Query 012313
Match_columns 466
No_of_seqs 115 out of 1346
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 06:58:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rtk_A 60 kDa chaperonin 2; he 100.0 2E-105 6E-110 852.4 39.6 453 5-466 52-514 (546)
2 1kp8_A Groel protein; chaperon 100.0 5E-104 2E-108 842.9 43.2 455 5-466 52-516 (547)
3 1we3_A CPN60(groel); chaperoni 100.0 4E-103 1E-107 836.7 46.1 455 5-466 52-518 (543)
4 1iok_A Chaperonin 60; chaperon 100.0 5E-104 2E-108 843.4 36.6 456 5-466 53-518 (545)
5 3p9d_C T-complex protein 1 sub 100.0 7.6E-90 2.6E-94 739.1 30.2 431 5-466 61-579 (590)
6 3iyg_H T-complex protein 1 sub 100.0 1.4E-87 4.7E-92 714.6 39.9 404 5-466 53-507 (515)
7 3ruv_A Chaperonin, CPN; double 100.0 1E-87 3.6E-92 719.7 38.9 401 5-466 61-512 (543)
8 3ko1_A Chaperonin; 9-fold symm 100.0 8.3E-88 2.8E-92 720.8 37.5 401 5-466 72-526 (553)
9 3aq1_B Thermosome subunit; gro 100.0 1.4E-87 4.7E-92 712.8 38.1 401 5-466 15-469 (500)
10 3iyg_B T-complex protein 1 sub 100.0 3.3E-87 1.1E-91 711.8 40.8 400 5-466 54-504 (513)
11 3p9d_A T-complex protein 1 sub 100.0 7.4E-88 2.5E-92 722.6 32.9 406 5-466 66-541 (559)
12 3iyg_A T-complex protein 1 sub 100.0 1.1E-86 3.7E-91 710.3 39.3 406 5-466 52-521 (529)
13 1q3q_A Thermosome alpha subuni 100.0 1E-86 3.4E-91 712.8 38.4 401 5-466 65-518 (548)
14 1a6d_A Thermosome (alpha subun 100.0 9.2E-87 3.2E-91 712.7 37.9 400 5-466 64-515 (545)
15 3iyg_E T-complex protein 1 sub 100.0 3.5E-86 1.2E-90 704.7 40.9 408 5-466 52-508 (515)
16 3p9d_D T-complex protein 1 sub 100.0 1.8E-87 6.1E-92 715.7 30.9 405 5-466 61-521 (528)
17 1a6d_B Thermosome (beta subuni 100.0 1.3E-86 4.3E-91 711.9 36.9 401 5-466 63-516 (543)
18 3iyg_D T-complex protein 1 sub 100.0 4.6E-86 1.6E-90 703.9 39.3 401 5-466 53-511 (518)
19 3iyg_Q T-complex protein 1 sub 100.0 3E-85 1E-89 697.1 39.9 407 5-466 53-505 (512)
20 3iyg_G T-complex protein 1 sub 100.0 5.9E-85 2E-89 694.9 39.9 401 5-466 51-507 (515)
21 3p9d_E T-complex protein 1 sub 100.0 1E-85 3.6E-90 706.4 33.1 407 5-466 87-551 (562)
22 3iyg_Z T-complex protein 1 sub 100.0 5.6E-85 1.9E-89 694.9 36.8 400 5-466 52-510 (517)
23 3p9d_G T-complex protein 1 sub 100.0 1.9E-86 6.7E-91 710.4 25.6 403 5-466 66-520 (550)
24 3p9d_B T-complex protein 1 sub 100.0 6.1E-86 2.1E-90 704.7 26.9 400 5-466 60-511 (527)
25 3p9d_F T-complex protein 1 sub 100.0 4.4E-84 1.5E-88 692.6 27.1 401 5-466 59-530 (546)
26 3p9d_H T-complex protein 1 sub 100.0 7.9E-84 2.7E-88 692.6 19.2 401 5-466 68-541 (568)
27 3m6c_A 60 kDa chaperonin 1; ch 100.0 2.1E-47 7E-52 346.9 14.9 189 140-328 2-194 (194)
28 3osx_A 60 kDa chaperonin; alph 100.0 6.4E-46 2.2E-50 337.7 16.3 185 143-327 12-200 (201)
29 1srv_A Protein (groel (HSP60 c 100.0 5.2E-37 1.8E-41 266.5 14.9 144 145-288 1-144 (145)
30 1gml_A T-complex protein 1 sub 99.9 4.6E-22 1.6E-26 183.0 13.2 144 139-336 3-174 (178)
31 1ass_A Thermosome; chaperonin, 99.8 1.2E-18 4.3E-23 157.1 13.1 127 143-292 1-154 (159)
32 2lnd_A De novo designed protei 25.8 2.1E+02 0.0071 21.9 6.5 51 181-232 35-86 (112)
No 1
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=100.00 E-value=1.8e-105 Score=852.42 Aligned_cols=453 Identities=32% Similarity=0.478 Sum_probs=424.0
Q ss_pred HHHhhccccccCcc----ccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTT----GTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (466)
Q Consensus 5 ~~~il~~~~~~~p~----~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~ 79 (466)
..||||+|+++||+ ||++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||++|++.
T Consensus 52 G~TIlk~i~v~hp~~n~gAkll------~e~a~~qd~e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~ 125 (546)
T 3rtk_A 52 GVSIAKEIELEDPYEKIGAELV------KEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEK 125 (546)
T ss_dssp ---------CCCHHHHHHHHHH------HHHHTSCC-------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCChhhhHHHHHH------HHHHHhhhhhhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 46899999999999 7777 6889999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccc
Q 012313 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (466)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~ 159 (466)
++++|+++++|+++.++|.++|++|++ ++.+++++++|+.+++.++.|+|+++++..+++++++||+|+++|.||||++
T Consensus 126 a~e~L~~~s~~v~~~e~L~~vA~iS~~-~~~i~~liadAv~~V~~dgvI~Ve~~~~~~~ds~lveGm~fdkg~~sp~~vt 204 (546)
T 3rtk_A 126 VTETLLKGAKEVETKEQIAATAAISAG-DQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVT 204 (546)
T ss_dssp HHHHHHHTCBCCCSHHHHHHHHHHHHT-CHHHHHHHHHHHHHSCTTSEEEEECCSSSSCEEEEECEEEESCCBSSGGGCS
T ss_pred HHHHHHHhcccCCChHHHHhHeEEeCC-chHHHHHHHHHHHHhccCCceEEEecCCcccceEEeeeEEEcCCccCccccc
Confidence 999999999999989999999999998 8899999999999999999999998888778899999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchh
Q 012313 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (466)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (466)
++++++.+++||+|+++|.+|+++++++|+++++.++|+||||++++|+++++++|+.|+++|.++|++||.|+||+.|+
T Consensus 205 ~~e~m~~~len~kIll~d~kIs~~~~l~~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk 284 (546)
T 3rtk_A 205 DPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRK 284 (546)
T ss_dssp BTTTTBEEEESCEEEEBSSEECCSTTTHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHH
T ss_pred CcccCeeEecccEEEEECCccCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012313 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (466)
Q Consensus 240 ~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (466)
++|+|||++|||+++++++|++++++++++||+|++|++++++++||+||++++.++.|+++|++++++++| |+|+
T Consensus 285 ~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~ 364 (546)
T 3rtk_A 285 AMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQ 364 (546)
T ss_dssp HHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEEECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred hhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEEEcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888 9999
Q ss_pred HHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012313 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (466)
Q Consensus 316 ~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 395 (466)
|||++|+|++|||+|||+|+++++|++|+++||||++|+++++|+|||||++|+++|.+|++++ .++++|+|+++|++|
T Consensus 365 erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~giVpGGGa~e~~~s~~L~~~~-~~g~eq~~i~~~a~A 443 (546)
T 3rtk_A 365 ERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTLLQAAPTLDELK-LEGDEATGANIVKVA 443 (546)
T ss_dssp HHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHCEEETTTHHHHTTGGGSTTSC-CCTTHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccCCcHHHHHHHHHHHHhc-cccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 789999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 396 L~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|+.||++||+|||+|+.++ ++|++. ...+|||+.+|++.||+++|||||+.||+++|++|+|+|++||+|
T Consensus 444 Le~ip~~La~NaG~d~~~vv~~l~~~-~~~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~i 514 (546)
T 3rtk_A 444 LEAPLKQIAFNSGLEPGVVAEKVRNL-PAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTT 514 (546)
T ss_dssp TTHHHHHHHTTTTCCHHHHHHHHHHS-CTTEECCSSSCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhh-cCCEeEcCCCCcEeeHHHcCCEecHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999885 345999999999999999999999999999999999999999986
No 2
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=100.00 E-value=5.3e-104 Score=842.93 Aligned_cols=455 Identities=34% Similarity=0.500 Sum_probs=441.8
Q ss_pred HHHhhccccccCc----cccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (466)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~ 79 (466)
..||||+|+++|| +||++ +++|++||+++||||||+||||++||+++.+++. |+||+.|++||++|++.
T Consensus 52 G~tIlk~i~~~hp~en~~Akll------~e~a~~qd~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~ 125 (547)
T 1kp8_A 52 GVSVAREIELEDKFENMGAQMV------KEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTV 125 (547)
T ss_dssp HHHHHHHCCCSSHHHHHHHHHH------HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccChhhhHHHHHH------HHHHHhhccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 4699999999999 99998 6889999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccc
Q 012313 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (466)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~ 159 (466)
++++|+++++|+++.++|.++|++|+++++++++++++|+.+++.++.|+|++|++++|++++++|++|+++|.+|||.+
T Consensus 126 a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~~liadAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt 205 (547)
T 1kp8_A 126 AVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFIN 205 (547)
T ss_dssp HHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCS
T ss_pred HHHHHHHhCcCCCCHHHHHHHHHHhccchhHHHHHHHHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCcccccccc
Confidence 99999999999998899999999999889999999999999999999999999999988779999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchh
Q 012313 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (466)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (466)
++++++.+++||+|+++|.+|+++++++|+++++.++|+||||++++|+++++++|+.|+++|.++|+|||.|+||+.|+
T Consensus 206 ~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk 285 (547)
T 1kp8_A 206 KPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRK 285 (547)
T ss_dssp BTTTTBEEEESCEEECEESEECCGGGTHHHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHH
T ss_pred CcccCceEecCceEEEEcCcCCCHHHHHHHHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012313 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (466)
Q Consensus 240 ~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (466)
++|+|||++|||++++++.|++++++++++||+|++|++++++|+||+||+++++++.|+++|+.++++++| |+|+
T Consensus 286 ~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~ 365 (547)
T 1kp8_A 286 AMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQ 365 (547)
T ss_dssp HHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHH
T ss_pred HHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEEccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHH
Confidence 999999999999999998888999999999999999999999999999999999999999999999999888 9999
Q ss_pred HHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012313 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (466)
Q Consensus 316 ~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 395 (466)
||++||+|+.|||+|||+|+++++|++|+++||+|++|+++++|+|||||++|++++.+|++++..++++|+++++|++|
T Consensus 366 erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~giVpGGGa~e~~~s~~L~~~~~~~g~~q~~i~~~a~A 445 (547)
T 1kp8_A 366 ERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNADQNVGIKVALRA 445 (547)
T ss_dssp HHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHCEEETTTHHHHHHHHHTTTCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCCEEeCCcHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998876688999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 396 L~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|+.||++||+|||+|+.++ ++|++. ++++|||+.+|++.||++.|||||+.||+++|++|+|+|++||+|
T Consensus 446 Le~ip~~la~NaG~d~~~vv~~l~~~-~~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~i 516 (547)
T 1kp8_A 446 MEAPLRQIVLNCGEEPSVVANTVKGG-DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITT 516 (547)
T ss_dssp TTHHHHHHHHHHTSCHHHHHHHHHHS-CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhc-CCCEeEeCCCCccccchhcCceechHhHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999 999875 578999999999999999999999999999999999999999986
No 3
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=100.00 E-value=4.3e-103 Score=836.69 Aligned_cols=455 Identities=35% Similarity=0.523 Sum_probs=441.7
Q ss_pred HHHhhccccccCc----cccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (466)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~ 79 (466)
..||||+|+++|| +||++ +++|++||+++||||||+||||++||+++.+++. |+||+.|++||++|++.
T Consensus 52 G~tIlk~i~~~hp~en~~Akll------~e~a~~qd~e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~ 125 (543)
T 1we3_A 52 GVTVAKEVELEDHLENIGAQLL------KEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEA 125 (543)
T ss_dssp HHHHHHHCCCSSHHHHHHHHHH------HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCChHHhHHHHHH------HHHHHhhheecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 4699999999999 99998 6889999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccc
Q 012313 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (466)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~ 159 (466)
++++|+++++|+++.++|.++|++|++ ++.+++++++|+.+++.++.|+|++|++++|++++++|++|+++|.+|||.+
T Consensus 126 a~~~L~~~s~~v~~~~~l~~vA~iS~~-~~~i~~li~dAv~~V~~~g~I~Ve~G~~~~ds~~lv~G~~~dkg~~~p~~vt 204 (543)
T 1we3_A 126 AVEKIKALAIPVEDRKAIEEVATISAN-DPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVT 204 (543)
T ss_dssp HHHHHHHTCBCCCSHHHHHHHHHHHHT-CHHHHHHHHHHHHTTCTTSEEEEEECSSSSCEEEEECSEEESCCBSSGGGCS
T ss_pred HHHHHHHhcccCCCHHHHHHhhhhhcC-CHHHHHHHHHHHHHhCcCCcEEEecCCccccceEEEcCEEEecCcccccccc
Confidence 999999999999988999999999998 8999999999999999999999999999988779999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchh
Q 012313 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (466)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (466)
++++++.+++||+|+++|.+|+++++++++++++.++|+||||++++|+++++++|+.|++++.++|+|||.|+||+.|+
T Consensus 205 ~~~~m~~~~en~~Ill~d~~Is~~~~l~~~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~ 284 (543)
T 1we3_A 205 NPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRK 284 (543)
T ss_dssp BTTTTBCCEEEEEEEEESSCBCCHHHHHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHH
T ss_pred CcccCceeecCceEEEECCCcCCHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012313 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (466)
Q Consensus 240 ~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (466)
++|+|||++|||++++++.|++++++++++||+|++|++++++++|++||+++++++.|+++|+.+++.++| ++|+
T Consensus 285 ~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~e~l~ 364 (543)
T 1we3_A 285 EMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQ 364 (543)
T ss_dssp HHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHHHHHHHH
T ss_pred HHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEEEcCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchhHHHHHH
Confidence 999999999999999999899999999999999999999999999999999999999999999999999888 9999
Q ss_pred HHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHH
Q 012313 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQN 394 (466)
Q Consensus 316 ~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~ 394 (466)
||++||+|+.|||+|||+|+++++|++|+++||+|++|+++++|+|||||++|++++.+|++++.+ ++++|+++++|++
T Consensus 365 erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~giVpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ 444 (543)
T 1we3_A 365 ERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRR 444 (543)
T ss_dssp HHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHCEEETTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCccHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999875 8999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHH-HHHHhc-CCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 395 ALKMAAYLIASNAGVDGSVI-DKLLEQ-DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 395 AL~~ip~~La~NaG~d~~~i-~~l~~~-~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
||+.||++||+|||+|+.++ ++|++. +++++|||+.+|++.||++.|||||+.||+++|++|+|+|++||+|
T Consensus 445 ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~i 518 (543)
T 1we3_A 445 ALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTT 518 (543)
T ss_dssp HTTHHHHHHHHHHTSCHHHHHHHHHHCCSCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHhcCCCCEEEeCCCCeecccccCCcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999873 4578999999999999999999999999999999999999999986
No 4
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=100.00 E-value=5.2e-104 Score=843.40 Aligned_cols=456 Identities=36% Similarity=0.535 Sum_probs=400.1
Q ss_pred HHHhhccccccCc----cccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (466)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~ 79 (466)
..||||+|+++|| +||++ +++|++||+++||||||+||||++||+++.+++. |+||+.|++||++|++.
T Consensus 53 G~tIlk~i~~~hp~en~~Akll------~e~a~~qd~e~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~ 126 (545)
T 1iok_A 53 GVSVAKEIELSDKFENMGAQMV------REVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAK 126 (545)
T ss_dssp HHHHHHHCCCSSHHHHHHHHHH------HHHHHHGGGGCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhHHHHHHH------HHHHHhhccccCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 4699999999999 99998 6889999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCCccceeEeEeeEEEeccccCCcccc
Q 012313 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (466)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~a~~~vg~~~~I~i~~g~~~~d~~~lv~G~~~~~~~~~~~~~~ 159 (466)
++++|+++++|+++.++|.++|++|+++++.+++++++|+.+++.++.|+|++|++++|++++++|++|+++|.+|||.+
T Consensus 127 a~~~L~~~s~~v~~~e~l~~va~iS~~~~~~i~~li~dAv~~V~~~g~I~Ve~G~~~~ds~~lveG~~~dkg~~~p~~vt 206 (545)
T 1iok_A 127 VVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVT 206 (545)
T ss_dssp HHHHHHTTCBCCCSTTTTTHHHHHTTTTCHHHHHHHHHHHHHHCTTSCCCCEECSSSCCEEEEECCEECSCCCSCGGGCC
T ss_pred HHHHHHHhcccCCCHHHHHHHHHhhcCCchhHHHHHHHHHHHhccCCeEEEEeCCccccceEEEecEEEecCcccccccc
Confidence 99999999999988889999999999889999999999999999999999999999988779999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchh
Q 012313 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (466)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (466)
+|++++.+++||+|+++|.+|+++++++++++++.++|+||||++++|+++++++|+.|+++|.++|+|||.|+||+.|+
T Consensus 207 ~~~~m~~~~en~~Ill~d~~I~~~~~l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~ 286 (545)
T 1iok_A 207 NADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRK 286 (545)
T ss_dssp CSSSSCEEEEEEEEEECSSCBCCCCC-----------CCCCEEEESCBC-----------------CEEEECSCCTTHHH
T ss_pred CcccCceeecCCeEEEEcCCcCCHHHHHHHHHHHHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEecchhhhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012313 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (466)
Q Consensus 240 ~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (466)
++|+|||++|||+++++++|++++++++++||+|++|++++++|+||+||+++++++.|+++++.+++.++| |+|+
T Consensus 287 ~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~ 366 (545)
T 1iok_A 287 AMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQ 366 (545)
T ss_dssp HHHHHHHHHHTC---------------CTTSEEEEEEEECSSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSSHHHHHH
T ss_pred HHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888 9999
Q ss_pred HHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012313 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (466)
Q Consensus 316 ~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 395 (466)
||++||+|+.|||+|||+|+++++|++|+++||+|++|+++++|+|||||++|++++.+|++++..++++|+++++|++|
T Consensus 367 erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~giVpGGGa~e~~~s~~L~~~~~~~g~~q~~i~~~a~A 446 (545)
T 1iok_A 367 ERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRA 446 (545)
T ss_dssp HHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHCEEETTTHHHHHHGGGGGSCCCSSHHHHHHHHHHHHH
T ss_pred HHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998875688999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 396 L~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|+.||++||+|||+|+.++ ++|++..++++|||+.+|++.||++.|||||+.||+++|++|+|+|++||+|
T Consensus 447 Le~ip~~La~NaG~d~~~vv~~l~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~i 518 (545)
T 1iok_A 447 LEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITT 518 (545)
T ss_dssp TTHHHHHHHHHHTSCHHHHHHHHHSCCSTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCCCCcccchHhcCcEEccHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999 9998754678999999999999999999999999999999999999999986
No 5
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=100.00 E-value=7.6e-90 Score=739.06 Aligned_cols=431 Identities=13% Similarity=0.147 Sum_probs=361.0
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhh-cc-CCChHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKA-LG-RANLTGLTQGFRMAADAVVR 82 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~l-i~-g~~P~~I~~G~~~a~~~~~~ 82 (466)
..|||++|+++||+||++ +++|++||+++||||||+||||++||++|.++ ++ |+||+.|++||++|++.+++
T Consensus 61 G~TIlk~i~~~hP~Akll------~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~ 134 (590)
T 3p9d_C 61 GHAILREIDVAHPAAKSM------LELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALE 134 (590)
T ss_dssp HHHHHHHSCCCCHHHHTH------HHHTTTHHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHH------HHHHHhhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 58899999999999999999999999999999 99 99999999999999999999
Q ss_pred HHhhhccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCCc----------------eeee--cCCCc
Q 012313 83 NLDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWENDL----------------ITIF--DRKAL 136 (466)
Q Consensus 83 ~L~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~~~----------------I~i~--~g~~~ 136 (466)
+|+++++|++ +.+.|.++|+||+++ ++.|++++++|+.+++.++. |+|+ +|++.
T Consensus 135 ~L~~~s~~v~~~~~e~L~~vA~tslsSK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~ 214 (590)
T 3p9d_C 135 VIKQVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDV 214 (590)
T ss_dssp HHHHHCCTTTTCCTHHHHHHHTTTSTTSTTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCG
T ss_pred HHHHHhhccccCCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCc
Confidence 9999999987 368899999988653 67899999999999987542 4444 47776
Q ss_pred cceeEeEeeEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHHHHHH-----------HH
Q 012313 137 YNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQAS-----------LP 192 (466)
Q Consensus 137 ~d~~~lv~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i~~~l-----------~~ 192 (466)
. ++++++||+|++++.+|.| +.+++||+|+++|++ |++++++.+++ ++
T Consensus 215 ~-ds~lv~Gmvfdk~~~~~~m-------~~~~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vek 286 (590)
T 3p9d_C 215 L-DSRVLKGVLLNKDVVHPKM-------SRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQ 286 (590)
T ss_dssp G-GCBCCSSEEECCCCSCTTS-------CSCEESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred c-cceeeeEEEEecccCCCCC-------cceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5899999999999888754 357999999999984 45566666654 67
Q ss_pred HHHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee
Q 012313 193 CMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 272 (466)
Q Consensus 193 i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~ 272 (466)
+.+.|.+|+|++++|+++++++|..++ |++++++ ++++|+|||++|||+++++ ++++++++||+
T Consensus 287 I~~~g~~vII~e~~I~d~Al~~L~k~~------I~av~~~-----~k~~le~ia~~TGa~iis~-----l~~~~~~~LG~ 350 (590)
T 3p9d_C 287 ILAVRPTLVITEKGVSDLAQHYLLKGG------CSVLRRV-----KKSDNNRIARVTGATIVNR-----VEDLKESDVGT 350 (590)
T ss_dssp HHTTCCSEECCSSCCCTHHHHHHHHTT------CCCCCCC-----CHHHHHHHHHHHTCCCCSC-----STTCCTTSCBC
T ss_pred HHhcCCcEEEecCCcCHHHHHHHHhcc------ceeeccC-----CHHHHHHHHHHhCCceeec-----ccCCCHHHhCC
Confidence 888987777777789999999999764 6776655 7888999999999999996 89999999999
Q ss_pred -eeEEE---EecceEEEEcCCCChhh--------------------------HHHHHHHHHHHhhhcchHHHHHHHhhhc
Q 012313 273 -CKRVI---ATMDNVVIIGGSGELVD--------------------------IQERCEQLRSTIKLSTSDKLKDRLAKLS 322 (466)
Q Consensus 273 -~~~v~---i~~~~~~~~~~~~~~~~--------------------------i~~r~~~l~~~l~~~~s~~l~~Rl~~l~ 322 (466)
|++|+ +++++|+||+||++++. |+.|+++++.+++.++|+ +.+|+++|+
T Consensus 351 ~a~~v~~~~ig~d~~~~i~g~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~i~~r~~~i~~~~~~~~~~-~~~~~~~l~ 429 (590)
T 3p9d_C 351 NCGLFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGH-HHHHHHHGS 429 (590)
T ss_dssp CCSEEECCEETTEECEEECC----------------------------------------------------------CC
T ss_pred cCCEEEEEEEcCcEEEEEeCCCCccccccccccccccccchhhhhcchhhHHHHHHHHHHHHHHhccCCH-HHHHHHhhc
Confidence 99996 57899999999999888 999999999999887772 336689999
Q ss_pred CCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc-CCcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHH
Q 012313 323 GGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAA 400 (466)
Q Consensus 323 g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~-gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip 400 (466)
|++|||+|||+|+++++|++|+++||||++|+++++ |+|||||++|+++|.+|++++.. ++++|+|+++|++||+.||
T Consensus 430 ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip 509 (590)
T 3p9d_C 430 GKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIP 509 (590)
T ss_dssp CSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTTHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHTTHHH
T ss_pred CCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCccHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 59999999999999999998764 8999999999999999999
Q ss_pred HHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 401 YLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 401 ~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
++||+|||+|+.++ .+|++. +++++|||+.+|++.||+++|||||+.||+++|++|+|+|++||||
T Consensus 510 ~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~i 579 (590)
T 3p9d_C 510 RTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRV 579 (590)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHTTSCTTCBCCTTSSSCBCTTTTTCCEEHHHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCEeEeCCCCeEeehHHcCCeEcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999873 5678999999999999999999999999999999999999999986
No 6
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.4e-87 Score=714.64 Aligned_cols=404 Identities=14% Similarity=0.152 Sum_probs=367.6
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|++.++++
T Consensus 53 G~tIlk~i~v~hP~Akll------~e~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~ 126 (515)
T 3iyg_H 53 GATILKLLDVVHPAAKTL------VDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNK 126 (515)
T ss_pred HHHHHHHccCCCHHHHHH------HHHHHHhhceeCcchhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--C----HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccC---Cceeeec--CCCccceeEeEeeE
Q 012313 84 LDCQARKIT--T----FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN---DLITIFD--RKALYNELNFVKGM 146 (466)
Q Consensus 84 L~~~~~~v~--~----~~~l~~va~ts~~------~~~~l~~li~~a~~~vg~~---~~I~i~~--g~~~~d~~~lv~G~ 146 (466)
|+++++|++ + ++.|.++|+||++ +++.|++++++|+.+++.+ +.|+|++ |++. +++++++||
T Consensus 127 L~~~a~~v~~~~~~~~~~~L~~va~tsl~sK~~s~~~~~i~~livdAv~~V~~~~d~~~I~V~k~~Gg~~-~ds~lv~G~ 205 (515)
T 3iyg_H 127 IKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGAL-EESQLVAGV 205 (515)
T ss_pred HHHhhcccccCChHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHhcccCCcceEEEEecCCCCc-cceEEEeee
Confidence 999999984 5 5678999998874 3678999999999999866 6788864 5555 468999999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHH-----------HHHHHHHHHcCCCEEE
Q 012313 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVI-----------RQASLPCMMQGQSLLV 202 (466)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i-----------~~~l~~i~~~~~~lvI 202 (466)
+|+++|.||||.+.|+ +++||+|+++|++ |++++++ .++++++.+.|+||||
T Consensus 206 ~~dk~~~~p~~~~~p~----~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi 281 (515)
T 3iyg_H 206 AFKKTFSYAGFEMQPK----KYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVL 281 (515)
T ss_pred EEecCccCcccccCCc----cccccEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9999999999976655 7999999999984 6777765 6679999999999999
Q ss_pred EecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe---
Q 012313 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT--- 279 (466)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~--- 279 (466)
++++|++.++++|.. .+|+++++. ++++|+|||++|||+++++ ++++++++||+|++|++.
T Consensus 282 ~~~~I~dla~~~l~~------~gI~~v~~~-----~k~~leria~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~ig 345 (515)
T 3iyg_H 282 SKLPIGDVATQYFAD------RDMFCAGRV-----PEEDLKRTMMACGGSIQTS-----VNALSSDVLGRCQVFEETQIG 345 (515)
T ss_pred ECCcccHHHHHHHHH------cCCcccccc-----cHHHHHHHHHHhCCEEeec-----cccCCHHHCCcccEEEEEEEc
Confidence 999999988887753 247788876 6888999999999999997 899999999999999864
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc-
Q 012313 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (466)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~- 358 (466)
+++|++|++|+++. .|||+|||+|+++++|++|+++||+|++|+++++
T Consensus 346 ~~~~~~i~g~~~~~-------------------------------~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~~~ 394 (515)
T 3iyg_H 346 GERYNFFTGCPKAK-------------------------------TCTIILRGGAEQFMEETERSLHDAIMIVRRAIKND 394 (515)
T ss_pred CeEEEEEecCCCCc-------------------------------eEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 78999999998753 5899999999999999999999999999999998
Q ss_pred CCcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCc
Q 012313 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGN 433 (466)
Q Consensus 359 gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~~~ 433 (466)
++|||||++|+++|.+|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++. +++++|||+.+|+
T Consensus 395 ~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~ 474 (515)
T 3iyg_H 395 SVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTED 474 (515)
T ss_pred CeecCCcHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccCCCeeEeCCCCc
Confidence 59999999999999999999876 899999999999999999999999999999999 999873 4567999999999
Q ss_pred cccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 434 YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 434 ~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.||+++|||||+.||+++|++|+|+|++||||
T Consensus 475 ~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~i 507 (515)
T 3iyg_H 475 IADNFEAFVWEPAMVRINALTAASEAACLIVSV 507 (515)
T ss_pred ccccHhccCEECHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986
No 7
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=100.00 E-value=1e-87 Score=719.72 Aligned_cols=401 Identities=18% Similarity=0.238 Sum_probs=369.9
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..||||+|+++||+||++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||++|++.++++
T Consensus 61 G~tIlk~i~v~hP~Akll------~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~ 134 (543)
T 3ruv_A 61 GVTILREMSVEHPAAKML------IEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQEL 134 (543)
T ss_dssp HHHHHHHSCCCCHHHHHH------HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCcCHHHHHH------HHHHHHHHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-Cc-----eeee--cCCCccceeEeEeeEE
Q 012313 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-DL-----ITIF--DRKALYNELNFVKGMK 147 (466)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~-~~-----I~i~--~g~~~~d~~~lv~G~~ 147 (466)
|+++++|++ +.+.|.++|+||+++ ++.|++++++|+.+++.+ |. |+|+ .|++. +++++++||+
T Consensus 135 L~~~s~~v~~~d~~~L~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~g~~dl~~I~V~k~~Gg~~-~ds~lv~G~v 213 (543)
T 3ruv_A 135 LKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASI-DDTELIKGVL 213 (543)
T ss_dssp HHHHCEECCTTCHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCTTSCCCGGGEEEEEEECSCG-GGCEEESSEE
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhccCCCcccceEEEEEcCCCCc-ccceeecceE
Confidence 999999987 788999999999874 789999999999999876 64 7776 56665 4689999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccc-------------cCCHHH-----------HHHHHHHHHHcCCCEEEE
Q 012313 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNV-----------IRQASLPCMMQGQSLLVV 203 (466)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~-----------i~~~l~~i~~~~~~lvIi 203 (466)
|+++|.||||+ .+++||+|+++|.+ |+++++ +.++++++.+.|+||||+
T Consensus 214 ~dk~~~~~~m~-------~~~~n~kIll~~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~ 286 (543)
T 3ruv_A 214 VDKERVSAQMP-------KKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFC 286 (543)
T ss_dssp ESCCCSCTTSC-------SEEEEEEEEEESSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred EeccccCcccc-------ccccCcEEEEEcccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999984 37899999999984 566655 667789999999999999
Q ss_pred ecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe---c
Q 012313 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---M 280 (466)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~---~ 280 (466)
+++|+++++++|..+ +|++|++. ++++|+|||++|||+++++ ++++++++||+|++|++. +
T Consensus 287 ~~~I~~~al~~L~~~------gI~~v~~v-----~k~~le~ia~~tGa~iis~-----l~~l~~~~LG~a~~v~~~~ig~ 350 (543)
T 3ruv_A 287 QKGIDDLAQHYLAKE------GIVAARRV-----KKSDMEKLAKATGANVIAA-----IAALSAQDLGDAGLVEERKISG 350 (543)
T ss_dssp SSCBCHHHHHHHHHT------TCEEECSC-----CHHHHHHHHHHHCCCEESC-----GGGCCGGGCEEEEEEEEEEETT
T ss_pred eCCccHHHHHHHHHc------CcEEEeeC-----CHHHHHHHHHHhCCceecc-----cccCCHHHCCcccEEEEEEeCC
Confidence 999999999999853 48899987 6888999999999999996 899999999999999865 8
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-
Q 012313 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (466)
Q Consensus 281 ~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g- 359 (466)
++|+||++|++++ .|||+|||+|+++++|++|+++||||++|+++++|
T Consensus 351 ~~~~~i~g~~~~~-------------------------------~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~ 399 (543)
T 3ruv_A 351 DSMIFVEECKHPK-------------------------------AVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGR 399 (543)
T ss_dssp EEEEEEECCSSCS-------------------------------SEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred ceEEEEECCCCCc-------------------------------eeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999998764 48999999999999999999999999999999999
Q ss_pred CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh----cCCCCeeEeCCCCc
Q 012313 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE----QDSSDLGYNPARGN 433 (466)
Q Consensus 360 vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~----~~~~~~G~d~~~~~ 433 (466)
+|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .+++++|||+.+|+
T Consensus 400 iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~ 479 (543)
T 3ruv_A 400 IVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGA 479 (543)
T ss_dssp EEETTTHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTTTCS
T ss_pred eecCCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCCCCc
Confidence 9999999999999999999865 899999999999999999999999999999999 99987 23578999999999
Q ss_pred cccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 434 YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 434 ~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.||+++|||||+.||+++|++|+|+|++||||
T Consensus 480 ~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~i 512 (543)
T 3ruv_A 480 VEDMCENGVVEPLRVKTQAIQSAAESTEMLLRI 512 (543)
T ss_dssp EEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccHHHcCCEecHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999997
No 8
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=100.00 E-value=8.3e-88 Score=720.85 Aligned_cols=401 Identities=19% Similarity=0.266 Sum_probs=370.2
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..||||+|+++||+||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|++.++++
T Consensus 72 G~tIlk~i~v~hP~Akll------~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~ 145 (553)
T 3ko1_A 72 GATILDKMDLQHPAAKLL------VQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQT 145 (553)
T ss_dssp HHHHHHSSCCCSHHHHHH------HHHHHTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhccChhHHHH------HHHhhCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC--Cc-------eeee--cCCCccceeEeEe
Q 012313 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--DL-------ITIF--DRKALYNELNFVK 144 (466)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~--~~-------I~i~--~g~~~~d~~~lv~ 144 (466)
|++++++++ +.+.|.++|+||+++ ++.|++++++|+.+++.+ |. |+|+ .|++. +++++++
T Consensus 146 L~~~s~~v~~~d~e~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~-~ds~lv~ 224 (553)
T 3ko1_A 146 IQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSI-NDTQLVY 224 (553)
T ss_dssp HHTTCEECCTTCHHHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCG-GGCEEES
T ss_pred HHHhcCCCCCCcHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCcc-ccceeeE
Confidence 999999987 788999999999985 689999999999999875 55 7876 46555 4789999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEecc-------------ccCCHHH-----------HHHHHHHHHHcCCCE
Q 012313 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-------------KISNSNV-----------IRQASLPCMMQGQSL 200 (466)
Q Consensus 145 G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~-------------~i~~~~~-----------i~~~l~~i~~~~~~l 200 (466)
||+|+++|.||||+ .+++||+|+++|+ +|+++++ +.++++++.+.|+||
T Consensus 225 G~v~dk~~~~~~m~-------~~ien~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~v 297 (553)
T 3ko1_A 225 GIVVDKEVVHPGMP-------KRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANV 297 (553)
T ss_dssp EEEECSCBSCTTSC-------SCCBSCEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSE
T ss_pred EEEecccccCCCCc-------cccccceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceE
Confidence 99999999999984 3789999999998 4677766 567789999999999
Q ss_pred EEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe-
Q 012313 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT- 279 (466)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~- 279 (466)
||++++|+++++++|..+ +|++|+++ ++++|+|||++|||+++++ ++++++++||+|++|++.
T Consensus 298 vI~~~~I~~~al~~L~~~------gI~~v~~v-----~k~~leria~~tGa~ivs~-----l~~l~~~~LG~a~~v~~~~ 361 (553)
T 3ko1_A 298 IICQKGIDEVAQSYLAKK------GVLAVRRA-----KKSDLEKLARATGGRVVSN-----IDEISEQDLGYASLIEERK 361 (553)
T ss_dssp EECSSCBCSHHHHHHHHH------TCEEECCC-----CHHHHHHHHTTTTCCEESC-----GGGCCSSSSEECSEEECCC
T ss_pred EEeccChHHHHHHHHHhc------chhhhhhh-----hhhhHHHHHHhhCCeeecc-----cccCChhhcchHHHHHHhh
Confidence 999999999999999854 38899987 6778999999999999996 899999999999999864
Q ss_pred --cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHH
Q 012313 280 --MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (466)
Q Consensus 280 --~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~ 357 (466)
+++|+||+||++++ .|||+|||+|+++++|++|+++||||++|++++
T Consensus 362 ig~d~~~~i~g~~~~~-------------------------------~~TI~lrG~te~~l~E~er~l~DAl~~~r~av~ 410 (553)
T 3ko1_A 362 VGEDKMVFVEGAKNPK-------------------------------SISILIRGGLERLVDETERALRDALGTVADVIK 410 (553)
T ss_dssp CSSSCCEEEESCSSSS-------------------------------CEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceEEEeccCCCCc-------------------------------eEEEeeeccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999998764 589999999999999999999999999999999
Q ss_pred cC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CC-CCeeEeCC
Q 012313 358 EG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DS-SDLGYNPA 430 (466)
Q Consensus 358 ~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~-~~~G~d~~ 430 (466)
+| +|||||++|++++.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++ +++|||+.
T Consensus 411 ~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~ 490 (553)
T 3ko1_A 411 DGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLY 490 (553)
T ss_dssp HCEEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCSGGGTTEEEETT
T ss_pred cCceecCCceeEeHHHHHHHHhccccCChhHhHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhCcCCceEeEEee
Confidence 99 9999999999999999999865 899999999999999999999999999999999 999873 33 68999999
Q ss_pred CCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 431 RGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 431 ~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+|++.||+++|||||+.||+++|++|+|+|++||||
T Consensus 491 ~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 526 (553)
T 3ko1_A 491 AGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRI 526 (553)
T ss_dssp TTEEEESGGGSCEEETTHHHHHHHHHHHHHHHHHHE
T ss_pred cCCchHHHHhCccchhhhhhhhhhhcchhheEEEeh
Confidence 999999999999999999999999999999999986
No 9
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=100.00 E-value=1.4e-87 Score=712.77 Aligned_cols=401 Identities=17% Similarity=0.235 Sum_probs=340.1
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..||||+|+++||+||++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||++|++.++++
T Consensus 15 G~tIlk~i~v~hP~Akll------~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~ 88 (500)
T 3aq1_B 15 GATILKEMDIQHPAAKMI------VEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCREI 88 (500)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCHHHHHH------HHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccC--Cc--------eeee--cCCCccceeEeE
Q 012313 84 LDCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN--DL--------ITIF--DRKALYNELNFV 143 (466)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~------~~~~l~~li~~a~~~vg~~--~~--------I~i~--~g~~~~d~~~lv 143 (466)
|+++++|++ +.+.|.++|+||++ +++.|++++++|+.+++.+ |. |+|+ +|++.. +++++
T Consensus 89 L~~~s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~-ds~lv 167 (500)
T 3aq1_B 89 LETITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSID-DSELI 167 (500)
T ss_dssp HHHHCEECCTTCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGG-GCEEE
T ss_pred HHHhcCCCCCCcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEecCCCcc-ceEEE
Confidence 999999986 47899999998854 4678999999999999865 43 6676 788874 78999
Q ss_pred eeEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHH-----------HHHHHHHHHcCCC
Q 012313 144 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVI-----------RQASLPCMMQGQS 199 (466)
Q Consensus 144 ~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i-----------~~~l~~i~~~~~~ 199 (466)
+|++|+++|.||+|+. +++||+|+++|++ |++++++ .++++++.++|+|
T Consensus 168 ~G~v~dk~~~~~~m~~-------~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~ 240 (500)
T 3aq1_B 168 DGLVIDKERSHPNMPE-------KVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGAN 240 (500)
T ss_dssp SEEEESCCCSSTTSCS-------EEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCS
T ss_pred eeeEEeecCCCCCCcc-------cccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999999999843 7899999999998 6666665 8999999999999
Q ss_pred EEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe
Q 012313 200 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT 279 (466)
Q Consensus 200 lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~ 279 (466)
|||++++|+++++++|..|+ |++|++. ++++|+|||++|||+++++ ++++++++||+|++|++.
T Consensus 241 lvi~~~~I~~~al~~L~~~~------I~av~~~-----~k~~le~ia~~tGa~iis~-----l~~~~~~~LG~a~~v~~~ 304 (500)
T 3aq1_B 241 VVFCQKGIDDMAQYYIEKAG------IYAVRRV-----KKSDLKRLSKVTGATIIQD-----LDQITTEDVGTAGLVEEK 304 (500)
T ss_dssp EEEESSCBCHHHHHHHHHTT------CEEECSC-----CHHHHHHHHHHHCCCCBSC-----TTCCCSTTCEEEEEEEEE
T ss_pred EEEECCCcCHHHHHHHHHCC------EEEEEeC-----CHHHHHHHHHHhCCeEecc-----cccCCHhHCCCceEEEEE
Confidence 99999999999999999864 8999877 7888999999999999996 899999999999999875
Q ss_pred ---cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHH
Q 012313 280 ---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAK 356 (466)
Q Consensus 280 ---~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~ 356 (466)
+++|++|+||+++ +.|||+|||+|+++++|++|+++||+|++|+++
T Consensus 305 ~ig~~~~~~~~g~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~ 353 (500)
T 3aq1_B 305 EVRGGKMTYVTGCQNS-------------------------------KAVTVLLHGGTEHVVDSLDHALNDALHVVGVVI 353 (500)
T ss_dssp ECSSSEEEEEEEETTC-------------------------------CCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCeEEEEEECCCCC-------------------------------ceEEEEecCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999998764 579999999999999999999999999999999
Q ss_pred HcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCC
Q 012313 357 EEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPA 430 (466)
Q Consensus 357 ~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~ 430 (466)
++| +|||||++|++++.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.
T Consensus 354 ~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~ 433 (500)
T 3aq1_B 354 EDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVY 433 (500)
T ss_dssp HHSEEEETTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTEEECTT
T ss_pred HCCCCCCCCcHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeeEeCC
Confidence 999 9999999999999999999865 899999999999999999999999999999999 999863 4568999999
Q ss_pred CCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 431 RGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 431 ~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+|++.||++.|||||+.||+++|++|+|+|++||+|
T Consensus 434 ~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 469 (500)
T 3aq1_B 434 TGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRI 469 (500)
T ss_dssp TCCEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCccchHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997
No 10
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=100.00 E-value=3.3e-87 Score=711.85 Aligned_cols=400 Identities=17% Similarity=0.194 Sum_probs=366.7
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..||||+|+++||+||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|++.++++
T Consensus 54 G~tIlk~i~v~hp~Akll------~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~ 127 (513)
T 3iyg_B 54 GATILKNIGVDNPAAKVL------VDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQA 127 (513)
T ss_pred HHHHHHHccccCHHHHHH------HHHHHHhhhhhCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccC---Cceeeec--CCCccceeEeEeeEE
Q 012313 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN---DLITIFD--RKALYNELNFVKGMK 147 (466)
Q Consensus 84 L~~~~~~v~-----~~~~l~~va~ts~~------~~~~l~~li~~a~~~vg~~---~~I~i~~--g~~~~d~~~lv~G~~ 147 (466)
|+++++|++ +.+.|.++|+||++ +++.|++++++|+.+++.+ +.|+|++ |++.. ++++++||+
T Consensus 128 L~~~s~~v~~~~~~~~~~l~~va~tslssK~~~~~~~~i~~livdAv~~V~~~~d~~~I~V~ki~gg~~~-ds~lv~G~v 206 (513)
T 3iyg_B 128 LLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLA-DSYLDEGFL 206 (513)
T ss_pred HHHhCcCcccccccCHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhcccCCcCeEEEEEeCCCCcc-ceeEEeeEE
Confidence 999999986 46889999998775 3578999999999999987 7788864 66654 579999999
Q ss_pred EeccccCCccccccccceeeecCceEEEecc--------------ccCCHHHHHH-----------HHHHHHHcCCCEEE
Q 012313 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDT--------------KISNSNVIRQ-----------ASLPCMMQGQSLLV 202 (466)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~--------------~i~~~~~i~~-----------~l~~i~~~~~~lvI 202 (466)
|+++|.+| | +.+++||+|+++|+ ++++++++.+ +++++.++|+||||
T Consensus 207 ~dk~~~~~-m-------~~~~en~kIll~~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi 278 (513)
T 3iyg_B 207 LDKKIGVN-Q-------PKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFI 278 (513)
T ss_pred EeccccCC-C-------ceeecCceEEEEcCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 99999988 3 34799999999997 4667776654 68889999999999
Q ss_pred EecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 012313 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (466)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~---i~ 279 (466)
++++|+++++++|..+ +|++||+|+ +.+|+|||++|||+++++ ++++++++||+|++|+ ++
T Consensus 279 ~~~~I~~~al~~L~~~------~I~av~~~~-----~~~le~ia~~tGa~ii~~-----l~~l~~~~LG~a~~v~~~~ig 342 (513)
T 3iyg_B 279 NRQLIYNYPEQLFGAA------GVMAIEHAD-----FVGVERLALVTGGEIAST-----FDHPELVKLGSCKLIEEVMIG 342 (513)
T ss_pred EcCCccHHHHHHHHHc------CceEEecCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCCcccEEEEEEEC
Confidence 9999999999999863 599999996 456999999999999996 8999999999999997 67
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc-
Q 012313 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (466)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~- 358 (466)
++++++|.||+++ +.|||+|||+|+++++|++|+++||+|++|+++++
T Consensus 343 ~~~~~~~~g~~~~-------------------------------~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~ 391 (513)
T 3iyg_B 343 EDKLIHFSGVALG-------------------------------EACTIVLRGATQQILDEAERSLHDALCVLAQTVKDS 391 (513)
T ss_pred CeEEEEEecCCCC-------------------------------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8899999998753 57999999999999999999999999999999998
Q ss_pred CCcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCc
Q 012313 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGN 433 (466)
Q Consensus 359 gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~~~ 433 (466)
++|||||++|++++.+|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++. +++++|||+.+|+
T Consensus 392 ~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~ 471 (513)
T 3iyg_B 392 RTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGT 471 (513)
T ss_pred cEEeCCcHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCCC
Confidence 69999999999999999999875 899999999999999999999999999999999 999873 5678999999999
Q ss_pred cccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 434 YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 434 ~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.||+++|||||+.||+++|++|+|+|++||||
T Consensus 472 ~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~i 504 (513)
T 3iyg_B 472 IGDMSVLGITESFQVKRQVLLSAAEAAEVILRV 504 (513)
T ss_pred ccchHhccCEecHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986
No 11
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=100.00 E-value=7.4e-88 Score=722.64 Aligned_cols=406 Identities=17% Similarity=0.250 Sum_probs=370.7
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|++.++++
T Consensus 66 G~tIlk~i~v~hP~Akll------~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~ 139 (559)
T 3p9d_A 66 GATILSLLDVQHPAGKIL------VELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRF 139 (559)
T ss_dssp HHHHHHHHCCCSHHHHHH------HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHH------HHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred Hhh-hccccCC--HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc-----CCc-----eeee--cCCCccceeEe
Q 012313 84 LDC-QARKITT--FEEIAQVGTTAANG------DGEIGELIAKVFEKGWE-----NDL-----ITIF--DRKALYNELNF 142 (466)
Q Consensus 84 L~~-~~~~v~~--~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~-----~~~-----I~i~--~g~~~~d~~~l 142 (466)
|++ +++|++. .+.|.++|+||+++ ++.|++++++|+.++++ ++. |+|+ +|++.. ++++
T Consensus 140 L~~~~s~~v~~~~~e~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~-ds~l 218 (559)
T 3p9d_A 140 INEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSAT-ESLL 218 (559)
T ss_dssp HHHHTGGGSCC--CTTHHHHHHHTTSSSGGGTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSS-CCBC
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCcc-ceeE
Confidence 999 9999874 67899999999985 68999999999999983 244 4554 388776 5899
Q ss_pred EeeEEEeccccCCccccccccceeeec--CceEEEecccc-------------CCHHH-----------HHHHHHHHHHc
Q 012313 143 VKGMKLEWGLKSPYFFTHKNKKECVLD--GALVLIYDTKI-------------SNSNV-----------IRQASLPCMMQ 196 (466)
Q Consensus 143 v~G~~~~~~~~~~~~~~~~~~~~~~l~--~~~Il~~d~~i-------------~~~~~-----------i~~~l~~i~~~ 196 (466)
++||+|+++|.+|||++ .++ +|+|+++|.+| +++++ ++++++++.++
T Consensus 219 v~G~v~dk~~~~~~m~~-------~ie~~n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~ 291 (559)
T 3p9d_A 219 VPGYALNCTVASQAMPK-------RIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDA 291 (559)
T ss_dssp CSEECCCCCCSSTTSCS-------EECSSSBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eccEEEeecccCCCcce-------eeccCCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999853 677 99999999876 34433 78899999999
Q ss_pred CCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCc-CCCCCCCceeeeE
Q 012313 197 GQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNS-TYFVPLKLGSCKR 275 (466)
Q Consensus 197 ~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~-~~~~~~~lG~~~~ 275 (466)
|+||||++++|+++++++|..|+ |++|+++ ++++|+|||++|||+++++..++.+ +++++++||+|++
T Consensus 292 g~~lvI~~~~I~~~al~~L~~~~------I~av~~~-----~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~ 360 (559)
T 3p9d_A 292 GAQVVLTTKGIDDLCLKEFVEAK------IMGVRRC-----KKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDE 360 (559)
T ss_dssp CCSEEEESSCCCGGGTHHHHHTT------CEEESSC-----CHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEE
T ss_pred CCCEEEEcCCCCHHHHHHHHHcC------CceEccC-----CHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceE
Confidence 99999999999999999999875 7899877 6888999999999999999766654 8899999999999
Q ss_pred EE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHH
Q 012313 276 VI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAV 352 (466)
Q Consensus 276 v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~ 352 (466)
|+ +++++|+||.||+++ +.|||+|||+|+++++|++|+++||||++
T Consensus 361 v~~~~ig~~~~~~~~g~~~~-------------------------------~~~tI~lrG~te~~l~E~kr~l~DAL~~~ 409 (559)
T 3p9d_A 361 VVQAKFSDDECILIKGTSKH-------------------------------SSSSIILRGANDYSLDEMERSLHDSLSVV 409 (559)
T ss_dssp EEEEECSSCEEECEEEESSS-------------------------------CCCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCceEEEEEcCCCC-------------------------------CEEEEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 98 578999999998764 57999999999999999999999999999
Q ss_pred HHHHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCC---
Q 012313 353 QAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSS--- 423 (466)
Q Consensus 353 r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~--- 423 (466)
|+++++| +|||||++|++++.+|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++. +++
T Consensus 410 r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~ 489 (559)
T 3p9d_A 410 KRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKP 489 (559)
T ss_dssp HHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHTTSCCC-
T ss_pred HHHhhcCCEEeCccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhccccccc
Confidence 9999999 9999999999999999999876 899999999999999999999999999999999 999873 333
Q ss_pred ---------CeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 424 ---------DLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 424 ---------~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
++|||+.+|++.||+++|||||+.||+++|++|+|+|++||||
T Consensus 490 ~~~~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~i 541 (559)
T 3p9d_A 490 EDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRI 541 (559)
T ss_dssp ---CCCCCCCEEECTTSSSEEESTTSSCCEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred cccccccccceeEECCCCcEeehhhccCEecHHHHHHHHHHHHHHHHHHHhH
Confidence 7999999999999999999999999999999999999999986
No 12
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.1e-86 Score=710.32 Aligned_cols=406 Identities=15% Similarity=0.176 Sum_probs=367.4
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|++.++++
T Consensus 52 G~tIlk~i~v~hP~akll------~~~a~~qd~e~GDGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~ 125 (529)
T 3iyg_A 52 GATILKLLEVEHPAAKVL------CELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY 125 (529)
T ss_pred HHHHHHHcccCChHHHHH------HHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred Hhh-hccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhc---cCC-----c--eeee--cCCCccceeEe
Q 012313 84 LDC-QARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGW---END-----L--ITIF--DRKALYNELNF 142 (466)
Q Consensus 84 L~~-~~~~v~--~~~~l~~va~ts~~------~~~~l~~li~~a~~~vg---~~~-----~--I~i~--~g~~~~d~~~l 142 (466)
|++ ++++++ +.+.|.++|+||++ +++.|++++++|+.+++ .+| . |+|+ +|++.. ++++
T Consensus 126 L~~~~s~~v~~~~~e~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~-ds~l 204 (529)
T 3iyg_A 126 ISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQM-ESML 204 (529)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCcc-ceEE
Confidence 999 999987 67899999999985 36899999999999997 233 2 6664 576665 5899
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEecccc-------------CCHH-----------HHHHHHHHHHHcCC
Q 012313 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNSN-----------VIRQASLPCMMQGQ 198 (466)
Q Consensus 143 v~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i-------------~~~~-----------~i~~~l~~i~~~~~ 198 (466)
++||+|+++|.+|+|++ .++||+|+++|.++ ++++ ++.++++++.+.|+
T Consensus 205 v~G~v~dk~~~~~~m~~-------~ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~ 277 (529)
T 3iyg_A 205 INGYALNCVVGSQGMPK-------RIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGA 277 (529)
T ss_pred EeeeEEecCcccccCCc-------ccCCceEEEecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999864 68899999999854 3333 26678899999999
Q ss_pred CEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCC-cCCCCCCCceeeeEEE
Q 012313 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMN-STYFVPLKLGSCKRVI 277 (466)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~-~~~~~~~~lG~~~~v~ 277 (466)
||||++++|+++++++|..|+ |++||+. ++++|+|||++|||+++++..+++ .+++++++||+|++|+
T Consensus 278 nvvi~~~~I~d~al~~L~~~g------I~av~~v-----~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~ 346 (529)
T 3iyg_A 278 NVILTTGGIDDMCLKYFVEAG------AMAVRRV-----LKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVV 346 (529)
T ss_pred CEEEECCCCCHHHHHHHHHcC------CceeccC-----CHHHHHHHHHHhCCeeecchhcccchhccChhhCccceEEE
Confidence 999999999999999999874 8999987 688899999999999999865544 3557789999999997
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHH
Q 012313 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (466)
Q Consensus 278 ---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~ 354 (466)
+++++|+||+||+++ +.|||+|||+|+++++|.+|+++||+|++|+
T Consensus 347 ~~~ig~~~~~~~~g~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~ 395 (529)
T 3iyg_A 347 QERICDDELILIKNTKAR-------------------------------TSASVILRGANDFMCDEMERSLHDALCVVKR 395 (529)
T ss_pred EEEeCCceEEEEEcCCCC-------------------------------ceEEEEECCchHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999875 3699999999999999999999999999999
Q ss_pred HHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CC------
Q 012313 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DS------ 422 (466)
Q Consensus 355 a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~------ 422 (466)
++++| +||||||+|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++
T Consensus 396 ~v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~ 475 (529)
T 3iyg_A 396 VLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERK 475 (529)
T ss_pred HhhCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccccccc
Confidence 99999 9999999999999999999876 899999999999999999999999999999999 999873 33
Q ss_pred --CCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 423 --SDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 423 --~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
.++|||+.+|++.||+++|||||+.||+++|++|+|+|++||||
T Consensus 476 ~~~~~G~d~~~g~~~d~~~~gV~dp~~vk~~al~~A~e~a~~iL~i 521 (529)
T 3iyg_A 476 NLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRI 521 (529)
T ss_pred cCceeeeeCCCCCccChhhccCEecHHHHHHHHHHHHHHHHHHHhH
Confidence 57999999999999999999999999999999999999999997
No 13
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=100.00 E-value=1e-86 Score=712.83 Aligned_cols=401 Identities=18% Similarity=0.267 Sum_probs=372.0
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..||||+|+++||+||++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||++|++.++++
T Consensus 65 G~tIlk~i~v~hP~Akll------~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~ 138 (548)
T 1q3q_A 65 CATILDKIDLQHPAAKMM------VEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEI 138 (548)
T ss_dssp HHHHHHHSCCCSHHHHHH------HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchHHHHH------HHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC--C-------ceeee--cCCCccceeEeEe
Q 012313 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--D-------LITIF--DRKALYNELNFVK 144 (466)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~--~-------~I~i~--~g~~~~d~~~lv~ 144 (466)
|+++++|++ +.++|.++|+||+++ ++.|++++++|+.+++++ | .|+|+ +|++.. ++++++
T Consensus 139 L~~~s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~-ds~lv~ 217 (548)
T 1q3q_A 139 LDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVE-ESELVR 217 (548)
T ss_dssp HHHHCEECCTTCHHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGG-GCEEES
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCcc-ceEEEe
Confidence 999999986 478999999988653 578999999999999865 3 68887 788876 579999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHH-----------HHHHHHHHHcCCCE
Q 012313 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVI-----------RQASLPCMMQGQSL 200 (466)
Q Consensus 145 G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i-----------~~~l~~i~~~~~~l 200 (466)
|++|+++|.||||+ ..++||+|+++|.+ |++++++ +++++++.++|+||
T Consensus 218 G~v~dk~~~~~~m~-------~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~l 290 (548)
T 1q3q_A 218 GVVIDKEVVHPRMP-------KRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANV 290 (548)
T ss_dssp SEEESCCCSSTTSC-------SEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred eEEEeccCCCCCCc-------ceecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCE
Confidence 99999999999984 26899999999998 7778775 78899999999999
Q ss_pred EEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe-
Q 012313 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT- 279 (466)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~- 279 (466)
||++++|+++++++|..|+ |++|++. ++++|+|||++|||+++++ ++++++++||+|++|++.
T Consensus 291 vi~~~~I~~~al~~L~~~~------I~av~~~-----~k~~le~ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~ 354 (548)
T 1q3q_A 291 VFVQKGIDDLAQHYLAKYG------IMAVRRV-----KKSDMEKLAKATGAKIVTN-----VKDLTPEDLGYAEVVEERK 354 (548)
T ss_dssp EEESSCBCHHHHHHHHHTT------CEEECSC-----CHHHHHHHHHHHCCCCBSS-----GGGCCGGGCEEESEEEEEE
T ss_pred EEEcCCcCHHHHHHHHHCC------cEEEccC-----CHHHHHHHHHHhCCeEecc-----cccCCHHHCCCceEEEEEE
Confidence 9999999999999999864 8999877 6888999999999999996 899999999999999864
Q ss_pred --cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHH
Q 012313 280 --MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (466)
Q Consensus 280 --~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~ 357 (466)
+++|+||++|+++ +.|||+|||+|+++++|++|+++||+|++|++++
T Consensus 355 ig~~~~~~~~g~~~~-------------------------------~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a~~ 403 (548)
T 1q3q_A 355 LAGENMIFVEGCKNP-------------------------------KAVTILIRGGTEHVIDEVERALEDAVKVVKDVME 403 (548)
T ss_dssp ETTEEEEEEECCSSC-------------------------------SSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCceEEEEecCCCC-------------------------------CeEEEEECCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999998764 4699999999999999999999999999999999
Q ss_pred cC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCC
Q 012313 358 EG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR 431 (466)
Q Consensus 358 ~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~ 431 (466)
+| +|||||++|++++.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+
T Consensus 404 ~~~ivpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~ 483 (548)
T 1q3q_A 404 DGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFE 483 (548)
T ss_dssp SCEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTT
T ss_pred CCCcccCCcHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceeCCC
Confidence 99 9999999999999999999865 899999999999999999999999999999999 999863 45689999999
Q ss_pred CccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 432 GNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 432 ~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|++.||++.|||||+.||+++|++|+|+|++||+|
T Consensus 484 g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 518 (548)
T 1q3q_A 484 GKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRI 518 (548)
T ss_dssp TEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCccchhhcCCEecHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997
No 14
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=100.00 E-value=9.2e-87 Score=712.70 Aligned_cols=400 Identities=19% Similarity=0.246 Sum_probs=370.9
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..||||+|+++||+||++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||++|++.++++
T Consensus 64 G~tIlk~i~v~hP~Akll------~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~ 137 (545)
T 1a6d_A 64 GATILKEMDVEHPTAKMI------VEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKI 137 (545)
T ss_dssp HHHHHHHSCCCSHHHHHH------HGGGGCTTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHH------HHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC-CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccC---------Cceeee--cCCCccceeEeEee
Q 012313 84 LDCQARKIT-TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN---------DLITIF--DRKALYNELNFVKG 145 (466)
Q Consensus 84 L~~~~~~v~-~~~~l~~va~ts~~------~~~~l~~li~~a~~~vg~~---------~~I~i~--~g~~~~d~~~lv~G 145 (466)
|+++++| + +.++|.++|+||++ +++.|++++++|+.+++++ +.|+|+ +|++.. ++++++|
T Consensus 138 L~~~s~~-~~~~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~-ds~lv~G 215 (545)
T 1a6d_A 138 IDEIAEK-STDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVN-DTQFISG 215 (545)
T ss_dssp HHHHCEE-CCCHHHHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCST-TCEEESE
T ss_pred HHHhcCC-CCCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCce-eeEEEee
Confidence 9999999 7 78899999998864 3688999999999999865 368887 788876 5799999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHH-----------HHHHHHHHHcCCCEE
Q 012313 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVI-----------RQASLPCMMQGQSLL 201 (466)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i-----------~~~l~~i~~~~~~lv 201 (466)
++|+++|.||||+ ..++||+|+++|.+ |++++++ +++++++.++|+|||
T Consensus 216 ~v~dk~~~~~~m~-------~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lv 288 (545)
T 1a6d_A 216 IVIDKEKVHSKMP-------DVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVV 288 (545)
T ss_dssp EEESCCCSCTTSC-------SEEEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEeccCCCCCCc-------ceecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 9999999999984 26899999999998 6677665 788999999999999
Q ss_pred EEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe--
Q 012313 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT-- 279 (466)
Q Consensus 202 Ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~-- 279 (466)
|++++|+++++++|..|+ |++|++. ++++|+|||++|||+++++ ++++++++||+|++|++.
T Consensus 289 i~~~~I~~~al~~L~~~~------I~av~~~-----~k~~le~ia~~tGa~iis~-----l~~~~~~~LG~a~~v~~~~i 352 (545)
T 1a6d_A 289 LCQKGIDDVAQHYLAKEG------IYAVRRV-----KKSDMEKLAKATGAKIVTD-----LDDLTPSVLGEAETVEERKI 352 (545)
T ss_dssp EESSCBCHHHHHHHHHHT------CEEECSC-----CHHHHHHHHHHHCCCEESS-----GGGCCGGGCEEEEEEEEEEE
T ss_pred EECCCccHHHHHHHHHCC------eeEeccC-----CHHHHHHHHHHhCCeeecc-----cccCCHHHCCCceEEEEEEe
Confidence 999999999999999874 8999877 6888999999999999996 899999999999999864
Q ss_pred -cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc
Q 012313 280 -MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (466)
Q Consensus 280 -~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~ 358 (466)
+++|+||++|+++ +.|||+|||+|+++++|++|+++||+|++|+++++
T Consensus 353 g~~~~~~~~g~~~~-------------------------------~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~a~~~ 401 (545)
T 1a6d_A 353 GDDRMTFVMGCKNP-------------------------------KAVSILIRGGTDHVVSEVERALNDAIRVVAITKED 401 (545)
T ss_dssp TTEEEEEEEEESCS-------------------------------SCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEecCCCC-------------------------------ceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7899999998764 46999999999999999999999999999999999
Q ss_pred C-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 012313 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (466)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~~ 432 (466)
| +|||||++|++++.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|
T Consensus 402 g~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g 481 (545)
T 1a6d_A 402 GKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNN 481 (545)
T ss_dssp CEEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTT
T ss_pred CCEEeCcCHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceecccC
Confidence 9 9999999999999999999865 899999999999999999999999999999999 999863 456899999999
Q ss_pred ccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 433 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 433 ~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
++.||++.|||||+.||+++|++|+|+|++||+|
T Consensus 482 ~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 515 (545)
T 1a6d_A 482 GVGDMKAKGVVDPLRVKTHALESAVEVATMILRI 515 (545)
T ss_dssp EEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhcCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997
No 15
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=3.5e-86 Score=704.72 Aligned_cols=408 Identities=16% Similarity=0.179 Sum_probs=364.0
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+||++ +++|++||+++||||||+||||++||++|.+++. |+||+.|++||++|++.++++
T Consensus 52 G~tIlk~i~~~hP~Akll------~~~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~ 125 (515)
T 3iyg_E 52 GATILSMMDVDHQIAKLM------VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEH 125 (515)
T ss_pred HHHHHHHcccCCHHHHHH------HHHHHHhhhhhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccCC----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-------Cceeee--cCCCccceeEeEe
Q 012313 84 LDCQARKITT----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-------DLITIF--DRKALYNELNFVK 144 (466)
Q Consensus 84 L~~~~~~v~~----~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~-------~~I~i~--~g~~~~d~~~lv~ 144 (466)
|+++++|++. .++|.++|+||+++ .+.|++++++|+..+... +.|+|+ .|++.. ++++++
T Consensus 126 L~~~s~~v~~~~~~~~~l~~vA~tsl~sK~i~~~~~~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~-ds~lv~ 204 (515)
T 3iyg_E 126 LDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLE-DTKLIK 204 (515)
T ss_pred HHHhceecCCCccCHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcc-cceEEe
Confidence 9999988753 58899999999985 357889999999888541 346665 577775 589999
Q ss_pred eEEEeccccCCcccccccc-ceeeecCceEEE-----eccccCCHHHH-----------HHHHHHHHHcCCCEEEEeccc
Q 012313 145 GMKLEWGLKSPYFFTHKNK-KECVLDGALVLI-----YDTKISNSNVI-----------RQASLPCMMQGQSLLVVAEDV 207 (466)
Q Consensus 145 G~~~~~~~~~~~~~~~~~~-~~~~l~~~~Il~-----~d~~i~~~~~i-----------~~~l~~i~~~~~~lvIi~~~i 207 (466)
||+|+++|.||||+++.+. +...+++|+.+. ++.+|++++++ .++++++.++|+||||++++|
T Consensus 205 G~~~dk~~~~~~m~~~~~~~kIall~~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I 284 (515)
T 3iyg_E 205 GVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGF 284 (515)
T ss_pred eEEEecccccccccccCCCceEEEEcCccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999999999999875543 223445554433 33457777765 678999999999999999999
Q ss_pred chhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE-----ecce
Q 012313 208 ENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-----TMDN 282 (466)
Q Consensus 208 ~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i-----~~~~ 282 (466)
+++++++|..|+ +++++++ ++.+|+|||++|||+++++ ++++++++||+|++|++ ++++
T Consensus 285 ~~~al~~L~~~~------I~~v~~v-----~k~~le~ia~~tGa~ii~~-----l~~l~~~~LG~a~~v~~~~ig~~k~~ 348 (515)
T 3iyg_E 285 DDEANHLLLQND------LPAVRWV-----GGPEIELIAIATGGRIVPR-----FSELTAEKLGFAGLVKEISFGTTKDK 348 (515)
T ss_pred CHHHHHHHHHCC------CEEEecc-----CHHHHHHHHHHhCCEEecc-----cccCCHHHCCcceEEEEEEeccccce
Confidence 999999999875 7789988 4777999999999999996 89999999999999986 3478
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-Cc
Q 012313 283 VVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IV 361 (466)
Q Consensus 283 ~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g-vV 361 (466)
++||+||+++. .|||+|||+|+++++|++|+++||+|++|+++++| +|
T Consensus 349 ~~~~~g~~~~~-------------------------------~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iV 397 (515)
T 3iyg_E 349 MLVIEQCKNSR-------------------------------AVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVV 397 (515)
T ss_pred EEEEEcCCCCc-------------------------------eEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 99999998764 58999999999999999999999999999999999 99
Q ss_pred CCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc----CCCCeeEeCCCCccc
Q 012313 362 PGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----DSSDLGYNPARGNYV 435 (466)
Q Consensus 362 pGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~----~~~~~G~d~~~~~~~ 435 (466)
||||++|++++.+|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++. +++++|||+.+|++.
T Consensus 398 pGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~ 477 (515)
T 3iyg_E 398 YGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTN 477 (515)
T ss_pred CCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCCccc
Confidence 99999999999999999876 899999999999999999999999999999999 999862 457899999999999
Q ss_pred cccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 436 DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 436 d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
||+++|||||+.||+++|++|+|+|++||||
T Consensus 478 d~~~~gI~dp~~vk~~al~~A~~~a~~iL~i 508 (515)
T 3iyg_E 478 DMKHQHVIETLIGKKQQISLATQMVRMILKI 508 (515)
T ss_pred chHhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999986
No 16
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=100.00 E-value=1.8e-87 Score=715.73 Aligned_cols=405 Identities=15% Similarity=0.142 Sum_probs=368.2
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+||++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||++|++.++++
T Consensus 61 G~tIlk~i~v~hP~akll------~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~ 134 (528)
T 3p9d_D 61 GHTILKQMAILHPVARML------VEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDI 134 (528)
T ss_dssp HHHHHHHSCCCCTTHHHH------HHHHHHHHHHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCCHHHHHH------HHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc--CCceeee-------cCCCccceeEeEeeE
Q 012313 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE--NDLITIF-------DRKALYNELNFVKGM 146 (466)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~--~~~I~i~-------~g~~~~d~~~lv~G~ 146 (466)
|+++++|++ +.+.|.++|+||+++ ++.|++++++|+.++++ ++.|.++ +|++.. ++++++||
T Consensus 135 L~~~s~~v~~~~~e~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~Gg~~~-ds~lv~G~ 213 (528)
T 3p9d_D 135 LLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTID-DTEMIDGV 213 (528)
T ss_dssp HHTTCCCCCSCCHHHHHHHHHHHSCSSSCSTTHHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCCSSCSC-CCEEESSC
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHhccccCCccceEEEEEEEecCCCcc-ceEEEeee
Confidence 999999987 788999999999975 57899999999999986 3544443 377775 58999999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccC-------------CHH-----------HHHHHHHHHHHcCCCEEE
Q 012313 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS-------------NSN-----------VIRQASLPCMMQGQSLLV 202 (466)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~-------------~~~-----------~i~~~l~~i~~~~~~lvI 202 (466)
+|+++|.|||| |+..++||+|+++|++++ +++ ++.++++++.+.|+||||
T Consensus 214 v~dk~~~~~~~------m~~~ien~kIll~~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi 287 (528)
T 3p9d_D 214 VLTQTAIKSAG------GPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLL 287 (528)
T ss_dssp BCCCCCCCSSS------CCSEESSEEEEEECCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEeecccCccc------CcccccCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999985 234899999999999765 443 378899999999999999
Q ss_pred Eeccc-----chhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE
Q 012313 203 VAEDV-----ENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI 277 (466)
Q Consensus 203 i~~~i-----~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~ 277 (466)
++++| +++++++|..| +|++||++ ++++|+|||++|||+++++ ++++++++||+|++|+
T Consensus 288 ~~~~I~~~a~~~~al~~L~~~------~I~av~~~-----~k~~le~ia~~tGa~ii~~-----~~~l~~~~LG~a~~v~ 351 (528)
T 3p9d_D 288 IQKSILRDAVNDLALHFLSKL------NIMVVKDI-----EREEIEFLSKGLGCKPIAD-----IELFTEDRLDSADLVE 351 (528)
T ss_dssp ESSCSCTTSCSCHHHHHHTTT------SCCEEECC-----CTHHHHHHHHHHTCCCCSC-----STTCCSSSEEEESCEE
T ss_pred EeCCcccccCCHHHHHHHHHc------CcEEEEeC-----CHHHHHHHHHHHCCEEecc-----cccCCHHHCCcccEEE
Confidence 99999 99999988865 48999988 5778999999999999997 7899999999999997
Q ss_pred E---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHH
Q 012313 278 A---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (466)
Q Consensus 278 i---~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~ 354 (466)
+ +++++++|.+|.... .++.|||+|||+|+++++|++|+++||+|++|+
T Consensus 352 ~~~ig~~~~~~i~g~~~~~----------------------------~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~ 403 (528)
T 3p9d_D 352 EIDSDGSKIVRVTGIRNNN----------------------------ARPTVSVVIRGANNMIIDETERSLHDALCVIRC 403 (528)
T ss_dssp CCEETTEECCBCTTBCCGG----------------------------GCCCCEEECCCSSTTHHHHHHHHHTTTHHHHHH
T ss_pred EEEECCEEEEEEEcccccC----------------------------CCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 567889998876311 146899999999999999999999999999999
Q ss_pred HHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEe
Q 012313 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYN 428 (466)
Q Consensus 355 a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d 428 (466)
++++| +|||||++|++++.+|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++. +++++|||
T Consensus 404 av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d 483 (528)
T 3p9d_D 404 LVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGIS 483 (528)
T ss_dssp HHHSSCEEETTTHHHHHHHHHHHHCCTTSCHHHHTTHHHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCSSSCCCCCC
T ss_pred HHhcCCccCCCCHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCcccee
Confidence 99999 9999999999999999999876 899999999999999999999999999999999 999873 45789999
Q ss_pred CCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 429 PARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 429 ~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.+|++.||+++|||||+.||+++|++|+|+|++||||
T Consensus 484 ~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~i 521 (528)
T 3p9d_D 484 VRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRI 521 (528)
T ss_dssp SSSSSCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCccchHhccCeecHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987
No 17
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=100.00 E-value=1.3e-86 Score=711.86 Aligned_cols=401 Identities=19% Similarity=0.251 Sum_probs=370.6
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..||||+|+++||+||++ +++|++||+++||||||+||||++||+++.+++. |+||+.|++||++|++.++++
T Consensus 63 G~tIlk~i~v~hP~Akll------~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~ 136 (543)
T 1a6d_B 63 GVTILKEMDVEHPAAKMM------VEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRV 136 (543)
T ss_dssp HHHHHHHSCCCSHHHHHH------HHHHTCTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchHHHHH------HHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccCC--HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccC--Cc-------eeee--cCCCccceeEeEe
Q 012313 84 LDCQARKITT--FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN--DL-------ITIF--DRKALYNELNFVK 144 (466)
Q Consensus 84 L~~~~~~v~~--~~~l~~va~ts~~------~~~~l~~li~~a~~~vg~~--~~-------I~i~--~g~~~~d~~~lv~ 144 (466)
|++++.|++. .++|.++|+||++ +++.|++++++|+.+++++ |. |+|+ +|++.. ++++++
T Consensus 137 L~~~a~~v~~~~~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~-ds~lv~ 215 (543)
T 1a6d_B 137 IDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAID-DTQLIN 215 (543)
T ss_dssp HHHHCEECCTTHHHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGG-GCEEES
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCcc-ceeEEc
Confidence 9999999873 6889999998764 3578999999999999875 53 7877 788876 579999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHH-----------HHHHHHHHHcCCCE
Q 012313 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVI-----------RQASLPCMMQGQSL 200 (466)
Q Consensus 145 G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i-----------~~~l~~i~~~~~~l 200 (466)
||+|+++|.||||+ ..++||+|+++|++ |++++++ .++++++.+.|+||
T Consensus 216 G~v~dk~~~~~~m~-------~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~l 288 (543)
T 1a6d_B 216 GIIVDKEKVHPGMP-------DVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANV 288 (543)
T ss_dssp EEEESCCCSSTTSC-------SEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEecCCCCCCCc-------ceecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999984 26899999999998 7777665 78899999999999
Q ss_pred EEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE--
Q 012313 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-- 278 (466)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i-- 278 (466)
||++++|+++++++|..|+ |++|++. ++++|+|||++|||+++++ ++++++++||+|++|++
T Consensus 289 vi~~~~I~~~al~~L~~~~------I~av~~v-----~k~~le~ia~~tGa~iis~-----l~~l~~~~LG~a~~v~~~~ 352 (543)
T 1a6d_B 289 VITQKGIDDMAQHYLSRAG------IYAVRRV-----KKSDMDKLAKATGASIVST-----IDEISSSDLGTAERVEQVK 352 (543)
T ss_dssp EEESSCBCHHHHHHHHHTT------CEEECSC-----CHHHHHHHHHHHTCCEESC-----GGGCCGGGCEEEEEEEEEE
T ss_pred EEECCCcCHHHHHHHHHCC------eeEeccC-----CHHHHHHHHHHhCCceecc-----cccCCHHHCCCceEEEEEE
Confidence 9999999999999999864 8999877 6888999999999999996 89999999999999986
Q ss_pred -ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHH
Q 012313 279 -TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (466)
Q Consensus 279 -~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~ 357 (466)
++++|++|+||+++ +.|||+|||+|+++++|++|+++||+|++|++++
T Consensus 353 ig~~~~~~~~g~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a~~ 401 (543)
T 1a6d_B 353 VGEDYMTFVTGCKNP-------------------------------KAVSILVRGETEHVVDEMERSITDSLHVVASALE 401 (543)
T ss_dssp ETTEEEEEEEEESSS-------------------------------SCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCceEEEEecCCCC-------------------------------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999998764 4699999999999999999999999999999999
Q ss_pred cC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCC
Q 012313 358 EG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR 431 (466)
Q Consensus 358 ~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~ 431 (466)
+| +|||||++|++++.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+
T Consensus 402 ~~~ivpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~ 481 (543)
T 1a6d_B 402 DGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFT 481 (543)
T ss_dssp HCEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTT
T ss_pred CCCccCCccHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCeeEeCCC
Confidence 99 9999999999999999999864 899999999999999999999999999999999 999863 45689999999
Q ss_pred CccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 432 GNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 432 ~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|++.||++.|||||+.||+++|++|+|+|++||+|
T Consensus 482 g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 516 (543)
T 1a6d_B 482 GEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRI 516 (543)
T ss_dssp TEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHE
T ss_pred CcccchhhcCceecHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986
No 18
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=4.6e-86 Score=703.88 Aligned_cols=401 Identities=16% Similarity=0.192 Sum_probs=360.3
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|++.++++
T Consensus 53 G~tIlk~i~v~hP~akll------~~~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~ 126 (518)
T 3iyg_D 53 GATILKQMQVLHPAARML------VELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEI 126 (518)
T ss_pred HHHHHHHcccchHHHHHH------HHHHHHhhhhhCCCceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhcc---CCc-----eeee--cCCCccceeEeEee
Q 012313 84 LDCQARKIT--TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWE---NDL-----ITIF--DRKALYNELNFVKG 145 (466)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~~------~~l~~li~~a~~~vg~---~~~-----I~i~--~g~~~~d~~~lv~G 145 (466)
|++++.|++ +.+.|.++|+||++++ +.|++++++|+.+++. ++. |+|+ .|++. +++++++|
T Consensus 127 L~~~s~~v~~~~~~~l~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~-~ds~lv~G 205 (518)
T 3iyg_D 127 LTDMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTI-DDCELVEG 205 (518)
T ss_pred HHHheeeCCCCChHHHHHHhHhhhccccchhhHHHHHHHHHHHHHHhhccccCCCcccceEEEEEcCCCCh-hhheEecc
Confidence 999999987 7789999999999863 7899999999999985 444 6765 45555 46899999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHH-----------HHHHHHHHHHHcCCCEE
Q 012313 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSN-----------VIRQASLPCMMQGQSLL 201 (466)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~-----------~i~~~l~~i~~~~~~lv 201 (466)
|+|+++|.| .++. .++||+|++++.+ +++++ ++.++++++.+.|+|||
T Consensus 206 ~~~dk~~~~-~mp~-------~i~n~kIlll~~~Le~~k~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lv 277 (518)
T 3iyg_D 206 LVLTQKVAN-SGIT-------RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVL 277 (518)
T ss_pred EEEeccccc-CCCc-------cccCceEEEEEeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 999999998 3221 3455666555544 45554 46788999999999999
Q ss_pred EE-----ecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEE
Q 012313 202 VV-----AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV 276 (466)
Q Consensus 202 Ii-----~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v 276 (466)
|+ +++|+++++++|..| +|++||+|+ +.+|+|||++|||+++++ ++++++++||+|++|
T Consensus 278 i~~k~i~~~~I~~~Al~~L~~~------~I~av~~~~-----~~~le~ia~~tGa~ii~~-----l~~l~~~~LG~a~~v 341 (518)
T 3iyg_D 278 LIQKSILRDALSDLALHFLNKM------KIMVVKDIE-----REDIEFICKTIGTKPVAH-----VDQFTADMLGSAELA 341 (518)
T ss_pred EEeccccccCcCHHHHHHHHHc------CcEEEecCC-----HHHHHHHHHHhCCEEecc-----cccCCHHHCCcCcEE
Confidence 99 799999999999975 499999995 456999999999999997 899999999999999
Q ss_pred EE---ec-ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHH
Q 012313 277 IA---TM-DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAV 352 (466)
Q Consensus 277 ~i---~~-~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~ 352 (466)
++ ++ +++++|++|++ +++.|||+|||+|+++++|++|+++||+|++
T Consensus 342 ~~~~~g~~~~~~~~~g~~~------------------------------~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~ 391 (518)
T 3iyg_D 342 EEVSLNGSGKLIKITGCAS------------------------------PGKTVTIVVRGSNKLVIEEAERSIHDALCVI 391 (518)
T ss_pred EEEEeCCCceEEEEECCCC------------------------------CCceEEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 75 34 67899999865 1467999999999999999999999999999
Q ss_pred HHHHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCee
Q 012313 353 QAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLG 426 (466)
Q Consensus 353 r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G 426 (466)
|+++++| +|||||++|++++.+|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++ .+++++|
T Consensus 392 r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G 471 (518)
T 3iyg_D 392 RCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTG 471 (518)
T ss_pred HHHHhCCCEeecCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCcee
Confidence 9999998 9999999999999999999875 899999999999999999999999999999999 99987 2567899
Q ss_pred EeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 427 YNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 427 ~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
||+.+|++.||+++|||||+.||+++|++|+|+|++||||
T Consensus 472 ~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 511 (518)
T 3iyg_D 472 INVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKI 511 (518)
T ss_pred EeCCCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999997
No 19
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=3e-85 Score=697.13 Aligned_cols=407 Identities=15% Similarity=0.188 Sum_probs=361.2
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|++.++++
T Consensus 53 G~tIlk~i~v~hP~Akll------~e~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~ 126 (512)
T 3iyg_Q 53 AATILRELEVQHPAAKMI------VMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEI 126 (512)
T ss_pred HHHHHHHcccCCHHHHHH------HHHHHHhhhhhCCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred Hhhh----ccccCCHHHHHHHHHHhcCC-----ChhHHHHHHHHHHhhccC-Cceeee-------cCCCccceeEeEeeE
Q 012313 84 LDCQ----ARKITTFEEIAQVGTTAANG-----DGEIGELIAKVFEKGWEN-DLITIF-------DRKALYNELNFVKGM 146 (466)
Q Consensus 84 L~~~----~~~v~~~~~l~~va~ts~~~-----~~~l~~li~~a~~~vg~~-~~I~i~-------~g~~~~d~~~lv~G~ 146 (466)
|+++ +.++++.++|.++|+||+++ ++.|++++++|+.+++++ +.|.++ .|++. +++++++||
T Consensus 127 L~~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~i~~livdAv~~V~~~~~~i~v~~I~i~k~~Ggs~-~ds~lv~G~ 205 (512)
T 3iyg_Q 127 LPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGV-HSSSVLHGM 205 (512)
T ss_pred HHHhhcccCCCCCCHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHhccCCcccHhHeeEeeccCCCc-ccceEEeeE
Confidence 9998 56677889999999999986 688999999999999876 444443 37776 578999999
Q ss_pred EEeccccCCcccccccccee-eecCce-EEEeccc----cCCHHHHHHH-------HH----HHHHcCCCEEEEecccch
Q 012313 147 KLEWGLKSPYFFTHKNKKEC-VLDGAL-VLIYDTK----ISNSNVIRQA-------SL----PCMMQGQSLLVVAEDVEN 209 (466)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~-~l~~~~-Il~~d~~----i~~~~~i~~~-------l~----~i~~~~~~lvIi~~~i~~ 209 (466)
+|+++|.+ |+++.+..++ .+.+|. +..++.+ |++++++.++ ++ ++.++|+||||++++|++
T Consensus 206 ~~dk~~~~--~~~~~~n~kI~ll~~~le~~~~e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~ 283 (512)
T 3iyg_Q 206 VFKKETEG--DVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVAD 283 (512)
T ss_pred EEecCcCC--CCcccccCceEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccH
Confidence 99999976 6654442222 345554 5555555 7888888776 55 888999999999999999
Q ss_pred hhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---ecceEEEE
Q 012313 210 EVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TMDNVVII 286 (466)
Q Consensus 210 ~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~ 286 (466)
.++++|.. .+|++||+|+ +.+|+|||++|||+++++ ++++++++||+|++|++ +++++++|
T Consensus 284 la~~~l~k------~~I~av~~~~-----~~dle~ia~~tGa~iis~-----l~~~~~~~LG~a~~v~~~~~g~~~~~~~ 347 (512)
T 3iyg_Q 284 MALHYANK------YNIMLVRLNS-----KWDLRRLCKTVGATALPR-----LNPPVLEEMGHCDSVYLSEVGDTQVVVF 347 (512)
T ss_pred HHHHHHHH------CCeEEEEeCC-----HHHHHHHHHHhCCEEecc-----cccCCHHHCCcccEEEEEEeCCeEEEEE
Confidence 99987764 4599999996 445999999999999996 89999999999999976 45689999
Q ss_pred cCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcCCch
Q 012313 287 GGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSG 365 (466)
Q Consensus 287 ~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~g-vVpGGG 365 (466)
.+|+. +|+.|||+|||+|+++++|++|+++||||++|+++++| +|||||
T Consensus 348 ~~~~~------------------------------~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGG 397 (512)
T 3iyg_Q 348 KHEKE------------------------------DGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGG 397 (512)
T ss_pred EcccC------------------------------CCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCc
Confidence 98753 25689999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC--cccccc
Q 012313 366 VALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG--NYVDMF 438 (466)
Q Consensus 366 a~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~~--~~~d~~ 438 (466)
++|+++|.+|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++. +++++|||+.+| ++.||+
T Consensus 398 a~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~~~g~~~d~~ 477 (512)
T 3iyg_Q 398 ATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDML 477 (512)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCcEEEecCCCCCcccchH
Confidence 9999999999999875 899999999999999999999999999999999 999873 567899999965 999999
Q ss_pred ccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 439 KCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 439 ~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
++|||||+.||+++|++|+|+|++||||
T Consensus 478 ~~gI~dp~~vk~~al~~A~~~a~~iL~i 505 (512)
T 3iyg_Q 478 EAGVLDTYLGKYWAIKLATNAAVTVLRV 505 (512)
T ss_pred hccCeEcHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999986
No 20
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=5.9e-85 Score=694.85 Aligned_cols=401 Identities=12% Similarity=0.154 Sum_probs=361.9
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|++.++++
T Consensus 51 G~tIlk~i~v~hP~Akll------~e~a~~qd~e~GDGTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~ 124 (515)
T 3iyg_G 51 GNAILREIQVQHPAAKSM------IEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIST 124 (515)
T ss_pred HHHHHHhcccCCHHHHHH------HHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC--C--------ceeee--cCCCccceeEeE
Q 012313 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--D--------LITIF--DRKALYNELNFV 143 (466)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~--~--------~I~i~--~g~~~~d~~~lv 143 (466)
|++++.|++ +.+.|.++|+||+++ .+.+++++++|+..+..+ + .|.|+ +|++.. +++++
T Consensus 125 L~~~s~~v~~~~~~~l~~va~tsl~sK~i~~~~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~-ds~lv 203 (515)
T 3iyg_G 125 LKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIE-DSCVL 203 (515)
T ss_pred HHHhhcccCCCCHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhcccccCCCcccchhheeEEEEecCCCcc-cceEE
Confidence 999999986 468899999999874 245678999999887622 2 15554 577775 68999
Q ss_pred eeEEEeccccCCccccccccceeeecCceEEEecc-------------ccCCHHHHHHHHH-----------HHHHcCCC
Q 012313 144 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-------------KISNSNVIRQASL-----------PCMMQGQS 199 (466)
Q Consensus 144 ~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~-------------~i~~~~~i~~~l~-----------~i~~~~~~ 199 (466)
+||+|+++|.||.|+ .+++||+|+++|+ +|++++++.++++ ++.+.|.+
T Consensus 204 ~G~v~dk~~~~~~m~-------~~ien~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~ 276 (515)
T 3iyg_G 204 RGVMINKDVTHPRMR-------RYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPD 276 (515)
T ss_pred eeEEEeCCCCCCCCc-------ceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999763 4799999999998 5778888888877 88899988
Q ss_pred EEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee-eeEEEE
Q 012313 200 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVIA 278 (466)
Q Consensus 200 lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~-~~~v~i 278 (466)
++|++++|++.++++|..+ +|+++++. ++++|+|||++|||+++++ ++++++++||+ |+.|++
T Consensus 277 vIi~~~~I~~~al~~L~~~------~I~av~~~-----~k~~leria~~tGa~ii~~-----l~~l~~~~LG~~a~~v~~ 340 (515)
T 3iyg_G 277 VVITEKGISDLAQHYLMRA------NITAIRRV-----RKTDNNRIARACGARIVSR-----PEELREEDVGTGAGLLEI 340 (515)
T ss_pred EEEECCccCHHHHHHHHHC------CceeeccC-----CHHHHHHHHHHhCCeeecc-----ccccChhhcCCcccEEEE
Confidence 8899999999999988863 48898876 6888999999999999997 89999999999 999975
Q ss_pred ---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHH
Q 012313 279 ---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (466)
Q Consensus 279 ---~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a 355 (466)
++++|+||+||+++. .|||+|||+|+++++|++|+++||||++|++
T Consensus 341 ~~~g~~~~~~i~g~~~~~-------------------------------~~TIllrG~t~~~l~E~er~i~Dal~~~r~~ 389 (515)
T 3iyg_G 341 KKIGDEYFTFITECKDPK-------------------------------ACTILLRGASKEILSEVERNLQDAMQVCRNV 389 (515)
T ss_pred EEECCceEEEEeCCCCCC-------------------------------eEEEEEcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999998763 5899999999999999999999999999999
Q ss_pred HHc-CCcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc----CCCCeeEe
Q 012313 356 KEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----DSSDLGYN 428 (466)
Q Consensus 356 ~~~-gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~----~~~~~G~d 428 (466)
+++ ++|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||
T Consensus 390 ~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~eq~~i~~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d 469 (515)
T 3iyg_G 390 LLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVN 469 (515)
T ss_pred hhCCcEEeCCCHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 976 59999999999999999999875 899999999999999999999999999999999 999873 24579999
Q ss_pred CCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 429 PARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 429 ~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+.+|++.||+++|||||+.||+++|++|+|+|++||||
T Consensus 470 ~~~g~~~d~~~~gi~dp~~vk~~al~~A~e~a~~iL~i 507 (515)
T 3iyg_G 470 GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRI 507 (515)
T ss_pred CCCCcccccHHcCCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986
No 21
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=100.00 E-value=1e-85 Score=706.38 Aligned_cols=407 Identities=19% Similarity=0.202 Sum_probs=361.7
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..||||+|+++||+||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|++.++++
T Consensus 87 G~tIlk~i~v~hP~Akll------~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~ 160 (562)
T 3p9d_E 87 GATILSQMELDNEIAKLL------VQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISK 160 (562)
T ss_dssp HHHHHHHSCCCSHHHHHH------HHHHHHHHHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHH------HHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccCC------HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-------Cceeee--cCCCccceeEe
Q 012313 84 LDCQARKITT------FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-------DLITIF--DRKALYNELNF 142 (466)
Q Consensus 84 L~~~~~~v~~------~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~-------~~I~i~--~g~~~~d~~~l 142 (466)
|+++++|+++ ++.|.++|+||+++ .+.|++++++|+..+... +.|+|+ .|++..| +++
T Consensus 161 L~~~s~~v~~~~~~~~~e~L~~vA~tSl~sK~i~~~~d~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Ggs~~d-s~l 239 (562)
T 3p9d_E 161 LEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISD-SKL 239 (562)
T ss_dssp TTTTTSSSSBCCCSSCHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSSCGGG-CEE
T ss_pred HHHhccCcCCCcchhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHheeecccccCCCCcccEEEEEecCCChhh-hce
Confidence 9999998863 16899999999974 357899999999988642 346665 5877764 799
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEecc-------------ccCCHHH-----------HHHHHHHHHHcCC
Q 012313 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-------------KISNSNV-----------IRQASLPCMMQGQ 198 (466)
Q Consensus 143 v~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~-------------~i~~~~~-----------i~~~l~~i~~~~~ 198 (466)
++||+|+++|.||||+++.+ .+..+++|+|++++. +|+++++ +.++++++.++|+
T Consensus 240 veGmv~dk~~~sp~m~~~~~-~~~~~~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~ 318 (562)
T 3p9d_E 240 INGVILDKDFSHPQMPKCVL-PKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGA 318 (562)
T ss_dssp ESSEEESSCCCTTSCCC------TTCSSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred eeeEEEecCCCCCCcCcccc-cccccccceEEEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999987541 011235666655554 3556555 6789999999999
Q ss_pred CEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE
Q 012313 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA 278 (466)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i 278 (466)
||||++++|+++++++|..|+ |++++++ ++++|+|||++|||+++++ ++++++++||+|++|++
T Consensus 319 ~vvI~~~~I~~~Al~~L~~~~------I~~v~~v-----~k~~le~ia~~TGa~iis~-----l~~l~~~~LG~a~~v~~ 382 (562)
T 3p9d_E 319 DVVICQWGFDDEANHLLLQND------LPAVRWV-----GGQELEHIAISTNGRIVPR-----FQDLSKDKLGTCSRIYE 382 (562)
T ss_dssp SCCEECSSCCSHHHHHHHTTT------CCCEECC-----CTTTHHHHHHHHCCCEEES-----SSCCCTTSCEECSCEEE
T ss_pred cEEEEeCCCCHHHHHHHHHCC------CEEEecc-----CHHHHHHHHHHhCCEEEec-----cccCCHHHCCcceEEEE
Confidence 999999999999999999876 6678988 4667999999999999996 89999999999999987
Q ss_pred -----ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHH
Q 012313 279 -----TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ 353 (466)
Q Consensus 279 -----~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r 353 (466)
++++++||+||+++. .|||+|||+|+++++|++|+++||+|++|
T Consensus 383 ~~ig~~~~~~~~i~g~~~~~-------------------------------~~TIllrG~te~~l~E~kr~i~DAL~~~r 431 (562)
T 3p9d_E 383 QEFGTTKDRMLIIEQSKETK-------------------------------TVTCFVRGSNKMIVDEAERALHDSLCVVR 431 (562)
T ss_dssp ECCSSSSCCEEEECCCSCCS-------------------------------CCEEEEECTTTTTHHHHTHHHHHHHHHHH
T ss_pred EEeccCCceEEEEecCCCCC-------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 358899999998753 58999999999999999999999999999
Q ss_pred HHHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc----CCCCee
Q 012313 354 AAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----DSSDLG 426 (466)
Q Consensus 354 ~a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~----~~~~~G 426 (466)
+++++| +|||||++|++++.+|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++. +++++|
T Consensus 432 ~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~G 511 (562)
T 3p9d_E 432 NLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIG 511 (562)
T ss_dssp HHHHSCCEEETTTHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHHHHHHTTTSSBC
T ss_pred HHHhCCCcCCCCcHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCcee
Confidence 999999 9999999999999999999875 899999999999999999999999999999999 999862 457899
Q ss_pred EeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 427 YNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 427 ~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
||+.+|++.||+++|||||+.||+++|++|+|+|++||||
T Consensus 512 ~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~i 551 (562)
T 3p9d_E 512 VDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKI 551 (562)
T ss_dssp CBTTTTBCCBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred EecCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986
No 22
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=5.6e-85 Score=694.91 Aligned_cols=400 Identities=17% Similarity=0.230 Sum_probs=354.1
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|++.++++
T Consensus 52 G~tIlk~i~v~hp~akll------~~~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~ 125 (517)
T 3iyg_Z 52 GNVLLHEMQIQHPTASLI------AKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQF 125 (517)
T ss_pred HHHHHHHccCcCHHHHHH------HHHHHHHHHHhCCCceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC-CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCC------ceeee--cCCCccceeEeEeeEEE
Q 012313 84 LDCQARKIT-TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND------LITIF--DRKALYNELNFVKGMKL 148 (466)
Q Consensus 84 L~~~~~~v~-~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~~------~I~i~--~g~~~~d~~~lv~G~~~ 148 (466)
|++++.|++ +.+.|.++|+||+++ .+.|++++++|+..+...+ .|+|. +|++. +++++++||+|
T Consensus 126 L~~~s~~v~~~~~~L~~va~tsl~sKi~~~~~d~la~l~vdaV~~V~~~~~~~dl~~I~I~k~~Gg~~-~ds~lv~G~v~ 204 (517)
T 3iyg_Z 126 LEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSE-TDTSLIRGLVL 204 (517)
T ss_pred HHhhCcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHHHHhheeccCCCcCChhHheeeeecCCCc-cccceEeeEEE
Confidence 999999987 788999999999874 3578888888888775421 24443 46555 56899999999
Q ss_pred eccccCCccccccccceeeecCceEEEecccc-------------CCHHHHHH-----------HHHHHHH--------c
Q 012313 149 EWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNSNVIRQ-----------ASLPCMM--------Q 196 (466)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i-------------~~~~~i~~-----------~l~~i~~--------~ 196 (466)
+++|.||+|+ .+++||+|+++|.++ ++++++.+ .++++.. .
T Consensus 205 dk~~~~p~m~-------~~ien~kIll~~~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~ 277 (517)
T 3iyg_Z 205 DHGARHPDMK-------KRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDS 277 (517)
T ss_pred eccCCCCCcc-------ccccCCeEEEecccccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 9999999864 478999999999865 33443332 3444433 3
Q ss_pred CCCEEEE-ecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCC-ceeee
Q 012313 197 GQSLLVV-AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLK-LGSCK 274 (466)
Q Consensus 197 ~~~lvIi-~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~-lG~~~ 274 (466)
++|+||+ +++|+++++++|..+ +|++++++ ++.+|+|||++|||+++++ ++++++++ ||+|+
T Consensus 278 ~~~lvIi~~~~I~d~al~~L~~~------gI~~v~~v-----~~~~leria~~tGa~iv~~-----l~~l~~~~~LG~a~ 341 (517)
T 3iyg_Z 278 DKGFVVINQKGIDPFSLDALAKE------GIIALRRA-----KRRNMERLTLACGGIALNS-----LDDLNPDCLLGHAG 341 (517)
T ss_pred CCceEEEecccCCHHHHHHHHHC------CCEEEEec-----CHHHHHHHHHHhCCEEecc-----hhhCcccccCCcce
Confidence 5676665 589999999999875 48999988 4667999999999999996 89999999 99999
Q ss_pred EE---EEecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHH
Q 012313 275 RV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHA 351 (466)
Q Consensus 275 ~v---~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a 351 (466)
| ++++++++||++|++++ .|||+|||+|+++++|++|+++||+|+
T Consensus 342 -v~e~~ig~~~~~~~~g~~~~~-------------------------------~~TI~lrG~t~~~l~E~kr~l~DAl~~ 389 (517)
T 3iyg_Z 342 -VYEYTLGEEKFTFIEKCNNPR-------------------------------SVTLLIKGPNKHTLTQIKDAIRDGLRA 389 (517)
T ss_pred -EEEEEEcCceEEEEeCCCCch-------------------------------hheeeecCCcHHHHHHHHHHHHHHHHH
Confidence 9 57889999999998764 379999999999999999999999999
Q ss_pred HHHHHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCe
Q 012313 352 VQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDL 425 (466)
Q Consensus 352 ~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~ 425 (466)
+|+++++| +|||||++|+++|++|++++.. ++++|+|+++|++||+.+|++||+|||+|+.++ .+|++. +++++
T Consensus 390 ~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~~~~~~ 469 (517)
T 3iyg_Z 390 VKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLV 469 (517)
T ss_pred HHHHHhcceEecCccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcE
Confidence 99999999 9999999999999999999876 899999999999999999999999999999999 999873 46789
Q ss_pred eEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 426 GYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 426 G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
|||+.+|++.||+++|||||+.||+++|++|+|+|++||||
T Consensus 470 G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 510 (517)
T 3iyg_Z 470 GVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLV 510 (517)
T ss_pred EEeCCCCcccchhhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986
No 23
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=100.00 E-value=1.9e-86 Score=710.39 Aligned_cols=403 Identities=16% Similarity=0.161 Sum_probs=363.8
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..||||+|+++||+||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|++.++++
T Consensus 66 G~TIlk~i~v~hP~Akll------~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~ 139 (550)
T 3p9d_G 66 GATILKLLDVVHPAAKTL------VDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEK 139 (550)
T ss_dssp HHHHTTTSCCCSHHHHHH------HHHHHHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHH------HHHHHHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC--C---HHHHHHHHHHhcC------CChhHHHHHHHHHHhhcc-C------CceeeecCCCccceeEeEee
Q 012313 84 LDCQARKIT--T---FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWE-N------DLITIFDRKALYNELNFVKG 145 (466)
Q Consensus 84 L~~~~~~v~--~---~~~l~~va~ts~~------~~~~l~~li~~a~~~vg~-~------~~I~i~~g~~~~d~~~lv~G 145 (466)
|+++++|++ + .+.|.++|+||++ +++.|++++++|+.++++ + +.+.+ +|+++.| +++++|
T Consensus 140 L~~~s~~v~~~~~~~~~~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~dl~~I~Vikv-~Gg~~~d-s~lv~G 217 (550)
T 3p9d_G 140 INELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDRNDLDDKLIGIKKI-PGGAMEE-SLFING 217 (550)
T ss_dssp HHHSEECCCCC------CHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHCCSSSCCGGGCCCCBC-CSSCGGG-CCCCSS
T ss_pred HHHhcccCCCCcchhHHHHHHHHHHhccCccccccHhHHHHHHHHHHHHhCccccCchheeEEEe-cCCCccc-eeEEee
Confidence 999999986 3 5689999999864 267899999999999984 3 33444 4777765 599999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHHHH-----------HHHHHHHcCCCEE
Q 012313 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQ-----------ASLPCMMQGQSLL 201 (466)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i~~-----------~l~~i~~~~~~lv 201 (466)
|+|+++|.||||.+.|+ .++||+|+++|++ |++++++.+ +++++.++|++||
T Consensus 218 ~~~dk~~~s~yf~~~~~----~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vV 293 (550)
T 3p9d_G 218 VAFKKTFSYAGFEQQPK----KFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIV 293 (550)
T ss_dssp EEECCCSSCTTCSCSCS----CCSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEE
T ss_pred EEEeccccccccccCcc----cccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999987665 5999999999987 456655544 6788999999999
Q ss_pred EEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---
Q 012313 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA--- 278 (466)
Q Consensus 202 Ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i--- 278 (466)
|++++|++.++++|..+ +|+++++. ++.+++|||++|||+++++ ++++++++||+|++|++
T Consensus 294 i~~~~I~dla~~~L~~~------gI~~v~~v-----~k~~lerIa~~tGa~iis~-----l~~l~~~~LG~a~~v~~~~i 357 (550)
T 3p9d_G 294 LSKLPIGDLATQFFADR------NIFCAGRV-----SADDMNRVIQAVGGSIQST-----TSDIKPEHLGTCALFEEMQI 357 (550)
T ss_dssp EESSCCCHHHHHTTGGG------TCEEEECC-----CTTHHHHHHHHTCCCCBSS-----GGGCCGGGCCCCSBCCCCCC
T ss_pred EECCCccHHHHHHHHHc------CCccccCc-----CHHHHHHHHHHhCCceecc-----hhhCCHHHcCCceEEEEEEe
Confidence 99999999998877743 48899887 5778999999999999996 89999999999999976
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc
Q 012313 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (466)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~ 358 (466)
+++++++|.||+++ +.|||+|||+|+++++|++|+++||||++|+++++
T Consensus 358 g~e~~~~~~g~~~~-------------------------------~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~ 406 (550)
T 3p9d_G 358 GSERYNLFQGCPQA-------------------------------KTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQN 406 (550)
T ss_dssp SSSCCEEEBCCTTC-------------------------------CCCCCCBCSSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCeEEEEEecCCCC-------------------------------ceeEEEEeCCcHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 67899999998764 46899999999999999999999999999999999
Q ss_pred C-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 012313 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (466)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~~ 432 (466)
| +|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ ++|++. +++++|||+.+|
T Consensus 407 g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g 486 (550)
T 3p9d_G 407 KLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETE 486 (550)
T ss_dssp CCEEETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHHSCSCCCBCSSSS
T ss_pred CCcccCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeeeCCCC
Confidence 9 9999999999999999999765 899999999999999999999999999999999 999873 567899999999
Q ss_pred ccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 433 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 433 ~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
++.||+++|||||+.||+++|++|+|+|++||+|
T Consensus 487 ~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~i 520 (550)
T 3p9d_G 487 NIGDNFAKFVWEPALVKINALNSATEATNLILSV 520 (550)
T ss_dssp SBCCHHHHTCEEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred cccchHhccCEecHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999986
No 24
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=100.00 E-value=6.1e-86 Score=704.65 Aligned_cols=400 Identities=19% Similarity=0.213 Sum_probs=365.0
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc--CCChHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG--RANLTGLTQGFRMAADAVVR 82 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~--g~~P~~I~~G~~~a~~~~~~ 82 (466)
..||||+|+++||+||++ +++|++||+++||||||+||||++||++|.+++. |+||+.|++||++|++.+++
T Consensus 60 G~tIlk~i~~~hP~Akll------~e~a~~qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~ 133 (527)
T 3p9d_B 60 GATILKSIPLDNPAAKVL------VNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALD 133 (527)
T ss_dssp HHHHHHTCCCCCHHHHHH------HHHHHHHHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHH------HHHHHHhHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999997 99999999999999999999
Q ss_pred HHhhhccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCC---ceeeec--CCCccceeEeEeeE
Q 012313 83 NLDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND---LITIFD--RKALYNELNFVKGM 146 (466)
Q Consensus 83 ~L~~~~~~v~~-----~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~~---~I~i~~--g~~~~d~~~lv~G~ 146 (466)
+|+++++++++ .++|.++|+||+++ ++.|++++++|+.++++++ .|+|++ |++.. ++++++||
T Consensus 134 ~L~~~s~~v~~~~~~~~~~l~~vA~tSl~sK~~~~~~~~i~~li~dAv~~V~~~~~~~~I~V~k~~gg~~~-ds~lv~G~ 212 (527)
T 3p9d_B 134 ALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLS-DSFLDEGF 212 (527)
T ss_dssp HHHHTCBCCCCCHHHHHHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHTTCTTCCTTSSCCCBCCCSSSS-CCCEESSC
T ss_pred HHHHhCccCCCcchhhHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHhcccCCcceEEEEEcCCCCcc-ccEEEEeE
Confidence 99999999875 68899999999985 5789999999999999886 788874 66654 58999999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccc--------------cCCHHHH-----------HHHHHHHHHcCCCEE
Q 012313 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK--------------ISNSNVI-----------RQASLPCMMQGQSLL 201 (466)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~--------------i~~~~~i-----------~~~l~~i~~~~~~lv 201 (466)
+||++|.+|| |+ .++||+|++++.+ +++++++ ++.++++.++|+|||
T Consensus 213 ~~dk~~~~~~----p~----~~~n~kIlll~~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vv 284 (527)
T 3p9d_B 213 ILAKKFGNNQ----PK----RIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTF 284 (527)
T ss_dssp CCSCCCSSSC----CS----CCSSCEEEEECSCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEE
T ss_pred EEecccCCCC----Ce----eeecceEEEeccccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999997 22 4689999987754 4455554 678899999999999
Q ss_pred EEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---E
Q 012313 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---A 278 (466)
Q Consensus 202 Ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~---i 278 (466)
|++++|++.++++|..|+ |++|++++ +.+|+|||++|||+++++ ++++++++||+|++|+ +
T Consensus 285 i~~~~I~~~al~~L~~~~------i~av~~~~-----~~dle~ia~~tGa~iv~~-----~~~~~~~~LG~a~~v~~~~i 348 (527)
T 3p9d_B 285 INRQLIYDYPEQLFTDLG------INSIEHAD-----FEGVERLALVTGGEVVST-----FDEPSKCKLGECDVIEEIML 348 (527)
T ss_dssp ESSCCCTTTHHHHHHHTC------BCCCCCCH-----HHHHHHHHHHTCCCCCST-----TSCCTTSCEECSBCCBCCCS
T ss_pred EECCCCCHHHHHHHHHCC------CEEEecCC-----HHHHHHHHHHhCCEEecc-----hhhCCHHHCCCCcEEEEEEe
Confidence 999999999999999864 89999994 556999999999999997 8999999999999997 5
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc
Q 012313 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (466)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~a~r~a~~~ 358 (466)
+++++++|.||+++ +.|||+|||+|+++++|++|+++||+|++|+++++
T Consensus 349 g~~~~~~~~g~~~~-------------------------------~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~av~~ 397 (527)
T 3p9d_B 349 GEQPFLKFSGCKAG-------------------------------EACTIVLRGATDQTLDEAERSLHDALSVLSQTTKE 397 (527)
T ss_dssp SSCCBCCBCSSCCS-------------------------------CCEECBCCTTCTTHHHHHHTHHHHHHHHHHHHHHC
T ss_pred cceEEEEEECCCCC-------------------------------CEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78899999998753 57999999999999999999999999999999999
Q ss_pred C-CcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 012313 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (466)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~~ 432 (466)
| +|||||++|++++.+|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++. +++++|||+.+|
T Consensus 398 g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g 477 (527)
T 3p9d_B 398 TRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNG 477 (527)
T ss_dssp CCEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHTCSCCCCCSSST
T ss_pred CCcccCCcHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCceeEECCCC
Confidence 9 9999999999999999999865 899999999999999999999999999999999 999873 567899999999
Q ss_pred ccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 433 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 433 ~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
++.||+++|||||+.||+++|++|+|+|++||||
T Consensus 478 ~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~i 511 (527)
T 3p9d_B 478 TIADMRQLGIVESYKLKRAVVSSASEAAEVLLRV 511 (527)
T ss_dssp TCCCHHHHTCEEETTHHHHHHHHHHHHHHHHHHC
T ss_pred CCcchHhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999986
No 25
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=100.00 E-value=4.4e-84 Score=692.59 Aligned_cols=401 Identities=17% Similarity=0.217 Sum_probs=351.0
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|++.++++
T Consensus 59 G~tIlk~i~v~hP~akll------~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~ 132 (546)
T 3p9d_F 59 GKVLLTEMQIQSPTAVLI------ARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKF 132 (546)
T ss_dssp HHHHHHTSCCCCHHHHHH------HHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCcCHHHHHH------HHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred HhhhccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-------Cceeee--cCCCccceeEeEe
Q 012313 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-------DLITIF--DRKALYNELNFVK 144 (466)
Q Consensus 84 L~~~~~~v~----~~~~l~~va~ts~~~------~~~l~~li~~a~~~vg~~-------~~I~i~--~g~~~~d~~~lv~ 144 (466)
|++++.|++ +.+.|.++|+||+++ .+.|++++++|+..+.+. ..|++. +|++. +++++++
T Consensus 133 L~~~a~~v~~~~~~~~~L~~vA~tsl~sKi~~~~~d~la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~-~ds~lv~ 211 (546)
T 3p9d_F 133 LDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSP-KDTTFIK 211 (546)
T ss_dssp HHHHCCCCSSSSTTCHHHHHHHHHHTCSTTHHHHCSSHHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCT-TTCCCCS
T ss_pred HHHhhccccccccCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhheEeecCCCCcccchheEEEEecCCCc-cccEEEe
Confidence 999999884 678999999999984 467899999999887531 135554 46655 4689999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEeccccC-------------CHHH-----------HHHHHHHHHH-----
Q 012313 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS-------------NSNV-----------IRQASLPCMM----- 195 (466)
Q Consensus 145 G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~-------------~~~~-----------i~~~l~~i~~----- 195 (466)
||+|+++|.+|+|+ .+++||+|+++|++++ ++++ +...++.+..
T Consensus 212 G~v~dk~~~~~~m~-------~~~en~kIll~~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v 284 (546)
T 3p9d_F 212 GLVLDHGGRHPDMP-------TRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEV 284 (546)
T ss_dssp SCEESCCCCSSSSC-------SSBCSCCCCEECCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred eEEEecccccccCc-------ceecCceEEEecCcccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999763 4789999999997643 2221 2234455543
Q ss_pred ----cCCCEEE-EecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCc
Q 012313 196 ----QGQSLLV-VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKL 270 (466)
Q Consensus 196 ----~~~~lvI-i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~l 270 (466)
+|+|+|| ++++|+++++++|..|+ |+++|++ ++.+|+|||++|||+++++ ++++++++|
T Consensus 285 ~~~~~g~~~vIi~~k~I~~~Al~~L~~~g------I~~vr~v-----~~~~leria~~tGa~ii~~-----l~~l~~~~L 348 (546)
T 3p9d_F 285 CGMDPDKGFVIINQKGIDPMSLDVFAKHN------ILALRRA-----KRRNMERLQLVTGGEAQNS-----VEDLSPQIL 348 (546)
T ss_dssp --------CEEEESSCCCHHHHHHHTTTT------CEEECCC-----CHHHHHHHHHTTTBCCCCC-----CSSCSTTCC
T ss_pred hhhccCCceEEEecCcCcHHHHHHHHHCC------CeeEecC-----CHHHHHHHHHHhCCEEecc-----hhhCCHhHC
Confidence 4677554 45799999999999874 7899987 4667999999999999996 899999999
Q ss_pred eeeeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHH
Q 012313 271 GSCKRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITN 347 (466)
Q Consensus 271 G~~~~v---~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~D 347 (466)
|+|++| .+++++|+||+||++++ .|||+|||+|+++++|++|+++|
T Consensus 349 G~a~~v~~~~ig~~~~~~i~g~~~~~-------------------------------~~tI~lrG~te~~l~E~kr~l~D 397 (546)
T 3p9d_F 349 GFSGLVYQETIGEEKFTYVTENTDPK-------------------------------SCTILIKGSTHYALAQTKDAVRD 397 (546)
T ss_dssp BCCCCBCBCCCSSCCCEECSSCSCCS-------------------------------CEEEECCCSCHHHHHHHHHHHHH
T ss_pred CcccEEEEEEecCceEEEEecCCCCc-------------------------------eEEEEECCCCHHHHHHHHHHHHH
Confidence 999999 47889999999998764 58999999999999999999999
Q ss_pred HHHHHHHHHHcC-CcCCchHHHHHHHHHHHh---hcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc-
Q 012313 348 ALHAVQAAKEEG-IVPGSGVALLYASKELDK---LQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ- 420 (466)
Q Consensus 348 al~a~r~a~~~g-vVpGGGa~e~~~s~~L~~---~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~- 420 (466)
|||++|+++++| +|||||++|+++|.+|++ |+.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++.
T Consensus 398 Al~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h 477 (546)
T 3p9d_F 398 GLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDEL 477 (546)
T ss_dssp HHHHHHHHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHH
T ss_pred HHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 999999999998 999999999999999998 5665 899999999999999999999999999999999 999863
Q ss_pred -------CCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 421 -------DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 421 -------~~~~~G~d~~~~~~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+++++|||+.+|++.||+++|||||+.||+++|++|+|+|++||||
T Consensus 478 ~~~~~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~i 530 (546)
T 3p9d_F 478 DDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLC 530 (546)
T ss_dssp HHHTTSTTSSCCCCBTTTTBCCCSGGGTCEEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred hhhhcccCCceeeEeCCCCeecchHhccCEecHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999986
No 26
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=100.00 E-value=7.9e-84 Score=692.60 Aligned_cols=401 Identities=15% Similarity=0.150 Sum_probs=358.1
Q ss_pred HHHhhccccccCccccccccchhhhhhhhhhcccccCCcchHHHhhHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHH
Q 012313 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (466)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~a~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (466)
..|||++|+++||+||++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||++|++.++++
T Consensus 68 G~TIlk~i~v~hP~Akll------~e~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~ 141 (568)
T 3p9d_H 68 AATMLRELDIVHPAVKVL------VMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKE 141 (568)
T ss_dssp HHHHTTTCCCCCHHHHHH------HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCCHHHHHH------HHHHHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 5889999999999999999999999999999999 999999999999999999999
Q ss_pred Hhhhcccc----CCHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccC-----C-------ceeeec--CCCcccee
Q 012313 84 LDCQARKI----TTFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEN-----D-------LITIFD--RKALYNEL 140 (466)
Q Consensus 84 L~~~~~~v----~~~~~l~~va~ts~~-----~~~~l~~li~~a~~~vg~~-----~-------~I~i~~--g~~~~d~~ 140 (466)
|++++.++ .+.+.|.++|+||++ ++++|++++++|+.+++++ + .|+|++ |++..| +
T Consensus 142 L~~~a~~v~~~~~~~~~l~~va~tsl~sK~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~d-S 220 (568)
T 3p9d_H 142 LDEMVVGEITDKNDKNELLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSN-S 220 (568)
T ss_dssp HHHHCCSCCCCCCTTHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGG-C
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcch-h
Confidence 99999876 567899999999874 3578999999999999764 3 477764 888764 7
Q ss_pred EeEeeEEEeccccCCccccccccceeeec---CceEEEeccc-------------cCCHHHHHH-----------HHHHH
Q 012313 141 NFVKGMKLEWGLKSPYFFTHKNKKECVLD---GALVLIYDTK-------------ISNSNVIRQ-----------ASLPC 193 (466)
Q Consensus 141 ~lv~G~~~~~~~~~~~~~~~~~~~~~~l~---~~~Il~~d~~-------------i~~~~~i~~-----------~l~~i 193 (466)
++++|++|+++|. .| +..++ ||+|++++++ |++++++.+ +++++
T Consensus 221 ~lv~G~v~dk~~~--~m-------~~~i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I 291 (568)
T 3p9d_H 221 TVIKGMVFNREPE--GH-------VKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEI 291 (568)
T ss_dssp EEESSCCBSSCBS--SG-------GGSCCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeccEEEeeccc--CC-------cEEEecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999974 23 34677 9999999986 667776654 68889
Q ss_pred HHcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceee
Q 012313 194 MMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSC 273 (466)
Q Consensus 194 ~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~ 273 (466)
.+.|+||||++++|++.++++|..+ +|++||+++ +.+|+|||++|||+++++ ++++++++||+|
T Consensus 292 ~~~g~~vvi~~~~I~~~al~~L~~~------gI~av~~v~-----~~~leria~~tGa~ivs~-----l~~l~~~~LG~a 355 (568)
T 3p9d_H 292 ADMGVECIVAGAGVGELALHYLNRY------GILVLKVPS-----KFELRRLCRVCGATPLPR-----LGAPTPEELGLV 355 (568)
T ss_dssp HHTTCCEEEECSCCCHHHHHHHHHH------TCEEECCCC-----HHHHHHHHHHHSCCCCSS-----SSCCCGGGCEEC
T ss_pred HhcCCeEEEECCCcChHHHHHHHHC------CeEEEecCC-----HHHHHHHHHHhCCEEEec-----cccCCHHHCCcc
Confidence 9999999999999999999999876 499999994 667999999999999997 899999999999
Q ss_pred eEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHH
Q 012313 274 KRVIA---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALH 350 (466)
Q Consensus 274 ~~v~i---~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~~l~E~~r~l~Dal~ 350 (466)
++|++ ++++++||++|+. |+++.|||+|||+|+++++|.+|+++||+|
T Consensus 356 ~~v~~~~ig~~~~~~~~g~~~-----------------------------l~~~~~TIllrG~t~~~l~E~er~i~DAL~ 406 (568)
T 3p9d_H 356 ETVKTMEIGGDRVTVFKQEQG-----------------------------EISRTSTIILRGATQNNLDDIERAIDDGVA 406 (568)
T ss_dssp SCCCCCEETTEECBCCCCCSS-----------------------------SCCSSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecCceEEEEecCCC-----------------------------CCCCeEEEEECCCcHHHHHHHHHHHHHHHH
Confidence 99864 5688999999862 134679999999999999999999999999
Q ss_pred HHHHHHH--c-CCcCCchHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc-----
Q 012313 351 AVQAAKE--E-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----- 420 (466)
Q Consensus 351 a~r~a~~--~-gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~----- 420 (466)
++|++++ + ++|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++.
T Consensus 407 vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~ 486 (568)
T 3p9d_H 407 AVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTE 486 (568)
T ss_dssp HHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCSTHHHHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHHHHCCCCSS
T ss_pred HHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhc
Confidence 9999999 5 59999999999999999999875 899999999999999999999999999999999 999873
Q ss_pred ------CCCCeeEeCCCCc---cccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 012313 421 ------DSSDLGYNPARGN---YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 466 (466)
Q Consensus 421 ------~~~~~G~d~~~~~---~~d~~~~gI~dp~~vk~~al~~A~~~A~~iL~i 466 (466)
+++++|||+.+|+ +.||+++|||||+.||+++|++|+|+|++||||
T Consensus 487 ~~~~~~~~~~~G~d~~~g~~~~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 541 (568)
T 3p9d_H 487 PGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSI 541 (568)
T ss_dssp CCCCCCTTSSSCCCHHHHTCCCCHHHHHHHHHHHHHHHHHHHHCCEECBCCC---
T ss_pred ccccccCCCceeEcccCCCcccccChHHccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 3468999999997 999999999999999999999999999999987
No 27
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.1e-47 Score=346.87 Aligned_cols=189 Identities=38% Similarity=0.559 Sum_probs=184.8
Q ss_pred eEeEeeEEEeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhh
Q 012313 140 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDF 219 (466)
Q Consensus 140 ~~lv~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~ 219 (466)
+++++||.||+||+||||++++++|.+++++|+||++|.+|++.++++|+||++.++|+||+|++++++++||++|+.|+
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKIs~i~~ilP~LE~~~~~~kpLlIIAedvegeaLatLvvNk 81 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNA 81 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHH
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEecccccchhhhhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHH
Q 012313 220 TCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERC 299 (466)
Q Consensus 220 ~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~ 299 (466)
++|.++|+|||.|||||.||..|+|||.+|||+++++++|+++++++.++||+|++|.+++++|+++.|.++++.|+.|+
T Consensus 82 lrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtkd~T~iv~G~g~~~~I~~Rv 161 (194)
T 3m6c_A 82 IRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRA 161 (194)
T ss_dssp HHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHH
T ss_pred ccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccEEEEcCCceEEecCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcch----HHHHHHHhhhcCCeEEE
Q 012313 300 EQLRSTIKLSTS----DKLKDRLAKLSGGYAVL 328 (466)
Q Consensus 300 ~~l~~~l~~~~s----~~l~~Rl~~l~g~~~tI 328 (466)
++|+++++.++| |+|+||||||+|++|+|
T Consensus 162 ~qIr~~ie~t~s~ydkEKLqERlAkLsGGVAVI 194 (194)
T 3m6c_A 162 KHLRAEIDKSDSDWDREKLGERLAKLAGGVAVI 194 (194)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHBCCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCcEEC
Confidence 999999999888 99999999999998865
No 28
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=100.00 E-value=6.4e-46 Score=337.72 Aligned_cols=185 Identities=35% Similarity=0.527 Sum_probs=180.6
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccC
Q 012313 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCT 222 (466)
Q Consensus 143 v~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~ 222 (466)
.+||.||+||+||||++++++|.+++++|+||++|.+|+++++++|+||.+.++|+||+|++++|+++||++|+.|+++|
T Consensus 12 ~~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKIs~i~~ilP~LE~v~~~~rpLlIIAEDvegEALatLvvNklrg 91 (201)
T 3osx_A 12 SEGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLVIIAEDVEGEALATLVVNNMRG 91 (201)
T ss_dssp CCCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEECCHHHHHHHHHHHHTSSCCEEEEEEEECHHHHHHHHHHHHHT
T ss_pred ccccEecCccCChheeecccCCEEEecCCeEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEeccccchhhhHHHHhhccc
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHH
Q 012313 223 TEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQL 302 (466)
Q Consensus 223 ~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~r~~~l 302 (466)
.++|||||.|||||.||..|+|||.+|||++++++.|+++++++.++||+|++|++++++|+++.|.++++.|+.|+++|
T Consensus 92 ~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~vtkd~TtIv~G~G~~~~I~~Rv~qI 171 (201)
T 3osx_A 92 IVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQI 171 (201)
T ss_dssp SCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEEcCCceEEecCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcch----HHHHHHHhhhcCCeEE
Q 012313 303 RSTIKLSTS----DKLKDRLAKLSGGYAV 327 (466)
Q Consensus 303 ~~~l~~~~s----~~l~~Rl~~l~g~~~t 327 (466)
++++++++| |+|+||||||+|++|+
T Consensus 172 r~qie~t~S~ydkEKLqERLAKLsGGVAV 200 (201)
T 3osx_A 172 RQQIEESTSDYDREKLQERVAKLAGGVKL 200 (201)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCcC
Confidence 999999888 9999999999999874
No 29
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=100.00 E-value=5.2e-37 Score=266.48 Aligned_cols=144 Identities=34% Similarity=0.535 Sum_probs=141.7
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhhhccCCC
Q 012313 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTE 224 (466)
Q Consensus 145 G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~ 224 (466)
||.||+||+||||++++++|.+++++|+||++|.+|++.++++|+||++.++|+||+|++++++++||++|+.|+++|.+
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKIs~i~~llP~LE~v~~~~~pLlIIAedvegeaLatLvvNklrg~l 80 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTL 80 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSC
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEecccccCHHHHHHHHHHHHHHCCCEEEEecccchhhhhhhhhhhhcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcC
Q 012313 225 KVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGG 288 (466)
Q Consensus 225 ~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~ 288 (466)
+++|||.|||||+||..|+|||.+|||++++++.|+++++++.++||+|++|++++++|+++.|
T Consensus 81 ~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtkd~TtIv~G 144 (145)
T 1srv_A 81 SVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGG 144 (145)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred eEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999875
No 30
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=99.87 E-value=4.6e-22 Score=182.97 Aligned_cols=144 Identities=10% Similarity=0.163 Sum_probs=119.5
Q ss_pred eeEeEeeEEEeccccCCccccccccceeeecCceEEEeccccC-------------CHH-----------HHHHHHHHHH
Q 012313 139 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS-------------NSN-----------VIRQASLPCM 194 (466)
Q Consensus 139 ~~~lv~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~-------------~~~-----------~i~~~l~~i~ 194 (466)
+|++++|++|++++.+|.|+ ..++||+|++++.+++ +++ .+..++++|.
T Consensus 3 dS~lv~Gvvl~k~~~~~~mp-------k~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~ 75 (178)
T 1gml_A 3 DSCVLRGVMINKDVTHPRMR-------RYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDII 75 (178)
T ss_dssp CCSEEEEEEESCCCSSTTSC-------CEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEeccccCCCCC-------cccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999888663 3688999999998643 222 2456788899
Q ss_pred HcCCCEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee-e
Q 012313 195 MQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-C 273 (466)
Q Consensus 195 ~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~-~ 273 (466)
+.|+++|+++++|++.++++|..+ +|++++++ ++++|++||++|||+++++ ++++++++||+ |
T Consensus 76 ~~g~nVVl~~k~I~d~a~~~l~k~------gI~~vr~v-----~~~dleria~atGa~iv~~-----~~~l~~~~LG~~~ 139 (178)
T 1gml_A 76 QLKPDVVITEKGISDLAQHYLMRA------NVTAIRRV-----RKTDNNRIARACGARIVSR-----PEELREDDVGTGA 139 (178)
T ss_dssp TTCCSEEEESSCBCHHHHHHHHHT------TCEEECCC-----CHHHHHHHHHHHCCCEESC-----GGGCCGGGSBCCE
T ss_pred hcCCcEEEECCcccHHHHHHHHHC------CCEEEecC-----CHHHHHHHHHHhCCeEeCC-----hhhCChhhhCCcc
Confidence 999999999999999999999975 49999998 5777999999999999997 89999999999 9
Q ss_pred eEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEEccCchh
Q 012313 274 KRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKA 336 (466)
Q Consensus 274 ~~v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~vrG~t~~ 336 (466)
+.|+ ++++++++|+||++++ .|||++||+|.+
T Consensus 140 ~~v~~~~ig~~~~~~~~gc~~~~-------------------------------~~TIllRG~~~~ 174 (178)
T 1gml_A 140 GLLEIKKIGDEYFTFITDCKDPK-------------------------------ACTILLRGASHH 174 (178)
T ss_dssp EEEEEEEETTEEEEEEEEESSTT-------------------------------SCEEEEEC----
T ss_pred cEEEEEEECCeEEEEEECCCCCC-------------------------------EEEEEEECCCcc
Confidence 9987 4678899999997764 589999999875
No 31
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=99.78 E-value=1.2e-18 Score=157.08 Aligned_cols=127 Identities=17% Similarity=0.264 Sum_probs=108.0
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccC-------------CHHH-----------HHHHHHHHHHcCC
Q 012313 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS-------------NSNV-----------IRQASLPCMMQGQ 198 (466)
Q Consensus 143 v~G~~~~~~~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~-------------~~~~-----------i~~~l~~i~~~~~ 198 (466)
++|++|++++.+|.|+ ..++||+|++++.+++ ++++ +...+++|.+.|+
T Consensus 1 i~Gvv~~k~~~~~~mp-------k~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~ 73 (159)
T 1ass_A 1 MSGIVIDKEKVHSKMP-------DVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGA 73 (159)
T ss_dssp CCCEEESCCCSCTTSC-------SEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEecccCCCCCC-------cCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCC
Confidence 4799999999988664 3788999999998643 3332 4567888999999
Q ss_pred CEEEEecccchhhhhhHHhhhccCCCceEEEEecCcccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE-
Q 012313 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI- 277 (466)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tG~~i~~~~~~~~~~~~~~~~lG~~~~v~- 277 (466)
++|+++++|++.++++|..+ +|++++++ ++++|++||++|||+++++ ++++++++||+|+.|+
T Consensus 74 nVVl~~k~I~d~a~~~l~k~------gI~~v~~v-----~~~dleria~atGa~iv~~-----~~~l~~~~LG~~~~v~e 137 (159)
T 1ass_A 74 NVVLCQKGIDDVAQHYLAKE------GIYAVRRV-----KKSDMEKLAKATGAKIVTD-----LDDLTPSVLGEAETVEE 137 (159)
T ss_dssp SEEEESSCBCHHHHHHHHHT------TCEEECSC-----CHHHHHHHHHHHTCCCBSS-----TTSCCTTSCEEEEEEEE
T ss_pred eEEEECCccCHHHHHHHHHC------CCEEEccC-----CHHHHHHHHHHhCCeeeCc-----cccCCcccCccceEEEE
Confidence 99999999999999999875 49999998 5777999999999999997 8999999999999996
Q ss_pred --EecceEEEEcCCCCh
Q 012313 278 --ATMDNVVIIGGSGEL 292 (466)
Q Consensus 278 --i~~~~~~~~~~~~~~ 292 (466)
++++++++|+||++.
T Consensus 138 ~~ig~~~~~~~~g~~~~ 154 (159)
T 1ass_A 138 RKIGDDRMTFVMGCKNH 154 (159)
T ss_dssp EEETTEEEEEEESCC--
T ss_pred EEECCeEEEEEECCCCc
Confidence 468899999999864
No 32
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.79 E-value=2.1e+02 Score=21.86 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccchhhhhhHHhh-hccCCCceEEEEec
Q 012313 181 SNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATD-FTCTTEKVCIIKAA 232 (466)
Q Consensus 181 ~~~~~i~~~l~~i~~~~~~lvIi~~~i~~~al~~l~~n-~~~~~~~i~avk~~ 232 (466)
.+.+++..+++..+..|+|||++-.+-+..-...+-.. +..| ...-++|..
T Consensus 35 tssqdirdiiksmkdngkplvvfvngasqndvnefqneakkeg-vsydvlkst 86 (112)
T 2lnd_A 35 TSSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEG-VSYDVLKST 86 (112)
T ss_dssp CSHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred cchhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcC-cchhhhccC
Confidence 35678899999999999999987666655444433322 2233 334455544
Done!