Query 012313
Match_columns 466
No_of_seqs 115 out of 1346
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 01:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12849 groEL chaperonin GroE 100.0 5.3E-98 1E-102 798.2 48.9 455 5-466 52-516 (542)
2 PRK12852 groEL chaperonin GroE 100.0 5.6E-98 1E-102 800.4 48.9 456 5-466 53-518 (545)
3 PRK00013 groEL chaperonin GroE 100.0 6.6E-98 1E-102 797.4 49.0 456 5-466 52-517 (542)
4 PRK14104 chaperonin GroEL; Pro 100.0 1.2E-97 3E-102 796.1 47.6 456 5-466 53-518 (546)
5 PTZ00114 Heat shock protein 60 100.0 1.9E-97 4E-102 797.2 48.7 456 5-466 64-533 (555)
6 cd03344 GroEL GroEL_like type 100.0 3.3E-97 7E-102 789.8 49.5 455 5-466 50-514 (520)
7 CHL00093 groEL chaperonin GroE 100.0 3E-97 7E-102 792.1 47.3 458 5-466 52-518 (529)
8 TIGR02348 GroEL chaperonin Gro 100.0 5.9E-97 1E-101 789.1 48.8 454 5-466 51-515 (524)
9 PRK12850 groEL chaperonin GroE 100.0 1.4E-96 3E-101 788.1 48.7 459 5-466 53-517 (544)
10 PRK12851 groEL chaperonin GroE 100.0 4E-96 9E-101 784.2 47.9 455 5-466 53-517 (541)
11 PLN03167 Chaperonin-60 beta su 100.0 9E-96 2E-100 786.3 46.4 455 5-466 108-574 (600)
12 KOG0356 Mitochondrial chaperon 100.0 1.3E-83 2.9E-88 653.5 33.8 454 7-465 68-529 (550)
13 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2.2E-80 4.7E-85 657.1 34.8 395 5-466 54-476 (484)
14 TIGR02347 chap_CCT_zeta T-comp 100.0 1E-79 2.3E-84 657.4 40.3 401 5-466 58-519 (531)
15 cd03343 cpn60 cpn60 chaperonin 100.0 3.4E-79 7.3E-84 654.3 40.2 401 5-466 57-510 (517)
16 TIGR02339 thermosome_arch ther 100.0 7.7E-79 1.7E-83 651.3 40.1 401 5-466 58-513 (519)
17 cd03335 TCP1_alpha TCP-1 (CTT 100.0 9.9E-79 2.1E-83 651.3 40.1 406 5-466 50-519 (527)
18 TIGR02342 chap_CCT_delta T-com 100.0 7.9E-79 1.7E-83 650.3 38.4 407 5-466 51-510 (517)
19 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.5E-78 3.2E-83 648.8 37.9 408 5-466 50-509 (515)
20 TIGR02340 chap_CCT_alpha T-com 100.0 4.8E-78 1E-82 646.8 39.8 406 5-466 54-523 (536)
21 cd03339 TCP1_epsilon TCP-1 (CT 100.0 4.5E-78 9.8E-83 646.0 38.8 401 5-466 65-521 (526)
22 COG0459 GroL Chaperonin GroEL 100.0 5.7E-80 1.2E-84 652.3 23.7 432 6-466 54-507 (524)
23 TIGR02343 chap_CCT_epsi T-comp 100.0 7.7E-78 1.7E-82 644.0 38.9 401 5-466 69-525 (532)
24 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.7E-77 3.8E-82 641.3 40.4 404 5-466 58-513 (522)
25 TIGR02344 chap_CCT_gamma T-com 100.0 1.8E-77 3.9E-82 641.6 39.2 401 5-466 58-515 (525)
26 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.2E-76 2.7E-81 633.4 41.1 400 5-466 57-507 (517)
27 TIGR02345 chap_CCT_eta T-compl 100.0 6.7E-77 1.4E-81 636.2 38.7 404 5-466 59-513 (522)
28 TIGR02346 chap_CCT_theta T-com 100.0 2.5E-77 5.5E-82 639.9 34.3 400 5-466 60-513 (531)
29 PTZ00212 T-complex protein 1 s 100.0 2.2E-76 4.8E-81 633.3 40.1 400 5-466 69-519 (533)
30 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2.4E-76 5.3E-81 625.9 35.6 384 5-466 58-474 (480)
31 KOG0361 Chaperonin complex com 100.0 6.5E-77 1.4E-81 579.3 24.4 403 6-466 63-516 (543)
32 TIGR02341 chap_CCT_beta T-comp 100.0 1.6E-75 3.5E-80 624.4 37.1 400 5-466 58-508 (519)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.5E-74 3.2E-79 611.1 37.7 386 5-466 50-465 (472)
34 cd00309 chaperonin_type_I_II c 100.0 7E-74 1.5E-78 606.0 39.5 384 5-466 50-459 (464)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 6E-69 1.3E-73 571.0 36.5 401 5-466 31-477 (485)
36 KOG0358 Chaperonin complex com 100.0 7.2E-70 1.6E-74 529.2 24.1 413 6-466 69-527 (534)
37 KOG0363 Chaperonin complex com 100.0 3.3E-67 7.2E-72 508.5 28.9 399 6-466 63-512 (527)
38 KOG0360 Chaperonin complex com 100.0 2.8E-62 6.1E-67 487.7 22.9 404 6-466 62-529 (545)
39 KOG0364 Chaperonin complex com 100.0 3.4E-62 7.4E-67 483.0 21.2 399 7-466 63-514 (527)
40 KOG0362 Chaperonin complex com 100.0 4.3E-59 9.2E-64 467.8 29.4 407 5-466 68-514 (537)
41 KOG0359 Chaperonin complex com 100.0 4.5E-59 9.8E-64 460.3 22.0 399 6-465 60-507 (520)
42 KOG0357 Chaperonin complex com 100.0 1E-55 2.3E-60 425.0 15.4 306 15-466 71-389 (400)
43 cd03333 chaperonin_like chaper 100.0 2.7E-27 5.8E-32 225.0 20.3 192 95-358 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 2E-25 4.4E-30 218.8 21.1 198 108-359 20-254 (261)
45 KOG0230 Phosphatidylinositol-4 98.7 1.5E-07 3.2E-12 107.1 14.6 186 128-368 364-577 (1598)
46 COG0459 GroL Chaperonin GroEL 97.5 0.00015 3.2E-09 78.1 6.1 89 186-290 259-354 (524)
47 smart00574 POX domain associat 52.6 28 0.00061 30.8 4.9 42 337-378 85-127 (140)
48 PRK13600 putative ribosomal pr 42.1 68 0.0015 25.9 5.2 54 189-252 21-74 (84)
49 PF07526 POX: Associated with 41.7 42 0.0009 29.9 4.3 42 337-378 85-127 (140)
50 TIGR02345 chap_CCT_eta T-compl 29.9 20 0.00044 38.9 0.5 60 196-256 246-314 (522)
51 PRK06683 hypothetical protein; 28.5 1.5E+02 0.0032 23.7 5.2 54 190-253 20-73 (82)
52 TIGR02341 chap_CCT_beta T-comp 27.4 1.3E+02 0.0028 32.7 6.1 42 117-159 168-211 (519)
53 COG3962 Acetolactate synthase 25.7 33 0.00072 36.5 1.1 39 342-380 216-254 (617)
54 PRK13602 putative ribosomal pr 24.3 1.9E+02 0.004 23.1 5.0 53 190-252 20-72 (82)
55 PRK10343 RNA-binding protein Y 24.2 4.2E+02 0.0091 22.0 7.4 68 187-256 8-77 (97)
56 PRK13601 putative L7Ae-like ri 23.6 2.1E+02 0.0045 23.0 5.2 53 190-252 17-69 (82)
57 PF01985 CRS1_YhbY: CRS1 / Yhb 22.9 2.5E+02 0.0054 22.4 5.6 66 189-256 8-75 (84)
58 PF07818 HCNGP: HCNGP-like pro 21.6 1.4E+02 0.0031 24.7 4.0 55 399-461 30-85 (96)
59 PF01248 Ribosomal_L7Ae: Ribos 21.3 2.7E+02 0.0058 22.3 5.6 54 190-252 24-77 (95)
60 PF04312 DUF460: Protein of un 21.0 1.4E+02 0.0029 26.6 3.8 42 187-257 66-107 (138)
61 PLN02512 acetylglutamate kinas 20.9 2.1E+02 0.0045 28.8 5.9 47 318-366 42-90 (309)
No 1
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.3e-98 Score=798.17 Aligned_cols=455 Identities=40% Similarity=0.575 Sum_probs=437.5
Q ss_pred HHHhhccccccCc----cccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (466)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~ 79 (466)
..|||++|+++|| +||++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|++.
T Consensus 52 GaTIlk~i~~~hp~~~~~a~ll------~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~ 125 (542)
T PRK12849 52 GVSIAKEIELEDPFENLGAQLV------KEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEA 125 (542)
T ss_pred HHHHHHHcccCCccHhHHHHHH------HHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4699999999999 78888 6899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccc
Q 012313 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (466)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~ 159 (466)
++++|+++++|+++.++|.++|+||+++++.+++++++|+.+++.++.+.++.|++.+|++++++|++|+++|.+|+|.+
T Consensus 126 ~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~ 205 (542)
T PRK12849 126 VVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVT 205 (542)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccc
Confidence 99999999999988888999999999989999999999999999888889999998888899999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchh
Q 012313 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (466)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (466)
+.+.++..++||+|+++|.+|++++++.++++++.++|+||||++++|+++++++|..|+++|.++|++||+|+||++|+
T Consensus 206 ~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~ 285 (542)
T PRK12849 206 DPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRK 285 (542)
T ss_pred cccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012313 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (466)
Q Consensus 240 ~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (466)
++++|||++|||+++++..+.+++++++++||+|++|++++++|+++++++++++++.|+++|+++++++++ ++|+
T Consensus 286 ~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~ 365 (542)
T PRK12849 286 AMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQ 365 (542)
T ss_pred hHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999999999988777899999999999999999999999999999999999999999999998776 9999
Q ss_pred HHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012313 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (466)
Q Consensus 316 ~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 395 (466)
||++||+|+.|||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|+.|++++..++++|+++++|++|
T Consensus 366 eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~A 445 (542)
T PRK12849 366 ERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRA 445 (542)
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999983389999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 396 L~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|+.|||+||+|||+|+.++ .+|++.. +++|||+.+|++.||++.|||||+.||.++|++|+++|++||+|
T Consensus 446 l~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~i 516 (542)
T PRK12849 446 LEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTT 516 (542)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999 9998754 68999999999999999999999999999999999999999986
No 2
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.6e-98 Score=800.38 Aligned_cols=456 Identities=37% Similarity=0.568 Sum_probs=438.0
Q ss_pred HHHhhcccccc----CccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (466)
Q Consensus 5 ~~~il~~~~~~----~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~ 79 (466)
..|||++|++. ||.||++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|.+.
T Consensus 53 G~TIlk~i~~~~~~~~p~akll------~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (545)
T PRK12852 53 GVTVAKEIELEDKFENMGAQMV------REVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAA 126 (545)
T ss_pred HHHHHHHccCCCcccChHHHHH------HHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 57999999995 8889998 6889999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccc
Q 012313 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (466)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~ 159 (466)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.+++.++.|.++.|++..+++++++|++|++||.+|||.+
T Consensus 127 ~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~ 206 (545)
T PRK12852 127 VVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVT 206 (545)
T ss_pred HHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCcccc
Confidence 99999999999987778999999999888999999999999999888899999888777899999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchh
Q 012313 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (466)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (466)
++++++.++++|+|+++|.+++++++++|+++++.++|+||||++++|+++++++|+.|+.++.++|++||+|+||+.|+
T Consensus 207 ~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~ 286 (545)
T PRK12852 207 NAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (545)
T ss_pred ccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012313 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (466)
Q Consensus 240 ~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (466)
++|+|||++|||++++++.+.+++++++++||+|++|+++++++++++++++++.++.|+++|+.+++++.+ ++|+
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (545)
T PRK12852 287 AMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQ 366 (545)
T ss_pred hHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999999999987777899999999999999999999999999999999999999999999998766 9999
Q ss_pred HHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012313 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (466)
Q Consensus 316 ~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 395 (466)
+||+||+|+++||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|+.|++++..++++|+|+++|++|
T Consensus 367 ~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 446 (545)
T PRK12852 367 ERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKA 446 (545)
T ss_pred HHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886678899999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 396 L~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|+.|||+||+|||+|+.++ .+|++..++++|||+.+|++.||++.|||||+.||.++|++|+++|++||+|
T Consensus 447 L~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (545)
T PRK12852 447 LEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTT 518 (545)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999 9998755678999999999999999999999999999999999999999986
No 3
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.6e-98 Score=797.43 Aligned_cols=456 Identities=39% Similarity=0.556 Sum_probs=436.0
Q ss_pred HHHhhccccccCcc----ccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTT----GTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (466)
Q Consensus 5 ~~~il~~~~~~~p~----~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~ 79 (466)
..||||+|+++||+ +|++ +++|++||+++||||||+|+|+++||+++.+|++ |+||+.|++||++|.+.
T Consensus 52 G~tIlk~i~~~hp~~~~~akll------~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~ 125 (542)
T PRK00013 52 GVTVAKEIELEDPFENMGAQLV------KEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEA 125 (542)
T ss_pred HHHHHHHccCCCchhhHHHHHH------HHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 46999999999995 7776 7999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccc
Q 012313 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (466)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~ 159 (466)
++++|+++++|+++.++|.++|++|+++++.+++++++|+..++.++.|.|+.+.+..+++++++|++|+++|.+|||.+
T Consensus 126 ~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~ 205 (542)
T PRK00013 126 AVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVT 205 (542)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccc
Confidence 99999999999988889999999999889999999999999999888889987776778899999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchh
Q 012313 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (466)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (466)
+++.++..++||+|+++|.+|++++++.++++++.++|+||||++++|+++++++|+.|+++|.++|++||+|+||+.|+
T Consensus 206 ~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~ 285 (542)
T PRK00013 206 DPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRK 285 (542)
T ss_pred cccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012313 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (466)
Q Consensus 240 ~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (466)
++|+|||++|||++++++.|.+++++++++||+|++|+++++++++++++++++.+..|+++|+++++++.+ ++|+
T Consensus 286 ~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 365 (542)
T PRK00013 286 AMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQ 365 (542)
T ss_pred hhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 999999999999999988777899999999999999999999999999999999999999999999998776 9999
Q ss_pred HHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012313 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (466)
Q Consensus 316 ~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 395 (466)
||++||+|+.+||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|++|+++...++++|+++++|++|
T Consensus 366 eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~A 445 (542)
T PRK00013 366 ERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEALKGLNGDEATGINIVLRA 445 (542)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999833489999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 396 L~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|+.|||+||+|||+|+.++ .+|++..++++|||+.+|++.||++.|||||+.||+++|+.|+++|++||+|
T Consensus 446 l~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (542)
T PRK00013 446 LEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTT 517 (542)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9998754678999999999999999999999999999999999999999986
No 4
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.2e-97 Score=796.05 Aligned_cols=456 Identities=38% Similarity=0.575 Sum_probs=439.0
Q ss_pred HHHhhcccccc----CccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (466)
Q Consensus 5 ~~~il~~~~~~----~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~ 79 (466)
..||+++|+++ ||.+|++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||++|.+.
T Consensus 53 G~tIlk~i~~~d~~~~pgakll------~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (546)
T PRK14104 53 GVTVAKEIELEDKFENMGAQMV------REVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEA 126 (546)
T ss_pred HHHHHHHhcCCCcccChHHHHH------HHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Confidence 57999999999 9999998 6899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccc
Q 012313 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (466)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~ 159 (466)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.++|.++.|.++.+++.++++++++|++|++||.+|||.+
T Consensus 127 ~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~ 206 (546)
T PRK14104 127 VVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVT 206 (546)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhc
Confidence 99999999999987778999999999989999999999999999989999998877777899999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchh
Q 012313 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (466)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (466)
+++.++.++++|+|+++|.+++++++++|+++++.++|+||||++++|+++|+++|..|++++.++|+|||+|+||+.|+
T Consensus 207 ~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~ 286 (546)
T PRK14104 207 NADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (546)
T ss_pred CcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012313 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (466)
Q Consensus 240 ~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (466)
++|+|||++|||++++++.++.++++++++||+|++|+++++++++++++++++.++.|+++|+++++++++ ++|+
T Consensus 287 ~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (546)
T PRK14104 287 AMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQ 366 (546)
T ss_pred HHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999998888899999999999999999999999999999999999999999999998876 9999
Q ss_pred HHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012313 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (466)
Q Consensus 316 ~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 395 (466)
|||+||+|+++||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|..|+++...++++|+|+++|++|
T Consensus 367 eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~A 446 (546)
T PRK14104 367 ERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKA 446 (546)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998854588999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 396 L~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|+.||++||+|||+|+.++ .+|++.+++++|||+.+|++.||++.|||||+.||.++|++|+++|++||+|
T Consensus 447 l~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~i 518 (546)
T PRK14104 447 LSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITT 518 (546)
T ss_pred HHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9998755678999999999999999999999999999999999999999985
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1.9e-97 Score=797.22 Aligned_cols=456 Identities=41% Similarity=0.608 Sum_probs=436.9
Q ss_pred HHHhhccccccCc----cccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (466)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~ 79 (466)
..||+++|+++|| +|+++ +++|++||+++||||||+|+||++||+++.+|++ |+||..|++||++|.+.
T Consensus 64 G~TIlk~i~~~~p~~~~~a~ll------~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~ 137 (555)
T PTZ00114 64 GVTVAKAIEFSDRFENVGAQLI------RQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKV 137 (555)
T ss_pred hHHHHHhcCcCCcchhHHHHHH------HHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4699999999999 88887 7899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccc
Q 012313 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (466)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~ 159 (466)
++++|+++++|+++.++|.++|+||+++++.+++++++|+.+++.++.|.+++|++++|++++++|++|+++|.+|||.+
T Consensus 138 ~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~ 217 (555)
T PTZ00114 138 VLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVT 217 (555)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEecccccccccc
Confidence 99999999999988888999999999888999999999999999888899999999888779999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchh
Q 012313 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (466)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (466)
+++.++.++++|+|+++|.+|+++++++|+++++.++|+||+|++++|+++++++|..|+++|.++|++||+|+||+.++
T Consensus 218 ~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~ 297 (555)
T PTZ00114 218 NEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRK 297 (555)
T ss_pred ccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchH
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCC-CCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHH
Q 012313 240 AIMEDLAILTGGQVLTGG-SGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKL 314 (466)
Q Consensus 240 ~~le~la~~tG~~i~~~~-~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l 314 (466)
++|+|||++|||+++++. .+..++++++++||+|++|+++++++++++++++++.|+.|+.+|+.++++.++ ++|
T Consensus 298 ~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l 377 (555)
T PTZ00114 298 DILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKL 377 (555)
T ss_pred HHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999997 677788999999999999999999999999999999999999999999987665 999
Q ss_pred HHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcC--C-ChhHHHHHHH
Q 012313 315 KDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT--T-NSDQKIGVQI 391 (466)
Q Consensus 315 ~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~--~-~~~~q~~i~~ 391 (466)
++||+||+|+.|||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|..|++++. . ++++|+|+++
T Consensus 378 ~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~ 457 (555)
T PTZ00114 378 KERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKI 457 (555)
T ss_pred HHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998874 3 7899999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 392 VQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 392 ~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|++||+.|||+||+|||+|+.++ .+|++.+++++|||+.+|++.||++.|||||+.||.++|++|+++|++||+|
T Consensus 458 ~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~i 533 (555)
T PTZ00114 458 VRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTT 533 (555)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999 9997756678999999999999999999999999999999999999999985
No 6
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.3e-97 Score=789.83 Aligned_cols=455 Identities=42% Similarity=0.606 Sum_probs=437.1
Q ss_pred HHHhhccccccCc----cccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (466)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~ 79 (466)
..||+++|+++|| ++|++ +++|++||+++||||||+++||++||+++.++++ |+||..|++||+.|.+.
T Consensus 50 G~tIlk~i~~~hp~~~~~a~ll------~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~ 123 (520)
T cd03344 50 GVTVAKEIELEDPFENMGAQLV------KEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEA 123 (520)
T ss_pred HHHHHHHcccCCcchhHHHHHH------HHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 4699999999999 66666 7999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccc
Q 012313 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (466)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~ 159 (466)
++++|+++++|+++.++|.++|+||+++++.+++++++|+..++.++.|.+++|++..|++++++|++|+++|.+|+|..
T Consensus 124 ~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~ 203 (520)
T cd03344 124 VVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVT 203 (520)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCcccc
Confidence 99999999999988889999999999999999999999999999888889999999888799999999999999999998
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchh
Q 012313 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (466)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (466)
+|++++.++++|+|+++|.++++++++.++++++.++|+||+|++++|+++++++|..|++++.+++++||+|++|+.++
T Consensus 204 ~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~ 283 (520)
T cd03344 204 DPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRK 283 (520)
T ss_pred CcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccH
Confidence 88888899999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012313 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (466)
Q Consensus 240 ~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (466)
++++|||++|||++++++++.+++++++++||+|++|+++++++++++++++++.++.|+++|+++++++++ ++|+
T Consensus 284 ~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 363 (520)
T cd03344 284 AMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQ 363 (520)
T ss_pred HHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999987777789999999999999999999999999999999999999999999998776 9999
Q ss_pred HHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012313 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (466)
Q Consensus 316 ~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 395 (466)
||++||+|++|||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|++|++++..++++|+|+++|++|
T Consensus 364 eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~A 443 (520)
T cd03344 364 ERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRA 443 (520)
T ss_pred HHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876789999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 396 L~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|+.|||+||+|||+|+.++ ++|++..+ ++|||+.+|++.||++.|||||+.||.++|++|+++|++||+|
T Consensus 444 l~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~i 514 (520)
T cd03344 444 LEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTT 514 (520)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999 99987544 8999999999999999999999999999999999999999986
No 7
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=3e-97 Score=792.12 Aligned_cols=458 Identities=34% Similarity=0.516 Sum_probs=436.7
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+++++ +.+.+++|.+|++++||||||+||||++||++|.+|++ |+||+.|++||++|.+.+++.
T Consensus 52 G~tIlk~i~~~hp~a~~g--~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~ 129 (529)
T CHL00093 52 GVTIAKEIELEDHIENTG--VALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQ 129 (529)
T ss_pred HHHHHHHccCcCHHHHHH--HHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999988 88889999999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccccccc
Q 012313 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (466)
Q Consensus 84 L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~~~~~ 163 (466)
|+++++|+++.++|.+||++|+++++.+++++++|+.+++.++.|.++.|++..+++++++|++|+++|.+|||.+++++
T Consensus 130 L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~ 209 (529)
T CHL00093 130 IAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTER 209 (529)
T ss_pred HHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCcc
Confidence 99999999888899999999999999999999999999998888888887777788999999999999999999999999
Q ss_pred ceeeecCceEEEeccccCCH-HHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHH
Q 012313 164 KECVLDGALVLIYDTKISNS-NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM 242 (466)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~-~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~l 242 (466)
+..+++||+|+++|.+|+.. .+++++++++.++|+||+|++++|+++++++++.|+.++.++|++||+|++|++|+++|
T Consensus 210 ~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l 289 (529)
T CHL00093 210 MEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAML 289 (529)
T ss_pred ceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHH
Confidence 99999999999999999987 78999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHH
Q 012313 243 EDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRL 318 (466)
Q Consensus 243 e~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rl 318 (466)
+|||++|||++++++.|.+++++++++||+|++|+++++++++++ .++++.+..|+..++++++.+++ ++|+|||
T Consensus 290 ~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~ 368 (529)
T CHL00093 290 EDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERL 368 (529)
T ss_pred HHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 999999999999988888899999999999999999999999998 56789999999999999988776 9999999
Q ss_pred hhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcC-C-ChhHHHHHHHHHHHH
Q 012313 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT-T-NSDQKIGVQIVQNAL 396 (466)
Q Consensus 319 ~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~-~-~~~~q~~i~~~a~AL 396 (466)
+||+|+.+||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|..|++++. . ++++|+++++|++||
T Consensus 369 ~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL 448 (529)
T CHL00093 369 AKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAI 448 (529)
T ss_pred HHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875 4 899999999999999
Q ss_pred HHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 397 KMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 397 ~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.|||+||+|||+|+.++ .++++. +.++|||+.+|+++||++.|||||+.||.++|++|+++|++||+|
T Consensus 449 ~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (529)
T CHL00093 449 LAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTT 518 (529)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999764 468999999999999999999999999999999999999999986
No 8
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=5.9e-97 Score=789.07 Aligned_cols=454 Identities=38% Similarity=0.560 Sum_probs=434.7
Q ss_pred HHHhhccccccCc----cccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (466)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~ 79 (466)
..|||++|+++|| ++|++ +++|++||+++||||||+++||++||+++.+|++ |+||+.|++||++|.+.
T Consensus 51 G~tIlk~i~~~hp~~~~~akll------~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~ 124 (524)
T TIGR02348 51 GVTVAKEIELEDKFENMGAQLV------KEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEA 124 (524)
T ss_pred HHHHHHHccCCChhhHHHHHHH------HHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 4699999999999 67776 7999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccc
Q 012313 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (466)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~ 159 (466)
++++|+++++|+++.+++.++|++|+++++++++++++|+.+++.++.|.++.|++..|++++++|++|+++|.+|+|.+
T Consensus 125 ~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~ 204 (524)
T TIGR02348 125 AVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVT 204 (524)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCccccc
Confidence 99999999999988889999999999989999999999999999888889988888878899999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchh
Q 012313 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (466)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (466)
++++++..+++|+|+++|.+++++++++++++++.++|+||||++++|+++++++|..|+++|+++|++||+|+||+.|+
T Consensus 205 ~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~ 284 (524)
T TIGR02348 205 DAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRK 284 (524)
T ss_pred CccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012313 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (466)
Q Consensus 240 ~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (466)
++++|||++|||++++++.+++++++++++||+|++|++.++++++++++++++.+..|++.|+++++++.+ ++|+
T Consensus 285 ~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~ 364 (524)
T TIGR02348 285 AMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQ 364 (524)
T ss_pred hhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999987777799999999999999999999999999999999999999999999998766 9999
Q ss_pred HHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHH
Q 012313 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQN 394 (466)
Q Consensus 316 ~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~ 394 (466)
|||+||+|+.+||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|..|++ +.. ++++|+++++|++
T Consensus 365 eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~ 443 (524)
T TIGR02348 365 ERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKR 443 (524)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 544 8899999999999
Q ss_pred HHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 395 ALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 395 AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
||+.|||+||+|||+|+.++ ++|++. +.++|||+.+|++.||++.|||||+.||.++|++|+++|++||+|
T Consensus 444 AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 515 (524)
T TIGR02348 444 ALEAPLRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTT 515 (524)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999 999875 345999999999999999999999999999999999999999986
No 9
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.4e-96 Score=788.10 Aligned_cols=459 Identities=37% Similarity=0.548 Sum_probs=435.1
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++++. ..+.+++|++||+++||||||+|+|+++||+++.+|++ |+||..|++||++|.+.++++
T Consensus 53 G~tIlk~i~i~hp~~~~g--a~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~ 130 (544)
T PRK12850 53 GVTVAKEIELEDKFENMG--AQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDE 130 (544)
T ss_pred HHHHHHHhcCCChhhhHH--HHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 469999999999995554 44447999999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccccccc
Q 012313 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (466)
Q Consensus 84 L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~~~~~ 163 (466)
|+++++++++.++|.++|++|+++++.+++++++|+..++.++.|.++.+....+++++++|++|+++|.+|||.+++++
T Consensus 131 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~ 210 (544)
T PRK12850 131 LKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEK 210 (544)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCcccccccc
Confidence 99999999888889999999999899999999999999998888888876666678999999999999999999988888
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHH
Q 012313 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (466)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (466)
++.+++||+|+++|.++++.++++++++++.++|+||||++++|+++++++|+.|++++.+++++||+|+||+.|+++++
T Consensus 211 ~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le 290 (544)
T PRK12850 211 MRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLE 290 (544)
T ss_pred CeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 012313 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (466)
Q Consensus 244 ~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rl~ 319 (466)
|||++|||++++++.+.+++++++++||+|++|+++++++++++++++++.++.|+++|+++++++.+ ++|++||+
T Consensus 291 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 370 (544)
T PRK12850 291 DIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLA 370 (544)
T ss_pred HHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999987777789999999999999999999999999999999999999999999998766 99999999
Q ss_pred hhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 012313 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (466)
Q Consensus 320 ~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~i 399 (466)
||+|+.+||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|..|+++...++++|+++++|++||+.|
T Consensus 371 ~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~i 450 (544)
T PRK12850 371 KLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEP 450 (544)
T ss_pred HhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998434899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 400 p~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
||+||+|||+|+.++ .+|++.. .++|||+.+|++.||++.|||||+.||.++|++|+++|++||+|
T Consensus 451 p~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (544)
T PRK12850 451 LRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITT 517 (544)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999 9998753 57999999999999999999999999999999999999999986
No 10
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4e-96 Score=784.23 Aligned_cols=455 Identities=40% Similarity=0.578 Sum_probs=434.5
Q ss_pred HHHhhccccccCc----cccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (466)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~ 79 (466)
..|||++|+++|| +||++ +++|++||+++||||||+|+|+++||+++.+|++ |+||+.|++||++|.+.
T Consensus 53 G~tIlk~i~~~hp~~~~~akll------~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~ 126 (541)
T PRK12851 53 GVTIAKEIELEDKFENMGAQMV------REVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAA 126 (541)
T ss_pred HHHHHHHccCCCchhhHHHHHH------HHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5799999999999 66777 7999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccc
Q 012313 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (466)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~ 159 (466)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.+++.++.|.++.+....+++++++|++|++||.+|||.+
T Consensus 127 ~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~ 206 (541)
T PRK12851 127 VVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVT 206 (541)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCcccccccc
Confidence 99999999999988888999999999889999999999999999888888877666667899999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchh
Q 012313 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (466)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (466)
+++.++.++++|+|+++|.++++.+++.++++++.++|+||||++++|+++++++|..|+++|.++|++||+|+||+.|+
T Consensus 207 ~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~ 286 (541)
T PRK12851 207 DADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRK 286 (541)
T ss_pred CCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012313 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (466)
Q Consensus 240 ~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (466)
++++|||++|||++++++.+.+++++++++||+|++|++.+++|+++++++++++++.|+++|+++++++++ ++|+
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (541)
T PRK12851 287 AMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQ 366 (541)
T ss_pred hHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999987777789999999999999999999999999999999999999999999988665 9999
Q ss_pred HHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012313 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (466)
Q Consensus 316 ~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 395 (466)
+||+||+|+.+||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|..|++++..++++|+|+++|++|
T Consensus 367 ~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~A 446 (541)
T PRK12851 367 ERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRA 446 (541)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876688999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 396 L~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|+.|||+||+|||+|+.++ .+|++.. .++|||+.+|+++||++.|||||+.||.++|++|+++|++||+|
T Consensus 447 L~~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~i 517 (541)
T PRK12851 447 LEAPVRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTT 517 (541)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999 9998753 47999999999999999999999999999999999999999986
No 11
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=9e-96 Score=786.26 Aligned_cols=455 Identities=32% Similarity=0.501 Sum_probs=433.1
Q ss_pred HHHhhccccccCcc----ccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTT----GTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (466)
Q Consensus 5 ~~~il~~~~~~~p~----~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~ 79 (466)
..||+|+|+++||+ |+++ +++|++||+++||||||++|||++||+++.++++ |+||+.|++||++|.+.
T Consensus 108 G~TIlk~i~~~hP~~~~gakll------~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~ 181 (600)
T PLN03167 108 GVTVAKEVELEDPVENIGAKLV------RQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKA 181 (600)
T ss_pred HHHHHHHcccCCchhhHHHHHH------HHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 47999999999997 6666 7999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccc
Q 012313 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (466)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~ 159 (466)
++++|+++++|+++ ++|.++|++|+++++.|++++++|+.+++++|.|.+++|++..|++++++|++|+++|.+|||.+
T Consensus 182 ~~~~L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt 260 (600)
T PLN03167 182 LVKELKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVT 260 (600)
T ss_pred HHHHHHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCccccc
Confidence 99999999999975 67999999999988999999999999999888899999999988889999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchh
Q 012313 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (466)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (466)
+++.++.+++||+|+++|.+|++++++.++++.+.++|+||||++++|+++++++|+.|++++.++|++||+|+||+.++
T Consensus 261 ~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~ 340 (600)
T PLN03167 261 DSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKS 340 (600)
T ss_pred CcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012313 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (466)
Q Consensus 240 ~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (466)
++|+|||++|||++++++.+++++++++++||+|++|++.+++++++++.++++.++.|+.+++.++++.++ ++|+
T Consensus 341 ~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~ 420 (600)
T PLN03167 341 QYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLN 420 (600)
T ss_pred HHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHH
Confidence 999999999999999988777899999999999999999999999999988999999999999999877655 8999
Q ss_pred HHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCC-ChhHH-HHHHHHH
Q 012313 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQK-IGVQIVQ 393 (466)
Q Consensus 316 ~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~-~~~~q-~~i~~~a 393 (466)
+||++|+|+.++|+|||+|+++++|++|+++||+|++|+++++|+|||||++|+++|+.|++++.. ++++| +|+++|+
T Consensus 421 ~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~ 500 (600)
T PLN03167 421 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVK 500 (600)
T ss_pred HHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998764 56665 6699999
Q ss_pred HHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 394 NALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 394 ~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+||+.|||+||+|||+|+.++ .+|++++++++|||+.+|++.||+++|||||+.||+++|+.|+++|++||+|
T Consensus 501 ~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~i 574 (600)
T PLN03167 501 RALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTS 574 (600)
T ss_pred HHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9998656778999999999999999999999999999999999999999986
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-83 Score=653.47 Aligned_cols=454 Identities=39% Similarity=0.583 Sum_probs=439.5
Q ss_pred HhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHh
Q 012313 7 SLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLD 85 (466)
Q Consensus 7 ~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~L~ 85 (466)
|+.+++++.++...+- +.+.++++....++.||||||+++|++++..++.+-+. |.+|..|.+|+.+|.+.+++.|+
T Consensus 68 Tva~si~l~d~~~n~g--aklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~ 145 (550)
T KOG0356|consen 68 TVAKSIELKDKYENIG--AKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELK 145 (550)
T ss_pred eeeccccccchhhhhc--cHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHH
Confidence 6778999999999998 88889999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCccccccccce
Q 012313 86 CQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKE 165 (466)
Q Consensus 86 ~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~~~~~~~ 165 (466)
++++|+++.+++.+||++|+|+|..+++++.+|+.++|++|.|+++.|.+.+|++++++||.||+||+||||.+.++.++
T Consensus 146 k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~ 225 (550)
T KOG0356|consen 146 KMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQK 225 (550)
T ss_pred HhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHH
Q 012313 166 CVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDL 245 (466)
Q Consensus 166 ~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~l 245 (466)
++|++|++++++.+|+++++|.|.||...+..+||+|++++++.++|++|+.|++++.++++|||.|||||.|++.+.|+
T Consensus 226 ~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Di 305 (550)
T KOG0356|consen 226 VEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDI 305 (550)
T ss_pred hhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEeeCCCC-CCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHhh
Q 012313 246 AILTGGQVLTGGSG-MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAK 320 (466)
Q Consensus 246 a~~tG~~i~~~~~~-~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rl~~ 320 (466)
+.+||++++..+.+ ++++++++++||.|+++.++.+.+.++.+.+++++++.||++++..++..++ +++++|+++
T Consensus 306 ai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ 385 (550)
T KOG0356|consen 306 AILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAK 385 (550)
T ss_pred HHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Confidence 99999999999988 7999999999999999999999999999999999999999999988887766 899999999
Q ss_pred hcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHH
Q 012313 321 LSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMA 399 (466)
Q Consensus 321 l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~i 399 (466)
|+|++++|.|||.|+.|++|++.+++||+|++++|+++|+|||||+++++|+..|.+.... +..++.|++++.+||..|
T Consensus 386 ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P 465 (550)
T KOG0356|consen 386 LSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLP 465 (550)
T ss_pred hcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999988764 788999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhc
Q 012313 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNA 465 (466)
Q Consensus 400 p~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~ 465 (466)
.++||+|||.|+..+ .|++. .++|||..+++++||+++||+||++|.+.+|..|.++|+++++
T Consensus 466 ~~~IakNAGvdg~~vv~Kv~~---~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~t 529 (550)
T KOG0356|consen 466 AQTIAKNAGVDGSVVVEKVLN---DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTT 529 (550)
T ss_pred HHHHHHhcCCchHHHHHHHHh---hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhh
Confidence 999999999999999 99883 3899999999999999999999999999999999999999875
No 13
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.2e-80 Score=657.09 Aligned_cols=395 Identities=18% Similarity=0.246 Sum_probs=357.5
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+++++ + ++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 54 G~tIlk~i~~~hP~a~l~--~----~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~ 127 (484)
T cd03342 54 GNVLLSEMQIQHPTASMI--A----RAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKF 127 (484)
T ss_pred HHHHHHhccCcCHHHHHH--H----HHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 4 789999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC---CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCC------ceeee--cCCCccceeEeEeeE
Q 012313 84 LDCQARKIT---TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWEND------LITIF--DRKALYNELNFVKGM 146 (466)
Q Consensus 84 L~~~~~~v~---~~~~l~~va~ts~~~~------~~l~~li~~a~~~vg~~~------~I~i~--~g~~~~d~~~lv~G~ 146 (466)
|++++.+++ +.+.+.++|++|+++. +.|++++++|+.++++++ .|++. +|++. +++++++|+
T Consensus 128 L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~-~ds~~i~G~ 206 (484)
T cd03342 128 LESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSD-SDTKLIRGL 206 (484)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCCh-hhceEEeeE
Confidence 999999987 7788999999999863 789999999999998765 23333 56655 578999999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccCCHHH-HHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCc
Q 012313 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (466)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~-i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~ 225 (466)
+|+++|.+|+|+ ..++||+|+++|.+++.++. +... .-.+|||++++|++.++++|..|+
T Consensus 207 ~~~~~~~~~~m~-------~~~~n~~Ill~~~~le~~~~~~~~~------~~~~lvi~~~~I~~~al~~l~~~~------ 267 (484)
T cd03342 207 VLDHGARHPDMP-------KRVENAYILTCNVSLEYEKTEVNSG------FFYSVVINQKGIDPPSLDMLAKEG------ 267 (484)
T ss_pred EEecCCCCCCCC-------ccccCceEEEEeCCCCCCccccCcE------EEEEEEEeCCCccHHHHHHHHHCC------
Confidence 999999999883 36889999999999886643 2211 124699999999999999999874
Q ss_pred eEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHH
Q 012313 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQL 302 (466)
Q Consensus 226 i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v---~i~~~~~~~~~~~~~~~~i~~r~~~l 302 (466)
|++||+. ++++|+|||++|||+++++ ++++++++||+|++| ++++++|+++++++++
T Consensus 268 I~av~~~-----~~~~l~~ia~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------- 327 (484)
T cd03342 268 ILALRRA-----KRRNMERLTLACGGVAMNS-----VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP---------- 327 (484)
T ss_pred CeEEEeC-----CHHHHHHHHHHhCCEEecc-----cccCChhhCcccceEEEEEECCeEEEEEECCCCC----------
Confidence 9999987 5778999999999999996 899999999999999 5778899999998765
Q ss_pred HHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHhhcCC
Q 012313 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (466)
Q Consensus 303 ~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~ 381 (466)
+.|||+|||+|+.+++|++|+++||++++|+++++| +||||||+|+++|..|++++..
T Consensus 328 ---------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~ 386 (484)
T cd03342 328 ---------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKS 386 (484)
T ss_pred ---------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhc
Confidence 468999999999999999999999999999999999 9999999999999999999765
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccccCCccccccHHHHHHHH
Q 012313 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKA 456 (466)
Q Consensus 382 -~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A 456 (466)
++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|+++||++.|||||+.||+++|+.|
T Consensus 387 ~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A 466 (484)
T cd03342 387 VKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSA 466 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHH
Confidence 899999999999999999999999999999999 999752 456899999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 012313 457 TSMISLKNAI 466 (466)
Q Consensus 457 ~~~A~~iL~i 466 (466)
+++|++||||
T Consensus 467 ~e~a~~iL~I 476 (484)
T cd03342 467 TVIASQLLLV 476 (484)
T ss_pred HHHHHHHhhh
Confidence 9999999997
No 14
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-79 Score=657.38 Aligned_cols=401 Identities=18% Similarity=0.230 Sum_probs=357.5
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+++++ .++|++||+++||||||+++||++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 58 G~TIlk~i~i~hP~a~ll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (531)
T TIGR02347 58 GNVLLNEMQIQHPTASMI------ARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEF 131 (531)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 4889999999999999999999999999999999 999999999999999999999
Q ss_pred Hhhhcccc---CCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCCc------eee--ecCCCccceeEeEeeE
Q 012313 84 LDCQARKI---TTFEEIAQVGTTAANG------DGEIGELIAKVFEKGWENDL------ITI--FDRKALYNELNFVKGM 146 (466)
Q Consensus 84 L~~~~~~v---~~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~~~------I~i--~~g~~~~d~~~lv~G~ 146 (466)
|++++.++ .+.+.|.++|++++++ ++.|++++++|+..++.++. |++ ..|++. +++++++|+
T Consensus 132 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~-~ds~~v~Gi 210 (531)
T TIGR02347 132 LDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSA-TDTTLIRGL 210 (531)
T ss_pred HHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCc-cccEEEeeE
Confidence 99999764 4678899999999974 77899999999999987643 343 245554 579999999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccCCH-------------HH-----------HHHHHHHHHHcCC----
Q 012313 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------NV-----------IRQASLPCMMQGQ---- 198 (466)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~-------------~~-----------i~~~l~~i~~~~~---- 198 (466)
+|+++|.+|+|+ .+++||+|+++|.+++.. ++ +..+++++.+.|.
T Consensus 211 v~~~~~~~~~~~-------~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~ 283 (531)
T TIGR02347 211 VLDHGARHPDMP-------RRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCG 283 (531)
T ss_pred EEecCcCCCCCc-------eeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999874 378899999999876432 22 3445666776551
Q ss_pred ---C---EEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee
Q 012313 199 ---S---LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 272 (466)
Q Consensus 199 ---~---lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~ 272 (466)
+ ||+++++|++.++++|..+ +|+++|++ ++++|+|||++|||+++++ ++++++++||+
T Consensus 284 ~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~rv-----~~~~le~ia~~tGa~~i~~-----l~~~~~~~LG~ 347 (531)
T TIGR02347 284 KSPDKGFVVINQKGIDPPSLDLLAKE------GIMALRRA-----KRRNMERLTLACGGEALNS-----VEDLTPECLGW 347 (531)
T ss_pred cCCCccEEEEeCCCccHHHHHHHHHC------CceEEccC-----CHHHHHHHHHHhCCEEecc-----cccCCcccccc
Confidence 3 8889999999999999875 48999987 4667999999999999986 89999999999
Q ss_pred eeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHH
Q 012313 273 CKRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNAL 349 (466)
Q Consensus 273 ~~~v---~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal 349 (466)
|++| ++++++|++|++++++ +.|||+|||+|+.+++|++|+++||+
T Consensus 348 ~~~v~~~~ig~~~~~~i~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~l~DAl 396 (531)
T TIGR02347 348 AGLVYETSIGEEKYTFIEEVKNP-------------------------------KSCTILIKGPNDHTIKQIKDAVRDGL 396 (531)
T ss_pred ceEEEEEEECCeEEEEEEcCCCC-------------------------------CeEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999 6788899999988765 36899999999999999999999999
Q ss_pred HHHHHHHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCC
Q 012313 350 HAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSS 423 (466)
Q Consensus 350 ~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~ 423 (466)
|++|+++++| +|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.
T Consensus 397 ~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~ 476 (531)
T TIGR02347 397 RAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGE 476 (531)
T ss_pred HHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCC
Confidence 9999999998 9999999999999999999765 899999999999999999999999999999999 99876 2346
Q ss_pred CeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 424 DLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 424 ~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
++|||+.+|++.||++.|||||+.||+++|++|+++|++||||
T Consensus 477 ~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrI 519 (531)
T TIGR02347 477 VVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLV 519 (531)
T ss_pred ceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 7999999999999999999999999999999999999999997
No 15
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.4e-79 Score=654.27 Aligned_cols=401 Identities=19% Similarity=0.276 Sum_probs=365.9
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+|+|+++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 57 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03343 57 GATILKEMDIEHPAAKML------VEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALEL 130 (517)
T ss_pred HHHHHHHccCcCHHHHHH------HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 579999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCCc---------eee--ecCCCccceeEeEe
Q 012313 84 LDCQARKIT--TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWENDL---------ITI--FDRKALYNELNFVK 144 (466)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~~------~~l~~li~~a~~~vg~~~~---------I~i--~~g~~~~d~~~lv~ 144 (466)
|++++++++ +.+.+.++|++|++++ +.|++++++|+.+++.++. |++ .+|++.. ++++++
T Consensus 131 L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~-ds~lv~ 209 (517)
T cd03343 131 LDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVD-DTELIR 209 (517)
T ss_pred HHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHH-Hcceee
Confidence 999999986 6788999999999864 7899999999999976543 777 4787775 689999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHHHHHH-----------HHHHHcCCCE
Q 012313 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQAS-----------LPCMMQGQSL 200 (466)
Q Consensus 145 G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i~~~l-----------~~i~~~~~~l 200 (466)
|++|+++|.+|+|+ ..++||+|++++.+ +++++++.+++ +++.+.|+||
T Consensus 210 G~v~~~~~~~~~m~-------~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 282 (517)
T cd03343 210 GIVIDKEVVHPGMP-------KRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANV 282 (517)
T ss_pred eEEEeccCCCCCCc-------cccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999874 36889999999988 57777766654 4788999999
Q ss_pred EEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe-
Q 012313 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT- 279 (466)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~- 279 (466)
||++++|+++++++|..+ ++++|+++ ++++|+|||++|||+++++ ++++++++||+|++|++.
T Consensus 283 vi~~~~I~~~al~~l~~~------gI~~v~~v-----~~~~l~~Ia~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 346 (517)
T cd03343 283 VFCQKGIDDLAQHYLAKA------GILAVRRV-----KKSDMEKLARATGAKIVTN-----IDDLTPEDLGEAELVEERK 346 (517)
T ss_pred EEeCCCccHHHHHHHhHC------CcEEEEeC-----CHHHHHHHHHHhCCEEecc-----hhhCChhhCCccceEEEEE
Confidence 999999999999998753 48899987 5778999999999999996 888999999999999865
Q ss_pred --cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHH
Q 012313 280 --MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (466)
Q Consensus 280 --~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~ 357 (466)
+++|++++++++++ .+||+|||+|+.+++|++|+++||++++|++++
T Consensus 347 ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~ 395 (517)
T cd03343 347 VGDDKMVFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERALEDALRVVADALE 395 (517)
T ss_pred ECCeEEEEEEcCCCCc-------------------------------eEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77899999887653 489999999999999999999999999999999
Q ss_pred cC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCC
Q 012313 358 EG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR 431 (466)
Q Consensus 358 ~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~ 431 (466)
+| ||||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+.+
T Consensus 396 ~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~ 475 (517)
T cd03343 396 DGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYT 475 (517)
T ss_pred CCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCC
Confidence 99 9999999999999999998765 899999999999999999999999999999999 99974 355789999999
Q ss_pred CccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 432 GNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 432 ~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|++.||++.|||||+.||+++|+.|+++|++||+|
T Consensus 476 g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 510 (517)
T cd03343 476 GEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRI 510 (517)
T ss_pred CCccchhhcCceecHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999986
No 16
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=7.7e-79 Score=651.27 Aligned_cols=401 Identities=19% Similarity=0.264 Sum_probs=364.1
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+++|+++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02339 58 GATILKEMDIEHPAAKML------VEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEI 131 (519)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccCC--HHHHHHHHHHhcCCC-------hhHHHHHHHHHHhhcc---CCc-------eee--ecCCCccceeEe
Q 012313 84 LDCQARKITT--FEEIAQVGTTAANGD-------GEIGELIAKVFEKGWE---NDL-------ITI--FDRKALYNELNF 142 (466)
Q Consensus 84 L~~~~~~v~~--~~~l~~va~ts~~~~-------~~l~~li~~a~~~vg~---~~~-------I~i--~~g~~~~d~~~l 142 (466)
|++++++++. .+.|.++|+|+++++ +.|++++++|+.+++. ++. |++ .+|++.. ++++
T Consensus 132 L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~-ds~l 210 (519)
T TIGR02339 132 IDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSID-DTEL 210 (519)
T ss_pred HHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChh-ccee
Confidence 9999999863 578999999999753 7899999999999974 453 445 4677775 6899
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHHHHHHH-----------HHHHcCC
Q 012313 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQASL-----------PCMMQGQ 198 (466)
Q Consensus 143 v~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i~~~l~-----------~i~~~~~ 198 (466)
++|++|+++|.+|.| +..++||+|++++.+ +++++++.++++ ++++.|+
T Consensus 211 v~G~vi~~~~~~~~m-------~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~ 283 (519)
T TIGR02339 211 VEGIVVDKEPVHPGM-------PKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGA 283 (519)
T ss_pred EeeEEEecCCCCCCC-------ccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999865 347899999999987 677888777766 7899999
Q ss_pred CEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE
Q 012313 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA 278 (466)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i 278 (466)
|||+++++|++.++++|..+ +|++|+++ ++++|+|||++|||+++++ ++++++++||+|++|++
T Consensus 284 ~lvi~~~~I~~~al~~L~~~------gI~~v~~v-----~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~ 347 (519)
T TIGR02339 284 NVVFCQKGIDDLAQHYLAKA------GILAVRRV-----KKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEE 347 (519)
T ss_pred cEEEECCCccHHHHHHHHHC------CCEEEecC-----CHHHHHHHHHHhCCEEeCc-----hhhCChhhccCCceEEE
Confidence 99999999999999998753 48889987 5778999999999999996 78889999999999986
Q ss_pred ec---ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHH
Q 012313 279 TM---DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (466)
Q Consensus 279 ~~---~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a 355 (466)
.+ ++|+++++++++. .+||+|||+|+.+++|.+|+++||++++|++
T Consensus 348 ~~ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 348 RKVGDDKMTFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred EEECCeEEEEEEcCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 7899999887653 5899999999999999999999999999999
Q ss_pred HHcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeC
Q 012313 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNP 429 (466)
Q Consensus 356 ~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~ 429 (466)
+++| ||||||++|+++|+.|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+
T Consensus 397 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~ 476 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINV 476 (519)
T ss_pred hcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEc
Confidence 9999 9999999999999999998765 889999999999999999999999999999999 99975 3457899999
Q ss_pred CCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 430 ARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 430 ~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
.+|++.||++.|||||+.||+++|+.|+++|++||+|
T Consensus 477 ~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (519)
T TIGR02339 477 FTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRI 513 (519)
T ss_pred CCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999986
No 17
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.9e-79 Score=651.28 Aligned_cols=406 Identities=17% Similarity=0.206 Sum_probs=360.6
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+++|+++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 50 G~tIlk~i~~~hP~akll------~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (527)
T cd03335 50 GATILKLLEVEHPAAKIL------VELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKY 123 (527)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred Hhh-hccccC--CHHHHHHHHHHhcC-----C-ChhHHHHHHHHHHhhcc---CCc-------eee--ecCCCccceeEe
Q 012313 84 LDC-QARKIT--TFEEIAQVGTTAAN-----G-DGEIGELIAKVFEKGWE---NDL-------ITI--FDRKALYNELNF 142 (466)
Q Consensus 84 L~~-~~~~v~--~~~~l~~va~ts~~-----~-~~~l~~li~~a~~~vg~---~~~-------I~i--~~g~~~~d~~~l 142 (466)
|++ +++|++ +.+.|.++|+|+++ + .+.|++++++|+..++. ++. |++ ..|++.. ++++
T Consensus 124 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~-~s~l 202 (527)
T cd03335 124 IKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAK-ESYL 202 (527)
T ss_pred HHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChh-hcce
Confidence 996 899987 77889999999987 2 47899999999999852 232 333 3677765 7899
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCC-------------HHH-----------HHHHHHHHHHcCC
Q 012313 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNV-----------IRQASLPCMMQGQ 198 (466)
Q Consensus 143 v~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~-------------~~~-----------i~~~l~~i~~~~~ 198 (466)
++|++|+++|.+|.| +..++||+|++++.+++. +++ +.++++++.+.|+
T Consensus 203 i~Givi~~~~~~~~m-------~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~ 275 (527)
T cd03335 203 VNGYALNCTRASQGM-------PTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGA 275 (527)
T ss_pred eeeEEEecccCCCCC-------cccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999855 347899999999987653 222 3466788889999
Q ss_pred CEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCC-CcCCCCCCCceeeeEEE
Q 012313 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (466)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~-~~~~~~~~~lG~~~~v~ 277 (466)
||||++++|++.++++|..+ +|+++++. ++++|+|||++|||+++++..++ ..+++++++||+|++|+
T Consensus 276 ~lvi~~k~I~d~al~~L~~~------~I~~v~~v-----~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 344 (527)
T cd03335 276 NVVLTTGGIDDMCLKYFVEA------GAMAVRRV-----KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVV 344 (527)
T ss_pred CEEEeCCCCcHHHHHHHHHC------CcEEEEeC-----CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEE
Confidence 99999999999999999975 48999987 57789999999999999985443 22456677999999998
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHH
Q 012313 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (466)
Q Consensus 278 ---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~ 354 (466)
+++++|++|++++++ +.|||+|||+|+++++|++|+++||+|++++
T Consensus 345 ~~~ig~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~ 393 (527)
T cd03335 345 QERIGDDELILIKGTKKR-------------------------------SSASIILRGANDFMLDEMERSLHDALCVVKR 393 (527)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 778899999988754 4799999999999999999999999999999
Q ss_pred HHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 012313 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (466)
Q Consensus 355 a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~------- 421 (466)
++++| +|||||++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 394 ~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~ 473 (527)
T cd03335 394 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKK 473 (527)
T ss_pred HhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 99999 9999999999999999998765 889999999999999999999999999999999 998762 2
Q ss_pred -CCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 422 -SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 422 -~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
++++|||+.+|++.||++.|||||+.||.++|+.|+|+|++||||
T Consensus 474 ~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrI 519 (527)
T cd03335 474 HLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRI 519 (527)
T ss_pred cCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 457999999999999999999999999999999999999999997
No 18
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.9e-79 Score=650.32 Aligned_cols=407 Identities=18% Similarity=0.241 Sum_probs=358.1
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+|+|+++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 51 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 124 (517)
T TIGR02342 51 GATILKQMGVIHPAAKML------VELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKI 124 (517)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---CCc-----eeee--cCCCccceeEeEee
Q 012313 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---NDL-----ITIF--DRKALYNELNFVKG 145 (466)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~---~~~-----I~i~--~g~~~~d~~~lv~G 145 (466)
|+++++|++ +.+.|.++|+||+++ .+.|++++++|+..++. ++. |++. .|++. +++++++|
T Consensus 125 L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~-~ds~li~G 203 (517)
T TIGR02342 125 LDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTI-DDTELIEG 203 (517)
T ss_pred HHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCCh-hhcEEEee
Confidence 999999986 678899999999973 34679999999999975 232 4443 45554 57999999
Q ss_pred EEEeccccCC-ccccccccceeeecCceEEEecccc-------------CCH-----------HHHHHHHHHHHHcCCCE
Q 012313 146 MKLEWGLKSP-YFFTHKNKKECVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSL 200 (466)
Q Consensus 146 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~Il~~d~~i-------------~~~-----------~~i~~~l~~i~~~~~~l 200 (466)
++|+++|.++ .|+ ..+.+|+|++++.++ .++ +++.++++++.+.|+||
T Consensus 204 ivl~k~~~~~~~mp-------k~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~l 276 (517)
T TIGR02342 204 LVFTQKASRSAGGP-------TRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNV 276 (517)
T ss_pred EEEeccccccCCCC-------ccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 9999999883 332 245677777666532 222 35677899999999999
Q ss_pred EEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE-E-
Q 012313 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI-A- 278 (466)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~-i- 278 (466)
||++++|++++++.++.|.+.+ .+|++|++. ++++|+|||++|||+++++ ++++++++||+|+.|+ +
T Consensus 277 vi~~~~I~~~~l~~l~~~~l~~-~~I~av~~v-----~~~~LerIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 345 (517)
T TIGR02342 277 LLIQKSILRDAVNDLALHFLAK-MKIMVVKDI-----EREEVEFICKTIGCKPIAS-----IDHFTADKLGSAELVEEVT 345 (517)
T ss_pred EEECCCcccccccHHHHHHHhh-CCceEEecC-----CHHHHHHHHHHHCCEEEcc-----hhhcCcccCcCCceEEEEE
Confidence 9999999888888888887777 789999977 6778999999999999996 8889999999999997 3
Q ss_pred -ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHH
Q 012313 279 -TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (466)
Q Consensus 279 -~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~ 357 (466)
+++.++++.+++++ |+.|||+|||+|+++++|++|+++||++++|++++
T Consensus 346 ~~~~~~~~i~~~~~~------------------------------~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~ 395 (517)
T TIGR02342 346 TDGGKIIKITGIQNA------------------------------GKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVK 395 (517)
T ss_pred ECCeEEEEEEccCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567778777542 35799999999999999999999999999999999
Q ss_pred c-CCcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCC
Q 012313 358 E-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR 431 (466)
Q Consensus 358 ~-gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~ 431 (466)
+ ++|||||++|+++|+.|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+.+
T Consensus 396 ~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~ 475 (517)
T TIGR02342 396 KRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRK 475 (517)
T ss_pred CCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCC
Confidence 8 59999999999999999998765 899999999999999999999999999999999 99976 256789999999
Q ss_pred CccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 432 GNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 432 ~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|+++||++.|||||+.||+++|++|+++|++||||
T Consensus 476 g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~i 510 (517)
T TIGR02342 476 GGITDMLEEEVLQPLLVTTSAVTLASETVRMILKI 510 (517)
T ss_pred CCccchhhccceEcHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999997
No 19
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.5e-78 Score=648.80 Aligned_cols=408 Identities=18% Similarity=0.215 Sum_probs=360.6
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+++++ +++|++||+++||||||+|+|+++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 50 G~tIlk~l~~~hp~a~ll------~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (515)
T cd03338 50 GATILKQMSVLHPAAKML------VELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEI 123 (515)
T ss_pred HHHHHHhCcCcCHHHHHH------HHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCCc----------eeeecCCCccceeEeEee
Q 012313 84 LDCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWENDL----------ITIFDRKALYNELNFVKG 145 (466)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~------~~~~l~~li~~a~~~vg~~~~----------I~i~~g~~~~d~~~lv~G 145 (466)
|++++.+++ +.+.|.++|++|++ +++.+++++++|+.+++.++. |....|++..| +++++|
T Consensus 124 L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~d-s~lv~G 202 (515)
T cd03338 124 LDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIED-TELVDG 202 (515)
T ss_pred HHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhh-ceeeee
Confidence 999999986 67889999999998 457899999999999987652 44457877764 699999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEecccc-------------CCH-----------HHHHHHHHHHHHcCCCEE
Q 012313 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSLL 201 (466)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i-------------~~~-----------~~i~~~l~~i~~~~~~lv 201 (466)
++|+++|.+|++. | ..+.+|+++++++++ +++ +++.++++.+.+.|+|||
T Consensus 203 iv~~k~~~~~~~~--p----~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lv 276 (515)
T cd03338 203 LVFTQKASKKAGG--P----TRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVL 276 (515)
T ss_pred EEEeccccCcCCC--C----ccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999987531 1 134455555544322 222 457788999999999999
Q ss_pred EEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe--
Q 012313 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT-- 279 (466)
Q Consensus 202 Ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~-- 279 (466)
|++++|++++++.++.|.+.+ .+|++|++. ++++|+|||++|||+++++ ++++++++||+|+.|++.
T Consensus 277 i~~~~i~~~~v~~l~~~~l~~-~~I~av~~~-----~~~~LerIa~~tGa~ii~s-----l~~l~~~~LG~~~~v~~~~~ 345 (515)
T cd03338 277 LIQKSILRDAVSDLALHFLAK-LKIMVVKDI-----EREEIEFICKTIGCKPVAS-----IDHFTEDKLGSADLVEEVSL 345 (515)
T ss_pred EECCCcccccccHHHHHHHHH-CCceEEecC-----CHHHHHHHHHHHCCEEecc-----cccCCHhhCCCCceEEEEEE
Confidence 999999888888788777775 789999977 6778999999999999996 888999999999999864
Q ss_pred -cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc
Q 012313 280 -MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (466)
Q Consensus 280 -~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~ 358 (466)
+++++++.++.++ ++.|||+|||+|+.+++|++|+++||+|++|+++++
T Consensus 346 g~~~~~~i~~~~~~------------------------------~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~ 395 (515)
T cd03338 346 GDGKIVKITGVKNP------------------------------GKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKK 395 (515)
T ss_pred CCeEEEEEEecCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4568888887541 357999999999999999999999999999999999
Q ss_pred C-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 012313 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (466)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~~ 432 (466)
| +|||||++|+++|+.|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|
T Consensus 396 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g 475 (515)
T cd03338 396 RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKG 475 (515)
T ss_pred CCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCC
Confidence 9 9999999999999999998765 889999999999999999999999999999999 999762 567899999999
Q ss_pred ccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 433 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 433 ~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
++.||++.|||||+.||+++|+.|+++|++||||
T Consensus 476 ~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~I 509 (515)
T cd03338 476 AITNILEENVVQPLLVSTSAITLATETVRMILKI 509 (515)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999997
No 20
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.8e-78 Score=646.83 Aligned_cols=406 Identities=17% Similarity=0.207 Sum_probs=361.3
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..||+++|+++||++|++ +++|++||+++||||||+++|+++||+++.+|++ |+||+.|++||+.|.+.++++
T Consensus 54 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 127 (536)
T TIGR02340 54 GATILKLLEVEHPAAKIL------VELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKY 127 (536)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred Hhhh-ccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhc---cCCc-------eee--ecCCCccceeEe
Q 012313 84 LDCQ-ARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNF 142 (466)
Q Consensus 84 L~~~-~~~v~--~~~~l~~va~ts~~------~~~~l~~li~~a~~~vg---~~~~-------I~i--~~g~~~~d~~~l 142 (466)
|+++ ++|++ +.+++.++|+++++ +++.|++++++|+..++ .+|. |++ .+|++. +++++
T Consensus 128 L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~-~~s~~ 206 (536)
T TIGR02340 128 IKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSA-RESYL 206 (536)
T ss_pred HHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCc-cccEE
Confidence 9985 88887 67889999999987 46889999999999986 2332 333 467777 67999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCCH-------------H-----------HHHHHHHHHHHcCC
Q 012313 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------N-----------VIRQASLPCMMQGQ 198 (466)
Q Consensus 143 v~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~-------------~-----------~i~~~l~~i~~~~~ 198 (466)
++|++|+++|.+|.| +..+++|+|++++.+++.. + .+.+.++.+.+.|.
T Consensus 207 i~Gi~i~~~~~~~~m-------~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~ 279 (536)
T TIGR02340 207 VKGYALNCTRASQQM-------PKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGA 279 (536)
T ss_pred EEEEEEecccCCCCC-------cceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999998855 3478999999999876432 2 23456777888999
Q ss_pred CEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCC-CcCCCCCCCceeeeEEE
Q 012313 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (466)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~-~~~~~~~~~lG~~~~v~ 277 (466)
+||+++++|++.++++|..++ +++++++ ++++|+|||++|||+++++..++ ..+++++++||+|+.|+
T Consensus 280 ~lvi~~k~I~~~a~~~L~k~~------I~~i~rv-----~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 348 (536)
T TIGR02340 280 NVVLTTGGIDDMCLKYFVEAG------AMGVRRC-----KKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVV 348 (536)
T ss_pred CEEEeCCCCcHHHHHHHHHCC------cEEEecC-----CHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEE
Confidence 999999999999999998754 8999987 47779999999999999986444 33557788899999998
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHH
Q 012313 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (466)
Q Consensus 278 ---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~ 354 (466)
+++++|++|++++++ ..|||+|||+|+.+++|++|+++||+|++|+
T Consensus 349 ~~~ig~~~~~~i~~~~~~-------------------------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~ 397 (536)
T TIGR02340 349 EERIADDECILIKGTKGR-------------------------------KSASIILRGANDFMLDEMERSLHDALCVVKR 397 (536)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 788899999988765 3689999999999999999999999999999
Q ss_pred HHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 012313 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (466)
Q Consensus 355 a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~------- 421 (466)
++++| ||||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 398 ~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~ 477 (536)
T TIGR02340 398 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKK 477 (536)
T ss_pred HhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccc
Confidence 99999 9999999999999999988765 889999999999999999999999999999999 988761 1
Q ss_pred -CCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 422 -SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 422 -~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.++|||+.+|++.||++.|||||+.||.++|+.|+++|++||||
T Consensus 478 ~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~I 523 (536)
T TIGR02340 478 HLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRI 523 (536)
T ss_pred cCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 347999999999999999999999999999999999999999997
No 21
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.5e-78 Score=646.04 Aligned_cols=401 Identities=19% Similarity=0.219 Sum_probs=355.4
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+++|+++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 65 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 138 (526)
T cd03339 65 GATILEKMDVDHQIAKLL------VELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEH 138 (526)
T ss_pred HHHHHHHhcccCHHHHHH------HHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-------Cceeee--cCCCccceeEeEe
Q 012313 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-------DLITIF--DRKALYNELNFVK 144 (466)
Q Consensus 84 L~~~~~~v~----~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~-------~~I~i~--~g~~~~d~~~lv~ 144 (466)
|+++++|++ +.+.|.++|++++++ .+.|++++++|+..+... ..|+++ +|++.. ++++++
T Consensus 139 L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~-dS~~v~ 217 (526)
T cd03339 139 LEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLE-DTKLVK 217 (526)
T ss_pred HHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHH-Hcceee
Confidence 999999885 467899999999974 357899999999877431 134554 687775 589999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEecc-----------c--cCCHHH-----------HHHHHHHHHHcCCCE
Q 012313 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-----------K--ISNSNV-----------IRQASLPCMMQGQSL 200 (466)
Q Consensus 145 G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~-----------~--i~~~~~-----------i~~~l~~i~~~~~~l 200 (466)
|++|+++|.+|+|++ .++||+|++++. + ++++++ +.++++++.+.|+||
T Consensus 218 Givi~~~~~~~~m~~-------~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 290 (526)
T cd03339 218 GIVIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANL 290 (526)
T ss_pred eEEEecccCCCCCCc-------eecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 999999999999865 344566655553 2 566655 677899999999999
Q ss_pred EEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE--
Q 012313 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-- 278 (466)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i-- 278 (466)
||++++|++.++++|..|+ +.+||+++ +++|+|||++|||+++++ ++++++++||+|+.|+.
T Consensus 291 vi~~~~I~~~al~~L~~~~------I~av~~v~-----~~~LerIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ 354 (526)
T cd03339 291 VICQWGFDDEANHLLLQNG------LPAVRWVG-----GVEIELIAIATGGRIVPR-----FEDLSPEKLGKAGLVREIS 354 (526)
T ss_pred EEeCCCCCHHHHHHHHHCC------CEEEEeCC-----HHHHHHHHHHhCCEEecc-----hhhCChhhcccCceEEEEE
Confidence 9999999999999999765 78999974 556999999999999996 89999999999999873
Q ss_pred -e--cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHH
Q 012313 279 -T--MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (466)
Q Consensus 279 -~--~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a 355 (466)
+ .++++|+++|+++ +.+||+|||+|+.+++|++|+++||++++|++
T Consensus 355 ig~~~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~ 403 (526)
T cd03339 355 FGTTKDKMLVIEGCPNS-------------------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNL 403 (526)
T ss_pred ecCCCcEEEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3578999988765 46899999999999999999999999999999
Q ss_pred HHcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh----cCCCCeeEe
Q 012313 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE----QDSSDLGYN 428 (466)
Q Consensus 356 ~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~----~~~~~~G~d 428 (466)
+++| +|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|+. .++.++|||
T Consensus 404 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 483 (526)
T cd03339 404 IRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGID 483 (526)
T ss_pred hhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeee
Confidence 9998 9999999999999999998765 889999999999999999999999999999999 99874 235679999
Q ss_pred CCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 429 PARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 429 ~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.+|++.||++.|||||+.||+++|+.|+++|++||||
T Consensus 484 ~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 521 (526)
T cd03339 484 CLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKI 521 (526)
T ss_pred cCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999997
No 22
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-80 Score=652.34 Aligned_cols=432 Identities=31% Similarity=0.434 Sum_probs=356.3
Q ss_pred HHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHH
Q 012313 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (466)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~L 84 (466)
.||||+|+++||.||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|.+.++++|
T Consensus 54 ~tIlkeielehp~akll------~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l 127 (524)
T COG0459 54 VTILKEIELEHPGAKLL------VEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEEL 127 (524)
T ss_pred ceehhhhhccCchhHHH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999 6889999999999999999999999999999999 9999999999999999999999
Q ss_pred hhhccccCCHH-----HHHHHHHHhcCCChhHHHHHHHHHHhhcc-----CCceeeecCCCccceeEeEeeEEEeccccC
Q 012313 85 DCQARKITTFE-----EIAQVGTTAANGDGEIGELIAKVFEKGWE-----NDLITIFDRKALYNELNFVKGMKLEWGLKS 154 (466)
Q Consensus 85 ~~~~~~v~~~~-----~l~~va~ts~~~~~~l~~li~~a~~~vg~-----~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~ 154 (466)
+++++++++.+ ...++++.++++++.+++++++|+.+++. ++.+.++..++..+++++++||+||+||.+
T Consensus 128 ~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s 207 (524)
T COG0459 128 KEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLS 207 (524)
T ss_pred HHhhccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccC
Confidence 99999998554 44445555555578999999999999998 777777877777788999999999999999
Q ss_pred CccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCc
Q 012313 155 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 234 (466)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~ 234 (466)
|||.++ .+++||+|+++|.+|+..+..+| ++...+.+.||++++++..++++..++.|.+++..++++|+.|||
T Consensus 208 ~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi 281 (524)
T COG0459 208 PYFMPD-----KRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI 281 (524)
T ss_pred CCCCCc-----cccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 998653 47889999999999887776666 666666666777777777777777777777777777777777777
Q ss_pred ccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhc-ch--
Q 012313 235 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLS-TS-- 311 (466)
Q Consensus 235 g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~-~s-- 311 (466)
||.++..|+|++++||.++.+++.+ .....+|.|..+...++.+....|.+. ..++++. .+
T Consensus 282 ~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~ 345 (524)
T COG0459 282 DDLAKAYLEDIAILTGRRVKKEDLG-----ERLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDY 345 (524)
T ss_pred cHHHHHHHHhhcceecceecchhhH-----HHHHHccCceEEeecccCceeecCccc-----------cceEEEeeccch
Confidence 7777766776666666666665422 133344555555444444333333210 0111111 11
Q ss_pred --HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHhhc-CCCh-hHH
Q 012313 312 --DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQ-TTNS-DQK 386 (466)
Q Consensus 312 --~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~-~~~~-~~q 386 (466)
+++++|.++ .|+.|||+|||+|+++++|++|+++||||++|+++++| +|||||++|++++.+|+++. ..++ ++|
T Consensus 346 ~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~ 424 (524)
T COG0459 346 DMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQ 424 (524)
T ss_pred hhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHH
Confidence 566677777 78999999999999999999999999999999999999 99999999999999999983 3355 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCC-CCeeEeCCCCcc-ccccccCCccccccHHHHHHHHHHHHHHH
Q 012313 387 IGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDS-SDLGYNPARGNY-VDMFKCGDVDPLKHVPSEFAKATSMISLK 463 (466)
Q Consensus 387 ~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~-~~~G~d~~~~~~-~d~~~~gI~dp~~vk~~al~~A~~~A~~i 463 (466)
+|+++|++||+.|||+||+|||+||.++ .+|++..+ +++|||+.+|++ .||++.|||||+.||+++|++|+|+|+++
T Consensus 425 ~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~ll 504 (524)
T COG0459 425 LGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLL 504 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 99998654 459999999999 88999999999999999999999999999
Q ss_pred hcC
Q 012313 464 NAI 466 (466)
Q Consensus 464 L~i 466 (466)
|+|
T Consensus 505 L~~ 507 (524)
T COG0459 505 LTI 507 (524)
T ss_pred HHH
Confidence 985
No 23
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.7e-78 Score=644.02 Aligned_cols=401 Identities=19% Similarity=0.210 Sum_probs=354.2
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+++|+++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 69 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 142 (532)
T TIGR02343 69 GATILSQMDVDNPIAKLM------VELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEH 142 (532)
T ss_pred HHHHHHHccCCCHHHHHH------HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-------Cceeee--cCCCccceeEeEe
Q 012313 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-------DLITIF--DRKALYNELNFVK 144 (466)
Q Consensus 84 L~~~~~~v~----~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~-------~~I~i~--~g~~~~d~~~lv~ 144 (466)
|+++++++. +.+.|.++|++++++ .+.|++++++|+..+... ..|++. +|++..| +++++
T Consensus 143 L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~d-s~~v~ 221 (532)
T TIGR02343 143 LEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLED-TKLIK 221 (532)
T ss_pred HHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCccc-ceeEe
Confidence 999999874 357899999999874 346888889998877431 124443 6877764 69999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEecc-----------c--cCCHHHH-----------HHHHHHHHHcCCCE
Q 012313 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-----------K--ISNSNVI-----------RQASLPCMMQGQSL 200 (466)
Q Consensus 145 G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~-----------~--i~~~~~i-----------~~~l~~i~~~~~~l 200 (466)
|++|+++|.+|+|++ .+++|+|++++. + +++++++ .++++++.+.|+||
T Consensus 222 Gi~i~~~~~~~~m~~-------~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~l 294 (532)
T TIGR02343 222 GIIIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANI 294 (532)
T ss_pred eEEEecCcCCCCCCe-------eecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 999999999999865 345566655553 3 5666655 77899999999999
Q ss_pred EEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE--
Q 012313 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-- 278 (466)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i-- 278 (466)
||++++|++.++++|..|+ +.+||+++ +++|+|||++|||+++++ ++++++++||+|++|+.
T Consensus 295 vi~~~~I~~~al~~L~~~~------i~~v~~~~-----~~~l~~Ia~~tGa~~i~~-----l~~~~~~~LG~a~~v~~~~ 358 (532)
T TIGR02343 295 VICQWGFDDEANHLLLQND------LPAVRWVG-----GHELELIAIATGGRIVPR-----FEELSEDKLGKAGLVREIS 358 (532)
T ss_pred EEeCCCccHHHHHHHHHCC------cEEEEcCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCcccceEEEEE
Confidence 9999999999999999874 77899884 556999999999999996 88999999999999873
Q ss_pred -ec--ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHH
Q 012313 279 -TM--DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (466)
Q Consensus 279 -~~--~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a 355 (466)
+. ++++++++|++++ .+||+|||+|+++++|++|+++||++++|++
T Consensus 359 ig~~~~~~~~i~~~~~~~-------------------------------~~TIllrG~t~~~l~E~er~l~DAl~~v~~~ 407 (532)
T TIGR02343 359 FGTTKDRMLVIEQCKNSK-------------------------------AVTIFIRGGNKMIIEEAKRSIHDALCVVRNL 407 (532)
T ss_pred ecCCcceEEEEECCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 4789999887653 5899999999999999999999999999999
Q ss_pred HHc-CCcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh----cCCCCeeEe
Q 012313 356 KEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE----QDSSDLGYN 428 (466)
Q Consensus 356 ~~~-gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~----~~~~~~G~d 428 (466)
+++ ++|||||++|+++|+.|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||
T Consensus 408 i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 487 (532)
T TIGR02343 408 IKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVD 487 (532)
T ss_pred HhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCee
Confidence 998 59999999999999999998765 889999999999999999999999999999999 98875 125679999
Q ss_pred CCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 429 PARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 429 ~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.+|++.||++.|||||+.||.++|+.|+|+|++||+|
T Consensus 488 ~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~i 525 (532)
T TIGR02343 488 CLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKI 525 (532)
T ss_pred CCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999986
No 24
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-77 Score=641.26 Aligned_cols=404 Identities=16% Similarity=0.173 Sum_probs=363.8
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+|+|+++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 58 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (522)
T cd03340 58 GATILKLLDIVHPAAKTL------VDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEK 131 (522)
T ss_pred HHHHHHHccccCHHHHHH------HHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccCC------HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCC---ceeee--cCCCccceeEeEeeE
Q 012313 84 LDCQARKITT------FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND---LITIF--DRKALYNELNFVKGM 146 (466)
Q Consensus 84 L~~~~~~v~~------~~~l~~va~ts~~------~~~~l~~li~~a~~~vg~~~---~I~i~--~g~~~~d~~~lv~G~ 146 (466)
|+++++++++ .+.|.++|+++++ +++.|++++++|+.++++++ .|++. +|++.. ++++++|+
T Consensus 132 L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~-ds~lv~Gi 210 (522)
T cd03340 132 IKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLE-DSQLVNGV 210 (522)
T ss_pred HHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChh-hceeeeeE
Confidence 9999998864 4669999999987 36789999999999998765 44443 677765 58899999
Q ss_pred EEeccccCCccccccccceeeecCceEEEecccc-------------CCHHH-----------HHHHHHHHHHcCCCEEE
Q 012313 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNSNV-----------IRQASLPCMMQGQSLLV 202 (466)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i-------------~~~~~-----------i~~~l~~i~~~~~~lvI 202 (466)
+|+++|.+|+|...| ..++||+|++++.++ +++.+ +.+.++.+.+.|.++|+
T Consensus 211 v~~k~~~~~~~~~~~----~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl 286 (522)
T cd03340 211 AFKKTFSYAGFEQQP----KKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVL 286 (522)
T ss_pred EEecccCccccccCC----ccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999876544 368999999999863 44443 55667888899999999
Q ss_pred EecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 012313 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (466)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~---i~ 279 (466)
+++.|++.++++|..++ |++++++ ++++++|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 287 ~~~~i~d~a~~~l~~~~------I~~~~~v-----~~~~l~rIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig 350 (522)
T cd03340 287 SKLPIGDLATQYFADRD------IFCAGRV-----PEEDLKRVAQATGGSIQTT-----VSNITDDVLGTCGLFEERQVG 350 (522)
T ss_pred eCCCCcHHHHHHHHHCC------cEEEEeC-----CHHHHHHHHHHHCCEEeec-----cccCCccccccceEEEEEEEC
Confidence 99999999999998754 8899988 4677999999999999997 8899999999999997 66
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC
Q 012313 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (466)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g 359 (466)
++++++|.+|..+ ..+||++||+|+.+++|.+|+++||++++|+++++|
T Consensus 351 ~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 399 (522)
T cd03340 351 GERYNIFTGCPKA-------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKND 399 (522)
T ss_pred CEEEEEEECCCCC-------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7789999998754 358999999999999999999999999999999997
Q ss_pred -CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CC-CCeeEeCCCC
Q 012313 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DS-SDLGYNPARG 432 (466)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~-~~~G~d~~~~ 432 (466)
||||||++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++ .++|||+.+|
T Consensus 400 ~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g 479 (522)
T cd03340 400 SVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNE 479 (522)
T ss_pred CEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCC
Confidence 9999999999999999998765 899999999999999999999999999999999 999772 44 5799999999
Q ss_pred ccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 433 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 433 ~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
++.||++.|||||+.||+++|+.|+|+|++||+|
T Consensus 480 ~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~i 513 (522)
T cd03340 480 GIADNFEAFVWEPSLVKINALTAATEAACLILSV 513 (522)
T ss_pred cccchhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999996
No 25
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.8e-77 Score=641.60 Aligned_cols=401 Identities=13% Similarity=0.152 Sum_probs=358.1
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+|+|+++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 58 G~tIl~~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (525)
T TIGR02344 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSV 131 (525)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCC-----------ceeee--cCCCccceeEe
Q 012313 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND-----------LITIF--DRKALYNELNF 142 (466)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~~-----------~I~i~--~g~~~~d~~~l 142 (466)
|++++++++ +.+.|.++|++++++ ++.|++++++|+..++.++ .|+++ +|++..| +++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~d-S~l 210 (525)
T TIGR02344 132 LEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIED-SCV 210 (525)
T ss_pred HHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHh-cCc
Confidence 999999986 567799999887653 4789999999999997543 14554 4888765 899
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCC-------------HHHHHHHHH-----------HHHHcCC
Q 012313 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNVIRQASL-----------PCMMQGQ 198 (466)
Q Consensus 143 v~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~-------------~~~i~~~l~-----------~i~~~~~ 198 (466)
++|++|++++.++.| +..++||+|++++.+++. ++++.++++ ++.+.|.
T Consensus 211 v~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~ 283 (525)
T TIGR02344 211 LKGVMINKDVTHPKM-------RRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKP 283 (525)
T ss_pred ccceEEecccCCCCC-------ccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999877654 347899999999987654 466666554 7778888
Q ss_pred CEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee-eeEEE
Q 012313 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI 277 (466)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~-~~~v~ 277 (466)
+|+++++.+++.++++|..+ +|+++++. ++++|+|||++|||+++++ ++++++++||+ |+.|+
T Consensus 284 ~vIi~~k~I~dla~~~l~~~------~I~av~~v-----~~~~LerIa~~tGa~ii~~-----l~~l~~~~lG~~~~~v~ 347 (525)
T TIGR02344 284 DLVITEKGVSDLAQHYLLKA------NISAIRRV-----RKTDNNRIARACGATIVNR-----PEELRESDVGTGCGLFE 347 (525)
T ss_pred CEEEeCCCccHHHHHHHhHC------CceEEecC-----CHHHHHHHHHHhCCeEecc-----hhhCCHhhcCCcCCEEE
Confidence 88899999999999888763 59999977 6778999999999999996 88899999999 99887
Q ss_pred E---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHH
Q 012313 278 A---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (466)
Q Consensus 278 i---~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~ 354 (466)
+ +++++++|++|++++ .|||+|||+|+.+++|++|+++||++++++
T Consensus 348 ~~~ig~~~~~~~~g~~~~~-------------------------------~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 348 VKKIGDEYFTFFTECKDPK-------------------------------ACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred EEEECCeEEEEEEcCCCCC-------------------------------EEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 567899999887653 689999999999999999999999999999
Q ss_pred HHHc-CCcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCeeE
Q 012313 355 AKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGY 427 (466)
Q Consensus 355 a~~~-gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~-~~~~G~ 427 (466)
++++ +||||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. + +.++||
T Consensus 397 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gi 476 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGI 476 (525)
T ss_pred HHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeE
Confidence 9998 59999999999999999998765 889999999999999999999999999999999 999762 3 567999
Q ss_pred eCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 428 NPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 428 d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|+.+|++.||++.|||||+.||+++|+.|+++|++||||
T Consensus 477 d~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 515 (525)
T TIGR02344 477 DGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRI 515 (525)
T ss_pred ECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999996
No 26
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-76 Score=633.39 Aligned_cols=400 Identities=18% Similarity=0.227 Sum_probs=355.8
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 57 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03336 57 GATILKSIGVDNPAAKVL------VDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREA 130 (517)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC-----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---Cceeee--cCCCccceeEeEeeEE
Q 012313 84 LDCQARKIT-----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (466)
Q Consensus 84 L~~~~~~v~-----~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~---~~I~i~--~g~~~~d~~~lv~G~~ 147 (466)
|+++++|++ +.+.|.++|+|++++ ++.|++++++|+.+++.. ..|++. +|++.. ++.+++|++
T Consensus 131 L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~-ds~l~~G~v 209 (517)
T cd03336 131 LLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLK-DSYLDEGFL 209 (517)
T ss_pred HHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCcc-ceEEEeeEE
Confidence 999999884 246799999876653 578999999999998632 235554 587775 689999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccC--------------CHHHHH-----------HHHHHHHHcCCCEEE
Q 012313 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS--------------NSNVIR-----------QASLPCMMQGQSLLV 202 (466)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~--------------~~~~i~-----------~~l~~i~~~~~~lvI 202 (466)
+++++.++ ++..++||+|+++|.+++ +++++. +.++.+.+.|.++++
T Consensus 210 ~~~~~~~~--------~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~ 281 (517)
T cd03336 210 LDKKIGVN--------QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFI 281 (517)
T ss_pred EecccCCC--------CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99886543 234789999999998654 455442 346778899999999
Q ss_pred EecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 012313 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (466)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~---i~ 279 (466)
+++.|++.++++|..+ +|++||+|+ +++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 282 ~~~~I~~~~~~~l~~~------~I~av~~v~-----~~~L~rIa~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig 345 (517)
T cd03336 282 NRQLIYNYPEQLFADA------GIMAIEHAD-----FDGVERLALVTGGEIAST-----FDHPELVKLGTCKLIEEIMIG 345 (517)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecCC-----HHHHHHHHHHhCCEEecc-----cCCCCcccccccceEEEEEEC
Confidence 9999999999988875 499999995 555999999999999996 8899999999999986 45
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC
Q 012313 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (466)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g 359 (466)
++++++|.+|+++ +.|||+|||+|+.+++|.+|+++||++++|+++++|
T Consensus 346 ~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 394 (517)
T cd03336 346 EDKLIRFSGVAAG-------------------------------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDT 394 (517)
T ss_pred CeEEEEEEccCCC-------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6789999988653 469999999999999999999999999999999997
Q ss_pred -CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCc
Q 012313 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGN 433 (466)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~~~ 433 (466)
+|||||++|+++|+.|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+.+|+
T Consensus 395 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 474 (517)
T cd03336 395 RVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGT 474 (517)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCC
Confidence 9999999999999999999765 899999999999999999999999999999999 99976 25678999999999
Q ss_pred cccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 434 YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 434 ~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.||++.|||||+.||+++|+.|+++|++||+|
T Consensus 475 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 507 (517)
T cd03336 475 VGDMKELGITESFKVKRQVLLSASEAAEMILRV 507 (517)
T ss_pred ccchhhcCceecHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999986
No 27
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.7e-77 Score=636.17 Aligned_cols=404 Identities=15% Similarity=0.155 Sum_probs=360.0
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+|+|+++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 59 G~TIlk~i~~~hP~a~ll------~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 132 (522)
T TIGR02345 59 GATILKLLDIVHPAAKTL------VDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEK 132 (522)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCC----ceee--ecCCCccceeEeEeeE
Q 012313 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND----LITI--FDRKALYNELNFVKGM 146 (466)
Q Consensus 84 L~~~~~~v~-----~~~~l~~va~ts~~------~~~~l~~li~~a~~~vg~~~----~I~i--~~g~~~~d~~~lv~G~ 146 (466)
|+++++|++ +.+.+.++|+++++ +++.|++++++|+.+++.++ .|.+ .+|++..| +.+++|+
T Consensus 133 L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~d-s~~v~Gi 211 (522)
T TIGR02345 133 LKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQD-SVLVNGV 211 (522)
T ss_pred HHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHh-cceecce
Confidence 999999987 44789999999987 46889999999999997642 2333 26777764 7899999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccC-------------CHHH-----------HHHHHHHHHHcCCCEEE
Q 012313 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS-------------NSNV-----------IRQASLPCMMQGQSLLV 202 (466)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~-------------~~~~-----------i~~~l~~i~~~~~~lvI 202 (466)
+|+++|.+|+|.+.| ..+++|+|+++|.+++ ++++ +...++++.+.|.++++
T Consensus 212 v~~~~~~~~~~~~~~----~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~ 287 (522)
T TIGR02345 212 AFKKTFSYAGFEQQP----KKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVL 287 (522)
T ss_pred EEecccCccccccCC----ceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 999999999886544 4689999999998753 3333 33456667788999999
Q ss_pred EecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---e
Q 012313 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---T 279 (466)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i---~ 279 (466)
++++|++.++++|..+ +|++++++ .+++++++|++|||+++++ ++++++++||+|+.|+. +
T Consensus 288 ~~~~i~d~~~~~L~~~------~I~~~~~v-----~~~dl~ria~~tga~ii~~-----~~~l~~~~LG~~~~ie~~~~~ 351 (522)
T TIGR02345 288 SKLPIGDLATQYFADH------NIFCAGRV-----SDEDLKRVVKACGGSIQST-----TSDLEADVLGTCALFEERQIG 351 (522)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecC-----CHHHHHHHHHHhCCeEEcc-----hhhCChhhccCCceEEEEEEC
Confidence 9999999999988875 48999988 3566999999999999997 78899999999999874 4
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc-
Q 012313 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (466)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~- 358 (466)
+++++++.|++++ ..|||+|||+|+.+++|++|+++||++++|+++++
T Consensus 352 ~~r~~~~~g~~~~-------------------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~ 400 (522)
T TIGR02345 352 SERYNYFTGCPHA-------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKAR 400 (522)
T ss_pred CeEEEEEEcCCCC-------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6689999888654 36899999999999999999999999999999998
Q ss_pred CCcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCc
Q 012313 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGN 433 (466)
Q Consensus 359 gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~~~ 433 (466)
|||||||++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|+
T Consensus 401 ~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~ 480 (522)
T TIGR02345 401 KIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTED 480 (522)
T ss_pred CEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCc
Confidence 69999999999999999998765 889999999999999999999999999999999 999762 4567999999999
Q ss_pred cccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 434 YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 434 ~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.||++.|||||+.||+++|+.|+|+|++||+|
T Consensus 481 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (522)
T TIGR02345 481 IGDNFENFVWEPLLVKKNALKAAFEAACTILSI 513 (522)
T ss_pred ccchhhcCceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999986
No 28
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.5e-77 Score=639.89 Aligned_cols=400 Identities=15% Similarity=0.165 Sum_probs=350.4
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+|||+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 60 G~tIlk~i~~~hP~akll------~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 133 (531)
T TIGR02346 60 AATILRELEVQHPAAKLL------VMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEV 133 (531)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred Hhhhcc-ccC---CHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccCC--ce-----eee--cCCCccceeEeEee
Q 012313 84 LDCQAR-KIT---TFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEND--LI-----TIF--DRKALYNELNFVKG 145 (466)
Q Consensus 84 L~~~~~-~v~---~~~~l~~va~ts~~-----~~~~l~~li~~a~~~vg~~~--~I-----~i~--~g~~~~d~~~lv~G 145 (466)
|++++. ++. +.+.+.++|+++.+ +++.|++++++|+.+++.++ .+ .+. .|++.. ++++++|
T Consensus 134 L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~-ds~li~G 212 (531)
T TIGR02346 134 LEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSIS-NSEVLKG 212 (531)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChh-hceeEee
Confidence 999986 664 36789999887774 37899999999999998654 33 332 677665 7999999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEeccc-------------cCCH-----------HHHHHHHHHHHHcCCCEE
Q 012313 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNS-----------NVIRQASLPCMMQGQSLL 201 (466)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~-----------~~i~~~l~~i~~~~~~lv 201 (466)
++|++++.+ + +..++||+|++++.+ ++++ ++++++++++.+.|+|||
T Consensus 213 i~~~~~~~~--~-------~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lv 283 (531)
T TIGR02346 213 MVFNREAEG--S-------VKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVI 283 (531)
T ss_pred eEEeccCCC--C-------ceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 999998421 1 125677777777654 2232 346778999999999999
Q ss_pred EEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---
Q 012313 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA--- 278 (466)
Q Consensus 202 Ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i--- 278 (466)
|++++|++.++++|.. .+|++||+|+++ +++|||.+|||+++++ ++++++++||+|++|++
T Consensus 284 i~~~~I~d~~~~~l~~------~~I~av~~~~~~-----~l~~Ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~i 347 (531)
T TIGR02346 284 VTGGSVGDMALHYCEK------YNIMVLKIPSKF-----ELRRLCKTVGATPLAR-----LGAPQPEEIGYVDSVYVSEI 347 (531)
T ss_pred EECCCcCHHHHHHHHH------CCcEEEecCCHH-----HHHHHHHHHCCEEecc-----cccCCHhHccccceEEEEEE
Confidence 9999999999997775 359999999643 5999999999999986 78899999999999975
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc
Q 012313 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (466)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~ 358 (466)
+++++.++.++.. .++++||+|||+|+++++|++|+++||+|++|+++++
T Consensus 348 g~~~~~~i~~~~~------------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~ 397 (531)
T TIGR02346 348 GGQKVTVFKQENG------------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKD 397 (531)
T ss_pred CCEEEEEEEccCC------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567888887642 2468999999999999999999999999999999999
Q ss_pred C-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 012313 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (466)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~~ 432 (466)
| ||||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|
T Consensus 398 ~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~ 477 (531)
T TIGR02346 398 NRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAE 477 (531)
T ss_pred CCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCC
Confidence 9 9999999999999999998765 889999999999999999999999999999999 999763 456899999999
Q ss_pred c--cccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 433 N--YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 433 ~--~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+ +.||++.|||||+.||+++|+.|+|+|++||||
T Consensus 478 ~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (531)
T TIGR02346 478 SDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRV 513 (531)
T ss_pred CccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 9 599999999999999999999999999999997
No 29
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=2.2e-76 Score=633.26 Aligned_cols=400 Identities=19% Similarity=0.232 Sum_probs=355.7
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 69 G~TIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 142 (533)
T PTZ00212 69 GATILKSVWLDNPAAKIL------VDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKA 142 (533)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---Cceeee--cCCCccceeEeEeeEE
Q 012313 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (466)
Q Consensus 84 L~~~~~~v~~-----~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~---~~I~i~--~g~~~~d~~~lv~G~~ 147 (466)
|+++++|+++ .+.|.++|+|++++ .+.|++++.+|+..+... ..|++. +|+++. ++.+++|++
T Consensus 143 L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~-ds~lv~G~v 221 (533)
T PTZ00212 143 LEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLR-DSYLEDGFI 221 (533)
T ss_pred HHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcc-ccEEEEeEE
Confidence 9999999864 46799999877753 467999999999887432 234443 688775 689999999
Q ss_pred EeccccCCccccccccceeeecCceEEEecccc--------------CCHHHHH-----------HHHHHHHHcCCCEEE
Q 012313 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNSNVIR-----------QASLPCMMQGQSLLV 202 (466)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i--------------~~~~~i~-----------~~l~~i~~~~~~lvI 202 (466)
+++++.++ + +..++||+|+++|.++ ++++++. ..++.+.+.|.++++
T Consensus 222 ~~~~~~~~-~-------~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv 293 (533)
T PTZ00212 222 LEKKIGVG-Q-------PKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFI 293 (533)
T ss_pred EecccCCC-C-------CccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99986543 2 3478999999999876 5555432 346678889999999
Q ss_pred EecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 012313 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (466)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~---i~ 279 (466)
+++.|++.++++|..+ +|++||++ ++++++|||++|||+++++ ++++++++||+|++|+ ++
T Consensus 294 ~~~~I~d~a~~~L~~~------~I~avr~v-----~~~~l~rIa~~tGa~iis~-----l~~~~~~~LG~~~~v~~~~ig 357 (533)
T PTZ00212 294 NRQLIYNYPEQLFAEA------GIMAIEHA-----DFDGMERLAAALGAEIVST-----FDTPEKVKLGHCDLIEEIMIG 357 (533)
T ss_pred eCCCccHHHHHHHHHC------CCEEEecC-----CHHHHHHHHHHhCCEEeec-----CCCCCHHHccCCceEEEEEEC
Confidence 9999999999988875 48999987 3567999999999999996 8889999999999998 67
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC
Q 012313 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (466)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g 359 (466)
++++++|.+|.. ++.|||+|||+|+.+++|++|+++||+|++|+++++|
T Consensus 358 ~~~~~~~~~~~~-------------------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~ 406 (533)
T PTZ00212 358 EDKLIRFSGCAK-------------------------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDT 406 (533)
T ss_pred CeEEEEEEccCC-------------------------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 888999988754 3579999999999999999999999999999999997
Q ss_pred -CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCc
Q 012313 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGN 433 (466)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~~~ 433 (466)
+|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ +++.++|||+.+|+
T Consensus 407 ~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~ 486 (533)
T PTZ00212 407 RVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGT 486 (533)
T ss_pred CEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCc
Confidence 9999999999999999999765 899999999999999999999999999999999 99975 35678999999999
Q ss_pred cccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 434 YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 434 ~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.||++.|||||+.||+++|+.|+++|++||||
T Consensus 487 i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 519 (533)
T PTZ00212 487 VGDMKELGITESYKVKLSQLCSATEAAEMILRV 519 (533)
T ss_pred ccchhhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999996
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.4e-76 Score=625.88 Aligned_cols=384 Identities=14% Similarity=0.168 Sum_probs=346.9
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+++|+++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (480)
T cd03337 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKI 131 (480)
T ss_pred HHHHHHhccccChHHHHH------HHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC--C---------ceeee--cCCCccceeEe
Q 012313 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--D---------LITIF--DRKALYNELNF 142 (466)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~--~---------~I~i~--~g~~~~d~~~l 142 (466)
|++++++++ +.+.+.++|++++++ .+.|++++++|+..++++ + .|+++ +|++.. ++++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~-ds~l 210 (480)
T cd03337 132 LEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIE-DSRV 210 (480)
T ss_pred HHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHH-hccc
Confidence 999999987 778899999999983 458999999999999753 2 24554 477765 4899
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccC
Q 012313 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCT 222 (466)
Q Consensus 143 v~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~ 222 (466)
++|++|++++.+|.| +.++++|+|++++.+++. |+|++++|++.++++|..|
T Consensus 211 i~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~-----------------lvi~~k~I~d~al~~L~~~---- 262 (480)
T cd03337 211 LDGVMLNKDVTHPKM-------RRRIENPRIVLLDCPLEY-----------------LVITEKGVSDLAQHYLVKA---- 262 (480)
T ss_pred ccceEEeccCCCCCC-------CcEecCCCEEEEecCcce-----------------EEEeCCCccHHHHHHHHHC----
Confidence 999999999988755 347899999999998774 8999999999999999986
Q ss_pred CCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee-eeEEEE---ecceEEEEcCCCChhhHHHH
Q 012313 223 TEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVIA---TMDNVVIIGGSGELVDIQER 298 (466)
Q Consensus 223 ~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~-~~~v~i---~~~~~~~~~~~~~~~~i~~r 298 (466)
+|++|++. ++++|+|||++|||+++++ ++++++++||+ |+.++. ++++++++++|+++
T Consensus 263 --~I~~v~~v-----~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~------ 324 (480)
T cd03337 263 --GITALRRV-----RKTDNNRIARACGATIVNR-----PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP------ 324 (480)
T ss_pred --CcEEEEeC-----CHHHHHHHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC------
Confidence 49999987 5777999999999999997 78899999999 555543 45678999888764
Q ss_pred HHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc-CCcCCchHHHHHHHHHHHh
Q 012313 299 CEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDK 377 (466)
Q Consensus 299 ~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~-gvVpGGGa~e~~~s~~L~~ 377 (466)
+.|||++||+|+.+++|.+|+++||++++++++++ ++|||||++|+++|..|++
T Consensus 325 -------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~ 379 (480)
T cd03337 325 -------------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSE 379 (480)
T ss_pred -------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999 5999999999999999999
Q ss_pred hcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cC-CCCeeEeCCCCccccccccCCccccccHHH
Q 012313 378 LQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QD-SSDLGYNPARGNYVDMFKCGDVDPLKHVPS 451 (466)
Q Consensus 378 ~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~-~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~ 451 (466)
++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .+ +.++|+|+.+|++.||++.|||||+.||++
T Consensus 380 ~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~ 459 (480)
T cd03337 380 KAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQ 459 (480)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHH
Confidence 8765 899999999999999999999999999999999 99976 23 467999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 012313 452 EFAKATSMISLKNAI 466 (466)
Q Consensus 452 al~~A~~~A~~iL~i 466 (466)
+|+.|+++|++||||
T Consensus 460 ~l~~A~e~a~~iL~i 474 (480)
T cd03337 460 TYKTAIEAACMLLRI 474 (480)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999997
No 31
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-77 Score=579.30 Aligned_cols=403 Identities=16% Similarity=0.165 Sum_probs=360.9
Q ss_pred HHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHH
Q 012313 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (466)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~L 84 (466)
-||||.++|.||+||.| | ++|++||.||||||||||+||+|+|+++..+++ |+||..|+++|++|...+++.|
T Consensus 63 ATIlKlldivhPaaktl--V----dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki 136 (543)
T KOG0361|consen 63 ATILKLLDIVHPAAKTL--V----DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKI 136 (543)
T ss_pred HHHHHHHhhcChhHHHH--H----HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999 5 678999999999999999999999999999999 9999999999999999999999
Q ss_pred hhhccccC--C----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---Cceee--ecCCCccceeEeEeeEE
Q 012313 85 DCQARKIT--T----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMK 147 (466)
Q Consensus 85 ~~~~~~v~--~----~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~---~~I~i--~~g~~~~d~~~lv~G~~ 147 (466)
+++++.++ + ++.|++.|.|++++ .++|+++++||+..++.+ ..|-| .+||+++| +.+++|+.
T Consensus 137 ~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~d-S~lv~GVA 215 (543)
T KOG0361|consen 137 KELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMED-SLLVNGVA 215 (543)
T ss_pred HHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccch-hhhcccee
Confidence 99998876 2 35688999988864 578999999999998743 23444 48988875 78999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccc-------------cCCHHH-----------HHHHHHHHHHcCCCEEEE
Q 012313 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNV-----------IRQASLPCMMQGQSLLVV 203 (466)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~-----------i~~~l~~i~~~~~~lvIi 203 (466)
|++.|....|. .++..+.||+|+++|.+ ++++++ +.+.|+++..+|+++|+.
T Consensus 216 FkKtFsYAGfE----qqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLS 291 (543)
T KOG0361|consen 216 FKKTFSYAGFE----QQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLS 291 (543)
T ss_pred eeehccccchh----hCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEe
Confidence 99999988774 44558999999999864 344444 335688899999999998
Q ss_pred ecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Eec
Q 012313 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (466)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~---i~~ 280 (466)
.-.|.|.|.++|+...+ .||-|.| +++|.|+..+|||++.++ .+++.++.||.|..++ +++
T Consensus 292 kLpIGD~ATQyFAdrdi-----FCAGRV~------~eDl~Rv~~acGGsi~tt-----~~~i~~~~LG~C~~FeE~QvG~ 355 (543)
T KOG0361|consen 292 KLPIGDLATQYFADRDI-----FCAGRVP------EEDLNRVMQACGGSIQTT-----VSDIKEEVLGTCALFEERQVGG 355 (543)
T ss_pred cccchHHHHHHhhccCc-----eecCcCC------HHHHHHHHHhcCcchhhh-----hhhcchhhcchhhhHHHHhhcc
Confidence 88999999998886441 4555554 778999999999999996 7899999999999986 689
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-
Q 012313 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (466)
Q Consensus 281 ~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g- 359 (466)
++|.+|+||+.. +.||+++||+-+..++|.+|++|||++.+|.|++..
T Consensus 356 eRyN~Fegcp~a-------------------------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~ 404 (543)
T KOG0361|consen 356 ERYNLFEGCPKA-------------------------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDS 404 (543)
T ss_pred hhhhhhcCCCcc-------------------------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCc
Confidence 999999999865 469999999999999999999999999999999976
Q ss_pred CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCcc
Q 012313 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGNY 434 (466)
Q Consensus 360 vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~~~~ 434 (466)
+|+|||++||++|++|++|+.. .+++|+-+.+|++|||.|||+||+|||+|...+ ++||. +|..|||+|..++.+
T Consensus 405 vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i 484 (543)
T KOG0361|consen 405 VVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGI 484 (543)
T ss_pred EeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccch
Confidence 9999999999999999999987 999999999999999999999999999999999 99987 578999999999999
Q ss_pred ccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 435 VDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 435 ~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
.|+++.+||||+.||.+++..|+|+||+||+|
T Consensus 485 ~dn~~~~VwEP~~VK~Nai~aateAa~lIlsv 516 (543)
T KOG0361|consen 485 ADNFEKFVWEPSIVKINAITAATEAACLILSV 516 (543)
T ss_pred hhHHHhhccChHHHHHHHHHHHHHhhhheEeh
Confidence 99999999999999999999999999999975
No 32
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.6e-75 Score=624.38 Aligned_cols=400 Identities=18% Similarity=0.208 Sum_probs=352.7
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||++|++ +++|++||+++||||||+|+|+++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 58 G~tIlk~l~i~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02341 58 GATILKSIGVDNPAAKVL------VDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEA 131 (519)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---Cceeee--cCCCccceeEeEeeEE
Q 012313 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (466)
Q Consensus 84 L~~~~~~v~~-----~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~---~~I~i~--~g~~~~d~~~lv~G~~ 147 (466)
|+++++|+++ .++|.++|+|++++ .+.|+++..+|+..+... ..|++. +|+++. ++.+++|++
T Consensus 132 L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~-~s~l~~G~v 210 (519)
T TIGR02341 132 LKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLN-DSYLDEGFL 210 (519)
T ss_pred HHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcc-cceEEeeEE
Confidence 9999999853 46899999988874 356888888888877321 236665 577775 689999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccCC--------------HHHH-----------HHHHHHHHHcCCCEEE
Q 012313 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN--------------SNVI-----------RQASLPCMMQGQSLLV 202 (466)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~--------------~~~i-----------~~~l~~i~~~~~~lvI 202 (466)
+++++.++ + +..++||+|+++|.+++. ++++ ..+++.+.+.|.++++
T Consensus 211 ~~~~~~~~-~-------~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~ 282 (519)
T TIGR02341 211 LEKKIGVN-Q-------PKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFI 282 (519)
T ss_pred EeccCCCC-C-------ceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99886432 2 347899999999987642 3232 2336678899999999
Q ss_pred EecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 012313 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (466)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~---i~ 279 (466)
+++.|++.++++|..+ +|+++|+++ +++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 283 ~~~~I~~~~~~~l~~~------~I~~v~~~~-----~~~l~~ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~ig 346 (519)
T TIGR02341 283 NRQLIYNYPEQLFADA------GVMAIEHAD-----FEGIERLALVTGGEIVST-----FDHPELVKLGSCDLIEEIMIG 346 (519)
T ss_pred ECCcCCHHHHHHHHHC------CcEEEecCC-----HHHHHHHHHHhCCEEecc-----cccCCccccccCceEEEEEEC
Confidence 9999999999988864 599999995 456999999999999996 8889999999999886 45
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc-
Q 012313 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (466)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~- 358 (466)
+++++++.+|+++ +.|||+|||+|+.+++|++|+++||++++|+++++
T Consensus 347 ~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~ 395 (519)
T TIGR02341 347 EDKLLKFSGVKLG-------------------------------EACTIVLRGATQQILDESERSLHDALCVLSQTVKES 395 (519)
T ss_pred CEEEEEEEcCCCC-------------------------------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6789999988653 47999999999999999999999999999999998
Q ss_pred CCcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCc
Q 012313 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGN 433 (466)
Q Consensus 359 gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~~~ 433 (466)
+|||||||+|+++|..|++++.. ++++|+++++|++||+.|||+||+|||+|+.++ .+|++. ++.++|||+.+|+
T Consensus 396 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 475 (519)
T TIGR02341 396 RTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGE 475 (519)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCc
Confidence 59999999999999999998765 899999999999999999999999999999999 999762 4568999999999
Q ss_pred cccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 434 YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 434 ~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.||++.|||||+.||+++|+.|+++|++||+|
T Consensus 476 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 508 (519)
T TIGR02341 476 IADMRKLGIIESYKVKRAVVSSAAEAAEVILRV 508 (519)
T ss_pred ccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999986
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.5e-74 Score=611.08 Aligned_cols=386 Identities=17% Similarity=0.200 Sum_probs=343.9
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|++.||++|++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~l~~~hP~a~ll------~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (472)
T cd03341 50 AATILRELEVQHPAAKLL------VMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEI 123 (472)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred Hhhhccc-cC---CHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccC--Cce-----eee--cCCCccceeEeEee
Q 012313 84 LDCQARK-IT---TFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEN--DLI-----TIF--DRKALYNELNFVKG 145 (466)
Q Consensus 84 L~~~~~~-v~---~~~~l~~va~ts~~-----~~~~l~~li~~a~~~vg~~--~~I-----~i~--~g~~~~d~~~lv~G 145 (466)
|++++.+ +. +.+.+.++++++++ +++.|++++++|+.+++++ +.+ ++. +|++.. ++++++|
T Consensus 124 L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~-ds~lv~G 202 (472)
T cd03341 124 LEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLE-DSKVVRG 202 (472)
T ss_pred HHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcc-cceEEee
Confidence 9999865 43 45678888887753 3678999999999999864 433 332 677776 4799999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCc
Q 012313 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (466)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~ 225 (466)
++|++.+.. +...++||+|++++.+++. |+||||++++|+++++++|.. .+
T Consensus 203 iv~~~~~~~---------~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I~d~al~~l~~------~~ 253 (472)
T cd03341 203 MVFKREPEG---------SVKRVKKAKVAVFSCPFDI--------------GVNVIVAGGSVGDLALHYCNK------YG 253 (472)
T ss_pred EEEccccCC---------CceeccCCcEEEEeccccC--------------CCeEEEECCCCCHHHHHHHHH------CC
Confidence 999865321 2257899999999999885 889999999999999998664 45
Q ss_pred eEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHH
Q 012313 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQL 302 (466)
Q Consensus 226 i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~---~~~~~~~~~~~~~~i~~r~~~l 302 (466)
|+++|+++ +++|+|||++|||+++++ ++++++++||+|++|++.+ ++++++.++++.
T Consensus 254 I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---------- 313 (472)
T cd03341 254 IMVIKINS-----KFELRRLCRTVGATPLPR-----LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED---------- 313 (472)
T ss_pred eEEEEeCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCCCceEEEEEEECCeeEEEEEccCCC----------
Confidence 99999995 666999999999999997 7888999999999998654 789999887541
Q ss_pred HHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHhhcCC
Q 012313 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (466)
Q Consensus 303 ~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~ 381 (466)
++.+||+|||+|+++++|++|+++||++++|+++++| +|||||++|++++..|++++..
T Consensus 314 --------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~ 373 (472)
T cd03341 314 --------------------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEK 373 (472)
T ss_pred --------------------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhc
Confidence 3579999999999999999999999999999999998 9999999999999999998765
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCC--ccccccccCCccccccHHHHHH
Q 012313 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARG--NYVDMFKCGDVDPLKHVPSEFA 454 (466)
Q Consensus 382 -~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~~--~~~d~~~~gI~dp~~vk~~al~ 454 (466)
++++++++++|++||+.||++||+|||+|+.++ .+|+. .++.++|||+.+| ++.||++.|||||+.||+++|+
T Consensus 374 ~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~ 453 (472)
T cd03341 374 TPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIK 453 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHH
Confidence 789999999999999999999999999999999 99875 3456899999999 9999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 012313 455 KATSMISLKNAI 466 (466)
Q Consensus 455 ~A~~~A~~iL~i 466 (466)
+|+|+|++||||
T Consensus 454 ~A~e~a~~iL~i 465 (472)
T cd03341 454 LATEAAVTVLRV 465 (472)
T ss_pred HHHHHHHHHhhh
Confidence 999999999997
No 34
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=7e-74 Score=606.00 Aligned_cols=384 Identities=27% Similarity=0.358 Sum_probs=349.7
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|++.||+++++ ++++++||+++||||||+++|+++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 50 G~tIlk~i~~~hp~a~ll------~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (464)
T cd00309 50 GATILKEIEVEHPAAKLL------VEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEI 123 (464)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred Hhhhccc--cCCHHHHHHHHHHhcC------CChhHHHHHHHHHHhhcc------CCceeee--cCCCccceeEeEeeEE
Q 012313 84 LDCQARK--ITTFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMK 147 (466)
Q Consensus 84 L~~~~~~--v~~~~~l~~va~ts~~------~~~~l~~li~~a~~~vg~------~~~I~i~--~g~~~~d~~~lv~G~~ 147 (466)
|++++++ ..+.+++.++|+++++ +++.+++++++|+.++++ .+.|+++ +|++.. ++++++|++
T Consensus 124 L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~-ds~li~Gi~ 202 (464)
T cd00309 124 LKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLE-DSELVVGMV 202 (464)
T ss_pred HHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcc-cceeeeeEE
Confidence 9999998 5578899999999998 578899999999999987 5677776 465554 578999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceE
Q 012313 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVC 227 (466)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~ 227 (466)
|+++|.+|+| +..++||+|++++.+++. +++++++|++.++++|..+ +|+
T Consensus 203 ~~~~~~~~~m-------~~~~~n~~Ili~~~~Le~-----------------lIi~~~~I~~~al~~L~~~------~I~ 252 (464)
T cd00309 203 FDKGYLSPYM-------PKRLENAKILLLDCKLEY-----------------VVIAEKGIDDEALHYLAKL------GIM 252 (464)
T ss_pred EecCCCCCCC-------ceeecCceEEEEecCcce-----------------EEecCCCcCHHHHHHHHHC------CeE
Confidence 9999999987 347899999999999885 6677778999999988873 599
Q ss_pred EEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHH
Q 012313 228 IIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRS 304 (466)
Q Consensus 228 avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~r~~~l~~ 304 (466)
++++. ++++|+|||++|||+++++ ++++++++||+|+.|++. ++++++|.+++.+
T Consensus 253 ~v~~~-----~~~~L~~Ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------ 310 (464)
T cd00309 253 AVRRV-----RKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG------------ 310 (464)
T ss_pred EEEeC-----CHHHHHHHHHHhCCEEecc-----cccCCcccCccccEEEEEEEcCeeEEEEEecCCC------------
Confidence 99987 5778999999999999996 788999999999999764 4568888776543
Q ss_pred HhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc-CCcCCchHHHHHHHHHHHhhcCC-C
Q 012313 305 TIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-N 382 (466)
Q Consensus 305 ~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~-gvVpGGGa~e~~~s~~L~~~~~~-~ 382 (466)
+.|||+|||+|+.+++|++|+++||++++|+++++ ++|||||++|+++++.|++++.. +
T Consensus 311 -------------------~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~ 371 (464)
T cd00309 311 -------------------KVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLP 371 (464)
T ss_pred -------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccc
Confidence 46999999999999999999999999999999999 59999999999999999998875 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccccCCccccccHHHHHHHHHH
Q 012313 383 SDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATS 458 (466)
Q Consensus 383 ~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~ 458 (466)
+++|+++++|++||+.||++||+|||+|+.++ .+|++. +..++|+|..+|++.||++.|||||+.||+++|+.|+|
T Consensus 372 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e 451 (464)
T cd00309 372 GKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATE 451 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999763 34578999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 012313 459 MISLKNAI 466 (466)
Q Consensus 459 ~A~~iL~i 466 (466)
+|++||+|
T Consensus 452 ~a~~iL~i 459 (464)
T cd00309 452 AASLILTI 459 (464)
T ss_pred HHHHHHhH
Confidence 99999986
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=6e-69 Score=571.02 Aligned_cols=401 Identities=21% Similarity=0.323 Sum_probs=359.7
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
+.||++++++.||+++++ ++++++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.+++.
T Consensus 31 g~tIl~~l~~~~P~~~ll------~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~ 104 (485)
T PF00118_consen 31 GATILKSLKINHPIAKLL------VEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEY 104 (485)
T ss_dssp HHHHHHHSTBSSHHHHHH------HHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhccchhhhH------HHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhh
Confidence 569999999999999999 6889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccCCH-HHHHHHHHHhcCCC------hhHHHHHHHHHHhhccC---Cceee--ecCCCccceeEeEeeEEEecc
Q 012313 84 LDCQARKITTF-EEIAQVGTTAANGD------GEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMKLEWG 151 (466)
Q Consensus 84 L~~~~~~v~~~-~~l~~va~ts~~~~------~~l~~li~~a~~~vg~~---~~I~i--~~g~~~~d~~~lv~G~~~~~~ 151 (466)
|+++++++++. +.++++|+++++++ +.+++++++|+..+..+ +.+.+ ..|++. +++++++|++|+++
T Consensus 105 l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i~g~~~-~dS~li~Giv~~~~ 183 (485)
T PF00118_consen 105 LEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKIPGGSI-SDSELINGIVLDKG 183 (485)
T ss_dssp HHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEEESSSS-GGEEEESEEEESSS
T ss_pred hhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhhhccccc-cccccccceeeecc
Confidence 99999999866 89999999999976 79999999999433211 12333 256666 46899999999999
Q ss_pred ccCCccccccccceeeecCceEEEeccccCCHHH-----------------------HHHHHHHHHHcCCCEEEEecccc
Q 012313 152 LKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-----------------------IRQASLPCMMQGQSLLVVAEDVE 208 (466)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~-----------------------i~~~l~~i~~~~~~lvIi~~~i~ 208 (466)
+.++.| +..+++|+|++++.+++..+. +.++++++.+.|++++|++++|+
T Consensus 184 ~~~~~~-------~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~ 256 (485)
T PF00118_consen 184 FSSPNM-------PKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSID 256 (485)
T ss_dssp BSSTTS-------BSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBT
T ss_pred cccccc-------ccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccc
Confidence 998844 336799999999998876665 88999999999999999999999
Q ss_pred hhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEE---EEecceEEE
Q 012313 209 NEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVI 285 (466)
Q Consensus 209 ~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v---~i~~~~~~~ 285 (466)
+.++++|..|+ |.+++.. ++++|++||++|||+++++ +++++++++|+|+.+ +++++++++
T Consensus 257 ~~~l~~l~~~~------I~~i~~v-----~~~~l~~i~~~tg~~ii~~-----~~~l~~~~lG~~~~v~~~~i~~~~~~~ 320 (485)
T PF00118_consen 257 DEALQYLNKNG------ILVIRRV-----SKEDLERIARATGASIISS-----LDDLSDEDLGFCKSVEEREIGNKKYIF 320 (485)
T ss_dssp HHHHHHHHHCT------HEEESSE-----HHHHHHHHHHHHTSBEBSS-----CGGSTGGGSEEEEEEEEEEETSSEEEE
T ss_pred cccchhhhhhh------hhccccc-----hHHHHHhhhcccCCcEecc-----cccccchhhhhhhhhhhcccccccccc
Confidence 99999998765 7788877 5777999999999999997 788888889999999 678889999
Q ss_pred EcC--CCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcC
Q 012313 286 IGG--SGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVP 362 (466)
Q Consensus 286 ~~~--~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g-vVp 362 (466)
+.+ +. .++.+||+|||+|+.+++|++|+++||++++|++++++ +||
T Consensus 321 ~~~~~~~-------------------------------~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvp 369 (485)
T PF00118_consen 321 IEGIGCL-------------------------------SSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVP 369 (485)
T ss_dssp EEEHSES-------------------------------SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred ccccccc-------------------------------ccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceee
Confidence 883 32 34679999999999999999999999999999999975 999
Q ss_pred CchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCeeEeCCCCcccccc
Q 012313 363 GSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNPARGNYVDMF 438 (466)
Q Consensus 363 GGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~--~~~~~~G~d~~~~~~~d~~ 438 (466)
|||++|++++++|++++.. ++++++++++|++||+.||++|++|||+|+.++ ++|+. ..++++|||..+|++.||+
T Consensus 370 GGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~ 449 (485)
T PF00118_consen 370 GGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMK 449 (485)
T ss_dssp TTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETT
T ss_pred cCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceeccc
Confidence 9999999999999888875 889999999999999999999999999999999 99987 3456999999999999999
Q ss_pred ccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 439 KCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 439 ~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.|||||+.+|.++|+.|+++|++||+|
T Consensus 450 ~~gi~dp~~~k~~~l~~A~~~a~~iL~i 477 (485)
T PF00118_consen 450 EAGILDPLLVKISALKSAVEIASLILRI 477 (485)
T ss_dssp TTTCEEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986
No 36
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-70 Score=529.19 Aligned_cols=413 Identities=19% Similarity=0.216 Sum_probs=356.6
Q ss_pred HHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHH
Q 012313 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (466)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~L 84 (466)
-||||.|.+-||+|||| | ++|++||.|+||||||||+|||.||+.+.+|++ |+||+.|...|++|.+.++++|
T Consensus 69 aTILk~m~vlhP~akmL--v----elS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il 142 (534)
T KOG0358|consen 69 ATILKQMNVLHPAAKML--V----ELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDIL 142 (534)
T ss_pred HHHHHHHhhhChHHHHH--H----HhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHH
Confidence 58999999999999999 4 778999999999999999999999999999999 9999999999999999999999
Q ss_pred hhhccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc-C-------Cceee--ecCCCccceeEeEeeE
Q 012313 85 DCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE-N-------DLITI--FDRKALYNELNFVKGM 146 (466)
Q Consensus 85 ~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~-~-------~~I~i--~~g~~~~d~~~lv~G~ 146 (466)
.+|+.|++ |++.|.+-|+||+|+ +..++.+.++|+.++-. + ..|++ +.||.. |++++++|+
T Consensus 143 ~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtv-dDte~i~gl 221 (534)
T KOG0358|consen 143 DEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTV-DDTELIKGL 221 (534)
T ss_pred HhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCcc-chhhhhcce
Confidence 99999986 778899999999873 56799999999998743 1 12444 357776 568999999
Q ss_pred EEeccccCCcccccccccee-----eecCceEEEecc-ccCCH-----------HHHHHHHHHHHHcCCCEEEEecccch
Q 012313 147 KLEWGLKSPYFFTHKNKKEC-----VLDGALVLIYDT-KISNS-----------NVIRQASLPCMMQGQSLLVVAEDVEN 209 (466)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~-----~l~~~~Il~~d~-~i~~~-----------~~i~~~l~~i~~~~~~lvIi~~~i~~ 209 (466)
+|+.......-++..++.++ .+++|+--+-++ -++++ +++++++++|+++|++++++|++|=.
T Consensus 222 vl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILR 301 (534)
T KOG0358|consen 222 VLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILR 301 (534)
T ss_pred EEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHH
Confidence 99876653323332233222 345555211111 13343 34678899999999999999999999
Q ss_pred hhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE----ecceEEE
Q 012313 210 EVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA----TMDNVVI 285 (466)
Q Consensus 210 ~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i----~~~~~~~ 285 (466)
++++.|+.|.+.. ++|++||.. .++++|.+|+.+|++++.+ ++-++++.||+++.++. ++.+++-
T Consensus 302 davsDLAlHfL~k-lkimvikdi-----eRediefick~l~c~Pia~-----id~f~~d~Lg~adlveE~~~~G~gkivk 370 (534)
T KOG0358|consen 302 DAVSDLALHFLAK-LKIMVIKDI-----EREDIEFICKTLGCKPIAD-----IDHFTADKLGSADLVEETDSSGEGKIVK 370 (534)
T ss_pred HHHHHHHHHHHHh-CcEEEEccc-----cHhhHHHHHhhcCCeecch-----hhhcChhhcCcchhhhhcccCCCccEEE
Confidence 9999999988776 899999977 4666999999999999997 89999999999999864 3557888
Q ss_pred EcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcCCc
Q 012313 286 IGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGS 364 (466)
Q Consensus 286 ~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g-vVpGG 364 (466)
+.|+.++ |..++|++||+++..++|.+|++|||||++|+..+.. .+|||
T Consensus 371 ~tg~~n~------------------------------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GG 420 (534)
T KOG0358|consen 371 ITGIQNA------------------------------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGG 420 (534)
T ss_pred EEEeecC------------------------------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCC
Confidence 8877653 6789999999999999999999999999999999875 99999
Q ss_pred hHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCccccccc
Q 012313 365 GVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGNYVDMFK 439 (466)
Q Consensus 365 Ga~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~~~~~d~~~ 439 (466)
|+.||+++..|..++.. .|.+.|++++|++|||.||.+||+|||+||..+ .+||+ +|..++|+|++.|.+.||++
T Consensus 421 GapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~e 500 (534)
T KOG0358|consen 421 GAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILE 500 (534)
T ss_pred CCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHH
Confidence 99999999999999886 899999999999999999999999999999999 99987 46789999999999999999
Q ss_pred cCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 440 CGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 440 ~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
..|+.|+.|-.++++.|+|...+||+|
T Consensus 501 e~VvQPllVs~SaitlA~Etvr~ILKI 527 (534)
T KOG0358|consen 501 ENVVQPLLVSISAITLATETVRSILKI 527 (534)
T ss_pred HhcccceeeeHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999987
No 37
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-67 Score=508.45 Aligned_cols=399 Identities=19% Similarity=0.248 Sum_probs=351.1
Q ss_pred HHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHH
Q 012313 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (466)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~L 84 (466)
-||||++.+++|+||+| | ++|+.||+|||||||||+|||++||++|.+|+. .+||+.|++|||+|...|++.|
T Consensus 63 AtILksi~vDnpaAkvL--v----~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL 136 (527)
T KOG0363|consen 63 ATILKSIGVDNPAAKVL--V----DISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEAL 136 (527)
T ss_pred HHHHHhcCCCCchhhhe--e----ccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999 5 668999999999999999999999999999999 9999999999999999999999
Q ss_pred hhhccccC-C----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCC---ceee--ecCCCccceeEeEeeEEE
Q 012313 85 DCQARKIT-T----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND---LITI--FDRKALYNELNFVKGMKL 148 (466)
Q Consensus 85 ~~~~~~v~-~----~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~~---~I~i--~~g~~~~d~~~lv~G~~~ 148 (466)
.+.++... + +++|.++|+|++.+ .+.|+++.++|+.++...+ .|+| ..||++.| +.+-+|+.+
T Consensus 137 ~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~d-SfLDeGFlL 215 (527)
T KOG0363|consen 137 TKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLED-SFLDEGFLL 215 (527)
T ss_pred HHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCcccc-cccccccee
Confidence 99887754 2 47899999987753 4689999999999985432 3554 36777765 678899888
Q ss_pred eccccCCccccccccceeeecCceEEEecccc--------------CCH-----------HHHHHHHHHHHHcCCCEEEE
Q 012313 149 EWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNS-----------NVIRQASLPCMMQGQSLLVV 203 (466)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i--------------~~~-----------~~i~~~l~~i~~~~~~lvIi 203 (466)
++.+-- .++..++||+||+-+.+. ++. +.++..+++|.+.|+|++|-
T Consensus 216 ~K~igv--------~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiN 287 (527)
T KOG0363|consen 216 DKKIGV--------NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFIN 287 (527)
T ss_pred ccccCC--------CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEee
Confidence 875431 123478899988887642 221 24667789999999999999
Q ss_pred ecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Eec
Q 012313 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (466)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~---i~~ 280 (466)
.+-|-+.+.++|.. .+|++|....|.. +|||+..|||.++|. +++++...||+|+.++ +++
T Consensus 288 RQLiYnyPeqLf~d------agi~aIEHADFdG-----iERLalvtGGeI~ST-----Fd~p~~~klG~C~~IeeimiGe 351 (527)
T KOG0363|consen 288 RQLIYNYPEQLFAD------AGIMAIEHADFDG-----IERLALVTGGEIVST-----FDNPELVKLGECDLIEEIMIGE 351 (527)
T ss_pred hhHhhcCHHHHHhh------cCcceeecccchh-----HHHHhhcccceeeec-----cCCcchhccccchhhHHHhcCc
Confidence 99999999887775 3599999997765 899999999999996 9999999999999875 799
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-
Q 012313 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (466)
Q Consensus 281 ~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g- 359 (466)
+++.-|.|+.. |..|||++||+|++.+||.+|++|||||+.....++.
T Consensus 352 d~li~FSGv~~-------------------------------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esr 400 (527)
T KOG0363|consen 352 DKLIKFSGVKL-------------------------------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESR 400 (527)
T ss_pred cceeeeccccc-------------------------------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 99999999864 4469999999999999999999999999998888875
Q ss_pred CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCcc
Q 012313 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGNY 434 (466)
Q Consensus 360 vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~~~~ 434 (466)
+|.|||++||.+++++.+++.. +|++..++++|++||..+|.+||.|||+|+.++ .+|++ .|..++|+|+++|++
T Consensus 401 vv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i 480 (527)
T KOG0363|consen 401 VVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEI 480 (527)
T ss_pred eeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCch
Confidence 9999999999999999999886 999999999999999999999999999999999 99988 467899999999999
Q ss_pred ccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 435 VDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 435 ~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
.||.+.||+|++.||++.+.+|.|+|.+|||+
T Consensus 481 ~dm~~~Gi~es~~vK~~vv~sasEaae~ilrv 512 (527)
T KOG0363|consen 481 GDMRELGIVESLKVKQAVVSSASEAAEMILRV 512 (527)
T ss_pred hhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 99999999999999999999999999999984
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-62 Score=487.71 Aligned_cols=404 Identities=17% Similarity=0.222 Sum_probs=352.3
Q ss_pred HHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHH
Q 012313 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (466)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~L 84 (466)
-|||+.++++||++|+| | ++++.||+|+|||||+|++++++||++|.+|+. ++||+.|++||+.|+..+++++
T Consensus 62 AtiL~~l~V~HPa~KiL--v----elaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i 135 (545)
T KOG0360|consen 62 ATILSLLEVEHPAAKVL--V----ELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYI 135 (545)
T ss_pred HHHHHhhhhcchHHHHH--H----HHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHh
Confidence 58999999999999999 4 778999999999999999999999999999999 9999999999999999999999
Q ss_pred hh-hccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---CC-------ceeee--cCCCccceeEeE
Q 012313 85 DC-QARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---ND-------LITIF--DRKALYNELNFV 143 (466)
Q Consensus 85 ~~-~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~---~~-------~I~i~--~g~~~~d~~~lv 143 (466)
.+ ++.|++ ..+-|.++|++++++ +++|++++++|+..+.. +| .+.|- .|.+.. ++.++
T Consensus 136 ~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~-eS~l~ 214 (545)
T KOG0360|consen 136 TEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQI-ESMLL 214 (545)
T ss_pred hccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccch-hheee
Confidence 87 566776 357899999998863 68999999999987632 12 23432 566554 68899
Q ss_pred eeEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHHH-----------HHHHHHHHcCCC
Q 012313 144 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIR-----------QASLPCMMQGQS 199 (466)
Q Consensus 144 ~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i~-----------~~l~~i~~~~~~ 199 (466)
.|+.+.....+..| +.++.+++|+++|+. +.+|+++. .-++++..+|++
T Consensus 215 ~GyaLnc~~asq~m-------~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~gan 287 (545)
T KOG0360|consen 215 PGYALNCSVASQMM-------PLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGAN 287 (545)
T ss_pred cceeeeccHhhhcc-------ccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCc
Confidence 99999988877655 346779999999974 45665433 236678899999
Q ss_pred EEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCC-cCCCCCCCceeeeEEE-
Q 012313 200 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMN-STYFVPLKLGSCKRVI- 277 (466)
Q Consensus 200 lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~-~~~~~~~~lG~~~~v~- 277 (466)
+|+++++|||..+.+|... +++|||+. +|++|++|+++||++++++...+. -+.+.+.++|+|++|.
T Consensus 288 vVLtt~gIddmc~K~~vea------gamAVrR~-----~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvq 356 (545)
T KOG0360|consen 288 VVLTTGGIDDMCLKYFVEA------GAMAVRRC-----KKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQ 356 (545)
T ss_pred EEEEcCCccHHHHHHHHHc------chhhhHHH-----HHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHH
Confidence 9999999999999999874 48899998 688899999999999999853332 2467889999999984
Q ss_pred --EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHH
Q 012313 278 --ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (466)
Q Consensus 278 --i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a 355 (466)
+++++++++.+.+.. .|.|++||+|++.+||++|+++||+|++|..
T Consensus 357 eri~dde~ilikg~ka~--------------------------------~aSiILrgaNd~~~DEmers~hdaL~Vlkrt 404 (545)
T KOG0360|consen 357 ERIGDDELILIKGTKAT--------------------------------SASIILRGANDFMLDEMERSLHDALCVLKRT 404 (545)
T ss_pred HhcccceeEEeccCccc--------------------------------eeeEEEecCCcccHhhhccchhhHHHHHHHH
Confidence 689999999875432 4899999999999999999999999999999
Q ss_pred HHcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc-----C------
Q 012313 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ-----D------ 421 (466)
Q Consensus 356 ~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~-----~------ 421 (466)
++++ +|||||++|.+++-+|+.|+.+ +++||.++..|+.||..+|++|+-||+.|+.++ .+++.. .
T Consensus 405 Les~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~ 484 (545)
T KOG0360|consen 405 LESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLL 484 (545)
T ss_pred hccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCcccc
Confidence 9998 9999999999999999999987 899999999999999999999999999999999 998761 1
Q ss_pred CCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 422 SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 422 ~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
-.|+|.|+.+|+++|.++.|+++|..+|...|+.|+++|..+|||
T Consensus 485 ~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLri 529 (545)
T KOG0360|consen 485 LKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRI 529 (545)
T ss_pred chhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcch
Confidence 248999999999999999999999999999999999999999997
No 39
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-62 Score=483.03 Aligned_cols=399 Identities=14% Similarity=0.135 Sum_probs=349.2
Q ss_pred HhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHh
Q 012313 7 SLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLD 85 (466)
Q Consensus 7 ~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~L~ 85 (466)
.||.++++.||+||.+ + ++|++||+|||||||||++||+|+|.++..+++ |+||+.+++.|.+|++.++..++
T Consensus 63 ailrei~Vahpaaksm--i----el~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~ 136 (527)
T KOG0364|consen 63 AILREIDVAHPAAKSM--I----ELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALD 136 (527)
T ss_pred HHHHHHhhcCcchhhH--h----hhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999 4 778999999999999999999999999999999 99999999999999999999999
Q ss_pred hhccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-Cc-e------eee--cCCCccceeEeEeeEE
Q 012313 86 CQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-DL-I------TIF--DRKALYNELNFVKGMK 147 (466)
Q Consensus 86 ~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~-~~-I------~i~--~g~~~~d~~~lv~G~~ 147 (466)
+++.|++ |...+.++...+... ++.++++..+|+++++.+ |. | +++ +|+.++ ++.+++|+.
T Consensus 137 ~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~-~s~vl~Gv~ 215 (527)
T KOG0364|consen 137 KISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLE-DSCVLKGVM 215 (527)
T ss_pred hhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccc-ccceeccee
Confidence 9888775 556677776655531 556889999999999864 32 2 222 677776 478999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccCC------------------------HHHHHHHHHHHHHcCCCEEEE
Q 012313 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN------------------------SNVIRQASLPCMMQGQSLLVV 203 (466)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~------------------------~~~i~~~l~~i~~~~~~lvIi 203 (466)
+.+...||.|. ..++||+|+++|.++.. .+++..+++.+..-...||++
T Consensus 216 ~nkdv~Hpkmr-------r~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVit 288 (527)
T KOG0364|consen 216 INKDVTHPKMR-------RAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVIT 288 (527)
T ss_pred eccccCcHHHH-------HHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEe
Confidence 99999999653 36899999999986431 134566777777777778888
Q ss_pred ecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee-eeEEEE---e
Q 012313 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVIA---T 279 (466)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~-~~~v~i---~ 279 (466)
.+++++.+.++|..++ +.++|+. ||.|..+++++||++++++ ++|+.+.+.|. |+.+++ +
T Consensus 289 ekG~sdla~hyl~k~~------iT~~rr~-----rKtDn~ria~acga~iv~r-----pedl~e~dvGt~agLf~~kK~g 352 (527)
T KOG0364|consen 289 EKGVSDLAQHYLLKAN------ITAIRRL-----RKTDNNRIARACGARIVNR-----PEDLPERDVGTGAGLFEVKKIG 352 (527)
T ss_pred ccchhHHHHHHHHhcC------chhhhhh-----hccccchhhhhcCceeccC-----hhhCchhccCcccceeeeeccC
Confidence 9999999999998765 6678866 8999999999999999997 89999999996 888875 5
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC
Q 012313 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (466)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g 359 (466)
++.|+||..|.+|++ |||++||+|..+++|.+|.+.||+.++|+.+-++
T Consensus 353 deyf~f~~~Ck~pka-------------------------------Ctillrg~skdil~e~ernlqda~~varn~ii~P 401 (527)
T KOG0364|consen 353 DEYFTFFTDCKEPKA-------------------------------CTILLRGPSKDILNEVERNLQDAMGVARNVIINP 401 (527)
T ss_pred chhhhhhhhcCCCcc-------------------------------eEEEeccCchhHHHHHHHHhhhHHHHHHHhccCC
Confidence 778999999999864 9999999999999999999999999999998876
Q ss_pred -CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCc
Q 012313 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGN 433 (466)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~~~ 433 (466)
.+|||||+||.+|+.|++.+.. ++-+|+.+.+.+.||+.+||+|++|+|.|+... ..+++ .|...+|+|..+|.
T Consensus 402 klvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~ 481 (527)
T KOG0364|consen 402 KLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGV 481 (527)
T ss_pred cccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceee
Confidence 9999999999999999987665 899999999999999999999999999999988 77766 24467899999999
Q ss_pred cccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 434 YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 434 ~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
++||.+.++|+|+.||.+..++|.+.|+++|||
T Consensus 482 iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRI 514 (527)
T KOG0364|consen 482 IVDMVELGIWEPEAVKLQTGKTAVESACLLLRI 514 (527)
T ss_pred EeeeeeccccchhhhhhhhhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999997
No 40
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-59 Score=467.83 Aligned_cols=407 Identities=16% Similarity=0.176 Sum_probs=336.6
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
|-||+++++++||+||++ +.++++|+++.||||+.+|+|+++||++|.+|+. |++|..|++||++|...+++.
T Consensus 68 aatIlrelev~HPaakll------v~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~ 141 (537)
T KOG0362|consen 68 AATILRELEVEHPAAKLL------VEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEI 141 (537)
T ss_pred hHHHHHHhhccCcHHHHH------HHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999 4788999999999999999999999999999999 999999999999999999999
Q ss_pred Hhhhccc-cCCHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccCC-----ceeee--cCCCccceeEeEeeEEEec
Q 012313 84 LDCQARK-ITTFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEND-----LITIF--DRKALYNELNFVKGMKLEW 150 (466)
Q Consensus 84 L~~~~~~-v~~~~~l~~va~ts~~-----~~~~l~~li~~a~~~vg~~~-----~I~i~--~g~~~~d~~~lv~G~~~~~ 150 (466)
|+++... +.|.++..++++++++ +++++++++++|+.++.+.+ +|++- .|++.++ |.+++||+|++
T Consensus 142 l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~-S~Vv~GmVfkr 220 (537)
T KOG0362|consen 142 LPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLED-SCVVCGMVFKR 220 (537)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCccc-ceeeEEEEecc
Confidence 9998643 2232222244444443 37899999999999987653 35552 6777875 78999999998
Q ss_pred cccCCcccccccccee-eecCce-EEEeccc----cCCHHHH-----------HHHHHHHHHcCCCEEEEecccchhhhh
Q 012313 151 GLKSPYFFTHKNKKEC-VLDGAL-VLIYDTK----ISNSNVI-----------RQASLPCMMQGQSLLVVAEDVENEVLG 213 (466)
Q Consensus 151 ~~~~~~~~~~~~~~~~-~l~~~~-Il~~d~~----i~~~~~i-----------~~~l~~i~~~~~~lvIi~~~i~~~al~ 213 (466)
+....- +..+..++ .+.+|+ +.-++.+ |++++++ ...++.+..+|.+++|+.+.+++.+|+
T Consensus 221 ~~eG~v--~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lh 298 (537)
T KOG0362|consen 221 DPEGEV--KSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLH 298 (537)
T ss_pred ccCCcc--cccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhh
Confidence 866431 22222222 334442 2222322 5555544 345777888999999999999999998
Q ss_pred hHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---EecceEEEEcCCC
Q 012313 214 DIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSG 290 (466)
Q Consensus 214 ~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~ 290 (466)
++ |+ ++|+++|.++ |.+|.+||+..||++..+ +..+.++.+|+|++|. ++++.+++|....
T Consensus 299 fl--nk----y~ImVlqi~S-----k~eLrrlcrtvGA~~l~r-----l~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~ 362 (537)
T KOG0362|consen 299 FL--NK----YKIMVLQINS-----KFDLRRLCRTVGATALPR-----LFPPAPEELGYCDSVSTQEIGDTLVVVFRWES 362 (537)
T ss_pred hh--cc----ccEEEEEecc-----HhhHHHHHHHcCCccchh-----ccCCCCccccccceeeeeecCCceEEEEeecc
Confidence 43 43 7899999994 888999999999999997 7888899999999884 6777877776422
Q ss_pred ChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHH
Q 012313 291 ELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALL 369 (466)
Q Consensus 291 ~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g-vVpGGGa~e~ 369 (466)
. .+.++||++||+|+..+|+.||.++|++++.|...+++ ++||+|++|+
T Consensus 363 ~------------------------------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEi 412 (537)
T KOG0362|consen 363 T------------------------------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEI 412 (537)
T ss_pred C------------------------------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHH
Confidence 1 13578999999999999999999999999999999987 9999999999
Q ss_pred HHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCeeEeCCCC-ccccccccCCcc
Q 012313 370 YASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNPARG-NYVDMFKCGDVD 444 (466)
Q Consensus 370 ~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~--~~~~~~G~d~~~~-~~~d~~~~gI~d 444 (466)
++++.|.+++.. +|.+|+++..|++||+.+|++||+|||++..++ ++|.. ++..+.|+|+... ...|+.++||||
T Consensus 413 eLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D 492 (537)
T KOG0362|consen 413 ELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWD 492 (537)
T ss_pred HHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHH
Confidence 999999999875 999999999999999999999999999999999 98876 3345678888766 589999999999
Q ss_pred ccccHHHHHHHHHHHHHHHhcC
Q 012313 445 PLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 445 p~~vk~~al~~A~~~A~~iL~i 466 (466)
-+.+|.++|+.|+++|+++|++
T Consensus 493 ~~~~K~~a~k~at~aa~tvl~v 514 (537)
T KOG0362|consen 493 TLAVKAQAIKLATEAALTVLTV 514 (537)
T ss_pred HHHHHHHHHHHHHhhhheeeeh
Confidence 9999999999999999999985
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-59 Score=460.29 Aligned_cols=399 Identities=17% Similarity=0.219 Sum_probs=337.9
Q ss_pred HHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHH
Q 012313 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (466)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~L 84 (466)
-++|++|+|+||++-++ .-++..||+..||||||+|+|.|+||++|..++. |+||..|..||+.|.+.++++|
T Consensus 60 nvLl~emQiqhPTa~lI------akaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L 133 (520)
T KOG0359|consen 60 NVLLKEMQIQHPTASLI------AKVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFL 133 (520)
T ss_pred hhhHHHHhhcCchHHHH------HHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhh
Confidence 47999999999999665 3577899999999999999999999999999999 9999999999999999999999
Q ss_pred hhhccccCCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhc-cCCcee---ee---cCCCccceeEeEeeEEEecc
Q 012313 85 DCQARKITTFEEIAQVGTTAANG------DGEIGELIAKVFEKGW-ENDLIT---IF---DRKALYNELNFVKGMKLEWG 151 (466)
Q Consensus 85 ~~~~~~v~~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg-~~~~I~---i~---~g~~~~d~~~lv~G~~~~~~ 151 (466)
+..+.++ +++.|..||+++++. -+.+.+++++++..+. .++.|. ++ .......+..+++|+++|||
T Consensus 134 ~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg 212 (520)
T KOG0359|consen 134 EKVSREV-DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHG 212 (520)
T ss_pred hccccch-hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCC
Confidence 9777776 578899999999975 2356777788877665 233222 22 22222335789999999999
Q ss_pred ccCCccccccccceeeecCceEEEeccccCC-------------HHH-----------HHHHHHHHHHcC---CCEEEE-
Q 012313 152 LKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNV-----------IRQASLPCMMQG---QSLLVV- 203 (466)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~-------------~~~-----------i~~~l~~i~~~~---~~lvIi- 203 (466)
..||.|++ .+++++||++|..+++ ++| +.+-+++|.+-+ +.+|++
T Consensus 213 ~rHpdmp~-------~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvin 285 (520)
T KOG0359|consen 213 ARHPDMPR-------RVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVIN 285 (520)
T ss_pred CCCccccc-------chhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEec
Confidence 99998854 7889999999975432 111 122344444433 346655
Q ss_pred ecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Eec
Q 012313 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (466)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~---i~~ 280 (466)
+++|||..+..|+.++ |+|+|+.. |++ +|||..+|||..+.+ ++|++|++||+|+.|. +++
T Consensus 286 qkGidp~sld~~a~~g------IlaLRRAK----RRN-mERL~lacGG~a~ns-----vddLtp~~LG~aglVye~tlGE 349 (520)
T KOG0359|consen 286 QKGIDPTSLDSLAKSG------ILALRRAK----RRN-MERLVLACGGEAVNS-----VDDLTPDYLGYAGLVYEYTLGE 349 (520)
T ss_pred ccCCCCCcchhhhhcc------hHHHHHHh----hhh-HHHHHHhhccceecc-----cccCChhhccccceeEEeeccc
Confidence 6799999999998754 88999983 555 999999999999986 8999999999999996 579
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-
Q 012313 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (466)
Q Consensus 281 ~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g- 359 (466)
++|||+++|++|. .|||+++|||++.+.+.++.++|++++++++++++
T Consensus 350 EkfTFIE~~~~p~-------------------------------S~TiLikgpnkht~tQikdairdglrav~ntl~d~~ 398 (520)
T KOG0359|consen 350 EKFTFIEKCNNPS-------------------------------SVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKC 398 (520)
T ss_pred eeeEeeecCCCCc-------------------------------ceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcc
Confidence 9999999999985 48999999999999999999999999999999998
Q ss_pred CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc-CCCCeeEeCCCCcccc
Q 012313 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ-DSSDLGYNPARGNYVD 436 (466)
Q Consensus 360 vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~-~~~~~G~d~~~~~~~d 436 (466)
++||+|+.|.+++..|+....+ +++.++|+++|++||..+|++|++|+|+|+.+. .+|.+. ....+|+|+.+|+..+
T Consensus 399 ~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~ 478 (520)
T KOG0359|consen 399 GIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECD 478 (520)
T ss_pred cccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccc
Confidence 9999999999999999977765 899999999999999999999999999999988 777553 2235699999999999
Q ss_pred ccccCCccccccHHHHHHHHHHHHHHHhc
Q 012313 437 MFKCGDVDPLKHVPSEFAKATSMISLKNA 465 (466)
Q Consensus 437 ~~~~gI~dp~~vk~~al~~A~~~A~~iL~ 465 (466)
....||||.+.||++.|.+++-+|+.+|.
T Consensus 479 ~~~~gi~Dny~v~~~~l~s~~via~nlLl 507 (520)
T KOG0359|consen 479 PSRKGIYDNYSVKKQLLRSEAVIATNLLL 507 (520)
T ss_pred hhhccccchHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999998874
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-55 Score=424.98 Aligned_cols=306 Identities=18% Similarity=0.185 Sum_probs=282.0
Q ss_pred cCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHhhhccccCC
Q 012313 15 INTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITT 93 (466)
Q Consensus 15 ~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~L~~~~~~v~~ 93 (466)
+||.+|.+ ..+|++||.++|||||.+++|++.+++++.+++. |+||..|..||+++...++++|.+++.+.+
T Consensus 71 d~~IakLm------v~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e- 143 (400)
T KOG0357|consen 71 VHQIAKLI------VILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE- 143 (400)
T ss_pred chHHHHHH------HHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-
Confidence 57778877 3678999999999999999999999999999999 999999999999999999999999887765
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCccccccccceeeecCceE
Q 012313 94 FEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALV 173 (466)
Q Consensus 94 ~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~~~~~~~~~l~~~~I 173 (466)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeE
Q 012313 174 LIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQV 253 (466)
Q Consensus 174 l~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i 253 (466)
|..+++.++++|.+|+||+|+|||+|-|+|..|++ -|||++|- -++|-||++|||++
T Consensus 144 ------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~l------pavrwVGG-----pEiEliAiaT~grI 200 (400)
T KOG0357|consen 144 ------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNL------PAVRWVGG-----PEIELIAIATGGRI 200 (400)
T ss_pred ------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCC------CceeecCC-----cceEEEEeecCCee
Confidence 55678889999999999999999999999998874 47999972 24999999999999
Q ss_pred eeCCCCCCcCCCCCCCceeeeEEEE-----ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEE
Q 012313 254 LTGGSGMNSTYFVPLKLGSCKRVIA-----TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVL 328 (466)
Q Consensus 254 ~~~~~~~~~~~~~~~~lG~~~~v~i-----~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI 328 (466)
+.+ ++++++++||+|+.|.. ++|+..+++.|++.++ .||
T Consensus 201 Vpr-----F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nska-------------------------------VTi 244 (400)
T KOG0357|consen 201 VPR-----FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKA-------------------------------VTI 244 (400)
T ss_pred ecc-----HhhhCHhhccccceEEEEecccccceEEEEEecCCCce-------------------------------EEE
Confidence 997 99999999999999853 4788999999998764 699
Q ss_pred EEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHh
Q 012313 329 KVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASN 406 (466)
Q Consensus 329 ~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~N 406 (466)
.|||+|+.+++|.+|++|||||++||.+++. +|+|||++|+.||-++.+-+.. ++.+||++++|++||++||..||+|
T Consensus 245 fvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaen 324 (400)
T KOG0357|consen 245 FVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAEN 324 (400)
T ss_pred EEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhc
Confidence 9999999999999999999999999999986 9999999999999999887776 9999999999999999999999999
Q ss_pred cCCChHHH-HHHHh----cCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 407 AGVDGSVI-DKLLE----QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 407 aG~d~~~i-~~l~~----~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+|++|++. +++++ ..++++|+|+....--||.+.+++||+..|++.+..|+.++.|||+|
T Consensus 325 sgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKi 389 (400)
T KOG0357|consen 325 SGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKI 389 (400)
T ss_pred cCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999 88876 25789999999888899999999999999999999999999999987
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.95 E-value=2.7e-27 Score=224.97 Aligned_cols=192 Identities=26% Similarity=0.341 Sum_probs=165.0
Q ss_pred HHHHHHHHHhcC-----CChhHHHHHHHHHHhhcc------CCceeee--cCCCccceeEeEeeEEEeccccCCcccccc
Q 012313 95 EEIAQVGTTAAN-----GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHK 161 (466)
Q Consensus 95 ~~l~~va~ts~~-----~~~~l~~li~~a~~~vg~------~~~I~i~--~g~~~~d~~~lv~G~~~~~~~~~~~~~~~~ 161 (466)
++|.++|+++++ .++.+++++++|+..+++ .+.|.++ +|++.. ++++++|++|+++|.+|+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~-ds~li~Gv~~~~~~~~~~m~--- 77 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLE-DSELVVGVVFDKGYASPYMP--- 77 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChh-hceeEeeEEEeccccCCCCC---
Confidence 468899999998 578899999999999987 3567775 566665 57899999999999999883
Q ss_pred ccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhH
Q 012313 162 NKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 241 (466)
Q Consensus 162 ~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ 241 (466)
..++||+|++++.+++. +++++++|++.++++|..+ +|+++++. ++++
T Consensus 78 ----~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~~-----~~~~ 125 (209)
T cd03333 78 ----KRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRRV-----KKED 125 (209)
T ss_pred ----eEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEeC-----CHHH
Confidence 47899999999999875 7777888999999988874 48999987 5777
Q ss_pred HHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHH
Q 012313 242 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRL 318 (466)
Q Consensus 242 le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl 318 (466)
|+|||++|||+++++ ++++++++||+|++|++. +++++++.++..+
T Consensus 126 l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------------- 174 (209)
T cd03333 126 LERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-------------------------- 174 (209)
T ss_pred HHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 999999999999997 788899999999999865 3457888877543
Q ss_pred hhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc
Q 012313 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (466)
Q Consensus 319 ~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~ 358 (466)
+.|||+|||+|+++++|.+|+++||++++++++++
T Consensus 175 -----~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 -----KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -----CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 46999999999999999999999999999999764
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.94 E-value=2e-25 Score=218.83 Aligned_cols=198 Identities=11% Similarity=0.148 Sum_probs=163.4
Q ss_pred ChhHHHHHHHHHHhhccC----------Cceeee--cCCCccceeEeEeeEEEeccccCCccccccccceeeecCceEEE
Q 012313 108 DGEIGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLI 175 (466)
Q Consensus 108 ~~~l~~li~~a~~~vg~~----------~~I~i~--~g~~~~d~~~lv~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~ 175 (466)
.+.|++++++|+..+..+ ..|++. +|++.. ++++++|+++++++.++.|+ ..++||+|++
T Consensus 20 ~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~-dS~li~Gvvi~k~~~~~~m~-------~~i~n~kIll 91 (261)
T cd03334 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPS-DSEVVDGVVFTKNVAHKRMP-------SKIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHH-HcEEEeeEEEeCCCCCccCC-------cccCCCcEEE
Confidence 467999999999987522 125554 687775 68999999999998887663 3788999999
Q ss_pred eccccCCH-----------------HHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccch
Q 012313 176 YDTKISNS-----------------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDR 238 (466)
Q Consensus 176 ~d~~i~~~-----------------~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r 238 (466)
++.+++.. +.+..++++++..|.++++++++|++.++++|..+ +|++++++ +
T Consensus 92 l~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~~v-----~ 160 (261)
T cd03334 92 LQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVLNV-----K 160 (261)
T ss_pred EeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEEec-----C
Confidence 99876431 13456788899999999999999999999998875 48999998 4
Q ss_pred hhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe---c-----ceEEEEcCCCChhhHHHHHHHHHHHhhhcc
Q 012313 239 KAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---M-----DNVVIIGGSGELVDIQERCEQLRSTIKLST 310 (466)
Q Consensus 239 ~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~---~-----~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~ 310 (466)
+++|++||++|||+++++. .+++++++||+|++|++. + +++++|++|+.+
T Consensus 161 ~~dl~rIa~~tGa~ii~~i----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~------------------ 218 (261)
T cd03334 161 PSVLERISRCTGADIISSM----DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE------------------ 218 (261)
T ss_pred HHHHHHHHHHhCCEEecCh----hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC------------------
Confidence 6779999999999999962 247888999999999753 3 479999998754
Q ss_pred hHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC
Q 012313 311 SDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (466)
Q Consensus 311 s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g 359 (466)
+.+||+|||+|++.++|.+|+++||+++++++..+.
T Consensus 219 -------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 -------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred -------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 358999999999999999999999999999987764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.72 E-value=1.5e-07 Score=107.14 Aligned_cols=186 Identities=12% Similarity=0.209 Sum_probs=136.1
Q ss_pred eeee--cCCCccceeEeEeeEEEeccccCCccccccccceeeecCceEEEecccc---------CCH--------HHHHH
Q 012313 128 ITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI---------SNS--------NVIRQ 188 (466)
Q Consensus 128 I~i~--~g~~~~d~~~lv~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i---------~~~--------~~i~~ 188 (466)
+.++ .+|+. .+++++.|+++.+-..+-.|.+ ++++|+|++..+.+ .+. +.+..
T Consensus 364 VkvK~I~~g~~-~dS~vi~Gvv~sKn~~~k~M~~-------~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~ 435 (1598)
T KOG0230|consen 364 VKVKCVAGGSR-VDSEVIKGVVCSKNVAHKRMAT-------KYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKK 435 (1598)
T ss_pred eEEEEecCCCc-ccceeeeEEEeecchhhhhhhh-------hccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHH
Confidence 5554 56664 4689999999998877665543 67789998887642 222 23444
Q ss_pred HHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCC
Q 012313 189 ASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPL 268 (466)
Q Consensus 189 ~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~ 268 (466)
.+..|.....+++.+.+++++.|..+|-. ++ |..+= +.+...|+||++.|||.|+.+ ++.++..
T Consensus 436 ~varI~s~~p~vllVeksVS~~aqe~L~~---k~---I~lvl-----nvK~s~leRIsR~tga~I~~s-----iDslt~~ 499 (1598)
T KOG0230|consen 436 VVARIESLRPDVLLVEKSVSRIAQELLLD---KG---ISLVL-----NVKRSLLERISRCTGADIVPS-----VDSLTSQ 499 (1598)
T ss_pred HHHHHHhcCCCeEEEechHHHHHHHHhhc---cC---eEEEE-----eccHHHHHHHHHHhcCceecc-----hhhhhcc
Confidence 55556556667889999999999987774 33 22222 224556999999999999986 7778889
Q ss_pred CceeeeEEEEe--------cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHH
Q 012313 269 KLGSCKRVIAT--------MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVRE 340 (466)
Q Consensus 269 ~lG~~~~v~i~--------~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E 340 (466)
.||+|+.+++. .....||+||+.+. -|||++||++..++.+
T Consensus 500 klg~C~~F~v~~~~e~hk~sKTlmffegc~~~l-------------------------------G~TiLLrG~~~~eLkk 548 (1598)
T KOG0230|consen 500 KLGYCELFRVENYVEEHKPSKTLMFFEGCPKPL-------------------------------GCTILLRGDSLEELKK 548 (1598)
T ss_pred ccCCCccHhhhhhhhcccchhhhHHhhcCCCCC-------------------------------CceEEecCCCHHHHHH
Confidence 99999998753 22357888987653 3899999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHcCCcCCchHHH
Q 012313 341 KKLKITNALHAVQ-AAKEEGIVPGSGVAL 368 (466)
Q Consensus 341 ~~r~l~Dal~a~r-~a~~~gvVpGGGa~e 368 (466)
+++-+.-++-++- .+++.-|+.-=|+..
T Consensus 549 VK~Vvq~~v~aay~l~LE~SflaDe~asi 577 (1598)
T KOG0230|consen 549 VKHVVQYLVFAAYHLALETSFLADEGASI 577 (1598)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCcc
Confidence 9999998888876 446655666555543
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00015 Score=78.06 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCCC-EEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHH-HHHHHHhCCeEeeCCCCCCcC
Q 012313 186 IRQASLPCMMQGQS-LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM-EDLAILTGGQVLTGGSGMNST 263 (466)
Q Consensus 186 i~~~l~~i~~~~~~-lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~l-e~la~~tG~~i~~~~~~~~~~ 263 (466)
+..+++.+.+.|.+ ++|++++|+|.+.++|..+ .|++++++. ++++ ++|+.+|||++++. ++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~~v~-----~~dl~~~l~~~~ga~~v~~-----~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGRRVK-----KEDLGERLAKLGGAKIVSV-----LK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceecceec-----chhhHHHHHHccCceEEee-----cc
Confidence 44556677889999 8899999999999999875 488999984 5668 79999999999996 89
Q ss_pred CCCCCCcee--eeEEEE---ecceEEEEcCCC
Q 012313 264 YFVPLKLGS--CKRVIA---TMDNVVIIGGSG 290 (466)
Q Consensus 264 ~~~~~~lG~--~~~v~i---~~~~~~~~~~~~ 290 (466)
+.++.++|. |+.|+. ++++++++.++.
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~ 354 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERK 354 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhh
Confidence 999999999 999874 344566666554
No 47
>smart00574 POX domain associated with HOX domains.
Probab=52.60 E-value=28 Score=30.82 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHhh
Q 012313 337 EVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL 378 (466)
Q Consensus 337 ~l~E~~r~l~Dal~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~ 378 (466)
.++|++++++--..-++....+- .|+|.|++-.+.+-+|+..
T Consensus 85 mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~ 127 (140)
T smart00574 85 MLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTI 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 78888888888888777776664 7899998888877776543
No 48
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=42.13 E-value=68 Score=25.95 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=33.5
Q ss_pred HHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCe
Q 012313 189 ASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (466)
Q Consensus 189 ~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~ 252 (466)
-++.+.+....+|++++|+++.....+..--.+ .+|-.+-.++ .++|-++||-.
T Consensus 21 t~Kai~kg~~~~v~iA~Da~~~vv~~l~~lcee--k~Ip~v~V~s--------~~~LGkAcgi~ 74 (84)
T PRK13600 21 TLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQ--KNIPVSFFKS--------KHALGKHVGIN 74 (84)
T ss_pred HHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEECC--------HHHHHHHhCCC
Confidence 445555566789999999999887655432111 2233344442 57788888754
No 49
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=41.67 E-value=42 Score=29.89 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHhh
Q 012313 337 EVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL 378 (466)
Q Consensus 337 ~l~E~~r~l~Dal~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~ 378 (466)
.++|++|+++--..=++....+. -|.|.|++-.+.+-+|+..
T Consensus 85 mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqam 127 (140)
T PF07526_consen 85 MLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAM 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 78888888887777777666664 7889998888877777544
No 50
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=29.89 E-value=20 Score=38.86 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=48.6
Q ss_pred cCCCEEEEecccch-----hhhhhHHhhhccCC----CceEEEEecCcccchhhHHHHHHHHhCCeEeeC
Q 012313 196 QGQSLLVVAEDVEN-----EVLGDIATDFTCTT----EKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 256 (466)
Q Consensus 196 ~~~~lvIi~~~i~~-----~al~~l~~n~~~~~----~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~ 256 (466)
...|+.|..+++++ +++..+..|+.++. .++++++.+ +++.+...|++..++++.++...
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~ 314 (522)
T TIGR02345 246 EKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDE 314 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHH
Confidence 34578888999988 88888888776653 388999888 99999999999999999876654
No 51
>PRK06683 hypothetical protein; Provisional
Probab=28.48 E-value=1.5e+02 Score=23.74 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=33.1
Q ss_pred HHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeE
Q 012313 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQV 253 (466)
Q Consensus 190 l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i 253 (466)
++.+.+....+||+++|.++.....+..- ....+|-.+..+. .++|..+||-.+
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~--~~~~~Vpv~~~~t--------~~eLG~A~G~~~ 73 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRT--ALQHNIPITKVES--------VRKLGKVAGIQV 73 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHH--HHhcCCCEEEECC--------HHHHHHHhCCcc
Confidence 44454555679999999999877655421 1112344444432 578888888643
No 52
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=27.37 E-value=1.3e+02 Score=32.69 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=23.3
Q ss_pred HHHHhhccCCceeeecCCCccceeEeE--eeEEEeccccCCcccc
Q 012313 117 KVFEKGWENDLITIFDRKALYNELNFV--KGMKLEWGLKSPYFFT 159 (466)
Q Consensus 117 ~a~~~vg~~~~I~i~~g~~~~d~~~lv--~G~~~~~~~~~~~~~~ 159 (466)
+++..++.++.+.++.+... +.+++. .|..++.+|+.|+|..
T Consensus 168 ~~~s~l~~~av~~i~~~~~~-~~i~i~k~~G~s~~~s~l~~G~v~ 211 (519)
T TIGR02341 168 DHFAQLAVDAVLRLKGSGNL-DAIQIIKKLGGSLNDSYLDEGFLL 211 (519)
T ss_pred HHHHHHHHHHHHHhccCCCh-hheEEEEccCCCcccceEEeeEEE
Confidence 34444444455555443333 346666 3777777777777643
No 53
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=25.73 E-value=33 Score=36.51 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcC
Q 012313 342 KLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT 380 (466)
Q Consensus 342 ~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~ 380 (466)
+|.+.||+..+|++.+.=+|.|||+-+-.+..+|..|+.
T Consensus 216 ~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E 254 (617)
T COG3962 216 ERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAE 254 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHH
Confidence 456788999999986656999999988888888887763
No 54
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.26 E-value=1.9e+02 Score=23.09 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=30.6
Q ss_pred HHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCe
Q 012313 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (466)
Q Consensus 190 l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~ 252 (466)
++.+.+....+||+++|.++.....+.. ..+ ..+|-.+..++ -++|..++|-.
T Consensus 20 ~kai~~gkaklViiA~D~~~~~~~~i~~-~c~-~~~Vp~~~~~s--------~~eLG~a~G~~ 72 (82)
T PRK13602 20 VKALKRGSVKEVVVAEDADPRLTEKVEA-LAN-EKGVPVSKVDS--------MKKLGKACGIE 72 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHH-HHH-HcCCCEEEECC--------HHHHHHHHCCC
Confidence 4444445567999999999976543321 111 12333444432 46888888854
No 55
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=24.20 E-value=4.2e+02 Score=22.02 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCCEEEEec-ccchhhhhhHHhhh-ccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeC
Q 012313 187 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATDF-TCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 256 (466)
Q Consensus 187 ~~~l~~i~~~~~~lvIi~~-~i~~~al~~l~~n~-~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~ 256 (466)
..+|....-.=.|+|.+.+ ++++.++..+-..- -+..++|=+.+ .-.+.+++..+.||..||+.++..
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~--~~~~~~~e~~~~i~~~~~ae~Vq~ 77 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIAT--EDRETKTLIVEAIVRETGACNVQV 77 (97)
T ss_pred HHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecC--CChhHHHHHHHHHHHHHCCEEEee
Confidence 4466665555579998865 99998887554321 11112333221 123446777899999999988863
No 56
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=23.62 E-value=2.1e+02 Score=22.97 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=31.5
Q ss_pred HHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCe
Q 012313 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (466)
Q Consensus 190 l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~ 252 (466)
++.+.+....|||++.|.++.....+..- ....+|-.+... ..++|..++|-.
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~--c~~~~Vpv~~~~--------t~~eLG~A~G~~ 69 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKEL--CEEKSIKIVYID--------TMKELGVMCGID 69 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHH--HHhCCCCEEEeC--------CHHHHHHHHCCc
Confidence 44555556789999999998776655421 111223333322 257888888854
No 57
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=22.90 E-value=2.5e+02 Score=22.37 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCEEEEec-ccchhhhhhHHhhhccCCCceEEEEecC-cccchhhHHHHHHHHhCCeEeeC
Q 012313 189 ASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAAG-LAEDRKAIMEDLAILTGGQVLTG 256 (466)
Q Consensus 189 ~l~~i~~~~~~lvIi~~-~i~~~al~~l~~n~~~~~~~i~avk~~~-~g~~r~~~le~la~~tG~~i~~~ 256 (466)
+|......-.|++.+.+ ++++.++..+-..-.. ..++=||..+ ..+.+++..+.|+..|||.++..
T Consensus 8 ~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~--~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 8 FLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEK--HELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHH--HSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHh--CCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 45555555568887765 8888888755432111 1355566655 23335667889999999998863
No 58
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=21.64 E-value=1.4e+02 Score=24.66 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHH
Q 012313 399 AAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMIS 461 (466)
Q Consensus 399 ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~ 461 (466)
+-..|..|.++.=..+ ++|.. ++|+| ++.-++...||||...-.++...+..-++
T Consensus 30 fN~~L~~s~~frNP~i~ekLi~----~~~Id----e~gTn~p~~i~dP~~~~~~~y~e~L~k~Q 85 (96)
T PF07818_consen 30 FNDRLQNSKSFRNPSILEKLIE----FFGID----EYGTNFPKDIFDPHGFPEEDYYEELAKAQ 85 (96)
T ss_pred HHHHHHHccccCChHHHHHHHH----HcCCC----cccCCCChhhcCCCCCCHHHHHHHHHHHH
Confidence 3345667766554455 77754 36777 36667788899999999999888876554
No 59
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=21.29 E-value=2.7e+02 Score=22.29 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=33.1
Q ss_pred HHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCe
Q 012313 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (466)
Q Consensus 190 l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~ 252 (466)
.+.+.+....++|++.|+++.....+.....+ ..+|-.+..++ -++|..++|-.
T Consensus 24 ~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~-~~~Ip~~~~~s--------~~eLG~~~g~~ 77 (95)
T PF01248_consen 24 LKALKKGKAKLVILAEDCSPDSIKKHLPALCE-EKNIPYVFVPS--------KEELGRACGKK 77 (95)
T ss_dssp HHHHHTTCESEEEEETTSSSGHHHHHHHHHHH-HTTEEEEEESH--------HHHHHHHTTSS
T ss_pred HHHHHcCCCcEEEEcCCCChhhhcccchhhee-ccceeEEEECC--------HHHHHHHHCCC
Confidence 44444455679999999999887652211111 13455566552 46888888854
No 60
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=20.98 E-value=1.4e+02 Score=26.59 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCC
Q 012313 187 RQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGG 257 (466)
Q Consensus 187 ~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~ 257 (466)
...++.+.+.|+|++| +-|+.+. | +..+.|+.++||.++.+.
T Consensus 66 ~evi~~I~~~G~PviV-AtDV~p~---------------------P-------~~V~Kia~~f~A~ly~P~ 107 (138)
T PF04312_consen 66 SEVIEWISEYGKPVIV-ATDVSPP---------------------P-------ETVKKIARSFNAVLYTPE 107 (138)
T ss_pred HHHHHHHHHcCCEEEE-EecCCCC---------------------c-------HHHHHHHHHhCCcccCCC
Confidence 3567888899999776 3344321 2 237899999999999874
No 61
>PLN02512 acetylglutamate kinase
Probab=20.94 E-value=2.1e+02 Score=28.81 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=27.3
Q ss_pred HhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC--CcCCchH
Q 012313 318 LAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG--IVPGSGV 366 (466)
Q Consensus 318 l~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g--vVpGGGa 366 (466)
|.+++|++..|.++|+.-..- +...++.+.+...+. .-.. +|.|||.
T Consensus 42 i~~~~~~tiVIKlGGs~i~d~-~~~~~~~~di~~l~~-~g~~iVlVHGgG~ 90 (309)
T PLN02512 42 IQRFRGKTVVVKYGGAAMKDP-ELKAGVIRDLVLLSC-VGLRPVLVHGGGP 90 (309)
T ss_pred HHHHCCCeEEEEECCeeccCh-hHHHHHHHHHHHHHH-CCCCEEEEECCcH
Confidence 456788999999999773221 222334334433321 1112 6899998
Done!