Query 012312
Match_columns 466
No_of_seqs 284 out of 1683
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 01:18:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00101 rhomboid-1 protease; 100.0 2.4E-31 5.1E-36 264.1 21.8 195 214-410 43-241 (278)
2 PRK10907 intramembrane serine 99.9 5.1E-27 1.1E-31 233.3 18.1 177 224-409 94-270 (276)
3 KOG2289 Rhomboid family protei 99.9 1.5E-28 3.2E-33 246.2 5.0 161 257-419 103-264 (316)
4 COG0705 Membrane associated se 99.9 6.6E-24 1.4E-28 205.4 14.3 190 223-412 16-214 (228)
5 KOG2290 Rhomboid family protei 99.9 3.9E-22 8.5E-27 203.4 9.5 174 270-459 448-624 (652)
6 PF01694 Rhomboid: Rhomboid fa 99.8 4.3E-22 9.4E-27 178.3 4.2 140 269-410 2-143 (145)
7 KOG2632 Rhomboid family protei 99.6 8.8E-16 1.9E-20 149.2 11.8 172 222-406 13-195 (258)
8 KOG2980 Integral membrane prot 98.9 2.7E-09 5.9E-14 106.0 6.2 179 226-413 117-305 (310)
9 PF04511 DER1: Der1-like famil 98.5 1.4E-06 3E-11 83.2 12.7 173 223-407 1-180 (197)
10 PF08551 DUF1751: Eukaryotic i 98.2 4.2E-07 9.2E-12 77.6 0.7 58 272-329 7-64 (99)
11 KOG0858 Predicted membrane pro 97.9 4E-05 8.6E-10 74.4 8.0 172 220-406 9-184 (239)
12 KOG2890 Predicted membrane pro 97.3 0.00042 9.1E-09 69.4 5.6 143 272-415 66-221 (326)
13 COG5291 Predicted membrane pro 95.3 0.02 4.4E-07 56.0 4.3 80 222-310 18-99 (313)
14 KOG4463 Uncharacterized conser 93.9 0.039 8.4E-07 54.6 2.7 60 269-329 47-106 (323)
15 PF11992 DUF3488: Domain of un 71.9 63 0.0014 33.2 12.5 60 386-460 121-180 (325)
16 TIGR01299 synapt_SV2 synaptic 71.4 2E+02 0.0043 33.2 19.5 38 289-327 212-249 (742)
17 PF03419 Peptidase_U4: Sporula 66.4 37 0.0008 34.3 9.3 71 287-360 11-84 (293)
18 COG0705 Membrane associated se 62.7 3.9 8.5E-05 39.4 1.4 74 269-355 136-209 (228)
19 TIGR01299 synapt_SV2 synaptic 51.0 3E+02 0.0066 31.8 14.2 29 298-326 613-641 (742)
20 TIGR02854 spore_II_GA sigma-E 49.6 1.5E+02 0.0032 30.1 10.3 71 287-360 11-84 (288)
21 PF11833 DUF3353: Protein of u 45.4 2.3E+02 0.005 27.1 10.4 19 393-411 146-164 (194)
22 PRK10263 DNA translocase FtsK; 44.4 1.5E+02 0.0033 36.4 10.5 10 395-404 143-152 (1355)
23 TIGR00834 ae anion exchange pr 42.7 2.2E+02 0.0047 33.8 11.3 64 285-348 375-440 (900)
24 COG2271 UhpC Sugar phosphate p 39.6 4.2E+02 0.0092 28.8 12.1 19 226-244 253-271 (448)
25 COG1575 MenA 1,4-dihydroxy-2-n 38.5 4.6E+02 0.01 27.0 12.0 20 338-357 153-172 (303)
26 PF09527 ATPase_gene1: Putativ 36.9 1.1E+02 0.0024 22.8 5.4 41 287-327 8-49 (55)
27 PRK10255 PTS system N-acetyl g 36.3 66 0.0014 36.5 5.9 63 390-462 95-157 (648)
28 KOG0255 Synaptic vesicle trans 35.6 2.1E+02 0.0046 30.6 9.6 45 286-331 125-169 (521)
29 KOG1172 Na+-independent Cl/HCO 34.2 4.5E+02 0.0098 30.9 11.9 119 284-408 365-490 (876)
30 TIGR00806 rfc RFC reduced fola 32.5 6.8E+02 0.015 27.7 12.6 26 300-325 82-107 (511)
31 PF01032 FecCD: FecCD transpor 26.3 2.8E+02 0.006 28.4 8.0 31 435-465 174-204 (311)
32 PRK10263 DNA translocase FtsK; 26.1 1.4E+03 0.03 28.6 15.6 13 338-350 141-153 (1355)
33 PRK11715 inner membrane protei 25.9 5.8E+02 0.013 27.7 10.6 57 303-359 321-385 (436)
34 PF05537 DUF759: Borrelia burg 25.7 37 0.0008 36.0 1.5 95 104-199 18-120 (431)
35 COG4769 Predicted membrane pro 25.6 5.1E+02 0.011 24.5 8.7 50 306-355 51-101 (181)
36 PF10066 DUF2304: Uncharacteri 25.6 1.9E+02 0.004 25.1 5.7 23 379-401 43-66 (115)
37 PF06123 CreD: Inner membrane 25.2 6.6E+02 0.014 27.2 10.8 57 303-359 315-379 (430)
38 PF11395 DUF2873: Protein of u 24.9 56 0.0012 23.0 1.8 30 434-463 8-37 (43)
39 KOG2884 26S proteasome regulat 24.6 84 0.0018 30.9 3.6 60 88-162 103-164 (259)
40 COG4395 Uncharacterized protei 24.2 1.3E+02 0.0029 30.5 5.1 28 437-464 57-84 (281)
41 TIGR02005 PTS-IIBC-alpha PTS s 24.0 93 0.002 34.4 4.2 64 389-462 135-198 (524)
42 PF10011 DUF2254: Predicted me 23.2 8.7E+02 0.019 25.4 13.9 27 389-415 93-119 (371)
43 TIGR02230 ATPase_gene1 F0F1-AT 23.1 1.9E+02 0.0042 24.8 5.1 42 287-328 50-92 (100)
44 PF07301 DUF1453: Protein of u 22.6 5E+02 0.011 23.9 8.0 30 387-416 54-83 (148)
45 PTZ00207 hypothetical protein; 22.6 1.1E+03 0.024 26.4 15.2 29 301-329 82-110 (591)
46 PRK11056 hypothetical protein; 22.5 4.3E+02 0.0093 23.5 7.2 51 308-362 7-58 (120)
47 TIGR03869 F420-0_ABCperm propo 21.3 9.2E+02 0.02 24.9 10.7 28 438-465 186-213 (325)
48 KOG2533 Permease of the major 20.9 3.7E+02 0.0081 29.5 8.1 16 392-407 179-194 (495)
49 COG1296 AzlC Predicted branche 20.8 8.3E+02 0.018 24.2 10.2 22 389-410 210-231 (238)
50 COG3105 Uncharacterized protei 20.0 98 0.0021 27.9 2.8 22 389-410 7-28 (138)
No 1
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.98 E-value=2.4e-31 Score=264.07 Aligned_cols=195 Identities=26% Similarity=0.325 Sum_probs=150.2
Q ss_pred HhhhccccccHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHH
Q 012312 214 ALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSC 293 (466)
Q Consensus 214 ~~~~~~~~~~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nm 293 (466)
.++..+....+.+|..++++++++|++...................+|++.++.+.++||||++|++|+|.|+.|+++||
T Consensus 43 ler~Fp~f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm 122 (278)
T PTZ00101 43 LNLIFPHFTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNV 122 (278)
T ss_pred HHHHcCCccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHH
Confidence 55678888999999999999999999987643211100111235678888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcccCC-CcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 012312 294 WALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA 372 (466)
Q Consensus 294 l~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p-~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~ 372 (466)
++++.+|..+|+.+|++|++.+|+++|++|++++.++.+ ..++||||++||++|+++......|...... .+.....
T Consensus 123 ~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa~~~~lil~w~~~~~~--~~~~~~~ 200 (278)
T PTZ00101 123 FFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRHR--ERVVFNI 200 (278)
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHH
Confidence 999999999999999999999999999999999988765 4689999999999999987665555443221 1111111
Q ss_pred HHHHHHHH--Hh-hcCCcHHHHHHHHHHHHHHHHHHHhccc
Q 012312 373 ILSTALSF--II-SNFGPVDTWAHLGAAFTGIIYGFLTCPL 410 (466)
Q Consensus 373 il~~~l~~--~l-~~~~~i~~~aHLgG~l~G~l~g~l~~~~ 410 (466)
+++..+.+ .. ...+++|++||+||+++|+++|+++.++
T Consensus 201 i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~ 241 (278)
T PTZ00101 201 IFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQ 241 (278)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 11111111 11 2247799999999999999999998664
No 2
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.95 E-value=5.1e-27 Score=233.34 Aligned_cols=177 Identities=18% Similarity=0.135 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHHHH
Q 012312 224 LYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQV 303 (466)
Q Consensus 224 p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~l 303 (466)
.++|..++++|++||++........ ...+..........+||||++|++|+|.|+.|+++||+++|.+|..+
T Consensus 94 ~p~T~~li~i~i~vf~l~~~~~~~~--------~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~i 165 (276)
T PRK10907 94 GPLTLGVMIACVVVFILMQILGDQT--------VMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAV 165 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHHhccHH--------HHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3588899999999999876643211 01111111122457899999999999999999999999999999999
Q ss_pred HHhhchhHHHHHHHHHHHHhhhhhcccCCCcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 012312 304 CKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIS 383 (466)
Q Consensus 304 E~~~G~~r~l~lyl~sgi~G~l~s~l~~p~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l~ 383 (466)
|+.+|+++++.+|++++++|+++++++.+...+|+||+|||++|+.......... .....+..+....++.+.+.+.-.
T Consensus 166 E~~~G~~~~l~l~l~s~i~~~~~~~~~~~~~~gGaSGvVygL~g~~~~~~~~~p~-~~~~lp~~~~~f~llwl~~g~~~~ 244 (276)
T PRK10907 166 EKRLGSGKLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMGYVWLRGERDPQ-SGIYLPRGLIAFALLWLVAGYFDL 244 (276)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999988887777899999999999986554322221 111122222222222222333222
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHhcc
Q 012312 384 NFGPVDTWAHLGAAFTGIIYGFLTCP 409 (466)
Q Consensus 384 ~~~~i~~~aHLgG~l~G~l~g~l~~~ 409 (466)
...++++.||++|+++|+++|++..+
T Consensus 245 ~g~~Ian~AHlgGli~Gll~g~~~~~ 270 (276)
T PRK10907 245 FGMSIANAAHVAGLAVGLAMAFWDTR 270 (276)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHhhh
Confidence 34679999999999999999998754
No 3
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.95 E-value=1.5e-28 Score=246.25 Aligned_cols=161 Identities=30% Similarity=0.499 Sum_probs=140.4
Q ss_pred hhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcccCCC-cc
Q 012312 257 PLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE-PT 335 (466)
Q Consensus 257 p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~-~~ 335 (466)
....+......++.+|+||++||+|+|+|+.||++||+.++++|..+|..+|.+|+.++|++||++|++++.++++. .+
T Consensus 103 ~~~~~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~s 182 (316)
T KOG2289|consen 103 EKMGGLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSIS 182 (316)
T ss_pred cccCCceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCce
Confidence 34556667677899999999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred cCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhccccccCC
Q 012312 336 VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415 (466)
Q Consensus 336 vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l~~~~~~~~~ 415 (466)
|||||++|||+||++.....||..+..... ....+++++.++..++..+++++++|+||+++|..+|++..+..++..
T Consensus 183 VGASggvfaLlgA~Ls~l~~Nw~~m~~~~~--~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~ 260 (316)
T KOG2289|consen 183 VGASGGVFALLGAHLSNLLTNWTIMKNKFA--ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGG 260 (316)
T ss_pred ecccHHHHHHHHHHHHHHHhhHHHhcchHH--HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeE
Confidence 999999999999999999999998764332 334455555667777888999999999999999999999998887776
Q ss_pred cccc
Q 012312 416 ASSR 419 (466)
Q Consensus 416 ~~~~ 419 (466)
...+
T Consensus 261 ~~~~ 264 (316)
T KOG2289|consen 261 ITIG 264 (316)
T ss_pred Eecc
Confidence 5443
No 4
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.91 E-value=6.6e-24 Score=205.45 Aligned_cols=190 Identities=24% Similarity=0.431 Sum_probs=140.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCccccc--chhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHH
Q 012312 223 NLYLISILVSIDVAVFLFEIASPIRNSEFGF--FSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFG 300 (466)
Q Consensus 223 ~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~--~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG 300 (466)
.++++..++++|+++|+++............ ......++..........||||++|++|+|.|+.|+++||+.+|.+|
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg 95 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG 95 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 5778899999999999998765432111000 00000111111111111189999999999999999999999999999
Q ss_pred HHHHHhhchhHHHHHHHHHHHHhhhhhcccCCC---cccCChhHHHHHHHHHHHHHhccchhhhhh-hhHHHHHHHHHHH
Q 012312 301 PQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE---PTVGGTGPVFAIIGAWLIYQFQNKDLIAKD-VSERMFQKAILST 376 (466)
Q Consensus 301 ~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~---~~vGaSGaVfGLlga~~~~~~~~~~~l~~~-~~~~~~~~~il~~ 376 (466)
..+|+.+|+.+|+.+|+++|+++++++..+.+. +.+||||++||++++++...+..+...... .+..+.....+..
T Consensus 96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 175 (228)
T COG0705 96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWL 175 (228)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHHHH
Confidence 999999999999999999999999998888763 599999999999999999988766654433 3344333333444
Q ss_pred HHHHHhhcCC---cHHHHHHHHHHHHHHHHHHHhccccc
Q 012312 377 ALSFIISNFG---PVDTWAHLGAAFTGIIYGFLTCPLVQ 412 (466)
Q Consensus 377 ~l~~~l~~~~---~i~~~aHLgG~l~G~l~g~l~~~~~~ 412 (466)
...++..... ++++.||++|+++|++++..+.++.+
T Consensus 176 ~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~ 214 (228)
T COG0705 176 LYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLR 214 (228)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4444443333 69999999999999999999877544
No 5
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.86 E-value=3.9e-22 Score=203.37 Aligned_cols=174 Identities=28% Similarity=0.446 Sum_probs=141.4
Q ss_pred cCcceeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcccCCC-cccCChhHHHHHHHH
Q 012312 270 VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE-PTVGGTGPVFAIIGA 348 (466)
Q Consensus 270 ~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~-~~vGaSGaVfGLlga 348 (466)
..|+|||+||.|+|+|+.|++..+.+++.+.+.+|+..|+.|+.++|+++|+.||+++.++.|. +.||.||+-||++++
T Consensus 448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~Gila~ 527 (652)
T KOG2290|consen 448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFGILAC 527 (652)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccccchHHH
Confidence 4599999999999999999999999999999999999999999999999999999999999984 799999999999999
Q ss_pred HHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhccccccCCccccCccchhhHH
Q 012312 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITL 428 (466)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l~~~~~~~~~~~~~~~~~~~~~~ 428 (466)
..+...++|..+..++. .+..++.. .+.+..+..|+||||||+.|+++|++..+++.|++.+++...
T Consensus 528 l~vEl~qs~~il~~~w~--a~~~Lia~-~L~L~iGliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~---------- 594 (652)
T KOG2290|consen 528 LFVELFQSWQILERPWR--AFFHLIAT-LLVLCIGLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDL---------- 594 (652)
T ss_pred HHHHHHhhhHhhhhHHH--HHHHHHHH-HHHHHhccccchhhHHHHHHHHHHHHHHHHhhccccccchhh----------
Confidence 99999999998876433 33222222 222233778999999999999999999999999998877432
Q ss_pred hhhccccchhHHHHHHHHHHHHH--HHHhhcCC
Q 012312 429 IRQYANPCKSLIVFTIFVIILGS--FIFVFEPP 459 (466)
Q Consensus 429 ~r~~~~~~~~ll~f~i~vivl~~--~lf~~~pp 459 (466)
|...+.+++..++|.+++.. ++|+..|.
T Consensus 595 ---yrKr~~ilIs~ivf~~Lla~Lvv~fy~~~i 624 (652)
T KOG2290|consen 595 ---YRKRFYILISQIVFSGLLAILVVVFYNYPI 624 (652)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHheeeccc
Confidence 12235566666666666655 45555553
No 6
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.85 E-value=4.3e-22 Score=178.27 Aligned_cols=140 Identities=31% Similarity=0.614 Sum_probs=106.6
Q ss_pred hcCcceeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcccCCC--cccCChhHHHHHH
Q 012312 269 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE--PTVGGTGPVFAII 346 (466)
Q Consensus 269 ~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~--~~vGaSGaVfGLl 346 (466)
+++||||++|++|+|.|+.|+++|++.++.+|..+|+.+|++++..+|++++++++++..++.+. ..+|+||+++|++
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~ 81 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL 81 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence 57899999999999999999999999999999999999999999999999999999999887664 5999999999999
Q ss_pred HHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhccc
Q 012312 347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPL 410 (466)
Q Consensus 347 ga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l~~~~ 410 (466)
++.+...+..+........ ..........+.+.....+++++.+|++|+++|++++..+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~ 143 (145)
T PF01694_consen 82 GAFLFLYPQNKKRLRFIYL--ALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRR 143 (145)
T ss_dssp HHHHHHHHCCCCCS---HC--CCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH-
T ss_pred HHHHHHHhhccchhhcchH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999998877554331000 0000111122233334468899999999999999999998765
No 7
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.65 E-value=8.8e-16 Score=149.20 Aligned_cols=172 Identities=19% Similarity=0.240 Sum_probs=129.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHH
Q 012312 222 SNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP 301 (466)
Q Consensus 222 ~~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~ 301 (466)
..|.+|..++.++.++|++....... -.+ .+....+.+.|.||++||+++|.+..|+++||+++|.+|.
T Consensus 13 ~~p~~ts~~~~~~~~i~lv~~~~~i~----------~~~-~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~ 81 (258)
T KOG2632|consen 13 KIPLLTSIVVVLAILIYLVSFFPGIV----------EVL-GLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGS 81 (258)
T ss_pred cchHHHHHHHHHHHHHHHHhccchhh----------hHh-cCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchh
Confidence 45778888899999999886543321 011 1223556788999999999999999999999999999999
Q ss_pred HHHHhhc-hhHHHHHHHHHHHHhhhhhcccC------C----CcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHH
Q 012312 302 QVCKSYG-PFTFFLIYTLGGISGNLTSFLHT------P----EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ 370 (466)
Q Consensus 302 ~lE~~~G-~~r~l~lyl~sgi~G~l~s~l~~------p----~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~ 370 (466)
.+|+.+| +.+++....+.++..+++..+.. + ...+|.||..||+++......+.+..........+.+.
T Consensus 82 ~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l 161 (258)
T KOG2632|consen 82 QFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVL 161 (258)
T ss_pred HHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHHH
Confidence 9999999 88888888888888887765443 2 34799999999999998888777665544433233333
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH
Q 012312 371 KAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406 (466)
Q Consensus 371 ~~il~~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l 406 (466)
..++.++...+ ..++.+.++|++|+++|+.+++-
T Consensus 162 ~Pw~lLi~~~~--lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 162 APWALLIATQI--LVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred HHHHHHHHHHH--HccCchHHHHHHHHHHHHHHHHH
Confidence 33333322212 24889999999999999999984
No 8
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=98.87 E-value=2.7e-09 Score=105.96 Aligned_cols=179 Identities=20% Similarity=0.270 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHH-HHH
Q 012312 226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP-QVC 304 (466)
Q Consensus 226 vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~-~lE 304 (466)
+...++++|+++|..+.....+.... +. ...+..-..+ -|.+++|.|.|.+.+|+..||+.++.+.. .+-
T Consensus 117 ~v~~ll~~n~~vf~lWrv~~~~~~~~-----~~---mls~~~~~t~-~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~ 187 (310)
T KOG2980|consen 117 VVFGLLIANAFVFTLWRVPQKQFTMI-----PW---MLSRNAYKTG-CWKIILSTFSHYSALHLGPNMLVLKSYLAGALK 187 (310)
T ss_pred chhHHHHHHHHHHHHHHhcchhhhhh-----hH---Hhhccccccc-ceeEEeehhcchhHhhhcHHHHHHHHHhccccc
Confidence 77899999999998876543221110 00 0111111233 45599999999999999999999998888 788
Q ss_pred HhhchhHHHHHHHHHHHHhhhhhccc-CC----CcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHH----HHHHHH
Q 012312 305 KSYGPFTFFLIYTLGGISGNLTSFLH-TP----EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMF----QKAILS 375 (466)
Q Consensus 305 ~~~G~~r~l~lyl~sgi~G~l~s~l~-~p----~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~----~~~il~ 375 (466)
..+|...+..+|+.++..|......- .+ .+.+||||+++++++..+..+|.....+....+.... ..++..
T Consensus 188 ~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~~i~~ 267 (310)
T KOG2980|consen 188 GSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFKAIAA 267 (310)
T ss_pred CCcchhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHHHHHH
Confidence 88999999999997676666654433 11 4689999999999999999988766654432222211 112222
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhcccccc
Q 012312 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL 413 (466)
Q Consensus 376 ~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l~~~~~~~ 413 (466)
..+..+......-|+.||++|.+.|..++.+..+++..
T Consensus 268 ~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri~k 305 (310)
T KOG2980|consen 268 YDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARIRK 305 (310)
T ss_pred hhhcceeeccccchhHhhhcchHHHHHHHHHHHHHHHc
Confidence 22222222335577889999999999999988776543
No 9
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=98.51 E-value=1.4e-06 Score=83.17 Aligned_cols=173 Identities=15% Similarity=0.156 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCH-HHHHHHHHHHHHHHH
Q 012312 223 NLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGL-FHVALSCWALLTFGP 301 (466)
Q Consensus 223 ~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~-~HLl~Nml~Ll~fG~ 301 (466)
.|++|..+++..+++-++....-.. |...--.++..+.++|+||++|+.|.-++. .+.++|++.++..+.
T Consensus 1 iPpVTR~~~~~~~~~s~l~~~~~~~---------~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~ 71 (197)
T PF04511_consen 1 IPPVTRYWLISTVALSLLVSFGIIS---------PYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSS 71 (197)
T ss_pred CChhHHHHHHHHHHHHHHHHCCCCC---------HHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhh
Confidence 3788988888888877765432111 222222233345679999999999986554 799999999999999
Q ss_pred HHHHh-hch--hHHHHHHHHHHHHhhhhhcccCCC---cccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHH
Q 012312 302 QVCKS-YGP--FTFFLIYTLGGISGNLTSFLHTPE---PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 375 (466)
Q Consensus 302 ~lE~~-~G~--~r~l~lyl~sgi~G~l~s~l~~p~---~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~ 375 (466)
.+|+. ++. ..++...+.+++.-.+++.+.... ...-..+-.+.++=.++-..+.......+.++.+....-++.
T Consensus 72 ~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~ 151 (197)
T PF04511_consen 72 SLEEGHFQGRSADYLWFLLFGASLILILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVL 151 (197)
T ss_pred HhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHH
Confidence 99998 332 467777666666655555543321 011112233333333444434333333332344444445555
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Q 012312 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLT 407 (466)
Q Consensus 376 ~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l~ 407 (466)
+++.++.+. .+...++-|+++|-++-++-
T Consensus 152 ~~~~~l~~~---~~~~~~l~Gi~~Ghly~fl~ 180 (197)
T PF04511_consen 152 LAFSLLFGG---SSPIPDLLGILVGHLYYFLK 180 (197)
T ss_pred HHHHHHhCC---CcHHHHHHHHHHHHHHHHHH
Confidence 566655543 24568999999999998774
No 10
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=98.18 E-value=4.2e-07 Score=77.55 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=54.5
Q ss_pred cceeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcc
Q 012312 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL 329 (466)
Q Consensus 272 q~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l 329 (466)
.+|+++|+.|++.++..+++|.+.++..|+.+|+.||++.++..+++.+++.|+...+
T Consensus 7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~ 64 (99)
T PF08551_consen 7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFL 64 (99)
T ss_pred ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHH
Confidence 7899999999999999999999999999999999999999999999999998887544
No 11
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=97.88 E-value=4e-05 Score=74.41 Aligned_cols=172 Identities=15% Similarity=0.148 Sum_probs=100.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCC-HHHHHHHHHHHHH
Q 012312 220 ETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG-LFHVALSCWALLT 298 (466)
Q Consensus 220 ~~~~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g-~~HLl~Nml~Ll~ 298 (466)
....|++|.....+|++.=++....-.. |...--.++-.+++.|+||++|+.+.-.. -+|.++||+.++-
T Consensus 9 ~~~iPpVTR~~~~~~v~tt~~~~l~lIs---------P~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~Flyr 79 (239)
T KOG0858|consen 9 YLQIPPVTRYYTTACVVTTLLVRLDLIS---------PFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYR 79 (239)
T ss_pred HhcCChHHHHHHHHHHHHHHHHhhcccC---------chheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHH
Confidence 3577899999999988887765432111 21111122234588999999999988865 6999999999999
Q ss_pred HHHHHHHhh---chhHHHHHHHHHHHHhhhhhcccCCCcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHH
Q 012312 299 FGPQVCKSY---GPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 375 (466)
Q Consensus 299 fG~~lE~~~---G~~r~l~lyl~sgi~G~l~s~l~~p~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~ 375 (466)
.++.||+-. -+..|+.+.+++++.-.+.+.... ...+| ++-++.+.=.|+-..+.......+.+..+....-+++
T Consensus 80 Y~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~~~~-~~fLg-~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvl 157 (239)
T KOG0858|consen 80 YSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGLFVY-IVFLG-QSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVL 157 (239)
T ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHhhCCCceEEEEEEecCccccchHHH
Confidence 999999853 236788888888877665554211 01111 1111111111111111111111122233334445556
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH
Q 012312 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406 (466)
Q Consensus 376 ~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l 406 (466)
.++.++.+. .+ ..-+-|+++|-++-++
T Consensus 158 l~fs~l~g~---~~-~~dllGi~~GHiy~fl 184 (239)
T KOG0858|consen 158 LGFSFLFGG---SI-LVDLLGIIVGHIYYFL 184 (239)
T ss_pred HHHHHHhCC---ch-HHHHHhhhhheeEEEE
Confidence 666666532 23 7778888888776544
No 12
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=97.25 E-value=0.00042 Score=69.41 Aligned_cols=143 Identities=20% Similarity=0.210 Sum_probs=94.5
Q ss_pred cceeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhc--------ccCC-----CcccCC
Q 012312 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF--------LHTP-----EPTVGG 338 (466)
Q Consensus 272 q~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~--------l~~p-----~~~vGa 338 (466)
..|+++|+.|+-.+++..++|++.+.+-|..+|+.||+..++..|.+.-..-+++.. +... .+..|.
T Consensus 66 ~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~ 145 (326)
T KOG2890|consen 66 FPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGT 145 (326)
T ss_pred hhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccc
Confidence 689999999999999999999999999999999999999999888765444443321 1111 247899
Q ss_pred hhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhccccccCC
Q 012312 339 TGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415 (466)
Q Consensus 339 SGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l~~~~~~~~~ 415 (466)
.|.+.|++.++=-.++..-..............-++.+.+.+++.. -.....+.+..+..|...+|.+++..+...
T Consensus 146 ~gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i-~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~ 221 (326)
T KOG2890|consen 146 TGILAGILVAWKQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSI-ITFLVFASLPSITFGVLVSWTYLRFYQRHP 221 (326)
T ss_pred hHHHHHHHHHHHHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHH-HHHHHhhhhHHHHHhhhhhhhhheecccCC
Confidence 9999999998877766542211110000000000111111111111 123466778888899999999988777554
No 13
>COG5291 Predicted membrane protein [Function unknown]
Probab=95.30 E-value=0.02 Score=56.02 Aligned_cols=80 Identities=10% Similarity=0.125 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCC-HHHHHHHHHHHHHHH
Q 012312 222 SNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG-LFHVALSCWALLTFG 300 (466)
Q Consensus 222 ~~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g-~~HLl~Nml~Ll~fG 300 (466)
..|++|..+..+..++-++....-.. |...-..++-.+++-||||++|+..+-++ -+..++|+++++--.
T Consensus 18 ~IPPITRy~~ll~~a~til~~~~lvs---------Pwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS 88 (313)
T COG5291 18 RIPPITRYMTLLISAVTILVYVDLVS---------PWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYS 88 (313)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhcC---------ccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence 36777776666666555544332111 11001112233567799999997766554 588999999999999
Q ss_pred HHHHH-hhchh
Q 012312 301 PQVCK-SYGPF 310 (466)
Q Consensus 301 ~~lE~-~~G~~ 310 (466)
+.||+ .+|+.
T Consensus 89 ~~LE~g~f~~~ 99 (313)
T COG5291 89 RMLEEGCFNTS 99 (313)
T ss_pred HHHhccccCcc
Confidence 99998 45655
No 14
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=0.039 Score=54.60 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=51.3
Q ss_pred hcCcceeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcc
Q 012312 269 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL 329 (466)
Q Consensus 269 ~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l 329 (466)
...|+||++.+-|.-.+--.+.+-++.++. -+.+||.+|+.||..+.+.+++.+.++.+.
T Consensus 47 ~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~-fR~~ERlLGShky~~fiv~s~~~~~l~~~i 106 (323)
T KOG4463|consen 47 KYFQYWRLLMSQFAFSNTPELMFGLYILYY-FRVFERLLGSHKYSVFIVFSGTVSLLLEVI 106 (323)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHHHHHHhccccceeehhHHHHHHHHHHHH
Confidence 447999999999999999888888777666 568999999999999999999888876544
No 15
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=71.88 E-value=63 Score=33.16 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhccccccCCccccCccchhhHHhhhccccchhHHHHHHHHHHHHHHHHhhcCCc
Q 012312 386 GPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPL 460 (466)
Q Consensus 386 ~~i~~~aHLgG~l~G~l~g~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ll~f~i~vivl~~~lf~~~ppl 460 (466)
..+.....+...+...+++++...... .. +......+....+++..+.++.++|++-|=+
T Consensus 121 qs~~~~l~~ll~~~~~~~~L~~l~~~~---~~------------~~~~~~~~~~~~l~l~alpl~~vlFl~fPR~ 180 (325)
T PF11992_consen 121 QSLLFALYLLLFLVLLLAALVLLHQPD---SR------------RSLRQLLRRALKLLLQALPLALVLFLLFPRL 180 (325)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCcc---cc------------chHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345566677777777777666542110 00 1112234455556666667777888877754
No 16
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=71.45 E-value=2e+02 Score=33.22 Aligned_cols=38 Identities=13% Similarity=-0.059 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhh
Q 012312 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327 (466)
Q Consensus 289 Ll~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s 327 (466)
.+..++..++.|. +-..+|+++.+++.++...++.++.
T Consensus 212 ~lG~iiG~li~G~-LsDR~GRR~~lii~lil~~i~~ll~ 249 (742)
T TIGR01299 212 YLGMMVGAFFWGG-LADKLGRKQCLLICLSVNGFFAFFS 249 (742)
T ss_pred HHHHHHHHHHHHH-HHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 4555555566664 5556888888776655444444443
No 17
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=66.37 E-value=37 Score=34.27 Aligned_cols=71 Identities=7% Similarity=0.075 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcccCCCcc-c--CChhHHHHHHHHHHHHHhccchhh
Q 012312 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPT-V--GGTGPVFAIIGAWLIYQFQNKDLI 360 (466)
Q Consensus 287 ~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~~~-v--GaSGaVfGLlga~~~~~~~~~~~l 360 (466)
..+++|.+.|+..+..+-+....+|.++--++|++.+-+. +.|... . -..-.+++++..++++.+..++.+
T Consensus 11 ~N~~md~~lL~~t~~~~~~~~~~~Rll~~A~~Gal~~~~~---~~p~~~~~~~~~~k~l~s~lmv~iaf~~~~~~~~ 84 (293)
T PF03419_consen 11 VNFLMDYFLLWLTARLLKRRASRWRLLLGAAIGALYSLLI---FFPPLSFLYSILFKLLISVLMVLIAFGPKRWRQF 84 (293)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 4678999999999999999998888866555544433222 223211 1 112245555555666655555543
No 18
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=62.69 E-value=3.9 Score=39.39 Aligned_cols=74 Identities=20% Similarity=0.113 Sum_probs=55.0
Q ss_pred hcCcceeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcccCCCcccCChhHHHHHHHH
Q 012312 269 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 348 (466)
Q Consensus 269 ~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~~~vGaSGaVfGLlga 348 (466)
..|++|+++++.++|....|...+... ..+...+++..++..+++.......+.|+.++-+.|+++.
T Consensus 136 ASG~i~gllga~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G 202 (228)
T COG0705 136 ASGAIFGLLGAYFLLFPFARILLLFLS-------------LPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGG 202 (228)
T ss_pred hhHHHHHHHHHHHHHccccchhhhhcc-------------CchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 456777888888887777776666554 5566778888888888887777666788899999999877
Q ss_pred HHHHHhc
Q 012312 349 WLIYQFQ 355 (466)
Q Consensus 349 ~~~~~~~ 355 (466)
.+.....
T Consensus 203 ~l~~~~~ 209 (228)
T COG0705 203 LLLAALL 209 (228)
T ss_pred HHHHHHH
Confidence 6665443
No 19
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=50.98 E-value=3e+02 Score=31.76 Aligned_cols=29 Identities=3% Similarity=-0.048 Sum_probs=17.5
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHhhhh
Q 012312 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLT 326 (466)
Q Consensus 298 ~fG~~lE~~~G~~r~l~lyl~sgi~G~l~ 326 (466)
+++..+-..+|+++.+.+.++.+.++.++
T Consensus 613 il~g~L~Dr~GRr~~l~~~~~lsai~~ll 641 (742)
T TIGR01299 613 IVSALLMDKIGRLRMLAGSMVLSCISCFF 641 (742)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34445556789888877665554444443
No 20
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=49.64 E-value=1.5e+02 Score=30.12 Aligned_cols=71 Identities=7% Similarity=0.161 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcccCCCcccCCh---hHHHHHHHHHHHHHhccchhh
Q 012312 287 FHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT---GPVFAIIGAWLIYQFQNKDLI 360 (466)
Q Consensus 287 ~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~~~vGaS---GaVfGLlga~~~~~~~~~~~l 360 (466)
..+++|.+.|+..+..+-+....+|.++--++|++..-+. +.|....=.+ =.+++++..++++.+..++.+
T Consensus 11 ~Nf~~d~~LL~~t~~~lk~~~~~~Rll~ga~iGa~~~~~~---~~p~~~~~~~~~~k~~~s~lmv~iafg~~~~~~f 84 (288)
T TIGR02854 11 ENFIIDYFLLYLTARTLKDKVSQWRLLLAALIGSLYVLFM---FTPKASFFTSPIAKLLYSFLIIFIAFGPKSLRFF 84 (288)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 5678999999999999999998888866555544433222 2332211111 123444555555555554443
No 21
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=45.40 E-value=2.3e+02 Score=27.12 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 012312 393 HLGAAFTGIIYGFLTCPLV 411 (466)
Q Consensus 393 HLgG~l~G~l~g~l~~~~~ 411 (466)
-++|+++|.++|-++...+
T Consensus 146 ~~~~L~~G~~lGs~l~~~l 164 (194)
T PF11833_consen 146 TLGGLVVGLILGSLLASWL 164 (194)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4556666666666554433
No 22
>PRK10263 DNA translocase FtsK; Provisional
Probab=44.38 E-value=1.5e+02 Score=36.39 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 012312 395 GAAFTGIIYG 404 (466)
Q Consensus 395 gG~l~G~l~g 404 (466)
||++++++..
T Consensus 143 GGIIG~lLs~ 152 (1355)
T PRK10263 143 GGVIGSLLST 152 (1355)
T ss_pred cchHHHHHHH
Confidence 4444444433
No 23
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=42.73 E-value=2.2e+02 Score=33.76 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcccCCC--cccCChhHHHHHHHH
Q 012312 285 GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE--PTVGGTGPVFAIIGA 348 (466)
Q Consensus 285 g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~--~~vGaSGaVfGLlga 348 (466)
-++=.+.|+..-..||..+++.-+..-=..=.++|..+++++..++..+ ..+|.+|.+.-+..+
T Consensus 375 ~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ 440 (900)
T TIGR00834 375 VIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEA 440 (900)
T ss_pred HHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHH
Confidence 4556778888889999998876544333333344444444444555544 468999976655543
No 24
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=39.57 E-value=4.2e+02 Score=28.76 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 012312 226 LISILVSIDVAVFLFEIAS 244 (466)
Q Consensus 226 vt~~Li~inv~VFl~~~~~ 244 (466)
.+..+++.|+.||++....
T Consensus 253 ~iW~la~a~vfvYivR~gi 271 (448)
T COG2271 253 LIWLLALANVFVYVVRYGI 271 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5568999999999987643
No 25
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=38.47 E-value=4.6e+02 Score=27.00 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=15.4
Q ss_pred ChhHHHHHHHHHHHHHhccc
Q 012312 338 GTGPVFAIIGAWLIYQFQNK 357 (466)
Q Consensus 338 aSGaVfGLlga~~~~~~~~~ 357 (466)
.+|..||.++....++.+..
T Consensus 153 ~~~vffG~l~v~g~~yiqt~ 172 (303)
T COG1575 153 FVGVFFGPLIVLGAYYIQTG 172 (303)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 57888998888888876633
No 26
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=36.90 E-value=1.1e+02 Score=22.75 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHhhhhh
Q 012312 287 FHVALSCWALLTFGPQVCKSYGP-FTFFLIYTLGGISGNLTS 327 (466)
Q Consensus 287 ~HLl~Nml~Ll~fG~~lE~~~G~-~r~l~lyl~sgi~G~l~s 327 (466)
..++.+++.-..+|..+++.+|+ ..+..+.++-|+++++.+
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~ 49 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 34667777778999999999999 566666667677766544
No 27
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=36.35 E-value=66 Score=36.48 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCccchhhHHhhhccccchhHHHHHHHHHHHHHHHHhhcCCccc
Q 012312 390 TWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDT 462 (466)
Q Consensus 390 ~~aHLgG~l~G~l~g~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ll~f~i~vivl~~~lf~~~ppl~~ 462 (466)
+.+-+||+++|++.++++.+.-..+-.. - ..-+....-..++-.+..++++.++.+++|+.+.
T Consensus 95 ~~gvfgGIi~G~i~a~l~nkf~~~klP~-------~---l~fF~G~rfVpii~~~~~~~~g~i~~~iWP~v~~ 157 (648)
T PRK10255 95 NMGVLAGIITGLVGGAAYNRWSDIKLPD-------F---LSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQH 157 (648)
T ss_pred chhhhhhhHHHHHHHHHHHHhccccCCc-------e---eeecCCcchhHhHHHHHHHHHHHHHHHhHHHHHH
Confidence 4566999999999999886643321111 0 1112222223333344456777788899998763
No 28
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=35.62 E-value=2.1e+02 Score=30.57 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcccC
Q 012312 286 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331 (466)
Q Consensus 286 ~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~ 331 (466)
..+++.-++.=+++|..-++ +|++..+.+-++..+++++.+.+..
T Consensus 125 s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~ 169 (521)
T KOG0255|consen 125 SLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP 169 (521)
T ss_pred HHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566666666777877777 9999988888877777776655443
No 29
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=34.22 E-value=4.5e+02 Score=30.92 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHhhhhhcccCCC--cccCChhHHHHHHHHHHHHHh-ccchh
Q 012312 284 SGLFHVALSCWALLTFGPQVCKSY-GPFTFFLIYTLGGISGNLTSFLHTPE--PTVGGTGPVFAIIGAWLIYQF-QNKDL 359 (466)
Q Consensus 284 ~g~~HLl~Nml~Ll~fG~~lE~~~-G~~r~l~lyl~sgi~G~l~s~l~~p~--~~vGaSGaVfGLlga~~~~~~-~~~~~ 359 (466)
+-+.=.+.++.....||..+++.- |.....-. ++|..+++++..++..+ ..+|.+|.+.=..-++.-+.- ..+.+
T Consensus 365 ~~lfiYfa~l~P~ItFG~ll~~~Tdg~~~v~E~-L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~dy 443 (876)
T KOG1172|consen 365 ATLFIYFACLLPAITFGGLLGEATDGLIGVVET-LLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGLDY 443 (876)
T ss_pred HHHHHHHHhhhhHhhHHHHhhhhccchHHHHHH-HHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCCch
Confidence 344556677778889999888764 33333333 44444445555555544 468888876544433322221 12222
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhc---CCcHHHHHHHHHHHHHHHHHHHhc
Q 012312 360 IAKDVSERMFQKAILSTALSFIISN---FGPVDTWAHLGAAFTGIIYGFLTC 408 (466)
Q Consensus 360 l~~~~~~~~~~~~il~~~l~~~l~~---~~~i~~~aHLgG~l~G~l~g~l~~ 408 (466)
+.. +.+..+|..+ +.+++.. ..-+.++.-..+=++|++++++|.
T Consensus 444 l~~----r~wVglW~~~-l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi 490 (876)
T KOG1172|consen 444 LAF----RAWVGLWTAF-LLILLAATNASSLVKYITRFTEEIFGLLISLIFI 490 (876)
T ss_pred hhH----HHHHHHHHHH-HHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 222 1111111111 1111111 122556667777777777777664
No 30
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=32.53 E-value=6.8e+02 Score=27.74 Aligned_cols=26 Identities=8% Similarity=-0.138 Sum_probs=15.7
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHhhh
Q 012312 300 GPQVCKSYGPFTFFLIYTLGGISGNL 325 (466)
Q Consensus 300 G~~lE~~~G~~r~l~lyl~sgi~G~l 325 (466)
+..+-.++|.++.+.+-+++..+..+
T Consensus 82 ~GlLaDrlG~K~vL~l~~l~Wsl~t~ 107 (511)
T TIGR00806 82 VFLLTDYLRYKPVLVLQALSFVCVWL 107 (511)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 44566778888876655544444333
No 31
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=26.29 E-value=2.8e+02 Score=28.38 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=21.2
Q ss_pred cchhHHHHHHHHHHHHHHHHhhcCCccccCC
Q 012312 435 PCKSLIVFTIFVIILGSFIFVFEPPLDTLAL 465 (466)
Q Consensus 435 ~~~~ll~f~i~vivl~~~lf~~~ppl~~~~~ 465 (466)
.+..+......+++...++++..+++|.+.+
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~~L~~l~l 204 (311)
T PF01032_consen 174 SWEQLYILLPLLLIGLILLLLLSRKLDILSL 204 (311)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCTCCHHHHHCT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 3445555566666666688888998887764
No 32
>PRK10263 DNA translocase FtsK; Provisional
Probab=26.05 E-value=1.4e+03 Score=28.62 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=7.1
Q ss_pred ChhHHHHHHHHHH
Q 012312 338 GTGPVFAIIGAWL 350 (466)
Q Consensus 338 aSGaVfGLlga~~ 350 (466)
.+|++.|.+.+.+
T Consensus 141 ~gGGIIG~lLs~l 153 (1355)
T PRK10263 141 ASGGVIGSLLSTT 153 (1355)
T ss_pred cccchHHHHHHHH
Confidence 3566666654433
No 33
>PRK11715 inner membrane protein; Provisional
Probab=25.93 E-value=5.8e+02 Score=27.65 Aligned_cols=57 Identities=14% Similarity=0.006 Sum_probs=35.9
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhhhcccCC-Cccc-------CChhHHHHHHHHHHHHHhccchh
Q 012312 303 VCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTV-------GGTGPVFAIIGAWLIYQFQNKDL 359 (466)
Q Consensus 303 lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p-~~~v-------GaSGaVfGLlga~~~~~~~~~~~ 359 (466)
+|..-+..-=.+=|++.|+.-.++..++.. .-++ =||+++.++++.++.....+|+.
T Consensus 321 fE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k~ 385 (436)
T PRK11715 321 FELLKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWKR 385 (436)
T ss_pred HHHhcCceecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 454444444456677777777777655432 2233 35678888888888887776653
No 34
>PF05537 DUF759: Borrelia burgdorferi protein of unknown function (DUF759); InterPro: IPR008478 This entry consists of several uncharacterised proteins from Borrelia species including Borrelia burgdorferi and Borrelia garinii.
Probab=25.69 E-value=37 Score=36.03 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHhhcCccCCCCcCcchh--hhcccccccccchhhhhHHHHhhcccCC-CCCC-----CcCccccccc
Q 012312 104 SECQIRILESYLAKLKDDSIQNSSESSGEI--EELHSRSGEINAKTELDSLDAYLGKLNT-DAKF-----STDQTTERNL 175 (466)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~-----~~~~~~~~~~ 175 (466)
+.|-+|+=++.+||+. +|...++.|...+ ++|-||..++..+++.++|....|++-= ++.. -.++.--..+
T Consensus 18 tkkaieqdi~~mek~l-kpkkssl~stk~i~k~nl~dkk~el~~q~k~e~lrervEkyrLt~TKkLmkQGm~FekArk~A 96 (431)
T PF05537_consen 18 TKKAIEQDISKMEKYL-KPKKSSLGSTKDIVKNNLSDKKKELSKQSKFESLRERVEKYRLTQTKKLMKQGMGFEKARKEA 96 (431)
T ss_pred HHHHHHHHHHHHHhhc-CcccccCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccchHHHHHHH
Confidence 3455555566666654 6888899988875 8999999999999999999999888762 2211 1223323333
Q ss_pred cccccccccccccccccccccchh
Q 012312 176 VAAQLSISKSSKRGYMGKLKGYRE 199 (466)
Q Consensus 176 ~~~p~~~~~~~~~~~~~~~~s~~~ 199 (466)
.-+.+-.++++++.++..+.+..+
T Consensus 97 fkrSLmsdrdkrrlEYkeLaKesk 120 (431)
T PF05537_consen 97 FKRSLMSDRDKRRLEYKELAKESK 120 (431)
T ss_pred HHHHhhccHHHHHhhHHHHHHHhh
Confidence 444556677777777766654333
No 35
>COG4769 Predicted membrane protein [Function unknown]
Probab=25.64 E-value=5.1e+02 Score=24.53 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=27.7
Q ss_pred hhchhHHHHHHHHHHHHhhhhh-cccCCCcccCChhHHHHHHHHHHHHHhc
Q 012312 306 SYGPFTFFLIYTLGGISGNLTS-FLHTPEPTVGGTGPVFAIIGAWLIYQFQ 355 (466)
Q Consensus 306 ~~G~~r~l~lyl~sgi~G~l~s-~l~~p~~~vGaSGaVfGLlga~~~~~~~ 355 (466)
.++.+..+.+-++=.+++.+++ -++.|....+++|++...++.++.....
T Consensus 51 ~l~~~~~~~~i~lr~il~AL~sGtlfs~~Fl~sfaG~i~S~L~m~~l~~f~ 101 (181)
T COG4769 51 TLNFKDALQTILLRVILQALFSGTLFSPVFLYSFAGAILSTLFMYFLYQFG 101 (181)
T ss_pred hccHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555555544444444443 2344555667777777777666665443
No 36
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=25.60 E-value=1.9e+02 Score=25.06 Aligned_cols=23 Identities=26% Similarity=0.056 Sum_probs=14.0
Q ss_pred HHHhhcCCc-HHHHHHHHHHHHHH
Q 012312 379 SFIISNFGP-VDTWAHLGAAFTGI 401 (466)
Q Consensus 379 ~~~l~~~~~-i~~~aHLgG~l~G~ 401 (466)
..+++.+|+ .++.||+-|+-.|.
T Consensus 43 ~l~~~ifP~~~~~vA~~lGi~~~~ 66 (115)
T PF10066_consen 43 LLILSIFPNILDWVAKLLGIGRPP 66 (115)
T ss_pred HHHHHhhhhHHHHHHHHHCCCchh
Confidence 334455666 56668988855443
No 37
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=25.15 E-value=6.6e+02 Score=27.17 Aligned_cols=57 Identities=12% Similarity=-0.017 Sum_probs=36.3
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhhhcccCC-Cc-------ccCChhHHHHHHHHHHHHHhccchh
Q 012312 303 VCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EP-------TVGGTGPVFAIIGAWLIYQFQNKDL 359 (466)
Q Consensus 303 lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p-~~-------~vGaSGaVfGLlga~~~~~~~~~~~ 359 (466)
+|..-+..-=.+=|++.|++-.++..++.. .- .+=||.++.++++.++.....+++.
T Consensus 315 fE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~ 379 (430)
T PF06123_consen 315 FELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWKR 379 (430)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 555555554556677777777776655432 22 2335778888888888887766653
No 38
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=24.86 E-value=56 Score=23.03 Aligned_cols=30 Identities=23% Similarity=0.476 Sum_probs=23.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhcCCcccc
Q 012312 434 NPCKSLIVFTIFVIILGSFIFVFEPPLDTL 463 (466)
Q Consensus 434 ~~~~~ll~f~i~vivl~~~lf~~~ppl~~~ 463 (466)
+.+.+++.+++|++++...+|+++--+|.+
T Consensus 8 dfylc~l~~llflv~imliif~f~le~qdl 37 (43)
T PF11395_consen 8 DFYLCFLSFLLFLVIIMLIIFWFSLEIQDL 37 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 356788999999988888888887665544
No 39
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=24.56 E-value=84 Score=30.89 Aligned_cols=60 Identities=17% Similarity=0.054 Sum_probs=39.7
Q ss_pred ccccceeEEeecCCCCC--HHHHHHHHHHHHHhhcCccCCCCcCcchhhhcccccccccchhhhhHHHHhhcccCCC
Q 012312 88 TKEKLRMVRCAAKSSDS--ECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTD 162 (466)
Q Consensus 88 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 162 (466)
.+.+.|.|+.=-.|.|. ||+|..+.+-+-|....-+...|.+.+.. .+-|.+|++.+|-+
T Consensus 103 nk~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~~~---------------~e~l~~fida~N~~ 164 (259)
T KOG2884|consen 103 NKNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAENN---------------TEKLFEFIDALNGK 164 (259)
T ss_pred CCCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEecccccc---------------HHHHHHHHHHhcCC
Confidence 45556777766677776 78888888888877777666666543331 25566777777753
No 40
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.21 E-value=1.3e+02 Score=30.48 Aligned_cols=28 Identities=14% Similarity=0.407 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCccccC
Q 012312 437 KSLIVFTIFVIILGSFIFVFEPPLDTLA 464 (466)
Q Consensus 437 ~~ll~f~i~vivl~~~lf~~~ppl~~~~ 464 (466)
..++.+++++.+++..++...|+.++-.
T Consensus 57 a~~~~~l~l~~lig~~~~~~~r~f~~~r 84 (281)
T COG4395 57 AAFLIFLLLITLIGFVIMLEMRFFDPYR 84 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 3566677777788888888888887643
No 41
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose.
Probab=24.00 E-value=93 Score=34.44 Aligned_cols=64 Identities=6% Similarity=0.024 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCccchhhHHhhhccccchhHHHHHHHHHHHHHHHHhhcCCccc
Q 012312 389 DTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDT 462 (466)
Q Consensus 389 ~~~aHLgG~l~G~l~g~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ll~f~i~vivl~~~lf~~~ppl~~ 462 (466)
-+.+-+||+++|++.++++.+.-..+- ++-..+. .-..-.-++..+..++++.++.+++|+.+.
T Consensus 135 l~~gVfgGIi~G~i~a~l~Nkf~~ikL-------P~~L~FF---~G~RfVpIi~~~~~~~l~~~~~~iWP~i~~ 198 (524)
T TIGR02005 135 LDTSIIGAIIISGIITYIHNRFFDKRL-------PVFLGIF---QGTTFVVTIAFFVMLPCAAITCLVWPKVQM 198 (524)
T ss_pred ecchhHHHHHHHHHHHHHHHHHhcccc-------chhhhhc---CCCcchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355679999999999999876432211 1111122 211112233333346667788888888763
No 42
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=23.23 E-value=8.7e+02 Score=25.38 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCC
Q 012312 389 DTWAHLGAAFTGIIYGFLTCPLVQLGD 415 (466)
Q Consensus 389 ~~~aHLgG~l~G~l~g~l~~~~~~~~~ 415 (466)
.+..-+|-|+++++|+++.+..++...
T Consensus 93 ~~q~vLg~Figtfvy~l~~l~~i~~~~ 119 (371)
T PF10011_consen 93 VTQVVLGTFIGTFVYSLLVLIAIRSGD 119 (371)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 455668889999999998877655333
No 43
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.13 E-value=1.9e+02 Score=24.82 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHhhhhhc
Q 012312 287 FHVALSCWALLTFGPQVCKSYGP-FTFFLIYTLGGISGNLTSF 328 (466)
Q Consensus 287 ~HLl~Nml~Ll~fG~~lE~~~G~-~r~l~lyl~sgi~G~l~s~ 328 (466)
.+++.-++.-.++|..|.+.+|+ ..+.+++++.|++.++...
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 34555666677889999999986 3556666777777666543
No 44
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=22.61 E-value=5e+02 Score=23.93 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhccccccCCc
Q 012312 387 PVDTWAHLGAAFTGIIYGFLTCPLVQLGDA 416 (466)
Q Consensus 387 ~i~~~aHLgG~l~G~l~g~l~~~~~~~~~~ 416 (466)
.+.++--+.+++.|.++++.+...-+++.+
T Consensus 54 ~~~~~~~l~A~~~G~lFs~~Li~ts~fEvr 83 (148)
T PF07301_consen 54 RPPWLEVLEAFLVGALFSYPLIKTSKFEVR 83 (148)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhceEEEE
Confidence 456677788889999999888765554443
No 45
>PTZ00207 hypothetical protein; Provisional
Probab=22.56 E-value=1.1e+03 Score=26.42 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=20.5
Q ss_pred HHHHHhhchhHHHHHHHHHHHHhhhhhcc
Q 012312 301 PQVCKSYGPFTFFLIYTLGGISGNLTSFL 329 (466)
Q Consensus 301 ~~lE~~~G~~r~l~lyl~sgi~G~l~s~l 329 (466)
..+-..+|+++.+.+-.+...+|.+...+
T Consensus 82 G~L~Dr~G~R~vllig~ll~~iG~ll~al 110 (591)
T PTZ00207 82 SFIYDYLGPRPIFVLSMTVFCLGTLLFAL 110 (591)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 35666789999888777766666665544
No 46
>PRK11056 hypothetical protein; Provisional
Probab=22.48 E-value=4.3e+02 Score=23.51 Aligned_cols=51 Identities=20% Similarity=0.198 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHHHHhhhh-hcccCCCcccCChhHHHHHHHHHHHHHhccchhhhh
Q 012312 308 GPFTFFLIYTLGGISGNLT-SFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAK 362 (466)
Q Consensus 308 G~~r~l~lyl~sgi~G~l~-s~l~~p~~~vGaSGaVfGLlga~~~~~~~~~~~l~~ 362 (466)
-.++.+++-++.|+.++.. ++++.. .|-. ++|-+++..+..+-...+++..
T Consensus 7 ~ek~tLlLaliaGl~~ng~fs~Lf~s--~VpF--SiFPlIaLvLavycLyQ~Yl~~ 58 (120)
T PRK11056 7 QEKGTLLLALIAGLSINGTFAALFSS--IVPF--SIFPLIALVLAVYCLHQRYLNR 58 (120)
T ss_pred cchhhHHHHHHHHHhhchhhHHHHcc--cccc--HHHHHHHHHHHHHHHHHHHhcC
Confidence 3466778888888888764 444443 3323 4666666555544444444443
No 47
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=21.27 E-value=9.2e+02 Score=24.92 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCccccCC
Q 012312 438 SLIVFTIFVIILGSFIFVFEPPLDTLAL 465 (466)
Q Consensus 438 ~ll~f~i~vivl~~~lf~~~ppl~~~~~ 465 (466)
.+..+...+++...+++...+++|.+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L 213 (325)
T TIGR03869 186 SVAIAGGALLVVGLVLLASGRVLDAFAF 213 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 3444444444455566778999998865
No 48
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=20.88 E-value=3.7e+02 Score=29.45 Aligned_cols=16 Identities=38% Similarity=0.401 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 012312 392 AHLGAAFTGIIYGFLT 407 (466)
Q Consensus 392 aHLgG~l~G~l~g~l~ 407 (466)
+.+|++++|++...++
T Consensus 179 ~~~g~i~ggliA~g~~ 194 (495)
T KOG2533|consen 179 ASLGNIFGGLIAYGVF 194 (495)
T ss_pred cchhhHHHHHHHHHhh
Confidence 4577888887766544
No 49
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=20.76 E-value=8.3e+02 Score=24.19 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 012312 389 DTWAHLGAAFTGIIYGFLTCPL 410 (466)
Q Consensus 389 ~~~aHLgG~l~G~l~g~l~~~~ 410 (466)
..+.-+.|.++|++...+..+.
T Consensus 210 ~~~~v~~~~la~l~~~~l~~~~ 231 (238)
T COG1296 210 GPWAVLAGILAGLLAALLLAAK 231 (238)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4567778888888887776543
No 50
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.01 E-value=98 Score=27.90 Aligned_cols=22 Identities=32% Similarity=0.204 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 012312 389 DTWAHLGAAFTGIIYGFLTCPL 410 (466)
Q Consensus 389 ~~~aHLgG~l~G~l~g~l~~~~ 410 (466)
.|.+-+.|+++|+++|+++.+-
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rl 28 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARL 28 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888999999888753
Done!