BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012314
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 271 bits (693), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 157/475 (33%), Positives = 253/475 (53%), Gaps = 30/475 (6%)
Query: 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLG-EQIH 61
+P V+++P P QGH+ PL + ++ L GF +TFVNT+YNHKR+++S K + G +
Sbjct: 8 KPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFN 67
Query: 62 LVSIPDGMEPWEDRNDLGKLIEK-CLQVMPGKLE---ELIEEIN-SREDEKIDCFIADGN 116
SIPDG+ P E D+ + + C V L+ EL+ +N S + C ++D
Sbjct: 68 FESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCC 127
Query: 117 IGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGII----DSHGTPMSMQM-FRI 171
+ ++++ A++ + +++ SSA S+ V ++ GII +S+ T ++
Sbjct: 128 MSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDW 187
Query: 172 APKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAF---- 227
P + +D I I + + N+ ELES+
Sbjct: 188 IPGLKNFRLKDIV-DFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALS 246
Query: 228 TTFPELLPIGPLLA-------SNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFT 280
+T P + PIGPL + ++L + W ED+ CL WL+ ++P SVVYV+FGS T
Sbjct: 247 STIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTT 306
Query: 281 ILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRV 340
++ Q E A GL CK+ FLW++RPD+ + + F +A RG + SW PQ +V
Sbjct: 307 VMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKV 366
Query: 341 LNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 400
LNHPSI FL+HCGWNST E + G+P LCWP+F DQ + R+IC+ W++G++ D +
Sbjct: 367 LNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTN--- 423
Query: 401 IITREEIKNKVDQVLG---NQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 452
+ REE+ +++V+ + K +A+ELK+KA + R GG SY ++ V
Sbjct: 424 -VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDV 477
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 142/488 (29%), Positives = 222/488 (45%), Gaps = 67/488 (13%)
Query: 4 PRVLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHL 62
P V ++P+P GH+IPL+EF++ L HG VTFV +G ++ L
Sbjct: 7 PHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAG----------EGPPSKAQRTVL 56
Query: 63 VSIPDGME----PWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118
S+P + P D DL + ++ + N + D F+ G +
Sbjct: 57 DSLPSSISSVFLPPVDLTDLSSSTR-----IESRISLTVTRSNPELRKVFDSFVEGGRLP 111
Query: 119 WSM----------EIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGTPMSMQM 168
++ ++A + +V +F+P++A ++ +PKL D + ++ +
Sbjct: 112 TALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKL--DETVSCEFRELTEPL 169
Query: 169 FRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFT 228
+ P + +D F D + L NT+ N+ +ELE A
Sbjct: 170 --MLPGCVPVAGKD-FLDPAQDRKDDA--YKWLLHNTKRYKEAEGILVNTFFELEPNAIK 224
Query: 229 TF-------PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTI 281
P + P+GPL+ +G E+S CLKWLD Q SV+YVSFGS
Sbjct: 225 ALQEPGLDKPPVYPVGPLV---NIGKQEAK-QTEESECLKWLDNQPLGSVLYVSFGSGGT 280
Query: 282 LDQVQFQELALGLELCKRPFLWVVRPDITTDANDRY-------------PEGFQERVAAR 328
L Q ELALGL ++ FLWV+R + AN Y P GF ER R
Sbjct: 281 LTCEQLNELALGLADSEQRFLWVIR-SPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKR 339
Query: 329 GQMIS-WAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDF 387
G +I WAPQ +VL HPS FL+HCGWNST+E V +GIP + WP + +Q +N + +
Sbjct: 340 GFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSED 399
Query: 388 WKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKA---RALELKEKAMSSVREGGSSYKT 444
+ L+ + G++ REE+ V ++ ++ K + ELKE A +++ G+S K
Sbjct: 400 IRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKA 459
Query: 445 FQNF-LQW 451
L+W
Sbjct: 460 LSLVALKW 467
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 121/462 (26%), Positives = 213/462 (46%), Gaps = 34/462 (7%)
Query: 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVS 64
V V+ P H PLL + +A +VTF + +L I +
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFL-PNIKYYN 73
Query: 65 IPDGM-EPWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEI 123
+ DG+ + + + + I ++ M + +I+E + + I C + D + ++
Sbjct: 74 VHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADL 133
Query: 124 AKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGTP--MSMQMFRIAPKMPEMNSR 181
A++M+ + W + S+ + + D I + G+ ++ + P PE+ +
Sbjct: 134 AEEMHAKWVPLWTAGPHSL-----LTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELKAS 188
Query: 182 DCFWAHIGDWTS------QKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLP 235
D I D K+ +L N +A+N F +E+E + F LL
Sbjct: 189 DLPEGVIKDIDVPFATMLHKMGLELPRANA---VAIN-SFATIHPLIENELNSKFKLLLN 244
Query: 236 IGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLE 295
+GP + T ++ CL+WLDQ + SSVVY+SFGS + LA LE
Sbjct: 245 VGPFNLT-----TPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLE 299
Query: 296 LCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGW 355
C PF+W R D ++ P+GF ER +G++++WAPQ+ +L H S+ FL+H GW
Sbjct: 300 ECGFPFIWSFR----GDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGW 355
Query: 356 NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 415
NS +E + G+P + P+FGDQ LN ++G+ D G++T+E IK ++ +
Sbjct: 356 NSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDN---GVLTKESIKKALELTM 412
Query: 416 GNQD---FKARALELKEKAMSSVREGGSSYKTFQNFLQWVKT 454
++ + + ++LKE A +V + G+S F +Q V +
Sbjct: 413 SSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVTS 454
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 172/357 (48%), Gaps = 31/357 (8%)
Query: 108 IDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDD-GIIDSHGTPMSM 166
+ C +AD I ++ ++A +M V FW + S++ I ++ + G+ G
Sbjct: 113 VSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGR--ED 170
Query: 167 QMFRIAPKMPEMNSRDCFWAHI-GDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELE-- 223
++ P M ++ RD + G+ S +F +L R + + F NS EL+
Sbjct: 171 ELLNFIPGMSKVRFRDLQEGIVFGNLNS--LFSRMLHRMGQVLPKATAVFINSFEELDDS 228
Query: 224 -----SEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGS 278
T+ + P + + NT G CL+WL +++P+SVVY+SFG+
Sbjct: 229 LTNDLKSKLKTYLNIGPFNLITPPPVVPNTTG--------CLQWLKERKPTSVVYISFGT 280
Query: 279 FTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQL 338
T + L+ LE + PF+W +R A PEGF E+ G ++ WAPQ
Sbjct: 281 VTTPPPAEVVALSEALEASRVPFIWSLR----DKARVHLPEGFLEKTRGYGMVVPWAPQA 336
Query: 339 RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 398
VL H ++ F++HCGWNS E V+ G+P +C P+FGDQ LN R + D ++G+ R E
Sbjct: 337 EVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGV---RIE 393
Query: 399 GGIITREEIKNKVDQVLGNQ---DFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 452
GG+ T+ + + DQ+L + + L+E A +V GSS + F + V
Sbjct: 394 GGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLV 450
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 117/456 (25%), Positives = 206/456 (45%), Gaps = 35/456 (7%)
Query: 5 RVLVMPAPAQGHVIPLLEFSQCLAKHG-------FRVTFVNTDYNHKRVVESLQGKNYLG 57
++ +PAP GH+ LEF++ L H F + F + + L +
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQ---- 66
Query: 58 EQIHLVSIPDGMEPWEDRNDLGKLIE-KCLQVMPGKLEELIEEINSREDEKIDCFIADGN 116
QI L+ +P+ P +L K E L + + + I + K+ + D
Sbjct: 67 PQIQLIDLPEVEPP---PQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFF 123
Query: 117 IGWSMEIAKKMNVRGAVFWPSSAASVALVFRIP-KLIDDGIIDSHGTPMSMQMFRIAPKM 175
+++ + + +F S+ ++L+ + + I++ DS + + I+ ++
Sbjct: 124 CVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQV 183
Query: 176 PEMNSRDCFWAHIGDWTSQKIFFDLLER--NTRAMIAVNFH-FCNSTYELESEAFTTFPE 232
P D + G + + ++ L ER +T+ +I F S+ + + P
Sbjct: 184 PSNVLPDACFNKDGGYIA---YYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPP 240
Query: 233 LLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTI-LDQVQFQELA 291
+ +GPLL N + LKWLD+Q SVV++ FGS + Q +E+A
Sbjct: 241 IYAVGPLLDLKGQPNPK-LDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIA 299
Query: 292 LGLELCKRPFLWVVRPDITTDANDRYPEGFQE--RVAARGQMISWAPQLRVLNHPSIACF 349
LGL+ FLW + +PEGF E + +G + WAPQ+ VL H +I F
Sbjct: 300 LGLKHSGVRFLWS-----NSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGF 354
Query: 350 LSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKV--GLKFDRDEGG-IITREE 406
+SHCGWNS +E + G+P L WP + +Q LN + W V GL+ D +G ++ EE
Sbjct: 355 VSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEE 414
Query: 407 IKNKVDQVLGNQDFKARAL-ELKEKAMSSVREGGSS 441
I+ + ++ + + E+KE + ++V +GGSS
Sbjct: 415 IEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSS 450
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/456 (25%), Positives = 207/456 (45%), Gaps = 35/456 (7%)
Query: 5 RVLVMPAPAQGHVIPLLEFSQCLAKHG-------FRVTFVNTDYNHKRVVESLQGKNYLG 57
++ +PAP GH+ LEF++ L H F + F + + L +
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQ---- 66
Query: 58 EQIHLVSIPDGMEPWEDRNDLGKLIE-KCLQVMPGKLEELIEEINSREDEKIDCFIADGN 116
QI L+ +P+ P ++ L K E L + + + I + K+ + D
Sbjct: 67 PQIQLIDLPEVEPPPQE---LLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFF 123
Query: 117 IGWSMEIAKKMNVRGAVFWPSSAASVALVFRIP-KLIDDGIIDSHGTPMSMQMFRIAPKM 175
+++ + + +F S+ ++L+ + + I++ DS + + I+ ++
Sbjct: 124 CVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQV 183
Query: 176 PEMNSRDCFWAHIGDWTSQKIFFDLLER--NTRAMIAVNFH-FCNSTYELESEAFTTFPE 232
P D + G + + ++ L ER +T+ +I F S+ + + P
Sbjct: 184 PSNVLPDACFNKDGGYIA---YYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPP 240
Query: 233 LLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTI-LDQVQFQELA 291
+ +GPLL N + LKWLD+Q SVV++ FGS + Q +E+A
Sbjct: 241 IYAVGPLLDLKGQPNPK-LDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIA 299
Query: 292 LGLELCKRPFLWVVRPDITTDANDRYPEGFQE--RVAARGQMISWAPQLRVLNHPSIACF 349
LGL+ FLW + +PEGF E + +G + WAPQ+ VL H +I F
Sbjct: 300 LGLKHSGVRFLWS-----NSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGF 354
Query: 350 LSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKV--GLKFDRDEGG-IITREE 406
+SHCGWNS +E + G+P L WP + +Q LN + W V GL+ D +G ++ EE
Sbjct: 355 VSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEE 414
Query: 407 IKNKVDQVLGNQDFKARAL-ELKEKAMSSVREGGSS 441
I+ + ++ + + E+KE + ++V +GGSS
Sbjct: 415 IEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSS 450
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 334 WAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLK 393
W PQL +L S F++H G STME +SN +P + P +Q +N I + +G
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL-GLGRH 368
Query: 394 FDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEK 430
RD+ +T E+++ V V + R ++++
Sbjct: 369 IPRDQ---VTAEKLREAVLAVASDPGVAERLAAVRQE 402
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 330 QMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQ 377
++ W PQ +L HP F++H G N E + +GIP + P F DQ
Sbjct: 71 RLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 325 VAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQF 378
V A ++ SW PQ +L H + + H G +T+ + G+P L +P+ GD F
Sbjct: 290 VPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 334 WAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLN 380
W PQL +L + F++H G + EG++ P + P DQF N
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGN 334
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 241 ASNRLGNTAGYFWCEDSNCLKWL 263
+S + +GY WC+ NC+KW+
Sbjct: 214 SSELMQKVSGYQWCDIENCVKWM 236
>pdb|1TRF|A Chain A, Solution Structure Of The Tr1c Fragment Of Skeletal Muscle
Troponin-C
Length = 76
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 378 FLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVRE 437
FL+E I +F FD D GG I+ +E+ V ++LG K E + + V E
Sbjct: 2 FLSEEMIAEFKAAFDMFDADGGGDISTKEL-GTVMRMLGQNPTK----EELDAIIEEVDE 56
Query: 438 GGSSYKTFQNFL 449
GS F+ FL
Sbjct: 57 DGSGTIDFEEFL 68
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
Length = 440
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 409 NKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNALAHNSPVTG 465
NKVD + N+D+ ++ EK E G +K ++++L + +L H+ T
Sbjct: 88 NKVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYL--LTPKSLFHHRNFTS 142
>pdb|1AVS|A Chain A, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1AVS|B Chain B, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1BLQ|A Chain A, Structure And Interaction Site Of The Regulatory Domain Of
Troponin-C When Complexed With The 96-148 Region Of
Troponin-I, Nmr, 29 Structures
pdb|1SKT|A Chain A, Solution Structure Of Apo N-Domain Of Troponin C, Nmr, 40
Structures
pdb|1TNP|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1TNQ|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1ZAC|A Chain A, N-Domain Of Troponin C From Chicken Skeletal Muscle, Nmr,
Minimized Average Structure
Length = 90
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 378 FLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVRE 437
FL+E I +F FD D GG I+ +E+ V ++LG K E + + V E
Sbjct: 13 FLSEEMIAEFKAAFDMFDADGGGDISTKEL-GTVMRMLGQNPTK----EELDAIIEEVDE 67
Query: 438 GGSSYKTFQNFL 449
GS F+ FL
Sbjct: 68 DGSGTIDFEEFL 79
>pdb|1NPQ|A Chain A, Structure Of A Rhodamine-Labeled N-Domain Troponin C
Mutant (Ca2+ Saturated) In Complex With Skeletal
Troponin I 115- 131
Length = 90
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 378 FLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVRE 437
FL+E I +F FD D GG I+ +E+ V ++LG K EL + + V E
Sbjct: 13 FLSEEMIAEFKAAFDMFDADGGGDISTKEL-GTVMRMLGQNPTKC---EL-DAIICEVDE 67
Query: 438 GGSSYKTFQNFL 449
GS F+ FL
Sbjct: 68 DGSGTIDFEEFL 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,654,208
Number of Sequences: 62578
Number of extensions: 631823
Number of successful extensions: 1609
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1572
Number of HSP's gapped (non-prelim): 24
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)