Query 012312
Match_columns 466
No_of_seqs 284 out of 1683
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 100.0 3.8E-28 1.3E-32 226.5 15.3 178 223-409 3-180 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 1.8E-28 6.3E-33 231.4 8.5 179 222-410 7-186 (196)
3 2lv7_A Calcium-binding protein 30.8 45 0.0015 26.6 3.9 62 101-165 28-89 (100)
4 2ktg_A Calmodulin, putative; e 20.6 98 0.0033 22.6 3.9 55 101-157 6-60 (85)
5 1wve_C 4-cresol dehydrogenase 16.5 89 0.0031 23.3 2.8 24 101-124 56-79 (80)
6 3fia_A Intersectin-1; EH 1 dom 14.9 1.5E+02 0.0052 24.9 4.1 60 100-165 24-83 (121)
7 3dr0_A Cytochrome C6; photosyn 14.9 1.1E+02 0.0039 22.7 3.1 24 99-122 68-91 (93)
8 2joj_A Centrin protein; N-term 14.4 1.2E+02 0.0041 21.5 3.0 51 104-156 2-52 (77)
9 2opo_A Polcalcin CHE A 3; calc 14.0 1.5E+02 0.0051 21.6 3.5 53 101-156 3-55 (86)
10 1c6r_A Cytochrome C6; electron 13.7 1.3E+02 0.0045 22.3 3.1 23 99-121 64-86 (89)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.95 E-value=3.8e-28 Score=226.50 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=131.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHHH
Q 012312 223 NLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ 302 (466)
Q Consensus 223 ~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~ 302 (466)
.|++|..++++|+++|+++...+... ...+.+..+..+.++||||++|++|+|.|+.|+++||+.++.+|..
T Consensus 3 ~~pvt~~li~~~v~vf~~~~~~~~~~--------~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~ 74 (181)
T 2xov_A 3 AGPVTWVMMIACVVVFIAMQILGDQE--------VMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGA 74 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHHH--------HHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCcHH--------HHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 46799999999999999986543210 1122222223467899999999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhhhcccCCCcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHh
Q 012312 303 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 382 (466)
Q Consensus 303 lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l 382 (466)
+|+.+|++|++.+|++++++|+++++++.+...+||||++||++++.++.....+... ..++.++.....+.+.+.+..
T Consensus 75 ~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~-~~l~~~~~~~~~~~~~~~~~~ 153 (181)
T 2xov_A 75 VEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSG-IYLQRGLIIFALIWIVAGWFD 153 (181)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGS-CCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCce-eeeHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888776799999999999998765332222211 011222222222222222222
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHHHhcc
Q 012312 383 SNFGPVDTWAHLGAAFTGIIYGFLTCP 409 (466)
Q Consensus 383 ~~~~~i~~~aHLgG~l~G~l~g~l~~~ 409 (466)
...+++|++||++|+++|+++++++.+
T Consensus 154 ~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 154 LFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHhc
Confidence 223589999999999999999998754
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.95 E-value=1.8e-28 Score=231.44 Aligned_cols=179 Identities=18% Similarity=0.307 Sum_probs=132.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHH
Q 012312 222 SNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP 301 (466)
Q Consensus 222 ~~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~ 301 (466)
..+++|..++++|+++|+++...+... ...+.+..+..+..+||||++|++|+|.|+.|+++||+.++.+|.
T Consensus 7 ~~~pvt~~li~~~v~vfll~~~~~~~~--------~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~ 78 (196)
T 2nr9_A 7 QQGKITLILTALCVLIYIAQQLGFEDD--------IMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGG 78 (196)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCcHH--------HHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 446799999999999999987543210 112222222345789999999999999999999999999999999
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhhhcccCCCcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHH
Q 012312 302 QVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 381 (466)
Q Consensus 302 ~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~ 381 (466)
.+|+.+|++|++.+|++++++|+++++++.+...+||||++||++++.+........... .+..+...+.+.+.+.+.
T Consensus 79 ~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 156 (196)
T 2nr9_A 79 MIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFD--LPEGFFTMLLVGIALGFI 156 (196)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCC--CCCSSTTTTTTTTTHHHH
T ss_pred HHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcchhhc--chHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887767999999999999987665333322111 111111111111122222
Q ss_pred hh-cCCcHHHHHHHHHHHHHHHHHHHhccc
Q 012312 382 IS-NFGPVDTWAHLGAAFTGIIYGFLTCPL 410 (466)
Q Consensus 382 l~-~~~~i~~~aHLgG~l~G~l~g~l~~~~ 410 (466)
.. ..+++|++||+||+++|+++++++.++
T Consensus 157 ~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~ 186 (196)
T 2nr9_A 157 SPLFGVEMGNAAHISGLIVGLIWGFIDSKL 186 (196)
T ss_dssp SCSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 11 234799999999999999999988654
No 3
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=30.83 E-value=45 Score=26.56 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHhhcCccCCCCcCcchhhhcccccccccchhhhhHHHHhhcccCCCCCC
Q 012312 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF 165 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 165 (466)
...++++++.+.+-|..+ |.+....++.+++.+...+-+.....++++.+.+.+|. |.++.+
T Consensus 28 ~~l~~~~~~el~~~F~~~--D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~-d~dG~I 89 (100)
T 2lv7_A 28 VDIPEDELEEIREAFKVF--DRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDM-DGDGQV 89 (100)
T ss_dssp CCCCGGGHHHHHHHHHHT--CSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCS-SCSSSB
T ss_pred ccCCHHHHHHHHHHHHHH--cCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCC-CCCCeE
Confidence 346788899999999988 34455667777777777777777778888888777543 444433
No 4
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=20.62 E-value=98 Score=22.59 Aligned_cols=55 Identities=5% Similarity=0.030 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHhhcCccCCCCcCcchhhhcccccccccchhhhhHHHHhhc
Q 012312 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLG 157 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~ 157 (466)
...++++.+.+...|..+-. +.....+.+++.....+-+.....++++.+...++
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~--d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 60 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDK--DNDNKLTAEELGTVMRALGANPTKQKISEIVKDYD 60 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCT--TCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHHS
T ss_pred hhCCHHHHHHHHHHHHHHCC--CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 45788999999999998843 33444555666666666665566677777766643
No 5
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=16.52 E-value=89 Score=23.26 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcCccC
Q 012312 101 SSDSECQIRILESYLAKLKDDSIQ 124 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~ 124 (466)
...|++|++.|..|+..+...+.+
T Consensus 56 ~~ls~~ei~~l~~yl~~~~~~~~~ 79 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSSLPAPAAQ 79 (80)
T ss_dssp TTSCHHHHHHHHHHHHHSCCC---
T ss_pred cCCCHHHHHHHHHHHHHCcCCCCC
Confidence 568999999999999998876543
No 6
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=14.91 E-value=1.5e+02 Score=24.87 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCccCCCCcCcchhhhcccccccccchhhhhHHHHhhcccCCCCCC
Q 012312 100 KSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF 165 (466)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 165 (466)
+-.++++|.+..+.-|.++. + ....+++++..+...+++. +++++..+-+ |-+.++|+.+
T Consensus 24 ~W~it~ee~~~y~~iF~~lD--~-~dG~Isg~elr~~~~~sgL--p~~~L~~Iw~-laD~d~dG~L 83 (121)
T 3fia_A 24 TWAITVEERAKHDQQFHSLK--P-ISGFITGDQARNFFFQSGL--PQPVLAQIWA-LADMNNDGRM 83 (121)
T ss_dssp TSCCCHHHHHHHHHHHHHTC--C-BTTBEEHHHHHHHHGGGCC--CHHHHHHHHH-HHCTTCSSEE
T ss_pred CCCCCHHHHHHHHHHHHHhC--C-CCCeECHHHHHHHHHHcCC--CHHHHHHHHH-HHcCCCCCcC
Confidence 34578899999999999994 3 4667888887777777753 5666666644 3666777755
No 7
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=14.88 E-value=1.1e+02 Score=22.67 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhhcCc
Q 012312 99 AKSSDSECQIRILESYLAKLKDDS 122 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~ 122 (466)
+....|++|++.|..|+..+.+++
T Consensus 68 ~~~~ls~~ei~~l~~yl~~l~~~~ 91 (93)
T 3dr0_A 68 FGGRLSDADIANVAAYIADQAENN 91 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcC
Confidence 446789999999999999988764
No 8
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=14.45 E-value=1.2e+02 Score=21.50 Aligned_cols=51 Identities=18% Similarity=0.055 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHhhcCccCCCCcCcchhhhcccccccccchhhhhHHHHhh
Q 012312 104 SECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYL 156 (466)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l 156 (466)
++++.+.+...|.++-.+ .....+.+++......-+.....++++.+...+
T Consensus 2 s~~~~~~l~~~F~~~D~d--~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 52 (77)
T 2joj_A 2 SEEQKQEIKEAFDLFDTN--KTGSIDYHELKVAMRALGFDVKKPEILELMNEY 52 (77)
T ss_dssp CHHHHHHHHHHHHHHCCS--SSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 678889999999988433 334455555555555555545566666666554
No 9
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=14.03 E-value=1.5e+02 Score=21.63 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcCccCCCCcCcchhhhcccccccccchhhhhHHHHhh
Q 012312 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYL 156 (466)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l 156 (466)
+..++++.+.+...|..+-. +.....+.+++...+..-+ ....++++.+...+
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~--d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~ 55 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDT--NGDGKISSSELGDALKTLG-SVTPDEVRRMMAEI 55 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCT--TCSSEEEHHHHHHHHHTTT-TCCHHHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHCC--CCCCCcCHHHHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 35678889999999998843 3344455556666666555 45566677666654
No 10
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=13.69 E-value=1.3e+02 Score=22.29 Aligned_cols=23 Identities=9% Similarity=0.120 Sum_probs=19.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhhcC
Q 012312 99 AKSSDSECQIRILESYLAKLKDD 121 (466)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~ 121 (466)
+....|++|++.|..|+..+.++
T Consensus 64 ~~~~ls~~ei~~l~~yl~~~~~~ 86 (89)
T 1c6r_A 64 WSGTLDDDEIAAVAAYVYDQASG 86 (89)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHHHccC
Confidence 44578999999999999998764
Done!