BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012312
(466 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP
PE=1 SV=2
Length = 507
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 238 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL 297
FL EI N+E + +GAK N LI GEWWRL+TP+ LH G+ H+A + AL
Sbjct: 192 FLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALW 246
Query: 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
+ G V + YG F LIY GI+G++ SF+ +P P+ G +G +F +GA L N+
Sbjct: 247 SVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNR 306
Query: 358 DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDAS 417
+ + + + I++ F +SN +D H+G G+I GF + L A
Sbjct: 307 KMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFAAAALGLPKAG 359
Query: 418 S 418
+
Sbjct: 360 A 360
>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168)
GN=ydcA PE=3 SV=1
Length = 199
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
GEWWRL+TP+ LH+G H+ + ++ F P + + G F L+Y GI GN+ +++
Sbjct: 56 GEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVT 115
Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
P VG +G +F + G +L +LI ++ S+ + + +SFI SN +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSN---I 172
Query: 389 DTWAHLGAAFTGIIYGFL 406
+ AHL G + FL
Sbjct: 173 NMMAHLFGLCGGFLLSFL 190
>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1
Length = 281
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 28/195 (14%)
Query: 230 LVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
LV +++AV+ ++I ASP+ + E S +L+GA I +L L G+WWR M LHS
Sbjct: 27 LVLLNIAVYFYQIVFASPLDSRE----SNLILFGANIYQLSLTGDWWRYPISMMLHSNGT 82
Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTPEPT----------- 335
H+A +C AL G ++YG F IY + GI L +++ E +
Sbjct: 83 HLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYYEISNSDLWTDSTVY 142
Query: 336 ----VGGTGPVFAIIGAWLIYQFQ------NKDLIAKDVSERMFQKAILSTALSFIISNF 385
VG +G + I A +IY + N + + + I AL+ I
Sbjct: 143 ITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYNLIAMIALTLINGLQ 202
Query: 386 GPVDTWAHLGAAFTG 400
VD AH+G A G
Sbjct: 203 SGVDNAAHIGGAIIG 217
>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1
Length = 283
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 20/188 (10%)
Query: 227 ISILVSIDVAVFLFEIASPIRNSEFGFFSLP---LLYGAKINELILVGEWWRLVTPMFLH 283
I I+ + +AV++ +A+ + +E P +++GA I ELI VGE WRL+ P+FLH
Sbjct: 62 IIIISFVQIAVYIASLAAGLAPNEI-LAPTPQTLVMFGANIPELIRVGEIWRLICPLFLH 120
Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLHTPEPTVGGTGP 341
LFH+ ++ W + G + + YG +Y G+ N+ S L + G +
Sbjct: 121 LNLFHILMNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTA 180
Query: 342 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF---IISNFGP-VDTWAHLGAA 397
VFA+IG Q LI + +R AI+S + +S+FG +D+ H+G
Sbjct: 181 VFALIGV----QLAELALIWHAIQDR--NSAIISVCICLFFVFVSSFGSHMDSVGHIG-- 232
Query: 398 FTGIIYGF 405
G++ GF
Sbjct: 233 --GLVMGF 238
>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1
Length = 641
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 8/160 (5%)
Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHV--ALSCWALLTFGPQVCKSYGPFTFFLIY 316
L G + N + E +RL T M++H G H+ LSC + + + +G L++
Sbjct: 328 LGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILW--IIEPDWGFLRTTLLF 385
Query: 317 TLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 375
LGGISGNL S + P TVG +G ++A++GA + Y + I + +F ++
Sbjct: 386 FLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFMIVVI- 444
Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
+ + G D +AH+G A GI++GF + V D
Sbjct: 445 --IGILTGMAGFTDNYAHMGGALGGILWGFASITTVSACD 482
>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1
Length = 263
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
WR+VTP+FLH+ + H+ L+ +L ++ + YG F + Y L I GNL S L P
Sbjct: 84 WRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGNLLSMLMQPW 143
Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSE---RMFQKAILSTALSFIISNFG-PV 388
+VG + F IIG ++ +SE R++ I A+ +FG V
Sbjct: 144 ALSVGASTAGFGIIGG----MAAEVSVVWCKLSEELKRIYSMDICILAVLIYFLSFGRTV 199
Query: 389 DTWAHLGAAFTGI 401
DT+ HLG G+
Sbjct: 200 DTFGHLGGFLAGV 212
>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
Length = 857
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +IY L GI+GNL S +
Sbjct: 654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 713
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F I+ + Q+ ++A+ R F K + F +D
Sbjct: 714 PYRAEVGPAGSQFGILACLFVELIQSWQILAQ--PWRAFTKLLCVVLFLFAFGLLPWIDN 771
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
+AH+ +G F P + G + Y C+ +I +F+ +
Sbjct: 772 FAHISGFISGFFLSFAFLPYISFGR-------------LDMYRKRCQIIIFLVVFLGLFA 818
Query: 451 SFIFVF 456
+ +F
Sbjct: 819 GLVVLF 824
>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2
Length = 856
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +IY L GI+GNL S +
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFL 712
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFAFGLLPWIDN 770
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLG 414
+AH+ +G+ F P + G
Sbjct: 771 FAHISGFVSGLFLSFAFLPYISFG 794
>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2
Length = 855
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +IY L G++GNL S +
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFTFGLLPWIDN 769
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLG 414
+AH+ +G+ F P + G
Sbjct: 770 FAHISGFISGLFLSFAFLPYISFG 793
>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +IY L G++GNL S +
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPW--RAFFKLLAVVLFLFTFGLLPWIDN 769
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLG 414
+AH+ +G+ F P + G
Sbjct: 770 FAHISGFISGLFLSFAFLPYISFG 793
>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1
Length = 855
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +IY L G++GNL S +
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPW--RAFFKLLAVVLFLFTFGLLPWIDN 769
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLG 414
+AH+ +G+ F P + G
Sbjct: 770 FAHISGFISGLFLSFAFLPYISFG 793
>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2
SV=1
Length = 856
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +IY L G++GNL S +
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFAFGLLPWIDN 770
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLG 414
+AH+ +G+ F P + G
Sbjct: 771 FAHISGFVSGLFLSFAFLPYISFG 794
>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +IY L G++GNL S +
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPW--RAFFKLLAVVLFLFTFGLLPWIDN 769
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLG 414
+AH+ +G+ F P + G
Sbjct: 770 FAHISGFISGLFLSFAFLPYISFG 793
>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1
Length = 856
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +IY L G++GNL S +
Sbjct: 653 QFYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F I+ + FQ+ ++A+ R F K + F +D
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFTFGLLPWIDN 770
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLG 414
+AH+ +G+ F P + G
Sbjct: 771 FAHISGFISGLFLSFAFLPYISFG 794
>sp|C8VCL5|Y0929_EMENI Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=AN10929 PE=3 SV=1
Length = 503
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 252 GFFSLPLLY-GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPF 310
GF +P + G +++ +W+R + PMFLHSG H+ + +T G + + G +
Sbjct: 229 GFDGVPNPHPGGSLDDKPAPDQWFRFIIPMFLHSGFVHIGFNLLVQMTMGADMERMIGWW 288
Query: 311 TFFLIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVS 365
+ L+Y GI G + ++ E + G +G +F I+ + L+Y + ++
Sbjct: 289 RYGLVYLSSGIWGFVLGGNYAGQGEASCGCSGALFGILALFVLDLLYGWNDRQ---NPWV 345
Query: 366 ERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEG 425
E + +L A+SF++ +D ++HLG G+ G S N+ E
Sbjct: 346 ELIIM--VLGIAVSFVLGLLPGLDNFSHLGGFTMGLALGLCV--------MRSPNALRER 395
Query: 426 ITLIR 430
I L R
Sbjct: 396 IGLAR 400
>sp|A0JPA1|RHDF2_XENTR Inactive rhomboid protein 2 OS=Xenopus tropicalis GN=rhbdf2 PE=2
SV=1
Length = 826
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 13/186 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +IY L GI+GNL S L
Sbjct: 623 QFYRLWLSLFLHAGVIHCCVSVVFQMTVLRDLEKLAGWLRISIIYILSGITGNLASALFL 682
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F ++ + FQ+ ++AK + F K + F+ +D
Sbjct: 683 PYRAEVGPAGSQFGLLACLFVELFQSWQILAK--PWKAFLKLLGIVLFLFLFGLLPWIDN 740
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
AH+ +G++ F P + G A R+ A SL+VF L
Sbjct: 741 IAHIFGFLSGLLLSFSFLPYITFGTADK----------FRKRAMIIISLLVFVGLFASLV 790
Query: 451 SFIFVF 456
+++V+
Sbjct: 791 IWLYVY 796
>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1
Length = 827
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 13/186 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +I+ L GI+GNL S +
Sbjct: 624 QFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFL 683
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F ++ + FQ+ L+ + + AI+ FI +D
Sbjct: 684 PYRAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFLNLSAIV--LFLFICGLLPWIDN 741
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
AH+ +G++ F P + G +S ++ + L+ SL+VF L
Sbjct: 742 IAHIFGFLSGLLLAFAFLPYITFG--TSDKYRKRALILV--------SLLVFAGLFASLV 791
Query: 451 SFIFVF 456
+++V+
Sbjct: 792 IWLYVY 797
>sp|P44783|GLPG_HAEIN Rhomboid protease GlpG OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=glpG PE=1 SV=1
Length = 192
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG-GISGNLTSFLH 330
E WR ++ +H H+ + FG + +++G ++Y + I+G + +++
Sbjct: 49 EVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVS 108
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG-PVD 389
P G +G V+A++G I N L D+ E F ++ AL FI FG +
Sbjct: 109 GP-AFFGLSGVVYAVLGYVFIRDKLNHHLF--DLPEGFFTMLLVGIALGFISPLFGVEMG 165
Query: 390 TWAHLGAAFTGIIYGFLTCPL 410
AH+ G+I+GF+ L
Sbjct: 166 NAAHISGLIVGLIWGFIDSKL 186
>sp|Q695U0|RHBL1_TOXGO Rhomboid-like protease 1 OS=Toxoplasma gondii GN=ROM1 PE=2 SV=1
Length = 293
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 28/198 (14%)
Query: 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLL--------YGAKINELILVGEWWRLV 277
L S++++I + ++F I + ++E LPL+ +GA LI G+ WRL+
Sbjct: 59 LKSVVLAISIVDWIFYIVTVCLDTE-----LPLIPAANILVHFGANYPPLIKQGQVWRLL 113
Query: 278 TPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL---TSFLHTPEP 334
P+FLH+ FHV + + L G + + YG F +Y I GNL T+F
Sbjct: 114 LPVFLHANFFHVFFNVFFQLRMGFTIERRYGLLKFTGLYFASAIYGNLLSATAFF-CNSL 172
Query: 335 TVGGTGPVFAIIG------AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
VG + F +IG A ++ +++D + + M +L L F + N G +
Sbjct: 173 KVGASTAGFGLIGIQICEMALTWHRMRHRDRMLTN----MVSFVLLMVLLMFTL-NGGSI 227
Query: 389 DTWAHLGAAFTGIIYGFL 406
D HLG G G L
Sbjct: 228 DQMGHLGGLLCGFSIGML 245
>sp|Q6PJF5|RHDF2_HUMAN Inactive rhomboid protein 2 OS=Homo sapiens GN=RHBDF2 PE=1 SV=2
Length = 856
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 13/186 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++RL +FLH+G+ H +S +T + K G +I+ L GI+GNL S +
Sbjct: 653 QFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFL 712
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F ++ + FQ+ L+ + + AI+ FI +D
Sbjct: 713 PYRAEVGPAGSQFGLLACLFVELFQSWPLLERPWKAFLNLSAIV--LFLFICGLLPWIDN 770
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
AH+ +G++ F P + G +S ++ + L+ SL+ F L
Sbjct: 771 IAHIFGFLSGLLLAFAFLPYITFG--TSDKYRKRALILV--------SLLAFAGLFAALV 820
Query: 451 SFIFVF 456
+++++
Sbjct: 821 LWLYIY 826
>sp|Q80WQ6|RHDF2_MOUSE Inactive rhomboid protein 2 OS=Mus musculus GN=Rhbdf2 PE=1 SV=1
Length = 827
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 13/186 (6%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
+++R+ +FLH+G+ H +S +T + K G +I+ L GI+GNL S +
Sbjct: 624 QFYRIWLSLFLHAGIVHCLVSVVFQMTILRDLEKLAGWHRISIIFILSGITGNLASAIFL 683
Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
P VG G F ++ + FQ+ L+ + AI+ FI +D
Sbjct: 684 PYRAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFFNLSAIV--LFLFICGLLPWIDN 741
Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
AH+ +G++ F P + G +S ++ + L+ SL+VF L
Sbjct: 742 IAHIFGFLSGMLLAFAFLPYITFG--TSDKYRKRALILV--------SLLVFAGLFASLV 791
Query: 451 SFIFVF 456
+++++
Sbjct: 792 LWLYIY 797
>sp|A2AGA4|RHBL2_MOUSE Rhomboid-related protein 2 OS=Mus musculus GN=Rhbdl2 PE=1 SV=1
Length = 302
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 226 LISILVSI-DVAVFLF-EIASPIRN---SEFGFFSLPLLYGAKINELILVGEWWRLVTPM 280
L IL+S+ ++AVF++ + P + + G PL Y + E E WR ++ M
Sbjct: 72 LFIILISLAELAVFIYYAVWKPQKQWITLDTGILESPLTYCPEKRE-----EAWRFISYM 126
Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGT 339
+H+G+ H+ + + G + + L+Y G ++G+L S + P + VG +
Sbjct: 127 LVHAGVQHIVGNLLMQIVLGIPLEMVHKGLRVGLVYLAGVLAGSLASSIFDPLKSLVGAS 186
Query: 340 GPVFAIIGAWLIYQFQN-KDLI-AKDVSERMFQKAILSTALSFII-------SNFGPVDT 390
G V+A++G + + N +++I A + + I+++ + F + +N PV
Sbjct: 187 GGVYALMGGYFMNVIVNFREMIPAFGIVRLLVIILIVASDMGFALYRRFFVPANGSPVSF 246
Query: 391 WAHLGAAFTGIIYGF 405
AH+ F G+ G+
Sbjct: 247 AAHIAGGFAGMSIGY 261
>sp|Q6GV23|RHBL5_TOXGO Rhomboid-like protease 5 OS=Toxoplasma gondii GN=ROM5 PE=1 SV=1
Length = 841
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 264 INELILVGEWWRLVTPMFLHSGLFHVAL--SCWA--LLTFGPQVCKSYGPFTFFLIYTLG 319
N++ GE +R+V MFLH G H+ L SC A L P ++G ++ +G
Sbjct: 455 TNKVRNYGEMFRVVWGMFLHGGWMHLLLNVSCQAQTLWILEP----AWGFLRTLSLWIVG 510
Query: 320 GISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIA 361
G+SG+L S + P TVG +G + ++GA + + + D IA
Sbjct: 511 GVSGSLLSAVANPCTVTVGSSGAFYGLLGALVPFSIEYWDHIA 553
>sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1
Length = 346
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 276 LVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE-- 333
++ F H +H+ ++ AL +FG + G FF +Y I+G+L S L P+
Sbjct: 186 IIGSAFSHQEFWHLGMNMLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFS-LWYPKLA 244
Query: 334 ------PTVGGTGPVFAIIGAWLIYQFQNKDLI-----AKDVSERMFQKAILSTALSFII 382
P++G +G +F ++G Y F + ++ + F ++ A +
Sbjct: 245 RLAIVGPSLGASGALFGVLGC-FSYLFPHAKILLFVFPVPGGAWVAFLASVAWNAAGCAL 303
Query: 383 SNFGPVDTWAHLGAAFTGIIYGFLTCPLVQ 412
+G D AHLG + G++YG+ V+
Sbjct: 304 -RWGSFDYAAHLGGSMMGVLYGWYISKAVE 332
>sp|P58872|RHBL3_HUMAN Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1
Length = 404
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTP 332
WR +T +F+H+G+ H+ L+ L G + +G L+Y G ++G+L S
Sbjct: 212 WRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMT 271
Query: 333 EPTVGGTGPVFAIIGAWL 350
P VG +G V+A++ A L
Sbjct: 272 APVVGSSGGVYALVSAHL 289
>sp|Q76NQ1|RHDF1_DROME Inactive rhomboid protein 1 OS=Drosophila melanogaster GN=rho-5 PE=2
SV=1
Length = 1429
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL-- 329
+ +RL+T + +H+G+ H+A++ F + + G ++Y + G +GNLTS +
Sbjct: 1092 QLYRLLTSLCMHAGILHLAITLIFQHLFLADLERLIGTVRTAIVYIMSGFAGNLTSAILV 1151
Query: 330 -HTPE--PTVGGTGPVFAIIG--AWLIYQFQNKDLIA 361
H PE P+ +G V ++I W+ +++ +K IA
Sbjct: 1152 PHRPEVGPSASLSGVVASLIALLVWMHWKYLHKPHIA 1188
>sp|P20350|RHOM_DROME Protein rhomboid OS=Drosophila melanogaster GN=rho PE=1 SV=2
Length = 355
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTP 332
WR + MFLH+ FH+ + L FG + +G +IY G +G+L TS + +
Sbjct: 151 WRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAGSLGTSVVDSE 210
Query: 333 EPTVGGTGPVFAIIGAWLIYQFQN----KDLIAKDVSERMFQKAILSTAL---SFIISNF 385
VG +G V+A++ A L N K + S +F L AL F S F
Sbjct: 211 VFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVIFVSCDLGYALYTQYFDGSAF 270
Query: 386 --GP-VDTWAHLGAAFTGIIYGFLT 407
GP V AHL A G+ GFL
Sbjct: 271 AKGPQVSYIAHLTGALAGLTIGFLV 295
>sp|Q8VC82|RHBL1_MOUSE Rhomboid-related protein 1 OS=Mus musculus GN=Rhbdl1 PE=2 SV=1
Length = 373
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 19/112 (16%)
Query: 258 LLYGAKINELILV------------------GEWWRLVTPMFLHSGLFHVALSCWALLTF 299
L YGA++N+ +L WR +T MF+H GL + + L
Sbjct: 147 LCYGARLNKWVLQTYHPEYMKSPLVYHPGHRARAWRFLTYMFMHVGLEQLGFNALLQLMI 206
Query: 300 GPQVCKSYGPFTFFLIYTLGGISGNLT-SFLHTPEPTVGGTGPVFAIIGAWL 350
G + +G L+Y G ++G+LT S P VGG+G V+A+ A L
Sbjct: 207 GVPLEMVHGVLRISLLYLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHL 258
>sp|Q19821|ROM1_CAEEL Rhomboid-related protein 1 OS=Caenorhabditis elegans GN=rom-1 PE=3
SV=2
Length = 356
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 21/153 (13%)
Query: 269 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF 328
L GE WR + MFLH+GL H+ + L G + ++ + IY L SG+L +
Sbjct: 162 LRGEAWRFTSYMFLHAGLNHLLGNVIIQLLVGIPLEVAHKIWRIGPIYLLAVTSGSLLQY 221
Query: 329 LHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG- 386
P VG + V+A+I A N L ++ R + +L FI +FG
Sbjct: 222 AIDPNSLLVGASAGVYALIFA----HVANVILNWHEMPLRWIRVLVL---FVFIFLDFGG 274
Query: 387 ------------PVDTWAHLGAAFTGIIYGFLT 407
V AH+ A TG+ +G++
Sbjct: 275 AIHRRFYTNDCDSVSHLAHIAGAVTGLFFGYVV 307
>sp|Q9NX52|RHBL2_HUMAN Rhomboid-related protein 2 OS=Homo sapiens GN=RHBDL2 PE=1 SV=2
Length = 303
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 90/196 (45%), Gaps = 20/196 (10%)
Query: 224 LYLISILVSIDVAVFLF-EIASPIRN---SEFGFFSLPLLYGAKINELILVGEWWRLVTP 279
+++ISI ++ ++AVF++ + P + + G P +Y + E E WR ++
Sbjct: 73 VFIISISLA-ELAVFIYYAVWKPQKQWITLDTGILESPFIYSPEKRE-----EAWRFISY 126
Query: 280 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGG 338
M +H+G+ H+ + L G + + L+Y G I+G+L S + P VG
Sbjct: 127 MLVHAGVQHILGNLCMQLVLGIPLEMVHKGLRVGLVYLAGVIAGSLASSIFDPLRYLVGA 186
Query: 339 TGPVFAIIGAWLIYQFQN-KDLIAKDVSER---MFQKAILSTALS-----FIISNFGPVD 389
+G V+A++G + + N +++I R + +L + F+ + PV
Sbjct: 187 SGGVYALMGGYFMNVLVNFQEMIPAFGIFRLLIIILIIVLDMGFALYRRFFVPEDGSPVS 246
Query: 390 TWAHLGAAFTGIIYGF 405
AH+ F G+ G+
Sbjct: 247 FAAHIAGGFAGMSIGY 262
>sp|O75783|RHBL1_HUMAN Rhomboid-related protein 1 OS=Homo sapiens GN=RHBDL1 PE=2 SV=1
Length = 438
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 19/112 (16%)
Query: 258 LLYGAKINELILV------------------GEWWRLVTPMFLHSGLFHVALSCWALLTF 299
L YGA++N+ +L WR +T MF+H GL + + L
Sbjct: 212 LCYGARLNKWVLQTYHPEYMKSPLVYHPGHRARAWRFLTYMFMHVGLEQLGFNALLQLMI 271
Query: 300 GPQVCKSYGPFTFFLIYTLGGISGNLT-SFLHTPEPTVGGTGPVFAIIGAWL 350
G + +G L+Y G ++G+LT S P VGG+G V+A+ A L
Sbjct: 272 GVPLEMVHGLLRISLLYLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHL 323
>sp|P58873|RHBL3_MOUSE Rhomboid-related protein 3 OS=Mus musculus GN=Rhbdl3 PE=2 SV=1
Length = 404
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTP 332
WR VT +F+H+G+ + L+ L G + +G L+Y G ++G+L S
Sbjct: 212 WRYVTYIFMHAGVEQLGLNVALQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMT 271
Query: 333 EPTVGGTGPVFAIIGAWL 350
P VG +G V+A++ A L
Sbjct: 272 APVVGSSGGVYALVSAHL 289
>sp|Q5R5H4|PARL_PONAB Presenilins-associated rhomboid-like protein, mitochondrial
OS=Pongo abelii GN=PARL PE=2 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 276 LVTPMFL----HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
L +PM L H LFH+A + + L +F + G F +Y G+ N S++
Sbjct: 205 LCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISNFVSYVGK 264
Query: 332 PE-----PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ-----KAILSTALSFI 381
P++G +G + ++ A + + L + F KAI++ + +
Sbjct: 265 VATGRYGPSLGASGAIMTVLAA-VCTKIPEGRLAIIFLPMFTFTAGNALKAIIAMDTAGM 323
Query: 382 ISNFGPVDTWAHLGAAFTGIIY 403
I + D AHLG A GI Y
Sbjct: 324 ILGWKFFDHAAHLGGALFGIWY 345
>sp|Q9H300|PARL_HUMAN Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo
sapiens GN=PARL PE=1 SV=2
Length = 379
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 276 LVTPMFL----HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
L +PM L H LFH+A + + L +F + G F +Y G+ N S++
Sbjct: 205 LCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISNFVSYVGK 264
Query: 332 PE-----PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ-----KAILSTALSFI 381
P++G +G + ++ A + + L + F KAI++ + +
Sbjct: 265 VATGRYGPSLGASGAIMTVLAA-VCTKIPEGRLAIIFLPMFTFTAGNALKAIIAMDTAGM 323
Query: 382 ISNFGPVDTWAHLGAAFTGIIY 403
I + D AHLG A GI Y
Sbjct: 324 ILGWKFFDHAAHLGGALFGIWY 345
>sp|Q9P7D8|YOFA_SCHPO Uncharacterized rhomboid protein P4H10.10, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP4H10.10 PE=3 SV=1
Length = 392
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327
G WW LV +F H L H+ ++C A+ +F V +G + +Y G+ GN +
Sbjct: 167 GRWWTLVVSIFSHQNLAHLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAGVFGNYVA 223
>sp|Q3B8P0|PARL_RAT Presenilins-associated rhomboid-like protein, mitochondrial
OS=Rattus norvegicus GN=Parl PE=2 SV=1
Length = 377
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 276 LVTPMFL----HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
L +PM L H LFH+A + + L +F + G F +Y G+ N S++
Sbjct: 203 LCSPMLLSTFSHFSLFHMAANMYVLWSFSTSIVNILGQEQFVAVYLSAGVISNFVSYVCK 262
Query: 332 PE-----PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ-----KAILSTALSFI 381
P++G +G + ++ A + + L + F KAI++ + +
Sbjct: 263 VATGRYGPSLGASGAIMTVLAA-VCTKIPEGRLAIIFLPVFTFTAGNALKAIIAMDTAGM 321
Query: 382 ISNFGPVDTWAHLGAAFTGIIY 403
I + D AHLG A GI Y
Sbjct: 322 ILGWKFFDHAAHLGGALFGIWY 343
>sp|Q5XJY4|PARL_MOUSE Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus
musculus GN=Parl PE=1 SV=1
Length = 377
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 276 LVTPMFL----HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
L +PM L H LFH+A + + L +F + G F +Y G+ N S++
Sbjct: 203 LCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFVAVYLSAGVISNFVSYVCK 262
Query: 332 PE-----PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ-----KAILSTALSFI 381
P++G +G + ++ A + + L + F KAI++ + +
Sbjct: 263 VATGRYGPSLGASGAIMTVLAA-VCTKIPEGRLAIIFLPVFTFTAGNALKAIIAMDTAGM 321
Query: 382 ISNFGPVDTWAHLGAAFTGIIY 403
I + D AHLG A GI Y
Sbjct: 322 ILGWKFFDHAAHLGGALFGIWY 343
>sp|Q2KHV4|PARL_BOVIN Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos
taurus GN=PARL PE=2 SV=1
Length = 377
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 15/142 (10%)
Query: 276 LVTPMFL----HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
L +PM L H LFH+A + + L +F + G F +Y G+ S++
Sbjct: 203 LCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISTFVSYVCK 262
Query: 332 PE-----PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ-----KAILSTALSFI 381
P++G +G + ++ A + + L + F KAI++ + +
Sbjct: 263 VATGRYGPSLGASGAIMTVLAA-VCTKIPEGRLAIIFLPMFTFTAGNALKAIIAMDTAGM 321
Query: 382 ISNFGPVDTWAHLGAAFTGIIY 403
I + D AHLG A GI Y
Sbjct: 322 ILGWKFFDHAAHLGGALFGIWY 343
>sp|Q58EK4|PARL_DANRE Presenilins-associated rhomboid-like protein, mitochondrial
OS=Danio rerio GN=parl PE=2 SV=1
Length = 383
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 9/137 (6%)
Query: 276 LVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE-- 333
+V F H + H+ ++ + L TF + G F +Y GG+ S++
Sbjct: 210 MVLSSFSHYSVIHMVVNMYVLWTFSSSIVSLLGREQFLALYLSGGVISTFVSYVFKTATG 269
Query: 334 ---PTVGGTGPVFAIIGAWLIYQFQNK----DLIAKDVSERMFQKAILSTALSFIISNFG 386
P++G +G + ++ A + K L S KA+++ ++ ++ +
Sbjct: 270 RLGPSLGASGSIMTVLAAVCTKIPEAKLGIVLLPVISFSAGNALKALVALDIAGLVLGWR 329
Query: 387 PVDTWAHLGAAFTGIIY 403
D AHLG A G+ Y
Sbjct: 330 FFDHAAHLGGALFGVWY 346
>sp|P34356|ROM2_CAEEL Rhomboid-related protein 2 OS=Caenorhabditis elegans GN=rom-2 PE=3
SV=2
Length = 435
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 107/244 (43%), Gaps = 44/244 (18%)
Query: 191 MGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIS------------ILVSIDVAVF 238
M K KGYR +R AL T + +++ S L+ + +
Sbjct: 81 MSKCKGYR-------LREYLFRAALTVTPKNQRIHVFSELQRYKCVPPPIFLIFLSIVQL 133
Query: 239 LFEIASPIRNSEFGFFSLPLLYGAKINELIL----VGEWWRLVTPMFLHSGLFHVALSCW 294
F + + +SE + S P+ ++ LI+ + E WRL T ++ G+FH+ +
Sbjct: 134 AFYLYYVVDSSEGVWLSGPI---PTMSPLIVSQYHLPELWRLFTYCLINVGIFHIIFNIL 190
Query: 295 ALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTV---GGTGPVFAIIGAWLI 351
L G + + + +++Y +G + G++ S +PTV GG F++I + +
Sbjct: 191 IQLAIGVPL-ELVHRWRIYILYFMGVLFGSILSL--ALDPTVFLCGGAAGSFSLIASHIT 247
Query: 352 YQFQN-KDLIAKDVSERMFQKAILSTALSFIISN----FGP----VDTWAHLGAAFTGII 402
N K++ ++ + R+ I+ AL ++++ F P V + HLG GI+
Sbjct: 248 TIATNFKEM--ENATCRL-PILIVFAALDYVLAVYQRFFAPRIDKVSMYGHLGGLVAGIL 304
Query: 403 YGFL 406
+ F+
Sbjct: 305 FTFI 308
>sp|Q6C3V4|NUF2_YARLI Probable kinetochore protein NUF2 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NUF2 PE=3 SV=1
Length = 452
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 77 SHVGSFSKKASTKEKLRMVRCAAKSSDS-----ECQIRILESYLAKLKDDSIQNSSESSG 131
+H + K + KE L V ++ ++ + +I ES +A+++ D ++ ++S
Sbjct: 319 AHSKAVRKITTQKELLEHVGINSRQAEGRRDVLQQEIEAAESKIARIQQDMSESDRQTSR 378
Query: 132 EIEELHSRSGEINAKTELDSLDAYLGKLNTD----AKFSTDQTTERNLVAAQLSISKSSK 187
+EEL + G ++A+ L + + NT A+ D TER+ AQL +++
Sbjct: 379 RMEELRRQIGTLDAERAL-----VVQQNNTAQKRLAELENDMATERDRYEAQLKMAREEA 433
Query: 188 RGYMGKLKGY 197
+ + Y
Sbjct: 434 EKLQTQFREY 443
>sp|Q076A4|MYH8_CANFA Myosin-8 OS=Canis familiaris GN=MYH8 PE=3 SV=1
Length = 1939
Score = 32.3 bits (72), Expect = 7.1, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 24/158 (15%)
Query: 61 QDVAELPVQWKMSNIT---SHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAK 117
+D+ E +Q + + T H S ++ + L+ V+ + SE ++ I
Sbjct: 1181 RDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEI------- 1233
Query: 118 LKDDSIQNS---SESSGEIEE----LHSRSGEINAKTE-----LDSLDAYLGKLNTDAKF 165
DD N+ S++ G +E+ L + E+ K E ++ L A +L T+A
Sbjct: 1234 --DDLASNAETISKAKGNLEKMCRTLEDQVSELKTKEEEQQRLINDLTAQRARLQTEAGE 1291
Query: 166 STDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNK 203
+ Q E++ + +QLS SK + + +LK E K
Sbjct: 1292 YSRQLDEKDALVSQLSRSKQASTQQIEELKRQLEEETK 1329
>sp|O88779|RHBL1_RAT Rhomboid-related protein 1 (Fragment) OS=Rattus norvegicus
GN=Rhbdl1 PE=2 SV=1
Length = 164
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT-SFLHTPEPTVGGT 339
F+H GL + + L G + +G L+Y G ++G+LT S P VGG+
Sbjct: 1 FMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGSLTVSITDMRAPVVGGS 60
Query: 340 GPVFAIIGAWLIYQFQN 356
G V+A+ A L N
Sbjct: 61 GGVYALCSAHLANVVMN 77
>sp|B6Q656|M28P1_PENMQ Probable zinc metalloprotease PMAA_024220 OS=Penicillium marneffei
(strain ATCC 18224 / CBS 334.59 / QM 7333)
GN=PMAA_024220 PE=3 SV=1
Length = 977
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 224 LYLISILVSIDVAVFLFEIASPIRNS--------EFGFFSLPLLYGAKINELILVGEWWR 275
L++ SI+++ ++LF I+ P+ + GFF P ++G+ ++ +
Sbjct: 398 LFITSIILANQDRMYLFGISVPVDDGFGSVPLRGWRGFFRFPFIFGSTTASVVALAYLMA 457
Query: 276 LVTPMFLHSGLFHV---ALSCWALLT-FGPQVCKSYGPFTFFLIYTL 318
+ PM HS + V +S W + F ++ P IY L
Sbjct: 458 KINPMIAHSSEYAVWSMMISAWVFVAWFLSRIANFARPSALHRIYVL 504
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,728,868
Number of Sequences: 539616
Number of extensions: 6619149
Number of successful extensions: 16552
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 16480
Number of HSP's gapped (non-prelim): 104
length of query: 466
length of database: 191,569,459
effective HSP length: 121
effective length of query: 345
effective length of database: 126,275,923
effective search space: 43565193435
effective search space used: 43565193435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)