGKRKFLFLYIGGGIGANVATLFLLPPLYTHVGASG 127
Query: 341 PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV-DTWAHL-GAAF 398
+FA+ G + +DL+A R Q + A+ +I P + AHL G A
Sbjct: 128 AIFALFGMYSYLALFRRDLVA----PRHAQLLLSVMAVHLLIGIMTPHGNLLAHLFGFAV 183
Query: 399 TGIIYGFLTC 408
G++ FL+
Sbjct: 184 GGLLAPFLSI 193
>gi|414876345|tpg|DAA53476.1| TPA: hypothetical protein ZEAMMB73_598699 [Zea mays]
Length = 663
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLH 330
E WRL+T ++LH+G+ H+ + +LL G ++ K +G +Y + G+ G+ L+S
Sbjct: 152 EGWRLITCIWLHAGVVHILANMLSLLMIGIRLEKEFGFIRIGTLYVISGVGGSLLSSLFM 211
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAK-DVSERMFQKAILSTALSFIISNFG--- 386
+VG +G +F ++G+ L +LI + E F A L T + I+ N
Sbjct: 212 VSNISVGASGALFGLLGSML------SELITNWTIYENKF--AALLTLVMIILINLAVGI 263
Query: 387 --PVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNS 421
VD +AHLG +G GF+ Q G + +NS
Sbjct: 264 LPHVDNFAHLGGFMSGFCLGFVLLMRPQFGYINQKNS 300
>gi|326672347|ref|XP_691851.4| PREDICTED: rhomboid family member 1-like [Danio rerio]
Length = 909
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +IY L GI+GNL S +
Sbjct: 706 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 765
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F I+ + FQ+ ++A+ R F K F +D
Sbjct: 766 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFTKLSCVVLFLFAFGLLPWIDN 823
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
+AH+ +G F P + G + Y + L+ T+FV I
Sbjct: 824 FAHICGFVSGFFLSFAFLPYISFGR-------------MDMYRKRLQILVALTLFVGIFS 870
Query: 451 SFIFVF 456
SF+ +F
Sbjct: 871 SFVVLF 876
>gi|377809821|ref|YP_005005042.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
gi|361056562|gb|AEV95366.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
Length = 229
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 27/194 (13%)
Query: 225 YLISILVSIDVAVFLF--------EIASPIRNSEFGFFSLPLLYGAKINELILVG-EWWR 275
++ +ILV ++V VFL I + IR YGA + E I G +++
Sbjct: 16 FVTNILVIVNVIVFLLMSVTGGTTNINNLIR------------YGAMVPESIKNGSDYFS 63
Query: 276 LVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPT 335
+ MF+H G+ H+ L+ L G + G + F Y L G+ GNL S T
Sbjct: 64 IFASMFIHIGIEHLVLNMVTLYFLGRILEAIMGHWKFLATYLLAGVFGNLVSLYFANPQT 123
Query: 336 V--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWA 392
+ G +G +F IIG WL+ + + +M Q+ ++ T L I GP VD A
Sbjct: 124 ISAGASGAIFGIIGVWLMLAITFRSV---PYLAQMGQQMLIFTILGLIGGFLGPDVDIAA 180
Query: 393 HLGAAFTGIIYGFL 406
HLG G + GF+
Sbjct: 181 HLGGVLAGFLLGFI 194
>gi|390343897|ref|XP_783490.3| PREDICTED: inactive rhomboid protein 1-like isoform 2
[Strongylocentrotus purpuratus]
Length = 887
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP- 332
+RL +FLH+G+FH LS +T + K G F +IY GI GNLTS + P
Sbjct: 677 YRLWLSLFLHAGIFHCVLSFIMHMTILRDLEKLAGWFRIAIIYIFSGIGGNLTSAILIPY 736
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
VG G F ++ ++ FQN ++ + AI+ + + + +D +A
Sbjct: 737 RAEVGPAGAQFGLLACLVVEVFQNWQILRNPCKALLKLLAIIMVLFALGLLPW--IDNFA 794
Query: 393 HLGAAFTGIIYGFLTCPLVQLGD 415
HLG GI F+ P + G+
Sbjct: 795 HLGGFICGIFLSFIFLPYICFGE 817
>gi|408679359|ref|YP_006879186.1| putative membrane protein [Streptomyces venezuelae ATCC 10712]
gi|328883688|emb|CCA56927.1| putative membrane protein [Streptomyces venezuelae ATCC 10712]
Length = 294
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 31/220 (14%)
Query: 211 RDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSE----FGFFSLPLLYGAKINE 266
R LA R + ++ IL+ +++AV+L + R + G+ P L E
Sbjct: 69 RTLAGGRVA-ADDRFVTKILIGVNLAVYLAVLVFGDRLVDELVLIGYAWSPAL-----GE 122
Query: 267 LILV--GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN 324
++ V GEW+RL+T LH ++H+ + L G V G + + L G+SG+
Sbjct: 123 VVGVADGEWYRLLTSTVLHQEVWHILFNVLGLWVIGGIVEPELGRIRYAALCLLSGLSGS 182
Query: 325 LTSFL--HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 382
+ +++ +P++G +G V+ +IGAW++ + + + IL ALS +I
Sbjct: 183 VLAYVVAEPNQPSLGASGVVYGLIGAWVVLARRRR---------HDMRPVILFVALSLLI 233
Query: 383 SNFGPVDTW-AHLGAAFTGII--YGFLTCP-----LVQLG 414
+ P +W AH+G G++ Y + P LVQ G
Sbjct: 234 TFTRPGISWEAHVGGLVAGVLVTYALVHAPRARRDLVQYG 273
>gi|261418550|ref|YP_003252232.1| rhomboid family protein [Geobacillus sp. Y412MC61]
gi|319765364|ref|YP_004130865.1| rhomboid family protein [Geobacillus sp. Y412MC52]
gi|261375007|gb|ACX77750.1| Rhomboid family protein [Geobacillus sp. Y412MC61]
gi|317110230|gb|ADU92722.1| Rhomboid family protein [Geobacillus sp. Y412MC52]
Length = 205
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 254 FSLPLL-------YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKS 306
FSLPL Y N I GE+WRLV+P+ LH H+A++ +L FGP + +
Sbjct: 32 FSLPLTALEPIWQYAVGTNGAIRHGEYWRLVSPIVLHRDFHHMAVNSLSLWLFGPWLEHA 91
Query: 307 YGPFTFFLIYTLGGISGNL-TSFLHTPEPT-VGGTGPVFAIIGAWLIYQFQNKDLIAKDV 364
G F +Y GGI N+ T FL P T VG +G +FA+ G + +DL+A
Sbjct: 92 LGKRKFLFLYIGGGIGANVATLFLLPPLYTHVGASGAIFALFGMYSYLALFRRDLVAPRH 151
Query: 365 SERM 368
++ +
Sbjct: 152 AQLL 155
>gi|390343899|ref|XP_003725988.1| PREDICTED: inactive rhomboid protein 1-like isoform 1
[Strongylocentrotus purpuratus]
Length = 888
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP- 332
+RL +FLH+G+FH LS +T + K G F +IY GI GNLTS + P
Sbjct: 678 YRLWLSLFLHAGIFHCVLSFIMHMTILRDLEKLAGWFRIAIIYIFSGIGGNLTSAILIPY 737
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
VG G F ++ ++ FQN ++ + AI+ + + + +D +A
Sbjct: 738 RAEVGPAGAQFGLLACLVVEVFQNWQILRNPCKALLKLLAIIMVLFALGLLPW--IDNFA 795
Query: 393 HLGAAFTGIIYGFLTCPLVQLGD 415
HLG GI F+ P + G+
Sbjct: 796 HLGGFICGIFLSFIFLPYICFGE 818
>gi|156094408|ref|XP_001613241.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802115|gb|EDL43514.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 593
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 3/158 (1%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
L G N + GE +RL ++LH G H+ + + + +G +++
Sbjct: 279 LGGLNTNYIRNYGELYRLFWSVYLHGGFMHIIFNVICQIQILWMIEPDWGFLRTMMLFFT 338
Query: 319 GGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
G++GNL S + P T+G +G ++ +IGA Y + I + +F ++
Sbjct: 339 SGVTGNLLSAVCDPCGVTIGSSGALYGLIGALFTYYIEYWKTIPRPCCVLIFMVIVIIFG 398
Query: 378 LSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
+ + FG D +AH+G GI+YGF T V D
Sbjct: 399 IFIGM--FGYTDNYAHMGGCLGGILYGFATITTVSAAD 434
>gi|145337690|ref|NP_177909.2| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332197915|gb|AEE36036.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 351
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 10/187 (5%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
E WR++T +LHSGLFH+ ++ +L+ G + + +GP +IY L GI G+L + L
Sbjct: 121 EIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYFLSGIMGSLFAVLFV 180
Query: 332 PE-PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P++ F +IGA L +N +L +S I + ++F+I +D
Sbjct: 181 RNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKISALAIIFTIFT--VNFLIGFLPFIDN 238
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASS-------RNSQEEGITLIRQYANPCKSLIVFT 443
+A++G +G + GF+ QL + L Q+ P +I
Sbjct: 239 FANIGGFISGFLLGFVLLFKPQLRQMPPSHKGKLFEDDMNRSTRLKEQFDRPVLRIICLL 298
Query: 444 IFVIILG 450
+F IL
Sbjct: 299 VFCGILA 305
>gi|455791418|gb|EMF43234.1| peptidase, S54 family [Leptospira interrogans serovar Lora str. TE
1992]
Length = 156
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 269 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF 328
L G+WWRL+T +F+H+G H+ + + L+ V G F ++Y G+ G+L S
Sbjct: 12 LAGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASI 71
Query: 329 LHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN--- 384
+ P +VG +G +F + GA L L+ D R +K +L ++FI++
Sbjct: 72 VWYPNTISVGASGAIFGLYGAIL-------GLVLMDAFPRDDKKNVLIMIVTFILTGLLW 124
Query: 385 --FGPVDTWAHLGAAFTGIIYGFLTCPLVQLG 414
FG +D AH+G +G + G + L Q G
Sbjct: 125 GLFGGIDNAAHIGGLVSGTLSGII---LFQFG 153
>gi|152993649|ref|YP_001359370.1| hypothetical protein SUN_2072 [Sulfurovum sp. NBC37-1]
gi|151425510|dbj|BAF73013.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 192
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 268 ILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327
+L GEWWRL T MFLH G+ H+ ++ +L G + + ++ IY G+ G L S
Sbjct: 18 VLKGEWWRLFTAMFLHGGMTHILMNMVSLYIIGRGMEMYFDTKSYLSIYLFSGLLGGLVS 77
Query: 328 -FLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQK-----AILSTALSFI 381
++H +G +G +F + GA + ++ + K + F K +++ + F
Sbjct: 78 LYIHPASVGIGASGAIFGVFGALAGFFIAHRKHLGKH--TKAFMKEFTVIIVINLVIGFS 135
Query: 382 ISNFGPVDTWAHLGAAFTGIIYGFL 406
I N VD AH+ G I G+L
Sbjct: 136 IPN---VDVSAHVAGTVVGFIGGYL 157
>gi|367037003|ref|XP_003648882.1| hypothetical protein THITE_2106847 [Thielavia terrestris NRRL 8126]
gi|346996143|gb|AEO62546.1| hypothetical protein THITE_2106847 [Thielavia terrestris NRRL 8126]
Length = 516
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 10/149 (6%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ +W+R +TP+F+H+G+ H+ + LT G + KS G FFL+Y G
Sbjct: 263 GTPLDTQPAPNQWFRFITPIFMHAGVIHIGFNMLLQLTLGRDMEKSIGSIRFFLVYMSAG 322
Query: 321 ISGNL--TSFLHTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVSERMFQKAILS 375
I G + +F T + G +G +F II L+Y ++++ +D++ +L
Sbjct: 323 IFGFVLGGNFAATGIASTGASGALFGIIALTLLDLLYSWRDRVNPVRDLA-----FIVLD 377
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYG 404
+SF++ +D ++H+G G+ G
Sbjct: 378 VVISFVLGLLPGLDNFSHIGGFLMGLALG 406
>gi|423480374|ref|ZP_17457064.1| hypothetical protein IEQ_00152 [Bacillus cereus BAG6X1-2]
gi|401148766|gb|EJQ56251.1| hypothetical protein IEQ_00152 [Bacillus cereus BAG6X1-2]
Length = 197
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 249 SEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYG 308
S+F F L A NE I GEWWR++T + +H L H + L G + K G
Sbjct: 28 SDFSLFHL-----AAYNEYIAKGEWWRVITSLLVHVDLQHFLSNSICLFVLGSSIEKQLG 82
Query: 309 PFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWL 350
F+F +I+ L GI GN++S++ P + G +G +F ++GA L
Sbjct: 83 HFSFIIIFFLSGILGNISSYIIMPLEYIHAGASGGIFGLLGAQL 126
>gi|302697719|ref|XP_003038538.1| hypothetical protein SCHCODRAFT_47563 [Schizophyllum commune H4-8]
gi|300112235|gb|EFJ03636.1| hypothetical protein SCHCODRAFT_47563 [Schizophyllum commune H4-8]
Length = 368
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT--SFL 329
+W+R +TP+FLH+G+ H+ L+ +A +T Q+ + G FFL Y GI GN+ +F
Sbjct: 139 QWFRFITPIFLHAGIVHLILNMFAQVTVSAQIEREMGSGGFFLTYFAAGIFGNILGGNFA 198
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
P+VG +G +F I + F + + V + +F I+ A+ I VD
Sbjct: 199 LVGIPSVGASGAIFGTIAVTWVDLFAHWKYQYRPVRKLIFM--IIELAIGIAIGFIPYVD 256
Query: 390 TWAH 393
+AH
Sbjct: 257 NFAH 260
>gi|145596990|ref|YP_001161287.1| rhomboid family protein [Salinispora tropica CNB-440]
gi|145306327|gb|ABP56909.1| Rhomboid family protein [Salinispora tropica CNB-440]
Length = 303
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
G+W+RLVT MFLH G+ H+ L+ +AL G + S GP F +Y + G+ GN+ ++L
Sbjct: 137 GQWYRLVTAMFLHYGVIHLLLNMYALWILGRTLEASLGPARFLALYLVAGLGGNVAAYLI 196
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
+ T G + +F + A + + + +DVS+ + IL L F ++ G +
Sbjct: 197 SAPNAATAGASTAIFGLFAALFVVGRR----MGRDVSQVL---PILVINLVFTLTVPG-I 248
Query: 389 DTWAHLGAAFTGIIYGFL 406
HLG G + F+
Sbjct: 249 SIPGHLGGLAVGGLMAFV 266
>gi|325264281|ref|ZP_08131012.1| putative small hydrophobic molecule transporter protein
[Clostridium sp. D5]
gi|324030352|gb|EGB91636.1| putative small hydrophobic molecule transporter protein
[Clostridium sp. D5]
Length = 223
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 20/220 (9%)
Query: 198 RELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLP 257
R N + + ++R + L R ++ + + L+ I++ VFL + S + +E F L
Sbjct: 6 RNYYNIEEQQDMKRRVNLDRNQKAA---CTTALIVINIGVFL--VLSVLGATEDSLFMLE 60
Query: 258 LLYGAKINELILVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIY 316
+GA ++ G +++R+ T +FLH G+ H+ + L G + G F +IY
Sbjct: 61 --HGAMYEPYVVEGHQYYRMFTSLFLHFGIEHLLNNMVLLGALGWNLELETGRIKFLIIY 118
Query: 317 TLGGISGNLTSF---LHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQK 371
+ G+ GN+ S + T + V G +G +F ++GA L +N + + + +
Sbjct: 119 FISGLGGNMLSLWMNMSTDKMVVSAGASGAIFGLMGALLCVVLKNHGRVGRLTNRGLLFM 178
Query: 372 AILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
+LS F S VD AH+G G++ GF+ ++
Sbjct: 179 VVLSLYFGFTSSG---VDNAAHIG----GLVCGFVMAAVL 211
>gi|388257684|ref|ZP_10134863.1| rhomboid family protein [Cellvibrio sp. BR]
gi|387938851|gb|EIK45403.1| rhomboid family protein [Cellvibrio sp. BR]
Length = 290
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 264 INELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISG 323
I E + GE WRL+TP+FLH G+FH + + G ++ G + F L + GI+
Sbjct: 137 IGESLSGGELWRLLTPIFLHFGIFHFLFNSLWMWDLGRRLEILQGKWGFLLFVVVTGIAS 196
Query: 324 NLTSFLHTPEPTVGG-TGPVFAIIGAWLIYQFQNKD-LIAKDVSERMFQKAILSTALSFI 381
NLT ++ + GG +G V+A++G + Q N L+A + F L ++ +
Sbjct: 197 NLTQYMWSGSSNFGGMSGVVYALVGFIAVRQRLNPHPLVAVSPALIGFMLVWLVLCMTGV 256
Query: 382 ISNF--GPVDTWAHLGAAFTGIIYGFLT 407
+ F G V AHLG G +Y T
Sbjct: 257 VDYFIAGSVANAAHLGGLVAGAVYALFT 284
>gi|266621088|ref|ZP_06114023.1| rhomboid protease GluP [Clostridium hathewayi DSM 13479]
gi|288867244|gb|EFC99542.1| rhomboid protease GluP [Clostridium hathewayi DSM 13479]
Length = 206
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 15/184 (8%)
Query: 230 LVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELIL-VGEWWRLVTPMFLHSGLF 287
L++++V FLF E N+ F + +GA L++ GE++RL+T +F+H G+
Sbjct: 16 LIALNVLYFLFLEATGSSENTSF-----MVAHGAMYAPLVIERGEYYRLITSVFMHFGIS 70
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL-----HTPEPTVGGTGPV 342
H+ + L G + ++ G + Y + G+ N+ S + + + G +G +
Sbjct: 71 HIMNNMLILFILGDNLERALGHIKYLFFYLICGVGANIVSMIVNLGEYRNVVSAGASGAI 130
Query: 343 FAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
F +IG L N+ + +D+S R I+ + L F ++ G VD AH+ GI+
Sbjct: 131 FGVIGGLLYAVIINRGRL-EDLSTRQLVVMIVCS-LYFGFTSTG-VDNAAHIAGLLIGIV 187
Query: 403 YGFL 406
G L
Sbjct: 188 MGIL 191
>gi|229159403|ref|ZP_04287423.1| Rhomboid [Bacillus cereus R309803]
gi|228624070|gb|EEK80876.1| Rhomboid [Bacillus cereus R309803]
Length = 182
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 20/168 (11%)
Query: 249 SEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYG 308
S+F F L A NE I GEWWRL+T + +H L H + L G + + G
Sbjct: 28 SDFSLFPL-----AAYNEYISKGEWWRLITSLLVHVDLQHFLSNSICLFVLGSSIERQLG 82
Query: 309 PFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGA--WLIY-QFQNKDLIAKD 363
F+F +I+ L GI GNL++++ P + G +G +F ++GA +L+Y ++++ + +D
Sbjct: 83 HFSFIIIFFLSGILGNLSTYIIMPLEYIHAGASGGIFGLLGAHLFLLYSRYRSSN--PRD 140
Query: 364 VSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
+ AI S + FI+ F + A+ + TG+I G + PL+
Sbjct: 141 I-------AIFSIMI-FILLLFTFFNPSANPISHLTGLIIGGICTPLL 180
>gi|395238215|ref|ZP_10416153.1| Possible membrane protein [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477919|emb|CCI86130.1| Possible membrane protein [Lactobacillus gigeriorum CRBIP 24.85]
Length = 230
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
G+WWRL T FLH G+ H+ + + G + G F +Y + GI GNL SF
Sbjct: 53 GQWWRLFTAQFLHIGIMHLVSNAVMIYYLGMFLEPLLGHIRFLAVYLISGIGGNLLSFAL 112
Query: 331 TPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKD------VSERMFQKAILSTALSFII 382
+ ++ G + +F + GA + +N + +S + F A+++ L I
Sbjct: 113 GDDRSISAGASTALFGLFGALIAVGVRNATSVEGSNSLISYISRQAFVLALINIGLDLFI 172
Query: 383 SNFGPVDTWAHLGAAFTG 400
N +D HLG FTG
Sbjct: 173 PN---IDLQGHLGGLFTG 187
>gi|295107889|emb|CBL21842.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Ruminococcus obeum A2-162]
Length = 200
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GE++RL T MFLH G+ H+ + L G ++ + G F +IY +GG+ GN+ S L
Sbjct: 54 GEYYRLFTCMFLHFGIEHLLNNMLVLFVLGSRLERVIGKIKFLIIYLVGGLLGNVISVLV 113
Query: 331 TPEP-----TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF 385
+ + G +G VFA++GA + +NK + + ++ A S F +
Sbjct: 114 ELKSMDFAVSAGASGAVFAVMGAMIYIVVRNKGWLGDLSARQILVMAFFSLYYGFTSTG- 172
Query: 386 GPVDTWAHLGAAFTGII 402
VD AH+ G++
Sbjct: 173 --VDNTAHVAGLVCGMM 187
>gi|357134029|ref|XP_003568622.1| PREDICTED: uncharacterized protein LOC100834911 [Brachypodium
distachyon]
Length = 417
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH- 330
E WRL+T ++LH+G+ H+ + +LL G ++ K +G +Y + G+ G+L S L
Sbjct: 155 EGWRLITCIWLHAGVIHILANMLSLLMIGIRLEKEFGFLRIGTLYVISGVGGSLLSALFM 214
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
+VG +G +F ++G+ L N + + + ++ A++ + VD
Sbjct: 215 VSNISVGASGALFGLLGSMLSELITNWTIYENKFAALL--TLVMIIAINLAVGILPHVDN 272
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNS 421
+AH+G +G GF+ Q G + +NS
Sbjct: 273 FAHIGGFISGFFLGFVLLIRPQFGYINQKNS 303
>gi|392573734|gb|EIW66872.1| hypothetical protein TREMEDRAFT_34153 [Tremella mesenterica DSM
1558]
Length = 528
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 22/186 (11%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFLHT 331
WR V P+FLH G+ H+ L+ A +T G Q+ + G F ++Y GGI G + +F T
Sbjct: 310 WRFVLPIFLHVGIIHLLLNMAAQVTIGAQIEREMGTIPFLMVYMAGGIYGFVLGGNFSRT 369
Query: 332 PEPTVGGTGPVFAI-----IGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
P+VG +G +FAI + L ++++ + K + + + + A+ +I +
Sbjct: 370 GIPSVGASGALFAINACVTVDLGLHWKYEPR---PKLKAFLLLIEFCVGIAIGYIPNA-- 424
Query: 387 PVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFV 446
VD AHLG G++ G + P + S S + +R A P ++ FV
Sbjct: 425 -VDGLAHLGGFAMGLLMGIILYPSI-----SETKSHRNVVWTLRLLALP----LIIVAFV 474
Query: 447 IILGSF 452
+ + +F
Sbjct: 475 LTIRNF 480
>gi|424865430|ref|ZP_18289295.1| rhomboid protease GlpG [SAR86 cluster bacterium SAR86B]
gi|400758698|gb|EJP72900.1| rhomboid protease GlpG [SAR86 cluster bacterium SAR86B]
Length = 206
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
E WRLVTP F+H H+A +C + G + + +G + ++ I NL F T
Sbjct: 60 ELWRLVTPAFIHFSFMHIAFNCLWVYVLGKTIEQIHGAIIYLGLFLFTSILSNLAEFFFT 119
Query: 332 PEPTVGG-TGPVFAIIGAWLIYQFQ-NKDLIAKDVSERMFQKAILSTALSFI----ISNF 385
GG +G V+ +IG ++ + Q NK+L + F AI+ L F + F
Sbjct: 120 GPSLFGGLSGFVYGMIGFVMVNELQLNKELYGLPPAFYFF--AIIWLMLGFFGILELFGF 177
Query: 386 GPVDTWAHLGAAFTGIIY 403
G + +AHLG GIIY
Sbjct: 178 GSIANFAHLGGLIGGIIY 195
>gi|386853198|ref|YP_006271211.1| Rhomboid family member 2 [Actinoplanes sp. SE50/110]
gi|359840702|gb|AEV89143.1| Rhomboid family member 2 [Actinoplanes sp. SE50/110]
Length = 268
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEW+RL T MF+H G+ H+ L+ LL G + GP F +Y L G GN+ +L
Sbjct: 103 GEWYRLFTAMFVHYGVVHLLLNMMVLLQLGRYLEARLGPIRFLALYLLAGFGGNVACYLL 162
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
TP +P+ G + VF +I +I N+ L A DV + +++ +F I+ +
Sbjct: 163 TPQNQPSGGASTAVFGLIIGIIIV---NRKL-ALDV-RSLIPLLVVNVIFTFSIAG---I 214
Query: 389 DTWAHLGAAFTG 400
HLG G
Sbjct: 215 SKEGHLGGLLVG 226
>gi|374604833|ref|ZP_09677783.1| hypothetical protein PDENDC454_17738 [Paenibacillus dendritiformis
C454]
gi|374389541|gb|EHQ60913.1| hypothetical protein PDENDC454_17738 [Paenibacillus dendritiformis
C454]
Length = 199
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
E WRL T MFLHSG H+ + +AL F P + + G F + ++Y L G+ GN + +
Sbjct: 60 ETWRLATAMFLHSGFQHLLFNMFALFVFAPPMERILGSFKYAVLYLLSGLLGNGAALYLS 119
Query: 332 PEPT--VGGTGPVFAIIGAWL-IYQFQNKDLIAKDVSERMFQKAILSTAL--SFIISNFG 386
T VG +G ++ + GA+L I FQ L D + R IL + SF+I+
Sbjct: 120 EWGTLAVGASGAIYGVYGAYLFIAIFQRWAL---DQASRKTIMIILGIGIVQSFVITGI- 175
Query: 387 PVDTW-AHLGAAFTGIIYGFLTCPLVQ 412
+W AHLG G+ GFL ++Q
Sbjct: 176 ---SWSAHLG----GLAAGFLLYAVLQ 195
>gi|223998534|ref|XP_002288940.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976048|gb|EED94376.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 239
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 19/153 (12%)
Query: 261 GAKINELIL-VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GAK LI+ GEW+RL +PM LH+GL H L+ AL G V + +G +I+ +
Sbjct: 26 GAKQTSLIVNQGEWYRLFSPMVLHAGLIHYFLNMMALWFIGKAVEQCHGFAAAAIIFVIP 85
Query: 320 GISGNLTSFLHTPE-PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
+ G + S + PE +VG +G +F +IGA + N L +F K +L L
Sbjct: 86 AVGGTIMSAIFLPEYISVGASGGIFGLIGACIADICINWSL--------LFSKHVLLWLL 137
Query: 379 SFIISN----FGP-VDTWAHLGAAFTGIIYGFL 406
I+ N P VD + HLG G++YGFL
Sbjct: 138 FDIVINCLVGLTPFVDNFTHLG----GMVYGFL 166
>gi|335430608|ref|ZP_08557497.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|335431252|ref|ZP_08558135.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334886957|gb|EGM25302.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334887825|gb|EGM26144.1| rhomboid family protein [Haloplasma contractile SSD-17B]
Length = 214
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 10/146 (6%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCW-ALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL 329
G+++R +T MFLH H+ + + L+ G + G FF++Y L GI+ + +L
Sbjct: 67 GQFYRFLTAMFLHGNFLHILFNMFFGLIILGAALEGLIGSTRFFIVYFLTGIASSYGVYL 126
Query: 330 HTP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP 387
+ TVG +G ++ I+G L K L+ + + + Q IL+ LSF++S
Sbjct: 127 LSGPYTVTVGASGAIYGILGVLLFMIVFKKTLVPYNDRKLIAQLIILNVILSFVLSG--- 183
Query: 388 VDTWAHLGAAFTGIIYGFLTCPLVQL 413
+ HL +G+I GFL PL+ +
Sbjct: 184 ISLEGHL----SGLIAGFLIAPLLMI 205
>gi|401409155|ref|XP_003884026.1| Rhomboid-6, isoform A, related [Neospora caninum Liverpool]
gi|325118443|emb|CBZ53994.1| Rhomboid-6, isoform A, related [Neospora caninum Liverpool]
Length = 646
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 7/160 (4%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHV--ALSCWALLTFGPQVCKSYGPFTFFLIY 316
L G + N + E +RL T M++H G H+ LSC + + + +G + L++
Sbjct: 332 LGGLETNYIREYSETFRLFTSMYMHGGWMHILINLSCQIQILW--IIEPDWGFWRTTLLF 389
Query: 317 TLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 375
LGGISGNL S + P TVG +G ++A++GA + Y + I + +F I+
Sbjct: 390 FLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFM--IVV 447
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
+ + G D +AH+G A GI++GF + V D
Sbjct: 448 VIIGILTGMAGFTDNYAHMGGALGGILWGFASITTVSACD 487
>gi|410672092|ref|YP_006924463.1| rhomboid family protein [Methanolobus psychrophilus R15]
gi|409171220|gb|AFV25095.1| rhomboid family protein [Methanolobus psychrophilus R15]
Length = 287
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 241 EIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFG 300
+I P+ + F FF IN L + W L+T +FLH+G FH+ + L FG
Sbjct: 111 KILEPMGINYFQFFMF-----VPINFL---AQPWTLITHLFLHNGFFHLFFNMMVLFFFG 162
Query: 301 PQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLI 360
P++ + G TF +Y + GI L L T +P +G G AI+G F +I
Sbjct: 163 PELERRAGKATFLRVYFIAGIVAVLGYSLTTSQPNIGVVGASGAIMGV-----FAALAVI 217
Query: 361 AKDVS-------ERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
A ++ R+ IL + F++ G D AH A TGI+ G L
Sbjct: 218 APEIRVYVYFIPMRIVHALILFALVDFLL--IGANDMVAHT-AHLTGILIGLL 267
>gi|388581677|gb|EIM21984.1| rhomboid-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 476
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFLHT 331
+R V P+FLHSG+ H+ ++ +ALL G + G F +++ GI GN+ +F
Sbjct: 281 FRFVLPIFLHSGILHLCINLFALLVLGAYAERVLGSLAFIIVFGAAGIFGNILGGNFAQV 340
Query: 332 PEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSER----MFQKAILSTALSFIISNFGP 387
P+VG +G + +I L+ DL+ ER + I+ + F I
Sbjct: 341 TTPSVGASGAILGLIAVSLV------DLLFHWKLERRPGLLLTIHIIELIVMFFIGYIPN 394
Query: 388 VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFV 446
+D +AH+G G++ P++ S + +T+I + A S+++F +
Sbjct: 395 LDNFAHIGGWLQGLLLSVFFIPVI------SPTKKHRIVTIILRLAALAGSIVLFIVLA 447
>gi|317106731|dbj|BAJ53227.1| JHL06P13.7 [Jatropha curcas]
Length = 311
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 10/194 (5%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GE WR + ++LH+G+ H+ + +LL G + + +G L+Y + G G+L S L
Sbjct: 109 GEAWRFFSCIWLHAGVLHLLTNMISLLFIGIPLEQEFGFLRIGLLYVMSGFGGSLMSAL- 167
Query: 331 TPEP--TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF-IISNFGP 387
+PEP +VG +G +F ++G+ L F N I+ LSF +I +
Sbjct: 168 SPEPNISVGASGALFGLLGSMLSELFLNWTTYVNKCKAVTSLLLIIGLNLSFGLIPH--- 224
Query: 388 VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVI 447
VD AH+G +G + GF+ Q G SR G +I++ P + +F+I
Sbjct: 225 VDNSAHIGGFLSGFLLGFILLMRPQYGYV-SRRYIPAGYDMIKK--KPKHKCYQYLLFII 281
Query: 448 ILGSFIFVFEPPLD 461
+ IF + LD
Sbjct: 282 ASVALIFWYLWGLD 295
>gi|295094297|emb|CBK83388.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Coprococcus sp. ART55/1]
Length = 379
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 269 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF 328
L GE+ RL++ MFLHSG H+ + +AL FG V + G +IY + GI + S
Sbjct: 86 LNGEYGRLISAMFLHSGFDHLFGNMFALYMFGSTVERKLGSLRTTIIYFVSGIVAGIISM 145
Query: 329 --LHTPEP-----TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 381
H +P ++G +G VF II A + F + S + +I+ + +
Sbjct: 146 NVYHMTDPDRMHFSIGASGAVFGIICAAVFLTFMGN----RKASRKDMMVSIVVVVIYAL 201
Query: 382 ISNFGPVDTWAHLGAAFTGIIYGF 405
+N +D +AH+G A G I F
Sbjct: 202 YTNEKNIDIYAHVGGAIVGGILAF 225
>gi|170083865|ref|XP_001873156.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650708|gb|EDR14948.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 332
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 10/154 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT--SFL 329
+W+R VTP+FLH+G+ H+ L+ A +T Q+ K G F L Y GI GN+ +F
Sbjct: 130 QWFRFVTPIFLHAGIIHILLNMLAQITLSAQIEKEMGSGGFLLTYFAAGIFGNVLGGNFS 189
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ--KAILSTALSFI-ISNFG 386
P++G +G +F I + F + + V + +F + ++ A+ +I +F
Sbjct: 190 LVGVPSLGASGAIFGTIAVTWVDLFAHWKYHYRPVRKLIFMTIELLIGIAVGYIPCESF- 248
Query: 387 PVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRN 420
+D +H+G G++ G P++ AS R+
Sbjct: 249 -IDKLSHIGGFVMGLLVGTTLYPVI---SASKRH 278
>gi|409201531|ref|ZP_11229734.1| hypothetical protein PflaJ_09322 [Pseudoalteromonas flavipulchra
JG1]
Length = 344
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 10/161 (6%)
Query: 252 GFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH-VALSCWALLTFGP---QVCKSY 307
GF YG I +LI+ GEWWR++T F HSGL H + +ALL+ GP + +
Sbjct: 180 GFEEAAYRYGG-IYKLIMAGEWWRIITASFFHSGLTHWFSNLAFALLS-GPLFIALVRRT 237
Query: 308 GPFTFFLIYTLGGISGNLTSF--LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVS 365
G F F G IS F L + + G + ++A++G I ++NK++ ++
Sbjct: 238 GLFVFISGCITGAISAYFLYFFGLTSADAYGGISAGIYALLGYITINSYKNKNIKTGNLH 297
Query: 366 ERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
+ +STALS ++S+ + AH+ TG++ FL
Sbjct: 298 ISIVNFLFMSTALSALLSH--SISNTAHISGFITGVLLAFL 336
>gi|433650924|ref|YP_007295926.1| putative membrane protein [Mycobacterium smegmatis JS623]
gi|433300701|gb|AGB26521.1| putative membrane protein [Mycobacterium smegmatis JS623]
Length = 287
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 21/188 (11%)
Query: 217 RTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRL 276
R +T + L++I+V +F+ + SP S+ S + G+W+RL
Sbjct: 67 RQTKTPTPVITYTLIAINVVMFVLQTVSPNLQSDLVLRS----------PSVATGDWYRL 116
Query: 277 VTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EP 334
VT FLH G+ H+ + +AL GP + G F +Y + + G++ +L +P
Sbjct: 117 VTSAFLHYGIAHLLFNMYALYIMGPSLESWLGRLRFSALYAMSALGGSVLVYLLSPLNAA 176
Query: 335 TVGGTGPVFAIIG-AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD-TW- 391
T G +G VF + G A++I + N ++ + + +L+ A +F+I G +W
Sbjct: 177 TAGASGAVFGLFGAAFVIGKRLNLNV------QWVVGLIVLNLAFTFVIPALGGQQISWQ 230
Query: 392 AHLGAAFT 399
H+G T
Sbjct: 231 GHIGGLVT 238
>gi|384049179|ref|YP_005497196.1| hypothetical protein BMWSH_5009 [Bacillus megaterium WSH-002]
gi|345446870|gb|AEN91887.1| Conserved membrane protein YdcA [Bacillus megaterium WSH-002]
Length = 200
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 264 INELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISG 323
+N LI G++WRL TP+FLH H+ + ++L GP + + F L Y G+ G
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGLLG 108
Query: 324 NLTSFL--HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKD 363
N+ +FL + VG +G +F ++G +L + K +++K
Sbjct: 109 NIVTFLIQSSFYSHVGASGAIFGLLGFYLYLVIKQKHMLSKS 150
>gi|222151439|ref|YP_002560595.1| hypothetical protein MCCL_1192 [Macrococcus caseolyticus JCSC5402]
gi|222120564|dbj|BAH17899.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 482
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-L 329
G+++R++T +F+H + H+ + LL FG V Y + + IY +GGI GNL S
Sbjct: 201 GDYYRVITSIFIHFDVQHLLYNMMTLLIFGKLVEYLYPRWQYLCIYFIGGIIGNLISLTF 260
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN--FGP 387
+VG +G + A+IGA + L+ E+ F L F+I + F
Sbjct: 261 DNVSISVGASGAICALIGALM------SHLVFSGKFEKKFLVQTFIGILIFLIGSAIFEN 314
Query: 388 VDTWAHLGAAFTGI 401
V+ +AH G F G+
Sbjct: 315 VNHYAHFGGLFGGM 328
>gi|115486807|ref|NP_001068547.1| Os11g0704800 [Oryza sativa Japonica Group]
gi|62733172|gb|AAX95289.1| Rhomboid family, putative [Oryza sativa Japonica Group]
gi|77552712|gb|ABA95509.1| rhomboid family protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113645769|dbj|BAF28910.1| Os11g0704800 [Oryza sativa Japonica Group]
Length = 374
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL+T ++LH+G+ H+ ++ LL G ++ + +G L+Y + G+ G+L S L
Sbjct: 115 WRLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFVRIGLVYLISGLGGSLMSALFIRS 174
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F +IG+ L N L A V+ + ++ L+ I VD +A
Sbjct: 175 SISVGASGALFGLIGSMLSELITNWSLYANKVAALLTLVFVIVVNLALGI--LPRVDNFA 232
Query: 393 HLGAAFTGIIYGFL 406
H+G +G + GF+
Sbjct: 233 HIGGLISGFLLGFV 246
>gi|313245986|emb|CBY34957.1| unnamed protein product [Oikopleura dioica]
Length = 344
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 22/192 (11%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+ WRL T FLHSGL H+ +C L G + +GP IYTLG I+G + + + T
Sbjct: 139 QLWRLWTYQFLHSGLEHIVGNCIVLGALGIVLELIHGPVRVGAIYTLGVITGGILALVVT 198
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA----ILSTALSFII--SN 384
P + VG +G +A++ A++ N D++ V F ++ +F + +N
Sbjct: 199 PCQSLVGASGGCYALMAAFIANGIMNMDVMDTIVKLLHFLPVSIFLLVDVGYTFYMENTN 258
Query: 385 FGPVDTW-AHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFT 443
G +W AHLG G++ G C L ++S E+ I ++A S++ F+
Sbjct: 259 SGYRVSWAAHLGGVVAGLLAGI--CILKNF----EKSSNEK----ILKWA----SIVGFS 304
Query: 444 IFVIILGSFIFV 455
I + + ++FV
Sbjct: 305 ILFLAIAVYLFV 316
>gi|168024910|ref|XP_001764978.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683787|gb|EDQ70194.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 383
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 19/183 (10%)
Query: 234 DVAVFLFEIASPIR----NSEFGFFSLPLL-YGAKINELI-LVGEWWRLVTPMFLHSGLF 287
+V +F F P + N G ++ LL +GA +EL+ GE WR++T + LH+G+F
Sbjct: 71 NVCIFNFVRRFPFQPLSENPLLGPSAISLLDFGALESELVGRAGEGWRMLTTLSLHAGIF 130
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLHTPEPTVGGTGPVFAI 345
H+ + L G Q+ + +G LIY L G +G L S F+H +VG +G +
Sbjct: 131 HLVGNLAGLFYVGLQLEREFGFLKVMLIYYLAGFAGALASVLFMHG-RVSVGASGATMGL 189
Query: 346 IGAWLIYQFQN----KDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGI 401
IGA L N K VS F L L ++ NF HLG TG
Sbjct: 190 IGARLAEVVMNWNVSKHRTRSIVSTSFFLVGTLVYGLLPLMDNF------MHLGGFLTGS 243
Query: 402 IYG 404
+ G
Sbjct: 244 LLG 246
>gi|51860140|gb|AAU11320.1| rhomboid 4 [Toxoplasma gondii]
Length = 634
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHV--ALSCWALLTFGPQVCKSYGPFTFFLIY 316
L G + N + E +RL T M++H G H+ LSC + + + +G L++
Sbjct: 320 LGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILW--IIEPDWGFLRTTLLF 377
Query: 317 TLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 375
LGGISGNL S + P TVG +G ++A++GA + Y + I + +F I+
Sbjct: 378 FLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFM--IVV 435
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
+ + G D +AH+G A GI++GF + V D
Sbjct: 436 VIIGILTGMAGFTDNYAHMGGALGGILWGFASITTVSACD 475
>gi|320108412|ref|YP_004184002.1| rhomboid family protein [Terriglobus saanensis SP1PR4]
gi|319926933|gb|ADV84008.1| Rhomboid family protein [Terriglobus saanensis SP1PR4]
Length = 280
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 28/205 (13%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLL--YGAKINELILV-GEWWRLVTPMFLHSG 285
+L+ I++AVFL+ R ++ SL L +GA ++L++V G+WWR+++ MF+H G
Sbjct: 46 LLLGINIAVFLWM---GYRGADLRLPSLADLIRFGANNSDLVIVHGQWWRIISAMFVHVG 102
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS------FLHTPEPTVGGT 339
L H+A + W L G G F +Y L G +GNL S + + G +
Sbjct: 103 LIHLATNMWCLWNLGLLGEPLLGFFGMISVYLLSGAAGNLLSIAWDVIWKQHGQVGAGAS 162
Query: 340 GPVFAIIGAWLIYQFQNKDLIAKD--------VSERMFQKAI-------LSTALSFIISN 384
G VF I G LI NK L + R +K++ L+ L+ I +
Sbjct: 163 GAVFGIAGI-LIVLLSNKRLSESRGGRPGIPWMELRALRKSVIQFAGLNLAIGLASIFFD 221
Query: 385 FGPVDTWAHLGAAFTGIIYGFLTCP 409
+D AH+G G+ G P
Sbjct: 222 VVRIDNSAHIGGFVCGLAMGVPLLP 246
>gi|365156793|ref|ZP_09353089.1| hypothetical protein HMPREF1015_01990 [Bacillus smithii 7_3_47FAA]
gi|363626850|gb|EHL77815.1| hypothetical protein HMPREF1015_01990 [Bacillus smithii 7_3_47FAA]
Length = 198
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL++ +F+H G H + L+ F P + F L+Y L GI N +FL
Sbjct: 56 GEWWRLISSIFIHRGFSHFFFNTITLVLFAPPLEIMLKKIKFLLLYLLSGIFANAATFLF 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P +G +G +F + G++ + L+A + +F +++ ++FI + V
Sbjct: 116 MPLTYTHIGSSGAIFGLFGSFAAFLLVKPPLLADHHQKIIFPVVLIALLMTFIQTE---V 172
Query: 389 DTWAHLG----AAFTGIIY 403
+ +HL F GI+Y
Sbjct: 173 NIVSHLAGFACGFFMGILY 191
>gi|282851375|ref|ZP_06260740.1| peptidase, S54 (rhomboid) family protein [Lactobacillus gasseri
224-1]
gi|282557343|gb|EFB62940.1| peptidase, S54 (rhomboid) family protein [Lactobacillus gasseri
224-1]
Length = 241
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 13/168 (7%)
Query: 261 GAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA N+L+ V +WWRL T FLH G H+A + + G + G + F +Y L
Sbjct: 45 GAMNNQLVTVEHQWWRLFTAQFLHIGWLHIASNAVMIYYVGQFMEPLLGHWRFLSVYLLS 104
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKD-VSERMFQKAILST 376
GI GNL S+ + + V G + +F + G + N+ + A + + ++ AI++
Sbjct: 105 GIGGNLLSYAYGSDSVVSAGASTALFGLFGVVIALYLANRAIPAINYLGKQALALAIINL 164
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEE 424
AL S+ +D HLG G+I GFL + G A R +
Sbjct: 165 ALDLFASH---IDILGHLG----GLISGFLLG--IIFGSAHLRQYHHK 203
>gi|256847477|ref|ZP_05552923.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
gi|256716141|gb|EEU31116.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
Length = 220
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GAK LIL G+WWRL+T FLH G+ H+ ++ L G V +G + +IY +
Sbjct: 41 GAKDTPLILQGQWWRLLTAGFLHIGIQHLVINMLTLYFLGMYVETLFGHWRMLVIYLVSV 100
Query: 321 ISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKD-LIAKDVSERMFQKAILS 375
+SGNL S + P +V G + +F + GA+++ +D L+ + ++ + F I +
Sbjct: 101 VSGNLFSMVMQPVNSVSAGASTGLFGLFGAFIMLGIVFRDNLLVRQIARQFFILVIFN 158
>gi|227889556|ref|ZP_04007361.1| S54 family peptidase [Lactobacillus johnsonii ATCC 33200]
gi|227849858|gb|EEJ59944.1| S54 family peptidase [Lactobacillus johnsonii ATCC 33200]
Length = 228
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 261 GAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA N+L+ V +WWRL T FLH G H+A + + G + G + F +Y L
Sbjct: 45 GAMNNQLVTVEHQWWRLFTAQFLHIGWLHIASNAVMIYYMGQFMEPLLGHWRFLTVYLLS 104
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKD-VSERMFQKAILST 376
GI GNL S+ + + V G + +F + G + N+ + A + + ++ AI++
Sbjct: 105 GIGGNLLSYAYGSDSVVSAGASTALFGLFGVVIALYLANRAIPAINYLGKQALTLAIINL 164
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEE 424
AL +S+ ++ HLG G+I GFL + G A R +
Sbjct: 165 ALDLFVSH---INILGHLG----GLISGFLLG--IIFGSAHLRQYHHK 203
>gi|330470718|ref|YP_004408461.1| rhomboid family protein [Verrucosispora maris AB-18-032]
gi|328813689|gb|AEB47861.1| rhomboid family protein [Verrucosispora maris AB-18-032]
Length = 269
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 15/162 (9%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
G+W+RLVT MFLH G+ H+ L+ WAL G + GP F +Y + G GN+ ++
Sbjct: 103 GQWYRLVTAMFLHYGILHLLLNMWALWVLGQSLEAVLGPLRFAALYFIAGFGGNVAVYVF 162
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
+P + + G + +F + A I+ + + +D S + +++ +F + +
Sbjct: 163 SPPNQMSAGASTAIFGLFAA--IFVIMRR--LGRDTSA-ILPILVINLIFTFTVPQ---I 214
Query: 389 DTWAHLGAAFTGIIYGFLTCPLVQLGDASSRN-SQEEGITLI 429
HLG G+++G L ++ S R Q G T+I
Sbjct: 215 SIAGHLG----GLVFGGLMALVLAYAPRSHRTLVQAVGGTVI 252
>gi|125575434|gb|EAZ16718.1| hypothetical protein OsJ_32194 [Oryza sativa Japonica Group]
Length = 253
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRLVT ++LH+G+ H+ + +L+ G ++ + +G +IY + GI G+ L+S
Sbjct: 42 WRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGSVLSSLFIRN 101
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L F N + + ++ A++ I VD +A
Sbjct: 102 SISVGASGALFGLLGAMLSELFTNWTIYTNKAAA--LVTLLIVIAINLAIGILPHVDNFA 159
Query: 393 HLGAAFTGIIYGFL 406
H+G TG + GF+
Sbjct: 160 HIGGFLTGFLLGFI 173
>gi|224054696|ref|XP_002298351.1| predicted protein [Populus trichocarpa]
gi|222845609|gb|EEE83156.1| predicted protein [Populus trichocarpa]
Length = 328
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 15/140 (10%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLHT 331
WRL++ ++LH+G+FHV + +LL G ++ + +G F L+Y + G G+L S F+ T
Sbjct: 115 WRLISCIWLHAGVFHVVANMLSLLLIGIRLEQEFGFFRIGLVYVISGFGGSLLSALFIQT 174
Query: 332 PEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG----- 386
+VG +G +F ++G L N + A + A L+T L I N
Sbjct: 175 -GISVGASGALFGLLGGMLSELITNWTIYAN-------KSAALTTLLCIIAINLAVGLLP 226
Query: 387 PVDTWAHLGAAFTGIIYGFL 406
VD +AH+G +G GF+
Sbjct: 227 HVDNYAHIGGFLSGFFLGFV 246
>gi|221508525|gb|EEE34094.1| rhomboid, putative [Toxoplasma gondii VEG]
Length = 634
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHV--ALSCWALLTFGPQVCKSYGPFTFFLIY 316
L G + N + E +RL T M++H G H+ LSC + + + +G L++
Sbjct: 320 LGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILW--IIEPDWGFLRTTLLF 377
Query: 317 TLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 375
LGGISGNL S + P TVG +G ++A++GA + Y + I + +F I+
Sbjct: 378 FLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFM--IVV 435
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
+ + G D +AH+G A GI++GF + V D
Sbjct: 436 VIIGILTGMAGFTDNYAHMGGALGGILWGFASITTVSACD 475
>gi|221488003|gb|EEE26217.1| rhomboid-like protease 4 [Toxoplasma gondii GT1]
Length = 634
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHV--ALSCWALLTFGPQVCKSYGPFTFFLIY 316
L G + N + E +RL T M++H G H+ LSC + + + +G L++
Sbjct: 320 LGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILW--IIEPDWGFLRTTLLF 377
Query: 317 TLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 375
LGGISGNL S + P TVG +G ++A++GA + Y + I + +F I+
Sbjct: 378 FLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFM--IVV 435
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
+ + G D +AH+G A GI++GF + V D
Sbjct: 436 VIIGILTGMAGFTDNYAHMGGALGGILWGFASITTVSACD 475
>gi|339452024|ref|ZP_08655394.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc lactis KCTC 3528]
Length = 124
Score = 62.8 bits (151), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVG-EWWRLVTPMFLHSGLFH 288
LV+I +A+F+ E+ + G L + GAK I + ++WRL+TP+FLH+G H
Sbjct: 18 LVAISLAMFVVEVIMGHGQTTNG--QLLVALGAKWGPAIAIDHQYWRLLTPIFLHAGWLH 75
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP 332
+ + L GP ++G F +Y GG+ GN+ S+L P
Sbjct: 76 IITNMLTLWFIGPLAEAAFGHRKFLGLYLFGGVVGNIMSYLFAP 119
>gi|312077777|ref|XP_003141452.1| rhomboid family protein [Loa loa]
Length = 989
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 12/184 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+W+RL P+FLH+G+ H L+ + + + + K G L+Y + GI G L +
Sbjct: 782 QWYRLFIPLFLHAGIIHCILTVFIQMLYMRDLEKLLGWARVALLYMVPGIGGYLAGAIFV 841
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P +P VG G + A + + +L+ + M Q ++ + A+ F + VD
Sbjct: 842 PYKPEVGPAGSHVGMFAAMYVDVVYSWNLLERPWHAIM-QLSLFTVAV-FAVGTLPWVDN 899
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
WAH GI+ P +Q N I +I + IVF +FV++L
Sbjct: 900 WAHFFGFIFGILVSLAVLPYIQ---TKHHNRARRLIIVITSLS------IVFGLFVVLLT 950
Query: 451 SFIF 454
F +
Sbjct: 951 MFYW 954
>gi|257867689|ref|ZP_05647342.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257874016|ref|ZP_05653669.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257876595|ref|ZP_05656248.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257801772|gb|EEV30675.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257808180|gb|EEV37002.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257810761|gb|EEV39581.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 222
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 267 LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT 326
++ + E+WR VTP+FLH GL H A++ L G QV YG FF +Y L GI GN
Sbjct: 46 VVYLNEYWRFVTPIFLHFGLAHFAINSVILYYMGQQVEAIYGHSRFFALYLLSGIMGNTM 105
Query: 327 SFL--HTPEPTVGGTGPVFAIIGAWLI--YQFQNKDLIAKDVSERMFQKAILSTALSFII 382
SF + G + +F + GA+LI + F+N I + M ++ L L+ +
Sbjct: 106 SFAFNQIGVQSAGASTSLFGLFGAFLILGWHFRNDYRI-----QAMVRQFALFVGLNLVF 160
Query: 383 SNFG-PVDTW 391
F +D W
Sbjct: 161 GVFDQTIDMW 170
>gi|367470265|ref|ZP_09469978.1| Rhomboid family protein [Patulibacter sp. I11]
gi|365814662|gb|EHN09847.1| Rhomboid family protein [Patulibacter sp. I11]
Length = 254
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G L+ GE WRLVT FLHSGL H+ + L G ++ + G F F L+Y
Sbjct: 67 GVLFGPLVHDGELWRLVTGGFLHSGLLHIGFNMLLLYWLGTEIERRLGSFRFGLVYLTAL 126
Query: 321 ISGNLTSFLH-TPEPTVGGTGPVFAIIGAWLI 351
+ G+L + + T PTVG +G VF ++G L+
Sbjct: 127 LGGSLGALVQTTATPTVGASGAVFGLMGYALV 158
>gi|224369448|ref|YP_002603612.1| putative rhomboid-family protein (ventrhoid transmembrane protein)
[Desulfobacterium autotrophicum HRM2]
gi|223692165|gb|ACN15448.1| putative rhomboid-family protein (ventrhoid transmembrane protein)
[Desulfobacterium autotrophicum HRM2]
Length = 239
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 16/203 (7%)
Query: 215 LQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVG--- 271
+Q+ T +L ++ ++ ++VA+F+ +A R + + +N LI +G
Sbjct: 2 MQKERITPDL-VVKYIIYVNVALFVASLALSGREIQISLNPFTA-FSPSMNALIFLGATG 59
Query: 272 --------EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISG 323
EWW L++ +LH L H+ + AL+ P + +YG IY +GG G
Sbjct: 60 TIPIDHYHEWWSLISANWLHGSLVHILFNMTALVQIAPLIIHAYGISRMLAIYAIGGTLG 119
Query: 324 NLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIS 383
S+L T+G + + A+IGA L + K V ++ + + +I
Sbjct: 120 FYLSYLAGVGVTIGASAAICALIGAALYFGKSRGGDFGKAVYKQTTGWVVSLAVIGLLIP 179
Query: 384 NFGPVDTWAHLGAAFTGIIYGFL 406
+ ++ W H G GI G+L
Sbjct: 180 S---INNWGHGGGVVAGIFLGWL 199
>gi|125623059|ref|YP_001031542.1| rhomboid-related protein 1 [Lactococcus lactis subsp. cremoris
MG1363]
gi|389853384|ref|YP_006355628.1| membrane-associated serine protease [Lactococcus lactis subsp.
cremoris NZ9000]
gi|124491867|emb|CAL96788.1| Rhomboid-related protein 1 [Lactococcus lactis subsp. cremoris
MG1363]
gi|300069806|gb|ADJ59206.1| membrane-associated serine protease [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 230
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL+T F+H G HV L+ L G Q+ +G F LIY L GI GN FL TP+
Sbjct: 63 WRLLTANFIHIGWAHVLLNVATLFFIGRQIENVFGWLRFTLIYLLSGIFGNAMVFLLTPQ 122
Query: 334 -PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+ G + +F + A + + K + + RMF I++ + + S G V WA
Sbjct: 123 VVSAGASTSLFGLFAAVVGLAYFTKHPFLQQIG-RMFTVLIVANLVMNLFS-LGNVSIWA 180
Query: 393 HLGAAFTGIIYGFLTCP 409
H+G A G++ + P
Sbjct: 181 HIGGAIGGLLLSVILPP 197
>gi|325571108|ref|ZP_08146680.1| S54 family peptidase [Enterococcus casseliflavus ATCC 12755]
gi|420263998|ref|ZP_14766633.1| S54 family peptidase [Enterococcus sp. C1]
gi|325156193|gb|EGC68379.1| S54 family peptidase [Enterococcus casseliflavus ATCC 12755]
gi|394768897|gb|EJF48774.1| S54 family peptidase [Enterococcus sp. C1]
Length = 222
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 267 LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT 326
++ + E+WR VTP+FLH GL H A++ L G QV YG FF +Y L GI GN
Sbjct: 46 VVYLNEYWRFVTPIFLHFGLAHFAINSVILYYMGQQVEAIYGHSRFFALYLLSGIMGNTM 105
Query: 327 SFL--HTPEPTVGGTGPVFAIIGAWLI--YQFQNKDLIAKDVSERMFQKAILSTALSFII 382
SF + G + +F + GA+LI + F+N I + M ++ L L+ +
Sbjct: 106 SFAFNQIGVQSAGASTSLFGLFGAFLILGWHFRNDYRI-----QAMVRQFALFVGLNLVF 160
Query: 383 SNFG-PVDTW 391
F +D W
Sbjct: 161 GVFDQTIDMW 170
>gi|224122384|ref|XP_002318821.1| predicted protein [Populus trichocarpa]
gi|222859494|gb|EEE97041.1| predicted protein [Populus trichocarpa]
Length = 298
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRL++ ++LH+G+ H+ + +L+ G ++ + +G ++Y L G G+ L+S
Sbjct: 89 WRLISCIWLHAGIIHLLANMLSLVFIGIRLEQQFGFVRIGIVYLLSGFGGSVLSSLFIRN 148
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L N I + + +F ++ TA++ I VD +A
Sbjct: 149 SISVGASGALFGLLGAMLSELITNWS-IYTNKTAALFTLLVI-TAINLAIGILPRVDNFA 206
Query: 393 HLGAAFTGIIYGFLTCPLVQLGDASSRN 420
H+G +G + GF+ P Q G RN
Sbjct: 207 HIGGFLSGFLLGFVLLPRSQYGWQGRRN 234
>gi|42519493|ref|NP_965423.1| hypothetical protein LJ1618 [Lactobacillus johnsonii NCC 533]
gi|385826288|ref|YP_005862630.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|417837977|ref|ZP_12484215.1| GlpG protein [Lactobacillus johnsonii pf01]
gi|41583781|gb|AAS09389.1| hypothetical protein LJ_1618 [Lactobacillus johnsonii NCC 533]
gi|329667732|gb|AEB93680.1| hypothetical protein LJP_1358c [Lactobacillus johnsonii DPC 6026]
gi|338761520|gb|EGP12789.1| GlpG protein [Lactobacillus johnsonii pf01]
Length = 228
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 261 GAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA N+L+ V +WWRL T FLH G H+A + + G + G + F +Y L
Sbjct: 45 GAMNNQLVTVEHQWWRLFTAQFLHIGWLHIASNAVMIYYMGQFMEPLLGHWRFLTVYLLS 104
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKD-VSERMFQKAILST 376
GI GNL S+ + + V G + +F + G + N+ + A + + + AI++
Sbjct: 105 GIGGNLLSYAYGSDSVVSAGASTALFGLFGVVIALYLANRAIPAINYLGRQALALAIINL 164
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEE 424
AL S+ +D HLG G+I GFL + G A R +
Sbjct: 165 ALDLFASH---IDILGHLG----GLISGFLLG--IIFGSAHLRQYHHK 203
>gi|22122915|gb|AAM92298.1| putative membrane protein [Oryza sativa Japonica Group]
Length = 329
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRLVT ++LH+G+ H+ + +L+ G ++ + +G +IY + GI G+ L+S
Sbjct: 118 WRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGSVLSSLFIRN 177
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L F N + + ++ A++ I VD +A
Sbjct: 178 SISVGASGALFGLLGAMLSELFTNWTIYTNKAAA--LVTLLIVIAINLAIGILPHVDNFA 235
Query: 393 HLGAAFTGIIYGFL 406
H+G TG + GF+
Sbjct: 236 HIGGFLTGFLLGFI 249
>gi|393912104|gb|EFO22618.2| rhomboid family protein [Loa loa]
Length = 1003
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 12/184 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+W+RL P+FLH+G+ H L+ + + + + K G L+Y + GI G L +
Sbjct: 796 QWYRLFIPLFLHAGIIHCILTVFIQMLYMRDLEKLLGWARVALLYMVPGIGGYLAGAIFV 855
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P +P VG G + A + + +L+ + M Q ++ + A+ F + VD
Sbjct: 856 PYKPEVGPAGSHVGMFAAMYVDVVYSWNLLERPWHAIM-QLSLFTVAV-FAVGTLPWVDN 913
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
WAH GI+ P +Q N I +I + IVF +FV++L
Sbjct: 914 WAHFFGFIFGILVSLAVLPYIQ---TKHHNRARRLIIVITSLS------IVFGLFVVLLT 964
Query: 451 SFIF 454
F +
Sbjct: 965 MFYW 968
>gi|336435773|ref|ZP_08615487.1| hypothetical protein HMPREF0988_01072 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336000268|gb|EGN30420.1| hypothetical protein HMPREF0988_01072 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 207
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 73/153 (47%), Gaps = 13/153 (8%)
Query: 260 YGAKINELILVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
+GA +L G E +RLVT MFLH G+ H+ + L G + G F LIY
Sbjct: 39 HGAMYAPYVLEGKEDYRLVTSMFLHFGMQHLLNNMVMLGALGWNLEAVTGKIRFILIYMF 98
Query: 319 GGISGNLTSFLHTPEPTV-----GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI 373
GI GNL S V G +G VF ++GA L +N+ + + +F
Sbjct: 99 SGIGGNLLSLFLNRNSGVYVVSAGASGAVFGLMGALLFAAIRNRGHVGRVSRRGLFFMVA 158
Query: 374 LSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
LS L F +S+ G VD AH+G G+I GFL
Sbjct: 159 LS--LYFGLSSSG-VDNAAHIG----GLICGFL 184
>gi|227515651|ref|ZP_03945700.1| S54 family peptidase [Lactobacillus fermentum ATCC 14931]
gi|227086081|gb|EEI21393.1| S54 family peptidase [Lactobacillus fermentum ATCC 14931]
Length = 221
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 18/210 (8%)
Query: 230 LVSIDVAVFLFE-IASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
LV + V V+L E +A NS + L GA + G+WWR+ T FLH GL H
Sbjct: 14 LVGVCVLVYLLEELAGGATNS-----ATLLNLGANYGPFVRAGQWWRVFTAAFLHIGLTH 68
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-LHTPEPTVGGTGPVFAIIG 347
+ L+ L G + + G +IY + + GNL S +H + G + +F + G
Sbjct: 69 LFLNMMVLYYLGRTIEELTGHLRMAVIYLVSILMGNLVSVAVHPVTISAGASTGIFGLFG 128
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFL 406
A+L F + + ++ ++ ++ + P +D + HLG G++ GFL
Sbjct: 129 AFL---FMGSEFRQYPALRGLARQYLILVIINLVYDLIAPGIDIFGHLG----GLVGGFL 181
Query: 407 TCPLV---QLGDASSRNSQEEGITLIRQYA 433
C LV LG+ R G L+ +
Sbjct: 182 ACALVGVPTLGEIHLRKRFLGGTILVLGFV 211
>gi|115372709|ref|ZP_01460015.1| peptidase, S54 (rhomboid) family, putative [Stigmatella aurantiaca
DW4/3-1]
gi|115370190|gb|EAU69119.1| peptidase, S54 (rhomboid) family, putative [Stigmatella aurantiaca
DW4/3-1]
Length = 520
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 260 YGAKINELIL-VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
+GAK+ L+ GE WRLVT FLH HV L+ LL G + ++ + + +
Sbjct: 45 FGAKVGPLMTEAGEPWRLVTANFLHRDGAHVGLNMLVLLAVGWVLEGTWRRWDYAAVLVA 104
Query: 319 GGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
G+S S L E +VG +G + +G ++ +++ +++ ++ RM + +L T L
Sbjct: 105 SGLSTMTASLLWAEEVSVGASGMAYGCVGGLIVLGRRHRAVLSP-LARRMAGEGVLPTVL 163
Query: 379 SFIISNF--GPVDTWAHLGAAFTGIIYGFLTCP 409
F+ + VD HLG G+ G P
Sbjct: 164 VFLWMGWTSAGVDNAGHLGGFVAGLWAGVFLVP 196
>gi|377831625|ref|ZP_09814595.1| hypothetical protein LBLM1_08570 [Lactobacillus mucosae LM1]
gi|377554419|gb|EHT16128.1| hypothetical protein LBLM1_08570 [Lactobacillus mucosae LM1]
Length = 220
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GA+ LI GEWWRL+TP F+H GL H+ ++ L G + +G + F IY +
Sbjct: 40 FGARYTPLIKAGEWWRLITPGFVHIGLTHLVVNSVTLYFIGMYIENLFGHWRFLAIYLVS 99
Query: 320 GISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKD 358
+ GNL S + P+ + G + +F + GA+L+ D
Sbjct: 100 TLMGNLASAVFLPQSISAGASTGIFGLFGAFLMLGLAFWD 139
>gi|315038824|ref|YP_004032392.1| hypothetical protein LA2_08440 [Lactobacillus amylovorus GRL 1112]
gi|325957263|ref|YP_004292675.1| hypothetical protein LAC30SC_08175 [Lactobacillus acidophilus 30SC]
gi|385818055|ref|YP_005854445.1| hypothetical protein LAB52_07605 [Lactobacillus amylovorus GRL1118]
gi|312276957|gb|ADQ59597.1| hypothetical protein LA2_08440 [Lactobacillus amylovorus GRL 1112]
gi|325333828|gb|ADZ07736.1| hypothetical protein LAC30SC_08175 [Lactobacillus acidophilus 30SC]
gi|327183993|gb|AEA32440.1| hypothetical protein LAB52_07605 [Lactobacillus amylovorus GRL1118]
Length = 226
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 261 GAKINELILVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA N ++VG +WWRL T FLH G+ H+ + + G + G F + Y L
Sbjct: 43 GAMSNYAVVVGNQWWRLFTAQFLHIGVMHLVSNAVIIYYMGQYIEPIMGHARFLVTYLLA 102
Query: 320 GISGNLTSFLHTPEP--TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
GI GNL S + + + G + +F + GA +N I + + ++A +
Sbjct: 103 GIGGNLMSLAFSSDRGLSAGASTALFGLFGAMTAIGLRN---IHNPMISFLGRQAFVLAL 159
Query: 378 LSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
++ I F P +D W HLG G+I GFL V LGD
Sbjct: 160 INLGIDIFAPGIDIWGHLG----GLIVGFLLA--VILGD 192
>gi|74786304|sp|Q695T8.1|RHBL4_TOXGO RecName: Full=Rhomboid-like protease 4
gi|47500379|gb|AAT29067.1| rhomboid-like protease 4 [Toxoplasma gondii]
Length = 641
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 8/160 (5%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHV--ALSCWALLTFGPQVCKSYGPFTFFLIY 316
L G + N + E +RL T M++H G H+ LSC + + + +G L++
Sbjct: 328 LGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILW--IIEPDWGFLRTTLLF 385
Query: 317 TLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 375
LGGISGNL S + P TVG +G ++A++GA + Y + I + +F ++
Sbjct: 386 FLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFMIVVI- 444
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
+ + G D +AH+G A GI++GF + V D
Sbjct: 445 --IGILTGMAGFTDNYAHMGGALGGILWGFASITTVSACD 482
>gi|313884239|ref|ZP_07818005.1| peptidase, S54 family [Eremococcus coleocola ACS-139-V-Col8]
gi|312620686|gb|EFR32109.1| peptidase, S54 family [Eremococcus coleocola ACS-139-V-Col8]
Length = 229
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
E+WR+++ F+H G+ H+ + L GP++ + G F LIY + GI GNLTS
Sbjct: 55 EYWRILSATFVHIGMSHLLFNMMTLYFMGPELEEILGHIKFLLIYLIAGIGGNLTSLAFN 114
Query: 332 PEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA---ILSTALSFIISNFGP- 387
+ G + +F + A+++ + D S ++Q++ I+ L+ + P
Sbjct: 115 TGVSAGASTALFGMFAAFIVLAIIHPD------SHYLWQRSRSFIILVGLNLVNGFLSPG 168
Query: 388 VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLI 429
+D W HLG G+++G L ++ S + G+ +
Sbjct: 169 IDNWGHLG----GLLFGALATYVIGSKGKSKAKLWQRGLVAV 206
>gi|242056443|ref|XP_002457367.1| hypothetical protein SORBIDRAFT_03g006170 [Sorghum bicolor]
gi|241929342|gb|EES02487.1| hypothetical protein SORBIDRAFT_03g006170 [Sorghum bicolor]
Length = 338
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLH 330
E WRL+T ++LH+G+ H+ + +LL G ++ K +G +Y + G+ G+ L+S
Sbjct: 159 EGWRLITCIWLHAGVIHILANMLSLLMIGIRLEKEFGFIRIGTLYVISGVGGSLLSSLFM 218
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAK-DVSERMFQKAILSTALSFIISNFG--- 386
+VG +G +F ++G+ L +LI + E F A L T + I+ N
Sbjct: 219 VSNISVGASGALFGLLGSML------SELITNWTIYENKF--AALLTLVMIIVINLAVGI 270
Query: 387 --PVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNS 421
VD +AHLG +G GF+ Q G + +NS
Sbjct: 271 LPHVDNFAHLGGFMSGFCLGFVLLIRPQFGYINQKNS 307
>gi|358061502|ref|ZP_09148156.1| hypothetical protein HMPREF9473_00218 [Clostridium hathewayi
WAL-18680]
gi|356700261|gb|EHI61767.1| hypothetical protein HMPREF9473_00218 [Clostridium hathewayi
WAL-18680]
Length = 206
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 15/189 (7%)
Query: 225 YLISILVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELILV-GEWWRLVTPMFL 282
Y+ +L++I+V F+F E+ NS F + +GA L+ GE++RL+T +F+
Sbjct: 11 YINILLIAINVLYFIFLEMTGSSENSLF-----MIQHGAMYEPLVTENGEYYRLLTSIFM 65
Query: 283 HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF---LHTPEPTV--G 337
H G+ H+ + L G + ++ G + Y + G+ N+ S + E V G
Sbjct: 66 HFGINHIVNNMLMLFILGDNMERALGHIKYLFFYLICGVGANIASMTVNVMNKELVVSAG 125
Query: 338 GTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAA 397
+G +F +IG L+Y +D+S R IL + L F ++ G VD AH+
Sbjct: 126 ASGAIFGVIGG-LLYAVAVNHGRLEDLSTRQLVVVILCS-LYFGFTS-GGVDNVAHIAGL 182
Query: 398 FTGIIYGFL 406
GI+ L
Sbjct: 183 LIGIVMAML 191
>gi|118346243|ref|XP_976851.1| Rhomboid family protein [Tetrahymena thermophila]
gi|89288367|gb|EAR86355.1| Rhomboid family protein [Tetrahymena thermophila SB210]
Length = 298
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 6/181 (3%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
++ R + MFL + H+ +S LL FG V G FLIY +GG SG L S L +
Sbjct: 103 QFERFIGSMFLFANFKHILVSLVCLLVFGSYVEALIGFKKMFLIYIIGGYSGTLVSCLMS 162
Query: 332 PEPTVGGTGPVFAIIG---AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P V GT PV + +G +L+ ++ D ++ + TA+ + F V
Sbjct: 163 DSPGVDGTNPVASFLGVLFGFLLIKWDKWDYPGSGRTQMLMILMFGLTAIFTLGYIFTLV 222
Query: 389 DTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVII 448
DT A +G+ G+++ F + + D + S + I I+Q K F++F+II
Sbjct: 223 DTLAMVGSLLIGVLFIF---GVFEEADDNRYASNDSYIAKIKQQNENNKCSRYFSLFLII 279
Query: 449 L 449
Sbjct: 280 F 280
>gi|302776526|ref|XP_002971421.1| hypothetical protein SELMODRAFT_172130 [Selaginella moellendorffii]
gi|300160553|gb|EFJ27170.1| hypothetical protein SELMODRAFT_172130 [Selaginella moellendorffii]
Length = 379
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL++ M+LH+G+ H+ + LL G ++ + +G L+Y L G G+L S L +
Sbjct: 119 WRLISCMWLHAGVLHLLANMICLLLIGIRLEREFGFVKIGLLYLLSGFGGSLLSALFIQD 178
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA + N + + ++ + I+ L+ + VD +A
Sbjct: 179 RISVGASGALFGLLGAMVSELITNWSIYSNKIAALITLVIIIGINLA--VGILPHVDNFA 236
Query: 393 HLGAAFTGIIYGFLTCPLVQLG 414
H+G +G + GF+ QLG
Sbjct: 237 HIGGFVSGFLLGFVLLMRPQLG 258
>gi|376244587|ref|YP_005134826.1| hypothetical protein CDHC01_0025 [Corynebacterium diphtheriae HC01]
gi|372107217|gb|AEX73278.1| putative membrane protein [Corynebacterium diphtheriae HC01]
Length = 205
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP 332
W R+V +FLHSG H+AL+ + L FG ++ G F L Y + GI + T L P
Sbjct: 66 WLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMDP 125
Query: 333 -EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
PTVG +G V+ ++ ++ ++ + +D++ + A+ + S ++ V W
Sbjct: 126 LAPTVGASGAVYGLMAIFVAMSYRLR----RDLTAPLILIAV-NVGYSLLMDG---VSLW 177
Query: 392 AHLGAAFTGIIYGFL 406
HLG TG + G +
Sbjct: 178 GHLGGLLTGCVLGIV 192
>gi|448112251|ref|XP_004202049.1| Piso0_001522 [Millerozyma farinosa CBS 7064]
gi|359465038|emb|CCE88743.1| Piso0_001522 [Millerozyma farinosa CBS 7064]
Length = 578
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+W+R+VTP+FLH+G H+ + T G + + G +FLIY GI+G L +
Sbjct: 332 QWYRIVTPIFLHAGFIHIIFNLLLQTTMGATIERHIGFIKYFLIYMPSGIAGFLLGSNFS 391
Query: 332 PE--PTVGGTGPVFAIIGAWLIYQF----QNKDLIAKDVSERMFQKAILSTALSFIISNF 385
P+ + G +G +F I+ A LI +N ++ + +SF++
Sbjct: 392 PDGIASTGASGALFGILAADLIMFIYCGRKNTNIYGTKKFGLFLTFLVAEIIISFVLGLL 451
Query: 386 GPVDTWAHLGAAFTGIIYGFLTCP 409
+D ++H+G GI+ + P
Sbjct: 452 PGMDNFSHIGGFAMGILTSVVLIP 475
>gi|357053297|ref|ZP_09114395.1| hypothetical protein HMPREF9467_01367 [Clostridium clostridioforme
2_1_49FAA]
gi|355385874|gb|EHG32920.1| hypothetical protein HMPREF9467_01367 [Clostridium clostridioforme
2_1_49FAA]
Length = 206
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 13/183 (7%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINE-LILVGEWWRLVTPMFLHSGLFH 288
L +++ VFL+ I ++E G F + +GA +IL GE++RL T MFLH G+ H
Sbjct: 16 LAAVNALVFLY--LEAIGSTEDGVFMVK--HGAVFAPFVILGGEYYRLFTAMFLHFGVSH 71
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF---LHTPEPTV--GGTGPVF 343
+A + LL G ++ K+ G + + Y G++ N S + T +V G +G +F
Sbjct: 72 LANNMLVLLVLGEKMEKALGHIKYLIFYLASGVAANGISLAVQVRTGAASVSAGASGAIF 131
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIY 403
++G L+Y ++ R +L T S VD AH+G +G I
Sbjct: 132 GVVGG-LVYVIAIHHGQLDGLTNRQLGFMVLLTLYHGFTST--GVDNVAHIGGLISGFIL 188
Query: 404 GFL 406
G L
Sbjct: 189 GIL 191
>gi|389627590|ref|XP_003711448.1| rhomboid family membrane protein [Magnaporthe oryzae 70-15]
gi|351643780|gb|EHA51641.1| rhomboid family membrane protein [Magnaporthe oryzae 70-15]
gi|440465662|gb|ELQ34973.1| rhomboid family membrane protein [Magnaporthe oryzae Y34]
gi|440480579|gb|ELQ61238.1| rhomboid family membrane protein [Magnaporthe oryzae P131]
Length = 558
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFL 329
+W+R +TP+F+H+GL H+ + LT G ++ ++ G FFL+Y GI G + ++
Sbjct: 297 QWFRFITPIFMHAGLIHIGFNMLLQLTLGREMEQAIGSIRFFLVYMSAGIFGFVLGGNYA 356
Query: 330 HTPEPTVGGTGPVFAIIGAWLI---YQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 386
P+ G +G +F +I LI Y ++++ KD+ +F L A+SF++
Sbjct: 357 GAGTPSTGASGSLFGVIALTLIDLLYSWKDRKNPVKDL---LF--IFLDIAISFVLGLLP 411
Query: 387 PVDTWAHL 394
+D ++H+
Sbjct: 412 GLDNFSHI 419
>gi|432868050|ref|XP_004071386.1| PREDICTED: inactive rhomboid protein 1-like [Oryzias latipes]
Length = 860
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +IY L GI+GNL S +
Sbjct: 657 QFYRLWLSLFLHAGILHCLVSVVFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 716
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F I+ + FQ+ ++A+ R F K + FI +D
Sbjct: 717 PYRAEVGPAGSQFGILACLFVELFQSWQILAE--PWRAFIKLLCVVIFLFIFGLLPWIDN 774
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
+AH+ +G F P + G + Y C+ ++ +FV +
Sbjct: 775 FAHISGFISGFFLSFAFLPYISFGR-------------MDLYRKRCQIIVFLLVFVGLFS 821
Query: 451 SFIFVF 456
+ +F
Sbjct: 822 GLVVLF 827
>gi|375289754|ref|YP_005124294.1| hypothetical protein CD241_0025 [Corynebacterium diphtheriae 241]
gi|371579425|gb|AEX43092.1| putative membrane protein [Corynebacterium diphtheriae 241]
Length = 204
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP 332
W R+V +FLHSG H+AL+ + L FG ++ G F L Y + GI + T L P
Sbjct: 65 WLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMDP 124
Query: 333 -EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
PTVG +G V+ ++ ++ ++ + +D++ + A+ + S ++ V W
Sbjct: 125 LAPTVGASGAVYGLMAIFVAMSYRLR----RDLTAPLILIAV-NVGYSLLMDG---VSLW 176
Query: 392 AHLGAAFTGIIYGFL 406
HLG TG + G +
Sbjct: 177 GHLGGLLTGCVLGIV 191
>gi|302765296|ref|XP_002966069.1| hypothetical protein SELMODRAFT_84059 [Selaginella moellendorffii]
gi|300166883|gb|EFJ33489.1| hypothetical protein SELMODRAFT_84059 [Selaginella moellendorffii]
Length = 335
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL++ M+LH+G+ H+ + LL G ++ + +G L+Y L G G+L S L +
Sbjct: 83 WRLISCMWLHAGVLHLLANMICLLLIGIRLEREFGFVKIGLLYLLSGFGGSLLSALFIQD 142
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA + N + + ++ + I+ L+ + VD +A
Sbjct: 143 RISVGASGALFGLLGAMVSELITNWSIYSNKIAALITLVIIIGINLA--VGILPHVDNFA 200
Query: 393 HLGAAFTGIIYGFLTCPLVQLG 414
H+G +G + GF+ QLG
Sbjct: 201 HIGGFVSGFLLGFVLLMRPQLG 222
>gi|300361225|ref|ZP_07057402.1| S54 family peptidase [Lactobacillus gasseri JV-V03]
gi|300353844|gb|EFJ69715.1| S54 family peptidase [Lactobacillus gasseri JV-V03]
Length = 228
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 13/168 (7%)
Query: 261 GAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA N+L+ V +WWRL T FLH G H+A + + G + G + F +Y L
Sbjct: 45 GAMNNQLVTVEHQWWRLFTAQFLHIGWLHIASNAVMIYYIGQFMEPLLGHWRFLSVYLLS 104
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKD-VSERMFQKAILST 376
GI GNL S+ + + V G + +F + G + N+ + A + + ++ AI++
Sbjct: 105 GIGGNLLSYAYGSDSVVSAGASTALFGLFGVVIALYLANRAIPAINYLGKQALALAIINL 164
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEE 424
AL S+ +D HLG G+I GFL + G A R +
Sbjct: 165 ALDLFASH---IDILGHLG----GLISGFLLG--IIFGSAHLRQYHHK 203
>gi|125532680|gb|EAY79245.1| hypothetical protein OsI_34361 [Oryza sativa Indica Group]
Length = 332
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRLVT ++LH+G+ H+ + +L+ G ++ + +G +IY + GI G+ L+S
Sbjct: 121 WRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGSVLSSLFIRN 180
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L F N + + + ++ A++ I VD +A
Sbjct: 181 SISVGASGALFGLLGAMLSELFTNWTIYTNKAAALV--TLLIVIAINLAIGILPHVDNFA 238
Query: 393 HLGAAFTGIIYGFL 406
H+G TG + GF+
Sbjct: 239 HIGGFLTGFLLGFI 252
>gi|326803846|ref|YP_004321664.1| S8/S53 family peptidase [Aerococcus urinae ACS-120-V-Col10a]
gi|326650087|gb|AEA00270.1| peptidase, S54 family [Aerococcus urinae ACS-120-V-Col10a]
Length = 221
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 23/159 (14%)
Query: 262 AKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
AK N LI + G++WRL+TP+F+H G H+ + L G +V G + F IY G
Sbjct: 39 AKENALIAIYGQYWRLLTPIFVHIGFSHLLFNSITLWYLGSEVEGIIGSWRFLFIYLYSG 98
Query: 321 ISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA-------- 372
I GNL S+ + + G + +F + +L ++ N +R FQ
Sbjct: 99 IMGNLFSYQFSTSVSAGASTALFGLFAFFLAMRYLNPH-------DRYFQAMGYQYQTLI 151
Query: 373 ILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
IL+ ++ ++N VD H+G GI+ GFL ++
Sbjct: 152 ILNIIMNLFMAN---VDMSGHIG----GIVGGFLATLII 183
>gi|337749638|ref|YP_004643800.1| rhomboid family protein [Paenibacillus mucilaginosus KNP414]
gi|379722538|ref|YP_005314669.1| rhomboid family protein [Paenibacillus mucilaginosus 3016]
gi|386725303|ref|YP_006191629.1| rhomboid family protein [Paenibacillus mucilaginosus K02]
gi|336300827|gb|AEI43930.1| rhomboid family protein [Paenibacillus mucilaginosus KNP414]
gi|378571210|gb|AFC31520.1| rhomboid family protein [Paenibacillus mucilaginosus 3016]
gi|384092428|gb|AFH63864.1| rhomboid family protein [Paenibacillus mucilaginosus K02]
Length = 214
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS-FLHTP 332
WR VT +F+H G H+ + +AL F + + G + + L Y L GI+GNL S +LH
Sbjct: 61 WRYVTAIFIHIGFQHLLFNSFALYVFAAPLERLLGKWKYLLFYLLCGIAGNLASAWLHGD 120
Query: 333 EPT-VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDT 390
G +G ++ + A+L +DLI D + + + I + FI S P VD
Sbjct: 121 YYIGAGASGAIYGVYAAFLYLSVFRRDLI--DYATKQTVRTI--VIVGFIYSIVVPRVDM 176
Query: 391 WAHLGAAFTGIIYGFLTCPLVQL 413
+AH G F G G L C L+ L
Sbjct: 177 YAH-GGGFVG---GLLICALMSL 195
>gi|224008324|ref|XP_002293121.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971247|gb|EED89582.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 257
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 261 GAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GAK + LI+ E WRLV+PM LH+G+ H L+ +AL G + + +G F + + +
Sbjct: 32 GAKESYLIVQENEIWRLVSPMVLHAGVIHFLLNMFALWYVGKAIEQIHGFFPAVVQFVVP 91
Query: 320 GISGNLTSFLHTPE-PTVGGTGPVFAIIGAWLIYQFQNKDLIAKD-VSE---RMFQKAIL 374
+ G + S + PE TVG +G +F +IGA + N +L+ + V+E R+ +L
Sbjct: 92 AVGGTILSAIFLPEYITVGASGGIFGLIGACISDIVMNWNLLFNEFVNERGVRLSHARVL 151
Query: 375 STALSFIISN----FGP-VDTWAHLGAAFTGIIYGFLTCPLVQ---LGDASSR 419
I+ N P VD + HLG G + G T LV GD R
Sbjct: 152 VVLFLDIVVNCLVGLTPFVDNFTHLGGMILGFLCGLSTIQLVSPRFFGDERQR 204
>gi|404425001|ref|ZP_11006516.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403649659|gb|EJZ05001.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 240
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 33/209 (15%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++++V +F+ ++AS R +E P + +++RLVT FLH G+ H+
Sbjct: 33 LIAVNVLMFVLQMASGDRLTEELTLWAP--------GIAFYDQYYRLVTSAFLHYGVMHL 84
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGPVFAIIG 347
+ WAL GP + + G + +Y L + G++ +L TP PT G +G +F + G
Sbjct: 85 LFNMWALYVVGPPLEQWLGRLRYGALYALSALGGSVLVYLLTPINTPTAGASGAIFGLFG 144
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-----VDTW-AHLGAAFT-- 399
A I+ K ++ RM ++ ++ + + GP +W H+G T
Sbjct: 145 A--IFVVARK----LNLDVRMIAAVVI---INLVFTFAGPALGTGAISWQGHIGGLITGA 195
Query: 400 GIIYGFLTCPLVQLGDASSRNSQEEGITL 428
GI ++ P ++ RN+ + G+++
Sbjct: 196 GIAAAYVYAP------SARRNAVQAGVSV 218
>gi|326430143|gb|EGD75713.1| hypothetical protein PTSG_07830 [Salpingoeca sp. ATCC 50818]
Length = 628
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 19/186 (10%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+W+RL T +F+H+G + + G Q+ G FL+Y + G+ G + + +
Sbjct: 430 QWFRLFTSLFIHAGAIQLVIIMSIQWYAGRQIETQAGFLRTFLVYFISGVGGTTIAAIFS 489
Query: 332 PEPTVGGTGP-VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P G P V+ ++G L+ Q L+ K + + AI+ A ++ +D
Sbjct: 490 PNLVTTGANPAVYGLLGCVLVELLQTWQLLEKPWLQLLKLVAII--AFLLLVGTLPFLDN 547
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
W+H+G G++ G + P + G+ K L+ F F +++G
Sbjct: 548 WSHVGGFAFGVVAGIVFLPYITFGEWDVAR----------------KRLLFFVCFPLLIG 591
Query: 451 SFIFVF 456
FI F
Sbjct: 592 MFIAAF 597
>gi|116511000|ref|YP_808216.1| membrane-associated serine protease [Lactococcus lactis subsp.
cremoris SK11]
gi|385837184|ref|YP_005874814.1| GlpG protein [Lactococcus lactis subsp. cremoris A76]
gi|414073474|ref|YP_006998691.1| Intramembrane serine protease, rhomboid family [Lactococcus lactis
subsp. cremoris UC509.9]
gi|116106654|gb|ABJ71794.1| Membrane-associated serine protease [Lactococcus lactis subsp.
cremoris SK11]
gi|358748412|gb|AEU39391.1| GlpG protein [Lactococcus lactis subsp. cremoris A76]
gi|413973394|gb|AFW90858.1| Intramembrane serine protease, rhomboid family [Lactococcus lactis
subsp. cremoris UC509.9]
Length = 230
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL+T F+H G HV L+ L G Q+ +G F LIY L GI GN FL TP+
Sbjct: 63 WRLLTANFIHIGWAHVLLNVATLFFIGRQIENVFGWLRFTLIYLLSGIFGNAMVFLLTPQ 122
Query: 334 -PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+ G + +F + A + + K + + RMF I++ + + S G V WA
Sbjct: 123 VVSAGASTSLFGLFAAVVGLAYFTKHPFLQQIG-RMFTVLIVANLVMNLFS-LGNVSIWA 180
Query: 393 HLGAAFTGII 402
H+G A G++
Sbjct: 181 HIGGAIGGLL 190
>gi|407708174|ref|YP_006831759.1| alpha-glucosidase [Bacillus thuringiensis MC28]
gi|407385859|gb|AFU16360.1| Rhomboid [Bacillus thuringiensis MC28]
Length = 190
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
FF P+ A NE I GEWWR++T + +H L H + L G + K G +F
Sbjct: 30 FFLFPM---AANNEYITKGEWWRVITSLLVHVDLQHFLSNSICLFILGSSIEKQLGHISF 86
Query: 313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ 370
+++ L GISGN+ S++ P + G +G +F ++GA L + N+ + +F
Sbjct: 87 IILFFLPGISGNIASYIIMPPEYIHAGASGGIFGLLGAQL-FLLYNRYRPSHSKEIAIFS 145
Query: 371 KAILSTALSFIISNFGP-VDTWAHLGAAFT-GIIYGFLT 407
IL L + F P + +HL T GI+ FLT
Sbjct: 146 IMILILLL---FTFFNPFANPISHLAGLITGGILTPFLT 181
>gi|237832509|ref|XP_002365552.1| rhomboid-like protease 4 [Toxoplasma gondii ME49]
gi|211963216|gb|EEA98411.1| rhomboid-like protease 4 [Toxoplasma gondii ME49]
Length = 664
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 8/160 (5%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHV--ALSCWALLTFGPQVCKSYGPFTFFLIY 316
L G + N + E +RL T M++H G H+ LSC + + + +G L++
Sbjct: 351 LGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILW--IIEPDWGFLRTTLLF 408
Query: 317 TLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 375
LGGISGNL S + P TVG +G ++A++GA + Y + I + +F ++
Sbjct: 409 FLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFMIVVI- 467
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
+ + G D +AH+G A GI++GF + V D
Sbjct: 468 --IGILTGMAGFTDNYAHMGGALGGILWGFASITTVSACD 505
>gi|30693911|ref|NP_850698.1| RHOMBOID-like protein 4 [Arabidopsis thaliana]
gi|332645622|gb|AEE79143.1| RHOMBOID-like protein 4 [Arabidopsis thaliana]
Length = 394
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 8/197 (4%)
Query: 254 FSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFF 313
+L + G + +++ E WRL++ +LH G+ H+ ++ LL G ++ + +G
Sbjct: 120 LTLQTMGGLDVKKVVKGDEGWRLLSCNWLHGGVVHLLMNMLTLLFIGIRMEREFGFIRIG 179
Query: 314 LIYTLGGISGNLTSFLH-TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA 372
L+Y + G G++ S L +VG +G VF ++G L F N + + V
Sbjct: 180 LLYLISGFGGSILSALFLRSNISVGASGAVFGLLGGMLSEIFINWTIYSNKVVT--IVTL 237
Query: 373 ILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQY 432
+L A++ + VD +AH+G TG + GF+ G + RN + Y
Sbjct: 238 VLIVAVNLGLGVLPGVDNFAHIGGFATGFLLGFVLLIRPHYGWINQRNGPGAKPHRFKIY 297
Query: 433 ANPCKSLIVFTIFVIIL 449
I++TI ++IL
Sbjct: 298 QG-----ILWTISLLIL 309
>gi|419861887|ref|ZP_14384511.1| hypothetical protein W5M_11313 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387981722|gb|EIK55267.1| hypothetical protein W5M_11313 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 205
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP 332
W R+V +FLHSG H+AL+ + L FG ++ G F L Y + GI + T L P
Sbjct: 66 WLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMDP 125
Query: 333 -EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
PTVG +G V+ ++ ++ ++ + +D++ + A+ + S ++ V W
Sbjct: 126 LAPTVGASGAVYGLMAIFVAMSYRLR----RDLTAPLILIAV-NVGYSLLMDG---VSLW 177
Query: 392 AHLGAAFTGIIYGFL 406
HLG TG + G +
Sbjct: 178 GHLGGLLTGCVLGIV 192
>gi|38232669|ref|NP_938436.1| hypothetical protein DIP0027 [Corynebacterium diphtheriae NCTC
13129]
gi|376253148|ref|YP_005141607.1| hypothetical protein CDPW8_0020 [Corynebacterium diphtheriae PW8]
gi|376256043|ref|YP_005143934.1| hypothetical protein CDVA01_0025 [Corynebacterium diphtheriae VA01]
gi|376286557|ref|YP_005159123.1| hypothetical protein CDBH8_0029 [Corynebacterium diphtheriae BH8]
gi|376292146|ref|YP_005163820.1| hypothetical protein CDHC02_0028 [Corynebacterium diphtheriae HC02]
gi|38198927|emb|CAE48538.1| Putative membrane protein [Corynebacterium diphtheriae]
gi|371583891|gb|AEX47556.1| putative membrane protein [Corynebacterium diphtheriae BH8]
gi|372109469|gb|AEX75529.1| putative membrane protein [Corynebacterium diphtheriae HC02]
gi|372116232|gb|AEX68702.1| putative membrane protein [Corynebacterium diphtheriae PW8]
gi|372118560|gb|AEX82294.1| putative membrane protein [Corynebacterium diphtheriae VA01]
Length = 205
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP 332
W R+V +FLHSG H+AL+ + L FG ++ G F L Y + GI + T L P
Sbjct: 66 WLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMDP 125
Query: 333 -EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
PTVG +G V+ ++ ++ ++ + +D++ + A+ + S ++ V W
Sbjct: 126 LAPTVGASGAVYGLMAIFVAMSYRLR----RDLTAPLILIAV-NVGYSLLMDG---VSLW 177
Query: 392 AHLGAAFTGIIYGFL 406
HLG TG + G +
Sbjct: 178 GHLGGLLTGCVLGIV 192
>gi|222616447|gb|EEE52579.1| hypothetical protein OsJ_34868 [Oryza sativa Japonica Group]
Length = 864
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 13/149 (8%)
Query: 264 INELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISG 323
+ +++ + WRL+T ++LH+G+ H+ ++ LL G ++ + +G L+Y + G+ G
Sbjct: 105 VTKVVHGHQGWRLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFVRIGLVYLISGLGG 164
Query: 324 NLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 382
+L S L +VG +G +F +IG+ L N L A V A L T + I+
Sbjct: 165 SLMSALFIRSSISVGASGALFGLIGSMLSELITNWSLYANKV-------AALLTLVFVIV 217
Query: 383 SNFG-----PVDTWAHLGAAFTGIIYGFL 406
N VD +AH+G +G + GF+
Sbjct: 218 VNLALGILPRVDNFAHIGGLISGFLLGFV 246
>gi|310823474|ref|YP_003955832.1| hypothetical protein STAUR_6248 [Stigmatella aurantiaca DW4/3-1]
gi|309396546|gb|ADO74005.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 557
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 260 YGAKINELIL-VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
+GAK+ L+ GE WRLVT FLH HV L+ LL G + ++ + + +
Sbjct: 82 FGAKVGPLMTEAGEPWRLVTANFLHRDGAHVGLNMLVLLAVGWVLEGTWRRWDYAAVLVA 141
Query: 319 GGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
G+S S L E +VG +G + +G ++ +++ +++ ++ RM + +L T L
Sbjct: 142 SGLSTMTASLLWAEEVSVGASGMAYGCVGGLIVLGRRHRAVLSP-LARRMAGEGVLPTVL 200
Query: 379 SFIISNF--GPVDTWAHLGAAFTGIIYGFLTCP 409
F+ + VD HLG G+ G P
Sbjct: 201 VFLWMGWTSAGVDNAGHLGGFVAGLWAGVFLVP 233
>gi|218186222|gb|EEC68649.1| hypothetical protein OsI_37086 [Oryza sativa Indica Group]
Length = 773
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 13/149 (8%)
Query: 264 INELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISG 323
+ +++ + WRL+T ++LH+G+ H+ ++ LL G ++ + +G L+Y + G+ G
Sbjct: 105 VTKVVHGHQGWRLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFVRIGLVYLISGLGG 164
Query: 324 NLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 382
+L S L +VG +G +F +IG+ L N L A V A L T + I+
Sbjct: 165 SLMSALFIRSSISVGASGALFGLIGSMLSELITNWSLYANKV-------AALLTLVFVIV 217
Query: 383 SNFG-----PVDTWAHLGAAFTGIIYGFL 406
N VD +AH+G +G + GF+
Sbjct: 218 VNLALGILPRVDNFAHIGGLISGFLLGFV 246
>gi|404492680|ref|YP_006716786.1| rhomboid-like membrane protein [Pelobacter carbinolicus DSM 2380]
gi|77544761|gb|ABA88323.1| rhomboid-related membrane protein [Pelobacter carbinolicus DSM
2380]
Length = 267
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 7/151 (4%)
Query: 266 ELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL 325
E+++ +WWR +T + H GL H+ + L GP + G FF++YT ++ L
Sbjct: 91 EVLVFHQWWRCLTYAYTHGGLMHLGFNMVVLYQVGPLIEDHIGSARFFILYTFTALTATL 150
Query: 326 TSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN 384
L P P VG +G +F +IG + Y F A V MFQ A A++FI
Sbjct: 151 LGLLWHPLVPVVGASGSLFGLIGFAVAY-FHRLGNHAHTVRNFMFQWA----AIAFIFGL 205
Query: 385 FGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
D HLG A G ++G L PL + G+
Sbjct: 206 IMGADNAGHLGGAIGGAVFGLL-LPLGKRGN 235
>gi|398408343|ref|XP_003855637.1| hypothetical protein MYCGRDRAFT_68129 [Zymoseptoria tritici IPO323]
gi|339475521|gb|EGP90613.1| hypothetical protein MYCGRDRAFT_68129 [Zymoseptoria tritici IPO323]
Length = 496
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G +++ +WWR + P+FLH+G+ H+A + LT G V K G F ++Y G
Sbjct: 233 GGSLDDQPAPDQWWRFIVPIFLHAGIIHIAFNLLLQLTLGRDVEKLVGSIRFAILYFAAG 292
Query: 321 ISGNL--TSFLHTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVSERMFQKAILS 375
I G + +F T + G +G +F I+ L+Y ++ + KD+ MF ++
Sbjct: 293 IFGFVLGGNFAATGIASTGCSGSLFGILAITLLDLLYTWKERTSPVKDL---MF--ILVD 347
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYG 404
++F + +D ++H+G G++ G
Sbjct: 348 MVIAFALGLLPGLDNFSHIGGFLMGLVLG 376
>gi|417800856|ref|ZP_12447962.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
gi|334277580|gb|EGL95806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
Length = 289
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G ++ ++ GEW+R+VT MFLH H+ ++ +L FG V G + +Y + G
Sbjct: 190 GGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAG 249
Query: 321 ISGNLTSF-LHTPEPTVGGTGPVFAIIGAW--LIYQFQN 356
+ GN S +T +VG +G +F +IG+ ++Y ++N
Sbjct: 250 LFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVYKN 288
>gi|297746062|emb|CBI16118.3| unnamed protein product [Vitis vinifera]
Length = 316
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 10/179 (5%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRL++ ++LH+G+FHV + +L+ G ++ + +G L+Y + G G+ L+S
Sbjct: 57 WRLISCIWLHAGVFHVLANMLSLVFIGIRLEQEFGFVRIGLLYVVSGFGGSMLSSLFIQS 116
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++G L N + A + + I+ L+ I VD +A
Sbjct: 117 SISVGASGALFGLLGGMLSELITNWTIYANKFAALLTLILIIIVNLAVGI--LPHVDNFA 174
Query: 393 HLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGIT-------LIRQYANPCKSLIVFTI 444
H+G +G + GF+ Q G S RN+ I + QY SLI+ T+
Sbjct: 175 HIGGFVSGFLLGFVFLIRPQFGWVSQRNASPGHIAPSVKPKHKMYQYVLWVMSLILLTV 233
>gi|365904247|ref|ZP_09442006.1| membrane-associated serine protease [Lactobacillus versmoldensis
KCTC 3814]
Length = 223
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%)
Query: 260 YGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
+GAKIN L+ G+WWRL TP+FLH G+ H+ + L G + G F +I+ L
Sbjct: 40 FGAKINYLVQDGDWWRLFTPIFLHIGVLHILTNGVTLYFVGTILEPLIGHVRFLVIFLLS 99
Query: 320 GISGNLTSF 328
GI+GNL SF
Sbjct: 100 GITGNLASF 108
>gi|442770468|gb|AGC71182.1| rhomboid family serine protease [uncultured bacterium A1Q1_fos_568]
Length = 247
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
++++I+VA +L + S + + +G +GA L+ GEWWRL+T FLH+G+ H
Sbjct: 39 VIIAINVAAWL--LLSLVGRNPYGAVGAVYEHGALFGPLVAQGEWWRLLTGGFLHAGIMH 96
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGTGPVFAIIG 347
+ ++ L ++ + G F ++Y + + G L L +P PTVG +G VF ++G
Sbjct: 97 LGMNMLMLWFLSQELEPALGRLRFAVLYVVSLLGGALGVLLLSPVSPTVGASGAVFGLLG 156
Query: 348 AWLIYQFQNKD 358
A ++ Q + +
Sbjct: 157 ALVVLQLRARQ 167
>gi|402814790|ref|ZP_10864383.1| hypothetical protein PAV_3c01280 [Paenibacillus alvei DSM 29]
gi|402507161|gb|EJW17683.1| hypothetical protein PAV_3c01280 [Paenibacillus alvei DSM 29]
Length = 197
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 19/186 (10%)
Query: 228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
++L+ +V +F+ + S NSE F +GA E + E WR+ + MFLH G
Sbjct: 20 TLLIIANVIMFIVLLISGGTNSENLF-----RHGAIYKETPYIQETWRMASAMFLHGGFE 74
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPT--VGGTGPVFAI 345
H+ + +AL F P + K G F + ++Y G+ GN + + T VG +G ++ I
Sbjct: 75 HLLFNMFALFVFAPPLEKMMGSFKYAVLYICSGLLGNAAALWLSEWGTLAVGASGAIYGI 134
Query: 346 IGAWL-IYQFQNKDLIAKDVSERMFQKAILSTAL--SFIISNFGPVDTW-AHLGAAFTGI 401
GA+L I F+ + L D + R IL + SF+I +W AHLG G
Sbjct: 135 YGAYLFIALFRRQTL---DEASRSTLLIILGIGIVQSFVIQGI----SWSAHLGGLAAGF 187
Query: 402 -IYGFL 406
+YG L
Sbjct: 188 AVYGIL 193
>gi|376250196|ref|YP_005137077.1| hypothetical protein CDHC03_0028 [Corynebacterium diphtheriae HC03]
gi|372111700|gb|AEX77759.1| putative membrane protein [Corynebacterium diphtheriae HC03]
Length = 205
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP 332
W R+V +FLHSG H+AL+ + L FG ++ G F L Y + GI + T L P
Sbjct: 66 WLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMDP 125
Query: 333 -EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
PTVG +G V+ ++ ++ ++ + +D++ + A+ + S ++ V W
Sbjct: 126 LAPTVGASGAVYGLMAIFVAMSYRLR----RDLTAPLILIAV-NVGYSLLMDG---VSLW 177
Query: 392 AHLGAAFTGIIYGFL 406
HLG TG + G +
Sbjct: 178 GHLGGLLTGCVLGIV 192
>gi|356507686|ref|XP_003522595.1| PREDICTED: inactive rhomboid protein 1-like [Glycine max]
Length = 368
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL T FLH+GLFH+ L+ +++ G + +GP +IY L G+L + L
Sbjct: 106 WRLFTFPFLHAGLFHLLLNLSSVIYVGVNLEHHFGPIRIGIIYALSAFVGSLVASLFLQN 165
Query: 334 -PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
P VG +G ++ ++G L N + +S + +F++ VD +A
Sbjct: 166 IPAVGASGALYGLLGTLLSELVWNWKFHSNKISA--IASLVFVFVCNFVLGFLPYVDNFA 223
Query: 393 HLGAAFTGIIYG--FLTCPLVQ 412
+G +G + G FL CP +Q
Sbjct: 224 SMGGFISGFLLGSVFLLCPQIQ 245
>gi|386384848|ref|ZP_10070191.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
gi|385667692|gb|EIF91092.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
Length = 299
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 225 YLIS-ILVSIDVAVFLFEIASPIR-NSEFGFFSLPLLYGAKINELILV--GEWWRLVTPM 280
+LI+ IL+ I++AVF+ +A R E L Y + E++ + G+W+RL+T +
Sbjct: 85 FLITKILIGINLAVFVAVLALGDRFVDEMSLIGLA--YSPLLGEVVGLADGQWYRLLTSV 142
Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP---TVG 337
FLH L H+A + AL G V + G F ++Y L G+ G++ +L + EP T+G
Sbjct: 143 FLHQDLSHIAFNMLALWFLGRMVEPALGRSRFLVLYLLSGLGGDVFVYLLS-EPNQATIG 201
Query: 338 GTGPVFAIIGAW-LIYQFQNKDL 359
+G +F ++GA+ ++ + N DL
Sbjct: 202 ASGAIFGLVGAFAVLLRRMNLDL 224
>gi|375292001|ref|YP_005126540.1| hypothetical protein CDB402_0026 [Corynebacterium diphtheriae INCA
402]
gi|376241724|ref|YP_005132576.1| hypothetical protein CDCE8392_0024 [Corynebacterium diphtheriae
CDCE 8392]
gi|376289234|ref|YP_005161481.1| hypothetical protein CDC7B_0026 [Corynebacterium diphtheriae C7
(beta)]
gi|371581672|gb|AEX45338.1| putative membrane protein [Corynebacterium diphtheriae INCA 402]
gi|372102630|gb|AEX66227.1| putative membrane protein [Corynebacterium diphtheriae C7 (beta)]
gi|372104966|gb|AEX71028.1| putative membrane protein [Corynebacterium diphtheriae CDCE 8392]
Length = 214
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP 332
W R+V +FLHSG H+AL+ + L FG ++ G F L Y + GI + T L P
Sbjct: 75 WLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMDP 134
Query: 333 -EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
PTVG +G V+ ++ ++ ++ + +D++ + A+ + S ++ V W
Sbjct: 135 LAPTVGASGAVYGLMAIFVAMSYRLR----RDLTAPLILIAV-NVGYSLLMDG---VSLW 186
Query: 392 AHLGAAFTGIIYGFL 406
HLG TG + G +
Sbjct: 187 GHLGGLLTGCVLGIV 201
>gi|149199790|ref|ZP_01876820.1| Rhomboid-like protein [Lentisphaera araneosa HTCC2155]
gi|149137078|gb|EDM25501.1| Rhomboid-like protein [Lentisphaera araneosa HTCC2155]
Length = 454
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 25/214 (11%)
Query: 200 LRNKDGVRSLERDLALQRTEETSNLYL------------ISILVSIDVAVFLF----EIA 243
NKD + L L LQ+ + S ++ ++++++++ VF E
Sbjct: 76 FENKDEAKDLMSYLPLQKEAQESQSFMQNLDFSAKKTPVTTVIIALNIIVFFLMYGIEKL 135
Query: 244 SPIRNSEFGFFSLPLLYGA-KINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ 302
+ I+ F + +G+ +I E I E WRL T F+H GL H+A + + L G
Sbjct: 136 NIIQPKNLDVF---IQWGSNRIFETI--DEPWRLFTCAFIHFGLLHIACNMYFLHAIGRL 190
Query: 303 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLI 360
K GP +F+IY +G+L S L + + G +G VF ++G + +D +
Sbjct: 191 SEKLLGPRFYFIIYIFSAFTGSLASLLWNSDGVISAGASGAVFGVVGMVGAFLVMRRDDV 250
Query: 361 AKDVSERMFQKAILSTALSFIISNFGP-VDTWAH 393
+ + + L+F+ P +D AH
Sbjct: 251 PPTAFKNLKNSMVQIVVLNFLFGTLVPGIDNAAH 284
>gi|147818034|emb|CAN64890.1| hypothetical protein VITISV_021082 [Vitis vinifera]
Length = 391
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 263 KINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGIS 322
++++++ + WRL++ ++LH+G+FHV + +L+ G ++ + +G L+Y + G
Sbjct: 121 EVSKVVHRHQVWRLISCIWLHAGVFHVLANMLSLVFIGIRLEQEFGFVRIGLLYVVSGFG 180
Query: 323 GN-LTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 381
G+ L+S +VG +G +F ++G L N + A + + I+ L+
Sbjct: 181 GSMLSSLFIQSSISVGASGALFGLLGGMLSELITNWTIYANKFAALLTLILIIIVNLA-- 238
Query: 382 ISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITL-------IRQYAN 434
+ VD +AH+G +G + GF+ Q G S RN+ I + QY
Sbjct: 239 VGILPHVDNFAHIGGFVSGFLLGFVFLIRPQFGWVSQRNASPGHIAXSVKPKHKMYQYVL 298
Query: 435 PCKSLIVFTI 444
SLI+ T+
Sbjct: 299 WVMSLILLTV 308
>gi|226494277|ref|NP_001151264.1| membrane protein [Zea mays]
gi|195645390|gb|ACG42163.1| membrane protein [Zea mays]
Length = 414
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLH 330
E WRL+T ++LH+G+ H+ + +LL G ++ K +G +Y + G+ G+ L+S
Sbjct: 152 EGWRLITCIWLHAGVVHILANMLSLLMIGIRLEKEFGFIRIGTLYVISGVGGSLLSSLFM 211
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAK-DVSERMFQKAILSTALSFIISNFG--- 386
+VG +G +F ++G+ L +LI + E F A L T + I+ N
Sbjct: 212 VSNISVGASGALFGLLGSML------SELITNWTIYENKF--AALLTLVMIILINLAVGI 263
Query: 387 --PVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNS 421
VD +AHLG +G GF+ Q G + +NS
Sbjct: 264 LPHVDNFAHLGGFMSGFCLGFVLLMRPQFGYINQKNS 300
>gi|376247391|ref|YP_005139335.1| hypothetical protein CDHC04_0024 [Corynebacterium diphtheriae HC04]
gi|372113959|gb|AEX80017.1| putative membrane protein [Corynebacterium diphtheriae HC04]
Length = 205
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP 332
W R+V +FLHSG H+AL+ + L FG ++ G F L Y + GI + T L P
Sbjct: 66 WLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMDP 125
Query: 333 -EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
PTVG +G V+ ++ ++ ++ + +D++ + A+ + S ++ V W
Sbjct: 126 LAPTVGASGAVYGLMAIFVAMSYRLR----RDLTAPLILIAV-NVGYSLLMDG---VSLW 177
Query: 392 AHLGAAFTGIIYGFL 406
HLG TG + G +
Sbjct: 178 GHLGGLLTGCVLGIV 192
>gi|116630012|ref|YP_815184.1| membrane-associated serine protease [Lactobacillus gasseri ATCC
33323]
gi|311110357|ref|ZP_07711754.1| putative small hydrophobic molecule transporter protein
[Lactobacillus gasseri MV-22]
gi|116095594|gb|ABJ60746.1| Membrane-associated serine protease [Lactobacillus gasseri ATCC
33323]
gi|311065511|gb|EFQ45851.1| putative small hydrophobic molecule transporter protein
[Lactobacillus gasseri MV-22]
Length = 228
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 13/168 (7%)
Query: 261 GAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA N+L+ V +WWRL T FLH G H+A + + G + G + F +Y L
Sbjct: 45 GAMNNQLVTVEHQWWRLFTAQFLHIGWLHIASNAVMIYYVGQFMEPLLGHWRFLSVYLLS 104
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKD-VSERMFQKAILST 376
GI GNL S+ + + V G + +F + G + N+ + A + + ++ AI++
Sbjct: 105 GIGGNLLSYAYGSDSVVSAGASTALFGLFGVVIALYLANRAIPAINYLGKQALALAIINL 164
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEE 424
AL S+ +D HLG G+I GFL + G A R +
Sbjct: 165 ALDLFASH---IDILGHLG----GLISGFLLG--IIFGSAHLRQYHHK 203
>gi|170290879|ref|YP_001737695.1| rhomboid family protein [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174959|gb|ACB08012.1| Rhomboid family protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 227
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 32/196 (16%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGE----WWRLVTPMFLHSG 285
L++I+V VF+ E +SP S L+ G L +G +RL+T +FLH G
Sbjct: 20 LIAINVMVFILESSSPELMSS-------LISGYGFTPLAFIGRPLSNSYRLITSIFLHGG 72
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-----TSFLHTP--EPTVGG 338
H+ + L FG V + G + + Y GIS N +SFL P P VG
Sbjct: 73 WIHLIGNMLYLFIFGDNVEAALGRINYLIFYLFSGISANFAHMIASSFLGMPLDLPAVGA 132
Query: 339 TGPVFAIIGAWLIYQFQNKDLIA---------KDVSERMFQKAILSTALSFIISNFGP-- 387
+G + I+GA+LI+ + + + + +S + F I L I G
Sbjct: 133 SGAISGILGAYLIFYPRARIITVILLGYLVTLRPISAKYFL--IFWFILQLIPGILGEAV 190
Query: 388 -VDTWAHLGAAFTGII 402
V WAH+G GI+
Sbjct: 191 GVAYWAHIGGFLVGIV 206
>gi|336430826|ref|ZP_08610764.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336016582|gb|EGN46362.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 209
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVC-KSYGPFTFFLIYTLGGISGNLTSFLH 330
E++RLVT MFLH+ + H+ ++ LL FG ++ K+ G + +++ + GI GNL + +
Sbjct: 58 EYYRLVTAMFLHADISHL-VNNMILLYFGGEIVEKTIGSVRYLVLFFVSGICGNLLTAIF 116
Query: 331 TPEP-----TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF 385
++G +G VF +IG L+Y + A +S R + IL ALS + S F
Sbjct: 117 EVSTGMYFNSIGASGAVFGLIGG-LLYLVITRKGYAAQISVR---RMILMIALS-LYSGF 171
Query: 386 GP--VDTWAHLGAAFTGIIYGFLTCPL 410
V+ AHLG +G + F+ C +
Sbjct: 172 QSVRVNNAAHLGGLLSGFLITFILCHI 198
>gi|313244135|emb|CBY14983.1| unnamed protein product [Oikopleura dioica]
Length = 313
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 22/192 (11%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+ WRL T FLHSGL H+ +C L G + +GP IYTLG I+G + + + T
Sbjct: 108 QLWRLWTYQFLHSGLEHIVGNCIVLGALGIVLELIHGPVRVGAIYTLGVITGGILALVVT 167
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA----ILSTALSFII--SN 384
P + VG +G +A++ A++ N D++ V F ++ +F + +N
Sbjct: 168 PCQSLVGASGGCYALMAAFIANGIMNMDVMDTIVKLLHFLPVSIFLLVDVGYTFYMENTN 227
Query: 385 FGPVDTW-AHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFT 443
G +W AHLG G++ G C L ++S E+ I ++A S++ F+
Sbjct: 228 SGYRVSWAAHLGGVVAGLLAG--ICILKNF----EKSSNEK----ILKWA----SIVGFS 273
Query: 444 IFVIILGSFIFV 455
I + + ++FV
Sbjct: 274 ILFLAIAVYLFV 285
>gi|259046463|ref|ZP_05736864.1| small hydrophobic molecule transporter protein [Granulicatella
adiacens ATCC 49175]
gi|259036879|gb|EEW38134.1| small hydrophobic molecule transporter protein [Granulicatella
adiacens ATCC 49175]
Length = 232
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 260 YGAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
+GAK N I+ E++R +TP+FLH GL H+ + L G Q+ G + F ++Y L
Sbjct: 52 FGAKFNPYIIYQHEYYRFLTPIFLHIGLEHILFNSVFLYMIGRQMEYEIGHWRFLVVYLL 111
Query: 319 GGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA---ILS 375
GI GNL SF + + G + +F ++GA + K + + Q A +++
Sbjct: 112 SGIMGNLASFAFSSSISAGASTALFGLMGA--VVYLSRKHGYIRSFRQMGMQYAGLIVIN 169
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
L FI S VD + HLG G++ G+L
Sbjct: 170 IVLGFINS---AVDNYGHLG----GLVGGYLVM 195
>gi|384495876|gb|EIE86367.1| hypothetical protein RO3G_11078 [Rhizopus delemar RA 99-880]
Length = 396
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL--HT 331
+RLV P+F+H+G+ H ++ L G + K+ G + L+Y GI G + S +
Sbjct: 197 FRLVLPIFMHAGIIHFLVNMLTHLRLGVDLEKALGTPRYALLYMASGIWGFVLSAMLSQN 256
Query: 332 PEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
+ G +G +F +IG I N ++ V R ++ST +S ++ +D +
Sbjct: 257 LSASTGCSGALFGLIGYMFIDVLVNWKILPHPV--RNLMNLLMSTVISLVLGLLPGLDNF 314
Query: 392 AHLGAAFTGIIYGFLTCPL 410
AH+G GI+ G L P+
Sbjct: 315 AHIGGFTVGILMGMLVAPM 333
>gi|376283529|ref|YP_005156739.1| hypothetical protein CD31A_0026 [Corynebacterium diphtheriae 31A]
gi|371577044|gb|AEX40712.1| putative membrane protein [Corynebacterium diphtheriae 31A]
Length = 205
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 273 WWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP 332
W R+V +FLHSG H+AL+ + L FG ++ G F L Y + GI + T L P
Sbjct: 66 WLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMDP 125
Query: 333 -EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
PTVG +G V+ ++ ++ ++ + +D++ + A+ + S ++ V W
Sbjct: 126 LAPTVGASGAVYGLMAIFVSMSYRLR----RDLTAPLILIAV-NVGYSLLMDG---VSLW 177
Query: 392 AHLGAAFTGIIYGFL 406
HLG TG + G +
Sbjct: 178 GHLGGLLTGCVLGIV 192
>gi|322693699|gb|EFY85550.1| Rhomboid family protein [Metarhizium acridum CQMa 102]
Length = 500
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 11/175 (6%)
Query: 239 LFEIASPIRNSEF-------GFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVAL 291
LF + R+ +F GF +P N+ +W+R + P+FLH+GL H+
Sbjct: 233 LFLCPNATRSDQFCPLSEVCGFGGVPNPTFNNANQSPQPNQWFRFIVPIFLHAGLIHIGF 292
Query: 292 SCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT--SFLHTPEPTVGGTGPVFAIIGAW 349
+ +T ++ ++ G FFL+Y GI G + +F + G +G +F +I
Sbjct: 293 NMLLQMTLAKEMEQAIGSVRFFLVYLSAGIFGFVMGGNFAAPGIASTGASGSLFGVIALT 352
Query: 350 LIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYG 404
L+ F + V + MF IL +SF++ +D ++H+G G+ G
Sbjct: 353 LLDLFYSWTERRNPVKDLMF--IILDIVISFVLGLLPGLDNFSHIGGFLMGLALG 405
>gi|331682074|ref|ZP_08382698.1| outer membrane protein [Escherichia coli H299]
gi|450186095|ref|ZP_21889397.1| hypothetical protein A364_03753 [Escherichia coli SEPT362]
gi|331080753|gb|EGI51927.1| outer membrane protein [Escherichia coli H299]
gi|449324675|gb|EMD14600.1| hypothetical protein A364_03753 [Escherichia coli SEPT362]
Length = 625
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA + L L GE WRL++ +FLHS + H+ ++ +ALL G V + G + +I+ G
Sbjct: 49 GANVASLTLSGESWRLLSSVFLHSSVSHLLMNMFALLVVGGAVERILGKWRLLIIWLFSG 108
Query: 321 ISGNLTS---FLHTPEP---TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMF 369
I G L S LH E +VG +G + I GA + Q + R+F
Sbjct: 109 IFGGLISACYALHESEQIVISVGASGAIMGIAGAAIATQLSSGAGTHHKNQRRVF 163
>gi|255539517|ref|XP_002510823.1| KOM, putative [Ricinus communis]
gi|223549938|gb|EEF51425.1| KOM, putative [Ricinus communis]
Length = 325
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 3/148 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRLVT ++LH+G+ H+ + L+ G ++ + +G +IY + G +G+ L+S
Sbjct: 112 WRLVTCIWLHAGIIHLLANMLCLVFIGVRLEQQFGFVRIGIIYLVSGFAGSVLSSLFIRN 171
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L N L + + I+ A++ I VD +A
Sbjct: 172 SISVGASGALFGLLGAMLSELITNWTLYTNKAAALLTLLVII--AINLAIGILPHVDNFA 229
Query: 393 HLGAAFTGIIYGFLTCPLVQLGDASSRN 420
H+G +G + GF+ Q G S+N
Sbjct: 230 HIGGFLSGFLLGFILLARPQFGWLESQN 257
>gi|384563997|ref|ZP_10011101.1| putative membrane protein [Saccharomonospora glauca K62]
gi|384519851|gb|EIE97046.1| putative membrane protein [Saccharomonospora glauca K62]
Length = 330
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 12/148 (8%)
Query: 210 ERDLALQRTEETSNLYLISILVSIDVAVFL---FEIASPIRNSEFGFFSLPLLYGAKINE 266
ER +A R L ++ +L++++V V+ F+ + N F+ +L+ +
Sbjct: 95 ERTVAGARVP--GRLVVVPLLIAVNVVVYALTAFQAGDVMNNYLSPVFADGVLWPEAV-- 150
Query: 267 LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT 326
+L+ EWWRL+T FLH GL H+A++ AL G + G F +Y L +G +
Sbjct: 151 -VLIDEWWRLLTSGFLHYGLLHLAMNMLALWVLGRDLEMLLGRVRFLAVYFLSMFAGAVA 209
Query: 327 SFLHTPEP---TVGGTGPVFAIIGAWLI 351
F+ EP T G +G ++ ++GA L+
Sbjct: 210 VFV-LGEPGTATAGASGAIYGLMGAVLV 236
>gi|357155676|ref|XP_003577199.1| PREDICTED: inactive rhomboid protein 1-like [Brachypodium
distachyon]
Length = 383
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 3/135 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL+T ++LH+G+ H+ ++ LL G ++ + +G L+Y + G G+L S L
Sbjct: 124 WRLITCIWLHAGVVHLLINVLCLLFIGIRLEQEFGFVRIGLVYLISGFGGSLMSALFIRS 183
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F +IG+ L N L A V+ + ++ L+ I VD +A
Sbjct: 184 SISVGASGALFGLIGSMLSELITNWSLYANKVAALLTLVFVIVVNLALGI--LPRVDNFA 241
Query: 393 HLGAAFTGIIYGFLT 407
H+G +G + GF+
Sbjct: 242 HIGGLISGFLLGFVV 256
>gi|406669543|ref|ZP_11076813.1| hypothetical protein HMPREF9707_00716 [Facklamia ignava CCUG 37419]
gi|405583239|gb|EKB57207.1| hypothetical protein HMPREF9707_00716 [Facklamia ignava CCUG 37419]
Length = 228
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Query: 261 GAKINELI-LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA + L+ L EWWR +T F+H G H + L G + G F F IY
Sbjct: 46 GAMYSPLVYLQNEWWRFITASFIHIGFEHFIFNMITLYFLGKDIEALLGHFNFSCIYLFA 105
Query: 320 GISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ GNL S L + G + +F + ++I + N D F ++ L
Sbjct: 106 CVGGNLFSSLANLNVSAGASTGIFGLFACYIILSYLNPDSYTLKSRSITFMTLLI---LQ 162
Query: 380 FIISNFG-PVDTWAHLGAAFTG 400
F+ F +DTW HLG A G
Sbjct: 163 FVTGLFSVGIDTWGHLGGAVYG 184
>gi|294497058|ref|YP_003560758.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium QM
B1551]
gi|294346995|gb|ADE67324.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium QM
B1551]
Length = 200
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 264 INELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISG 323
+N LI G++WRL TP+FLH H+ + ++L GP + + F L Y G+ G
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGLLG 108
Query: 324 NLTSFL--HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKD 363
N+ +FL + VG +G +F ++G +L + K ++++
Sbjct: 109 NIVTFLIQSSFYSHVGASGAIFGLLGFYLYLVIKQKHMLSQS 150
>gi|402594966|gb|EJW88892.1| hypothetical protein WUBG_00197 [Wuchereria bancrofti]
Length = 983
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 12/184 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+W+RL P+FLH+G+ H L+ + + + + K G L+Y + GI G L +
Sbjct: 776 QWYRLFIPLFLHAGIIHCILTVFIQILYMRDLEKLLGWARVALLYMVSGIGGYLAGAIFV 835
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P P VG G + A + + +L+ + + Q ++ + AL F I VD
Sbjct: 836 PYRPEVGPAGSHVGMFAAMYVDVLYSWNLLERPW-HAVVQLSLFTLAL-FAIGTLPWVDN 893
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
WAHL GI+ P +Q + R+++ I ++ + ++FV++L
Sbjct: 894 WAHLFGFIFGILISLAVLPYIQ----TKRHNRTRRIIIVVTSLS-----TALSLFVVLLA 944
Query: 451 SFIF 454
F +
Sbjct: 945 VFYW 948
>gi|295702423|ref|YP_003595498.1| S54 (rhomboid) family peptidase [Bacillus megaterium DSM 319]
gi|294800082|gb|ADF37148.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium DSM
319]
Length = 200
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 264 INELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISG 323
+N LI G++WRL TP+FLH H+ + ++L GP + + F L Y G G
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGFLG 108
Query: 324 NLTSFLHTPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKD 363
N+ +FL VG +G +F ++G +L + K ++++
Sbjct: 109 NIVTFLTQSSFYSHVGASGAIFGLLGFYLYLVIKQKHMLSQS 150
>gi|333025703|ref|ZP_08453767.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
gi|332745555|gb|EGJ75996.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
Length = 341
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 18/182 (9%)
Query: 229 ILVSIDVAVFLFEIASP-----IRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
IL+++++AVFL A P + + E +LP YGA + GEW+RL+T FLH
Sbjct: 130 ILIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPY-YGADHLVGVAEGEWYRLLTAAFLH 188
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGP 341
++H+A++ +L GP + G F +Y + + G++ S+L ++G +G
Sbjct: 189 QEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAASLGASGA 248
Query: 342 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW-AHLGAAFTG 400
+F + GA I + + DV +++ ++F SN W AH+G G
Sbjct: 249 IFGLFGATGILVLR----VRADVRP-FVALLVINLIITFGWSNI----AWQAHIGGLVVG 299
Query: 401 II 402
++
Sbjct: 300 VL 301
>gi|262279911|ref|ZP_06057696.1| rhomboid family protein [Acinetobacter calcoaceticus RUH2202]
gi|262260262|gb|EEY78995.1| rhomboid family protein [Acinetobacter calcoaceticus RUH2202]
Length = 269
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 215 LQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLL-----YGAKINELIL 269
+ R N +L ++L++I+V +F+++I S + S+ P + +GA L
Sbjct: 9 INRKLNVQNWWLTALLIAINVGLFVWQIVSGVDISD------PAMKDAIHWGADFTPLTF 62
Query: 270 VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327
G+ RL T MF H GL H+ L+ WAL FG +G F F +Y L G+ G+L S
Sbjct: 63 SGQPERLFTSMFFHFGLVHLMLNMWALYIFGNVAESLFGRFYFIGMYLLAGLFGSLLS 120
>gi|357390844|ref|YP_004905685.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
gi|311897321|dbj|BAJ29729.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
Length = 307
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 229 ILVSIDVAVFLFE--IASPIRNSEFGFFSLPLL----YGAKINELILVGEWWRLVTPMFL 282
+L+ I++ VFLF + + + G +S +G L EW+RLV+ F+
Sbjct: 96 VLIGINLLVFLFTQYVDQSWQKNPLGMYSWAPAPWERHGVAEGPL----EWYRLVSAQFV 151
Query: 283 HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP--TVGGTG 340
H GL H+A + ++L GPQ+ + G + +Y + GI+GN +L T VG +G
Sbjct: 152 HGGLMHIAANVFSLWVLGPQLERVLGRARYLTLYLVSGIAGNALGYLLTGADMWAVGASG 211
Query: 341 PVFAIIGA 348
+F ++GA
Sbjct: 212 AIFGLLGA 219
>gi|348509157|ref|XP_003442118.1| PREDICTED: inactive rhomboid protein 1-like [Oreochromis niloticus]
Length = 858
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +IY L GI+GNL S +
Sbjct: 655 QFYRLWLSLFLHAGILHCLVSVAFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 714
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F I+ + FQ ++A+ R F K + F +D
Sbjct: 715 PYRAEVGPAGSQFGILACLFVELFQCWQILAQ--PWRAFTKLLCVVLFLFAFGLLPWIDN 772
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
+AH+ +G F P V G + Y C+ +I +FV +
Sbjct: 773 FAHISGFISGFFLSFAFLPYVSFGR-------------MDMYRKRCQIIIFLLVFVGLFS 819
Query: 451 SFIFVF 456
+ +F
Sbjct: 820 GLVVLF 825
>gi|423381726|ref|ZP_17359009.1| hypothetical protein IC9_05078 [Bacillus cereus BAG1O-2]
gi|423444417|ref|ZP_17421322.1| hypothetical protein IEA_04746 [Bacillus cereus BAG4X2-1]
gi|423450246|ref|ZP_17427124.1| hypothetical protein IEC_04853 [Bacillus cereus BAG5O-1]
gi|423467851|ref|ZP_17444619.1| hypothetical protein IEK_05038 [Bacillus cereus BAG6O-1]
gi|423537252|ref|ZP_17513670.1| hypothetical protein IGI_05084 [Bacillus cereus HuB2-9]
gi|423542979|ref|ZP_17519367.1| hypothetical protein IGK_05068 [Bacillus cereus HuB4-10]
gi|423543714|ref|ZP_17520072.1| hypothetical protein IGO_00149 [Bacillus cereus HuB5-5]
gi|423620162|ref|ZP_17595993.1| hypothetical protein IIO_05485 [Bacillus cereus VD115]
gi|423626831|ref|ZP_17602606.1| hypothetical protein IK3_05426 [Bacillus cereus VD148]
gi|401126254|gb|EJQ33998.1| hypothetical protein IEC_04853 [Bacillus cereus BAG5O-1]
gi|401167094|gb|EJQ74388.1| hypothetical protein IGK_05068 [Bacillus cereus HuB4-10]
gi|401186996|gb|EJQ94072.1| hypothetical protein IGO_00149 [Bacillus cereus HuB5-5]
gi|401248887|gb|EJR55206.1| hypothetical protein IIO_05485 [Bacillus cereus VD115]
gi|401250186|gb|EJR56488.1| hypothetical protein IK3_05426 [Bacillus cereus VD148]
gi|401628653|gb|EJS46487.1| hypothetical protein IC9_05078 [Bacillus cereus BAG1O-2]
gi|402411099|gb|EJV43475.1| hypothetical protein IEA_04746 [Bacillus cereus BAG4X2-1]
gi|402412288|gb|EJV44648.1| hypothetical protein IEK_05038 [Bacillus cereus BAG6O-1]
gi|402459704|gb|EJV91440.1| hypothetical protein IGI_05084 [Bacillus cereus HuB2-9]
Length = 190
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
FF P+ A NE I GEWWR++T + +H L H + L G + K G +F
Sbjct: 30 FFLFPM---AANNEYITKGEWWRVITSLLVHVDLQHFLSNSICLFILGSSIEKQLGHISF 86
Query: 313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ 370
+++ L GISGN+ S++ P + G +G +F ++GA L + N+ + +F
Sbjct: 87 IILFFLPGISGNIASYIIMPPEYIHTGASGGIFGLLGAQL-FLLYNRYRPSHSKEIAIFS 145
Query: 371 KAILSTALSFIISNFGP-VDTWAHLGAAFT-GIIYGFLT 407
IL L + F P + +HL T GI+ FLT
Sbjct: 146 IMILILLL---FTFFNPFANPISHLAGLITGGILTPFLT 181
>gi|319957644|ref|YP_004168907.1| rhomboid family protein [Nitratifractor salsuginis DSM 16511]
gi|319420048|gb|ADV47158.1| Rhomboid family protein [Nitratifractor salsuginis DSM 16511]
Length = 230
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 9/142 (6%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLI-YTLGGISGNLTSF- 328
GEWWRL++ +FLH G H+AL+ +L G ++ + Y P +LI Y L GI G L S
Sbjct: 54 GEWWRLLSGLFLHGGPEHLALNMISLYIVG-RIVELYFPLLDYLILYFLSGIGGFLVSMT 112
Query: 329 LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQK---AILSTALSFIISNF 385
LH +G +G +F + GA + F +++ S R F + AIL+ L F +
Sbjct: 113 LHPETVIIGASGAIFGLFGALGGFMFFHRERFGA--SYRAFVREFGAILAINLIFDLLVP 170
Query: 386 GPVDTWAHLGAAFTGIIYGFLT 407
G +D AH+ GII G+L
Sbjct: 171 G-IDLSAHITGLILGIIGGYLA 191
>gi|299755411|ref|XP_001828645.2| hypothetical protein CC1G_10517 [Coprinopsis cinerea okayama7#130]
gi|298411214|gb|EAU93149.2| hypothetical protein CC1G_10517 [Coprinopsis cinerea okayama7#130]
Length = 502
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 5/151 (3%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL--TSFL 329
+W+R +T +FLH+G+ H+ L+ A T Q+ + G F ++Y GI GN+ +F
Sbjct: 282 QWFRFITAIFLHAGIIHLLLNMLAQFTLSAQIERDMGSTGFLIVYFAAGIFGNVLGGNFS 341
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
P+VG +G +F + + + + V + + A+ I VD
Sbjct: 342 LVGIPSVGASGAIFGTLAVTWVDLLAHWKYQYRPVRKVGLVFMTIELAIGVAIGFIPYVD 401
Query: 390 TWAHLGAAFTGIIYGFLTCPLVQLGDASSRN 420
+AHLG G++ G + P++ AS R+
Sbjct: 402 NFAHLGGFLMGLLVGTIFYPVIS---ASKRH 429
>gi|225386984|ref|ZP_03756748.1| hypothetical protein CLOSTASPAR_00734 [Clostridium asparagiforme
DSM 15981]
gi|225046996|gb|EEG57242.1| hypothetical protein CLOSTASPAR_00734 [Clostridium asparagiforme
DSM 15981]
Length = 193
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 15/184 (8%)
Query: 230 LVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELIL-VGEWWRLVTPMFLHSGLF 287
++ I+V FL+ E+ N+ F L +GA L++ G+++RLVT +F+H G+
Sbjct: 5 IIIINVLCFLYLELQGSTENAGF-----MLAHGAMFAPLVVDHGQYYRLVTSVFMHFGVS 59
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF---LHTPEPTV--GGTGPV 342
H+ + L G + ++ G + + Y L G+ NL S L T +V G +G +
Sbjct: 60 HLLNNMLVLFVLGDNLERALGHVKYLIFYLLCGVGANLVSMTVNLMTGSLSVGAGASGAI 119
Query: 343 FAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
F ++G L+Y +D++ R IL T S +D AH+G GI+
Sbjct: 120 FGVVGG-LVYAVGVNRGRLEDLTSRQLGVMILLTLYHGFTSM--NIDNAAHIGGLAAGIL 176
Query: 403 YGFL 406
G L
Sbjct: 177 LGIL 180
>gi|347533424|ref|YP_004840187.1| Rhomboid family protein [Roseburia hominis A2-183]
gi|345503572|gb|AEN98255.1| Rhomboid family protein [Roseburia hominis A2-183]
Length = 394
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 13/182 (7%)
Query: 225 YLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVG-EWWRLVTPMFLH 283
Y+ LV+++V +L + + ++ GFF +GA + I + EWWR+++ FLH
Sbjct: 205 YVTIALVTVNVITYL--VLEWLGDTTNGFFMAE--HGAMYPDFIRINHEWWRIISAGFLH 260
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF---LHTPEPTV--GG 338
G H+ + L G ++ + G +FLIY + I L S+ L T + V G
Sbjct: 261 FGAVHLVNNMVILYCMGSRLERVTGHLKYFLIYLVSLIGAGLLSYGMMLRTGDYAVSAGA 320
Query: 339 TGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAF 398
+G +F +IG +L ++ + + + +L+ F S+ G +D W H+G
Sbjct: 321 SGAIFGVIGGFLWIVILHRGRFEQITTRGIMMMIVLTIYYGF--SSAG-IDNWGHIGGLL 377
Query: 399 TG 400
G
Sbjct: 378 AG 379
>gi|432601198|ref|ZP_19837451.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE66]
gi|431143593|gb|ELE45316.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE66]
Length = 625
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA + L L GE WRL++ +FLHS H+ ++ +ALL G + G + +I+ G
Sbjct: 49 GANVTSLTLSGESWRLLSSVFLHSSFPHLLMNMFALLVVGAVAERILGKWRLLIIWLFSG 108
Query: 321 ISGNLTSFLHTPEP------TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ-KAI 373
+ G LTS + +VG +G + I GA + Q + R+F +
Sbjct: 109 VFGGLTSACYALRESEQIVISVGASGAIMGIAGAAIATQLASGAGTYHKNQRRVFSLLGM 168
Query: 374 LSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPL 410
++ L + G +D H+G G G L+ L
Sbjct: 169 VALTLLYGARQTG-IDNACHIGGLIAGGAMGGLSARL 204
>gi|318057482|ref|ZP_07976205.1| hypothetical protein SSA3_06048 [Streptomyces sp. SA3_actG]
Length = 341
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 18/182 (9%)
Query: 229 ILVSIDVAVFLFEIASP-----IRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
IL+++++AVFL A P + + E +LP YGA + GEW+RL+T FLH
Sbjct: 130 ILIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPY-YGADHLVGVAEGEWYRLLTAAFLH 188
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGP 341
++H+A++ +L GP + G F +Y + + G++ S+L ++G +G
Sbjct: 189 QEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAASLGASGA 248
Query: 342 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW-AHLGAAFTG 400
+F + GA I + + DV +++ ++F SN W AH+G G
Sbjct: 249 IFGLFGATGILVLR----VRADVRP-FVALLVINLIITFGWSNI----AWQAHIGGLVVG 299
Query: 401 II 402
++
Sbjct: 300 VL 301
>gi|3461845|gb|AAC33231.1| hypothetical protein [Arabidopsis thaliana]
Length = 372
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 34/191 (17%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLH 330
E WRL T ++LH+G+FHV + +L+ G ++ + +G L+Y + G G+ L+S +
Sbjct: 154 EVWRLFTCIWLHAGVFHVLANMLSLIFIGIRLEQEFGFVRIGLLYMISGFGGSLLSSLFN 213
Query: 331 TPEPTVGGTGPVFAIIGA--------WLIYQFQ-NKDLIAKDVSERMFQKAILS------ 375
+VG +G +F ++GA W IY + K + K + M +I+S
Sbjct: 214 RAGISVGASGALFGLLGAMLSELLTNWTIYANKVAKSSLVKQAALSMNDVSIMSLVFLHL 273
Query: 376 -----------TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEE 424
A++ + VD +AHLG +G + GF+ Q G + RN+
Sbjct: 274 QFAALLTLIFIIAINLAVGILPHVDNFAHLGGFTSGFLLGFVFLIRPQYGYFNQRNNP-- 331
Query: 425 GITLIRQYANP 435
R YA P
Sbjct: 332 -----RGYAAP 337
>gi|356504274|ref|XP_003520922.1| PREDICTED: inactive rhomboid protein 1-like [Glycine max]
Length = 385
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL+T M+LH+G+FH+ + +L G ++ + +G L++ + G G+L S L
Sbjct: 126 WRLITCMWLHAGVFHLLANMLGILVIGIRLEQEFGFVLIGLLFVISGFGGSLLSALFIQS 185
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++G L N + ++ + ++ ++ + VD +A
Sbjct: 186 NISVGASGALFGLLGGMLSELITNWSIYDNKLTALL--TLVIIIVINLAVGILPHVDNFA 243
Query: 393 HLGAAFTGIIYGFLTCPLVQLGDASSR 419
H+G TG + GF+ Q G + R
Sbjct: 244 HIGGFLTGFLLGFVFLIRPQFGWVNQR 270
>gi|269124334|ref|YP_003297704.1| Rhomboid family protein [Thermomonospora curvata DSM 43183]
gi|268309292|gb|ACY95666.1| Rhomboid family protein [Thermomonospora curvata DSM 43183]
Length = 302
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 80/157 (50%), Gaps = 9/157 (5%)
Query: 203 KDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGA 262
++G R++ R + + + + L++++V V+L +++S +F +
Sbjct: 53 QEGSRTVRRPRTVFGGQIPATPVVTYTLIALNVLVYLAQLSSSRIVYDFAMVGVRFDPYG 112
Query: 263 KINELILVGEWWRLVTPMFLHS-------GLFHVALSCWALLTFGPQVCKSYGPFTFFLI 315
+++ + GEW+RL+T FLHS G+ H+ + WAL GPQ+ + G + F +
Sbjct: 113 EMHG-VADGEWYRLITAAFLHSQPGGGSFGVTHILFNMWALWVIGPQLEQVLGRWRFTSL 171
Query: 316 YTLGGISGNLTSFLHTPE-PTVGGTGPVFAIIGAWLI 351
Y L + G++ +L P VG +G +F + GA+ +
Sbjct: 172 YLLSALGGSVLLYLVDPTGAAVGASGAIFGLFGAFFV 208
>gi|291278649|ref|YP_003495484.1| rhomboid family protein [Deferribacter desulfuricans SSM1]
gi|290753351|dbj|BAI79728.1| rhomboid family protein [Deferribacter desulfuricans SSM1]
Length = 241
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 230 LVSIDVAVFLFEIASP--IRNSEFGFFSL--------PLLYGAKINELILVGEWWRLVTP 279
L+ I+V VFL+E++ P + N F F L Y A ++ V +W T
Sbjct: 20 LIFINVIVFLYEVSLPPDLLNRFFYLFGLVPARYTHPEWAYFAGLH----VDNYWPFFTN 75
Query: 280 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE---PTV 336
MFLH FH+ + W L FG V G F + + Y L GI+ ++T F+ + P V
Sbjct: 76 MFLHGSWFHLISNMWTLYIFGDNVEDRLGHFRYLIFYLLSGIAASITHFVFNADSVVPAV 135
Query: 337 GGTGPVFAIIGAWLI 351
G +G + ++GA+ +
Sbjct: 136 GASGAIAGVMGAYFV 150
>gi|115459992|ref|NP_001053596.1| Os04g0569300 [Oryza sativa Japonica Group]
gi|38344377|emb|CAE02252.2| OSJNBb0032E06.11 [Oryza sativa Japonica Group]
gi|113565167|dbj|BAF15510.1| Os04g0569300 [Oryza sativa Japonica Group]
gi|215704480|dbj|BAG93914.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 342
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLHT 331
WRL T +LH+GL H+A + +LL G ++ + +G + L+Y + G G++ S F+
Sbjct: 136 WRLETSTWLHAGLIHLAANMISLLIIGIRLEQQFGFWKVGLVYLVSGFGGSVLSVLFISR 195
Query: 332 PEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
TVG +G +F ++GA L N + + + + I+ A++ + VD +
Sbjct: 196 NGITVGASGALFGLLGAMLSELITNWTIYSNRCAAMV--NLIIIAAINLALGILPRVDNF 253
Query: 392 AHLGAAFTGIIYGFLTCPLVQLG---DASSRNSQEEGITLI 429
AH+G TG + GF+ Q G SS S+ +I
Sbjct: 254 AHIGGFATGFLLGFVLLIQPQFGWSEQVSSAKSKYNAFQII 294
>gi|315042361|ref|XP_003170557.1| rhomboid family membrane protein [Arthroderma gypseum CBS 118893]
gi|311345591|gb|EFR04794.1| rhomboid family membrane protein [Arthroderma gypseum CBS 118893]
Length = 498
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 75/146 (51%), Gaps = 4/146 (2%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G +++ +W+R + PMFLH+GL H+ + +A L+ G + ++ G + + ++Y G
Sbjct: 238 GGSLDDKPEPNQWFRFIVPMFLHAGLVHIGFNLFAQLSIGADMERAIGWWRYAIVYFSSG 297
Query: 321 ISGNL--TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
I G + +F + G +G +F I ++ F + + MF +++ A+
Sbjct: 298 IFGFVLGGNFAAPAIASTGASGCLFGIFALCVLDLFYTWGKKQRPWVDLMFM--LITVAI 355
Query: 379 SFIISNFGPVDTWAHLGAAFTGIIYG 404
SF++ +D ++H+G TG++ G
Sbjct: 356 SFVLGLLPGLDNFSHIGGFLTGLVLG 381
>gi|225874838|ref|YP_002756297.1| S54 (rhomboid) family peptidase [Acidobacterium capsulatum ATCC
51196]
gi|225792351|gb|ACO32441.1| peptidase, S54 (rhomboid) family [Acidobacterium capsulatum ATCC
51196]
Length = 299
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 21/200 (10%)
Query: 230 LVSIDVAVFLFEIASPIRN-SEFGFFSLPLLY-GAKINELILVG-EWWRLVTPMFLHSGL 286
LV I+ V+L+ +R S + +L L Y GA I L+L +WWRL+T MF+H G+
Sbjct: 60 LVGINCLVYLWMC---LRGFSPWAPTTLQLYYSGANIGPLVLAHHQWWRLITAMFVHGGI 116
Query: 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--------EPTVGG 338
H+ ++ W L G GP F Y L G +G++ S P +VG
Sbjct: 117 IHLGVNMWCLWNLGLLAEPLMGPVGVFAAYLLTGYAGDILSVARHPGVGGGPQGVVSVGA 176
Query: 339 TGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN-------FGPVDTW 391
+G +F + G +I I K ++ + I L+ ++ F VD
Sbjct: 177 SGAIFGLAGVLIILLKSPLLPIPKADLNKLRRSVIWFAVLNLVLDAGIDFSHFFIQVDNM 236
Query: 392 AHLGAAFTGIIYGFLTCPLV 411
AH+G +G+ G P +
Sbjct: 237 AHIGGFLSGMALGLPMVPRI 256
>gi|184155757|ref|YP_001844097.1| hypothetical protein LAF_1281 [Lactobacillus fermentum IFO 3956]
gi|260663527|ref|ZP_05864417.1| rhomboid family protein [Lactobacillus fermentum 28-3-CHN]
gi|183227101|dbj|BAG27617.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|260552068|gb|EEX25121.1| rhomboid family protein [Lactobacillus fermentum 28-3-CHN]
Length = 221
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 18/210 (8%)
Query: 230 LVSIDVAVFLFE-IASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
LV + V V+L E +A NS + L GA + G+WWR+ T FLH GL H
Sbjct: 14 LVGVCVLVYLLEELAGGATNS-----ATLLNLGANYGPFVRAGQWWRVFTAAFLHIGLTH 68
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAIIG 347
+ L+ L G + + G +IY + + GNL S P + G + +F + G
Sbjct: 69 LFLNMMVLYYLGRTIEELTGHLRMAVIYLVSILMGNLVSVAVQPVTISAGASTGIFGLFG 128
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFL 406
A+L F + + ++ ++ ++ + P +D + HLG G++ GFL
Sbjct: 129 AFL---FMGSEFRQYPALRGLARQYLILVIINLVYDLIAPGIDIFGHLG----GLVGGFL 181
Query: 407 TCPLV---QLGDASSRNSQEEGITLIRQYA 433
C LV LG+ R G L+ +
Sbjct: 182 ACALVGVPTLGEIHLRKRFLGGTILVLGFV 211
>gi|119175195|ref|XP_001239866.1| hypothetical protein CIMG_09487 [Coccidioides immitis RS]
gi|392870060|gb|EAS28616.2| DHHC zinc finger membrane protein [Coccidioides immitis RS]
Length = 485
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G IN+ +W+R + P+FLH+GL H+ ++ A L G + +S G + F +IY G
Sbjct: 224 GGSINDKDEPNQWFRFIIPIFLHAGLIHIGVNLLAQLVIGADMERSIGWWRFAIIYYASG 283
Query: 321 ISGNL--TSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
I G + +F + G +G +F I+ ++ + I + ++ + IL+ A+
Sbjct: 284 IFGFVFGGNFAAPGIASTGASGSLFGILALCVLDLLYKWNSIRRPMTYLLMM--ILAVAI 341
Query: 379 SFIISNFGPVDTWAHLGAAFTGIIYG 404
SF++ +D ++H+G G+ G
Sbjct: 342 SFVLGLLPGLDNFSHIGGFLMGLALG 367
>gi|6573780|gb|AAF17700.1|AC009243_27 F28K19.7 [Arabidopsis thaliana]
Length = 735
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 27/206 (13%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
E WR++T +LHSGLFH+ ++ +L+ G + + +GP +IY L GI G+L + L
Sbjct: 114 EIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYFLSGIMGSLFAVLFV 173
Query: 332 PE-PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMF-----------------QKAI 373
P++ F +IGA L +N +L V + ++ AI
Sbjct: 174 RNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKVKDFLWFCFVSCYLLLIAFLIISALAI 233
Query: 374 LST--ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASS-------RNSQEE 424
+ T ++F+I +D +A++G +G + GF+ QL +
Sbjct: 234 IFTIFTVNFLIGFLPFIDNFANIGGFISGFLLGFVLLFKPQLRQMPPSHKGKLFEDDMNR 293
Query: 425 GITLIRQYANPCKSLIVFTIFVIILG 450
L Q+ P +I +F IL
Sbjct: 294 STRLKEQFDRPVLRIICLLVFCGILA 319
>gi|145329975|ref|NP_001077973.1| protein RHOMBOID-like 1 [Arabidopsis thaliana]
gi|77999982|dbj|BAE46872.1| Rhomboid family protein AtRBL1 [Arabidopsis thaliana]
gi|330253109|gb|AEC08203.1| protein RHOMBOID-like 1 [Arabidopsis thaliana]
Length = 346
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 34/191 (17%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLH 330
E WRL T ++LH+G+FHV + +L+ G ++ + +G L+Y + G G+ L+S +
Sbjct: 128 EVWRLFTCIWLHAGVFHVLANMLSLIFIGIRLEQEFGFVRIGLLYMISGFGGSLLSSLFN 187
Query: 331 TPEPTVGGTGPVFAIIGA--------WLIYQFQ-NKDLIAKDVSERMFQKAILS------ 375
+VG +G +F ++GA W IY + K + K + M +I+S
Sbjct: 188 RAGISVGASGALFGLLGAMLSELLTNWTIYANKVAKSSLVKQAALSMNDVSIMSLVFLHL 247
Query: 376 -----------TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEE 424
A++ + VD +AHLG +G + GF+ Q G + RN+
Sbjct: 248 QFAALLTLIFIIAINLAVGILPHVDNFAHLGGFTSGFLLGFVFLIRPQYGYFNQRNNP-- 305
Query: 425 GITLIRQYANP 435
R YA P
Sbjct: 306 -----RGYAAP 311
>gi|225434919|ref|XP_002283488.1| PREDICTED: inactive rhomboid protein 1 [Vitis vinifera]
Length = 391
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 263 KINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGIS 322
++++++ + WRL++ ++LH+G+FHV + +L+ G ++ + +G L+Y + G
Sbjct: 121 EVSKVVHRHQVWRLISCIWLHAGVFHVLANMLSLVFIGIRLEQEFGFVRIGLLYVVSGFG 180
Query: 323 GN-LTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 381
G+ L+S +VG +G +F ++G L N + A + + I+ L+
Sbjct: 181 GSMLSSLFIQSSISVGASGALFGLLGGMLSELITNWTIYANKFAALLTLILIIIVNLAVG 240
Query: 382 ISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITL-------IRQYAN 434
I VD +AH+G +G + GF+ Q G S RN+ I + QY
Sbjct: 241 I--LPHVDNFAHIGGFVSGFLLGFVFLIRPQFGWVSQRNASPGHIAPSVKPKHKMYQYVL 298
Query: 435 PCKSLIVFTI 444
SLI+ T+
Sbjct: 299 WVMSLILLTV 308
>gi|116310009|emb|CAH67035.1| OSIGBa0139P06.8 [Oryza sativa Indica Group]
gi|218195395|gb|EEC77822.1| hypothetical protein OsI_17028 [Oryza sativa Indica Group]
Length = 342
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLHT 331
WRL T +LH+GL H+A + +LL G ++ + +G + L+Y + G G++ S F+
Sbjct: 136 WRLETSTWLHAGLIHLAANMISLLLIGIRLEQQFGFWKVGLVYLVSGFGGSVLSVLFISR 195
Query: 332 PEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW 391
TVG +G +F ++GA L N + + + + I+ A++ + VD +
Sbjct: 196 NGITVGASGALFGLLGAMLSELITNWTIYSNRCAAMV--NLIIIAAINLALGILPRVDNF 253
Query: 392 AHLGAAFTGIIYGFLTCPLVQLG---DASSRNSQEEGITLI 429
AH+G TG + GF+ Q G SS S+ +I
Sbjct: 254 AHIGGFATGFLLGFVLLIQPQFGWSEQVSSAKSKYNAFQII 294
>gi|229101043|ref|ZP_04231824.1| Rhomboid [Bacillus cereus Rock3-28]
gi|228682375|gb|EEL36471.1| Rhomboid [Bacillus cereus Rock3-28]
Length = 187
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 9/158 (5%)
Query: 253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
FF P+ A NE I GEWWR++T + +H L H + L G + K G +F
Sbjct: 30 FFLFPM---AANNEYITKGEWWRVITSLLVHVDLQHFLSNSICLFILGSSIEKQLGHISF 86
Query: 313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ 370
+++ L GISGN+ S++ P + G +G +F ++GA L + N+ + +F
Sbjct: 87 IILFFLPGISGNIASYIIMPPEYIHTGASGGIFGLLGAQL-FLLYNRYRPSHSKEIAIFS 145
Query: 371 KAILSTALSFIISNFGPVDTWAHLGAAFT-GIIYGFLT 407
IL L + F + +HL T GI+ FLT
Sbjct: 146 IMILILLLFTFFNPFA--NPISHLAGLITGGILTPFLT 181
>gi|170593681|ref|XP_001901592.1| Rhomboid family protein [Brugia malayi]
gi|158590536|gb|EDP29151.1| Rhomboid family protein [Brugia malayi]
Length = 1013
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+W+RL P+FLH+G+ H L+ + + + + K G L+Y + G+ G L +
Sbjct: 806 QWYRLFIPLFLHAGIIHCILTIFIQILYMRDLEKLLGWARIALLYMVSGVGGYLAGAIFV 865
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P P VG G + A + + +L+ + + Q ++ + AL F I VD
Sbjct: 866 PYRPEVGPAGSHVGMFAAMYVDVLYSWNLLERPW-HAVVQLSLFTLAL-FTIGTLPWVDN 923
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIV-FTIFVIIL 449
WAHL GI+ P +Q + R+++ I ++ SL ++F+++L
Sbjct: 924 WAHLFGFIFGILISLAVLPYIQ----TKRHNRTRRIIIV------VTSLTTALSLFIVLL 973
Query: 450 GSF 452
F
Sbjct: 974 AVF 976
>gi|15240744|ref|NP_196342.1| RHOMBOID-like protein 3 [Arabidopsis thaliana]
gi|7546703|emb|CAB87281.1| membrane protein [Arabidopsis thaliana]
gi|16648762|gb|AAL25572.1| AT5g07250/T28J14_190 [Arabidopsis thaliana]
gi|20466143|gb|AAM19993.1| AT5g07250/T28J14_190 [Arabidopsis thaliana]
gi|332003744|gb|AED91127.1| RHOMBOID-like protein 3 [Arabidopsis thaliana]
Length = 346
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLH 330
E WRL+T ++LH+G+ H+ + +L+ G ++ + +G +IY L GI G+ L+S
Sbjct: 133 EGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGFVRIGVIYLLSGIGGSVLSSLFI 192
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
+VG +G +F ++G+ L F N + + ++ + + ++ I VD
Sbjct: 193 RNSISVGASGALFGLLGSMLSELFTNWTIYSNKIAALL--TLLFVILINLAIGILPHVDN 250
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQY 432
+AH+G TG + GF+ Q +R +G L +Y
Sbjct: 251 FAHVGGFVTGFLLGFILLARPQF-KWLAREHMPQGTPLRYKY 291
>gi|395334565|gb|EJF66941.1| rhomboid-domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 360
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT--SFL 329
+W+R +TP+FLH+GL H L+ A +T QV + G F ++Y GI GN+ +F
Sbjct: 153 QWFRFITPIFLHAGLIHFLLNMLAQMTVSAQVEREMGTIAFLILYLAAGIFGNVLGGNFS 212
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ--KAILSTALSFIISNFGP 387
P+VG +G +F + + F + + + +F + ++ A+ FI
Sbjct: 213 LVGSPSVGASGAIFGTVAVAWVDLFAHWRYTYQPGKKLVFMIIELVIGVAIGFIPY---- 268
Query: 388 VDTWAH 393
VD +AH
Sbjct: 269 VDNFAH 274
>gi|297810841|ref|XP_002873304.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297319141|gb|EFH49563.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 346
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLH 330
E WRL+T ++LH+G+ H+ + +L+ G ++ + +G +IY L GI G+ L+S
Sbjct: 133 EGWRLLTCIWLHAGVIHLGANMLSLIFIGIRLEQQFGFVRIGVIYLLSGIGGSVLSSLFI 192
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
+VG +G +F ++G+ L F N + + ++ + + ++ I VD
Sbjct: 193 RNSISVGASGALFGLLGSMLSELFTNWTIYSNKIAALL--TLLFVILINLAIGILPHVDN 250
Query: 391 WAHLGAAFTGIIYGFL 406
+AH+G TG + GF+
Sbjct: 251 FAHVGGFVTGFLLGFI 266
>gi|414867424|tpg|DAA45981.1| TPA: hypothetical protein ZEAMMB73_979905 [Zea mays]
Length = 254
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRLVT ++LH+G+ H+ + +L+ G ++ + +G +IY + G+ G+ L+S
Sbjct: 37 WRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGYVRVGIIYLVSGVGGSVLSSLFIRN 96
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L F N + A + + ++ A++ I VD +A
Sbjct: 97 NISVGASGALFGLLGAMLSELFTNWTIYANKAAALV--TLLVVIAINLAIGILPHVDNFA 154
Query: 393 HLGAAFTGIIYGFL 406
H+G TG + GF+
Sbjct: 155 HIGGFLTGFLLGFV 168
>gi|169615256|ref|XP_001801044.1| hypothetical protein SNOG_10784 [Phaeosphaeria nodorum SN15]
gi|111061058|gb|EAT82178.1| hypothetical protein SNOG_10784 [Phaeosphaeria nodorum SN15]
Length = 521
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+WWR + P+FLH+G+ H+ + LT G + K GP F L+Y GI G + +
Sbjct: 241 QWWRFIVPIFLHAGIIHIGFNMLLQLTLGRDMEKEIGPLRFALVYFSAGIFGFVLGGNYA 300
Query: 332 PE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
+ +VG +G +F I+ L+ V + +F +L A++F++ +D
Sbjct: 301 ADGLSSVGASGSLFGILALTLLDLLYTWSTRRSPVKDLLF--LLLDIAIAFVLGLLPGLD 358
Query: 390 TWAHLGAAFTGIIYG 404
++H+G G++ G
Sbjct: 359 NFSHIGGFLMGLVLG 373
>gi|145221663|ref|YP_001132341.1| rhomboid family protein [Mycobacterium gilvum PYR-GCK]
gi|145214149|gb|ABP43553.1| Rhomboid family protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 25/200 (12%)
Query: 204 DGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAK 263
+G+RS+ R +T + L+ I++ F ++ASP FG +S
Sbjct: 54 EGMRSV-------RPVKTLTPVVTYALIGINLLAFALQMASPGLQRAFGLWS-------- 98
Query: 264 INELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISG 323
+ GE +RL+T FLH GL H+A + AL GP + + G F +Y + + G
Sbjct: 99 --PAVADGEMYRLLTSAFLHFGLTHLAFNMLALYFVGPPLEAALGRARFITLYLVSALGG 156
Query: 324 NLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 382
++ +L T T G +G VF + GA F + DV M +L+ A +F+I
Sbjct: 157 SVLVYLLTLNALTAGASGAVFGLFGA----TFVVGRKLNMDVRSVM-AIIVLNLAFTFLI 211
Query: 383 SNFGPVD-TW-AHLGAAFTG 400
F + +W H+G TG
Sbjct: 212 PLFTSQNISWQGHIGGLVTG 231
>gi|398784354|ref|ZP_10547618.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
gi|396995277|gb|EJJ06295.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
Length = 303
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 28/195 (14%)
Query: 229 ILVSIDVAVFLFEIA-----SPIRN--SEFGFFSLPLLYGAKINELILV--GEWWRLVTP 279
IL+ ++VAVF+ +A SP+ N G + P Y L+ V GEW+RL+T
Sbjct: 91 ILLGLNVAVFVAVMATGGALSPLVNRLDLVGLAAEPGGY-----HLVGVAEGEWYRLLTA 145
Query: 280 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVG 337
MFLH + H+A + +L GP + + G F +Y L G+ G+ S+ +P++G
Sbjct: 146 MFLHQQVAHIAFNMLSLWWLGPPLEAALGRARFIALYLLAGLGGSALSYFLAAQNQPSLG 205
Query: 338 GTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW-AHLGA 396
+G +F ++GA ++ + + M + ++ L+ + + P W AH+G
Sbjct: 206 ASGAIFGLLGA--------TAVLLRRLRYDM-KPVLILLGLNLVFTFLWPNIAWQAHVGG 256
Query: 397 AFTG--IIYGFLTCP 409
G + +G + P
Sbjct: 257 LVVGAAVAFGMVHAP 271
>gi|419012186|ref|ZP_13559551.1| rhomboid family protein [Escherichia coli DEC1D]
gi|377862951|gb|EHU27758.1| rhomboid family protein [Escherichia coli DEC1D]
Length = 625
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA + L L GE WRL++ +FLHS H+ ++ +ALL G + G + +I+ G
Sbjct: 49 GANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMFALLAVGTVAERILGKWRLLIIWLFSG 108
Query: 321 ISGNLTSFLHTPEP------TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ-KAI 373
I G L S + +VG +G + I GA + Q + R+F +
Sbjct: 109 IFGGLISACYALRESEQIVISVGASGAIMGIAGAAIATQLASGAGTHHKNQRRVFPLLGM 168
Query: 374 LSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
++ L + G +D H+G G G+L+ LV
Sbjct: 169 VALTLLYGTRQTG-IDNACHIGDLIAGGALGWLSARLV 205
>gi|386360019|ref|YP_006058264.1| hypothetical protein TtJL18_0572 [Thermus thermophilus JL-18]
gi|383509046|gb|AFH38478.1| putative membrane protein [Thermus thermophilus JL-18]
Length = 210
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 12/127 (9%)
Query: 230 LVSIDVAVFLFEIA-SPIRN-SEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
LV+++VA FL E+ P + ++ GF +P L+ +GE +R++T MFLH GLF
Sbjct: 20 LVALNVAAFLLELLLGPSQVVAKMGF--VPALFFQDP-----LGEGYRILTSMFLHGGLF 72
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE---PTVGGTGPVFA 344
H+ + W L FG V G F L Y LGG++ L L P P +G +G V A
Sbjct: 73 HLLSNMWFLWVFGDNVEDRMGGERFLLFYLLGGVAAALAQALFMPASTVPMIGASGAVSA 132
Query: 345 IIGAWLI 351
++GA+ +
Sbjct: 133 VLGAYYV 139
>gi|383764016|ref|YP_005442998.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381384284|dbj|BAM01101.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 228
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 29/210 (13%)
Query: 215 LQRTEETSNLYLIS-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEW 273
L+ T + +L L++ L++++V VF ++ P ++EF L+ + L W
Sbjct: 4 LRDTVQARSLPLMNWTLIALNVFVFFALLSGP--HAEFWIERYALI---PAHLLTTPAAW 58
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
L T MFLH GLFH+ + WAL FG V G F + Y L G++ + L P
Sbjct: 59 LTLFTSMFLHGGLFHLLSNMWALYIFGDNVEDRMGSGRFLIFYLLCGVAAAIVHVLMNPS 118
Query: 334 ---PTVGGTGPVFAIIGAWLI-----------------YQFQNKDLIAKDVS-ERMFQKA 372
PTVG +G + ++GA+L+ Y F+ L V A
Sbjct: 119 STIPTVGASGAISGVMGAYLVLFPFARVITLVPFFFIPYFFEIPALFFIGVWFAGQLVNA 178
Query: 373 ILSTALSFIISNFGPVDTWAHLGAAFTGII 402
++++AL+ + G V WAH+G G++
Sbjct: 179 LITSALA--TPDIGGVAWWAHVGGFVAGMV 206
>gi|90021380|ref|YP_527207.1| GntR family transcriptional regulator [Saccharophagus degradans
2-40]
gi|89950980|gb|ABD80995.1| transcriptional regulator, GntR family [Saccharophagus degradans
2-40]
Length = 340
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 110/257 (42%), Gaps = 19/257 (7%)
Query: 171 TERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRT-----EETSNLY 225
R ++ ++++KS+ G+++ E D + +RD A + + L+
Sbjct: 93 ARRETISIDMALAKSNAEKQAGQVE-ETEFAQLD---THQRDAAFSAVNMLLIKAPARLW 148
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 285
L + +++ VA F + N+ F SL L + + + G+ WR++TP FLH G
Sbjct: 149 LSILFIALGVAGFY--VQELFLNTSL-FHSLTFL---PLEKAVASGQPWRILTPAFLHFG 202
Query: 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGG-TGPVFA 344
L H+ + L G ++ G + ++ + N T F P GG +G V+
Sbjct: 203 LLHIVFNALWLWILGGRLELFLGRGLYLGLFVFTALVSNYTQFFMEPRGIFGGLSGVVYG 262
Query: 345 IIGAWLIYQFQNKD-LIAKDVSERMFQKAILSTALSFIISNF--GPVDTWAHLGAAFTGI 401
+GA L+ K LI S L + II NF G V AH+G G+
Sbjct: 263 YLGALLVLNRTYKSPLIYIMPSLAGMMLLFLGLGVLGIIDNFMEGKVANGAHIGGLVAGV 322
Query: 402 IYGFLTCPLVQLGDASS 418
I+G + L + G SS
Sbjct: 323 IFGLVLTQLRKTGVKSS 339
>gi|433601853|ref|YP_007034222.1| membrane protein [Saccharothrix espanaensis DSM 44229]
gi|407879706|emb|CCH27349.1| membrane protein [Saccharothrix espanaensis DSM 44229]
Length = 286
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 268 ILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327
I GEWWRL+T FLH G H+ L+ AL G ++ ++G F +Y + + G +
Sbjct: 118 IFYGEWWRLLTSGFLHYGPAHLGLNMIALYVLGRELEPTFGKIRFLALYLVSLLGGGVAV 177
Query: 328 FL--HTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
+L H P G +G V+ ++GA L+ + K
Sbjct: 178 YLFGHVNTPVAGASGAVYGLMGAMLVAVLKLK 209
>gi|226504776|ref|NP_001142335.1| membrane protein [Zea mays]
gi|194708266|gb|ACF88217.1| unknown [Zea mays]
gi|224034285|gb|ACN36218.1| unknown [Zea mays]
gi|414886370|tpg|DAA62384.1| TPA: membrane protein [Zea mays]
Length = 324
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Query: 265 NELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN 324
N+++ + WRL++ ++LH+GL H+ ++ +LL G ++ + +G IY L G G+
Sbjct: 105 NKIVHQNQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 164
Query: 325 LTS--FLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 382
+ S FL +VG +G +F ++G+ L N + + + + + AL+ I
Sbjct: 165 VLSALFLRNSYISVGASGALFGLLGSMLSELLMNWTIYSNKAAAII--TLLFIIALNLAI 222
Query: 383 SNFGPVDTWAHLGAAFTGIIYGFL 406
VD +AH+G TG + GF+
Sbjct: 223 GILPHVDNFAHIGGFATGFLLGFV 246
>gi|340522831|gb|EGR53064.1| predicted protein [Trichoderma reesei QM6a]
Length = 515
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 10/145 (6%)
Query: 265 NELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN 324
N+ + +W+R + P+F+H+GL H+ + LT G ++ + G FFL+Y GI G
Sbjct: 272 NQTPIPNQWFRFIIPIFMHAGLIHIGFNLLMQLTIGKEMEIAIGSIRFFLVYMSAGIFGF 331
Query: 325 LT--SFLHTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVSERMFQKAILSTALS 379
+ ++ + G +G +F II L+Y ++++ KD+ +F I+ +S
Sbjct: 332 VMGGNYAAPGIASTGASGSLFGIIALTLLDLLYSWKDRRSPVKDL---LF--IIIDMVIS 386
Query: 380 FIISNFGPVDTWAHLGAAFTGIIYG 404
F++ +D ++H+G G++ G
Sbjct: 387 FVLGLLPGLDNFSHIGGFLMGLVLG 411
>gi|318080696|ref|ZP_07988028.1| hypothetical protein SSA3_29396 [Streptomyces sp. SA3_actF]
Length = 248
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 8/127 (6%)
Query: 229 ILVSIDVAVFLFEIASP-----IRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
IL+++++AVFL A P + + E +LP YGA + GEW+RL+T FLH
Sbjct: 37 ILIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPY-YGADHLVGVAEGEWYRLLTAAFLH 95
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGP 341
++H+A++ +L GP + G F +Y + + G++ S+L ++G +G
Sbjct: 96 QEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAASLGASGA 155
Query: 342 VFAIIGA 348
+F + GA
Sbjct: 156 IFGLFGA 162
>gi|110289433|gb|ABG66197.1| Rhomboid family protein, expressed [Oryza sativa Japonica Group]
gi|215686404|dbj|BAG87689.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 227
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRLVT ++LH+G+ H+ + +L+ G ++ + +G +IY + GI G+ L+S
Sbjct: 16 WRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGSVLSSLFIRN 75
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L F N + + + ++ A++ I VD +A
Sbjct: 76 SISVGASGALFGLLGAMLSELFTNWTIYTNKAAALV--TLLIVIAINLAIGILPHVDNFA 133
Query: 393 HLGAAFTGIIYGFL 406
H+G TG + GF+
Sbjct: 134 HIGGFLTGFLLGFI 147
>gi|296268056|ref|YP_003650688.1| rhomboid family protein [Thermobispora bispora DSM 43833]
gi|296090843|gb|ADG86795.1| Rhomboid family protein [Thermobispora bispora DSM 43833]
Length = 286
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 25/205 (12%)
Query: 203 KDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRN-SEFGFFSLPLLYG 261
++G R++ R + + + L++I++ ++ E+ P R S +G +S+
Sbjct: 58 QEGNRTVRRARTVFGGAPVTTARVSWTLLAINLLAYVAEVLDPERVISAYGMWSIG---- 113
Query: 262 AKINELILVGEWWRLVTPMFLHS---GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
+ GEWWRL+T FLH+ +H+ + WAL GP + + G F +Y L
Sbjct: 114 ------VYQGEWWRLITSAFLHAPPPSFWHILFNMWALYVIGPDLERLLGSARFAALYLL 167
Query: 319 GGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL 378
+ G++ +L +G +G ++ + GA F + DV ++ I + +
Sbjct: 168 SALGGSVAIYLFGVA-ALGASGAIYGLFGA----LFVVARRLGTDVRGVLWLIGI-NVLI 221
Query: 379 SFIISNFGPVDTW-AHLGAAFTGII 402
+F++ P +W HLG TG +
Sbjct: 222 TFVV----PGISWQGHLGGLVTGTV 242
>gi|345851676|ref|ZP_08804644.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
gi|345636882|gb|EGX58421.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
Length = 295
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 25/187 (13%)
Query: 229 ILVSIDVAVFL-FEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
ILV++++AVF+ + + +RN + S P + + + GEWWRLVT MF H ++
Sbjct: 87 ILVAVNLAVFIAVQSSQSLRNDLYLIGSWPPA-PFQPTQGVAEGEWWRLVTSMFTHEAVW 145
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL----HTPEPTVGGTGPVF 343
H A + +L G + + G + +Y G++G+ ++L HT ++G +G +F
Sbjct: 146 HFAFNMLSLWWLGGPLEAALGRARYLALYFCSGLAGSAFTYLLADPHT--ASLGASGAIF 203
Query: 344 AIIGAWLI----YQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTW-AHLGAAF 398
+ GA + Q+ + +IA V +F + A F IS W AH+G
Sbjct: 204 GLFGATAVLLRRLQYDMRPIIALLVINLIF-----TFAPGFNIS-------WQAHIGGLV 251
Query: 399 TGIIYGF 405
G+I G+
Sbjct: 252 AGVIIGY 258
>gi|238853801|ref|ZP_04644167.1| membrane-associated serine protease [Lactobacillus gasseri 202-4]
gi|238833610|gb|EEQ25881.1| membrane-associated serine protease [Lactobacillus gasseri 202-4]
Length = 228
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 7/150 (4%)
Query: 261 GAKINELILV-GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG 319
GA N+L+ V +WWRL T FLH G H+A + + G + G + F +Y L
Sbjct: 45 GAMNNQLVTVEHQWWRLFTAQFLHIGWLHIASNAVMIYYVGQFMEPLLGHWRFLSVYLLS 104
Query: 320 GISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKD-VSERMFQKAILST 376
GI GNL S+ + + V G + +F + G + N+ + A + + ++ AI++
Sbjct: 105 GIGGNLLSYAYGSDSVVSAGASTALFGLFGVVIALYLANRAIPAINYLGKQALALAIINL 164
Query: 377 ALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
AL S+ +D HLG +G + G +
Sbjct: 165 ALDLFASH---IDILGHLGDLISGFLLGII 191
>gi|115483002|ref|NP_001065094.1| Os10g0521900 [Oryza sativa Japonica Group]
gi|113639703|dbj|BAF27008.1| Os10g0521900, partial [Oryza sativa Japonica Group]
Length = 338
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRLVT ++LH+G+ H+ + +L+ G ++ + +G +IY + GI G+ L+S
Sbjct: 127 WRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGSVLSSLFIRN 186
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L F N + + + ++ A++ I VD +A
Sbjct: 187 SISVGASGALFGLLGAMLSELFTNWTIYTNKAAALV--TLLIVIAINLAIGILPHVDNFA 244
Query: 393 HLGAAFTGIIYGFL 406
H+G TG + GF+
Sbjct: 245 HIGGFLTGFLLGFI 258
>gi|383821590|ref|ZP_09976832.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
gi|383332932|gb|EID11395.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
Length = 248
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 39/225 (17%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L++++V VFL + P EF +L + + GE++RL+T FLH GL H+
Sbjct: 42 LIAVNVLVFLLQAVLPGFTREF------VLQPYAVAD----GEFYRLLTSAFLHYGLTHI 91
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTPE-PTVGGTGPVFAIIG 347
+ WAL GP + + G F +Y L + G+ L L P T G +G +F + G
Sbjct: 92 LFNMWALYVVGPALEAALGRLRFVGLYALSALGGSVLVYLLSAPNAATAGASGAIFGLFG 151
Query: 348 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSF-----IISNFGPVDTW-AHLGAAFTGI 401
A F + DV + AI+ L F +IS G +W HLG FTG
Sbjct: 152 A----TFVVGKRLNMDVR---WVAAIIVINLVFTFVFPLIS--GQAISWQGHLGGLFTGA 202
Query: 402 IYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFV 446
+ + RNS++ + Q A +L++F + +
Sbjct: 203 A-------VAAAYTYAPRNSRD-----VVQIAATVAALVLFAVLI 235
>gi|297564157|ref|YP_003683130.1| rhomboid family protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848606|gb|ADH70624.1| Rhomboid family protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 306
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 268 ILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327
+L GEW+RL+T FLH +FH+ + +A+ G Q+ + G F ++ LG +G++ S
Sbjct: 133 VLPGEWYRLLTAAFLHGSIFHLLFNGYAMYLLGTQLERWLGHVRFLTLWVLGAFAGSVLS 192
Query: 328 FLHTPEP-TVGGTGPVFAIIGAWLI 351
L P +VG +G +FA+ GA L+
Sbjct: 193 LLAEPNQFSVGASGAIFALFGAVLV 217
>gi|197302289|ref|ZP_03167348.1| hypothetical protein RUMLAC_01016 [Ruminococcus lactaris ATCC
29176]
gi|197298720|gb|EDY33261.1| peptidase, S54 family [Ruminococcus lactaris ATCC 29176]
Length = 211
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVG-EWWRLVTPMFLHSGLFH 288
L+ +++AVF+ + S + ++E G+F L +GA +IL E++R T MFLH G+ H
Sbjct: 13 LIIVNIAVFM--VLSLLGDTENGYFMLH--HGAMYEPMILENQEYYRFFTCMFLHFGIQH 68
Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF----LHTPEP-TVGGTGPVF 343
+ + L G Q+ G + LIY + G+ G+ SF +H + + G +G +F
Sbjct: 69 LLNNMVMLGALGWQLEPVIGKVKYLLIYFISGLGGSGLSFAWNVMHEEQSVSAGASGAIF 128
Query: 344 AIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGII 402
++GA L N+ + D+S + +L + S VD AH+G G I
Sbjct: 129 GLMGALLYVVIANRGRLG-DLSGKGMMLMVLLGLYCGMTST--GVDNLAHIGGLVCGFI 184
>gi|212722852|ref|NP_001132594.1| uncharacterized protein LOC100194066 [Zea mays]
gi|194694850|gb|ACF81509.1| unknown [Zea mays]
Length = 248
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRLVT ++LH+G+ H+ + +L+ G ++ + +G +IY + G+ G+ L+S
Sbjct: 37 WRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGYVRVGIIYLVSGVGGSVLSSLFIRN 96
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L F N + A + ++ A++ I VD +A
Sbjct: 97 NISVGASGALFGLLGAMLSELFTNWTIYANKAAA--LVTLLVVIAINLAIGILPHVDNFA 154
Query: 393 HLGAAFTGIIYGFL 406
H+G TG + GF+
Sbjct: 155 HIGGFLTGFLLGFV 168
>gi|399217023|emb|CCF73710.1| unnamed protein product [Babesia microti strain RI]
Length = 949
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
L G N++ E++RLV MFLH + H+ + + + +G F +Y +
Sbjct: 189 LGGLNSNKIRNYKEYYRLVWSMFLHGSVIHMVFNLCCQIQSLWMIEPDWGFFRTAGLYFV 248
Query: 319 GGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
GI GNL S + P TVG +G ++ ++GA + Y + I + S +F +
Sbjct: 249 SGIFGNLLSAILDPCGTTVGSSGAMYGLMGALIPYCIEYWKTIPRPFSILIFNCIFIIIG 308
Query: 378 LSFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
L I G D +AHLG GI++GF T
Sbjct: 309 L--ISGLAGYTDNYAHLGGCIAGILWGFGT 336
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 5/153 (3%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTL 318
L G N++ E++RLV MFLH + H+ + + + +G F +Y +
Sbjct: 674 LGGLNSNKIRNYKEYYRLVWSMFLHGSVIHMVFNLCCQIQSLWMIEPDWGFFRTAGLYFV 733
Query: 319 GGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA 377
GI GNL S + P TVG +G ++ ++GA + Y ++ D + +++
Sbjct: 734 SGIFGNLLSAILDPCGTTVGSSGAMYGLMGALIPYCIVR--ILENDCASKVYIVLCDIVC 791
Query: 378 LSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPL 410
+ +I + W +G G+++GF T L
Sbjct: 792 GNLLIDVVIWIVDW--VGGFIAGVLWGFGTIDL 822
>gi|331092038|ref|ZP_08340869.1| hypothetical protein HMPREF9477_01512 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402239|gb|EGG81810.1| hypothetical protein HMPREF9477_01512 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 203
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 9/158 (5%)
Query: 255 SLPLLYGAKINELILVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFF 313
S L +GA L+L E++RL+T +FLH G H+ + L G + + G F +
Sbjct: 34 SYMLEHGAMFVPLVLGNHEYYRLITSIFLHFGFAHLMNNMVMLFFLGSILEEEIGSFKYL 93
Query: 314 LIYTLGGISGN-LTSF--LHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERM 368
L+Y + G++GN L++F L T E + G +G +F +IGA LI +N + M
Sbjct: 94 LLYFVSGVAGNILSAFMDLKTGEFVISAGASGAIFGVIGALLIIVTKNHGHLRTLDGRGM 153
Query: 369 FQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
+ S F + VD AH+G +GI+ F+
Sbjct: 154 VFMVVCSLYHGFTSTG---VDNMAHIGGLLSGILLAFI 188
>gi|218557587|ref|YP_002390500.1| hypothetical protein ECS88_0691 [Escherichia coli S88]
gi|432361433|ref|ZP_19604618.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE5]
gi|218364356|emb|CAR02031.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli S88]
gi|430889951|gb|ELC12598.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE5]
Length = 625
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
GA + L L E WRL++ +FLHS H+ ++ +ALL G + G + +I+ G
Sbjct: 49 GANVASLTLSDESWRLLSSVFLHSSFSHLLMNMFALLVVGTVAERILGKWRLLIIWLFSG 108
Query: 321 ISGNLTSFLHTPEP------TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ-KAI 373
I G L S +T ++G +G + I GA + Q + R+F +
Sbjct: 109 IFGGLISACYTLRESEQIVISIGASGAIMGIAGAAIATQLASGAGTHHKNQRRVFPLLGM 168
Query: 374 LSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
++ L + G +D H+G G G+L+ LV
Sbjct: 169 VALTLLYGTRQTG-IDNACHIGGLIAGGTLGWLSARLV 205
>gi|260943073|ref|XP_002615835.1| hypothetical protein CLUG_04717 [Clavispora lusitaniae ATCC 42720]
gi|238851125|gb|EEQ40589.1| hypothetical protein CLUG_04717 [Clavispora lusitaniae ATCC 42720]
Length = 596
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+W+R+VTP+FLH+G H+A + LT G V + G F +IY GI+G L +
Sbjct: 271 QWYRVVTPIFLHAGFLHIAFNMLLQLTMGAAVERQIGWLKFGVIYMASGIAGFLLGANFS 330
Query: 332 PE--PTVGGTGPVFAIIGA-WLIYQF---QNKDLIAKDVSERMFQKAILSTALSFIISNF 385
P+ + G +G +F II L++ F +N ++ + +SF +
Sbjct: 331 PDGIASTGASGALFGIIATNMLLFIFSGRKNTNMYGTKRYGLFMAVMVFEVLVSFALGLL 390
Query: 386 GPVDTWAHLGAAFTGII 402
+D ++H+G G++
Sbjct: 391 PGLDNFSHIGGFCMGLL 407
>gi|74793159|sp|Q6IUY1.1|RHBL3_TOXGO RecName: Full=Rhomboid-like protease 3
gi|48093077|gb|AAT39987.1| rhomboid-like protease ROM3 [Toxoplasma gondii]
Length = 263
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WR+VTP+FLH+ + H+ L+ +L ++ + YG F + Y L I GNL S L P
Sbjct: 84 WRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGNLLSMLMQPW 143
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSE---RMFQKAILSTALSFIISNFG-PV 388
+VG + F IIG ++ +SE R++ I A+ +FG V
Sbjct: 144 ALSVGASTAGFGIIGG----MAAEVSVVWCKLSEELKRIYSMDICILAVLIYFLSFGRTV 199
Query: 389 DTWAHLGAAFTGI 401
DT+ HLG G+
Sbjct: 200 DTFGHLGGFLAGV 212
>gi|194688302|gb|ACF78235.1| unknown [Zea mays]
Length = 336
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGN-LTSFLHTP 332
WRLVT ++LH+G+ H+ + +L+ G ++ + +G +IY + G+ G+ L+S
Sbjct: 125 WRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGYVRVGIIYLVSGVGGSVLSSLFIRN 184
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++GA L F N + A + + ++ A++ I VD +A
Sbjct: 185 NISVGASGALFGLLGAMLSELFTNWTIYANKAAALV--TLLVVIAINLAIGILPHVDNFA 242
Query: 393 HLGAAFTGIIYGFL 406
H+G TG + GF+
Sbjct: 243 HIGGFLTGFLLGFV 256
>gi|397642301|gb|EJK75152.1| hypothetical protein THAOC_03139 [Thalassiosira oceanica]
Length = 399
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 11/202 (5%)
Query: 216 QRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILV--GEW 273
QR S ++ + + + V ++ +A N G + L Y N +++V GE
Sbjct: 108 QRFAPCSVMFCVVQCIILPVMMWQCGVAPLSINPMIGPYPDTLNYWGAKNAVLIVEDGEL 167
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
+RLVTP+FLH+GL H+ + G + K +G + +IY + ++ S P+
Sbjct: 168 YRLVTPIFLHAGLIHLLGNVMVQAEVGNRWEKEWGSVIWMIIYMGSAVGSSIASTCFMPD 227
Query: 334 P-TVGGTGPVFAIIGAWLIYQF--------QNKDLIAKDVSERMFQKAILSTALSFIISN 384
+VG +G V + GA F +DL A+ +R + + ++S
Sbjct: 228 NISVGSSGAVMGLFGAKFSEIFLLCCERSRSIRDLAAEKARKRQVCLVVGGLIIVSLMSF 287
Query: 385 FGPVDTWAHLGAAFTGIIYGFL 406
VD AHLG G + G +
Sbjct: 288 IPYVDWAAHLGGMVAGFVLGLV 309
>gi|297842567|ref|XP_002889165.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335006|gb|EFH65424.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 351
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 5/148 (3%)
Query: 261 GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGG 320
G N L E WR++T +LHSGLFH+ ++ +L+ G + + +GP +IY L G
Sbjct: 110 GLSWNTLTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYLLSG 169
Query: 321 ISGNLTSFLHTPE-PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
I G+L + L ++ F +IGA L +N +L +S + I +
Sbjct: 170 IMGSLFAVLFVRNISSISSGAAFFGLIGAMLSALAKNWNLYTGKISALVIIFTIFTVN-- 227
Query: 380 FIISNFGP-VDTWAHLGAAFTGIIYGFL 406
I+ F P +D +A++G +G + GF+
Sbjct: 228 -ILIGFLPFIDNFANIGGFISGFLLGFV 254
>gi|363807474|ref|NP_001242137.1| uncharacterized protein LOC100805186 [Glycine max]
gi|255644920|gb|ACU22960.1| unknown [Glycine max]
Length = 384
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRLVT M+LH+G+FH+ + +L G ++ + +G L++ + G G+L S L
Sbjct: 125 WRLVTCMWLHAGVFHLLANMLGILVIGIRLEQEFGFVLIGLLFFISGFGGSLLSALFIQS 184
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWA 392
+VG +G +F ++G L N + ++ + ++ ++ + VD +A
Sbjct: 185 NISVGASGALFGLLGGMLSELITNWSIYDNKLAALL--TLVIIIVINLAVGILPHVDNFA 242
Query: 393 HLGAAFTGIIYGFLTCPLVQLGDASSR 419
H+G TG + GF+ Q G + R
Sbjct: 243 HIGGFLTGFLLGFVFLIRPQFGWVNQR 269
>gi|449466454|ref|XP_004150941.1| PREDICTED: inactive rhomboid protein 1-like, partial [Cucumis
sativus]
Length = 374
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WRL T +H+GL H+ ++ +++ G Q+ YGP +IY L +G L + L
Sbjct: 110 WRLFTFPCMHAGLIHLVINLGSVIFVGIQLELEYGPVRTGIIYLLSAYTGTLVAALFAQN 169
Query: 334 -PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG-----P 387
P+VG +G +F ++GA + +N L ++R L + L+ NFG
Sbjct: 170 SPSVGSSGALFGLLGAMISGIIRNWKL----YTDRFLA---LGSVLAVFAINFGLGLLPY 222
Query: 388 VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYAN 434
+D +A++G G++ GF+ L L D + +Q +G +L + N
Sbjct: 223 IDNFANVGGLVAGVLLGFII--LFTLQDRQEK-AQTKGYSLSYGFKN 266
>gi|403343812|gb|EJY71236.1| Rhomboid-1 [Oxytricha trifallax]
Length = 286
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 17/161 (10%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGP-FTFFLIYTLGGISGNLTSFL 329
G +RL+ PMFLHSG FH+ + ++ G + KS G + + L+ +G I GN+ S +
Sbjct: 93 GHLYRLIMPMFLHSGFFHIFWNIFSFFMIGFSIEKSIGTWYKYALLLFVGAIGGNIFSAV 152
Query: 330 HTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI---LSTALSFIISNF 385
P VG + +FA++ + + N D ++ FQ I L +F+
Sbjct: 153 VDPYNFGVGASTSLFAVLACMCTWFYINYD----NLGPMKFQYLIFFGLMVGFAFMNGFL 208
Query: 386 GP---VDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQE 423
P VD+W H+G G IYG L + L A S ++
Sbjct: 209 FPGSGVDSWGHMG----GFIYG-LALSFLLLKGADSEQQKK 244
>gi|326529191|dbj|BAK00989.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 326
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FL 329
+WWRL + ++LH+GL H+ ++ +LL G ++ + +G +IY L G G++ S FL
Sbjct: 114 QWWRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYLLSGFGGSVLSALFL 173
Query: 330 HTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD 389
+VG +G +F ++G+ L N + + + + A++ I D
Sbjct: 174 RNHYISVGASGALFGLLGSMLSELIMNWTIYSNKAAA--ITTLLFIIAINLAIGILPHAD 231
Query: 390 TWAHLGAAFTGIIYGFLTCPLVQLG 414
+AH+G +G ++GF+ Q G
Sbjct: 232 NFAHIGGFVSGFLFGFVLLARPQFG 256
>gi|311742190|ref|ZP_07716000.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
gi|311314683|gb|EFQ84590.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
Length = 283
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 13/137 (9%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIY-TLGGISGNLTSFL 329
G +WRL+T FLH+G+ H+ + +AL FGP V ++ G + Y T+ SG + L
Sbjct: 120 GGYWRLLTSAFLHAGVLHLLFNMYALYLFGPFVERALGSARYVAAYLTMAVFSGAVVYLL 179
Query: 330 HTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P TVG +G VF + G L+ + K +DV + ++ A++ +IS P
Sbjct: 180 TDPRTFTVGASGAVFGLFGYALVLLVRAK----QDV-----RTLLVLLAVNGVIS-LAPN 229
Query: 389 DTW-AHLGAAFTGIIYG 404
+W HLG G+ G
Sbjct: 230 ISWQGHLGGFIAGLTLG 246
>gi|224011189|ref|XP_002295369.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209583400|gb|ACI64086.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 148
Score = 60.1 bits (144), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL TP+FLH+GL H+ + + G + K +G + ++Y ++ S
Sbjct: 4 GEWWRLFTPIFLHAGLIHLVGNVMVQIESGNRWEKEWGSLIWLVVYIGSAFGSSILSVCV 63
Query: 331 TPEPT-VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA----------------I 373
P+ VG +G V + GA +F L+ + SE ++A I
Sbjct: 64 MPDQIGVGSSGAVMGLFGA----KFAEILLMCCERSETRAERAGERSRKEQACLVIGGII 119
Query: 374 LSTALSFIISNFGPVDTW-AHLGAAFTGIIYGFL 406
+ A+SFI P W AHLG G + G +
Sbjct: 120 IVMAMSFI-----PYVDWAAHLGGLCAGFVIGMV 148
>gi|308535165|ref|YP_002137287.2| rhomboid-like membrane protein [Geobacter bemidjiensis Bem]
gi|308052510|gb|ACH37491.2| rhomboid-related membrane protein [Geobacter bemidjiensis Bem]
Length = 274
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 224 LYLISILVS----IDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 279
YL+S+LVS D+ F SP +NS L LL ++ +G W L++
Sbjct: 58 FYLLSLLVSGRRGFDMNPLSF--LSPDQNS------LLLLGATGTIPVLELGRVWSLISA 109
Query: 280 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT 339
+LH GL H+ + AL GP V +G F+IYTL G++G + SF T+G +
Sbjct: 110 NYLHGGLLHILFNMMALRQIGPWVSAEFGASRMFVIYTLSGVAGYVASFFAGIPFTIGAS 169
Query: 340 GPVFAIIGA 348
V +IGA
Sbjct: 170 ASVCGLIGA 178
>gi|291561790|emb|CBL40590.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[butyrate-producing bacterium SS3/4]
Length = 206
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 91/192 (47%), Gaps = 16/192 (8%)
Query: 225 YLISILVSIDVAVFLF-EIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
Y+ +L++++V FL+ EI ++ F + + A + + GE++RL+T MF+H
Sbjct: 10 YVNGLLIALNVLFFLYLEITDSSEDAYFMYTKGAMFAPAVLED----GEYYRLLTAMFMH 65
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL-HTPEP---TVGGT 339
G+ H+ + L G + ++ G + + Y L GI N S + HT + + G +
Sbjct: 66 FGIRHIMNNMLVLFVIGDNLERALGHVKYLIFYLLCGIGSNWVSMMAHTADTMTVSAGAS 125
Query: 340 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 399
G +F ++G L N+ + + ++ S L + + VD AHL +
Sbjct: 126 GAIFGVVGGLLYVVTANRGQLEDLNTRQLVIMIFFSLYLGYTSTG---VDNIAHL----S 178
Query: 400 GIIYGFLTCPLV 411
G++ GF+ ++
Sbjct: 179 GLVIGFVLAIIL 190
>gi|325663211|ref|ZP_08151661.1| hypothetical protein HMPREF0490_02402 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470665|gb|EGC73895.1| hypothetical protein HMPREF0490_02402 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 209
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF-- 328
GE++RL T MFLH G H+ + + L G + G + + +Y L G+ GNL S
Sbjct: 51 GEYYRLFTSMFLHFGFEHLMNNMFILGVIGWNLELEIGKWKYLAVYLLSGLMGNLLSAWM 110
Query: 329 -LHTPEPTV--GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF 385
+ T E + G +G +F +IGA +N+ I S + + S L F
Sbjct: 111 DIQTGEYAISAGASGAIFGVIGALFYVALRNRGRIGNISSRGLAFMVLCSLYLGFTSKG- 169
Query: 386 GPVDTWAHLGAAFTGII 402
VD AH+G +GI+
Sbjct: 170 --VDNSAHIGGVISGIL 184
>gi|315446599|ref|YP_004079478.1| hypothetical protein Mspyr1_51170 [Mycobacterium gilvum Spyr1]
gi|315264902|gb|ADU01644.1| uncharacterized membrane protein [Mycobacterium gilvum Spyr1]
Length = 279
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 230 LVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHV 289
L+ I++ F ++ASP FG +S + GE +RL+T FLH GL H+
Sbjct: 73 LIGINLLAFALQMASPGLQRAFGLWS----------PAVADGEMYRLLTSAFLHFGLTHL 122
Query: 290 ALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAIIGA 348
A + AL GP + + G F +Y + + G++ +L T T G +G VF + GA
Sbjct: 123 AFNMLALYFVGPPLEAALGRARFVTLYLVSALGGSVLVYLLTFNALTAGASGAVFGLFGA 182
Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVD-TW-AHLGAAFTG--IIYG 404
F + DV M +L+ A +F+I F + +W H+G TG +
Sbjct: 183 ----TFVVGRKLNMDVRSVM-AIIVLNLAFTFLIPLFTSQNISWQGHIGGLVTGALVAAA 237
Query: 405 FLTCPLVQ 412
F+ P Q
Sbjct: 238 FVYAPRAQ 245
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,877,610,049
Number of Sequences: 23463169
Number of extensions: 282269694
Number of successful extensions: 729356
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2782
Number of HSP's successfully gapped in prelim test: 1856
Number of HSP's that attempted gapping in prelim test: 724205
Number of HSP's gapped (non-prelim): 4930
length of query: 466
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 320
effective length of database: 8,933,572,693
effective search space: 2858743261760
effective search space used: 2858743261760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)