Query 012314
Match_columns 466
No_of_seqs 124 out of 1263
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 01:19:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 100.0 1E-66 2.2E-71 506.3 44.7 432 4-453 7-448 (448)
2 PLN02152 indole-3-acetate beta 100.0 1.7E-65 3.8E-70 494.2 44.4 432 1-452 1-454 (455)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.4E-65 3.1E-70 496.5 42.9 432 3-454 7-450 (451)
4 PLN02207 UDP-glycosyltransfera 100.0 2.9E-65 6.4E-70 493.6 44.2 444 1-455 1-466 (468)
5 PLN02555 limonoid glucosyltran 100.0 5.8E-65 1.3E-69 493.8 44.4 446 3-455 7-470 (480)
6 PLN02173 UDP-glucosyl transfer 100.0 1.4E-64 3E-69 487.1 43.4 423 4-453 6-447 (449)
7 PLN02210 UDP-glucosyl transfer 100.0 1E-63 2.2E-68 485.7 43.0 429 3-453 8-454 (456)
8 PLN02554 UDP-glycosyltransfera 100.0 1E-63 2.3E-68 490.8 43.0 441 3-456 2-480 (481)
9 PLN00164 glucosyltransferase; 100.0 3.5E-63 7.5E-68 485.0 43.0 440 1-456 1-475 (480)
10 PLN02863 UDP-glucoronosyl/UDP- 100.0 6.8E-63 1.5E-67 481.2 44.6 444 2-456 8-473 (477)
11 PLN02992 coniferyl-alcohol glu 100.0 7.3E-63 1.6E-67 477.7 42.7 428 3-455 5-470 (481)
12 PLN03004 UDP-glycosyltransfera 100.0 4.1E-63 8.8E-68 477.3 40.6 431 1-443 1-450 (451)
13 PLN03015 UDP-glucosyl transfer 100.0 3E-62 6.5E-67 470.5 42.7 433 1-452 1-466 (470)
14 PLN02167 UDP-glycosyltransfera 100.0 2.6E-62 5.6E-67 480.2 42.5 445 1-455 1-473 (475)
15 PLN02448 UDP-glycosyltransfera 100.0 5.7E-62 1.2E-66 476.9 43.3 430 3-454 10-457 (459)
16 PLN03007 UDP-glucosyltransfera 100.0 2.7E-61 5.9E-66 474.4 44.2 438 3-454 5-480 (482)
17 PLN02670 transferase, transfer 100.0 3.6E-61 7.8E-66 465.6 41.6 434 3-456 6-467 (472)
18 PLN02764 glycosyltransferase f 100.0 9.5E-61 2.1E-65 458.8 42.3 421 3-459 5-450 (453)
19 PLN02534 UDP-glycosyltransfera 100.0 1.5E-60 3.3E-65 463.5 42.9 440 1-455 5-487 (491)
20 PLN02208 glycosyltransferase f 100.0 1.3E-60 2.8E-65 460.9 41.1 413 1-454 1-439 (442)
21 PLN00414 glycosyltransferase f 100.0 4.7E-59 1E-63 450.5 40.4 414 3-457 4-443 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 6.3E-54 1.4E-58 422.6 27.9 418 4-456 21-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.9E-55 4E-60 442.1 -2.7 413 5-457 2-446 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 7.1E-44 1.5E-48 347.1 33.9 362 10-434 2-376 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.4E-43 3.1E-48 346.7 25.9 364 4-433 1-387 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 3.7E-43 8E-48 353.2 19.3 429 3-455 5-456 (496)
27 COG1819 Glycosyl transferases, 100.0 1.1E-40 2.4E-45 320.1 24.0 392 3-455 1-401 (406)
28 PF13528 Glyco_trans_1_3: Glyc 99.9 1E-25 2.2E-30 213.5 25.4 305 4-414 1-317 (318)
29 PRK12446 undecaprenyldiphospho 99.9 6.4E-25 1.4E-29 208.6 27.2 316 5-424 3-333 (352)
30 TIGR00661 MJ1255 conserved hyp 99.9 3.5E-23 7.7E-28 195.5 22.9 309 5-421 1-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 4.9E-21 1.1E-25 179.6 29.3 323 4-433 1-337 (357)
32 PRK00726 murG undecaprenyldiph 99.9 5.9E-20 1.3E-24 177.0 27.0 326 4-431 2-338 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 7.3E-19 1.6E-23 169.1 25.3 321 5-428 1-335 (350)
34 COG4671 Predicted glycosyl tra 99.8 6.2E-19 1.3E-23 157.0 21.7 325 3-418 9-366 (400)
35 TIGR00215 lpxB lipid-A-disacch 99.8 1.5E-17 3.3E-22 160.4 20.9 351 4-449 6-383 (385)
36 TIGR01133 murG undecaprenyldip 99.8 2.2E-16 4.7E-21 151.8 25.3 315 5-426 2-330 (348)
37 PRK13609 diacylglycerol glucos 99.7 1.7E-15 3.8E-20 147.1 28.3 141 268-426 201-347 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 9.3E-16 2E-20 141.2 21.1 104 269-383 170-278 (279)
39 PRK13608 diacylglycerol glucos 99.7 5.5E-14 1.2E-18 136.6 26.1 164 268-453 201-370 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.6 4.8E-14 1E-18 137.2 21.2 343 4-448 2-371 (380)
41 PLN02605 monogalactosyldiacylg 99.6 1.1E-12 2.4E-17 127.3 23.9 141 267-426 204-357 (382)
42 TIGR03492 conserved hypothetic 99.5 6.2E-12 1.3E-16 121.6 25.6 329 12-425 5-372 (396)
43 PF04101 Glyco_tran_28_C: Glyc 99.5 7.6E-16 1.6E-20 131.1 -2.7 141 271-422 1-149 (167)
44 cd03814 GT1_like_2 This family 99.5 3.1E-11 6.7E-16 116.3 28.6 344 5-451 1-362 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.5 1E-10 2.2E-15 116.7 32.4 138 271-430 264-413 (465)
46 COG3980 spsG Spore coat polysa 99.4 1.6E-11 3.5E-16 106.8 17.4 148 269-432 158-308 (318)
47 cd03818 GT1_ExpC_like This fam 99.4 1E-09 2.3E-14 107.3 30.7 88 327-424 281-373 (396)
48 PF03033 Glyco_transf_28: Glyc 99.4 2.1E-12 4.5E-17 106.4 9.4 125 6-140 1-133 (139)
49 cd03823 GT1_ExpE7_like This fa 99.4 7.9E-10 1.7E-14 106.2 27.8 138 269-426 190-338 (359)
50 cd03816 GT1_ALG1_like This fam 99.4 8.6E-10 1.9E-14 108.2 27.8 332 2-422 2-389 (415)
51 cd03794 GT1_wbuB_like This fam 99.3 3.9E-10 8.4E-15 109.5 24.7 344 5-427 1-375 (394)
52 cd04962 GT1_like_5 This family 99.3 1.5E-09 3.3E-14 105.2 28.1 112 327-453 253-369 (371)
53 cd03801 GT1_YqgM_like This fam 99.3 3.1E-09 6.7E-14 102.1 29.4 314 14-426 14-350 (374)
54 PRK05749 3-deoxy-D-manno-octul 99.3 2.8E-09 6.2E-14 105.2 29.2 84 339-432 315-403 (425)
55 cd03808 GT1_cap1E_like This fa 99.3 6.3E-09 1.4E-13 99.6 30.5 321 5-426 1-338 (359)
56 cd03800 GT1_Sucrose_synthase T 99.3 2.2E-09 4.7E-14 105.1 27.6 333 14-424 21-375 (398)
57 TIGR00236 wecB UDP-N-acetylglu 99.3 4.5E-10 9.8E-15 108.5 20.6 137 269-426 197-343 (365)
58 cd03817 GT1_UGDG_like This fam 99.3 5.5E-09 1.2E-13 100.8 27.3 83 326-421 258-347 (374)
59 cd03820 GT1_amsD_like This fam 99.2 1.2E-08 2.5E-13 97.3 28.2 94 327-432 235-334 (348)
60 cd03825 GT1_wcfI_like This fam 99.2 1.1E-08 2.3E-13 98.8 27.5 112 326-452 243-362 (365)
61 cd03805 GT1_ALG2_like This fam 99.2 1.9E-08 4.1E-13 98.3 29.0 86 326-424 279-371 (392)
62 cd03798 GT1_wlbH_like This fam 99.2 2.3E-08 5E-13 96.3 29.0 314 13-420 13-347 (377)
63 PRK10307 putative glycosyl tra 99.2 3.4E-08 7.3E-13 97.2 30.1 163 270-455 229-408 (412)
64 TIGR03449 mycothiol_MshA UDP-N 99.2 5E-08 1.1E-12 95.8 30.2 112 327-454 283-401 (405)
65 cd03795 GT1_like_4 This family 99.2 3.6E-08 7.8E-13 94.9 28.1 137 270-426 191-341 (357)
66 cd03786 GT1_UDP-GlcNAc_2-Epime 99.2 2.9E-09 6.3E-14 102.9 19.5 136 269-424 198-344 (363)
67 cd03821 GT1_Bme6_like This fam 99.1 2.9E-07 6.4E-12 88.7 31.1 89 326-428 261-356 (375)
68 cd05844 GT1_like_7 Glycosyltra 99.1 6.5E-08 1.4E-12 93.6 26.0 87 326-424 244-343 (367)
69 TIGR02468 sucrsPsyn_pln sucros 99.1 2.5E-07 5.4E-12 97.2 29.6 389 15-455 196-671 (1050)
70 TIGR02472 sucr_P_syn_N sucrose 99.0 5.2E-07 1.1E-11 89.4 30.1 88 326-423 316-412 (439)
71 cd03796 GT1_PIG-A_like This fa 99.0 3.5E-07 7.5E-12 89.6 28.3 114 326-456 249-369 (398)
72 cd03811 GT1_WabH_like This fam 99.0 1.3E-07 2.8E-12 90.2 23.8 319 5-426 1-341 (353)
73 PRK14089 ipid-A-disaccharide s 99.0 3.8E-08 8.3E-13 92.6 19.1 149 269-435 167-332 (347)
74 cd03819 GT1_WavL_like This fam 99.0 8.3E-07 1.8E-11 85.4 28.9 88 326-423 245-337 (355)
75 cd03802 GT1_AviGT4_like This f 99.0 1.6E-07 3.4E-12 89.6 23.6 130 271-418 172-309 (335)
76 cd03799 GT1_amsK_like This is 99.0 5.2E-07 1.1E-11 86.7 27.1 86 326-423 235-333 (355)
77 PRK09922 UDP-D-galactose:(gluc 99.0 2.6E-07 5.7E-12 89.1 24.0 132 271-420 181-327 (359)
78 cd03812 GT1_CapH_like This fam 99.0 6.8E-07 1.5E-11 86.1 26.8 88 326-426 248-340 (358)
79 PLN02275 transferase, transfer 99.0 5.5E-07 1.2E-11 87.2 26.0 75 327-415 286-371 (371)
80 PRK01021 lpxB lipid-A-disaccha 99.0 4.2E-07 9.1E-12 89.8 25.0 219 210-447 361-601 (608)
81 cd03807 GT1_WbnK_like This fam 99.0 3.5E-06 7.6E-11 80.8 31.5 82 327-422 251-337 (365)
82 cd03822 GT1_ecORF704_like This 98.9 7.7E-07 1.7E-11 85.7 25.7 87 326-425 246-342 (366)
83 cd04955 GT1_like_6 This family 98.9 8.2E-07 1.8E-11 85.6 25.9 153 273-450 196-360 (363)
84 TIGR02470 sucr_synth sucrose s 98.9 5.1E-06 1.1E-10 85.6 32.1 90 327-426 619-722 (784)
85 PF04007 DUF354: Protein of un 98.9 1.9E-06 4.2E-11 80.4 26.5 299 5-415 2-308 (335)
86 PLN02846 digalactosyldiacylgly 98.9 1.1E-06 2.3E-11 85.8 25.4 122 272-418 230-364 (462)
87 COG1519 KdtA 3-deoxy-D-manno-o 98.9 8E-06 1.7E-10 76.6 29.4 315 12-433 57-402 (419)
88 cd04951 GT1_WbdM_like This fam 98.9 1.5E-06 3.2E-11 83.7 25.6 140 269-432 187-342 (360)
89 PF02684 LpxB: Lipid-A-disacch 98.9 5.3E-07 1.2E-11 85.4 21.4 340 6-442 1-365 (373)
90 cd03809 GT1_mtfB_like This fam 98.9 1.1E-06 2.4E-11 84.7 24.2 92 325-430 251-349 (365)
91 cd03792 GT1_Trehalose_phosphor 98.9 1.6E-06 3.4E-11 84.2 25.0 110 327-453 252-370 (372)
92 TIGR02149 glgA_Coryne glycogen 98.8 4.5E-06 9.7E-11 81.4 27.9 167 271-453 202-385 (388)
93 TIGR03088 stp2 sugar transfera 98.8 9.3E-06 2E-10 78.8 29.9 112 327-453 255-371 (374)
94 PF02350 Epimerase_2: UDP-N-ac 98.8 8.2E-08 1.8E-12 91.2 13.0 137 267-424 178-325 (346)
95 PRK15427 colanic acid biosynth 98.7 2E-05 4.3E-10 77.2 28.6 113 326-453 278-404 (406)
96 PLN02949 transferase, transfer 98.7 5.1E-05 1.1E-09 75.1 30.8 114 326-455 334-457 (463)
97 TIGR03087 stp1 sugar transfera 98.7 5.6E-06 1.2E-10 81.0 23.7 86 326-425 279-370 (397)
98 TIGR03568 NeuC_NnaA UDP-N-acet 98.7 4.8E-06 1E-10 80.0 21.8 134 269-422 201-343 (365)
99 cd03804 GT1_wbaZ_like This fam 98.6 1.8E-06 3.8E-11 83.1 17.3 133 272-424 197-334 (351)
100 COG0381 WecB UDP-N-acetylgluco 98.6 4.9E-06 1.1E-10 77.3 19.1 330 1-429 1-353 (383)
101 cd03806 GT1_ALG11_like This fa 98.6 9.5E-05 2.1E-09 72.7 28.7 80 326-418 304-393 (419)
102 KOG3349 Predicted glycosyltran 98.6 5E-07 1.1E-11 71.1 9.2 119 270-396 4-134 (170)
103 cd04950 GT1_like_1 Glycosyltra 98.5 7.8E-05 1.7E-09 72.3 25.2 79 326-418 253-341 (373)
104 PLN00142 sucrose synthase 98.5 4.7E-05 1E-09 78.7 24.4 68 349-426 670-745 (815)
105 PRK15179 Vi polysaccharide bio 98.5 0.00037 8.1E-09 71.9 30.4 91 326-426 573-672 (694)
106 PRK00654 glgA glycogen synthas 98.4 5.9E-05 1.3E-09 75.4 23.0 164 270-455 282-463 (466)
107 PLN02501 digalactosyldiacylgly 98.4 9.2E-05 2E-09 74.4 22.7 116 283-421 557-685 (794)
108 COG0763 LpxB Lipid A disacchar 98.4 3.8E-05 8.3E-10 71.3 18.5 346 4-452 2-379 (381)
109 TIGR02095 glgA glycogen/starch 98.4 0.00025 5.3E-09 71.2 25.2 159 270-453 291-471 (473)
110 cd03791 GT1_Glycogen_synthase_ 98.4 0.00015 3.3E-09 72.8 23.8 128 270-416 296-441 (476)
111 TIGR02918 accessory Sec system 98.2 0.00092 2E-08 67.0 25.4 163 271-453 320-498 (500)
112 cd04946 GT1_AmsK_like This fam 98.2 8.9E-05 1.9E-09 72.7 18.0 111 327-449 289-406 (407)
113 COG5017 Uncharacterized conser 98.2 1.8E-05 3.8E-10 61.4 9.9 125 272-415 2-140 (161)
114 cd03813 GT1_like_3 This family 98.2 0.0014 3E-08 65.7 26.4 90 326-426 353-451 (475)
115 cd04949 GT1_gtfA_like This fam 98.1 0.00039 8.5E-09 67.3 19.4 90 326-424 260-352 (372)
116 PLN02316 synthase/transferase 98.0 0.02 4.4E-07 61.3 31.7 118 327-454 900-1033(1036)
117 PRK14099 glycogen synthase; Pr 98.0 0.0078 1.7E-07 60.3 26.5 41 1-41 1-47 (485)
118 PRK10125 putative glycosyl tra 97.9 0.0042 9.1E-08 60.8 23.2 114 272-411 243-365 (405)
119 PF00534 Glycos_transf_1: Glyc 97.9 7.4E-05 1.6E-09 63.6 9.5 89 326-426 72-167 (172)
120 PRK15484 lipopolysaccharide 1, 97.9 0.00067 1.5E-08 65.9 17.0 113 325-452 255-375 (380)
121 PF13844 Glyco_transf_41: Glyc 97.9 0.00038 8.1E-09 67.7 14.6 148 268-433 283-443 (468)
122 PRK15490 Vi polysaccharide bio 97.8 0.021 4.4E-07 57.0 25.4 64 326-396 454-522 (578)
123 cd01635 Glycosyltransferase_GT 97.7 0.0028 6.1E-08 56.1 17.2 49 326-376 160-216 (229)
124 PRK10017 colanic acid biosynth 97.7 0.066 1.4E-06 52.4 29.4 210 208-433 174-409 (426)
125 TIGR02193 heptsyl_trn_I lipopo 97.6 0.0083 1.8E-07 56.8 19.7 135 268-415 178-319 (319)
126 PF13692 Glyco_trans_1_4: Glyc 97.2 0.00096 2.1E-08 54.1 6.5 80 326-417 52-135 (135)
127 PRK09814 beta-1,6-galactofuran 97.0 0.0025 5.3E-08 60.7 8.2 109 325-450 205-331 (333)
128 PF13477 Glyco_trans_4_2: Glyc 97.0 0.012 2.6E-07 47.9 11.3 103 5-136 1-107 (139)
129 cd03789 GT1_LPS_heptosyltransf 96.9 0.079 1.7E-06 49.0 16.7 102 5-133 1-105 (279)
130 PRK10422 lipopolysaccharide co 96.8 0.086 1.9E-06 50.6 16.9 106 3-133 5-113 (352)
131 TIGR02201 heptsyl_trn_III lipo 96.8 0.073 1.6E-06 50.9 16.1 105 5-133 1-108 (344)
132 PRK10916 ADP-heptose:LPS hepto 96.8 0.14 3.1E-06 49.0 18.1 103 4-133 1-106 (348)
133 COG3914 Spy Predicted O-linked 96.7 0.02 4.3E-07 56.1 11.6 134 267-413 427-574 (620)
134 COG0859 RfaF ADP-heptose:LPS h 96.6 0.062 1.3E-06 51.1 14.3 105 3-133 1-107 (334)
135 PRK10964 ADP-heptose:LPS hepto 96.6 0.042 9.1E-07 52.0 13.2 132 269-416 178-321 (322)
136 TIGR02195 heptsyl_trn_II lipop 96.6 0.27 5.8E-06 46.8 18.5 102 5-133 1-105 (334)
137 PF06258 Mito_fiss_Elm1: Mitoc 96.5 0.073 1.6E-06 49.7 13.7 116 269-395 146-281 (311)
138 PF06722 DUF1205: Protein of u 96.5 0.0064 1.4E-07 45.7 5.0 52 257-308 28-84 (97)
139 PHA01633 putative glycosyl tra 96.3 0.04 8.7E-07 52.0 10.6 83 326-416 200-306 (335)
140 PHA01630 putative group 1 glyc 96.2 0.13 2.8E-06 48.8 13.6 104 333-452 196-328 (331)
141 PF13524 Glyco_trans_1_2: Glyc 96.1 0.053 1.1E-06 40.5 8.8 82 352-449 9-91 (92)
142 PF13579 Glyco_trans_4_4: Glyc 96.0 0.015 3.2E-07 48.3 5.6 98 18-136 5-104 (160)
143 COG1817 Uncharacterized protei 95.9 1.4 2.9E-05 40.4 21.9 104 12-138 8-114 (346)
144 PRK14098 glycogen synthase; Pr 95.8 0.083 1.8E-06 53.1 10.9 164 270-455 307-486 (489)
145 KOG0853 Glycosyltransferase [C 95.7 0.41 9E-06 47.0 14.7 62 357-426 381-442 (495)
146 PRK02261 methylaspartate mutas 95.1 0.53 1.2E-05 38.1 11.4 49 1-49 1-49 (137)
147 PF12000 Glyco_trans_4_3: Gkyc 95.1 0.17 3.8E-06 42.4 8.7 94 29-135 1-95 (171)
148 KOG4626 O-linked N-acetylgluco 95.1 0.49 1.1E-05 47.2 12.7 152 267-434 756-918 (966)
149 TIGR02919 accessory Sec system 94.4 1.2 2.6E-05 43.9 14.0 136 269-432 283-426 (438)
150 PF08660 Alg14: Oligosaccharid 94.4 0.33 7.2E-06 40.9 8.8 114 9-135 3-128 (170)
151 KOG2941 Beta-1,4-mannosyltrans 94.1 5.1 0.00011 37.4 27.5 347 2-416 11-404 (444)
152 COG3660 Predicted nucleoside-d 93.8 4.6 0.0001 36.1 15.1 75 287-371 186-271 (329)
153 PF01975 SurE: Survival protei 93.7 0.15 3.2E-06 44.1 5.5 43 4-47 1-43 (196)
154 TIGR03713 acc_sec_asp1 accesso 93.6 0.67 1.5E-05 46.8 10.8 87 327-430 409-501 (519)
155 PF13439 Glyco_transf_4: Glyco 93.4 1 2.2E-05 37.6 10.5 102 13-140 11-113 (177)
156 PF07429 Glyco_transf_56: 4-al 92.6 2.5 5.5E-05 39.5 12.0 82 327-416 245-332 (360)
157 COG4370 Uncharacterized protei 92.2 0.48 1E-05 42.9 6.6 85 333-426 301-388 (412)
158 PRK13932 stationary phase surv 92.2 1.7 3.6E-05 39.2 10.1 114 3-136 5-133 (257)
159 PRK02797 4-alpha-L-fucosyltran 92.0 3 6.5E-05 38.4 11.5 80 327-414 206-291 (322)
160 PF02374 ArsA_ATPase: Anion-tr 91.9 0.47 1E-05 44.4 6.6 42 4-45 1-43 (305)
161 cd02067 B12-binding B12 bindin 91.9 2.1 4.6E-05 33.6 9.5 106 5-133 1-107 (119)
162 PRK05986 cob(I)alamin adenolsy 91.8 3.9 8.5E-05 35.0 11.4 104 1-118 20-126 (191)
163 PLN02939 transferase, transfer 91.4 4.3 9.4E-05 43.6 13.5 115 327-455 837-967 (977)
164 TIGR00087 surE 5'/3'-nucleotid 91.3 2.5 5.3E-05 38.0 10.2 101 17-136 13-128 (244)
165 COG0438 RfaG Glycosyltransfera 90.7 11 0.00024 35.0 15.2 88 327-426 257-351 (381)
166 cd00561 CobA_CobO_BtuR ATP:cor 89.7 11 0.00023 31.4 12.1 99 4-118 3-106 (159)
167 COG0003 ArsA Predicted ATPase 89.4 1.3 2.9E-05 41.4 7.2 43 3-45 1-44 (322)
168 TIGR02400 trehalose_OtsA alpha 89.0 1.6 3.4E-05 43.5 7.8 100 333-452 342-454 (456)
169 COG0496 SurE Predicted acid ph 88.9 3.3 7.1E-05 37.1 8.8 96 15-136 11-125 (252)
170 COG2894 MinD Septum formation 88.1 3 6.4E-05 36.3 7.6 38 4-41 2-41 (272)
171 COG1484 DnaC DNA replication p 88.0 2.4 5.2E-05 38.5 7.7 47 3-49 105-151 (254)
172 cd02070 corrinoid_protein_B12- 87.1 4.9 0.00011 35.0 8.9 106 3-133 82-189 (201)
173 PRK13935 stationary phase surv 86.5 9.8 0.00021 34.3 10.5 33 16-49 12-44 (253)
174 TIGR00715 precor6x_red precorr 86.5 3.6 7.9E-05 37.3 7.9 92 5-135 2-99 (256)
175 COG1618 Predicted nucleotide k 86.1 3.3 7.3E-05 34.1 6.6 55 3-66 5-59 (179)
176 PF00731 AIRC: AIR carboxylase 85.9 18 0.00038 29.7 10.8 139 271-433 2-148 (150)
177 PRK01077 cobyrinic acid a,c-di 85.6 7.8 0.00017 38.6 10.6 110 1-138 1-124 (451)
178 TIGR00708 cobA cob(I)alamin ad 85.3 20 0.00044 30.2 11.2 98 4-118 6-108 (173)
179 TIGR02370 pyl_corrinoid methyl 85.2 7.5 0.00016 33.7 9.0 105 3-131 84-189 (197)
180 PRK01175 phosphoribosylformylg 85.1 6.2 0.00013 35.9 8.7 60 1-71 1-60 (261)
181 PRK13933 stationary phase surv 84.3 15 0.00033 33.1 10.7 28 20-48 16-43 (253)
182 PF02310 B12-binding: B12 bind 83.6 8.6 0.00019 30.0 8.2 44 5-48 2-45 (121)
183 cd03793 GT1_Glycogen_synthase_ 83.6 3.1 6.7E-05 42.1 6.6 82 337-422 468-556 (590)
184 cd00550 ArsA_ATPase Oxyanion-t 83.6 13 0.00027 33.8 10.2 43 6-49 3-45 (254)
185 PF05159 Capsule_synth: Capsul 83.6 6.4 0.00014 36.1 8.4 39 331-372 187-225 (269)
186 TIGR01007 eps_fam capsular exo 83.2 28 0.00061 30.1 12.0 42 3-44 16-59 (204)
187 PRK08305 spoVFB dipicolinate s 82.6 2.3 5E-05 36.6 4.6 45 2-46 4-48 (196)
188 PF07015 VirC1: VirC1 protein; 82.6 5.5 0.00012 35.2 7.0 44 6-49 4-48 (231)
189 PRK12342 hypothetical protein; 81.9 16 0.00035 33.0 9.9 95 20-136 40-144 (254)
190 PRK06849 hypothetical protein; 81.8 9.3 0.0002 37.2 9.2 36 3-42 4-39 (389)
191 COG2185 Sbm Methylmalonyl-CoA 81.7 4.1 8.8E-05 32.9 5.4 48 1-48 10-57 (143)
192 PF04413 Glycos_transf_N: 3-De 81.4 5.7 0.00012 34.1 6.6 93 11-135 28-125 (186)
193 PF02441 Flavoprotein: Flavopr 81.2 2.5 5.4E-05 33.8 4.2 45 4-49 1-45 (129)
194 PRK14501 putative bifunctional 80.8 16 0.00036 38.9 11.3 110 331-456 346-464 (726)
195 PF06925 MGDG_synth: Monogalac 80.6 3.8 8.2E-05 34.5 5.3 23 16-38 1-24 (169)
196 PRK00346 surE 5'(3')-nucleotid 80.5 15 0.00033 33.0 9.3 100 16-136 12-124 (250)
197 COG2910 Putative NADH-flavin r 80.0 2.3 5E-05 35.8 3.5 37 4-44 1-37 (211)
198 PF03796 DnaB_C: DnaB-like hel 79.9 1.6 3.4E-05 39.8 2.9 126 6-135 22-177 (259)
199 cd01425 RPS2 Ribosomal protein 79.7 9 0.0002 33.1 7.4 114 17-138 42-160 (193)
200 cd03788 GT1_TPS Trehalose-6-Ph 79.5 8.9 0.00019 38.3 8.3 99 333-451 347-458 (460)
201 smart00851 MGS MGS-like domain 79.2 23 0.00049 26.1 8.7 79 20-132 2-89 (90)
202 PHA02542 41 41 helicase; Provi 79.1 9.8 0.00021 38.0 8.4 42 6-47 193-234 (473)
203 PF02951 GSH-S_N: Prokaryotic 78.3 4.3 9.2E-05 31.8 4.4 38 4-41 1-41 (119)
204 COG2109 BtuR ATP:corrinoid ade 78.1 43 0.00092 28.6 10.5 100 4-118 29-133 (198)
205 cd01974 Nitrogenase_MoFe_beta 78.0 21 0.00046 35.4 10.4 27 106-135 376-402 (435)
206 KOG1111 N-acetylglucosaminyltr 78.0 64 0.0014 30.6 20.3 108 8-137 10-123 (426)
207 PRK13934 stationary phase surv 77.4 30 0.00065 31.4 10.1 32 16-48 12-43 (266)
208 PRK13931 stationary phase surv 77.3 26 0.00056 31.8 9.8 102 16-136 12-129 (261)
209 PF00448 SRP54: SRP54-type pro 77.2 17 0.00037 31.4 8.4 41 5-45 3-43 (196)
210 PF10093 DUF2331: Uncharacteri 76.7 73 0.0016 30.6 19.2 98 281-384 191-299 (374)
211 COG1066 Sms Predicted ATP-depe 76.4 35 0.00076 33.0 10.6 102 6-136 96-218 (456)
212 PF01075 Glyco_transf_9: Glyco 76.4 4.2 9.2E-05 36.6 4.7 94 268-371 104-208 (247)
213 cd02069 methionine_synthase_B1 76.3 18 0.00039 31.8 8.4 89 3-114 88-176 (213)
214 PRK08506 replicative DNA helic 76.3 18 0.00039 36.3 9.3 43 6-48 195-237 (472)
215 PF02142 MGS: MGS-like domain 76.2 7.1 0.00015 29.2 5.1 84 20-132 2-94 (95)
216 KOG1387 Glycosyltransferase [C 75.4 74 0.0016 30.0 23.8 340 11-417 54-424 (465)
217 PRK08006 replicative DNA helic 75.2 24 0.00052 35.3 9.9 126 6-135 227-383 (471)
218 cd02071 MM_CoA_mut_B12_BD meth 75.2 38 0.00083 26.6 11.8 109 5-135 1-109 (122)
219 PRK08181 transposase; Validate 74.9 30 0.00064 31.7 9.6 38 4-41 107-144 (269)
220 TIGR03600 phage_DnaB phage rep 74.8 22 0.00048 35.0 9.6 43 6-48 197-240 (421)
221 TIGR00347 bioD dethiobiotin sy 74.5 34 0.00074 28.4 9.5 28 10-37 5-32 (166)
222 PRK06526 transposase; Provisio 74.4 22 0.00049 32.2 8.7 39 3-41 98-136 (254)
223 PF04464 Glyphos_transf: CDP-G 74.2 4.3 9.2E-05 39.2 4.3 97 326-433 251-353 (369)
224 KOG0202 Ca2+ transporting ATPa 74.0 45 0.00098 35.3 11.3 161 270-456 572-751 (972)
225 TIGR01425 SRP54_euk signal rec 73.8 23 0.0005 34.8 9.1 42 5-46 102-143 (429)
226 PRK03359 putative electron tra 73.7 33 0.00072 31.1 9.5 95 20-137 41-148 (256)
227 PRK05973 replicative DNA helic 73.7 33 0.00072 30.7 9.4 45 5-49 66-110 (237)
228 PF01695 IstB_IS21: IstB-like 73.6 5.8 0.00013 33.7 4.5 43 4-46 48-90 (178)
229 PLN03063 alpha,alpha-trehalose 73.5 17 0.00037 39.1 8.9 98 339-455 371-478 (797)
230 cd01121 Sms Sms (bacterial rad 73.2 59 0.0013 31.4 11.7 42 6-47 85-126 (372)
231 PF12146 Hydrolase_4: Putative 73.1 8.8 0.00019 27.5 4.7 37 4-40 16-52 (79)
232 cd01965 Nitrogenase_MoFe_beta_ 73.0 15 0.00032 36.4 7.8 36 94-135 361-396 (428)
233 PF01075 Glyco_transf_9: Glyco 72.9 16 0.00035 32.7 7.6 98 3-136 105-210 (247)
234 COG1703 ArgK Putative periplas 72.1 29 0.00063 32.0 8.5 41 4-44 52-92 (323)
235 PRK02155 ppnK NAD(+)/NADH kina 72.0 14 0.00031 34.2 7.0 53 346-418 64-120 (291)
236 COG0041 PurE Phosphoribosylcar 71.8 54 0.0012 26.8 12.1 143 271-436 4-153 (162)
237 PRK05647 purN phosphoribosylgl 71.7 48 0.001 28.8 9.8 35 4-41 2-38 (200)
238 COG0541 Ffh Signal recognition 71.6 18 0.0004 35.1 7.6 46 4-49 101-146 (451)
239 PRK08760 replicative DNA helic 71.5 23 0.00051 35.5 8.8 43 6-48 232-275 (476)
240 PRK08116 hypothetical protein; 71.2 41 0.00088 30.8 9.7 41 6-46 117-157 (268)
241 cd03114 ArgK-like The function 70.4 58 0.0013 26.6 9.8 36 6-41 2-37 (148)
242 COG0552 FtsY Signal recognitio 70.2 50 0.0011 31.0 9.8 45 5-49 141-185 (340)
243 PF01012 ETF: Electron transfe 69.5 17 0.00036 30.4 6.4 108 6-135 2-121 (164)
244 TIGR02015 BchY chlorophyllide 69.5 40 0.00087 33.2 9.8 27 106-135 354-380 (422)
245 cd01423 MGS_CPS_I_III Methylgl 69.4 38 0.00083 26.3 8.0 87 16-133 11-106 (116)
246 PF02844 GARS_N: Phosphoribosy 69.4 24 0.00052 26.7 6.4 28 106-133 61-91 (100)
247 PRK00090 bioD dithiobiotin syn 69.1 48 0.001 29.2 9.6 29 11-39 8-36 (222)
248 cd01424 MGS_CPS_II Methylglyox 68.7 49 0.0011 25.3 8.4 84 15-133 10-100 (110)
249 PRK08840 replicative DNA helic 67.9 44 0.00096 33.4 9.8 126 6-135 220-376 (464)
250 PRK05595 replicative DNA helic 67.9 27 0.0006 34.7 8.5 43 6-48 204-247 (444)
251 PF00551 Formyl_trans_N: Formy 67.2 78 0.0017 26.9 10.6 106 4-137 1-110 (181)
252 cd01980 Chlide_reductase_Y Chl 67.1 60 0.0013 31.9 10.6 28 106-136 349-376 (416)
253 PRK08939 primosomal protein Dn 66.9 21 0.00044 33.5 6.9 43 5-47 158-200 (306)
254 PRK14106 murD UDP-N-acetylmura 66.9 52 0.0011 32.7 10.4 35 2-41 4-38 (450)
255 PRK13789 phosphoribosylamine-- 66.9 19 0.00041 35.5 7.1 36 3-43 4-39 (426)
256 PRK11823 DNA repair protein Ra 66.5 66 0.0014 32.0 10.7 43 5-47 82-124 (446)
257 PRK05632 phosphate acetyltrans 66.3 83 0.0018 33.3 12.0 36 5-40 4-40 (684)
258 COG0052 RpsB Ribosomal protein 65.9 39 0.00084 30.1 7.8 34 106-139 155-190 (252)
259 TIGR00064 ftsY signal recognit 65.8 72 0.0016 29.3 10.2 39 5-43 74-112 (272)
260 cd00984 DnaB_C DnaB helicase C 65.8 47 0.001 29.6 9.0 43 6-48 16-59 (242)
261 PRK07952 DNA replication prote 65.7 28 0.0006 31.4 7.3 42 5-46 101-142 (244)
262 PRK11889 flhF flagellar biosyn 65.7 66 0.0014 31.4 9.9 40 4-43 242-281 (436)
263 PF10649 DUF2478: Protein of u 65.6 53 0.0012 27.2 8.2 109 9-137 4-132 (159)
264 TIGR02398 gluc_glyc_Psyn gluco 65.1 1.6E+02 0.0035 29.7 13.4 105 331-454 366-482 (487)
265 PRK06321 replicative DNA helic 65.0 50 0.0011 33.1 9.6 43 6-48 229-272 (472)
266 TIGR02655 circ_KaiC circadian 64.9 86 0.0019 31.6 11.4 45 5-49 265-309 (484)
267 PRK07313 phosphopantothenoylcy 64.9 9.9 0.00021 32.5 4.1 43 4-47 2-44 (182)
268 TIGR02195 heptsyl_trn_II lipop 64.7 41 0.00089 31.8 8.8 99 4-136 175-278 (334)
269 PLN02948 phosphoribosylaminoim 64.6 1.1E+02 0.0024 31.6 12.2 85 347-436 467-561 (577)
270 PRK10916 ADP-heptose:LPS hepto 64.4 1E+02 0.0022 29.3 11.5 102 5-136 182-288 (348)
271 PF04127 DFP: DNA / pantothena 64.2 7.9 0.00017 33.2 3.3 22 20-41 32-53 (185)
272 PRK14569 D-alanyl-alanine synt 64.2 15 0.00033 34.1 5.6 39 1-39 1-43 (296)
273 PRK06988 putative formyltransf 64.2 66 0.0014 30.2 9.8 34 2-40 1-34 (312)
274 TIGR03499 FlhF flagellar biosy 64.0 69 0.0015 29.6 9.8 40 5-44 196-237 (282)
275 PRK07004 replicative DNA helic 64.0 49 0.0011 33.0 9.4 43 6-48 216-259 (460)
276 PF02572 CobA_CobO_BtuR: ATP:c 63.9 56 0.0012 27.5 8.3 102 3-118 3-107 (172)
277 PRK14974 cell division protein 63.9 80 0.0017 30.0 10.2 41 4-44 141-181 (336)
278 PF06506 PrpR_N: Propionate ca 63.7 71 0.0015 27.0 9.1 114 15-142 17-157 (176)
279 PRK05920 aromatic acid decarbo 63.3 13 0.00027 32.4 4.4 44 4-48 4-47 (204)
280 TIGR03029 EpsG chain length de 63.2 1.2E+02 0.0026 27.7 11.8 37 4-40 103-141 (274)
281 cd03466 Nitrogenase_NifN_2 Nit 63.2 64 0.0014 31.9 10.0 27 106-135 371-397 (429)
282 cd07039 TPP_PYR_POX Pyrimidine 63.2 89 0.0019 26.1 10.3 29 342-372 62-96 (164)
283 PRK06029 3-octaprenyl-4-hydrox 63.0 14 0.00031 31.5 4.7 44 4-48 2-46 (185)
284 PRK04885 ppnK inorganic polyph 62.8 10 0.00022 34.6 4.0 52 346-417 36-93 (265)
285 COG0287 TyrA Prephenate dehydr 62.7 82 0.0018 29.0 9.9 43 2-49 2-44 (279)
286 PRK12377 putative replication 62.5 42 0.00091 30.3 7.8 42 5-46 103-144 (248)
287 KOG1509 Predicted nucleic acid 62.1 25 0.00053 30.0 5.7 78 29-114 7-84 (209)
288 TIGR02853 spore_dpaA dipicolin 62.1 1.3E+02 0.0029 27.8 16.3 105 18-134 11-119 (287)
289 cd02037 MRP-like MRP (Multiple 61.8 35 0.00076 28.5 7.0 33 11-43 8-40 (169)
290 PRK12311 rpsB 30S ribosomal pr 61.8 37 0.0008 32.0 7.4 34 106-139 151-186 (326)
291 PRK06904 replicative DNA helic 61.5 59 0.0013 32.6 9.4 43 6-48 224-267 (472)
292 PLN02470 acetolactate synthase 61.3 35 0.00076 35.3 8.1 90 275-372 2-109 (585)
293 TIGR02852 spore_dpaB dipicolin 60.7 12 0.00027 32.0 3.9 40 5-44 2-41 (187)
294 PF09314 DUF1972: Domain of un 60.5 1.1E+02 0.0024 26.2 11.1 56 4-66 2-62 (185)
295 PRK05636 replicative DNA helic 60.4 29 0.00062 35.1 7.0 42 6-47 268-310 (505)
296 PF02571 CbiJ: Precorrin-6x re 60.0 55 0.0012 29.6 8.1 94 4-135 1-100 (249)
297 PRK10867 signal recognition pa 59.8 47 0.001 32.8 8.2 42 5-46 102-144 (433)
298 PRK00784 cobyric acid synthase 59.4 1.4E+02 0.0029 30.2 11.7 34 6-39 5-39 (488)
299 PRK06749 replicative DNA helic 59.2 69 0.0015 31.7 9.3 44 6-49 189-232 (428)
300 PRK01231 ppnK inorganic polyph 59.1 33 0.00072 31.9 6.7 52 347-418 64-119 (295)
301 PRK05579 bifunctional phosphop 59.0 17 0.00037 35.4 5.0 47 1-48 4-50 (399)
302 COG0859 RfaF ADP-heptose:LPS h 58.8 1.4E+02 0.0031 28.3 11.2 98 4-136 176-278 (334)
303 PRK06249 2-dehydropantoate 2-r 58.2 17 0.00038 34.1 4.9 42 1-48 3-44 (313)
304 PRK07206 hypothetical protein; 58.2 55 0.0012 32.1 8.7 33 5-42 4-36 (416)
305 COG0504 PyrG CTP synthase (UTP 57.6 79 0.0017 31.3 9.0 41 4-44 1-44 (533)
306 PRK11519 tyrosine kinase; Prov 57.6 2.1E+02 0.0045 30.6 13.2 117 3-135 525-667 (719)
307 PF02056 Glyco_hydro_4: Family 57.3 1.2E+02 0.0027 25.8 10.4 114 17-144 41-176 (183)
308 TIGR00959 ffh signal recogniti 57.1 67 0.0015 31.7 8.7 42 5-46 101-143 (428)
309 PLN02929 NADH kinase 57.1 35 0.00075 31.7 6.4 65 346-418 65-138 (301)
310 PRK09620 hypothetical protein; 56.9 30 0.00065 30.8 5.8 38 1-40 1-52 (229)
311 TIGR02201 heptsyl_trn_III lipo 56.9 1.3E+02 0.0028 28.5 10.8 99 5-136 183-287 (344)
312 TIGR00853 pts-lac PTS system, 56.6 31 0.00066 25.8 5.0 40 1-40 1-40 (95)
313 cd03115 SRP The signal recogni 56.5 1.2E+02 0.0025 25.4 9.3 40 6-45 3-42 (173)
314 TIGR00416 sms DNA repair prote 56.3 1.2E+02 0.0026 30.3 10.5 42 6-47 97-138 (454)
315 PRK10490 sensor protein KdpD; 56.1 59 0.0013 35.7 9.0 40 3-42 24-63 (895)
316 PRK09165 replicative DNA helic 55.6 68 0.0015 32.4 8.8 44 6-49 220-278 (497)
317 TIGR03877 thermo_KaiC_1 KaiC d 55.6 90 0.0019 27.9 8.8 44 5-48 23-66 (237)
318 COG0771 MurD UDP-N-acetylmuram 55.2 92 0.002 30.9 9.3 36 3-43 7-42 (448)
319 PRK14098 glycogen synthase; Pr 55.2 19 0.00042 36.3 4.9 39 3-41 5-49 (489)
320 PRK06718 precorrin-2 dehydroge 55.1 1.4E+02 0.0031 25.9 10.1 143 268-433 10-164 (202)
321 PRK06921 hypothetical protein; 55.0 1.7E+02 0.0037 26.7 11.1 35 5-39 119-154 (266)
322 TIGR00665 DnaB replicative DNA 55.0 80 0.0017 31.2 9.2 43 6-48 198-241 (434)
323 TIGR03878 thermo_KaiC_2 KaiC d 54.9 1.7E+02 0.0036 26.6 10.6 38 5-42 38-75 (259)
324 PRK05748 replicative DNA helic 54.7 75 0.0016 31.7 8.9 44 6-49 206-250 (448)
325 PRK12726 flagellar biosynthesi 54.6 1.2E+02 0.0026 29.5 9.5 40 5-44 208-247 (407)
326 PRK04328 hypothetical protein; 54.5 1E+02 0.0022 27.8 9.1 45 5-49 25-69 (249)
327 TIGR00421 ubiX_pad polyprenyl 54.4 17 0.00036 31.1 3.6 41 6-47 2-42 (181)
328 TIGR00345 arsA arsenite-activa 54.4 27 0.00059 32.3 5.4 24 21-44 3-26 (284)
329 TIGR03880 KaiC_arch_3 KaiC dom 54.3 70 0.0015 28.2 7.9 45 5-49 18-62 (224)
330 PF02606 LpxK: Tetraacyldisacc 54.1 41 0.00089 31.8 6.5 34 9-42 43-76 (326)
331 PRK09739 hypothetical protein; 53.6 35 0.00077 29.5 5.7 39 1-39 1-42 (199)
332 PRK14077 pnk inorganic polypho 53.5 17 0.00038 33.5 3.9 53 346-418 65-121 (287)
333 TIGR01501 MthylAspMutase methy 53.5 46 0.001 26.7 5.8 47 3-49 1-47 (134)
334 TIGR00521 coaBC_dfp phosphopan 53.4 22 0.00048 34.5 4.8 47 1-48 1-47 (390)
335 PRK09841 cryptic autophosphory 53.3 1.7E+02 0.0036 31.4 11.7 41 4-44 531-573 (726)
336 TIGR01283 nifE nitrogenase mol 53.2 2.1E+02 0.0046 28.6 11.8 27 106-135 394-420 (456)
337 COG4088 Predicted nucleotide k 53.2 1.4E+02 0.0031 26.1 8.8 35 6-40 4-38 (261)
338 CHL00067 rps2 ribosomal protei 52.7 58 0.0012 29.0 6.9 34 106-139 160-195 (230)
339 COG0801 FolK 7,8-dihydro-6-hyd 52.6 31 0.00067 28.6 4.8 34 271-304 3-36 (160)
340 PRK14478 nitrogenase molybdenu 52.5 1.2E+02 0.0025 30.6 9.9 25 106-133 392-416 (475)
341 PRK14075 pnk inorganic polypho 52.4 27 0.00059 31.7 5.0 52 346-417 42-94 (256)
342 PRK05854 short chain dehydroge 52.2 1.5E+02 0.0033 27.7 10.2 33 5-40 15-47 (313)
343 PF00862 Sucrose_synth: Sucros 52.1 21 0.00046 35.4 4.3 74 58-138 354-434 (550)
344 COG1698 Uncharacterized protei 52.1 78 0.0017 23.1 6.0 59 405-463 16-75 (93)
345 TIGR01286 nifK nitrogenase mol 52.0 1.2E+02 0.0025 31.0 9.7 27 106-135 436-462 (515)
346 cd01985 ETF The electron trans 52.0 1.5E+02 0.0032 25.1 9.8 30 106-135 90-122 (181)
347 PRK07414 cob(I)yrinic acid a,c 52.0 1.5E+02 0.0032 25.2 10.7 99 4-118 22-126 (178)
348 PF08323 Glyco_transf_5: Starc 51.9 21 0.00046 32.2 4.1 27 15-41 17-43 (245)
349 PF01210 NAD_Gly3P_dh_N: NAD-d 51.9 11 0.00024 31.2 2.2 32 5-41 1-32 (157)
350 KOG0780 Signal recognition par 51.8 39 0.00085 32.3 5.8 45 4-48 102-146 (483)
351 TIGR00460 fmt methionyl-tRNA f 51.7 1.3E+02 0.0029 28.2 9.6 32 4-40 1-32 (313)
352 PRK02649 ppnK inorganic polyph 51.5 16 0.00036 34.0 3.4 53 346-418 69-125 (305)
353 COG1435 Tdk Thymidine kinase [ 51.3 87 0.0019 27.0 7.3 39 2-40 2-41 (201)
354 PRK12827 short chain dehydroge 51.0 1.1E+02 0.0024 27.0 8.9 33 3-39 6-38 (249)
355 TIGR02329 propionate_PrpR prop 51.0 1.7E+02 0.0037 29.8 10.8 42 90-137 131-172 (526)
356 PRK12475 thiamine/molybdopteri 50.7 78 0.0017 30.1 7.9 34 2-40 23-57 (338)
357 PF03808 Glyco_tran_WecB: Glyc 50.7 1.5E+02 0.0033 24.9 10.0 96 20-139 37-136 (172)
358 TIGR01285 nifN nitrogenase mol 50.6 73 0.0016 31.6 8.0 87 4-135 312-398 (432)
359 COG2099 CobK Precorrin-6x redu 50.6 1.3E+02 0.0027 27.2 8.5 92 4-135 3-100 (257)
360 TIGR02113 coaC_strep phosphopa 50.5 22 0.00047 30.2 3.7 42 5-47 2-43 (177)
361 COG1797 CobB Cobyrinic acid a, 50.4 25 0.00054 34.2 4.4 108 5-140 2-123 (451)
362 TIGR01509 HAD-SF-IA-v3 haloaci 50.3 1.3E+02 0.0028 25.0 8.8 93 20-133 90-182 (183)
363 TIGR03018 pepcterm_TyrKin exop 50.2 1.7E+02 0.0037 25.3 11.5 40 4-43 35-77 (207)
364 COG0569 TrkA K+ transport syst 50.0 61 0.0013 28.8 6.7 22 21-42 13-34 (225)
365 PRK01911 ppnK inorganic polyph 50.0 21 0.00046 33.1 3.9 53 346-418 65-121 (292)
366 cd01120 RecA-like_NTPases RecA 49.8 1.4E+02 0.003 24.1 9.9 41 6-46 2-42 (165)
367 PRK06731 flhF flagellar biosyn 49.6 2.1E+02 0.0046 26.2 10.3 40 4-43 76-115 (270)
368 COG2861 Uncharacterized protei 49.5 1.9E+02 0.0042 25.8 9.6 39 90-133 137-178 (250)
369 TIGR00379 cobB cobyrinic acid 49.3 1.7E+02 0.0038 29.1 10.5 105 6-139 2-121 (449)
370 CHL00175 minD septum-site dete 49.2 1.7E+02 0.0036 26.9 9.8 38 4-41 15-54 (281)
371 KOG0832 Mitochondrial/chloropl 49.2 22 0.00047 31.1 3.5 109 15-136 92-204 (251)
372 cd01018 ZntC Metal binding pro 48.9 2.1E+02 0.0046 26.0 11.4 46 90-138 203-250 (266)
373 PRK06182 short chain dehydroge 48.9 1.1E+02 0.0025 27.6 8.7 36 1-40 1-36 (273)
374 PF02585 PIG-L: GlcNAc-PI de-N 48.8 87 0.0019 24.6 6.9 23 19-41 13-35 (128)
375 PRK12724 flagellar biosynthesi 48.7 1.8E+02 0.004 28.6 10.0 42 5-46 225-267 (432)
376 TIGR01005 eps_transp_fam exopo 48.7 2.1E+02 0.0046 30.7 11.8 41 4-44 546-588 (754)
377 PRK07773 replicative DNA helic 48.6 1E+02 0.0023 33.8 9.4 44 6-49 220-264 (886)
378 PRK09004 FMN-binding protein M 48.5 1.1E+02 0.0025 24.8 7.6 37 1-39 1-38 (146)
379 TIGR00725 conserved hypothetic 48.4 63 0.0014 26.9 6.1 99 258-375 22-125 (159)
380 PLN02327 CTP synthase 48.0 1.2E+02 0.0025 31.0 8.8 41 5-45 2-45 (557)
381 PRK06270 homoserine dehydrogen 48.0 79 0.0017 30.1 7.6 58 336-394 80-149 (341)
382 COG0132 BioD Dethiobiotin synt 47.9 2E+02 0.0043 25.5 11.0 37 4-40 2-40 (223)
383 PRK12446 undecaprenyldiphospho 47.9 55 0.0012 31.4 6.5 32 340-371 86-120 (352)
384 cd03113 CTGs CTP synthetase (C 47.8 1.4E+02 0.0031 26.8 8.3 39 6-44 2-43 (255)
385 PRK04539 ppnK inorganic polyph 47.8 23 0.00049 33.0 3.7 53 346-418 69-125 (296)
386 PRK10499 PTS system N,N'-diace 47.7 45 0.00097 25.5 4.7 38 1-38 1-38 (106)
387 COG2085 Predicted dinucleotide 47.6 1.7E+02 0.0036 25.7 8.6 30 12-43 7-36 (211)
388 PRK10422 lipopolysaccharide co 47.5 86 0.0019 29.9 7.9 84 19-135 203-288 (352)
389 PRK10964 ADP-heptose:LPS hepto 47.4 1.6E+02 0.0036 27.5 9.7 27 108-136 254-280 (322)
390 cd01017 AdcA Metal binding pro 47.1 1.7E+02 0.0038 26.9 9.5 44 90-136 206-251 (282)
391 TIGR01081 mpl UDP-N-acetylmura 47.1 96 0.0021 30.9 8.4 30 6-39 2-31 (448)
392 PRK03708 ppnK inorganic polyph 47.0 21 0.00045 32.9 3.3 52 346-417 58-112 (277)
393 PRK12824 acetoacetyl-CoA reduc 46.9 2E+02 0.0043 25.3 9.8 33 6-41 4-36 (245)
394 PRK08057 cobalt-precorrin-6x r 46.7 1.3E+02 0.0028 27.2 8.2 90 4-135 3-99 (248)
395 PF02702 KdpD: Osmosensitive K 46.6 33 0.00071 29.7 4.1 40 3-42 5-44 (211)
396 PRK07097 gluconate 5-dehydroge 46.5 1.3E+02 0.0029 27.0 8.7 33 5-40 11-43 (265)
397 cd02034 CooC The accessory pro 46.4 1.4E+02 0.003 23.2 11.2 37 5-41 1-37 (116)
398 COG2874 FlaH Predicted ATPases 46.4 98 0.0021 27.2 6.9 36 7-42 32-67 (235)
399 PRK11064 wecC UDP-N-acetyl-D-m 46.3 32 0.00069 33.8 4.7 35 1-40 1-35 (415)
400 TIGR00750 lao LAO/AO transport 46.2 1.2E+02 0.0026 28.3 8.4 40 4-43 35-74 (300)
401 PRK08309 short chain dehydroge 46.2 1.8E+02 0.004 24.6 9.4 20 21-40 13-32 (177)
402 PRK13982 bifunctional SbtC-lik 46.1 29 0.00063 34.6 4.4 40 2-41 255-306 (475)
403 PRK10416 signal recognition pa 46.1 1.4E+02 0.003 28.1 8.8 39 5-43 116-154 (318)
404 cd03789 GT1_LPS_heptosyltransf 46.1 1.5E+02 0.0032 27.1 8.9 99 5-136 123-225 (279)
405 KOG1208 Dehydrogenases with di 46.0 1.3E+02 0.0027 28.4 8.4 34 5-41 36-69 (314)
406 TIGR01969 minD_arch cell divis 46.0 1.9E+02 0.004 25.8 9.5 36 6-41 3-39 (251)
407 cd07038 TPP_PYR_PDC_IPDC_like 45.8 1.7E+02 0.0038 24.2 8.6 27 347-373 61-93 (162)
408 TIGR01162 purE phosphoribosyla 45.7 1.7E+02 0.0038 24.2 12.5 135 274-434 3-147 (156)
409 PRK06128 oxidoreductase; Provi 45.7 1.3E+02 0.0029 27.8 8.7 33 5-40 56-88 (300)
410 PRK10818 cell division inhibit 45.7 2.1E+02 0.0045 26.0 9.9 32 11-42 11-42 (270)
411 COG1448 TyrB Aspartate/tyrosin 45.6 2.4E+02 0.0051 27.2 9.9 81 344-439 253-333 (396)
412 PF01297 TroA: Periplasmic sol 45.4 96 0.0021 28.0 7.5 81 31-137 149-231 (256)
413 TIGR01011 rpsB_bact ribosomal 45.3 1.1E+02 0.0023 27.2 7.4 34 106-139 154-189 (225)
414 PRK02231 ppnK inorganic polyph 44.9 19 0.00042 32.9 2.8 56 339-416 38-97 (272)
415 PRK03372 ppnK inorganic polyph 44.9 25 0.00055 32.8 3.6 53 346-418 73-129 (306)
416 PF04244 DPRP: Deoxyribodipyri 44.5 30 0.00065 30.6 3.8 26 16-41 47-72 (224)
417 cd01968 Nitrogenase_NifE_I Nit 44.5 2.3E+02 0.0049 27.8 10.4 26 106-134 355-380 (410)
418 PRK06180 short chain dehydroge 44.0 40 0.00087 30.8 4.8 37 1-40 1-37 (277)
419 cd01421 IMPCH Inosine monophos 44.0 1.5E+02 0.0032 25.4 7.6 37 19-66 12-48 (187)
420 PRK03378 ppnK inorganic polyph 43.9 26 0.00057 32.5 3.5 52 346-417 64-119 (292)
421 COG1748 LYS9 Saccharopine dehy 43.8 1.9E+02 0.0042 28.1 9.3 34 3-41 1-35 (389)
422 cd02065 B12-binding_like B12 b 43.6 65 0.0014 25.0 5.4 43 6-48 2-44 (125)
423 PTZ00445 p36-lilke protein; Pr 43.5 2.2E+02 0.0048 25.0 8.7 109 15-136 74-206 (219)
424 PF00148 Oxidored_nitro: Nitro 43.2 2.3E+02 0.005 27.6 10.3 86 18-135 281-366 (398)
425 PRK06079 enoyl-(acyl carrier p 43.1 1.8E+02 0.004 26.0 9.0 33 5-39 8-41 (252)
426 TIGR02700 flavo_MJ0208 archaeo 43.0 40 0.00086 30.1 4.5 37 12-48 7-46 (234)
427 PRK07688 thiamine/molybdopteri 42.9 97 0.0021 29.5 7.2 34 2-40 23-57 (339)
428 PRK08226 short chain dehydroge 42.7 1.8E+02 0.0039 26.1 8.9 34 5-41 7-40 (263)
429 PF07355 GRDB: Glycine/sarcosi 42.7 42 0.00091 31.6 4.6 41 93-136 69-119 (349)
430 PRK05703 flhF flagellar biosyn 42.5 2.5E+02 0.0054 27.8 10.2 40 5-44 223-264 (424)
431 PF05693 Glycogen_syn: Glycoge 42.5 26 0.00057 35.7 3.4 90 336-431 462-566 (633)
432 PRK01185 ppnK inorganic polyph 42.4 30 0.00065 31.7 3.6 53 346-418 53-106 (271)
433 PRK13982 bifunctional SbtC-lik 42.3 42 0.00091 33.5 4.8 45 3-48 70-114 (475)
434 PRK13234 nifH nitrogenase redu 42.2 51 0.0011 30.7 5.2 42 1-42 1-43 (295)
435 PLN02939 transferase, transfer 42.2 45 0.00098 36.3 5.3 39 3-41 481-525 (977)
436 PRK06719 precorrin-2 dehydroge 42.1 46 0.001 27.6 4.4 35 3-42 13-47 (157)
437 PRK07985 oxidoreductase; Provi 42.1 1.7E+02 0.0036 27.1 8.7 32 5-39 50-81 (294)
438 PF13460 NAD_binding_10: NADH( 42.1 39 0.00084 28.4 4.2 44 11-66 4-47 (183)
439 TIGR01829 AcAcCoA_reduct aceto 42.0 1.8E+02 0.0039 25.5 8.7 31 6-39 2-32 (242)
440 PF09001 DUF1890: Domain of un 41.9 40 0.00086 27.0 3.7 35 15-49 11-45 (139)
441 cd01124 KaiC KaiC is a circadi 41.7 88 0.0019 26.4 6.4 44 6-49 2-45 (187)
442 PRK12825 fabG 3-ketoacyl-(acyl 41.5 58 0.0013 28.8 5.5 37 1-41 4-40 (249)
443 PF02826 2-Hacid_dh_C: D-isome 41.1 41 0.00089 28.5 4.1 106 268-412 36-142 (178)
444 PRK08862 short chain dehydroge 41.0 2.1E+02 0.0046 25.2 8.9 32 5-39 6-37 (227)
445 PRK08589 short chain dehydroge 40.9 2E+02 0.0044 26.0 9.0 33 5-40 7-39 (272)
446 PRK05693 short chain dehydroge 40.7 2E+02 0.0042 26.1 8.9 32 6-40 3-34 (274)
447 PRK12935 acetoacetyl-CoA reduc 40.4 2.2E+02 0.0047 25.2 9.0 32 5-39 7-38 (247)
448 PRK03501 ppnK inorganic polyph 40.4 36 0.00077 31.1 3.7 53 347-418 41-98 (264)
449 PRK06067 flagellar accessory p 40.4 1.1E+02 0.0024 27.1 7.0 44 5-48 27-70 (234)
450 TIGR03371 cellulose_yhjQ cellu 40.3 2.6E+02 0.0057 24.7 12.0 38 6-43 4-42 (246)
451 TIGR01990 bPGM beta-phosphoglu 40.2 2.2E+02 0.0048 23.8 8.7 23 20-42 92-114 (185)
452 TIGR00639 PurN phosphoribosylg 39.9 2.4E+02 0.0053 24.2 10.7 35 4-41 1-37 (190)
453 PF03853 YjeF_N: YjeF-related 39.8 55 0.0012 27.5 4.6 36 3-39 25-60 (169)
454 TIGR01449 PGP_bact 2-phosphogl 39.8 1.4E+02 0.003 25.8 7.5 96 20-135 90-185 (213)
455 PRK06179 short chain dehydroge 39.5 51 0.0011 29.8 4.8 37 1-40 1-37 (270)
456 cd07025 Peptidase_S66 LD-Carbo 39.5 41 0.00089 31.1 4.1 75 280-373 44-120 (282)
457 PRK12939 short chain dehydroge 39.5 2.2E+02 0.0049 25.1 9.0 32 6-40 9-40 (250)
458 PRK07370 enoyl-(acyl carrier p 39.4 2.6E+02 0.0055 25.1 9.4 33 5-39 7-40 (258)
459 PRK06947 glucose-1-dehydrogena 39.4 2.3E+02 0.0049 25.1 9.0 31 6-39 4-34 (248)
460 PRK05380 pyrG CTP synthetase; 39.4 1.6E+02 0.0036 29.8 8.3 42 4-45 2-46 (533)
461 cd00672 CysRS_core catalytic c 39.4 90 0.002 27.4 6.0 91 13-131 35-129 (213)
462 PRK05993 short chain dehydroge 39.3 47 0.001 30.4 4.5 37 1-40 1-37 (277)
463 cd01141 TroA_d Periplasmic bin 39.2 46 0.001 28.2 4.2 30 106-135 68-99 (186)
464 cd00532 MGS-like MGS-like doma 39.1 1.8E+02 0.0038 22.4 8.3 86 16-134 10-105 (112)
465 PRK13896 cobyrinic acid a,c-di 39.0 4E+02 0.0086 26.4 10.9 37 5-41 3-40 (433)
466 PHA02754 hypothetical protein; 39.0 49 0.0011 21.8 3.1 25 410-434 6-30 (67)
467 PRK00048 dihydrodipicolinate r 38.9 2E+02 0.0042 26.1 8.4 57 336-396 53-115 (257)
468 PRK01966 ddl D-alanyl-alanine 38.7 57 0.0012 31.0 5.0 41 1-41 1-45 (333)
469 TIGR03609 S_layer_CsaB polysac 38.5 3.2E+02 0.007 25.2 21.4 113 269-391 172-291 (298)
470 TIGR00337 PyrG CTP synthase. C 38.5 1.7E+02 0.0037 29.7 8.3 40 5-44 2-44 (525)
471 TIGR02247 HAD-1A3-hyp Epoxide 38.3 1.7E+02 0.0038 25.2 7.8 98 20-137 99-198 (211)
472 PRK08591 acetyl-CoA carboxylas 38.2 2.9E+02 0.0063 27.4 10.3 35 3-42 2-36 (451)
473 COG0503 Apt Adenine/guanine ph 38.2 64 0.0014 27.4 4.8 37 95-134 44-82 (179)
474 PRK11199 tyrA bifunctional cho 37.7 3.9E+02 0.0084 25.9 11.6 32 4-40 99-131 (374)
475 PRK06732 phosphopantothenate-- 37.6 45 0.00098 29.7 3.9 31 8-40 19-49 (229)
476 PRK13604 luxD acyl transferase 37.3 71 0.0015 29.8 5.2 35 4-38 37-71 (307)
477 PRK09302 circadian clock prote 37.2 4.1E+02 0.0089 27.0 11.2 45 5-49 275-319 (509)
478 PF13419 HAD_2: Haloacid dehal 37.0 2.3E+02 0.005 23.0 10.2 95 20-134 82-176 (176)
479 PLN02240 UDP-glucose 4-epimera 36.8 56 0.0012 31.0 4.8 35 1-39 3-37 (352)
480 PF03685 UPF0147: Uncharacteri 36.8 1.6E+02 0.0035 21.4 5.7 58 405-462 9-67 (85)
481 KOG2825 Putative arsenite-tran 36.7 3.3E+02 0.0071 24.7 9.9 45 3-47 18-63 (323)
482 PRK07308 flavodoxin; Validated 36.6 51 0.0011 26.8 3.8 38 1-40 1-39 (146)
483 PRK09456 ?-D-glucose-1-phospha 36.6 2.3E+02 0.0051 24.2 8.3 99 19-136 88-186 (199)
484 cd01715 ETF_alpha The electron 36.4 2.5E+02 0.0055 23.3 10.5 30 106-135 82-114 (168)
485 TIGR02699 archaeo_AfpA archaeo 36.3 62 0.0013 27.4 4.3 34 14-47 9-44 (174)
486 KOG2387 CTP synthase (UTP-ammo 36.1 1.4E+02 0.003 29.2 6.9 42 4-45 1-45 (585)
487 PRK06395 phosphoribosylamine-- 36.1 2.4E+02 0.0052 28.0 9.1 32 4-40 3-34 (435)
488 COG4394 Uncharacterized protei 36.1 3.2E+02 0.0069 25.2 8.7 31 11-41 11-42 (370)
489 PLN02935 Bifunctional NADH kin 36.0 47 0.001 33.2 4.0 52 346-418 263-319 (508)
490 PRK01372 ddl D-alanine--D-alan 36.0 65 0.0014 29.9 5.0 40 1-40 2-45 (304)
491 PLN03050 pyridoxine (pyridoxam 35.9 65 0.0014 29.1 4.6 33 4-39 61-95 (246)
492 PRK13886 conjugal transfer pro 35.9 77 0.0017 28.4 5.0 46 1-46 1-46 (241)
493 PF03721 UDPG_MGDP_dh_N: UDP-g 35.9 67 0.0014 27.5 4.6 33 4-41 1-33 (185)
494 PRK12743 oxidoreductase; Provi 35.8 2.6E+02 0.0057 24.9 8.8 31 6-39 4-34 (256)
495 PRK14568 vanB D-alanine--D-lac 35.8 64 0.0014 30.7 4.9 41 1-41 1-45 (343)
496 PRK04330 hypothetical protein; 35.8 1.7E+02 0.0036 21.5 5.7 57 406-462 13-70 (88)
497 TIGR00110 ilvD dihydroxy-acid 35.6 1.8E+02 0.004 29.5 8.0 34 106-139 88-125 (535)
498 COG2120 Uncharacterized protei 35.3 62 0.0013 29.0 4.4 39 2-40 9-47 (237)
499 KOG1250 Threonine/serine dehyd 35.2 72 0.0016 30.7 4.9 62 349-418 248-317 (457)
500 PRK05299 rpsB 30S ribosomal pr 35.1 1.4E+02 0.0031 27.1 6.7 34 106-139 156-191 (258)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1e-66 Score=506.32 Aligned_cols=432 Identities=32% Similarity=0.655 Sum_probs=340.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
.||+++|++++||++||+.||+.|+.+|++|||+++..+...+..... ...+++++.+|++.+... ..+...+..
T Consensus 7 ~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~g~~~~~-~~~~~~l~~ 81 (448)
T PLN02562 7 PKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISDGQDDDP-PRDFFSIEN 81 (448)
T ss_pred cEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCCCCCCCc-cccHHHHHH
Confidence 499999999999999999999999999999999999987766544321 113699999998765432 223445555
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCCCC
Q 012314 84 KCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGTP 163 (466)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 163 (466)
.+...+.+.++++++.++.. .+++|||+|.+..|+..+|+++|||++.|+++.+.....+.+++.....+..+..+.+
T Consensus 82 a~~~~~~~~l~~ll~~l~~~--~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (448)
T PLN02562 82 SMENTMPPQLERLLHKLDED--GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCP 159 (448)
T ss_pred HHHHhchHHHHHHHHHhcCC--CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccc
Confidence 66556788899999887531 2459999999999999999999999999999998888877766543322221111111
Q ss_pred CccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHh---------hcCCcc
Q 012314 164 MSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFT---------TFPELL 234 (466)
Q Consensus 164 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~---------~~p~v~ 234 (466)
........+|+++.++..+++ .++............+.+..+...+++.+++||+.+||+.... ..|+++
T Consensus 160 ~~~~~~~~~Pg~~~l~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~ 238 (448)
T PLN02562 160 RQLEKICVLPEQPLLSTEDLP-WLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQIL 238 (448)
T ss_pred ccccccccCCCCCCCChhhCc-chhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEE
Confidence 111223368888888888888 4432222122334555555666778999999999999984322 347899
Q ss_pred eeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEecccc-ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCC
Q 012314 235 PIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFT-ILDQVQFQELALGLELCKRPFLWVVRPDITTDA 313 (466)
Q Consensus 235 ~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~ 313 (466)
.|||++............++.+.+|.+|+++++++++|||||||.. ..+.++++.++.+++.++++|||++... .
T Consensus 239 ~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~----~ 314 (448)
T PLN02562 239 QIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV----W 314 (448)
T ss_pred EecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC----c
Confidence 9999987542110001113445678899999988899999999975 6789999999999999999999999754 1
Q ss_pred CCCCchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeE
Q 012314 314 NDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLK 393 (466)
Q Consensus 314 ~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~ 393 (466)
.+.++++++++.++|+++++|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.||+++++.+|+|+.
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~ 394 (448)
T PLN02562 315 REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVR 394 (448)
T ss_pred hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeE
Confidence 23578889888899999999999999999999999999999999999999999999999999999999999874699988
Q ss_pred eecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012314 394 FDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 453 (466)
Q Consensus 394 l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 453 (466)
+ ..++.++|.++|+++|.|++||+||++++++++++ .+||||.+++++||++++
T Consensus 395 ~-----~~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 395 I-----SGFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred e-----CCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 8 45799999999999999999999999999999876 567899999999999863
No 2
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.7e-65 Score=494.20 Aligned_cols=432 Identities=26% Similarity=0.495 Sum_probs=339.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcch-HHHHHhhhcCCCCCCCeEEEecCCCCCCCC--CCc
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNH-KRVVESLQGKNYLGEQIHLVSIPDGMEPWE--DRN 76 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 76 (466)
|++.||+++|++++||++|++.||+.|+. +|+.|||++++.+. ..+... ....++++++.+++++++.. ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~----~~~~~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN----HNNVENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc----CCCCCCEEEEEcCCCCCCccccccc
Confidence 88999999999999999999999999996 79999999998642 111111 01123699999998887652 233
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCc
Q 012314 77 DLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGI 156 (466)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (466)
+...++..+.+.+.+.++++++++...+ .+++|||+|.+.+|+..+|+++|||++.|++++++....+++++...
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~---- 151 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNGD-SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN---- 151 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhccC-CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC----
Confidence 5556677777788899999998865322 45699999999999999999999999999999999888887654210
Q ss_pred cCCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhc--cccEEEEcChhhccHHHHhhcC--C
Q 012314 157 IDSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMI--AVNFHFCNSTYELESEAFTTFP--E 232 (466)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vl~~s~~~le~~~~~~~p--~ 232 (466)
.....+|+++.++..+++ .++............+.+..+... .++.+++||+++||+....... +
T Consensus 152 ----------~~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~ 220 (455)
T PLN02152 152 ----------NSVFEFPNLPSLEIRDLP-SFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIE 220 (455)
T ss_pred ----------CCeeecCCCCCCchHHCc-hhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCC
Confidence 012358888888888888 554332223333444444444442 3579999999999987776663 6
Q ss_pred cceeccccCCCC--CCCCCC--CcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCC
Q 012314 233 LLPIGPLLASNR--LGNTAG--YFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPD 308 (466)
Q Consensus 233 v~~VGpl~~~~~--~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 308 (466)
++.|||++.... ...... ..+..+.++.+|||+++++++|||||||...++.+++++++.+|+.++.+|||++...
T Consensus 221 v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~ 300 (455)
T PLN02152 221 MVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDK 300 (455)
T ss_pred EEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 999999975321 000000 0112345799999999888999999999999999999999999999999999999753
Q ss_pred CCC-----CC---CCCCchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhh
Q 012314 309 ITT-----DA---NDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLN 380 (466)
Q Consensus 309 ~~~-----~~---~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~ 380 (466)
... .. ...+++++.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~n 380 (455)
T PLN02152 301 LNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPAN 380 (455)
T ss_pred cccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHH
Confidence 110 00 0124678888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 012314 381 ERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ--DFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 452 (466)
Q Consensus 381 a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~--~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~ 452 (466)
|+++++.+|+|+.+..++.+.++.++|+++|+++|+|+ ++|+||+++++++++++++||+|.+++++|++++
T Consensus 381 a~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 381 AKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999856888887543234579999999999999765 5899999999999999999999999999999976
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-65 Score=496.54 Aligned_cols=432 Identities=26% Similarity=0.524 Sum_probs=338.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCC-CCccHHHH
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWE-DRNDLGKL 81 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 81 (466)
+.||+++|++++||++||+.||+.|+.+|+.|||++++.+... .. ....++++..+|+++++.. .......+
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~---~~----~~~~~i~~~~ip~glp~~~~~~~~~~~~ 79 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS---PS----DDFTDFQFVTIPESLPESDFKNLGPIEF 79 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc---cc----cCCCCeEEEeCCCCCCcccccccCHHHH
Confidence 4699999999999999999999999999999999999876421 10 1123699999998887631 22233456
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCc-cCCC
Q 012314 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGI-IDSH 160 (466)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~-~~~~ 160 (466)
+..+.+.+.+.++++++.+..+.+.+++|||+|.+..|+..+|+++|||++.|+++++..+..+.+++.....+. .+..
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLK 159 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcc
Confidence 666666778888888887643222567999999999999999999999999999999988877766543332211 0100
Q ss_pred CCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhc-----CCcce
Q 012314 161 GTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-----PELLP 235 (466)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~-----p~v~~ 235 (466)
... .+....+|+++.++..+++ ..... .. ......+... ....+++.+++||+++||+...+.. +++++
T Consensus 160 ~~~--~~~~~~iPg~~~~~~~dlp-~~~~~-~~-~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~ 233 (451)
T PLN02410 160 EPK--GQQNELVPEFHPLRCKDFP-VSHWA-SL-ESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVYP 233 (451)
T ss_pred ccc--cCccccCCCCCCCChHHCc-chhcC-Cc-HHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEE
Confidence 000 1122358888888877777 32211 11 1222222222 2346889999999999998755543 58999
Q ss_pred eccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCC--C
Q 012314 236 IGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTD--A 313 (466)
Q Consensus 236 VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~--~ 313 (466)
|||++...... ...+..+.+|.+|+|+++++++|||||||....+.+++.+++.+|+.++.+|+|+++.+...+ .
T Consensus 234 vGpl~~~~~~~---~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~ 310 (451)
T PLN02410 234 IGPLHLVASAP---TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEW 310 (451)
T ss_pred ecccccccCCC---ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccch
Confidence 99998643211 011223346889999998889999999999889999999999999999999999998431100 1
Q ss_pred CCCCchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeE
Q 012314 314 NDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLK 393 (466)
Q Consensus 314 ~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~ 393 (466)
...+|++|+++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.
T Consensus 311 ~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~ 390 (451)
T PLN02410 311 IESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQ 390 (451)
T ss_pred hhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEE
Confidence 12479999999999999999999999999999999999999999999999999999999999999999999875699999
Q ss_pred eecCCCCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012314 394 FDRDEGGIITREEIKNKVDQVLGNQ---DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKT 454 (466)
Q Consensus 394 l~~~~~~~~~~~~l~~~i~~ll~~~---~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~ 454 (466)
+. ..++.++|+++|+++|.++ +||++|+++++++++++++||+|.+++++||+.+.+
T Consensus 391 ~~----~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 391 VE----GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred eC----CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 95 6789999999999999765 799999999999999999999999999999999875
No 4
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.9e-65 Score=493.56 Aligned_cols=444 Identities=23% Similarity=0.432 Sum_probs=335.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcch-HHHHHhhhcCCCCCCCeEEEecCCCCCCC--CCC
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYNH-KRVVESLQGKNYLGEQIHLVSIPDGMEPW--EDR 75 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rG--h~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 75 (466)
|++.||+++|++++||++||+.||+.|+.+| ..|||++++.+. ..+...........++++|+.+|+..... ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 8999999999999999999999999999998 999999998765 22322221111111369999999643211 112
Q ss_pred ccHHHHHHHHHHhccHHH----HHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccc
Q 012314 76 NDLGKLIEKCLQVMPGKL----EELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKL 151 (466)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~----~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 151 (466)
.+...++..+.+.+.+.+ .++++....++ .+++|||+|.+.+|+..+|+++|||++.|+++.+.....+.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDG-VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCC-CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 234444444444554434 44444322111 3359999999999999999999999999999999888887776533
Q ss_pred cccCccCCCCCCCccccccccCCC-CCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHH---
Q 012314 152 IDDGIIDSHGTPMSMQMFRIAPKM-PEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAF--- 227 (466)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~--- 227 (466)
.... .....+.. +....+|++ +.+...+++ .++..... ...+.+......+++.+++||+++||++..
T Consensus 160 ~~~~--~~~~~~~~-~~~~~vPgl~~~l~~~dlp-~~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~ 231 (468)
T PLN02207 160 HSKD--TSVFVRNS-EEMLSIPGFVNPVPANVLP-SALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVNHF 231 (468)
T ss_pred cccc--cccCcCCC-CCeEECCCCCCCCChHHCc-chhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHH
Confidence 2110 00001111 133468998 678888888 44432221 233334445668899999999999998632
Q ss_pred ---hhcCCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEE
Q 012314 228 ---TTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWV 304 (466)
Q Consensus 228 ---~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~ 304 (466)
+..|+++.|||++.......+... ...+++|.+|+++++++++|||||||....+.+++++++.+|+.++++|||+
T Consensus 232 ~~~~~~p~v~~VGPl~~~~~~~~~~~~-~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~ 310 (468)
T PLN02207 232 LDEQNYPSVYAVGPIFDLKAQPHPEQD-LARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWS 310 (468)
T ss_pred HhccCCCcEEEecCCcccccCCCCccc-cchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 345789999999865421100000 1133579999999988899999999998899999999999999999999999
Q ss_pred EcCCCCCCCCCCCchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHH
Q 012314 305 VRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYI 384 (466)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv 384 (466)
++.... ...+.+|++++++.++|+.+++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++
T Consensus 311 ~r~~~~-~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~ 389 (468)
T PLN02207 311 LRTEEV-TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLM 389 (468)
T ss_pred EeCCCc-cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHH
Confidence 985311 1123578999998999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhceeEeecC----CCCCcCHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012314 385 CDFWKVGLKFDRD----EGGIITREEIKNKVDQVLG--NQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 455 (466)
Q Consensus 385 ~~~~G~G~~l~~~----~~~~~~~~~l~~~i~~ll~--~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~ 455 (466)
++.+|+|+.+..+ +.+.++.++|.++|+++|. +++||+||+++++++++++.+||+|.+++++|++++...
T Consensus 390 ~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~~ 466 (468)
T PLN02207 390 VKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIGI 466 (468)
T ss_pred HHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 7757999977421 1235699999999999997 679999999999999999999999999999999998764
No 5
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=5.8e-65 Score=493.80 Aligned_cols=446 Identities=30% Similarity=0.536 Sum_probs=346.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhh---hc--CCCCCCCeEEEecCCCCCCCCC-Cc
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESL---QG--KNYLGEQIHLVSIPDGMEPWED-RN 76 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (466)
+.||+++|+|++||++||+.||+.|+.+|..|||++++.+...+.+.. .. .......++|..+|++++.... ..
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 579999999999999999999999999999999999997766554311 00 0001223777778887765422 33
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCc
Q 012314 77 DLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGI 156 (466)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (466)
+...++..+.+.+.+.++++++.+..+. .+++|||+|.+..|+..+|+++|||+++|++++++.+..+.+++.. .
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~----~ 161 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQG-RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHG----L 161 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccC-CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhc----C
Confidence 4455666666667888999998764322 4459999999999999999999999999999999988888776421 1
Q ss_pred cCCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhc---CCc
Q 012314 157 IDSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF---PEL 233 (466)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~---p~v 233 (466)
.+....... +....+|++|.++..+++ .++............+.+..+...+++.+++||+.+||......+ ..+
T Consensus 162 ~~~~~~~~~-~~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v 239 (480)
T PLN02555 162 VPFPTETEP-EIDVQLPCMPLLKYDEIP-SFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCPI 239 (480)
T ss_pred CCcccccCC-CceeecCCCCCcCHhhCc-ccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCCE
Confidence 110001101 122468999988889988 544322122333444555556677899999999999998765543 138
Q ss_pred ceeccccCCCCCC-CC-CCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 012314 234 LPIGPLLASNRLG-NT-AGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT 311 (466)
Q Consensus 234 ~~VGpl~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 311 (466)
+.|||++...... .. ....+..+++|.+|++.++++++|||||||....+.+++.+++.+++..+++|||+++.....
T Consensus 240 ~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~ 319 (480)
T PLN02555 240 KPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKD 319 (480)
T ss_pred EEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCccc
Confidence 9999997542211 00 011234456799999999888999999999988899999999999999999999998743111
Q ss_pred --CCCCCCchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhh
Q 012314 312 --DANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWK 389 (466)
Q Consensus 312 --~~~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G 389 (466)
.....+|+++.++.++|+++++|+||.+||.|++|++|||||||||++||+++|||||++|+++||+.||+++++.||
T Consensus 320 ~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~g 399 (480)
T PLN02555 320 SGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFK 399 (480)
T ss_pred ccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhC
Confidence 012347888888888999999999999999999999999999999999999999999999999999999999998679
Q ss_pred ceeEeecC--CCCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012314 390 VGLKFDRD--EGGIITREEIKNKVDQVLGNQ---DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 455 (466)
Q Consensus 390 ~G~~l~~~--~~~~~~~~~l~~~i~~ll~~~---~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~ 455 (466)
+|+.+... +...++.++|.++|+++|.++ ++|+||++|+++.++++++||+|.+++++||+++...
T Consensus 400 vGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 400 TGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred ceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 99999421 124689999999999999653 7999999999999999999999999999999999876
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-64 Score=487.15 Aligned_cols=423 Identities=28% Similarity=0.564 Sum_probs=333.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCC--CCCccHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW--EDRNDLGKL 81 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 81 (466)
.||+++|++++||++||+.||+.|+.+|+.|||++++.+...+... ...+++++.+|+++++. +...+...+
T Consensus 6 ~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ipdglp~~~~~~~~~~~~~ 79 (449)
T PLN02173 6 GHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATISDGYDQGGFSSAGSVPEY 79 (449)
T ss_pred cEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcCCCCCCcccccccCHHHH
Confidence 5999999999999999999999999999999999999875544221 11369999999988763 223345667
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCC
Q 012314 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHG 161 (466)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (466)
+..+.+.+.+.++++++.+..+. .+.||||+|.+.+|+..+|+++|||++.|++++++....+++. . ...+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~-~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~-~~~~------ 150 (449)
T PLN02173 80 LQNFKTFGSKTVADIIRKHQSTD-NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-Y-INNG------ 150 (449)
T ss_pred HHHHHHhhhHHHHHHHHHhhccC-CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-H-hccC------
Confidence 77777778889999998864321 2349999999999999999999999999999888776554331 1 1100
Q ss_pred CCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhc---CCcceecc
Q 012314 162 TPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF---PELLPIGP 238 (466)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~---p~v~~VGp 238 (466)
.....+|+++.++..+++ .++............+.+..+...+++.+++||+.+||+.....+ ++++.|||
T Consensus 151 -----~~~~~~pg~p~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~VGP 224 (449)
T PLN02173 151 -----SLTLPIKDLPLLELQDLP-TFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTIGP 224 (449)
T ss_pred -----CccCCCCCCCCCChhhCC-hhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEEcc
Confidence 011236788878888887 444322222233444445556678899999999999998755554 46999999
Q ss_pred ccCCCC------CCCC-CCCcc--cCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 012314 239 LLASNR------LGNT-AGYFW--CEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDI 309 (466)
Q Consensus 239 l~~~~~------~~~~-~~~~~--~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 309 (466)
++.... .... ....+ ..+++|..|++.++++++|||||||....+.+++.+++.++ .+.+|+|++...
T Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~- 301 (449)
T PLN02173 225 TVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRAS- 301 (449)
T ss_pred cCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEecc-
Confidence 974210 0000 00111 22446999999998899999999999888999999999999 678899999753
Q ss_pred CCCCCCCCchhHHHHh-cCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhh
Q 012314 310 TTDANDRYPEGFQERV-AARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFW 388 (466)
Q Consensus 310 ~~~~~~~~~~~~~~~~-~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~ 388 (466)
....+|++++++. ++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.|
T Consensus 302 ---~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~ 378 (449)
T PLN02173 302 ---EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVW 378 (449)
T ss_pred ---chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHh
Confidence 1235788888777 588999999999999999999999999999999999999999999999999999999999867
Q ss_pred hceeEeecCCC-CCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012314 389 KVGLKFDRDEG-GIITREEIKNKVDQVLGNQ---DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 453 (466)
Q Consensus 389 G~G~~l~~~~~-~~~~~~~l~~~i~~ll~~~---~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 453 (466)
|+|+.+..++. ..++.++|.++|+++|.++ ++|+||++++++.++++++||+|.+++++||+++.
T Consensus 379 g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 379 KVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred CceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 99999865221 2479999999999999764 68999999999999999999999999999999874
No 7
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1e-63 Score=485.66 Aligned_cols=429 Identities=28% Similarity=0.504 Sum_probs=330.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHH--HHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHH
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQC--LAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK 80 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~--L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
+.||+++|++++||++|++.||++ |++||++|||++++.+...+.... .....+++..+|+++++... .+...
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~----~~~~~~~~~~~~~glp~~~~-~~~~~ 82 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE----KPRRPVDLVFFSDGLPKDDP-RAPET 82 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc----CCCCceEEEECCCCCCCCcc-cCHHH
Confidence 569999999999999999999999 569999999999998876553221 12346888888887776532 34445
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCC
Q 012314 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSH 160 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (466)
++..+.+.+.+.++++++. .++||||+|.+..|+..+|+++|||++.|+++.+..+..+.+++... ...+.
T Consensus 83 ~~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~--~~~~~- 153 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT--NSFPD- 153 (456)
T ss_pred HHHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc--CCCCc-
Confidence 6666666666667777665 57999999999999999999999999999998888887776643211 11110
Q ss_pred CCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhc---CCcceec
Q 012314 161 GTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF---PELLPIG 237 (466)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~---p~v~~VG 237 (466)
. ...+....+|+++.+...+++ .++.... ...+...+.+..+....++.+++||+.+||......+ +++++||
T Consensus 154 -~-~~~~~~~~~Pgl~~~~~~dl~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VG 229 (456)
T PLN02210 154 -L-EDLNQTVELPALPLLEVRDLP-SFMLPSG-GAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIG 229 (456)
T ss_pred -c-cccCCeeeCCCCCCCChhhCC-hhhhcCC-chHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEc
Confidence 0 000122457888878888877 4332221 1222233333334456789999999999998766653 5799999
Q ss_pred cccCCC----CCC-CCCC---CcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 012314 238 PLLASN----RLG-NTAG---YFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDI 309 (466)
Q Consensus 238 pl~~~~----~~~-~~~~---~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 309 (466)
|++... ... ...+ ..+..+.+|.+|++.++++++|||||||....+.+++++++.+++..+++|||+++...
T Consensus 230 Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~ 309 (456)
T PLN02210 230 PLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKE 309 (456)
T ss_pred ccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCc
Confidence 997421 110 0000 11344667899999988889999999999888999999999999999999999997531
Q ss_pred CCCCCCCCchhHHHHh-cCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhh
Q 012314 310 TTDANDRYPEGFQERV-AARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFW 388 (466)
Q Consensus 310 ~~~~~~~~~~~~~~~~-~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~ 388 (466)
....+..+.+.. ++++++++|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.||+++++.+
T Consensus 310 ----~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~ 385 (456)
T PLN02210 310 ----KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVF 385 (456)
T ss_pred ----cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHh
Confidence 111234455555 478888899999999999999999999999999999999999999999999999999999746
Q ss_pred hceeEeecCC-CCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012314 389 KVGLKFDRDE-GGIITREEIKNKVDQVLGNQ---DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 453 (466)
Q Consensus 389 G~G~~l~~~~-~~~~~~~~l~~~i~~ll~~~---~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 453 (466)
|+|+.+..++ ...++.++|+++|+++|.++ ++|+||+++++..+.++++||||.+++++||+++.
T Consensus 386 g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 386 GIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred CeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 9999996421 24689999999999999776 49999999999999999999999999999999875
No 8
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1e-63 Score=490.82 Aligned_cols=441 Identities=25% Similarity=0.446 Sum_probs=329.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcchHHHH--H-hhhcCCC-CCCCeEEEecCCCCCCCCCCc
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYNHKRVV--E-SLQGKNY-LGEQIHLVSIPDGMEPWEDRN 76 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rG--h~Vt~~~~~~~~~~~~--~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 76 (466)
|+||+++|++++||++||+.||+.|+.+| ..|||++++.+...+. . ...+... ...+++++.+|++.+......
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 81 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDP 81 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccch
Confidence 56899999999999999999999999998 8899999987654221 1 0110000 123599999997654221111
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhc----CCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhccccc
Q 012314 77 DLGKLIEKCLQVMPGKLEELIEEINS----REDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLI 152 (466)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 152 (466)
.... +...+.+.+++.++++.. ..+.+.+|||+|.+..|+..+|+++|||++.|+++.+.....+.+++...
T Consensus 82 ~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~ 157 (481)
T PLN02554 82 TFQS----YIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLY 157 (481)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhc
Confidence 2222 223344445555554421 11123489999999999999999999999999999999999888876532
Q ss_pred ccCccCCCCCCCccccccccCCCC-CCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhh--
Q 012314 153 DDGIIDSHGTPMSMQMFRIAPKMP-EMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTT-- 229 (466)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~-- 229 (466)
..+..+..+.+... ....+|+++ +++..+++ ..+.. ..+...+.+....+.+++.+++||+.+||......
T Consensus 158 ~~~~~~~~~~~~~~-~~v~iPgl~~pl~~~dlp-~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~ 231 (481)
T PLN02554 158 DEKKYDVSELEDSE-VELDVPSLTRPYPVKCLP-SVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFS 231 (481)
T ss_pred cccccCccccCCCC-ceeECCCCCCCCCHHHCC-CcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 21101100111111 223588874 67777777 33322 12334444555667889999999999999854432
Q ss_pred -----cCCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEE
Q 012314 230 -----FPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWV 304 (466)
Q Consensus 230 -----~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~ 304 (466)
.|+++.|||++....... ....+.+++|.+|+++++++++|||||||....+.+++++++.+++.++++|||+
T Consensus 232 ~~~~~~~~v~~vGpl~~~~~~~~--~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~ 309 (481)
T PLN02554 232 GSSGDLPPVYPVGPVLHLENSGD--DSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWS 309 (481)
T ss_pred hcccCCCCEEEeCCCcccccccc--ccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 368999999943222110 0001345679999999888899999999998889999999999999999999999
Q ss_pred EcCCCC----------CCCCCCCchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccc
Q 012314 305 VRPDIT----------TDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF 374 (466)
Q Consensus 305 ~~~~~~----------~~~~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~ 374 (466)
++.... ....+.+|++++++..+|+++++|+||.+||+|++|++|||||||||++||+++|||||++|++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~ 389 (481)
T PLN02554 310 LRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLY 389 (481)
T ss_pred EcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCcc
Confidence 975210 0011236889998899999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHH-HHHhhhceeEeecC--------CCCCcCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 012314 375 GDQFLNERY-ICDFWKVGLKFDRD--------EGGIITREEIKNKVDQVLG-NQDFKARALELKEKAMSSVREGGSSYKT 444 (466)
Q Consensus 375 ~DQ~~~a~r-v~~~~G~G~~l~~~--------~~~~~~~~~l~~~i~~ll~-~~~~r~~a~~~~~~~~~~~~~~g~~~~~ 444 (466)
+||+.||++ +++ +|+|+.+..+ +...++.++|.++|+++|. |++||+||+++++++++++++||++.++
T Consensus 390 ~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~ 468 (481)
T PLN02554 390 AEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTA 468 (481)
T ss_pred ccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 999999954 666 7999999621 1246899999999999996 7899999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 012314 445 FQNFLQWVKTNA 456 (466)
Q Consensus 445 ~~~~v~~~~~~~ 456 (466)
+++||+++..+.
T Consensus 469 l~~lv~~~~~~~ 480 (481)
T PLN02554 469 LKKFIQDVTKNI 480 (481)
T ss_pred HHHHHHHHHhhC
Confidence 999999998763
No 9
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.5e-63 Score=485.01 Aligned_cols=440 Identities=26% Similarity=0.477 Sum_probs=338.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC----CEEEEEeCCcchH----HHHHhhhcCCCCCCCeEEEecCCCCCCC
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHG----FRVTFVNTDYNHK----RVVESLQGKNYLGEQIHLVSIPDGMEPW 72 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rG----h~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (466)
|+|.||+++|++++||++||+.||+.|+.+| +.|||++++.+.. .+............+++++.+|++.++.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 8999999999999999999999999999986 7999999876422 3333221111111259999999764322
Q ss_pred CCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhccccc
Q 012314 73 EDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLI 152 (466)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 152 (466)
...+...++..+...+.+.++++++.+. .+++|||+|.+..|+..+|+++|||++.|+++.+.....+.+++...
T Consensus 81 -~~e~~~~~~~~~~~~~~~~l~~~L~~l~----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 81 -DAAGVEEFISRYIQLHAPHVRAAIAGLS----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred -ccccHHHHHHHHHHhhhHHHHHHHHhcC----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 1223445555566677788888887751 35799999999999999999999999999999999888888765432
Q ss_pred ccCccCCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhc--
Q 012314 153 DDGIIDSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-- 230 (466)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~-- 230 (466)
.. .+. ..+... ....+|+++.++..+++ .++..+. .....++....+...+++.+++||+.+||+.....+
T Consensus 156 ~~--~~~-~~~~~~-~~~~iPGlp~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 228 (480)
T PLN00164 156 EE--VAV-EFEEME-GAVDVPGLPPVPASSLP-APVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIAD 228 (480)
T ss_pred cc--ccC-cccccC-cceecCCCCCCChHHCC-chhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHh
Confidence 11 000 011111 12358999888888888 4333221 112233334445667899999999999998655433
Q ss_pred ---------CCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCE
Q 012314 231 ---------PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPF 301 (466)
Q Consensus 231 ---------p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 301 (466)
++++.|||++...... .....+++|.+|+++++++++|||||||....+.+++.+++.+++.++++|
T Consensus 229 ~~~~~~~~~~~v~~vGPl~~~~~~~----~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~f 304 (480)
T PLN00164 229 GRCTPGRPAPTVYPIGPVISLAFTP----PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRF 304 (480)
T ss_pred ccccccCCCCceEEeCCCccccccC----CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCE
Confidence 5799999998532111 112345679999999988899999999998889999999999999999999
Q ss_pred EEEEcCCCCC--------CCCCCCchhHHHHhcCCceee-cccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecc
Q 012314 302 LWVVRPDITT--------DANDRYPEGFQERVAARGQMI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWP 372 (466)
Q Consensus 302 i~~~~~~~~~--------~~~~~~~~~~~~~~~~n~~~~-~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P 372 (466)
||++...... +....+|+++.++..+.+.++ +|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 305 lWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P 384 (480)
T PLN00164 305 LWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWP 384 (480)
T ss_pred EEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCC
Confidence 9999853210 111237788888877777766 9999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHhhhceeEeecCC--CCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 012314 373 YFGDQFLNERYICDFWKVGLKFDRDE--GGIITREEIKNKVDQVLGNQ-----DFKARALELKEKAMSSVREGGSSYKTF 445 (466)
Q Consensus 373 ~~~DQ~~~a~rv~~~~G~G~~l~~~~--~~~~~~~~l~~~i~~ll~~~-----~~r~~a~~~~~~~~~~~~~~g~~~~~~ 445 (466)
+++||+.||+++++.+|+|+.+..++ .+.++.++|.++|+++|.++ .+|++|+++++++++++.+||+|.+++
T Consensus 385 ~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l 464 (480)
T PLN00164 385 LYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAAL 464 (480)
T ss_pred ccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999998865479999996421 13579999999999999653 589999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 012314 446 QNFLQWVKTNA 456 (466)
Q Consensus 446 ~~~v~~~~~~~ 456 (466)
++|++.+....
T Consensus 465 ~~~v~~~~~~~ 475 (480)
T PLN00164 465 QRLAREIRHGA 475 (480)
T ss_pred HHHHHHHHhcc
Confidence 99999998763
No 10
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.8e-63 Score=481.22 Aligned_cols=444 Identities=28% Similarity=0.453 Sum_probs=329.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCC----CCCCCCC-Cc
Q 012314 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD----GMEPWED-RN 76 (466)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~ 76 (466)
++.||+++|++++||++||+.||+.|+.+|+.|||++++.+...+..... ...+++++.+|. +++++.. ..
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~~lPdG~~~~~ 83 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHPSIPSGVENVK 83 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcCCCCCCCcChh
Confidence 36899999999999999999999999999999999999988877654321 113577766541 3333311 11
Q ss_pred c----HHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhccccc
Q 012314 77 D----LGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLI 152 (466)
Q Consensus 77 ~----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 152 (466)
+ ....+......+.+.+.++++++ . .+++|||+|.+.+|+..+|+.+|||++.|++++++.+..+++++...
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~---~-~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~ 159 (477)
T PLN02863 84 DLPPSGFPLMIHALGELYAPLLSWFRSH---P-SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM 159 (477)
T ss_pred hcchhhHHHHHHHHHHhHHHHHHHHHhC---C-CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc
Confidence 1 11122222234455555555542 1 46899999999999999999999999999999999999888765321
Q ss_pred ccCccCCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhc--
Q 012314 153 DDGIIDSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-- 230 (466)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~-- 230 (466)
+..... ......-.+..+|+++.++..+++ .++............+.+.......++.+++||+.+||+......
T Consensus 160 ~~~~~~--~~~~~~~~~~~iPg~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 160 PTKINP--DDQNEILSFSKIPNCPKYPWWQIS-SLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred cccccc--cccccccccCCCCCCCCcChHhCc-hhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 110000 000000012257888888888888 443321111223334444444456778899999999998766543
Q ss_pred ----CCcceeccccCCCCCC----CCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEE
Q 012314 231 ----PELLPIGPLLASNRLG----NTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFL 302 (466)
Q Consensus 231 ----p~v~~VGpl~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i 302 (466)
++++.|||++...... .........+++|..|++.++++++|||||||....+.+++.+++.+++.++++||
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~fl 316 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFI 316 (477)
T ss_pred hcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEE
Confidence 5799999997533210 00000111245799999999888999999999988899999999999999999999
Q ss_pred EEEcCCCC-CCCCCCCchhHHHHhcC-CceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhh
Q 012314 303 WVVRPDIT-TDANDRYPEGFQERVAA-RGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLN 380 (466)
Q Consensus 303 ~~~~~~~~-~~~~~~~~~~~~~~~~~-n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~ 380 (466)
|+++...+ ......+|+++.++..+ ++++.+|+||.+||+|++|++|||||||||++||+++|||+|++|+++||+.|
T Consensus 317 w~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 396 (477)
T PLN02863 317 WCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVN 396 (477)
T ss_pred EEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhh
Confidence 99975321 11123578888877654 45556999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Q 012314 381 ERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL-GNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNA 456 (466)
Q Consensus 381 a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll-~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~ 456 (466)
|+++++.+|+|+.+...+...++.+++.++|++++ ++++||+||+++++++++++++||+|.+++++||+.+...+
T Consensus 397 a~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 397 ASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred HHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhc
Confidence 99987557999999532123568999999999998 67899999999999999999999999999999999998764
No 11
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=7.3e-63 Score=477.73 Aligned_cols=428 Identities=26% Similarity=0.450 Sum_probs=330.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCC----CCCCCCCCcc
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD----GMEPWEDRND 77 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 77 (466)
+.||+++|++++||++|++.||+.|+ .+|++|||++++.+...+.+... ...+++++.+|. ++++.. .+
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~glp~~~--~~ 78 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDISGLVDPS--AH 78 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccccCCCCCC--cc
Confidence 67999999999999999999999998 78999999999987655533211 112588988884 333111 12
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCcc
Q 012314 78 LGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGII 157 (466)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 157 (466)
....+..+...+.+.++++++++. .+|+|||+|.+.+|+..+|+.+|||++.|+++.+.....+.+++........
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 154 (481)
T PLN02992 79 VVTKIGVIMREAVPTLRSKIAEMH----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKE 154 (481)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccc
Confidence 222333334455677788877642 4689999999999999999999999999999999887776665532111000
Q ss_pred CCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhc-------
Q 012314 158 DSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF------- 230 (466)
Q Consensus 158 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~------- 230 (466)
+ ... ......+|+++.++..+++ ..+..+. ......+.+......+++.+++||+.+||......+
T Consensus 155 ~---~~~-~~~~~~iPg~~~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~ 227 (481)
T PLN02992 155 E---HTV-QRKPLAMPGCEPVRFEDTL-DAYLVPD--EPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLG 227 (481)
T ss_pred c---ccc-CCCCcccCCCCccCHHHhh-HhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccc
Confidence 0 000 1113468998888888877 3222221 123444455556677899999999999998766542
Q ss_pred ----CCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEc
Q 012314 231 ----PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVR 306 (466)
Q Consensus 231 ----p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 306 (466)
++++.|||++...... ..+++|.+||+.++++++|||||||...++.+++++++.+|+.++++|||++.
T Consensus 228 ~~~~~~v~~VGPl~~~~~~~-------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r 300 (481)
T PLN02992 228 RVARVPVYPIGPLCRPIQSS-------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVR 300 (481)
T ss_pred cccCCceEEecCccCCcCCC-------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 4699999998643211 23556999999988889999999999999999999999999999999999996
Q ss_pred CCCCC---------------C-CCCCCchhHHHHhcCCcee-ecccchhhhhcCCCcccceeccCCchhhhhhhcCccee
Q 012314 307 PDITT---------------D-ANDRYPEGFQERVAARGQM-ISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFL 369 (466)
Q Consensus 307 ~~~~~---------------~-~~~~~~~~~~~~~~~n~~~-~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l 369 (466)
...+. . ..+.+|++|+++..++..+ .+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l 380 (481)
T PLN02992 301 PPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMI 380 (481)
T ss_pred CCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEE
Confidence 32110 0 0124788999888766655 59999999999999999999999999999999999999
Q ss_pred ecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHh--cCCCcHHH
Q 012314 370 CWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ---DFKARALELKEKAMSSVR--EGGSSYKT 444 (466)
Q Consensus 370 ~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~---~~r~~a~~~~~~~~~~~~--~~g~~~~~ 444 (466)
++|+++||+.||+++++.+|+|+.++.. ...++.++|+++|+++|.++ .+|+++++++++++++++ +||+|.++
T Consensus 381 ~~P~~~DQ~~na~~~~~~~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~ 459 (481)
T PLN02992 381 AWPLFAEQNMNAALLSDELGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHES 459 (481)
T ss_pred ecCccchhHHHHHHHHHHhCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 9999999999999996337999999631 13589999999999999763 899999999999999995 59999999
Q ss_pred HHHHHHHHHHh
Q 012314 445 FQNFLQWVKTN 455 (466)
Q Consensus 445 ~~~~v~~~~~~ 455 (466)
+++|++.+..-
T Consensus 460 l~~~v~~~~~~ 470 (481)
T PLN02992 460 LCRVTKECQRF 470 (481)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 12
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=4.1e-63 Score=477.25 Aligned_cols=431 Identities=25% Similarity=0.451 Sum_probs=324.0
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEE--EeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCC--C
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTF--VNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWE--D 74 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rG--h~Vt~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 74 (466)
|.+.||+++|++++||++||+.||+.|+.+| +.||+ +++..+...+...........++++++.+|++.+... .
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 8899999999999999999999999999998 55665 4444332222211111111123699999997653221 1
Q ss_pred C-ccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccc
Q 012314 75 R-NDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLID 153 (466)
Q Consensus 75 ~-~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 153 (466)
. .+....+..+...+.+.++++++++.. . .+++|||+|.+..|+..+|+++|||++.|+++++.....+.+++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~-~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSR-N-FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCC-C-CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 1 123333333445677778888887632 1 356999999999999999999999999999999999988887654211
Q ss_pred cCccCCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhc---
Q 012314 154 DGIIDSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF--- 230 (466)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~--- 230 (466)
. .+.... .......+|+++.++..+++ .++..+. .....++......+.+++.+++||+.+||+.....+
T Consensus 159 ~--~~~~~~--~~~~~v~iPg~p~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~ 231 (451)
T PLN03004 159 T--TPGKNL--KDIPTVHIPGVPPMKGSDMP-KAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEE 231 (451)
T ss_pred c--cccccc--ccCCeecCCCCCCCChHHCc-hhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhc
Confidence 1 000001 11123468999888888888 4443322 223444555555667889999999999998655432
Q ss_pred ---CCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcC
Q 012314 231 ---PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRP 307 (466)
Q Consensus 231 ---p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 307 (466)
++++.|||++........ . ...+.+|.+|+|+++++++|||||||...++.+++++++.+|+.++++|||++..
T Consensus 232 ~~~~~v~~vGPl~~~~~~~~~-~--~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~ 308 (451)
T PLN03004 232 LCFRNIYPIGPLIVNGRIEDR-N--DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRN 308 (451)
T ss_pred CCCCCEEEEeeeccCcccccc-c--cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 579999999853221100 1 1224569999999988899999999998899999999999999999999999985
Q ss_pred CCCCC----CCC-CCchhHHHHhcC-CceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhH
Q 012314 308 DITTD----AND-RYPEGFQERVAA-RGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNE 381 (466)
Q Consensus 308 ~~~~~----~~~-~~~~~~~~~~~~-n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a 381 (466)
....+ ... .+|++|+++..+ |+++.+|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.||
T Consensus 309 ~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na 388 (451)
T PLN03004 309 PPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNR 388 (451)
T ss_pred CccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhH
Confidence 31100 012 378899888764 555669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 012314 382 RYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYK 443 (466)
Q Consensus 382 ~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~ 443 (466)
+++++.+|+|+.++.++...++.++|+++|+++|.|++||+++++++++.+.++++||+|.+
T Consensus 389 ~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 389 VMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99985479999997421236799999999999999999999999999999999999999853
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3e-62 Score=470.55 Aligned_cols=433 Identities=26% Similarity=0.447 Sum_probs=331.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcchHHHH-Hh-hhcCCCCCCCeEEEecCCCCCCC--CCC
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYNHKRVV-ES-LQGKNYLGEQIHLVSIPDGMEPW--EDR 75 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~ 75 (466)
|.+.||+++|++++||++||+.||+.|+.+ |..|||+++..+...+. +. ...... ..+++++.+|....+. ...
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~-~~~i~~~~lp~~~~~~l~~~~ 79 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAA-RTTCQITEIPSVDVDNLVEPD 79 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccC-CCceEEEECCCCccccCCCCC
Confidence 889999999999999999999999999977 99999999886554331 11 111001 1259999998533211 101
Q ss_pred ccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCc-eEEeccchhHHHHHHhhccccccc
Q 012314 76 NDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVR-GAVFWPSSAASVALVFRIPKLIDD 154 (466)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~p~~~~~ 154 (466)
.+....+....+.+.+.++++++++. .+++|||+|.+.+|+..+|+++||| .++++++.++....+.++|....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~- 154 (470)
T PLN03015 80 ATIFTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT- 154 (470)
T ss_pred ccHHHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc-
Confidence 13333344444577888999998753 3679999999999999999999999 68888888888777777654211
Q ss_pred CccCCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhc----
Q 012314 155 GIIDSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF---- 230 (466)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~---- 230 (466)
..+.. ...... ...+|+++.++..+++ ..+..+. ... ...+....+...+++.+++||+.+||+.....+
T Consensus 155 -~~~~~-~~~~~~-~~~vPg~p~l~~~dlp-~~~~~~~-~~~-~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~ 228 (470)
T PLN03015 155 -VVEGE-YVDIKE-PLKIPGCKPVGPKELM-ETMLDRS-DQQ-YKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDM 228 (470)
T ss_pred -ccccc-cCCCCC-eeeCCCCCCCChHHCC-HhhcCCC-cHH-HHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhc
Confidence 11100 001011 2468999989999988 4332222 112 223334455678899999999999998655443
Q ss_pred -------CCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEE
Q 012314 231 -------PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLW 303 (466)
Q Consensus 231 -------p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 303 (466)
++++.|||++..... ...+++|.+|||.++++++|||||||....+.+++++++.+|+.++++|||
T Consensus 229 ~~~~~~~~~v~~VGPl~~~~~~-------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlW 301 (470)
T PLN03015 229 ELNRVMKVPVYPIGPIVRTNVH-------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVW 301 (470)
T ss_pred ccccccCCceEEecCCCCCccc-------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEE
Confidence 569999999853211 122347999999998899999999999999999999999999999999999
Q ss_pred EEcCCCC--------CC-CCCCCchhHHHHhcCCceee-cccchhhhhcCCCcccceeccCCchhhhhhhcCcceeeccc
Q 012314 304 VVRPDIT--------TD-ANDRYPEGFQERVAARGQMI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY 373 (466)
Q Consensus 304 ~~~~~~~--------~~-~~~~~~~~~~~~~~~n~~~~-~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~ 373 (466)
++..... .. ..+.+|+++.++..+.+.++ +|+||.++|+|+++++|||||||||++||+++|||||++|+
T Consensus 302 v~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~ 381 (470)
T PLN03015 302 VLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPL 381 (470)
T ss_pred EEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEeccc
Confidence 9963210 00 12357889998888777655 99999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhhhceeEeec-CCCCCcCHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 012314 374 FGDQFLNERYICDFWKVGLKFDR-DEGGIITREEIKNKVDQVLG-----NQDFKARALELKEKAMSSVREGGSSYKTFQN 447 (466)
Q Consensus 374 ~~DQ~~~a~rv~~~~G~G~~l~~-~~~~~~~~~~l~~~i~~ll~-----~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~ 447 (466)
++||+.||+++++.+|+|+.+.. .+...++.++|.++|+++|. ..++|+||++++++.++++++||+|.+++++
T Consensus 382 ~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~ 461 (470)
T PLN03015 382 YAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFE 461 (470)
T ss_pred ccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999655899999951 11246899999999999994 2489999999999999999999999999999
Q ss_pred HHHHH
Q 012314 448 FLQWV 452 (466)
Q Consensus 448 ~v~~~ 452 (466)
|+.++
T Consensus 462 ~~~~~ 466 (470)
T PLN03015 462 WAKRC 466 (470)
T ss_pred HHHhc
Confidence 99876
No 14
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.6e-62 Score=480.20 Aligned_cols=445 Identities=24% Similarity=0.410 Sum_probs=329.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCcchH-HHHHhhhcCCCCCCCeEEEecCCCCCCC--C-
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHG---FRVTFVNTDYNHK-RVVESLQGKNYLGEQIHLVSIPDGMEPW--E- 73 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rG---h~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 73 (466)
|++.||+++|++++||++||+.||+.|+.+| +.||++++..+.. .............++++|+.+|++..+. +
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 8899999999999999999999999999998 4577777543221 1111111101112369999999654221 1
Q ss_pred CCccHHHHHHHHHHhccHHHHHHHHHHhcC----CCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcc
Q 012314 74 DRNDLGKLIEKCLQVMPGKLEELIEEINSR----EDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIP 149 (466)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p 149 (466)
........+..+.+.+.+.+++.++++..+ +..+++|||+|.+.+|+..+|+++|||++.|+++++..+..+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 011222334444456666777777765321 1024699999999999999999999999999999998888877765
Q ss_pred cccccCccCCCCCCC-ccccccccCCC-CCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHH
Q 012314 150 KLIDDGIIDSHGTPM-SMQMFRIAPKM-PEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAF 227 (466)
Q Consensus 150 ~~~~~~~~~~~~~~~-~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~ 227 (466)
..... ... ..+. ..+....+|++ +.++..+++ .++..+. ....+....+...+++.+++||+.+||+...
T Consensus 161 ~~~~~--~~~-~~~~~~~~~~~~iPgl~~~l~~~dlp-~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~ 232 (475)
T PLN02167 161 ERHRK--TAS-EFDLSSGEEELPIPGFVNSVPTKVLP-PGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPNAF 232 (475)
T ss_pred Hhccc--ccc-ccccCCCCCeeECCCCCCCCChhhCc-hhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHHHH
Confidence 42111 000 0111 00122357888 457777776 3322211 1233444455667899999999999998755
Q ss_pred hh-------cCCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCC
Q 012314 228 TT-------FPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRP 300 (466)
Q Consensus 228 ~~-------~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 300 (466)
.. .|++++|||++........ ......+.+|.+|++.++++++|||||||....+.+++.+++.+++.++++
T Consensus 233 ~~l~~~~~~~p~v~~vGpl~~~~~~~~~-~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~ 311 (475)
T PLN02167 233 DYFSRLPENYPPVYPVGPILSLKDRTSP-NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCR 311 (475)
T ss_pred HHHHhhcccCCeeEEeccccccccccCC-CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCc
Confidence 53 2689999999864321100 000122357999999988889999999999888999999999999999999
Q ss_pred EEEEEcCCCC--CCCCCCCchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchh
Q 012314 301 FLWVVRPDIT--TDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQF 378 (466)
Q Consensus 301 ~i~~~~~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~ 378 (466)
|||+++.... ......+|+++.++..+++++++|+||.+||+|++|++|||||||||++||+++|||||++|+++||+
T Consensus 312 flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~ 391 (475)
T PLN02167 312 FLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQ 391 (475)
T ss_pred EEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccch
Confidence 9999975311 01123478899988888899999999999999999999999999999999999999999999999999
Q ss_pred hhHHH-HHHhhhceeEeecC---C-CCCcCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 012314 379 LNERY-ICDFWKVGLKFDRD---E-GGIITREEIKNKVDQVLGNQ-DFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 452 (466)
Q Consensus 379 ~~a~r-v~~~~G~G~~l~~~---~-~~~~~~~~l~~~i~~ll~~~-~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~ 452 (466)
.||++ +++ +|+|+.+... + ...++.++|+++|+++|.++ +||+||+++++++++++++||+|.+++++||+.+
T Consensus 392 ~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i 470 (475)
T PLN02167 392 LNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDL 470 (475)
T ss_pred hhHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99987 555 7999998641 0 13579999999999999755 8999999999999999999999999999999988
Q ss_pred HHh
Q 012314 453 KTN 455 (466)
Q Consensus 453 ~~~ 455 (466)
...
T Consensus 471 ~~~ 473 (475)
T PLN02167 471 LGD 473 (475)
T ss_pred Hhc
Confidence 764
No 15
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.7e-62 Score=476.93 Aligned_cols=430 Identities=27% Similarity=0.484 Sum_probs=332.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCC-CCccHH
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWE-DRNDLG 79 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (466)
+.||+++|++++||++|++.||++|+.| ||+|||++++.+...+.+.. ...+++|+.+|++.+... ...+..
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~~~gi~fv~lp~~~p~~~~~~~~~~ 84 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----KPDNIRFATIPNVIPSELVRAADFP 84 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----CCCCEEEEECCCCCCCccccccCHH
Confidence 5799999999999999999999999999 99999999998887776532 123699999997655442 223455
Q ss_pred HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCC
Q 012314 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDS 159 (466)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (466)
.++..+.+.+.+.++++++.+. .++||||+|.+..|+..+|+++|||++.++++++.....+.+++.....+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPV 160 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCC
Confidence 5666665567778888887753 368999999999999999999999999999999987777766553322111110
Q ss_pred CCCCC-ccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhh-----cCCc
Q 012314 160 HGTPM-SMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTT-----FPEL 233 (466)
Q Consensus 160 ~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~-----~p~v 233 (466)
. .+. .......+|+++.+...+++ .++... .....+.+........+++.+++||+.+||+..... .+++
T Consensus 161 ~-~~~~~~~~~~~iPg~~~l~~~dlp-~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~ 236 (459)
T PLN02448 161 E-LSESGEERVDYIPGLSSTRLSDLP-PIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPV 236 (459)
T ss_pred c-cccccCCccccCCCCCCCChHHCc-hhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCce
Confidence 0 000 11222357888877777777 443321 222233444445556778899999999999874443 2478
Q ss_pred ceeccccCCCCCC-CCCC-CcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 012314 234 LPIGPLLASNRLG-NTAG-YFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITT 311 (466)
Q Consensus 234 ~~VGpl~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 311 (466)
+.|||+....... .... ...+.+.++.+|++.++++++|||||||....+.+++++++.+|+.++++|||++...
T Consensus 237 ~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~--- 313 (459)
T PLN02448 237 YPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE--- 313 (459)
T ss_pred EEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc---
Confidence 9999997532110 0000 0011234788999998888999999999977888999999999999999999987633
Q ss_pred CCCCCCchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhce
Q 012314 312 DANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVG 391 (466)
Q Consensus 312 ~~~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G 391 (466)
..++.+..++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|
T Consensus 314 ------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G 387 (459)
T PLN02448 314 ------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIG 387 (459)
T ss_pred ------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCce
Confidence 12344445578989999999999999999999999999999999999999999999999999999999856999
Q ss_pred eEeecC--CCCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012314 392 LKFDRD--EGGIITREEIKNKVDQVLGNQ-----DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKT 454 (466)
Q Consensus 392 ~~l~~~--~~~~~~~~~l~~~i~~ll~~~-----~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~ 454 (466)
+.+... +...++.++|+++|+++|.++ ++|+||+++++++++++.+||+|.+++++||+++..
T Consensus 388 ~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 388 WRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred EEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 998631 124679999999999999753 799999999999999999999999999999998874
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=2.7e-61 Score=474.42 Aligned_cols=438 Identities=29% Similarity=0.503 Sum_probs=315.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCC----CCeEEEecC---CCCCCCCCC
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLG----EQIHLVSIP---DGMEPWEDR 75 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~ 75 (466)
+.||+++|++++||++|++.||++|+.|||+|||++++.+...+.+.+....... ..+.++.+| +++++....
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 5699999999999999999999999999999999999998877765543221111 144555555 345543111
Q ss_pred c---------cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHh
Q 012314 76 N---------DLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVF 146 (466)
Q Consensus 76 ~---------~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 146 (466)
. ....++..+... .+.+.+.++++-++ .++||||+|.+..|+..+|+++|||++.|++++++....+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFS-TKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred ccccccccccchHHHHHHHHHH-HHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 1 122333334322 22233333322211 57999999999999999999999999999998887766554
Q ss_pred hcccccccCccCCCCCCCccccccccCCCCC---CCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhcc
Q 012314 147 RIPKLIDDGIIDSHGTPMSMQMFRIAPKMPE---MNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELE 223 (466)
Q Consensus 147 ~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le 223 (466)
++....+... .+... ....+|+++. +...+++ . ......+..++....+...+++.+++||+++||
T Consensus 162 ~~~~~~~~~~-----~~~~~-~~~~~pg~p~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le 230 (482)
T PLN03007 162 CIRVHKPQKK-----VASSS-EPFVIPDLPGDIVITEEQIN-D----ADEESPMGKFMKEVRESEVKSFGVLVNSFYELE 230 (482)
T ss_pred HHHhcccccc-----cCCCC-ceeeCCCCCCccccCHHhcC-C----CCCchhHHHHHHHHHhhcccCCEEEEECHHHHH
Confidence 3321111000 11101 1123566652 2222333 1 111123444444555566788999999999999
Q ss_pred HHHHhhc-----CCcceeccccCCCCCC--CC--CCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHH
Q 012314 224 SEAFTTF-----PELLPIGPLLASNRLG--NT--AGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGL 294 (466)
Q Consensus 224 ~~~~~~~-----p~v~~VGpl~~~~~~~--~~--~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~ 294 (466)
....+.+ ..+++|||+....... .. ....+..+.+|.+|+++++++++|||||||....+.+++.+++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l 310 (482)
T PLN03007 231 SAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGL 310 (482)
T ss_pred HHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHH
Confidence 8756654 3689999986532210 00 0001112467899999988899999999999888889999999999
Q ss_pred HhCCCCEEEEEcCCCCC-CCCCCCchhHHHHhc-CCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecc
Q 012314 295 ELCKRPFLWVVRPDITT-DANDRYPEGFQERVA-ARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWP 372 (466)
Q Consensus 295 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~-~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P 372 (466)
+.++++|||+++..... .....+|+++.++.. .|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 311 ~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 311 EGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred HHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeecc
Confidence 99999999999864211 112357888887764 5666679999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHhhhceeEeecC-----CCCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcCCCcHHH
Q 012314 373 YFGDQFLNERYICDFWKVGLKFDRD-----EGGIITREEIKNKVDQVLGNQ---DFKARALELKEKAMSSVREGGSSYKT 444 (466)
Q Consensus 373 ~~~DQ~~~a~rv~~~~G~G~~l~~~-----~~~~~~~~~l~~~i~~ll~~~---~~r~~a~~~~~~~~~~~~~~g~~~~~ 444 (466)
+++||+.||+++++.+++|+.+... +.+.++.++|+++|+++|.++ +||+||+++++.+++++++||+|.++
T Consensus 391 ~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~ 470 (482)
T PLN03007 391 VGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFND 470 (482)
T ss_pred chhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999987545666665311 135689999999999999887 89999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 012314 445 FQNFLQWVKT 454 (466)
Q Consensus 445 ~~~~v~~~~~ 454 (466)
+++||+.+..
T Consensus 471 l~~~v~~~~~ 480 (482)
T PLN03007 471 LNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 17
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.6e-61 Score=465.61 Aligned_cols=434 Identities=28% Similarity=0.458 Sum_probs=322.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecC----CCCCCCCC-Ccc
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP----DGMEPWED-RND 77 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~ 77 (466)
+.||+++|++++||++||+.||+.|+.||+.|||++++.+...+..... .....++++.+| ++++++.. ..+
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~---~~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS---QLSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc---cCCCCeeEEECCCCccCCCCCCcccccc
Confidence 4699999999999999999999999999999999999987766543211 112358999988 56664421 122
Q ss_pred H----HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccc
Q 012314 78 L----GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLID 153 (466)
Q Consensus 78 ~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 153 (466)
. ..++....+.+.+.++++++. .+++|||+|.+..|+..+|+++|||++.++++++.....+.+......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLET------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHh------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 2 123444455667777777766 568999999999999999999999999999999887777654432222
Q ss_pred cCccCCCCCCCccccccccCCC----C--CCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHH
Q 012314 154 DGIIDSHGTPMSMQMFRIAPKM----P--EMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAF 227 (466)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~ 227 (466)
.+... ........+|++ + .++..+++ .++............+.+....+.+++.+++||+.+||+...
T Consensus 157 ~~~~~-----~~~~~~~~~p~~~P~~~~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l 230 (472)
T PLN02670 157 GGDLR-----STAEDFTVVPPWVPFESNIVFRYHEVT-KYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWF 230 (472)
T ss_pred cccCC-----CccccccCCCCcCCCCccccccHHHhh-HHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHH
Confidence 11111 001111113332 2 23445666 333221111111222334444567899999999999998766
Q ss_pred hhc-----CCcceeccccCCC-CCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCE
Q 012314 228 TTF-----PELLPIGPLLASN-RLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPF 301 (466)
Q Consensus 228 ~~~-----p~v~~VGpl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 301 (466)
... ++++.|||+.... ....+.....+..++|.+|+|+++++++|||||||....+.+++++++.+|+.++++|
T Consensus 231 ~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~F 310 (472)
T PLN02670 231 DLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPF 310 (472)
T ss_pred HHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCE
Confidence 543 5799999997531 1110000000112568999999988899999999999999999999999999999999
Q ss_pred EEEEcCCCC--CCCCCCCchhHHHHhcCCceee-cccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchh
Q 012314 302 LWVVRPDIT--TDANDRYPEGFQERVAARGQMI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQF 378 (466)
Q Consensus 302 i~~~~~~~~--~~~~~~~~~~~~~~~~~n~~~~-~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~ 378 (466)
||++..... ......+|+++.++..+++.++ +|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+
T Consensus 311 lWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~ 390 (472)
T PLN02670 311 FWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQG 390 (472)
T ss_pred EEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccH
Confidence 999985311 1112358899998887777765 9999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhceeEeecCC-CCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012314 379 LNERYICDFWKVGLKFDRDE-GGIITREEIKNKVDQVLGNQ---DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKT 454 (466)
Q Consensus 379 ~~a~rv~~~~G~G~~l~~~~-~~~~~~~~l~~~i~~ll~~~---~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~ 454 (466)
.||+++++ +|+|+.+...+ ...++.++|+++|+++|.++ +||+||+++++++++ .+...+.++.+++++..
T Consensus 391 ~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 391 LNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDELVHYLRE 465 (472)
T ss_pred HHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHHHHHHHH
Confidence 99999998 69999996421 23589999999999999776 799999999999997 67778899999998888
Q ss_pred hc
Q 012314 455 NA 456 (466)
Q Consensus 455 ~~ 456 (466)
+.
T Consensus 466 ~~ 467 (472)
T PLN02670 466 NR 467 (472)
T ss_pred hc
Confidence 75
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=9.5e-61 Score=458.84 Aligned_cols=421 Identities=27% Similarity=0.452 Sum_probs=317.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecC--CCCCCC-CCCccH-
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP--DGMEPW-EDRNDL- 78 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~- 78 (466)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... ........+.+..+| +++++. +...+.
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~ 82 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVPHVDGLPVGTETVSEIP 82 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECCCcCCCCCcccccccCC
Confidence 57999999999999999999999999999999999999876555431 100111237777777 566654 211111
Q ss_pred ---HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccC
Q 012314 79 ---GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDG 155 (466)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 155 (466)
...+....+.+.+.++++++. .++||||+|. ..|+..+|+++|||++.|+++++.....+.+ +. +
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~----~ 150 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRA------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG----G 150 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHh------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc----c
Confidence 112222233456777777776 5689999995 7899999999999999999999987777642 11 1
Q ss_pred ccCCCCCCCccccccccCCCCC----CCcccccccccCC-C-CchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhh
Q 012314 156 IIDSHGTPMSMQMFRIAPKMPE----MNSRDCFWAHIGD-W-TSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTT 229 (466)
Q Consensus 156 ~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~ 229 (466)
.. . ..+|++|. ++..+++ .+... . ........++.+..+....++.+++||+.+||+.....
T Consensus 151 ~~-----~------~~~pglp~~~v~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~ 218 (453)
T PLN02764 151 EL-----G------VPPPGYPSSKVLLRKQDAY-TMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDY 218 (453)
T ss_pred cC-----C------CCCCCCCCCcccCcHhhCc-chhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHH
Confidence 00 0 01255542 4444444 22111 1 11112334444443556788999999999999876654
Q ss_pred c-----CCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEE
Q 012314 230 F-----PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWV 304 (466)
Q Consensus 230 ~-----p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~ 304 (466)
. ++++.|||++...... ...+.+|.+|||.++++++|||||||....+.+++.+++.+|+..+.+|+|+
T Consensus 219 ~~~~~~~~v~~VGPL~~~~~~~------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv 292 (453)
T PLN02764 219 IEKHCRKKVLLTGPVFPEPDKT------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVA 292 (453)
T ss_pred HHhhcCCcEEEeccCccCcccc------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 4 5799999997643111 1234679999999999999999999998889999999999999999999999
Q ss_pred EcCCCCC-CCCCCCchhHHHHhcCCceee-cccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHH
Q 012314 305 VRPDITT-DANDRYPEGFQERVAARGQMI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNER 382 (466)
Q Consensus 305 ~~~~~~~-~~~~~~~~~~~~~~~~n~~~~-~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~ 382 (466)
+...... .....+|++|+++..+++.++ +|+||.+||+|++|++|||||||||++||+++|||+|++|+++||+.||+
T Consensus 293 ~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~ 372 (453)
T PLN02764 293 VKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTR 372 (453)
T ss_pred EeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHH
Confidence 9853110 112468999999887777666 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Q 012314 383 YICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ-----DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNAL 457 (466)
Q Consensus 383 rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~-----~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~ 457 (466)
++++.+|+|+.+..++...++.++|.++|+++|+++ ++|++++++++++++ +|+|.+++++||+++.....
T Consensus 373 ~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 373 LLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQDLVS 448 (453)
T ss_pred HHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhcc
Confidence 997546999988542113689999999999999763 499999999999975 89999999999999998854
Q ss_pred cC
Q 012314 458 AH 459 (466)
Q Consensus 458 ~~ 459 (466)
.+
T Consensus 449 ~~ 450 (453)
T PLN02764 449 GT 450 (453)
T ss_pred cc
Confidence 43
No 19
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.5e-60 Score=463.47 Aligned_cols=440 Identities=28% Similarity=0.516 Sum_probs=321.3
Q ss_pred CCC-CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecC-----CCCCCCCC
Q 012314 1 MSR-PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP-----DGMEPWED 74 (466)
Q Consensus 1 m~~-~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 74 (466)
|.+ .||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.............++++.+| +++++...
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 443 699999999999999999999999999999999999988766654332111111248999988 56665421
Q ss_pred -CccH--HHHHHHH---HHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhc
Q 012314 75 -RNDL--GKLIEKC---LQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRI 148 (466)
Q Consensus 75 -~~~~--~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 148 (466)
..+. ..+...+ ...+.+.++++++.. . .++||||+|.+..|+..+|+.+|||++.|++++++....+.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~-~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---K-PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---C-CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHH
Confidence 1111 1223222 234556667776642 1 5689999999999999999999999999999988877665432
Q ss_pred ccccccCccCCCCCCCccccccccCCCCC---CCcccccccccCCCCchhHHHHHHHHHHhh-hccccEEEEcChhhccH
Q 012314 149 PKLIDDGIIDSHGTPMSMQMFRIAPKMPE---MNSRDCFWAHIGDWTSQKIFFDLLERNTRA-MIAVNFHFCNSTYELES 224 (466)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vl~~s~~~le~ 224 (466)
....+.. . .+. ......+|+++. ++..+++ .++..... ...+ ...... ...++.+++||+.+||+
T Consensus 161 ~~~~~~~--~---~~~-~~~~~~iPg~p~~~~l~~~dlp-~~~~~~~~---~~~~-~~~~~~~~~~a~~vlvNTf~eLE~ 229 (491)
T PLN02534 161 RLHNAHL--S---VSS-DSEPFVVPGMPQSIEITRAQLP-GAFVSLPD---LDDV-RNKMREAESTAFGVVVNSFNELEH 229 (491)
T ss_pred HHhcccc--c---CCC-CCceeecCCCCccccccHHHCC-hhhcCccc---HHHH-HHHHHhhcccCCEEEEecHHHhhH
Confidence 2111110 0 111 112345777763 5666666 32221111 1222 222222 24577999999999998
Q ss_pred HHHhhc-----CCcceeccccCCCCCCCC---CCCccc-CCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHH
Q 012314 225 EAFTTF-----PELLPIGPLLASNRLGNT---AGYFWC-EDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLE 295 (466)
Q Consensus 225 ~~~~~~-----p~v~~VGpl~~~~~~~~~---~~~~~~-~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~ 295 (466)
.....+ ++++.|||++........ .+.... .+.+|..|||.++++++|||||||......+++.+++.+|+
T Consensus 230 ~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~ 309 (491)
T PLN02534 230 GCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLE 309 (491)
T ss_pred HHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 655432 579999999753211000 000111 23469999999988899999999998889999999999999
Q ss_pred hCCCCEEEEEcCCCCC-C-CCCCCchhHHHHhc-CCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecc
Q 012314 296 LCKRPFLWVVRPDITT-D-ANDRYPEGFQERVA-ARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWP 372 (466)
Q Consensus 296 ~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~~-~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P 372 (466)
.++.+|||++...... . ....+|++|.++.. .++++.+|+||..||.|+++++|||||||||++||+++|||+|++|
T Consensus 310 ~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P 389 (491)
T PLN02534 310 ASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWP 389 (491)
T ss_pred hCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecc
Confidence 9999999999843110 0 11135788887754 5555669999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHhhhceeEeecC------CC---C-CcCHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHhc
Q 012314 373 YFGDQFLNERYICDFWKVGLKFDRD------EG---G-IITREEIKNKVDQVLG-----NQDFKARALELKEKAMSSVRE 437 (466)
Q Consensus 373 ~~~DQ~~~a~rv~~~~G~G~~l~~~------~~---~-~~~~~~l~~~i~~ll~-----~~~~r~~a~~~~~~~~~~~~~ 437 (466)
+++||+.||+++++.||+|+.+..+ +. + .++.++|+++|+++|. ..++|+||+++++++++++.+
T Consensus 390 ~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~ 469 (491)
T PLN02534 390 LFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMEL 469 (491)
T ss_pred ccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998778999988421 01 1 4899999999999995 248999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHh
Q 012314 438 GGSSYKTFQNFLQWVKTN 455 (466)
Q Consensus 438 ~g~~~~~~~~~v~~~~~~ 455 (466)
||+|.+++++||+.+...
T Consensus 470 GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 470 GGSSHINLSILIQDVLKQ 487 (491)
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 999999999999998754
No 20
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-60 Score=460.85 Aligned_cols=413 Identities=26% Similarity=0.431 Sum_probs=305.5
Q ss_pred CCC-CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEec--C--CCCCCCCC-
Q 012314 1 MSR-PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSI--P--DGMEPWED- 74 (466)
Q Consensus 1 m~~-~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~- 74 (466)
|++ .||+++|+++.||++|++.||+.|+.+||+|||++++.+...+.+.+ ....++++..+ | ++++....
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCCccCCCCCccc
Confidence 554 59999999999999999999999999999999999987766665432 11224566554 3 45554422
Q ss_pred CccHHHHHHHH----HHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhccc
Q 012314 75 RNDLGKLIEKC----LQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPK 150 (466)
Q Consensus 75 ~~~~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 150 (466)
..+....+..+ .+...+.++++++. .++||||+| +..|+..+|+.+|||++.|+++++.... +.+++.
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~ 148 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG 148 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc
Confidence 21222222222 23344455555554 578999999 5789999999999999999999887654 444331
Q ss_pred ccccCccCCCCCCCccccccccCCCCC----CCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHH
Q 012314 151 LIDDGIIDSHGTPMSMQMFRIAPKMPE----MNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEA 226 (466)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~ 226 (466)
+... ..+|+++. ++..+++ .+ ......+..+.....+...+++.+++||+.+||+..
T Consensus 149 ----~~~~-----------~~~pglp~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~ 209 (442)
T PLN02208 149 ----GKLG-----------VPPPGYPSSKVLFRENDAH-AL---ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKF 209 (442)
T ss_pred ----cccC-----------CCCCCCCCcccccCHHHcC-cc---cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHH
Confidence 0000 01355553 3344444 22 111122222332333455789999999999999865
Q ss_pred Hhh-----cCCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCE
Q 012314 227 FTT-----FPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPF 301 (466)
Q Consensus 227 ~~~-----~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 301 (466)
... .|+++.|||++.+.... .+.+++|.+|+|.++++++|||||||...++.+++.+++.+++..+.++
T Consensus 210 ~~~~~~~~~~~v~~vGpl~~~~~~~------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf 283 (442)
T PLN02208 210 CDYISRQYHKKVLLTGPMFPEPDTS------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF 283 (442)
T ss_pred HHHHHhhcCCCEEEEeecccCcCCC------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE
Confidence 543 37899999998754311 1346789999999988899999999998889999999999888888888
Q ss_pred EEEEcCCCCC-CCCCCCchhHHHHhcC-CceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhh
Q 012314 302 LWVVRPDITT-DANDRYPEGFQERVAA-RGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFL 379 (466)
Q Consensus 302 i~~~~~~~~~-~~~~~~~~~~~~~~~~-n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~ 379 (466)
+|++..+.+. .....+|++|+++..+ |+.+.+|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.
T Consensus 284 ~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~ 363 (442)
T PLN02208 284 LIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVL 363 (442)
T ss_pred EEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHH
Confidence 8888743110 1124588899888764 5555599999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012314 380 NERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ-----DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKT 454 (466)
Q Consensus 380 ~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~-----~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~ 454 (466)
||+++++.+|+|+.+..++.+.++.++|.++|+++|+++ ++|++|+++++.+.+ +|+|.+++++||+.+.+
T Consensus 364 na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 364 FTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQE 439 (442)
T ss_pred HHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHH
Confidence 999877657999999642112489999999999999764 499999999999854 78999999999999865
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.7e-59 Score=450.52 Aligned_cols=414 Identities=27% Similarity=0.429 Sum_probs=303.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecC----CCCCCCC-CCcc
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP----DGMEPWE-DRND 77 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~ 77 (466)
+.||+++|++++||++||+.||+.|+.+|++|||++++.+...+.... ....++++..++ ++++... ...+
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~----~~~~~i~~~~i~lP~~dGLP~g~e~~~~ 79 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN----LFPDSIVFEPLTLPPVDGLPFGAETASD 79 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc----cCCCceEEEEecCCCcCCCCCccccccc
Confidence 569999999999999999999999999999999999988766554332 111247775543 5565542 1212
Q ss_pred HHHH-HHHHH---HhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccc
Q 012314 78 LGKL-IEKCL---QVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLID 153 (466)
Q Consensus 78 ~~~~-~~~~~---~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 153 (466)
.... ...+. ....+.++++++. .++||||+|. ..|+..+|+++|||++.|+++.+.....+.+... .
T Consensus 80 l~~~~~~~~~~a~~~l~~~l~~~L~~------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~--~ 150 (446)
T PLN00414 80 LPNSTKKPIFDAMDLLRDQIEAKVRA------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA--E 150 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh--h
Confidence 2111 11122 2233334444432 5789999995 7899999999999999999999988877665110 0
Q ss_pred cCccCCCCCCCccccccccCCCCC----CCcccccc-cccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHh
Q 012314 154 DGIIDSHGTPMSMQMFRIAPKMPE----MNSRDCFW-AHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFT 228 (466)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~ 228 (466)
.+ . .+|+++. +...+... .++. . ....+.+..+...+++.+++||+.+||+....
T Consensus 151 ~~------~--------~~pg~p~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 210 (446)
T PLN00414 151 LG------F--------PPPDYPLSKVALRGHDANVCSLFA-N-----SHELFGLITKGLKNCDVVSIRTCVELEGNLCD 210 (446)
T ss_pred cC------C--------CCCCCCCCcCcCchhhcccchhhc-c-----cHHHHHHHHHhhccCCEEEEechHHHHHHHHH
Confidence 00 0 1233332 11111110 1111 0 11233344455678999999999999987665
Q ss_pred hc-----CCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEE
Q 012314 229 TF-----PELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLW 303 (466)
Q Consensus 229 ~~-----p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 303 (466)
.+ ++++.|||+....... .....+++|.+|||+++++++|||||||......+++.+++.+++..+.+|+|
T Consensus 211 ~~~~~~~~~v~~VGPl~~~~~~~----~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flw 286 (446)
T PLN00414 211 FIERQCQRKVLLTGPMLPEPQNK----SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLI 286 (446)
T ss_pred HHHHhcCCCeEEEcccCCCcccc----cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 43 4689999997543211 00122356899999999999999999999999999999999999999999999
Q ss_pred EEcCCCCC-CCCCCCchhHHHHhcCCceee-cccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhH
Q 012314 304 VVRPDITT-DANDRYPEGFQERVAARGQMI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNE 381 (466)
Q Consensus 304 ~~~~~~~~-~~~~~~~~~~~~~~~~n~~~~-~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a 381 (466)
++...... .....+|++|+++..+++.++ +|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.||
T Consensus 287 vvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na 366 (446)
T PLN00414 287 AVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLIT 366 (446)
T ss_pred EEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHH
Confidence 99753111 112468999999998888876 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Q 012314 382 RYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ-----DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNA 456 (466)
Q Consensus 382 ~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~-----~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~ 456 (466)
+++++.+|+|+.+..++...++.++|+++|+++|.++ ++|++|+++++.+.+ +||++ ..+++||+.+....
T Consensus 367 ~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~~~~~~~ 442 (446)
T PLN00414 367 RLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVEALENEV 442 (446)
T ss_pred HHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHHHhc
Confidence 9997447999999642112589999999999999764 499999999999865 46634 33899999996654
Q ss_pred c
Q 012314 457 L 457 (466)
Q Consensus 457 ~ 457 (466)
.
T Consensus 443 ~ 443 (446)
T PLN00414 443 N 443 (446)
T ss_pred c
Confidence 3
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=6.3e-54 Score=422.59 Aligned_cols=418 Identities=16% Similarity=0.205 Sum_probs=294.6
Q ss_pred CEEEEE-cCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCC----CC---
Q 012314 4 PRVLVM-PAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWE----DR--- 75 (466)
Q Consensus 4 ~~il~~-~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--- 75 (466)
.||+.+ |.++.||+.-+.+|+++|++|||+||++++..... ... ....+++.+.++...+... ..
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YAS------HLCGNITEIDASLSVEYFKKLVKSSAVF 93 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-ccc------CCCCCEEEEEcCCChHHHHHHHhhhhHH
Confidence 467755 78899999999999999999999999998854211 100 0124566665541111000 00
Q ss_pred ---c---cH----HHHHHHHHHhccHHH--HHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHc-CCceEEeccchhHHH
Q 012314 76 ---N---DL----GKLIEKCLQVMPGKL--EELIEEINSREDEKIDCFIADGNIGWSMEIAKKM-NVRGAVFWPSSAASV 142 (466)
Q Consensus 76 ---~---~~----~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~l-giP~v~~~~~~~~~~ 142 (466)
. +. ......+...|...+ .++.+.|+... .+||++|+|.+..|+..+|+.+ ++|.|.++++.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~-~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~ 172 (507)
T PHA03392 94 RKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKN-NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE 172 (507)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC-CceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh
Confidence 0 00 011112222332222 12333343111 7899999999888999999999 999988877655433
Q ss_pred HHHhhcccccccCccCCC--CCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHH----HHhhhccccEEEE
Q 012314 143 ALVFRIPKLIDDGIIDSH--GTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLER----NTRAMIAVNFHFC 216 (466)
Q Consensus 143 ~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vl~ 216 (466)
..........+..+.+.. ++.+.|++.+++.++.......+.+..+. +..++...+.+.. ..+...+.+.+++
T Consensus 173 ~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~-~~~~~l~~~~f~~~~~~~~~l~~~~~l~lv 251 (507)
T PHA03392 173 NFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLA-DEQNKLLKQQFGPDTPTIRELRNRVQLLFV 251 (507)
T ss_pred HHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHcCCCCCCHHHHHhCCcEEEE
Confidence 222111111122222221 24466676766666532111111111111 2333333444322 1223367889999
Q ss_pred cChhhccHHHHhhcCCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEecccc---ccCHHHHHHHHHH
Q 012314 217 NSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFT---ILDQVQFQELALG 293 (466)
Q Consensus 217 ~s~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~---~~~~~~~~~~~~a 293 (466)
|+.+.+|++ ++++|++++|||++.++... .+.++++.+|++.++ +++|||||||.. ..+.+.++.+++|
T Consensus 252 ns~~~~d~~-rp~~p~v~~vGgi~~~~~~~------~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l~a 323 (507)
T PHA03392 252 NVHPVFDNN-RPVPPSVQYLGGLHLHKKPP------QPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLLRT 323 (507)
T ss_pred ecCccccCC-CCCCCCeeeecccccCCCCC------CCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHHHH
Confidence 999999998 89999999999998854221 357888999999864 479999999974 3578899999999
Q ss_pred HHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeeccc
Q 012314 294 LELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY 373 (466)
Q Consensus 294 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~ 373 (466)
++++++++||++++.. .+ ...++|+++++|+||.+||+|++|++||||||.||++||+++|||+|++|+
T Consensus 324 ~~~l~~~viw~~~~~~-------~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~ 392 (507)
T PHA03392 324 FKKLPYNVLWKYDGEV-------EA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPM 392 (507)
T ss_pred HHhCCCeEEEEECCCc-------Cc----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCC
Confidence 9999999999997541 11 124789999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012314 374 FGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 453 (466)
Q Consensus 374 ~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 453 (466)
++||+.||+|+++ +|+|+.++. ..++.++|.++|+++|+|++||+||+++++.+++. .-+..+....++|++.
T Consensus 393 ~~DQ~~Na~rv~~-~G~G~~l~~---~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~---p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 393 MGDQFYNTNKYVE-LGIGRALDT---VTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQ---PMTPLHKAIWYTEHVI 465 (507)
T ss_pred CccHHHHHHHHHH-cCcEEEecc---CCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 9999999999999 599999985 78999999999999999999999999999999983 4445677778888887
Q ss_pred Hhc
Q 012314 454 TNA 456 (466)
Q Consensus 454 ~~~ 456 (466)
+..
T Consensus 466 r~~ 468 (507)
T PHA03392 466 RNK 468 (507)
T ss_pred hCC
Confidence 765
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.9e-55 Score=442.05 Aligned_cols=413 Identities=23% Similarity=0.306 Sum_probs=235.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCC---ccH-HH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDR---NDL-GK 80 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~ 80 (466)
||+++|. ++||+.++..|+++|++|||+||++++.... .+... ...++++..++...+..+.. ... ..
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6888885 7899999999999999999999999985422 22211 12467777766544433211 100 00
Q ss_pred ----------HHHHH----------HHhccHHH--HHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccch
Q 012314 81 ----------LIEKC----------LQVMPGKL--EELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSS 138 (466)
Q Consensus 81 ----------~~~~~----------~~~~~~~~--~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~ 138 (466)
....+ ...|...+ .++++.+++ .++|++|+|.+.+|+..+|+.+++|.+.+.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~---~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~ 150 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS---EKFDLVISDAFDPCGLALAHYLGIPVIIISSST 150 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH---HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCC
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hccccceEeeccchhHHHHHHhcCCeEEEeccc
Confidence 11100 01111100 122223333 579999999998899999999999998765433
Q ss_pred hHHHHHHhhcccccccCccCCC--CCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHH---HHHhhhccccE
Q 012314 139 AASVALVFRIPKLIDDGIIDSH--GTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLE---RNTRAMIAVNF 213 (466)
Q Consensus 139 ~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 213 (466)
+.............+..+.+.. .+++.+++.+++.++.......+....+... .+....+.+. ...+.+.+.+.
T Consensus 151 ~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 229 (500)
T PF00201_consen 151 PMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSP-QDKLYKKYFGFPFSFRELLSNASL 229 (500)
T ss_dssp SCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS--TTS-EEESS-GGGCHHHHHHHHH
T ss_pred ccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhh-HHHHHhhhcccccccHHHHHHHHH
Confidence 2211110000001111111111 2334444444444432100000000000000 0000000000 01122356778
Q ss_pred EEEcChhhccHHHHhhcCCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEecccc-ccCHHHHHHHHH
Q 012314 214 HFCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFT-ILDQVQFQELAL 292 (466)
Q Consensus 214 vl~~s~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~ 292 (466)
+++|+.+.+++| +|..|++.+||+++.++.. +.++++.+|++...++++|||||||.. .++.+..+.+++
T Consensus 230 ~l~ns~~~ld~p-rp~~p~v~~vGgl~~~~~~--------~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~ 300 (500)
T PF00201_consen 230 VLINSHPSLDFP-RPLLPNVVEVGGLHIKPAK--------PLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAE 300 (500)
T ss_dssp CCSSTEEE-----HHHHCTSTTGCGC-S------------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHH
T ss_pred HhhhccccCcCC-cchhhcccccCcccccccc--------ccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHH
Confidence 999999999998 8999999999999887553 466788899998556789999999985 355566899999
Q ss_pred HHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecc
Q 012314 293 GLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWP 372 (466)
Q Consensus 293 a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P 372 (466)
++++++++|||++++. .++ .+++|+++++|+||.+||+||++++||||||+||+.||+++|||+|++|
T Consensus 301 ~~~~~~~~~iW~~~~~--------~~~----~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P 368 (500)
T PF00201_consen 301 AFENLPQRFIWKYEGE--------PPE----NLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIP 368 (500)
T ss_dssp HHHCSTTEEEEEETCS--------HGC----HHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-G
T ss_pred HHhhCCCccccccccc--------ccc----cccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCC
Confidence 9999999999999753 112 2478999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 012314 373 YFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 452 (466)
Q Consensus 373 ~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~ 452 (466)
+++||+.||+++++ .|+|+.++. ..+|.++|.++|+++|+|++|++||+++++.+++. .-+..+.+..++|++
T Consensus 369 ~~~DQ~~na~~~~~-~G~g~~l~~---~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~---p~~p~~~~~~~ie~v 441 (500)
T PF00201_consen 369 LFGDQPRNAARVEE-KGVGVVLDK---NDLTEEELRAAIREVLENPSYKENAKRLSSLFRDR---PISPLERAVWWIEYV 441 (500)
T ss_dssp CSTTHHHHHHHHHH-TTSEEEEGG---GC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT--------------------
T ss_pred CcccCCccceEEEE-EeeEEEEEe---cCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Confidence 99999999999999 599999985 78999999999999999999999999999999985 556677778888888
Q ss_pred HHhcc
Q 012314 453 KTNAL 457 (466)
Q Consensus 453 ~~~~~ 457 (466)
.+...
T Consensus 442 ~~~~~ 446 (500)
T PF00201_consen 442 ARHGG 446 (500)
T ss_dssp -----
T ss_pred HhcCC
Confidence 87643
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=7.1e-44 Score=347.07 Aligned_cols=362 Identities=21% Similarity=0.291 Sum_probs=256.7
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCC-----CccHHHHHHH
Q 012314 10 PAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWED-----RNDLGKLIEK 84 (466)
Q Consensus 10 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 84 (466)
.+|+.||++|+++||++|++|||+|+|++++.+.+.+.+. ++++..++...+.... ..+....++.
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPENTEEEPIDIIEK 72 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccccCcchHHHHHH
Confidence 5789999999999999999999999999999999888876 6888887754432110 0233444454
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCCCCC
Q 012314 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGTPM 164 (466)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 164 (466)
+.......+.++++.++. .+||+||+|.+.+++..+|+.+|||+|.+++++.... .++... .+.
T Consensus 73 ~~~~~~~~~~~l~~~~~~---~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~~---------~~~ 136 (392)
T TIGR01426 73 LLDEAEDVLPQLEEAYKG---DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEMV---------SPA 136 (392)
T ss_pred HHHHHHHHHHHHHHHhcC---CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cccccc---------ccc
Confidence 544444455555555544 7899999999888999999999999998865432110 000000 000
Q ss_pred ccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHH------Hhh--hccccEEEEcChhhccHHHHhhcCCccee
Q 012314 165 SMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERN------TRA--MIAVNFHFCNSTYELESEAFTTFPELLPI 236 (466)
Q Consensus 165 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~vl~~s~~~le~~~~~~~p~v~~V 236 (466)
........+... +.. .........+..+. ... ....+..+..+.+.|+++...++++++++
T Consensus 137 ~~~~~~~~~~~~----~~~-------~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 205 (392)
T TIGR01426 137 GEGSAEEGAIAE----RGL-------AEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFV 205 (392)
T ss_pred chhhhhhhcccc----chh-------HHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEE
Confidence 000000000000 000 00000011111100 011 12344567888888887656678899999
Q ss_pred ccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCC
Q 012314 237 GPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDR 316 (466)
Q Consensus 237 Gpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~ 316 (466)
||+....... ..|....+++++||+++||........++.+++++.+.+.+++|..+...+
T Consensus 206 Gp~~~~~~~~-------------~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~------ 266 (392)
T TIGR01426 206 GPCIGDRKED-------------GSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD------ 266 (392)
T ss_pred CCCCCCcccc-------------CCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC------
Confidence 9987654321 136655566889999999975556668899999999999999998875511
Q ss_pred CchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeec
Q 012314 317 YPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 396 (466)
Q Consensus 317 ~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~ 396 (466)
.+.+ ...++|+.+.+|+|+.++|.++++ +|||||+||++||+++|+|+|++|...||..||.++++ +|+|..+..
T Consensus 267 -~~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~ 341 (392)
T TIGR01426 267 -PADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPP 341 (392)
T ss_pred -hhHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEecc
Confidence 1111 124678889999999999987776 99999999999999999999999999999999999999 699999974
Q ss_pred CCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 012314 397 DEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSS 434 (466)
Q Consensus 397 ~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~ 434 (466)
..+++++|.++|+++|+|++|+++++++++.+++.
T Consensus 342 ---~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~ 376 (392)
T TIGR01426 342 ---EEVTAEKLREAVLAVLSDPRYAERLRKMRAEIREA 376 (392)
T ss_pred ---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999999873
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.4e-43 Score=346.70 Aligned_cols=364 Identities=15% Similarity=0.122 Sum_probs=250.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCC----------
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWE---------- 73 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 73 (466)
|||+|++.|+.||++|+++||++|++|||+|+|++++.+...+... ++++..+++..+...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 5899999999999999999999999999999999999888877764 688888775332210
Q ss_pred --CCccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccc
Q 012314 74 --DRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKL 151 (466)
Q Consensus 74 --~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 151 (466)
...........+.......++++++.++. .+||+||+|.+.+++..+|+++|||++.+++.+.......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~------ 142 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD---WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF------ 142 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC------
Confidence 01112223344444455666666666654 7899999999888999999999999999987654311100
Q ss_pred cccCccCCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhh---------ccccEEEEcChhhc
Q 012314 152 IDDGIIDSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAM---------IAVNFHFCNSTYEL 222 (466)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~vl~~s~~~l 222 (466)
.+ .. +. .....+......................+ ...+..++...+.+
T Consensus 143 ----------~~-----~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~ 200 (401)
T cd03784 143 ----------PP-----PL---GR----ANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAV 200 (401)
T ss_pred ----------CC-----cc---ch----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCccc
Confidence 00 00 00 00000000000000000111111111111 11233444444444
Q ss_pred cHHHHhhcCCcceec-cccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccc-cCHHHHHHHHHHHHhCCCC
Q 012314 223 ESEAFTTFPELLPIG-PLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTI-LDQVQFQELALGLELCKRP 300 (466)
Q Consensus 223 e~~~~~~~p~v~~VG-pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~ 300 (466)
.++..++.++..++| ++...+.. ...+.++..|++. ++++|||++||... ........+++++...+.+
T Consensus 201 ~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~ 271 (401)
T cd03784 201 LPPPPDWPRFDLVTGYGFRDVPYN-------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQR 271 (401)
T ss_pred CCCCCCccccCcEeCCCCCCCCCC-------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCe
Confidence 444356777888886 43333322 2345567788865 36799999999855 3456788899999999999
Q ss_pred EEEEEcCCCCCCCCCCCchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhh
Q 012314 301 FLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLN 380 (466)
Q Consensus 301 ~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~ 380 (466)
+||..+.... . . ...++|+++.+|+||.++|.++++ ||||||+||++||+++|||+|++|...||+.|
T Consensus 272 ~i~~~g~~~~----~---~---~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~ 339 (401)
T cd03784 272 AILSLGWGGL----G---A---EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFW 339 (401)
T ss_pred EEEEccCccc----c---c---cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHH
Confidence 9999876511 1 1 124689999999999999977666 99999999999999999999999999999999
Q ss_pred HHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 012314 381 ERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMS 433 (466)
Q Consensus 381 a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~ 433 (466)
|+++++ +|+|+.+.. ..++.++|.++|++++++ .++++++++++.+++
T Consensus 340 a~~~~~-~G~g~~l~~---~~~~~~~l~~al~~~l~~-~~~~~~~~~~~~~~~ 387 (401)
T cd03784 340 AARVAE-LGAGPALDP---RELTAERLAAALRRLLDP-PSRRRAAALLRRIRE 387 (401)
T ss_pred HHHHHH-CCCCCCCCc---ccCCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHh
Confidence 999999 699999975 568999999999999975 566777777777765
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3.7e-43 Score=353.22 Aligned_cols=429 Identities=29% Similarity=0.446 Sum_probs=277.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hhhcCC--CCCCCeEEEecCCCCCCCCCCc--c
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE-SLQGKN--YLGEQIHLVSIPDGMEPWEDRN--D 77 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~ 77 (466)
+.+++++++|+.||++|+..+|+.|+++||+||++++......... ...... .....+.+...+++++...... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 4678899999999999999999999999999999999866554322 100000 0001122222222222221111 1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcC-CceEEeccchhHHHHHHhhcccccccCc
Q 012314 78 LGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMN-VRGAVFWPSSAASVALVFRIPKLIDDGI 156 (466)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (466)
.......+...+...+++.+..+....+.++|++|+|.+..+...++.... +|...++...+.........+.. +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~----~ 160 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS----Y 160 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc----c
Confidence 111244555556666666555444332244999999998677777777765 88888887777655554332211 1
Q ss_pred cCCCCC--C-CccccccccCCCCCCCcccccccccCCCCchhHHHHHHHH-------HHhhhccccEEEEcChhhccHHH
Q 012314 157 IDSHGT--P-MSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLER-------NTRAMIAVNFHFCNSTYELESEA 226 (466)
Q Consensus 157 ~~~~~~--~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~vl~~s~~~le~~~ 226 (466)
.+.... . ..+....+.+++.......+.......+............ ..+.....+..++|+.+.++...
T Consensus 161 ~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~~ 240 (496)
T KOG1192|consen 161 VPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFEP 240 (496)
T ss_pred cCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCCCC
Confidence 110000 0 1122222222111000000000000000001111111111 11223566789999999988754
Q ss_pred HhhcCCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCC--eEEEEEecccc---ccCHHHHHHHHHHHHhC-CCC
Q 012314 227 FTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPS--SVVYVSFGSFT---ILDQVQFQELALGLELC-KRP 300 (466)
Q Consensus 227 ~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~v~vs~Gs~~---~~~~~~~~~~~~a~~~~-~~~ 300 (466)
++..+++++|||+....... +. ..+.+|++..+.. ++|||||||.. .++.++...++.+++++ ++.
T Consensus 241 ~~~~~~v~~IG~l~~~~~~~------~~--~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~ 312 (496)
T KOG1192|consen 241 RPLLPKVIPIGPLHVKDSKQ------KS--PLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVT 312 (496)
T ss_pred CCCCCCceEECcEEecCccc------cc--cccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCce
Confidence 77789999999999984432 11 1334566655443 79999999996 79999999999999999 788
Q ss_pred EEEEEcCCCCCCCCCCCchhHHHHhcCCceeecccchhhh-hcCCCcccceeccCCchhhhhhhcCcceeecccccchhh
Q 012314 301 FLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRV-LNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFL 379 (466)
Q Consensus 301 ~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p~~~l-l~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~ 379 (466)
|+|++.... ...+++++.++.+.|+...+|+||.++ |.|+++++||||||+||++|++++|||+|++|+++||+.
T Consensus 313 FiW~~~~~~----~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~ 388 (496)
T KOG1192|consen 313 FLWKYRPDD----SIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPL 388 (496)
T ss_pred EEEEecCCc----chhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchh
Confidence 999998651 111222222111457888899999997 699999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012314 380 NERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 455 (466)
Q Consensus 380 ~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~ 455 (466)
||+++++. |.|..+.. ..++.+.+.+++.+++.+++|+++++++++.+++. ..+. +....+++.....
T Consensus 389 Na~~i~~~-g~~~v~~~---~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~~---p~~~-~~~~~~~e~~~~~ 456 (496)
T KOG1192|consen 389 NARLLVRH-GGGGVLDK---RDLVSEELLEAIKEILENEEYKEAAKRLSEILRDQ---PISP-ELAVKWVEFVARH 456 (496)
T ss_pred HHHHHHhC-CCEEEEeh---hhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHcC---CCCH-HHHHHHHHHHHhc
Confidence 99999995 77777764 55666569999999999999999999999999973 5555 6666566665554
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-40 Score=320.09 Aligned_cols=392 Identities=19% Similarity=0.163 Sum_probs=250.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCC---CccHH
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWED---RNDLG 79 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 79 (466)
++||+|+..|..||++|+++|+++|.++||+|+|+|++.+.+.+.+. ++.|..++........ .....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhhhhcc
Confidence 57899999999999999999999999999999999999999999887 4667666643111111 11111
Q ss_pred H-HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHh-hcccccccCcc
Q 012314 80 K-LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVF-RIPKLIDDGII 157 (466)
Q Consensus 80 ~-~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-~~p~~~~~~~~ 157 (466)
+ +.. .........+++++.+.+ ..+|+++-|.... ...+++..++|++.............. +.+.....+..
T Consensus 72 ~~~~~-~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (406)
T COG1819 72 KSFRR-LLQQFKKLIRELLELLRE---LEPDLVVDDARLS-LGLAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKL 146 (406)
T ss_pred chhHH-HhhhhhhhhHHHHHHHHh---cchhhhhcchhhh-hhhhhhhcccchhhhhhhhccCCcccccCcccccccccc
Confidence 1 111 222233334455454544 7899999997444 448899999999886544332111111 00000000000
Q ss_pred CCCCCCCccccccccCCCCCCCcc-cccccccCCCCchhHHHH--HHH-HHHhhhccccEEEEcChhhccHHHHhhcCCc
Q 012314 158 DSHGTPMSMQMFRIAPKMPEMNSR-DCFWAHIGDWTSQKIFFD--LLE-RNTRAMIAVNFHFCNSTYELESEAFTTFPEL 233 (466)
Q Consensus 158 ~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~vl~~s~~~le~~~~~~~p~v 233 (466)
. ...-+++..... .....+............ ... ...+.+.......+...+...++....+...
T Consensus 147 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 215 (406)
T COG1819 147 P-----------IPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIG 215 (406)
T ss_pred c-----------ccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCc
Confidence 0 000000000000 000000000000000000 000 0011111111111111111111102234455
Q ss_pred ceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCC
Q 012314 234 LPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDA 313 (466)
Q Consensus 234 ~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~ 313 (466)
.++||+....... +..|. ..++++||+||||.... .++++.+.++++.++.++|+..++. +.
T Consensus 216 ~~~~~~~~~~~~~------------~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~-~~-- 277 (406)
T COG1819 216 PYIGPLLGEAANE------------LPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA-RD-- 277 (406)
T ss_pred Ccccccccccccc------------Ccchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc-cc--
Confidence 6677777665532 12332 24577999999998655 8899999999999999999988652 10
Q ss_pred CCCCchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeE
Q 012314 314 NDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLK 393 (466)
Q Consensus 314 ~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~ 393 (466)
-....++|+++++|+||.++|.++++ ||||||+||++|||++|||+|++|...||+.||.|+++ +|+|..
T Consensus 278 -------~~~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~ 347 (406)
T COG1819 278 -------TLVNVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIA 347 (406)
T ss_pred -------ccccCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCcee
Confidence 01124788889999999999977666 99999999999999999999999999999999999999 699999
Q ss_pred eecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012314 394 FDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 455 (466)
Q Consensus 394 l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~ 455 (466)
+.. +.++.+.|+++|.++|+|+.|+++++++++.++.. +| .+.+.+.++.....
T Consensus 348 l~~---~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~~ 401 (406)
T COG1819 348 LPF---EELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE---DG--PAKAADLLEEFARE 401 (406)
T ss_pred cCc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHhc
Confidence 985 78999999999999999999999999999999985 44 66677777765554
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=1e-25 Score=213.50 Aligned_cols=305 Identities=17% Similarity=0.206 Sum_probs=195.5
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCC-CCCCCCCccHHHH
Q 012314 4 PRVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDG-MEPWEDRNDLGKL 81 (466)
Q Consensus 4 ~~il~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (466)
|||+|...+ |.||+.++++||++| |||+|+|++.......+.. .+....++.- ....+...+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCceEeccCCccchHHH
Confidence 688888877 559999999999999 6999999999866554432 2334444321 1111111111111
Q ss_pred HHHH---HHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccC
Q 012314 82 IEKC---LQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIID 158 (466)
Q Consensus 82 ~~~~---~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (466)
.... .......++++++.++. .+||+||+|. .+.+..+|+..|||++.+........
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~---~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~---------------- 128 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLRE---FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH---------------- 128 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHh---cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc----------------
Confidence 1111 11223445555555555 8899999995 66678999999999999876554300
Q ss_pred CCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHh-h-hccccEEEEcChhhccHHHHhhcCCccee
Q 012314 159 SHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTR-A-MIAVNFHFCNSTYELESEAFTTFPELLPI 236 (466)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~vl~~s~~~le~~~~~~~p~v~~V 236 (466)
+.. .+. .......++.+... . ...++..+.-+++ .. .....++.++
T Consensus 129 --------------~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~---~~~~~~~~~~ 176 (318)
T PF13528_consen 129 --------------PNF------WLP--------WDQDFGRLIERYIDRYHFPPADRRLALSFY-PP---LPPFFRVPFV 176 (318)
T ss_pred --------------ccC------Ccc--------hhhhHHHHHHHhhhhccCCcccceecCCcc-cc---cccccccccc
Confidence 000 000 00111122222111 1 3444555544444 11 2223457788
Q ss_pred ccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCCC
Q 012314 237 GPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCK-RPFLWVVRPDITTDAND 315 (466)
Q Consensus 237 Gpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~ 315 (466)
||+..++... .. ..+++.|+|+||..... .+.++++..+ +++++. +..
T Consensus 177 ~p~~~~~~~~----------------~~-~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~------- 225 (318)
T PF13528_consen 177 GPIIRPEIRE----------------LP-PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN------- 225 (318)
T ss_pred Cchhcccccc----------------cC-CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC-------
Confidence 9888765432 00 12345899999975321 5566776666 566655 433
Q ss_pred CCchhHHHHhcCCceeeccc-c-hhhhhcCCCcccceeccCCchhhhhhhcCcceeeccc--ccchhhhHHHHHHhhhce
Q 012314 316 RYPEGFQERVAARGQMISWA-P-QLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY--FGDQFLNERYICDFWKVG 391 (466)
Q Consensus 316 ~~~~~~~~~~~~n~~~~~~~-p-~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~--~~DQ~~~a~rv~~~~G~G 391 (466)
. . +...+|+.+.+|. + ..++|..+++ +|||||.||++|++++|+|+|++|. ..||..||+++++ +|+|
T Consensus 226 -~-~---~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~ 297 (318)
T PF13528_consen 226 -A-A---DPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLG 297 (318)
T ss_pred -c-c---cccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCe
Confidence 0 0 0126788888876 3 4569966655 9999999999999999999999999 7899999999999 6999
Q ss_pred eEeecCCCCCcCHHHHHHHHHHH
Q 012314 392 LKFDRDEGGIITREEIKNKVDQV 414 (466)
Q Consensus 392 ~~l~~~~~~~~~~~~l~~~i~~l 414 (466)
..+.. .+++++.|+++|+++
T Consensus 298 ~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 298 IVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred EEccc---ccCCHHHHHHHHhcC
Confidence 99975 889999999999875
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.94 E-value=6.4e-25 Score=208.56 Aligned_cols=316 Identities=16% Similarity=0.182 Sum_probs=196.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH-HHHhhhcCCCCCCCeEEEecCC-CCCCCCCCccHHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKR-VVESLQGKNYLGEQIHLVSIPD-GMEPWEDRNDLGKLI 82 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 82 (466)
||++.+.++.||++|.++||++|.++||+|+|++.....+. +.. ..++.++.++. ++.. ...+. .+
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~--------~~g~~~~~~~~~~l~~---~~~~~-~~ 70 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIE--------KENIPYYSISSGKLRR---YFDLK-NI 70 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCc--------ccCCcEEEEeccCcCC---CchHH-HH
Confidence 58888888889999999999999999999999997654331 111 13577777652 2211 11111 12
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch--hHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCC
Q 012314 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSH 160 (466)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (466)
....+... .+.+.++.+++ .+||+||....+. .+..+|..+++|++..-....
T Consensus 71 ~~~~~~~~-~~~~~~~i~~~---~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~--------------------- 125 (352)
T PRK12446 71 KDPFLVMK-GVMDAYVRIRK---LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT--------------------- 125 (352)
T ss_pred HHHHHHHH-HHHHHHHHHHh---cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC---------------------
Confidence 22222211 22222333333 8999999987444 478899999999988432110
Q ss_pred CCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhc--CCcceecc
Q 012314 161 GTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF--PELLPIGP 238 (466)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~--p~v~~VGp 238 (466)
+++ ..+++ ...++.+++. +++ . ...+ .++.++|+
T Consensus 126 ------------~g~---------------------~nr~~------~~~a~~v~~~-f~~---~-~~~~~~~k~~~tG~ 161 (352)
T PRK12446 126 ------------PGL---------------------ANKIA------LRFASKIFVT-FEE---A-AKHLPKEKVIYTGS 161 (352)
T ss_pred ------------ccH---------------------HHHHH------HHhhCEEEEE-ccc---h-hhhCCCCCeEEECC
Confidence 100 01111 1233334333 221 1 2222 36788996
Q ss_pred ccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCC
Q 012314 239 LLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQ-VQFQELALGLELCKRPFLWVVRPDITTDANDRY 317 (466)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~ 317 (466)
-..+.... .......+.+.-.+++++|+|..||.+.... +.+..++..+. .+.+++|.++.+. +
T Consensus 162 Pvr~~~~~-------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~-------~ 226 (352)
T PRK12446 162 PVREEVLK-------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGN-------L 226 (352)
T ss_pred cCCccccc-------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCch-------H
Confidence 55543311 0111111222223457799999999865333 23444444442 2478888888551 1
Q ss_pred chhHHHHhcCCceeeccc-ch-hhhhcCCCcccceeccCCchhhhhhhcCcceeecccc-----cchhhhHHHHHHhhhc
Q 012314 318 PEGFQERVAARGQMISWA-PQ-LRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF-----GDQFLNERYICDFWKV 390 (466)
Q Consensus 318 ~~~~~~~~~~n~~~~~~~-p~-~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~-----~DQ~~~a~rv~~~~G~ 390 (466)
.+... . ..+..+..|+ +. .+++..+++ +|||||.+|++|++++|+|+|++|+. .+|..||.++++ .|+
T Consensus 227 ~~~~~-~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~ 301 (352)
T PRK12446 227 DDSLQ-N-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGY 301 (352)
T ss_pred HHHHh-h-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCC
Confidence 11111 1 1344566887 54 468988777 99999999999999999999999984 489999999999 599
Q ss_pred eeEeecCCCCCcCHHHHHHHHHHHhcCH-HHHHHH
Q 012314 391 GLKFDRDEGGIITREEIKNKVDQVLGNQ-DFKARA 424 (466)
Q Consensus 391 G~~l~~~~~~~~~~~~l~~~i~~ll~~~-~~r~~a 424 (466)
|..+.. ++++++.|.+++.++++|+ .+++++
T Consensus 302 ~~~l~~---~~~~~~~l~~~l~~ll~~~~~~~~~~ 333 (352)
T PRK12446 302 ASVLYE---EDVTVNSLIKHVEELSHNNEKYKTAL 333 (352)
T ss_pred EEEcch---hcCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 999974 7889999999999999886 444433
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=3.5e-23 Score=195.51 Aligned_cols=309 Identities=13% Similarity=0.117 Sum_probs=172.0
Q ss_pred EEEEEcCCCc-cCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeE-EEecCC-CCCCCCCCccHHHH
Q 012314 5 RVLVMPAPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIH-LVSIPD-GMEPWEDRNDLGKL 81 (466)
Q Consensus 5 ~il~~~~~~~-GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ 81 (466)
||++...+.. ||+.|.++|+++|.+ ||+|+|++.......+... ++. +...|. .+.......+....
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~~~~~~~~~~~~ 70 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKLKGEDGKVNIVKT 70 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceEeecCCcCcHHHH
Confidence 4677665544 999999999999999 9999999987744444433 222 222210 00000001111111
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCC
Q 012314 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHG 161 (466)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (466)
+..........+.+..+.+++ .+||+||+| +.+.+..+|+.+|||++.+..+... .
T Consensus 71 l~~~~~~~~~~~~~~~~~l~~---~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~------~-------------- 126 (321)
T TIGR00661 71 LRNKEYSPKKAIRREINIIRE---YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT------R-------------- 126 (321)
T ss_pred HHhhccccHHHHHHHHHHHHh---cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh------c--------------
Confidence 211001111234444444444 889999999 5777899999999999987653221 0
Q ss_pred CCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhcCCcc--eeccc
Q 012314 162 TPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELL--PIGPL 239 (466)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~p~v~--~VGpl 239 (466)
.|+. + +.......+.+. .....++..++..++... ...|... .-+|.
T Consensus 127 ----------~~~~------------~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~ 175 (321)
T TIGR00661 127 ----------YPLK------------T--DLIVYPTMAALR---IFNERCERFIVPDYPFPY----TICPKIIKNMEGPL 175 (321)
T ss_pred ----------CCcc------------c--chhHHHHHHHHH---HhccccceEeeecCCCCC----CCCccccccCCCcc
Confidence 0000 0 000000011111 111233333333322111 1111110 00111
Q ss_pred cCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCch
Q 012314 240 LASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPE 319 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 319 (466)
.. .....+... .++.|++.+|+.. .+.+++++.+.+. +.+++.+. +...+
T Consensus 176 ~~---------------~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~------~~~~~ 225 (321)
T TIGR00661 176 IR---------------YDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSY------EVAKN 225 (321)
T ss_pred cc---------------hhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCC------CCCcc
Confidence 11 011122221 2457788788742 2455677766653 23333222 11111
Q ss_pred hHHHHhcCCceeecccc--hhhhhcCCCcccceeccCCchhhhhhhcCcceeeccccc--chhhhHHHHHHhhhceeEee
Q 012314 320 GFQERVAARGQMISWAP--QLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFG--DQFLNERYICDFWKVGLKFD 395 (466)
Q Consensus 320 ~~~~~~~~n~~~~~~~p--~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~--DQ~~~a~rv~~~~G~G~~l~ 395 (466)
..++|+.+.+|.| ..++|..+++ +|||||++|++|++++|+|+|++|... ||..||+.+++ .|+|+.+.
T Consensus 226 ----~~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~ 298 (321)
T TIGR00661 226 ----SYNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALE 298 (321)
T ss_pred ----ccCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcC
Confidence 2357888889997 3457755555 999999999999999999999999854 99999999999 59999996
Q ss_pred cCCCCCcCHHHHHHHHHHHhcCHHHH
Q 012314 396 RDEGGIITREEIKNKVDQVLGNQDFK 421 (466)
Q Consensus 396 ~~~~~~~~~~~l~~~i~~ll~~~~~r 421 (466)
. .++ ++.+++.++++|+.|+
T Consensus 299 ~---~~~---~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 299 Y---KEL---RLLEAILDIRNMKRYK 318 (321)
T ss_pred h---hhH---HHHHHHHhcccccccc
Confidence 4 333 6677777777777654
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=4.9e-21 Score=179.57 Aligned_cols=323 Identities=16% Similarity=0.164 Sum_probs=198.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeCCc-chHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCC-ccHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGF-RVTFVNTDY-NHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDR-NDLGK 80 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh-~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (466)
++|++...++.||+.|.++++++|.++|+ +|.++.+.. .+..+.+. .++.++.++.+-...... .....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~--------~~~~~~~I~~~~~~~~~~~~~~~~ 72 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQ--------YGIEFELIPSGGLRRKGSLKLLKA 72 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccc--------cCceEEEEecccccccCcHHHHHH
Confidence 36788888888999999999999999999 688885544 33333332 367888877543333211 11211
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch--hHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccC
Q 012314 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIID 158 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (466)
.+..+. .....++++++ .+||+||....+. .+..+|..+|||.+..-..
T Consensus 73 ~~~~~~--~~~~a~~il~~------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn--------------------- 123 (357)
T COG0707 73 PFKLLK--GVLQARKILKK------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN--------------------- 123 (357)
T ss_pred HHHHHH--HHHHHHHHHHH------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecC---------------------
Confidence 222221 23345566666 8999999966544 6778899999999983211
Q ss_pred CCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhcCCcceec-
Q 012314 159 SHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIG- 237 (466)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~p~v~~VG- 237 (466)
.++|.. .+++. ..++.+...... .+. ..-..++..+|
T Consensus 124 ------------~~~G~a---------------------nk~~~------~~a~~V~~~f~~-~~~--~~~~~~~~~tG~ 161 (357)
T COG0707 124 ------------AVPGLA---------------------NKILS------KFAKKVASAFPK-LEA--GVKPENVVVTGI 161 (357)
T ss_pred ------------CCcchh---------------------HHHhH------Hhhceeeecccc-ccc--cCCCCceEEecC
Confidence 111111 11110 122222222221 110 11112577777
Q ss_pred cccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCC
Q 012314 238 PLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQ-VQFQELALGLELCKRPFLWVVRPDITTDANDR 316 (466)
Q Consensus 238 pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~ 316 (466)
|+..+-... +..-..+.. ..++++|+|.-||.+.... +.+......+.+ ...+++.++.+ .
T Consensus 162 Pvr~~~~~~---------~~~~~~~~~-~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~-------~ 223 (357)
T COG0707 162 PVRPEFEEL---------PAAEVRKDG-RLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKN-------D 223 (357)
T ss_pred cccHHhhcc---------chhhhhhhc-cCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcc-------h
Confidence 555432210 000001111 1156799999998753221 122222222222 45677777655 1
Q ss_pred CchhHHHHh-cCC-ceeecccchhh-hhcCCCcccceeccCCchhhhhhhcCcceeecccc----cchhhhHHHHHHhhh
Q 012314 317 YPEGFQERV-AAR-GQMISWAPQLR-VLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF----GDQFLNERYICDFWK 389 (466)
Q Consensus 317 ~~~~~~~~~-~~n-~~~~~~~p~~~-ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~----~DQ~~~a~rv~~~~G 389 (466)
.+.+.... ..+ +.+..|++.+. ++.-+++ +||++|++|+.|+++.|+|+|.+|.- .+|..||..++++ |
T Consensus 224 -~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-g 299 (357)
T COG0707 224 -LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-G 299 (357)
T ss_pred -HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-C
Confidence 22222222 233 66779998764 8977776 99999999999999999999999973 4899999999995 9
Q ss_pred ceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 012314 390 VGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMS 433 (466)
Q Consensus 390 ~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~ 433 (466)
.|..+.. .++|.++|.+.|.+++++ .++..+|++..++
T Consensus 300 aa~~i~~---~~lt~~~l~~~i~~l~~~---~~~l~~m~~~a~~ 337 (357)
T COG0707 300 AALVIRQ---SELTPEKLAELILRLLSN---PEKLKAMAENAKK 337 (357)
T ss_pred CEEEecc---ccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHh
Confidence 9999984 779999999999999987 4445555555554
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=5.9e-20 Score=176.98 Aligned_cols=326 Identities=15% Similarity=0.144 Sum_probs=190.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
+||+|...+..||...++.++++|.++||+|++++........ . ....+++++.++..-... ......+.
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~-~------~~~~g~~~~~~~~~~~~~---~~~~~~l~ 71 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEAR-L------VPKAGIEFHFIPSGGLRR---KGSLANLK 71 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhh-c------cccCCCcEEEEeccCcCC---CChHHHHH
Confidence 7899999888899999999999999999999999986521110 0 001256666655311111 11111111
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCc--hhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCC
Q 012314 84 KCLQVMPGKLEELIEEINSREDEKIDCFIADGNI--GWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHG 161 (466)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (466)
.... ....+..+.+.+++ .+||+|++.... ..+..++...++|++.......
T Consensus 72 ~~~~-~~~~~~~~~~~ik~---~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---------------------- 125 (357)
T PRK00726 72 APFK-LLKGVLQARKILKR---FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV---------------------- 125 (357)
T ss_pred HHHH-HHHHHHHHHHHHHh---cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC----------------------
Confidence 1111 12223333333333 789999999632 2455667788999986321000
Q ss_pred CCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhcCCcceeccccC
Q 012314 162 TPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLA 241 (466)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~p~v~~VGpl~~ 241 (466)
+ . ...++.. ..+|.++..+...+. ..-..+++++|....
T Consensus 126 -----------~------------~---------~~~r~~~------~~~d~ii~~~~~~~~---~~~~~~i~vi~n~v~ 164 (357)
T PRK00726 126 -----------P------------G---------LANKLLA------RFAKKVATAFPGAFP---EFFKPKAVVTGNPVR 164 (357)
T ss_pred -----------c------------c---------HHHHHHH------HHhchheECchhhhh---ccCCCCEEEECCCCC
Confidence 0 0 0011111 134444444432221 112357777774443
Q ss_pred CCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCC--CEEEEEcCCCCCCCCCCCch
Q 012314 242 SNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKR--PFLWVVRPDITTDANDRYPE 319 (466)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~--~~i~~~~~~~~~~~~~~~~~ 319 (466)
..... .... ..-....++.++|++..|+.. .......+.+++.++.. .+++.++.. . .+
T Consensus 165 ~~~~~------~~~~---~~~~~~~~~~~~i~~~gg~~~--~~~~~~~l~~a~~~~~~~~~~~~~~G~g----~----~~ 225 (357)
T PRK00726 165 EEILA------LAAP---PARLAGREGKPTLLVVGGSQG--ARVLNEAVPEALALLPEALQVIHQTGKG----D----LE 225 (357)
T ss_pred hHhhc------ccch---hhhccCCCCCeEEEEECCcHh--HHHHHHHHHHHHHHhhhCcEEEEEcCCC----c----HH
Confidence 32211 0000 001111223446666444431 12222333366654443 345555654 1 12
Q ss_pred hHHHH--hcCCceeecccc-hhhhhcCCCcccceeccCCchhhhhhhcCcceeeccc----ccchhhhHHHHHHhhhcee
Q 012314 320 GFQER--VAARGQMISWAP-QLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY----FGDQFLNERYICDFWKVGL 392 (466)
Q Consensus 320 ~~~~~--~~~n~~~~~~~p-~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~----~~DQ~~~a~rv~~~~G~G~ 392 (466)
.+.+. ..-++.+.+|+. ..+++..+++ +|+|+|.++++||+++|+|+|++|. ..||..++..+.+ .|.|.
T Consensus 226 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~ 302 (357)
T PRK00726 226 EVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD-AGAAL 302 (357)
T ss_pred HHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH-CCCEE
Confidence 22222 222366779984 4679977666 9999999999999999999999997 4689999999999 59999
Q ss_pred EeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 012314 393 KFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKA 431 (466)
Q Consensus 393 ~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~ 431 (466)
.+.. +.++++.|+++|.++++|+++++++.+-+++.
T Consensus 303 ~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (357)
T PRK00726 303 LIPQ---SDLTPEKLAEKLLELLSDPERLEAMAEAARAL 338 (357)
T ss_pred EEEc---ccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 9975 56789999999999999988887666655444
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.84 E-value=7.3e-19 Score=169.10 Aligned_cols=321 Identities=15% Similarity=0.127 Sum_probs=188.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCC-CCCCCCCccHHHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDG-MEPWEDRNDLGKLIE 83 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (466)
+|++.+.+..||......+++.|.++||+|++++....... ... ...+++++.++.. .............+.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RLV------PKAGIPLHTIPVGGLRRKGSLKKLKAPFK 73 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hcc------cccCCceEEEEecCcCCCChHHHHHHHHH
Confidence 57888888889999999999999999999999988643211 100 0124666666532 111111111111111
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEeCCC--chhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCC
Q 012314 84 KCLQVMPGKLEELIEEINSREDEKIDCFIADGN--IGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHG 161 (466)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (466)
. .. ....+.+++++ .+||+|++... ...+..+|...|+|++......
T Consensus 74 ~-~~-~~~~~~~~i~~------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~----------------------- 122 (350)
T cd03785 74 L-LK-GVLQARKILKK------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA----------------------- 122 (350)
T ss_pred H-HH-HHHHHHHHHHh------cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-----------------------
Confidence 1 11 11234444444 78999998753 2356677888899988632100
Q ss_pred CCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhcCCcceeccccC
Q 012314 162 TPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLLA 241 (466)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~p~v~~VGpl~~ 241 (466)
.+ . ...++. ...++.+++.+....+. -...++.++|....
T Consensus 123 ----------~~------------~---------~~~~~~------~~~~~~vi~~s~~~~~~---~~~~~~~~i~n~v~ 162 (350)
T cd03785 123 ----------VP------------G---------LANRLL------ARFADRVALSFPETAKY---FPKDKAVVTGNPVR 162 (350)
T ss_pred ----------Cc------------c---------HHHHHH------HHhhCEEEEcchhhhhc---CCCCcEEEECCCCc
Confidence 00 0 001111 12366777766554332 11246677775443
Q ss_pred CCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHh---CCCCEEEEEcCCCCCCCCCCCc
Q 012314 242 SNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLEL---CKRPFLWVVRPDITTDANDRYP 318 (466)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~~~ 318 (466)
..... +.+ . .......+++.+|++..|+... ......+.+++.. .+..+++.++.+ ..
T Consensus 163 ~~~~~-------~~~-~-~~~~~~~~~~~~i~~~~g~~~~--~~~~~~l~~a~~~l~~~~~~~~~i~G~g--------~~ 223 (350)
T cd03785 163 EEILA-------LDR-E-RARLGLRPGKPTLLVFGGSQGA--RAINEAVPEALAELLRKRLQVIHQTGKG--------DL 223 (350)
T ss_pred hHHhh-------hhh-h-HHhcCCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhccCeEEEEEcCCc--------cH
Confidence 22110 000 0 1222222334466665555421 1222223344333 334455566544 11
Q ss_pred hhHHHHh---cCCceeeccc-chhhhhcCCCcccceeccCCchhhhhhhcCcceeeccc----ccchhhhHHHHHHhhhc
Q 012314 319 EGFQERV---AARGQMISWA-PQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY----FGDQFLNERYICDFWKV 390 (466)
Q Consensus 319 ~~~~~~~---~~n~~~~~~~-p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~----~~DQ~~~a~rv~~~~G~ 390 (466)
+.+.+.. .+|+.+.+|+ +..++|..+++ +|+++|.+++.||+++|+|+|++|. ..+|..++..+.+ .|.
T Consensus 224 ~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~-~g~ 300 (350)
T cd03785 224 EEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK-AGA 300 (350)
T ss_pred HHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh-CCC
Confidence 2232222 3688888998 44579977666 9999999999999999999999986 4678999999998 599
Q ss_pred eeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 012314 391 GLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELK 428 (466)
Q Consensus 391 G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~ 428 (466)
|..+.. ...+.++|.++|.++++|++.++++.+-+
T Consensus 301 g~~v~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (350)
T cd03785 301 AVLIPQ---EELTPERLAAALLELLSDPERLKAMAEAA 335 (350)
T ss_pred EEEEec---CCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999974 45689999999999999887766554433
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.84 E-value=6.2e-19 Score=156.96 Aligned_cols=325 Identities=15% Similarity=0.120 Sum_probs=205.6
Q ss_pred CCEEEEEcCC--CccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCC---CC
Q 012314 3 RPRVLVMPAP--AQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWE---DR 75 (466)
Q Consensus 3 ~~~il~~~~~--~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 75 (466)
.+||+|++.- |-||+.+++.||++|++. |.+|++++.......+.- ..+++++.+|.-...++ ..
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LPsl~k~~~G~~~~ 80 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLPSLIKGDNGEYGL 80 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecCceEecCCCceee
Confidence 4599999955 569999999999999998 999999999866554432 35899999995333221 01
Q ss_pred ccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHH-----HHHH--HcCCceEEeccchhHHHHHHhhc
Q 012314 76 NDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSM-----EIAK--KMNVRGAVFWPSSAASVALVFRI 148 (466)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~-----~~A~--~lgiP~v~~~~~~~~~~~~~~~~ 148 (466)
.+...-.+.+.+.-...+.+..+. .+||++|+|.+.+... .++. ..+-+++...
T Consensus 81 ~d~~~~l~e~~~~Rs~lil~t~~~------fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~l------------- 141 (400)
T COG4671 81 VDLDGDLEETKKLRSQLILSTAET------FKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGL------------- 141 (400)
T ss_pred eecCCCHHHHHHHHHHHHHHHHHh------cCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeeh-------------
Confidence 111111334433333344445555 8999999998544310 1111 1111111100
Q ss_pred ccccccCccCCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHh
Q 012314 149 PKLIDDGIIDSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFT 228 (466)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~ 228 (466)
-..++.+ .........+.....+. ...|.+++...|.|-.+...
T Consensus 142 -----------------------------r~i~D~p-~~~~~~w~~~~~~~~I~------r~yD~V~v~GdP~f~d~~~~ 185 (400)
T COG4671 142 -----------------------------RSIRDIP-QELEADWRRAETVRLIN------RFYDLVLVYGDPDFYDPLTE 185 (400)
T ss_pred -----------------------------Hhhhhch-hhhccchhhhHHHHHHH------HhheEEEEecCccccChhhc
Confidence 0011222 11222222222222222 35578888888876543222
Q ss_pred h------cCCcceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHh-CCCC-
Q 012314 229 T------FPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLEL-CKRP- 300 (466)
Q Consensus 229 ~------~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~-~~~~- 300 (466)
+ -..+.|+|.+ ..+-+.. +.+ |... +++.-|+||-|. +....+++...+.|-.. .+.+
T Consensus 186 ~~~~~~i~~k~~ytG~v-q~~~~~~------~~p-----~~~~-pE~~~Ilvs~GG-G~dG~eLi~~~l~A~~~l~~l~~ 251 (400)
T COG4671 186 FPFAPAIRAKMRYTGFV-QRSLPHL------PLP-----PHEA-PEGFDILVSVGG-GADGAELIETALAAAQLLAGLNH 251 (400)
T ss_pred CCccHhhhhheeEeEEe-eccCcCC------CCC-----CcCC-CccceEEEecCC-ChhhHHHHHHHHHHhhhCCCCCc
Confidence 1 2488999998 2221110 011 1111 345589999986 44556777777777543 3444
Q ss_pred -EEEEEcCCCCCCCCCCCchhHHH----Hhc--CCceeecccchh-hhhcCCCcccceeccCCchhhhhhhcCcceeecc
Q 012314 301 -FLWVVRPDITTDANDRYPEGFQE----RVA--ARGQMISWAPQL-RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWP 372 (466)
Q Consensus 301 -~i~~~~~~~~~~~~~~~~~~~~~----~~~--~n~~~~~~~p~~-~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P 372 (466)
.+.+++.. .|+...+ ..+ +++.+..|-.+. .++..++. +|+-||+||++|-|++|||.|++|
T Consensus 252 ~~~ivtGP~--------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivP 321 (400)
T COG4671 252 KWLIVTGPF--------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVP 321 (400)
T ss_pred ceEEEeCCC--------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEec
Confidence 55555544 5544333 334 778888988775 59966666 999999999999999999999999
Q ss_pred ccc---chhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 373 YFG---DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 373 ~~~---DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
... ||...|.|+++ ||+--++.+ ++++++.|+++|...++-+
T Consensus 322 r~~p~eEQliRA~Rl~~-LGL~dvL~p---e~lt~~~La~al~~~l~~P 366 (400)
T COG4671 322 RAAPREEQLIRAQRLEE-LGLVDVLLP---ENLTPQNLADALKAALARP 366 (400)
T ss_pred cCCCcHHHHHHHHHHHh-cCcceeeCc---ccCChHHHHHHHHhcccCC
Confidence 864 99999999999 899999997 8899999999999999733
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.78 E-value=1.5e-17 Score=160.42 Aligned_cols=351 Identities=12% Similarity=-0.006 Sum_probs=198.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
.||++.+.+..||++|. +|+++|.++|++|+|++.... .+++.+.. ..+.+..++- ..+.+.+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~-----~~~~~~~l~v--------~G~~~~l~ 69 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE-----VLYSMEELSV--------MGLREVLG 69 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc-----cccChHHhhh--------ccHHHHHH
Confidence 58899998888999999 999999999999999997532 34433210 1233333321 11111111
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEeCCC-chh--HHHHHHHcCCceEEecc-chhHHHHHHhhcccccccCccCC
Q 012314 84 KCLQVMPGKLEELIEEINSREDEKIDCFIADGN-IGW--SMEIAKKMNVRGAVFWP-SSAASVALVFRIPKLIDDGIIDS 159 (466)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~-~~~--~~~~A~~lgiP~v~~~~-~~~~~~~~~~~~p~~~~~~~~~~ 159 (466)
.+ ......++++.+.+++ .+||+||.-.. ... ....|+.+|||++.+.+ ..+
T Consensus 70 ~~-~~~~~~~~~~~~~l~~---~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~w-------------------- 125 (385)
T TIGR00215 70 RL-GRLLKIRKEVVQLAKQ---AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVW-------------------- 125 (385)
T ss_pred HH-HHHHHHHHHHHHHHHh---cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHh--------------------
Confidence 11 1112223344444444 89999997443 222 33378899999987531 111
Q ss_pred CCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhcCCcceeccc
Q 012314 160 HGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPL 239 (466)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~p~v~~VGpl 239 (466)
-| ...+++.+. ..+|.+++.+..+-+.. ....-++.+||.-
T Consensus 126 --------------------------aw--~~~~~r~l~----------~~~d~v~~~~~~e~~~~-~~~g~~~~~vGnP 166 (385)
T TIGR00215 126 --------------------------AW--RKWRAKKIE----------KATDFLLAILPFEKAFY-QKKNVPCRFVGHP 166 (385)
T ss_pred --------------------------hc--CcchHHHHH----------HHHhHhhccCCCcHHHH-HhcCCCEEEECCc
Confidence 00 011111111 23445555554433322 1222356678833
Q ss_pred cCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCC
Q 012314 240 LASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELC-----KRPFLWVVRPDITTDAN 314 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~ 314 (466)
..+.... ..+...+...-+.-.+++++|.+--||....-......+++++..+ +.++++...... .
T Consensus 167 v~~~~~~-----~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~----~ 237 (385)
T TIGR00215 167 LLDAIPL-----YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK----R 237 (385)
T ss_pred hhhhccc-----cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch----h
Confidence 2221110 0011111122222234456788877776332133455555554332 234544443220 0
Q ss_pred CCCchhHHHHhcCCceeeccc-chhhhhcCCCcccceeccCCchhhhhhhcCcceeec----cccc---------chhhh
Q 012314 315 DRYPEGFQERVAARGQMISWA-PQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCW----PYFG---------DQFLN 380 (466)
Q Consensus 315 ~~~~~~~~~~~~~n~~~~~~~-p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~----P~~~---------DQ~~~ 380 (466)
...-+.+.+....+..+.-+. +...++..+++ +|+-+|..|+ |++++|+|+|++ |+.. .|..|
T Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~ 314 (385)
T TIGR00215 238 RLQFEQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISL 314 (385)
T ss_pred HHHHHHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeec
Confidence 000011222222222332221 23458877776 9999999887 999999999999 8642 38889
Q ss_pred HHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 012314 381 ERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ----DFKARALELKEKAMSSVREGGSSYKTFQNFL 449 (466)
Q Consensus 381 a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~----~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v 449 (466)
+..+... ++...+. .++.|++.|.+.+.++|+|+ +++++.+.--+++++.+.++|.+.+..+.++
T Consensus 315 ~nil~~~-~~~pel~---q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 315 PNILANR-LLVPELL---QEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred cHHhcCC-ccchhhc---CCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 9999985 9888886 37899999999999999998 8888777777777777766777766555444
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.76 E-value=2.2e-16 Score=151.79 Aligned_cols=315 Identities=17% Similarity=0.172 Sum_probs=174.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
||+|++.+..||+.....|+++|.++||+|++++.+..... .. ....+++++.++..-.. .......+..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~--~~-----~~~~g~~~~~i~~~~~~---~~~~~~~l~~ 71 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEK--RL-----VPKAGIEFYFIPVGGLR---RKGSFRLIKT 71 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh--cc-----cccCCCceEEEeccCcC---CCChHHHHHH
Confidence 79999989899999888999999999999999987432110 00 00135666665521111 1111111111
Q ss_pred HHHh--ccHHHHHHHHHHhcCCCCCccEEEeCCCch--hHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCC
Q 012314 85 CLQV--MPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSH 160 (466)
Q Consensus 85 ~~~~--~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (466)
.... ....+.++++. .+||+|++..... .+..++..+++|.+.+... .
T Consensus 72 ~~~~~~~~~~l~~~i~~------~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~-~--------------------- 123 (348)
T TIGR01133 72 PLKLLKAVFQARRILKK------FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN-A--------------------- 123 (348)
T ss_pred HHHHHHHHHHHHHHHHh------cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC-C---------------------
Confidence 1111 11223444444 8899999975332 3555788889998742100 0
Q ss_pred CCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhcCCcceecccc
Q 012314 161 GTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGPLL 240 (466)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~p~v~~VGpl~ 240 (466)
.+ ....+++ ...+|.+++.+...-+. . ...+||.-.
T Consensus 124 -----------~~---------------------~~~~~~~------~~~~d~ii~~~~~~~~~-----~-~~~~i~n~v 159 (348)
T TIGR01133 124 -----------VP---------------------GLTNKLL------SRFAKKVLISFPGAKDH-----F-EAVLVGNPV 159 (348)
T ss_pred -----------Cc---------------------cHHHHHH------HHHhCeeEECchhHhhc-----C-CceEEcCCc
Confidence 00 0001111 12456666655432221 1 224555322
Q ss_pred CCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHH---hCCCCEEEEEcCCCCCCCCCCC
Q 012314 241 ASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLE---LCKRPFLWVVRPDITTDANDRY 317 (466)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~---~~~~~~i~~~~~~~~~~~~~~~ 317 (466)
...... .+.. ...+...+++++|.+..|+.. .......+.++++ ..+.++++..++. ..
T Consensus 160 ~~~~~~------~~~~---~~~~~~~~~~~~i~~~gg~~~--~~~~~~~l~~a~~~l~~~~~~~~~~~g~~-------~~ 221 (348)
T TIGR01133 160 RQEIRS------LPVP---RERFGLREGKPTILVLGGSQG--AKILNELVPKALAKLAEKGIQIVHQTGKN-------DL 221 (348)
T ss_pred CHHHhc------ccch---hhhcCCCCCCeEEEEECCchh--HHHHHHHHHHHHHHHhhcCcEEEEECCcc-------hH
Confidence 211100 0000 012222223344544334432 1222222334443 3345565544433 11
Q ss_pred chhHHHHhcC-C-ceeeccc--chhhhhcCCCcccceeccCCchhhhhhhcCcceeecccc---cchhhhHHHHHHhhhc
Q 012314 318 PEGFQERVAA-R-GQMISWA--PQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF---GDQFLNERYICDFWKV 390 (466)
Q Consensus 318 ~~~~~~~~~~-n-~~~~~~~--p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~---~DQ~~~a~rv~~~~G~ 390 (466)
+.+.+...+ + ..++.|. +...+|..+++ +|+++|.+++.||+++|+|+|++|.. .+|..++..+.+ .|.
T Consensus 222 -~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~ 297 (348)
T TIGR01133 222 -EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGA 297 (348)
T ss_pred -HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCC
Confidence 233322221 1 1233344 45678977776 99999988999999999999999874 467889999998 599
Q ss_pred eeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHH
Q 012314 391 GLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALE 426 (466)
Q Consensus 391 G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~ 426 (466)
|..+.. ...++++|.+++.++++|++.+++..+
T Consensus 298 G~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~ 330 (348)
T TIGR01133 298 GLVIRQ---KELLPEKLLEALLKLLLDPANLEAMAE 330 (348)
T ss_pred EEEEec---ccCCHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999864 556899999999999999877765443
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.74 E-value=1.7e-15 Score=147.13 Aligned_cols=141 Identities=14% Similarity=0.216 Sum_probs=100.0
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchhHHHH---hcCCceeecccchh-hhhc
Q 012314 268 PSSVVYVSFGSFTILDQVQFQELALGLELC-KRPFLWVVRPDITTDANDRYPEGFQER---VAARGQMISWAPQL-RVLN 342 (466)
Q Consensus 268 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~n~~~~~~~p~~-~ll~ 342 (466)
++++|++..|+.... ..+..+++++.+. +.+++++.+.+ ..+.+.+.+. .++|+.+.+|+++. +++.
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~------~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~ 272 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN------EALKQSLEDLQETNPDALKVFGYVENIDELFR 272 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC------HHHHHHHHHHHhcCCCcEEEEechhhHHHHHH
Confidence 355777766765421 2345666666543 45666666543 1122333222 23578888999874 6998
Q ss_pred CCCcccceeccCCchhhhhhhcCcceeec-ccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHH
Q 012314 343 HPSIACFLSHCGWNSTMEGVSNGIPFLCW-PYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFK 421 (466)
Q Consensus 343 ~~~~~~~i~hgG~~s~~eal~~GvP~l~~-P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r 421 (466)
.+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+.+ .|.|+... +.++|.++|.++++|++.+
T Consensus 273 ~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~~-------~~~~l~~~i~~ll~~~~~~ 342 (380)
T PRK13609 273 VTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVIR-------DDEEVFAKTEALLQDDMKL 342 (380)
T ss_pred hccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEEC-------CHHHHHHHHHHHHCCHHHH
Confidence 8877 99999988999999999999985 667777889988888 49888652 5799999999999998776
Q ss_pred HHHHH
Q 012314 422 ARALE 426 (466)
Q Consensus 422 ~~a~~ 426 (466)
++..+
T Consensus 343 ~~m~~ 347 (380)
T PRK13609 343 LQMKE 347 (380)
T ss_pred HHHHH
Confidence 65443
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.72 E-value=9.3e-16 Score=141.18 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=77.3
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCCCCCchhHHHH--hcCCceeecccchh-hhhcC
Q 012314 269 SSVVYVSFGSFTILDQVQFQELALGLELC--KRPFLWVVRPDITTDANDRYPEGFQER--VAARGQMISWAPQL-RVLNH 343 (466)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~n~~~~~~~p~~-~ll~~ 343 (466)
.+.|+++||... .......+++++... +.++.++++.. ....+.+.+. ..+|+.+..+++++ ++|..
T Consensus 170 ~~~iLi~~GG~d--~~~~~~~~l~~l~~~~~~~~i~vv~G~~------~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~ 241 (279)
T TIGR03590 170 LRRVLVSFGGAD--PDNLTLKLLSALAESQINISITLVTGSS------NPNLDELKKFAKEYPNIILFIDVENMAELMNE 241 (279)
T ss_pred cCeEEEEeCCcC--CcCHHHHHHHHHhccccCceEEEEECCC------CcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHH
Confidence 358999999643 333455666777554 45677777765 1223333332 24688888999986 69977
Q ss_pred CCcccceeccCCchhhhhhhcCcceeecccccchhhhHHH
Q 012314 344 PSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERY 383 (466)
Q Consensus 344 ~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~r 383 (466)
+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 242 aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 242 ADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 777 999999 9999999999999999999999999875
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.66 E-value=5.5e-14 Score=136.57 Aligned_cols=164 Identities=12% Similarity=0.232 Sum_probs=109.4
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHH-Hh-CCCCEEEEEcCCCCCCCCCCCchhHHHHh--cCCceeecccchh-hhhc
Q 012314 268 PSSVVYVSFGSFTILDQVQFQELALGL-EL-CKRPFLWVVRPDITTDANDRYPEGFQERV--AARGQMISWAPQL-RVLN 342 (466)
Q Consensus 268 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~n~~~~~~~p~~-~ll~ 342 (466)
++++|++..|+.+. ...+..+++++ .. .+.+++++.+++ ..+.+.+.+.. .+++.+.+|+++. .++.
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~------~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~ 272 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS------KELKRSLTAKFKSNENVLILGYTKHMNEWMA 272 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC------HHHHHHHHHHhccCCCeEEEeccchHHHHHH
Confidence 45688888887642 23445555554 22 235666666544 11223333222 3577788999764 5997
Q ss_pred CCCcccceeccCCchhhhhhhcCcceeec-ccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHH
Q 012314 343 HPSIACFLSHCGWNSTMEGVSNGIPFLCW-PYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFK 421 (466)
Q Consensus 343 ~~~~~~~i~hgG~~s~~eal~~GvP~l~~-P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r 421 (466)
.+++ +|+..|..|+.||+++|+|+|++ |..+.|..|+..+.+ .|+|+... +.+++.++|.++++|++.+
T Consensus 273 ~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~-------~~~~l~~~i~~ll~~~~~~ 342 (391)
T PRK13608 273 SSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD-------TPEEAIKIVASLTNGNEQL 342 (391)
T ss_pred hhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC-------CHHHHHHHHHHHhcCHHHH
Confidence 7777 99988888999999999999998 776777899999999 49998763 6899999999999887655
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012314 422 ARALELKEKAMSSVREGGSSYKTFQNFLQWVK 453 (466)
Q Consensus 422 ~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 453 (466)
+ +|++..++. ....+....++.+++.+.
T Consensus 343 ~---~m~~~~~~~-~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 343 T---NMISTMEQD-KIKYATQTICRDLLDLIG 370 (391)
T ss_pred H---HHHHHHHHh-cCCCCHHHHHHHHHHHhh
Confidence 4 444444432 123344444444444443
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.62 E-value=4.8e-14 Score=137.16 Aligned_cols=343 Identities=12% Similarity=0.036 Sum_probs=169.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
+||++.+.+..||++|.. ++++|.++++++.++..... .+...+. ...+.++.++- ....+.+.
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~l~~--------~g~~~~~~ 65 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC-----ESLFDMEELAV--------MGLVEVLP 65 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC-----ccccCHHHhhh--------ccHHHHHH
Confidence 589999988889999999 99999998888888875432 2332210 01222222221 01111111
Q ss_pred HHHH--hccHHHHHHHHHHhcCCCCCccEEEeCCC-chhH--HHHHHHcCCceEEeccchhHHHHHHhhcccccccCccC
Q 012314 84 KCLQ--VMPGKLEELIEEINSREDEKIDCFIADGN-IGWS--MEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIID 158 (466)
Q Consensus 84 ~~~~--~~~~~~~~ll~~l~~~~~~~~DlvV~D~~-~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (466)
.+.. .....+++++++ .+||+|+.-.. ..+. ...|...|||++.+......
T Consensus 66 ~~~~~~~~~~~~~~~l~~------~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~------------------ 121 (380)
T PRK00025 66 RLPRLLKIRRRLKRRLLA------EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW------------------ 121 (380)
T ss_pred HHHHHHHHHHHHHHHHHH------cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh------------------
Confidence 1111 112234455555 89999886322 1222 34467789998864211000
Q ss_pred CCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhcCCcceecc
Q 012314 159 SHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIGP 238 (466)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~p~v~~VGp 238 (466)
.+. +.. ... ....+|.+++.+...-+.- ....-++.++|.
T Consensus 122 ---------------------------~~~--~~~---~~~-------~~~~~d~i~~~~~~~~~~~-~~~g~~~~~~G~ 161 (380)
T PRK00025 122 ---------------------------AWR--QGR---AFK-------IAKATDHVLALFPFEAAFY-DKLGVPVTFVGH 161 (380)
T ss_pred ---------------------------hcC--chH---HHH-------HHHHHhhheeCCccCHHHH-HhcCCCeEEECc
Confidence 000 000 000 1123455555554332221 111123667772
Q ss_pred ccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCC
Q 012314 239 LLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELC-----KRPFLWVVRPDITTDA 313 (466)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~ 313 (466)
-..+.... .+....+...+.-.+++++|++..||...........+++++..+ +.+++++.++.
T Consensus 162 p~~~~~~~------~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~----- 230 (380)
T PRK00025 162 PLADAIPL------LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP----- 230 (380)
T ss_pred CHHHhccc------ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh-----
Confidence 22211100 001111222222223345666666664322223344455554322 33556654422
Q ss_pred CCCCchhHHHHhcC----CceeecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeeccccc--------chhhh-
Q 012314 314 NDRYPEGFQERVAA----RGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFG--------DQFLN- 380 (466)
Q Consensus 314 ~~~~~~~~~~~~~~----n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~--------DQ~~~- 380 (466)
...+.+.+.... ++.+..- .-..++..+++ +|+.+|.+++ |++++|+|+|++|... .|..|
T Consensus 231 --~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~ 304 (380)
T PRK00025 231 --KRREQIEEALAEYAGLEVTLLDG-QKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVP 304 (380)
T ss_pred --hhHHHHHHHHhhcCCCCeEEEcc-cHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCC
Confidence 122233322221 2333220 12468877777 9999998777 9999999999995431 12111
Q ss_pred ----HHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 012314 381 ----ERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNF 448 (466)
Q Consensus 381 ----a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~ 448 (466)
+..+++. +++..+. ....+++.|.+.+.++++|++.+++..+-.+.+++.+ ..+++.+.++.+
T Consensus 305 ~~~l~~~~~~~-~~~~~~~---~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i 371 (380)
T PRK00025 305 YVSLPNLLAGR-ELVPELL---QEEATPEKLARALLPLLADGARRQALLEGFTELHQQL-RCGADERAAQAV 371 (380)
T ss_pred eeehHHHhcCC-Ccchhhc---CCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHH
Confidence 2223321 3333333 2567899999999999999987776555544444433 234444333333
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.56 E-value=1.1e-12 Score=127.32 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=94.5
Q ss_pred CCCeEEEEEeccccccCHHHHHHHHHHHHh---------CCCCEEEEEcCCCCCCCCCCCchhHHHH-hcCCceeecccc
Q 012314 267 QPSSVVYVSFGSFTILDQVQFQELALGLEL---------CKRPFLWVVRPDITTDANDRYPEGFQER-VAARGQMISWAP 336 (466)
Q Consensus 267 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~n~~~~~~~p 336 (466)
+++++|++.-|+...- .+..+++++.. .+.++++++|.+ ..+.+.+.+. ...++.+.+|++
T Consensus 204 ~~~~~il~~Gg~~g~~---~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~------~~~~~~L~~~~~~~~v~~~G~~~ 274 (382)
T PLN02605 204 EDLPAVLLMGGGEGMG---PLEETARALGDSLYDKNLGKPIGQVVVICGRN------KKLQSKLESRDWKIPVKVRGFVT 274 (382)
T ss_pred CCCcEEEEECCCcccc---cHHHHHHHHHHhhccccccCCCceEEEEECCC------HHHHHHHHhhcccCCeEEEeccc
Confidence 3455777666554322 23333333322 234566777654 1122222221 124677789998
Q ss_pred hh-hhhcCCCcccceeccCCchhhhhhhcCcceeecccccchh-hhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHH
Q 012314 337 QL-RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQF-LNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQV 414 (466)
Q Consensus 337 ~~-~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~-~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~l 414 (466)
+. +++..+++ +|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+ .|.|..+. ++++|.++|.++
T Consensus 275 ~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~~-------~~~~la~~i~~l 344 (382)
T PLN02605 275 NMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFSE-------SPKEIARIVAEW 344 (382)
T ss_pred cHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeecC-------CHHHHHHHHHHH
Confidence 65 59977777 999999999999999999999998766665 68888888 49998652 689999999999
Q ss_pred hcC-HHHHHHHHH
Q 012314 415 LGN-QDFKARALE 426 (466)
Q Consensus 415 l~~-~~~r~~a~~ 426 (466)
+.| ++.+++..+
T Consensus 345 l~~~~~~~~~m~~ 357 (382)
T PLN02605 345 FGDKSDELEAMSE 357 (382)
T ss_pred HcCCHHHHHHHHH
Confidence 987 655544333
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.52 E-value=6.2e-12 Score=121.61 Aligned_cols=329 Identities=13% Similarity=0.061 Sum_probs=178.3
Q ss_pred CCccCHHHHHHHHHHHHh--CCCEEE---EEeCCcchH-HHHHhhhcCCCCCCCeEEEecCC-CCCCCCCCccHHHHHHH
Q 012314 12 PAQGHVIPLLEFSQCLAK--HGFRVT---FVNTDYNHK-RVVESLQGKNYLGEQIHLVSIPD-GMEPWEDRNDLGKLIEK 84 (466)
Q Consensus 12 ~~~GH~~p~l~la~~L~~--rGh~Vt---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 84 (466)
.|+|-=.-.++||++|.+ .|++|. +++.....+ ..... .+ .+..+|. ++. .......+..
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~--------~g-~~~~~~sgg~~----~~~~~~~~~~ 71 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI--------IG-PTKELPSGGFS----YQSLRGLLRD 71 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce--------eC-CCCCCCCCCcc----CCCHHHHHHH
Confidence 455555668899999998 699999 988864432 11110 12 3344432 221 1223333333
Q ss_pred HHH-hccH--HHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCC
Q 012314 85 CLQ-VMPG--KLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHG 161 (466)
Q Consensus 85 ~~~-~~~~--~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (466)
..+ .... ....++++.. .+||+||+-.-+. +..+|...|+|++++.+.-.-.+ +.+ ..
T Consensus 72 ~~~gl~~~~~~~~~~~~~~~----~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~---------~~~----~~- 132 (396)
T TIGR03492 72 LRAGLVGLTLGQWRALRKWA----KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYY---------WES----GP- 132 (396)
T ss_pred HHhhHHHHHHHHHHHHHHHh----hcCCEEEEECcHH-HHHHHHHcCCCceEEEeecccee---------ecC----CC-
Confidence 322 1111 1223334421 2899999876444 88899999999998543211100 000 00
Q ss_pred CCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhcCCcceec-ccc
Q 012314 162 TPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIG-PLL 240 (466)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~p~v~~VG-pl~ 240 (466)
.....+....+||.....+ + .... ....++.+++.+..+-+.- ....-++.+|| |+.
T Consensus 133 ~~~~~~~~~~~~G~~~~p~-e--------------~n~l------~~~~a~~v~~~~~~t~~~l-~~~g~k~~~vGnPv~ 190 (396)
T TIGR03492 133 RRSPSDEYHRLEGSLYLPW-E--------------RWLM------RSRRCLAVFVRDRLTARDL-RRQGVRASYLGNPMM 190 (396)
T ss_pred CCccchhhhccCCCccCHH-H--------------HHHh------hchhhCEEeCCCHHHHHHH-HHCCCeEEEeCcCHH
Confidence 0011122222233221100 0 0010 1145666777664433332 12224889999 554
Q ss_pred CCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCCCCCC
Q 012314 241 ASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELC----KRPFLWVVRPDITTDANDR 316 (466)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~ 316 (466)
..-... .. . -+ .++++.|.+--||-...-.+.+..+++++..+ +..+++.+.++.
T Consensus 191 d~l~~~-------~~-~----~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~------- 249 (396)
T TIGR03492 191 DGLEPP-------ER-K----PL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL------- 249 (396)
T ss_pred hcCccc-------cc-c----cc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC-------
Confidence 432211 00 0 11 12345788877776433334455666666544 456777774331
Q ss_pred CchhHHHHhc-------------------CCceeecccch-hhhhcCCCcccceeccCCchhhhhhhcCcceeecccccc
Q 012314 317 YPEGFQERVA-------------------ARGQMISWAPQ-LRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGD 376 (466)
Q Consensus 317 ~~~~~~~~~~-------------------~n~~~~~~~p~-~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~D 376 (466)
..+.+.+... .++.+..+..+ ..++..+++ +|+-+|..| .|+...|+|+|.+|....
T Consensus 250 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~ 326 (396)
T TIGR03492 250 SLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGP 326 (396)
T ss_pred CHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCC
Confidence 1122222111 12444455444 468977777 999999766 999999999999998777
Q ss_pred hhhhHHHHHHhh----hceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHH
Q 012314 377 QFLNERYICDFW----KVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARAL 425 (466)
Q Consensus 377 Q~~~a~rv~~~~----G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~ 425 (466)
|. |+...++ . |.++.+. ..+.+.|.+++.++++|++.+++..
T Consensus 327 q~-na~~~~~-~~~l~g~~~~l~-----~~~~~~l~~~l~~ll~d~~~~~~~~ 372 (396)
T TIGR03492 327 QF-TYGFAEA-QSRLLGGSVFLA-----SKNPEQAAQVVRQLLADPELLERCR 372 (396)
T ss_pred HH-HHHHHHh-hHhhcCCEEecC-----CCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 76 8876654 2 6666663 3456999999999999987766554
No 43
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.51 E-value=7.6e-16 Score=131.15 Aligned_cols=141 Identities=13% Similarity=0.173 Sum_probs=97.0
Q ss_pred EEEEEeccccccCH-HHHHHHHHHHHh--CCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeecccc-hhhhhcCCCc
Q 012314 271 VVYVSFGSFTILDQ-VQFQELALGLEL--CKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAP-QLRVLNHPSI 346 (466)
Q Consensus 271 ~v~vs~Gs~~~~~~-~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p-~~~ll~~~~~ 346 (466)
+|+|+.||...... +.+..+...+.. ...++++.+|.... ......+. +...++.+.+|++ ..+++..+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~----~~~~~~~~-~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY----EELKIKVE-NFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC----HHHCCCHC-CTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH----HHHHHHHh-ccCCcEEEEechhhHHHHHHHcCE
Confidence 48999998743211 122223333322 25788888876611 11111111 1126788899999 6679977777
Q ss_pred ccceeccCCchhhhhhhcCcceeeccccc----chhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHH
Q 012314 347 ACFLSHCGWNSTMEGVSNGIPFLCWPYFG----DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKA 422 (466)
Q Consensus 347 ~~~i~hgG~~s~~eal~~GvP~l~~P~~~----DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~ 422 (466)
+|||||.||++|++++|+|+|++|... +|..||..+++ .|+|..+.. ...+.+.|.++|.+++.++..+.
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~---~~~~~~~L~~~i~~l~~~~~~~~ 149 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDE---SELNPEELAEAIEELLSDPEKLK 149 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSEC---CC-SCCCHHHHHHCHCCCHH-SH
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCc---ccCCHHHHHHHHHHHHcCcHHHH
Confidence 999999999999999999999999988 99999999999 599999985 67779999999999998876533
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.50 E-value=3.1e-11 Score=116.34 Aligned_cols=344 Identities=10% Similarity=0.036 Sum_probs=178.3
Q ss_pred EEEEEc---CCC-ccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHH
Q 012314 5 RVLVMP---APA-QGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK 80 (466)
Q Consensus 5 ~il~~~---~~~-~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
||++++ .|. .|+...+..++++|.++||+|++++.......... .....+...+. +......
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~---- 66 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGP--------ARVVPVPSVPL--PGYPEIR---- 66 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCC--------CCceeeccccc--CcccceE----
Confidence 355554 223 69999999999999999999999998653221100 01111111110 0000000
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch---hHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCcc
Q 012314 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG---WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGII 157 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 157 (466)
.. -.....+...++. .+||+|++..... .+..+++..++|++............
T Consensus 67 ---~~-~~~~~~~~~~~~~------~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------- 123 (364)
T cd03814 67 ---LA-LPPRRRVRRLLDA------FAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLR------------- 123 (364)
T ss_pred ---ec-ccchhhHHHHHHh------cCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhh-------------
Confidence 00 0011123333333 7899998764332 45677888999988755432210000
Q ss_pred CCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhcCCcceec
Q 012314 158 DSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIG 237 (466)
Q Consensus 158 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~p~v~~VG 237 (466)
... ............. .....+|.+++.+....+.......+++..+.
T Consensus 124 ----------------------------~~~-~~~~~~~~~~~~~---~~~~~~d~i~~~s~~~~~~~~~~~~~~~~~~~ 171 (364)
T cd03814 124 ----------------------------YYG-LGPLSWLAWAYLR---WFHNRADRVLVPSPSLADELRARGFRRVRLWP 171 (364)
T ss_pred ----------------------------hcc-cchHhHhhHHHHH---HHHHhCCEEEeCCHHHHHHHhccCCCceeecC
Confidence 000 0000000011111 12357888888888766532111223444433
Q ss_pred cccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCCC
Q 012314 238 PLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELC----KRPFLWVVRPDITTDA 313 (466)
Q Consensus 238 pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~ 313 (466)
+-....... +..........+- ..++.+++..|+... ......+++++..+ +.++++...+.
T Consensus 172 ~g~~~~~~~----~~~~~~~~~~~~~---~~~~~~i~~~G~~~~--~k~~~~~i~~~~~l~~~~~~~l~i~G~~~----- 237 (364)
T cd03814 172 RGVDTELFH----PRRRDEALRARLG---PPDRPVLLYVGRLAP--EKNLEALLDADLPLRRRPPVRLVIVGDGP----- 237 (364)
T ss_pred CCccccccC----cccccHHHHHHhC---CCCCeEEEEEecccc--ccCHHHHHHHHHHhhhcCCceEEEEeCCc-----
Confidence 222111100 0000000011111 123356677776532 22334444444333 34444443322
Q ss_pred CCCCchhHHHHhcCCceeecccchhh---hhcCCCcccceeccC----CchhhhhhhcCcceeecccccchhhhHHHHHH
Q 012314 314 NDRYPEGFQERVAARGQMISWAPQLR---VLNHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICD 386 (466)
Q Consensus 314 ~~~~~~~~~~~~~~n~~~~~~~p~~~---ll~~~~~~~~i~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~ 386 (466)
..+.+. ...+|+.+.+|+++.+ ++..+++ +|..+. .++++||+++|+|+|+.+.. .+...+++
T Consensus 238 ---~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~ 307 (364)
T cd03814 238 ---ARARLE-ARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTD 307 (364)
T ss_pred ---hHHHHh-ccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcC
Confidence 111111 2357888889998654 7877776 776543 47899999999999998644 45566666
Q ss_pred hhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 012314 387 FWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQW 451 (466)
Q Consensus 387 ~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~ 451 (466)
. +.|.... .-+.+++.++|.+++.|++.+++..+-+.+..+ .-+.....+++++.
T Consensus 308 ~-~~g~~~~-----~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 362 (364)
T cd03814 308 G-ENGLLVE-----PGDAEAFAAALAALLADPELRRRMAARARAEAE----RRSWEAFLDNLLEA 362 (364)
T ss_pred C-cceEEcC-----CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHh
Confidence 3 8898884 346788999999999998777655544444332 33445555555443
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.49 E-value=1e-10 Score=116.70 Aligned_cols=138 Identities=12% Similarity=0.136 Sum_probs=87.7
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCCCCCchhHHHHh-cCCceeecccchh---hhhcCCC
Q 012314 271 VVYVSFGSFTILDQVQFQELALGLELCK-RPFLWVVRPDITTDANDRYPEGFQERV-AARGQMISWAPQL---RVLNHPS 345 (466)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~n~~~~~~~p~~---~ll~~~~ 345 (466)
.+++..|+.. ....+..++++++..+ .++++ +|++ ...+.+.+.. ..++.+.+++++. .++..++
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~i-vG~G-------~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aD 333 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAF-VGDG-------PYREELEKMFAGTPTVFTGMLQGDELSQAYASGD 333 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEE-EeCC-------hHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCC
Confidence 4556668753 3345666777776654 45444 4433 1223333322 2577788999864 4787777
Q ss_pred cccceeccC----CchhhhhhhcCcceeecccccchhhhHHHHHH---hhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 346 IACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICD---FWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 346 ~~~~i~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~---~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
+ +|.-.. ..++.||+++|+|+|+.... .....+.+ . +.|..+++ -+.++++++|.++++|+
T Consensus 334 v--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-----~d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 334 V--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-----GDVDDCVEKLETLLADP 401 (465)
T ss_pred E--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-----CCHHHHHHHHHHHHhCH
Confidence 7 775332 35789999999999987543 33334443 4 77888853 36899999999999988
Q ss_pred HHHHHHHHHHHH
Q 012314 419 DFKARALELKEK 430 (466)
Q Consensus 419 ~~r~~a~~~~~~ 430 (466)
+.+++..+-++.
T Consensus 402 ~~~~~~~~~a~~ 413 (465)
T PLN02871 402 ELRERMGAAARE 413 (465)
T ss_pred HHHHHHHHHHHH
Confidence 766554444433
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.42 E-value=1.6e-11 Score=106.76 Aligned_cols=148 Identities=10% Similarity=0.050 Sum_probs=112.9
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHh--cCCceeecccc-hhhhhcCCC
Q 012314 269 SSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV--AARGQMISWAP-QLRVLNHPS 345 (466)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~n~~~~~~~p-~~~ll~~~~ 345 (466)
+.-|+|++|. +.+....-.++..+.+.++.+-+++++. .+..+++.+.. .+|..+..... ...|+..++
T Consensus 158 ~r~ilI~lGG--sDpk~lt~kvl~~L~~~~~nl~iV~gs~------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d 229 (318)
T COG3980 158 KRDILITLGG--SDPKNLTLKVLAELEQKNVNLHIVVGSS------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEAD 229 (318)
T ss_pred hheEEEEccC--CChhhhHHHHHHHhhccCeeEEEEecCC------CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcc
Confidence 4479999994 4566677778888887776666666643 33444444433 36777665555 446997777
Q ss_pred cccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHH
Q 012314 346 IACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARAL 425 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~ 425 (466)
+ .|+-||. |+.|++.-|+|.+++|+..-|-..|...+. +|+-..+.. .++++.....+.++.+|...|++.-
T Consensus 230 ~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~----~l~~~~~~~~~~~i~~d~~~rk~l~ 301 (318)
T COG3980 230 L--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGY----HLKDLAKDYEILQIQKDYARRKNLS 301 (318)
T ss_pred h--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccC----CCchHHHHHHHHHhhhCHHHhhhhh
Confidence 7 9998886 899999999999999999999999999998 699888863 3888888899999999988888776
Q ss_pred HHHHHHH
Q 012314 426 ELKEKAM 432 (466)
Q Consensus 426 ~~~~~~~ 432 (466)
.-++.+-
T Consensus 302 ~~~~~i~ 308 (318)
T COG3980 302 FGSKLIG 308 (318)
T ss_pred hccceee
Confidence 6555443
No 47
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.39 E-value=1e-09 Score=107.29 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=63.4
Q ss_pred CCceeecccchhh---hhcCCCccccee-ccCC-chhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCC
Q 012314 327 ARGQMISWAPQLR---VLNHPSIACFLS-HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 401 (466)
Q Consensus 327 ~n~~~~~~~p~~~---ll~~~~~~~~i~-hgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~ 401 (466)
+++.+.+++|+.+ ++..+++-++-+ +.|. .++.||+++|+|+|+. |.......+.+. ..|..+++
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~-~~G~lv~~----- 350 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDG-ENGLLVDF----- 350 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccC-CceEEcCC-----
Confidence 5788889999764 676777722223 2232 4789999999999987 445566666652 57887743
Q ss_pred cCHHHHHHHHHHHhcCHHHHHHH
Q 012314 402 ITREEIKNKVDQVLGNQDFKARA 424 (466)
Q Consensus 402 ~~~~~l~~~i~~ll~~~~~r~~a 424 (466)
-++++++++|.++++|++.+++.
T Consensus 351 ~d~~~la~~i~~ll~~~~~~~~l 373 (396)
T cd03818 351 FDPDALAAAVIELLDDPARRARL 373 (396)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHH
Confidence 46999999999999988665543
No 48
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.38 E-value=2.1e-12 Score=106.43 Aligned_cols=125 Identities=15% Similarity=0.182 Sum_probs=81.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKC 85 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (466)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+.+. +++|..++... ...............
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~~-~~~~~~~~~~~~~~~ 70 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGDS-RLPRSLEPLANLRRL 70 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSCG-GGGHHHHHHHHHHCH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCCc-CcCcccchhhhhhhH
Confidence 78999999999999999999999999999999999999999665 79999987550 000000011111111
Q ss_pred HHh--ccHHHHHHHHHHhc------CCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhH
Q 012314 86 LQV--MPGKLEELIEEINS------REDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAA 140 (466)
Q Consensus 86 ~~~--~~~~~~~ll~~l~~------~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 140 (466)
.+. ......+.++..+. .+....|+++.+.....+..+|+++|||.+.....+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 71 ARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 111 11112222222221 11146788888887778999999999999998765553
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.36 E-value=7.9e-10 Score=106.21 Aligned_cols=138 Identities=13% Similarity=0.109 Sum_probs=85.4
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeecccchh---hhhc
Q 012314 269 SSVVYVSFGSFTILDQVQFQELALGLELC---KRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQL---RVLN 342 (466)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p~~---~ll~ 342 (466)
.+.+++..|+.. +......+++++..+ +.++++...+. ............+++.+.+++++. .++.
T Consensus 190 ~~~~i~~~G~~~--~~k~~~~li~~~~~l~~~~~~l~i~G~~~------~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 261 (359)
T cd03823 190 GRLRFGFIGQLT--PHKGVDLLLEAFKRLPRGDIELVIVGNGL------ELEEESYELEGDPRVEFLGAYPQEEIDDFYA 261 (359)
T ss_pred CceEEEEEecCc--cccCHHHHHHHHHHHHhcCcEEEEEcCch------hhhHHHHhhcCCCeEEEeCCCCHHHHHHHHH
Confidence 346677778753 223344455555433 45554443322 000010000124788888999755 4687
Q ss_pred CCCccccee----ccC-CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcC
Q 012314 343 HPSIACFLS----HCG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 417 (466)
Q Consensus 343 ~~~~~~~i~----hgG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 417 (466)
.+++ +|. ..| ..++.||+++|+|+|+.+ .......+.+. +.|..+.. -+.+++.+++.++++|
T Consensus 262 ~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~----~~~~~e~i~~~-~~g~~~~~-----~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 262 EIDV--LVVPSIWPENFPLVIREALAAGVPVIASD----IGGMAELVRDG-VNGLLFPP-----GDAEDLAAALERLIDD 329 (359)
T ss_pred hCCE--EEEcCcccCCCChHHHHHHHCCCCEEECC----CCCHHHHhcCC-CcEEEECC-----CCHHHHHHHHHHHHhC
Confidence 7777 663 233 357899999999999874 44566667663 57888853 3589999999999998
Q ss_pred HHHHHHHHH
Q 012314 418 QDFKARALE 426 (466)
Q Consensus 418 ~~~r~~a~~ 426 (466)
+..++++.+
T Consensus 330 ~~~~~~~~~ 338 (359)
T cd03823 330 PDLLERLRA 338 (359)
T ss_pred hHHHHHHHH
Confidence 876555443
No 50
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.36 E-value=8.6e-10 Score=108.23 Aligned_cols=332 Identities=17% Similarity=0.146 Sum_probs=168.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHH
Q 012314 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKL 81 (466)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
+++||++++....|+-..+..+|++|+++||+|++++........ .. ....++.++.++..-.. .......
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~-~~-----~~~~~v~~~~~~~~~~~---~~~~~~~ 72 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHD-EI-----LSNPNITIHPLPPPPQR---LNKLPFL 72 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCH-HH-----hcCCCEEEEECCCCccc---cccchHH
Confidence 567888888888888899999999999999999999975322111 10 01246777776532100 1111122
Q ss_pred HHH---HHHhccHHHHHHHHHHhcCCCCCccEEEeCC-Cch----hHHHHHHHcCCceEEeccchhHHHHHHhhcccccc
Q 012314 82 IEK---CLQVMPGKLEELIEEINSREDEKIDCFIADG-NIG----WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLID 153 (466)
Q Consensus 82 ~~~---~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~-~~~----~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 153 (466)
+.. ....+...++.+++. .+||+|++.. ... .+..++...++|+|..+.........
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~------~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~--------- 137 (415)
T cd03816 73 LFAPLKVLWQFFSLLWLLYKL------RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILA--------- 137 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhc------CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHh---------
Confidence 221 111222223333333 6799999853 211 24445666799998865532210000
Q ss_pred cCccCCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHH-hhc-C
Q 012314 154 DGIIDSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAF-TTF-P 231 (466)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~-~~~-p 231 (466)
+ . .........+..++.+. ....+|.+++.|...-+.-.. ... .
T Consensus 138 -----------------------------~--~-~~~~~~~~~~~~~~e~~--~~~~ad~ii~vS~~~~~~l~~~~~~~~ 183 (415)
T cd03816 138 -----------------------------L--K-LGENHPLVRLAKWYEKL--FGRLADYNLCVTKAMKEDLQQFNNWKI 183 (415)
T ss_pred -----------------------------c--c-cCCCCHHHHHHHHHHHH--HhhcCCEeeecCHHHHHHHHhhhccCC
Confidence 0 0 00000000111111110 124578888888764332211 111 2
Q ss_pred Cccee--ccccCCCCCCCCCCCcccCCccchhhh----------------ccCCCCeEEEEEeccccccCHHHHHHHHHH
Q 012314 232 ELLPI--GPLLASNRLGNTAGYFWCEDSNCLKWL----------------DQQQPSSVVYVSFGSFTILDQVQFQELALG 293 (466)
Q Consensus 232 ~v~~V--Gpl~~~~~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a 293 (466)
++..| |+...-.+. +....-..+. ...+++..++++.|... +...+..+++|
T Consensus 184 ki~vI~Ng~~~~f~p~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~--~~K~~~~li~A 253 (415)
T cd03816 184 RATVLYDRPPEQFRPL--------PLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWT--PDEDFGILLDA 253 (415)
T ss_pred CeeecCCCCHHHceeC--------cHHHHHHHHHhccccccccccccccceecCCCceEEEEecccc--CCCCHHHHHHH
Confidence 22222 211000000 0000000010 01123446666677643 23344455555
Q ss_pred HHhCC---------CCE-EEEEcCCCCCCCCCCCchhHHHHh---c-CCceee-cccchh---hhhcCCCccccee-c--
Q 012314 294 LELCK---------RPF-LWVVRPDITTDANDRYPEGFQERV---A-ARGQMI-SWAPQL---RVLNHPSIACFLS-H-- 352 (466)
Q Consensus 294 ~~~~~---------~~~-i~~~~~~~~~~~~~~~~~~~~~~~---~-~n~~~~-~~~p~~---~ll~~~~~~~~i~-h-- 352 (466)
+..+. .++ ++.+|.+ ...+.+.+.. . +|+.+. +|+|.. .+|+.+++ +|. +
T Consensus 254 ~~~l~~~~~~~~~~~~i~l~ivG~G-------~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~ 324 (415)
T cd03816 254 LVAYEKSAATGPKLPKLLCIITGKG-------PLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTS 324 (415)
T ss_pred HHHHHHhhcccccCCCEEEEEEecC-------ccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEcccc
Confidence 53321 123 2333433 1223333322 2 456655 688754 46877777 653 1
Q ss_pred ----cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcC---HHHHH
Q 012314 353 ----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN---QDFKA 422 (466)
Q Consensus 353 ----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~---~~~r~ 422 (466)
|-.+++.||+++|+|+|+. |.......+++. +.|..+ + +.++|+++|.++++| ++-++
T Consensus 325 ~~~~~~p~~~~Eama~G~PVI~s----~~~~~~eiv~~~-~~G~lv-----~--d~~~la~~i~~ll~~~~~~~~~~ 389 (415)
T cd03816 325 SSGLDLPMKVVDMFGCGLPVCAL----DFKCIDELVKHG-ENGLVF-----G--DSEELAEQLIDLLSNFPNRGKLN 389 (415)
T ss_pred ccccCCcHHHHHHHHcCCCEEEe----CCCCHHHHhcCC-CCEEEE-----C--CHHHHHHHHHHHHhcCCCHHHHH
Confidence 1234789999999999987 344566677763 788887 2 689999999999988 55444
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.35 E-value=3.9e-10 Score=109.51 Aligned_cols=344 Identities=15% Similarity=0.041 Sum_probs=171.1
Q ss_pred EEEEEcCC----CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHH
Q 012314 5 RVLVMPAP----AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK 80 (466)
Q Consensus 5 ~il~~~~~----~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
||++++.. ..|+......+++.|+++||+|++++....................++.+..++...... ......
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 78 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKK--NGLLKR 78 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCc--cchHHH
Confidence 46666643 258999999999999999999999998643332211000000112356665554322111 111111
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch----hHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCc
Q 012314 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG----WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGI 156 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~----~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (466)
....+ .........+.. +. .+||+|++..... .+..++...++|++.............
T Consensus 79 ~~~~~-~~~~~~~~~~~~--~~---~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~----------- 141 (394)
T cd03794 79 LLNYL-SFALSALLALLK--RR---RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVA----------- 141 (394)
T ss_pred HHhhh-HHHHHHHHHHHh--cc---cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHH-----------
Confidence 11111 111111112211 12 7899999996211 344556667999988654321100000
Q ss_pred cCCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHh-hhccccEEEEcChhhccHHH-Hhh-cCCc
Q 012314 157 IDSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTR-AMIAVNFHFCNSTYELESEA-FTT-FPEL 233 (466)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vl~~s~~~le~~~-~~~-~p~v 233 (466)
....... .....+...... ....+|.+++.+....+.-. ... ..++
T Consensus 142 -----------------------------~~~~~~~--~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~ 190 (394)
T cd03794 142 -----------------------------LGLLKNG--SLLYRLLRKLERLIYRRADAIVVISPGMREYLVRRGVPPEKI 190 (394)
T ss_pred -----------------------------ccCcccc--chHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCCcCce
Confidence 0000000 000111111111 23678888888876655431 011 1244
Q ss_pred ceeccccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHh---C-CCCEEEEEcCCC
Q 012314 234 LPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLEL---C-KRPFLWVVRPDI 309 (466)
Q Consensus 234 ~~VGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~-~~~~i~~~~~~~ 309 (466)
..+........... ........... ..+++.+++..|+... ......+++++.. . +.++++ ++..
T Consensus 191 ~~i~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~i~~~G~~~~--~k~~~~l~~~~~~l~~~~~~~l~i-~G~~- 259 (394)
T cd03794 191 SVIPNGVDLELFKP-----PPADESLRKEL--GLDDKFVVLYAGNIGR--AQGLDTLLEAAALLKDRPDIRFLI-VGDG- 259 (394)
T ss_pred EEcCCCCCHHHcCC-----ccchhhhhhcc--CCCCcEEEEEecCccc--ccCHHHHHHHHHHHhhcCCeEEEE-eCCc-
Confidence 44432222111100 00000000111 1224467777787532 2223334444432 2 344443 3433
Q ss_pred CCCCCCCCchhHHH----HhcCCceeecccchh---hhhcCCCcccceeccC---------CchhhhhhhcCcceeeccc
Q 012314 310 TTDANDRYPEGFQE----RVAARGQMISWAPQL---RVLNHPSIACFLSHCG---------WNSTMEGVSNGIPFLCWPY 373 (466)
Q Consensus 310 ~~~~~~~~~~~~~~----~~~~n~~~~~~~p~~---~ll~~~~~~~~i~hgG---------~~s~~eal~~GvP~l~~P~ 373 (466)
...+.+.+ ...+|+.+.+++|+. .++..+++ +|.... .+++.||+++|+|+|+.+.
T Consensus 260 ------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~ 331 (394)
T cd03794 260 ------PEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVD 331 (394)
T ss_pred ------ccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecC
Confidence 11122222 234788888999865 46767776 664322 2347999999999999976
Q ss_pred ccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHH
Q 012314 374 FGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALEL 427 (466)
Q Consensus 374 ~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~ 427 (466)
.+.+. .+.+ .+.|..++. -+.++++++|.+++.|++.+++..+-
T Consensus 332 ~~~~~----~~~~-~~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~ 375 (394)
T cd03794 332 GESAE----LVEE-AGAGLVVPP-----GDPEALAAAILELLDDPEERAEMGEN 375 (394)
T ss_pred CCchh----hhcc-CCcceEeCC-----CCHHHHHHHHHHHHhChHHHHHHHHH
Confidence 55433 3444 267887743 37899999999999888766554433
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.34 E-value=1.5e-09 Score=105.20 Aligned_cols=112 Identities=11% Similarity=0.064 Sum_probs=73.8
Q ss_pred CCceeecccch-hhhhcCCCccccee----ccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCC
Q 012314 327 ARGQMISWAPQ-LRVLNHPSIACFLS----HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 401 (466)
Q Consensus 327 ~n~~~~~~~p~-~~ll~~~~~~~~i~----hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~ 401 (466)
+++.+.++.+. ..++..+++ +|. -|...++.||+++|+|+|+. |....+..+.+. ..|..+++
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s----~~~~~~e~i~~~-~~G~~~~~----- 320 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVAS----NAGGIPEVVKHG-ETGFLVDV----- 320 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEe----CCCCchhhhcCC-CceEEcCC-----
Confidence 56777787765 358877776 662 23456999999999999997 444566667663 67877743
Q ss_pred cCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012314 402 ITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 453 (466)
Q Consensus 402 ~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 453 (466)
-+.+++++++.++++|++.+++..+-+... +.+.-+....++++.+.+.
T Consensus 321 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~---~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 321 GDVEAMAEYALSLLEDDELWQEFSRAARNR---AAERFDSERIVPQYEALYR 369 (371)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHH
Confidence 478999999999998876655443333322 1124455555555555443
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.33 E-value=3.1e-09 Score=102.09 Aligned_cols=314 Identities=15% Similarity=0.093 Sum_probs=168.8
Q ss_pred ccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHH
Q 012314 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKL 93 (466)
Q Consensus 14 ~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (466)
.|+...+..+++.|.+.||+|++++............ ........ .. ..... ...........+
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~-------~~~~~~~~-----~~-~~~~~---~~~~~~~~~~~~ 77 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV-------GGIVVVRP-----PP-LLRVR---RLLLLLLLALRL 77 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee-------cCcceecC-----Cc-ccccc---hhHHHHHHHHHH
Confidence 6889999999999999999999999975543221110 00000000 00 00000 000111112233
Q ss_pred HHHHHHHhcCCCCCccEEEeCCCchhHH--HHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCCCCCccccccc
Q 012314 94 EELIEEINSREDEKIDCFIADGNIGWSM--EIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGTPMSMQMFRI 171 (466)
Q Consensus 94 ~~ll~~l~~~~~~~~DlvV~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 171 (466)
..+++. .++|+|+......... ..+...++|++...........
T Consensus 78 ~~~~~~------~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~---------------------------- 123 (374)
T cd03801 78 RRLLRR------ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP---------------------------- 123 (374)
T ss_pred HHHhhh------cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc----------------------------
Confidence 444444 7899999997655333 4778889999886543321000
Q ss_pred cCCCCCCCcccccccccCCCCchhHHHHHHHHH-HhhhccccEEEEcChhhccHHHHhhcC---CcceeccccCCCCCCC
Q 012314 172 APKMPEMNSRDCFWAHIGDWTSQKIFFDLLERN-TRAMIAVNFHFCNSTYELESEAFTTFP---ELLPIGPLLASNRLGN 247 (466)
Q Consensus 172 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vl~~s~~~le~~~~~~~p---~v~~VGpl~~~~~~~~ 247 (466)
. .. ........... ......++.+++.+....+.-...... ++..+..-.......
T Consensus 124 ------------~-~~------~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 183 (374)
T cd03801 124 ------------G-NE------LGLLLKLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFR- 183 (374)
T ss_pred ------------c-cc------hhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccC-
Confidence 0 00 00111111111 123467889999887766654222222 455554322221110
Q ss_pred CCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCC-----CCEEEEEcCCCCCCCCCCCchhHH
Q 012314 248 TAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCK-----RPFLWVVRPDITTDANDRYPEGFQ 322 (466)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~ 322 (466)
+.......-. ....+..+++.+|+.. .......+++++.... .++++ ++.. .....+.
T Consensus 184 ------~~~~~~~~~~-~~~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i-~G~~-------~~~~~~~ 246 (374)
T cd03801 184 ------PAPRAARRRL-GIPEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVI-VGDG-------PLREELE 246 (374)
T ss_pred ------ccchHHHhhc-CCcCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEE-EeCc-------HHHHHHH
Confidence 0000000011 1122346667777653 2333445555553322 33333 3322 1112222
Q ss_pred H-----HhcCCceeecccchh---hhhcCCCccccee----ccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhc
Q 012314 323 E-----RVAARGQMISWAPQL---RVLNHPSIACFLS----HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKV 390 (466)
Q Consensus 323 ~-----~~~~n~~~~~~~p~~---~ll~~~~~~~~i~----hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~ 390 (466)
+ ...+++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ......+.+. +.
T Consensus 247 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~ 319 (374)
T cd03801 247 ALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ET 319 (374)
T ss_pred HHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cc
Confidence 1 135788888999754 47877776 663 3456789999999999998754 5566677653 78
Q ss_pred eeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHH
Q 012314 391 GLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALE 426 (466)
Q Consensus 391 G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~ 426 (466)
|..++. .+.+++.++|.+++.|++.+++..+
T Consensus 320 g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~ 350 (374)
T cd03801 320 GLLVPP-----GDPEALAEAILRLLDDPELRRRLGE 350 (374)
T ss_pred eEEeCC-----CCHHHHHHHHHHHHcChHHHHHHHH
Confidence 888853 4589999999999998876654443
No 54
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.32 E-value=2.8e-09 Score=105.20 Aligned_cols=84 Identities=13% Similarity=0.109 Sum_probs=61.9
Q ss_pred hhhcCCCccccee-----ccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHH
Q 012314 339 RVLNHPSIACFLS-----HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQ 413 (466)
Q Consensus 339 ~ll~~~~~~~~i~-----hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ 413 (466)
.++..+++ ++. -+|..++.||+++|+|+|+.|...++......+.+. |.++... +.++|+++|.+
T Consensus 315 ~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~-------d~~~La~~l~~ 384 (425)
T PRK05749 315 LLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVE-------DAEDLAKAVTY 384 (425)
T ss_pred HHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEEC-------CHHHHHHHHHH
Confidence 57766775 332 134446899999999999999988888888777663 7666542 58999999999
Q ss_pred HhcCHHHHHHHHHHHHHHH
Q 012314 414 VLGNQDFKARALELKEKAM 432 (466)
Q Consensus 414 ll~~~~~r~~a~~~~~~~~ 432 (466)
+++|++.+++..+-+.+..
T Consensus 385 ll~~~~~~~~m~~~a~~~~ 403 (425)
T PRK05749 385 LLTDPDARQAYGEAGVAFL 403 (425)
T ss_pred HhcCHHHHHHHHHHHHHHH
Confidence 9999877765554444433
No 55
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.31 E-value=6.3e-09 Score=99.65 Aligned_cols=321 Identities=12% Similarity=0.071 Sum_probs=167.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
||++++....|+...+..++++|.++||+|++++......... ...+++.+.++...... ........
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~----~~~~~~~~ 68 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEEL--------EALGVKVIPIPLDRRGI----NPFKDLKA 68 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccc--------ccCCceEEecccccccc----ChHhHHHH
Confidence 5788887778999999999999999999999999876544211 11356666665322111 11111111
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch--hHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCCC
Q 012314 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGT 162 (466)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (466)
...+.++++. .+||+|++..... .+..++...+.|.+++.......
T Consensus 69 -----~~~~~~~~~~------~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------- 116 (359)
T cd03808 69 -----LLRLYRLLRK------ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGF--------------------- 116 (359)
T ss_pred -----HHHHHHHHHh------cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcch---------------------
Confidence 1123344444 7899999886443 23344443666655543211100
Q ss_pred CCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhc---CCcceeccc
Q 012314 163 PMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF---PELLPIGPL 239 (466)
Q Consensus 163 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~---p~v~~VGpl 239 (466)
....... .........+ .....+|.+++.+....+.-..... .....+.|.
T Consensus 117 -----------------------~~~~~~~-~~~~~~~~~~--~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~ 170 (359)
T cd03808 117 -----------------------VFTSGGL-KRRLYLLLER--LALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGS 170 (359)
T ss_pred -----------------------hhccchh-HHHHHHHHHH--HHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCC
Confidence 0000000 0011111111 1225668888888766554312111 122222222
Q ss_pred cCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCC
Q 012314 240 LASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELC-----KRPFLWVVRPDITTDAN 314 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~ 314 (466)
..+.... .+... . ..+++.+++..|+... ......+++++..+ +.++++...+.. .
T Consensus 171 ~~~~~~~------~~~~~---~----~~~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~----~ 231 (359)
T cd03808 171 GVDLDRF------SPSPE---P----IPEDDPVFLFVARLLK--DKGIDELLEAARILKAKGPNVRLLLVGDGDE----E 231 (359)
T ss_pred CCChhhc------Ccccc---c----cCCCCcEEEEEecccc--ccCHHHHHHHHHHHHhcCCCeEEEEEcCCCc----c
Confidence 2211110 00000 0 1224477888887532 22334444444332 234443333221 0
Q ss_pred CCCchhHHHH--hcCCceeecccch-hhhhcCCCcccceecc----CCchhhhhhhcCcceeecccccchhhhHHHHHHh
Q 012314 315 DRYPEGFQER--VAARGQMISWAPQ-LRVLNHPSIACFLSHC----GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDF 387 (466)
Q Consensus 315 ~~~~~~~~~~--~~~n~~~~~~~p~-~~ll~~~~~~~~i~hg----G~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~ 387 (466)
.........+ ..+++.+.++..+ ..++..+++ +|.-. ..+++.||+++|+|+|+.+.. .....+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~ 305 (359)
T cd03808 232 NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG 305 (359)
T ss_pred hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC
Confidence 1010000111 2356777777554 358877777 66533 257899999999999987543 345556653
Q ss_pred hhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHH
Q 012314 388 WKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALE 426 (466)
Q Consensus 388 ~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~ 426 (466)
+.|..++ .-+.+++.++|.+++.|++.+++..+
T Consensus 306 -~~g~~~~-----~~~~~~~~~~i~~l~~~~~~~~~~~~ 338 (359)
T cd03808 306 -VNGFLVP-----PGDAEALADAIERLIEDPELRARMGQ 338 (359)
T ss_pred -cceEEEC-----CCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 7788874 34789999999999988866554433
No 56
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.31 E-value=2.2e-09 Score=105.09 Aligned_cols=333 Identities=14% Similarity=0.107 Sum_probs=167.8
Q ss_pred ccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHH
Q 012314 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKL 93 (466)
Q Consensus 14 ~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (466)
.|.-..+..++++|+++||+|++++.......... .....++.++.++................ ....
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 88 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPI-----VELAPGVRVVRVPAGPAEYLPKEELWPYL-------DEFA 88 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCc-----cccccceEEEecccccccCCChhhcchhH-------HHHH
Confidence 47888999999999999999999997543221110 01124666666553111110000011111 1122
Q ss_pred HHHHHHHhcCCCCCccEEEeCCCch--hHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCCCCCccccccc
Q 012314 94 EELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGTPMSMQMFRI 171 (466)
Q Consensus 94 ~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 171 (466)
..+++.++... .+||+|++..... .+..+++.+++|++...+.... .. .
T Consensus 89 ~~~~~~~~~~~-~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~---------------------~~--~----- 139 (398)
T cd03800 89 DDLLRFLRREG-GRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGA---------------------VK--R----- 139 (398)
T ss_pred HHHHHHHHhcC-CCccEEEEecCccchHHHHHHhhcCCceEEEeecccc---------------------cC--C-----
Confidence 33333333311 2899999875332 4666788899998875431110 00 0
Q ss_pred cCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhc---CCcceeccccCCCCCCCC
Q 012314 172 APKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF---PELLPIGPLLASNRLGNT 248 (466)
Q Consensus 172 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~---p~v~~VGpl~~~~~~~~~ 248 (466)
. ... . .... . ..............+|.+++.|....+.-..... .++..|.+-.......
T Consensus 140 -~--------~~~-~---~~~~-~-~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~-- 202 (398)
T cd03800 140 -R--------HLG-A---ADTY-E-PARRIEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFT-- 202 (398)
T ss_pred -c--------ccc-c---cccc-c-hhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECCCCCcccee--
Confidence 0 000 0 0000 0 0000000111346788999888765433212111 1244443222211100
Q ss_pred CCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCCCCCch---h
Q 012314 249 AGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELC-----KRPFLWVVRPDITTDANDRYPE---G 320 (466)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~---~ 320 (466)
...............+ ...+++..|+... ......+++++..+ +.+++++.++..... ..... .
T Consensus 203 ---~~~~~~~~~~~~~~~~-~~~~i~~~gr~~~--~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~--~~~~~~~~~ 274 (398)
T cd03800 203 ---PYGRAEARRARLLRDP-DKPRILAVGRLDP--RKGIDTLIRAYAELPELRERANLVIVGGPRDDIL--AMDEEELRE 274 (398)
T ss_pred ---cccchhhHHHhhccCC-CCcEEEEEccccc--ccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcch--hhhhHHHHH
Confidence 0000000011111122 3366677787532 22334444554332 345555554331100 00001 1
Q ss_pred HHHHh--cCCceeecccchhh---hhcCCCcccceec----cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhce
Q 012314 321 FQERV--AARGQMISWAPQLR---VLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVG 391 (466)
Q Consensus 321 ~~~~~--~~n~~~~~~~p~~~---ll~~~~~~~~i~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G 391 (466)
+.+.. .+|+.+.+|+|+.+ ++..+++ ++.. |-..++.||+++|+|+|+... ......+++. +.|
T Consensus 275 ~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i~~~-~~g 347 (398)
T cd03800 275 LARELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIVVDG-VTG 347 (398)
T ss_pred HHHhcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHccCC-CCe
Confidence 11111 36788889999764 5777776 7643 224689999999999998753 3455667663 789
Q ss_pred eEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHH
Q 012314 392 LKFDRDEGGIITREEIKNKVDQVLGNQDFKARA 424 (466)
Q Consensus 392 ~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a 424 (466)
..++. -+.++++++|.++++|++.+++.
T Consensus 348 ~~~~~-----~~~~~l~~~i~~l~~~~~~~~~~ 375 (398)
T cd03800 348 LLVDP-----RDPEALAAALRRLLTDPALRRRL 375 (398)
T ss_pred EEeCC-----CCHHHHHHHHHHHHhCHHHHHHH
Confidence 88853 36999999999999887655433
No 57
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.28 E-value=4.5e-10 Score=108.55 Aligned_cols=137 Identities=12% Similarity=0.113 Sum_probs=84.9
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCCCCCchhHHHHh--cCCceeecccchh---
Q 012314 269 SSVVYVSFGSFTILDQVQFQELALGLELC-----KRPFLWVVRPDITTDANDRYPEGFQERV--AARGQMISWAPQL--- 338 (466)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~n~~~~~~~p~~--- 338 (466)
+..++++.+-... ..+.+..+++++..+ +.++++...++ ......+.+.. .+++.+.+.+++.
T Consensus 197 ~~~vl~~~hr~~~-~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 269 (365)
T TIGR00236 197 KRYILLTLHRREN-VGEPLENIFKAIREIVEEFEDVQIVYPVHLN------PVVREPLHKHLGDSKRVHLIEPLEYLDFL 269 (365)
T ss_pred CCEEEEecCchhh-hhhHHHHHHHHHHHHHHHCCCCEEEEECCCC------hHHHHHHHHHhCCCCCEEEECCCChHHHH
Confidence 3466665543211 123466677776543 34556554332 11122222222 3577777766643
Q ss_pred hhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 339 RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 339 ~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
.++.++++ +|+..|.. +.||+++|+|+|.++..++++. +.+. |.+..+. .++++|.+++.++++|+
T Consensus 270 ~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~------~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 270 NLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG------TDKENITKAAKRLLTDP 335 (365)
T ss_pred HHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC------CCHHHHHHHHHHHHhCh
Confidence 56766666 89877644 7999999999999876555543 2233 7776663 27899999999999988
Q ss_pred HHHHHHHH
Q 012314 419 DFKARALE 426 (466)
Q Consensus 419 ~~r~~a~~ 426 (466)
+.+++...
T Consensus 336 ~~~~~~~~ 343 (365)
T TIGR00236 336 DEYKKMSN 343 (365)
T ss_pred HHHHHhhh
Confidence 77776543
No 58
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.26 E-value=5.5e-09 Score=100.83 Aligned_cols=83 Identities=14% Similarity=0.246 Sum_probs=62.1
Q ss_pred cCCceeecccchhh---hhcCCCcccceec----cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCC
Q 012314 326 AARGQMISWAPQLR---VLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 398 (466)
Q Consensus 326 ~~n~~~~~~~p~~~---ll~~~~~~~~i~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 398 (466)
.+++.+.+++|+.+ ++..+++ +|.. +...++.||+++|+|+|+.. ....+..+.+. +.|..++.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~-~~g~~~~~-- 328 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADG-ENGFLFPP-- 328 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecC-ceeEEeCC--
Confidence 46788889998754 6777777 6633 33478999999999999874 45566777763 78888853
Q ss_pred CCCcCHHHHHHHHHHHhcCHHHH
Q 012314 399 GGIITREEIKNKVDQVLGNQDFK 421 (466)
Q Consensus 399 ~~~~~~~~l~~~i~~ll~~~~~r 421 (466)
. +. ++.+++.+++++++.+
T Consensus 329 -~--~~-~~~~~i~~l~~~~~~~ 347 (374)
T cd03817 329 -G--DE-ALAEALLRLLQDPELR 347 (374)
T ss_pred -C--CH-HHHHHHHHHHhChHHH
Confidence 2 22 8999999999887654
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.25 E-value=1.2e-08 Score=97.33 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=64.4
Q ss_pred CCceeecccch-hhhhcCCCcccceecc----CCchhhhhhhcCcceeecccccchhhhHHHHHHhhh-ceeEeecCCCC
Q 012314 327 ARGQMISWAPQ-LRVLNHPSIACFLSHC----GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWK-VGLKFDRDEGG 400 (466)
Q Consensus 327 ~n~~~~~~~p~-~~ll~~~~~~~~i~hg----G~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G-~G~~l~~~~~~ 400 (466)
.++.+.++... ..++..+++ +|.-. ..+++.||+++|+|+|+.+..+.+.. +.+. | .|..++
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~~-~~~g~~~~----- 302 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIED-GVNGLLVP----- 302 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhcc-CcceEEeC-----
Confidence 45666666333 458877776 66543 24689999999999998865443332 3332 5 888884
Q ss_pred CcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 012314 401 IITREEIKNKVDQVLGNQDFKARALELKEKAM 432 (466)
Q Consensus 401 ~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~ 432 (466)
.-+.+++.++|.++++|++.++++.+-++.+.
T Consensus 303 ~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~ 334 (348)
T cd03820 303 NGDVEALAEALLRLMEDEELRKRMGANARESA 334 (348)
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 34689999999999999987776655444333
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.23 E-value=1.1e-08 Score=98.85 Aligned_cols=112 Identities=12% Similarity=0.055 Sum_probs=71.7
Q ss_pred cCCceeecccc-hh---hhhcCCCcccceec----cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecC
Q 012314 326 AARGQMISWAP-QL---RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD 397 (466)
Q Consensus 326 ~~n~~~~~~~p-~~---~ll~~~~~~~~i~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~ 397 (466)
..++.+.+|++ +. .++..+++ +|.- |..+++.||+++|+|+|+... ......+.+. +.|..++
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~-- 313 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAK-- 313 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeC--
Confidence 45677789998 43 46877776 7764 335789999999999998743 3444445552 5777774
Q ss_pred CCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 012314 398 EGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 452 (466)
Q Consensus 398 ~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~ 452 (466)
..+.+++.+++.++++|++.+++..+ ..++.+.+.-+.....+++++-+
T Consensus 314 ---~~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~y 362 (365)
T cd03825 314 ---PGDPEDLAEGIEWLLADPDEREELGE---AARELAENEFDSRVQAKRYLSLY 362 (365)
T ss_pred ---CCCHHHHHHHHHHHHhCHHHHHHHHH---HHHHHHHHhcCHHHHHHHHHHHH
Confidence 35789999999999988864443332 22222222344444555555444
No 61
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.22 E-value=1.9e-08 Score=98.31 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=61.9
Q ss_pred cCCceeecccchh---hhhcCCCcccceec---cC-CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCC
Q 012314 326 AARGQMISWAPQL---RVLNHPSIACFLSH---CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 398 (466)
Q Consensus 326 ~~n~~~~~~~p~~---~ll~~~~~~~~i~h---gG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 398 (466)
.+++.+.+++|.. .++..+++ ++.. -| ..++.||+++|+|+|+.-. ......+.+. +.|....
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~-~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDG-ETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccC-CceEEeC---
Confidence 3678888999976 46777777 5532 22 3577999999999999743 3344556653 6787763
Q ss_pred CCCcCHHHHHHHHHHHhcCHHHHHHH
Q 012314 399 GGIITREEIKNKVDQVLGNQDFKARA 424 (466)
Q Consensus 399 ~~~~~~~~l~~~i~~ll~~~~~r~~a 424 (466)
. +.++++++|.+++++++.+++.
T Consensus 349 --~-~~~~~a~~i~~l~~~~~~~~~~ 371 (392)
T cd03805 349 --P-TPEEFAEAMLKLANDPDLADRM 371 (392)
T ss_pred --C-CHHHHHHHHHHHHhChHHHHHH
Confidence 2 6899999999999988655443
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.22 E-value=2.3e-08 Score=96.28 Aligned_cols=314 Identities=15% Similarity=0.048 Sum_probs=161.6
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCC-CCCccHHHHHHHHHHhccH
Q 012314 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPW-EDRNDLGKLIEKCLQVMPG 91 (466)
Q Consensus 13 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 91 (466)
..|+......+++.|.+.||+|++++............ ............... ........... ....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 81 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLL-------KGRLVGVERLPVLLPVVPLLKGPLLYL----LAAR 81 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhc-------ccccccccccccCcchhhccccchhHH----HHHH
Confidence 47888899999999999999999999875443322210 000000000000000 00000000111 1112
Q ss_pred HHHHHHHHHhcCCCCCccEEEeCCCch---hHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCCCCCcccc
Q 012314 92 KLEELIEEINSREDEKIDCFIADGNIG---WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGTPMSMQM 168 (466)
Q Consensus 92 ~~~~ll~~l~~~~~~~~DlvV~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 168 (466)
.+..+++. .. .++|+|++..... .+..+++..++|++........
T Consensus 82 ~~~~~l~~-~~---~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~---------------------------- 129 (377)
T cd03798 82 ALLKLLKL-KR---FRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDV---------------------------- 129 (377)
T ss_pred HHHHHHhc-cc---CCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchh----------------------------
Confidence 23334431 02 7899999886443 3445667778898875532221
Q ss_pred ccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHh--hcCCcceeccccCCCCCC
Q 012314 169 FRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFT--TFPELLPIGPLLASNRLG 246 (466)
Q Consensus 169 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~--~~p~v~~VGpl~~~~~~~ 246 (466)
....... ...... ......++.+++.+...-+.-..- ...++..++.........
T Consensus 130 -----------------~~~~~~~---~~~~~~---~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 186 (377)
T cd03798 130 -----------------NLLPRKR---LLRALL---RRALRRADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFS 186 (377)
T ss_pred -----------------cccCchh---hHHHHH---HHHHhcCCeEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCC
Confidence 0000000 001111 113467888888887665543221 123455554333222111
Q ss_pred CCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCCCCCchhHHH
Q 012314 247 NTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELC---KRPFLWVVRPDITTDANDRYPEGFQE 323 (466)
Q Consensus 247 ~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~ 323 (466)
+....-..-.. ...+..+++..|+... ......+++++... +..+.+.+.+.. ...+.+.+
T Consensus 187 -------~~~~~~~~~~~-~~~~~~~i~~~g~~~~--~k~~~~li~~~~~~~~~~~~~~l~i~g~~------~~~~~~~~ 250 (377)
T cd03798 187 -------PADRAEARKLG-LPEDKKVILFVGRLVP--RKGIDYLIEALARLLKKRPDVHLVIVGDG------PLREALEA 250 (377)
T ss_pred -------CcchHHHHhcc-CCCCceEEEEeccCcc--ccCHHHHHHHHHHHHhcCCCeEEEEEcCC------cchHHHHH
Confidence 00000000011 1223467777787532 22334444444332 234433333220 11122222
Q ss_pred H-----hcCCceeecccchh---hhhcCCCccccee----ccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhce
Q 012314 324 R-----VAARGQMISWAPQL---RVLNHPSIACFLS----HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVG 391 (466)
Q Consensus 324 ~-----~~~n~~~~~~~p~~---~ll~~~~~~~~i~----hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G 391 (466)
. ..+|+.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ......+.+ .+.|
T Consensus 251 ~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~-~~~g 323 (377)
T cd03798 251 LAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITD-GENG 323 (377)
T ss_pred HHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcC-Ccce
Confidence 2 24688888999875 46766776 552 3456788999999999998754 345556666 3667
Q ss_pred eEeecCCCCCcCHHHHHHHHHHHhcCHHH
Q 012314 392 LKFDRDEGGIITREEIKNKVDQVLGNQDF 420 (466)
Q Consensus 392 ~~l~~~~~~~~~~~~l~~~i~~ll~~~~~ 420 (466)
...+ .-+.+++.++|.++++++..
T Consensus 324 ~~~~-----~~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 324 LLVP-----PGDPEALAEAILRLLADPWL 347 (377)
T ss_pred eEEC-----CCCHHHHHHHHHHHhcCcHH
Confidence 7774 35799999999999988764
No 63
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.21 E-value=3.4e-08 Score=97.24 Aligned_cols=163 Identities=7% Similarity=0.060 Sum_probs=95.8
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhCC----CCEEEEEcCCCCCCCCCCCchhHHHH----hcCCceeecccchh---
Q 012314 270 SVVYVSFGSFTILDQVQFQELALGLELCK----RPFLWVVRPDITTDANDRYPEGFQER----VAARGQMISWAPQL--- 338 (466)
Q Consensus 270 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~n~~~~~~~p~~--- 338 (466)
..+++..|+.. +...+..+++++..+. .+++ .+|.+ ...+.+.+. ..+|+.+.+|+|+.
T Consensus 229 ~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~-ivG~g-------~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~ 298 (412)
T PRK10307 229 KKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFV-ICGQG-------GGKARLEKMAQCRGLPNVHFLPLQPYDRLP 298 (412)
T ss_pred CEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEE-EECCC-------hhHHHHHHHHHHcCCCceEEeCCCCHHHHH
Confidence 35666677653 3344555666665432 3333 34433 122333221 12578888999865
Q ss_pred hhhcCCCcccceeccCC------chhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHH
Q 012314 339 RVLNHPSIACFLSHCGW------NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVD 412 (466)
Q Consensus 339 ~ll~~~~~~~~i~hgG~------~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~ 412 (466)
.+++.+++-++.+..+. +.+.|++++|+|+|+....+. .....+ + +.|..+++ -+.++|+++|.
T Consensus 299 ~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~-----~d~~~la~~i~ 368 (412)
T PRK10307 299 ALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEP-----ESVEALVAAIA 368 (412)
T ss_pred HHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCC-----CCHHHHHHHHH
Confidence 47878887444444332 236899999999999864331 112222 2 67888743 46899999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012314 413 QVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 455 (466)
Q Consensus 413 ~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~ 455 (466)
++++|++.+++.. +..++.+.+.-+....++++++.+.+.
T Consensus 369 ~l~~~~~~~~~~~---~~a~~~~~~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 369 ALARQALLRPKLG---TVAREYAERTLDKENVLRQFIADIRGL 408 (412)
T ss_pred HHHhCHHHHHHHH---HHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 9998876655433 333333333556666666666666544
No 64
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.19 E-value=5e-08 Score=95.84 Aligned_cols=112 Identities=15% Similarity=0.077 Sum_probs=74.8
Q ss_pred CCceeecccchh---hhhcCCCccccee---ccC-CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCC
Q 012314 327 ARGQMISWAPQL---RVLNHPSIACFLS---HCG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEG 399 (466)
Q Consensus 327 ~n~~~~~~~p~~---~ll~~~~~~~~i~---hgG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~ 399 (466)
+++.+.+++|+. ++|..+++ +|. +.| ..++.||+++|+|+|+.. .......+.+. +.|..++
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~----~~~~~e~i~~~-~~g~~~~---- 351 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAAR----VGGLPVAVADG-ETGLLVD---- 351 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEec----CCCcHhhhccC-CceEECC----
Confidence 578888999864 57877777 663 233 358999999999999974 34455566663 6788774
Q ss_pred CCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012314 400 GIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKT 454 (466)
Q Consensus 400 ~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~ 454 (466)
.-+.++++++|.+++++++.++++..-+....+ .-+-....+++++.+..
T Consensus 352 -~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~----~fsw~~~~~~~~~~y~~ 401 (405)
T TIGR03449 352 -GHDPADWADALARLLDDPRTRIRMGAAAVEHAA----GFSWAATADGLLSSYRD 401 (405)
T ss_pred -CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 347899999999999987766555444333322 33434444555544443
No 65
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.18 E-value=3.6e-08 Score=94.88 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=87.8
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCCCCCchhHHH-----HhcCCceeecccchh---hh
Q 012314 270 SVVYVSFGSFTILDQVQFQELALGLELCK-RPFLWVVRPDITTDANDRYPEGFQE-----RVAARGQMISWAPQL---RV 340 (466)
Q Consensus 270 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~n~~~~~~~p~~---~l 340 (466)
..+++..|+.. +......+++++.++. .++++...+. ..+.+.+ ...+|+.+.+|+|+. .+
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~ 260 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP--------LEAELEALAAALGLLDRVRFLGRLDDEEKAAL 260 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh--------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHH
Confidence 36677778653 3345667778887776 4444443222 1122222 124789999999974 47
Q ss_pred hcCCCccccee---ccCC-chhhhhhhcCcceeecccccchhhhHHHHHH-hhhceeEeecCCCCCcCHHHHHHHHHHHh
Q 012314 341 LNHPSIACFLS---HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICD-FWKVGLKFDRDEGGIITREEIKNKVDQVL 415 (466)
Q Consensus 341 l~~~~~~~~i~---hgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~-~~G~G~~l~~~~~~~~~~~~l~~~i~~ll 415 (466)
+..+++-++.+ +.|. .++.||+++|+|+|+....+.. ..+.+ . +.|..++ .-+.+++.++|.+++
T Consensus 261 ~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~-~~g~~~~-----~~d~~~~~~~i~~l~ 330 (357)
T cd03795 261 LAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHG-VTGLVVP-----PGDPAALAEAIRRLL 330 (357)
T ss_pred HHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCC-CceEEeC-----CCCHHHHHHHHHHHH
Confidence 77677733333 2343 4789999999999998544443 33332 3 7788774 347999999999999
Q ss_pred cCHHHHHHHHH
Q 012314 416 GNQDFKARALE 426 (466)
Q Consensus 416 ~~~~~r~~a~~ 426 (466)
+|++.+++..+
T Consensus 331 ~~~~~~~~~~~ 341 (357)
T cd03795 331 EDPELRERLGE 341 (357)
T ss_pred HCHHHHHHHHH
Confidence 99866554443
No 66
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.16 E-value=2.9e-09 Score=102.94 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=86.4
Q ss_pred CeEEEEEecccccc-CHHHHHHHHHHHHhCCC-CEEEEEcCCCCCCCCCCCchhHHHH---h---cCCceeecccchh--
Q 012314 269 SSVVYVSFGSFTIL-DQVQFQELALGLELCKR-PFLWVVRPDITTDANDRYPEGFQER---V---AARGQMISWAPQL-- 338 (466)
Q Consensus 269 ~~~v~vs~Gs~~~~-~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~---~---~~n~~~~~~~p~~-- 338 (466)
++.+++++|..... ..+.+..+++++..+.. ++.+++.++ +...+.+.+. . .+++.+.++.++.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~------~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH------PRTRPRIREAGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC------CChHHHHHHHHHhhccCCCCEEEECCcCHHHH
Confidence 55788888765322 45667788888866543 244444333 1112233221 2 3577777655543
Q ss_pred -hhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcC
Q 012314 339 -RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 417 (466)
Q Consensus 339 -~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 417 (466)
.++..+++ ||+..| |.+.||++.|+|+|+++.. |. +..+.+ .|++..+. -+.++|.++|.+++++
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~-~g~~~~~~------~~~~~i~~~i~~ll~~ 337 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVE-SGTNVLVG------TDPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhh-eeeEEecC------CCHHHHHHHHHHHhcC
Confidence 46766666 999998 7788999999999998643 22 223344 37766652 1589999999999988
Q ss_pred HHHHHHH
Q 012314 418 QDFKARA 424 (466)
Q Consensus 418 ~~~r~~a 424 (466)
+..+++.
T Consensus 338 ~~~~~~~ 344 (363)
T cd03786 338 EFAYSLM 344 (363)
T ss_pred chhhhcC
Confidence 7655543
No 67
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.11 E-value=2.9e-07 Score=88.68 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=62.6
Q ss_pred cCCceeecccchh---hhhcCCCcccceec---cC-CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCC
Q 012314 326 AARGQMISWAPQL---RVLNHPSIACFLSH---CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 398 (466)
Q Consensus 326 ~~n~~~~~~~p~~---~ll~~~~~~~~i~h---gG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 398 (466)
.+++.+.+|+++. .++..+++ +|.- .| .+++.||+++|+|+|+.+ .......+.+ +.|.....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~----~~~~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTD----KVPWQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcC----CCCHHHHhhc--CceEEeCC--
Confidence 4678888999964 36777777 5542 22 468899999999999975 3445555543 77777742
Q ss_pred CCCcCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 012314 399 GGIITREEIKNKVDQVLGNQDFKARALELK 428 (466)
Q Consensus 399 ~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~ 428 (466)
+.+++.++|.+++++++.+++..+-+
T Consensus 331 ----~~~~~~~~i~~l~~~~~~~~~~~~~~ 356 (375)
T cd03821 331 ----DVDALAAALRRALELPQRLKAMGENG 356 (375)
T ss_pred ----ChHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 34999999999999875555444333
No 68
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.10 E-value=6.5e-08 Score=93.58 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=64.7
Q ss_pred cCCceeecccchh---hhhcCCCcccceec----------cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhcee
Q 012314 326 AARGQMISWAPQL---RVLNHPSIACFLSH----------CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGL 392 (466)
Q Consensus 326 ~~n~~~~~~~p~~---~ll~~~~~~~~i~h----------gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~ 392 (466)
.+++.+.+++|+. .+++.+++ +|.- |..+++.||+++|+|+|+.+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 4677788999865 46877777 5532 2357899999999999988654 356666663 7888
Q ss_pred EeecCCCCCcCHHHHHHHHHHHhcCHHHHHHH
Q 012314 393 KFDRDEGGIITREEIKNKVDQVLGNQDFKARA 424 (466)
Q Consensus 393 ~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a 424 (466)
.++ .-+.+++.++|.++++|++.+++.
T Consensus 317 ~~~-----~~d~~~l~~~i~~l~~~~~~~~~~ 343 (367)
T cd05844 317 LVP-----EGDVAALAAALGRLLADPDLRARM 343 (367)
T ss_pred EEC-----CCCHHHHHHHHHHHHcCHHHHHHH
Confidence 884 347899999999999988655543
No 69
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.07 E-value=2.5e-07 Score=97.17 Aligned_cols=389 Identities=11% Similarity=0.067 Sum_probs=195.6
Q ss_pred cCHHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHh-hh--------------cCCCCCCCeEEEecCCCCCCC-CCCc
Q 012314 15 GHVIPLLEFSQCLAKHG--FRVTFVNTDYNHKRVVES-LQ--------------GKNYLGEQIHLVSIPDGMEPW-EDRN 76 (466)
Q Consensus 15 GH~~p~l~la~~L~~rG--h~Vt~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~ 76 (466)
|+..=.+.||++|+++| |+|.++|-...-..+... .. ......++.+.+.+|-+-... -...
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke 275 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKYIPKE 275 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCCcCHH
Confidence 56666789999999998 999999986432211000 00 001123588888888654322 1233
Q ss_pred cHHHHHHHHHHhccHHHHHH----HHHHhcCCCCCccEEEeCCCch--hHHHHHHHcCCceEEeccchhHHHHHHhhccc
Q 012314 77 DLGKLIEKCLQVMPGKLEEL----IEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSSAASVALVFRIPK 150 (466)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l----l~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 150 (466)
.+...+..|...+...++++ .+.+.......||+|-+-+... .+..+++.+|||+|.+.++.........
T Consensus 276 ~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~HSLgr~K~~~l---- 351 (1050)
T TIGR02468 276 ELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRDKLEQL---- 351 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEECccchhhhhhhh----
Confidence 34555555554444443332 2222211113599999876443 6778999999999988765332100000
Q ss_pred ccccCccCCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhh-
Q 012314 151 LIDDGIIDSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTT- 229 (466)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~- 229 (466)
... +.. ...... ..+ .....+......+..++.++.+|..+.+.-..-+
T Consensus 352 -l~~-------------------g~~--~~~~~~-~~y-------~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~ 401 (1050)
T TIGR02468 352 -LKQ-------------------GRM--SKEEIN-STY-------KIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYD 401 (1050)
T ss_pred -ccc-------------------ccc--cccccc-ccc-------chHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhc
Confidence 000 000 000000 000 0001111111235789999999988876321110
Q ss_pred ------------------------cCCcceeccccC----CCCCCCCC-----------CCcccCCccchhhhccCCCCe
Q 012314 230 ------------------------FPELLPIGPLLA----SNRLGNTA-----------GYFWCEDSNCLKWLDQQQPSS 270 (466)
Q Consensus 230 ------------------------~p~v~~VGpl~~----~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~ 270 (466)
.+++..|.|=.. .+...... ....+...++..|+.. +++
T Consensus 402 ~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~-pdk- 479 (1050)
T TIGR02468 402 GFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMRFFTN-PRK- 479 (1050)
T ss_pred cCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHhhccc-CCC-
Confidence 123333322111 01000000 0000111234445543 333
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhCC-----CCEEEEEcCCCCCCCCC----CCchhHH---HHh--cCCceeecccc
Q 012314 271 VVYVSFGSFTILDQVQFQELALGLELCK-----RPFLWVVRPDITTDAND----RYPEGFQ---ERV--AARGQMISWAP 336 (466)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-----~~~i~~~~~~~~~~~~~----~~~~~~~---~~~--~~n~~~~~~~p 336 (466)
++++..|... +......+++|+..+. ..+.+++++..+..... .....+. ++. .+++.+.++++
T Consensus 480 pvIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~ 557 (1050)
T TIGR02468 480 PMILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHK 557 (1050)
T ss_pred cEEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCCC
Confidence 4556667642 3444566777775442 24544555431100000 0001121 122 35677778887
Q ss_pred hhh---hhcCCC--cccceec---cCC-chhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHH
Q 012314 337 QLR---VLNHPS--IACFLSH---CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEI 407 (466)
Q Consensus 337 ~~~---ll~~~~--~~~~i~h---gG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l 407 (466)
+.+ ++..++ .++||.- =|. .+++||+++|+|+|+.... .....+.. -.-|..+++ -+++.|
T Consensus 558 ~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~EII~~-g~nGlLVdP-----~D~eaL 627 (1050)
T TIGR02468 558 QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPVDIHRV-LDNGLLVDP-----HDQQAI 627 (1050)
T ss_pred HHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcHHHhcc-CCcEEEECC-----CCHHHH
Confidence 654 555442 1237663 343 5789999999999998543 34444544 256888854 478999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012314 408 KNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 455 (466)
Q Consensus 408 ~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~ 455 (466)
+++|.++++|++.++++.+-+.+... .-+-...+++.++.+...
T Consensus 628 A~AL~~LL~Dpelr~~m~~~gr~~v~----~FSWe~ia~~yl~~i~~~ 671 (1050)
T TIGR02468 628 ADALLKLVADKQLWAECRQNGLKNIH----LFSWPEHCKTYLSRIASC 671 (1050)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHH
Confidence 99999999998776665544333322 234455555555555544
No 70
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.05 E-value=5.2e-07 Score=89.38 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=61.1
Q ss_pred cCCceeecccchhh---hhcCC--Ccccceec----cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeec
Q 012314 326 AARGQMISWAPQLR---VLNHP--SIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 396 (466)
Q Consensus 326 ~~n~~~~~~~p~~~---ll~~~--~~~~~i~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~ 396 (466)
.+++.+.+++++.+ ++..+ ++++||.. |-..+++||+++|+|+|+.. .......+.+. ..|..+++
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~----~gg~~eiv~~~-~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATD----DGGPRDIIANC-RNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeC----CCCcHHHhcCC-CcEEEeCC
Confidence 35666777777654 45544 22347754 33468999999999999884 44455666552 57888753
Q ss_pred CCCCCcCHHHHHHHHHHHhcCHHHHHH
Q 012314 397 DEGGIITREEIKNKVDQVLGNQDFKAR 423 (466)
Q Consensus 397 ~~~~~~~~~~l~~~i~~ll~~~~~r~~ 423 (466)
-++++|+++|.++++|++.+++
T Consensus 391 -----~d~~~la~~i~~ll~~~~~~~~ 412 (439)
T TIGR02472 391 -----LDLEAIASALEDALSDSSQWQL 412 (439)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHH
Confidence 4789999999999998865543
No 71
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.04 E-value=3.5e-07 Score=89.59 Aligned_cols=114 Identities=15% Similarity=0.051 Sum_probs=72.8
Q ss_pred cCCceeecccchh---hhhcCCCccccee---ccCCc-hhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCC
Q 012314 326 AARGQMISWAPQL---RVLNHPSIACFLS---HCGWN-STMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 398 (466)
Q Consensus 326 ~~n~~~~~~~p~~---~ll~~~~~~~~i~---hgG~~-s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 398 (466)
.+++.+.+|+|+. .++..+++ +|. +-|.| ++.||+++|+|+|+.+..+ ....+.+ |.+....
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC---
Confidence 3567888999864 47767776 653 33443 8999999999999986542 3344443 5443332
Q ss_pred CCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Q 012314 399 GGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNA 456 (466)
Q Consensus 399 ~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~ 456 (466)
.+.+++.+++.+++++..-+. .+.+..+..+.+.-+-....+++++.+....
T Consensus 318 ---~~~~~l~~~l~~~l~~~~~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~ 369 (398)
T cd03796 318 ---PDVESIVRKLEEAISILRTGK---HDPWSFHNRVKKMYSWEDVAKRTEKVYDRIL 369 (398)
T ss_pred ---CCHHHHHHHHHHHHhChhhhh---hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 278999999999997643221 2223333333446666777777777766653
No 72
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.01 E-value=1.3e-07 Score=90.22 Aligned_cols=319 Identities=14% Similarity=0.108 Sum_probs=162.8
Q ss_pred EEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHH
Q 012314 5 RVLVMPAP--AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (466)
Q Consensus 5 ~il~~~~~--~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
||++++.. ..|+...+..++++|.+.||+|++++............ .......... ... .....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~-~~~~~---- 66 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLP-------SNVKLIPVRV--LKL-KSLRD---- 66 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccc-------cchhhhceee--eec-ccccc----
Confidence 45666644 56888899999999999999999999875443221110 0000000000 000 00000
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCC-ch-hHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCC
Q 012314 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIADGN-IG-WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSH 160 (466)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~-~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (466)
......+.++++. .++|+|++... .. ....++...++|.+............
T Consensus 67 ----~~~~~~~~~~~~~------~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------------- 120 (353)
T cd03811 67 ----LLAILRLRRLLRK------EKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLELK---------------- 120 (353)
T ss_pred ----hhHHHHHHHHHHh------cCCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchhhhc----------------
Confidence 0011234445554 68999999975 22 33334444478988765433220000
Q ss_pred CCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhc---CCcceec
Q 012314 161 GTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF---PELLPIG 237 (466)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~---p~v~~VG 237 (466)
... .. . .........++.+++.+...-+.-..... .++..+.
T Consensus 121 ---------------------~~~----------~~-~---~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ 165 (353)
T cd03811 121 ---------------------RKL----------RL-L---LLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIY 165 (353)
T ss_pred ---------------------cch----------hH-H---HHHHhhccccceEEEeccchhhhHHHhhcCCccccEEec
Confidence 000 00 0 11112346777888877665543312222 3445554
Q ss_pred cccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCC
Q 012314 238 PLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELC-----KRPFLWVVRPDITTD 312 (466)
Q Consensus 238 pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~ 312 (466)
+-....... +....-.. . ....+..+++..|+.. .......+++++..+ +.+++++..+.
T Consensus 166 ~~~~~~~~~-------~~~~~~~~-~-~~~~~~~~i~~~g~~~--~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~---- 230 (353)
T cd03811 166 NPIDIEEIR-------ALAEEPLE-L-GIPPDGPVILAVGRLS--PQKGFDTLIRAFALLRKEGPDARLVILGDGP---- 230 (353)
T ss_pred CCcChhhcC-------cccchhhh-c-CCCCCceEEEEEecch--hhcChHHHHHHHHHhhhcCCCceEEEEcCCc----
Confidence 322221111 00000000 0 1122347777788753 223344455555433 33444433222
Q ss_pred CCCCCchhHHHHh--cCCceeecccchh-hhhcCCCcccceec----cCCchhhhhhhcCcceeecccccchhhhHHHHH
Q 012314 313 ANDRYPEGFQERV--AARGQMISWAPQL-RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYIC 385 (466)
Q Consensus 313 ~~~~~~~~~~~~~--~~n~~~~~~~p~~-~ll~~~~~~~~i~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~ 385 (466)
..+.+ ....++. .+++.+.++.+.. .++..+++ +|.- |..+++.||+++|+|+|+... ......+.
T Consensus 231 ~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i~ 303 (353)
T cd03811 231 LREEL-EALAKELGLADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREILE 303 (353)
T ss_pred cHHHH-HHHHHhcCCCccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHhc
Confidence 00001 1122222 3567777887753 58877777 6532 335688999999999998743 36666777
Q ss_pred HhhhceeEeecCCCCCcCHHHH---HHHHHHHhcCHHHHHHHHH
Q 012314 386 DFWKVGLKFDRDEGGIITREEI---KNKVDQVLGNQDFKARALE 426 (466)
Q Consensus 386 ~~~G~G~~l~~~~~~~~~~~~l---~~~i~~ll~~~~~r~~a~~ 426 (466)
+. +.|...+. -+.+.+ .+++.+++.+++.++++..
T Consensus 304 ~~-~~g~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 304 DG-ENGLLVPV-----GDEAALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred CC-CceEEECC-----CCHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 74 78888853 456666 6777777777765555544
No 73
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.01 E-value=3.8e-08 Score=92.58 Aligned_cols=149 Identities=10% Similarity=0.039 Sum_probs=87.8
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhCCCC-EEEEEcCCCCCCCCCCCchhHHHHhcCCceeecccc-hhhhhcCCCc
Q 012314 269 SSVVYVSFGSFTILDQVQFQELALGLELCKRP-FLWVVRPDITTDANDRYPEGFQERVAARGQMISWAP-QLRVLNHPSI 346 (466)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p-~~~ll~~~~~ 346 (466)
+++|.+--||-...-...+..+.++...+..+ .++.+... ... +.+.+..... ....+++ -.+++..+++
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a------~~~-~~i~~~~~~~-~~~~~~~~~~~~m~~aDl 238 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF------FKG-KDLKEIYGDI-SEFEISYDTHKALLEAEF 238 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC------CcH-HHHHHHHhcC-CCcEEeccHHHHHHhhhH
Confidence 35888888886433234555555665444322 23333222 011 2333322211 1112222 2468877777
Q ss_pred ccceeccCCchhhhhhhcCcceeeccc--ccchhhhHHHHH---HhhhceeEeec---------C-CCCCcCHHHHHHHH
Q 012314 347 ACFLSHCGWNSTMEGVSNGIPFLCWPY--FGDQFLNERYIC---DFWKVGLKFDR---------D-EGGIITREEIKNKV 411 (466)
Q Consensus 347 ~~~i~hgG~~s~~eal~~GvP~l~~P~--~~DQ~~~a~rv~---~~~G~G~~l~~---------~-~~~~~~~~~l~~~i 411 (466)
+|+-.|..|+ |+..+|+|+|+ +. ..=|+.+|+++. . .|+.-.+.. | -.++.|++.|.+.+
T Consensus 239 --al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i 313 (347)
T PRK14089 239 --AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLKAY 313 (347)
T ss_pred --HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHHHH
Confidence 9999999999 99999999987 44 457888999998 5 366655510 0 03678999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHH
Q 012314 412 DQVLGNQDFKARALELKEKAMSSV 435 (466)
Q Consensus 412 ~~ll~~~~~r~~a~~~~~~~~~~~ 435 (466)
.+ . .+++.++..+.+++.+
T Consensus 314 ~~-~----~~~~~~~~~~~l~~~l 332 (347)
T PRK14089 314 KE-M----DREKFFKKSKELREYL 332 (347)
T ss_pred HH-H----HHHHHHHHHHHHHHHh
Confidence 88 2 3444444445555443
No 74
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.00 E-value=8.3e-07 Score=85.36 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=59.3
Q ss_pred cCCceeecccch-hhhhcCCCccccee--ccC-CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCC
Q 012314 326 AARGQMISWAPQ-LRVLNHPSIACFLS--HCG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 401 (466)
Q Consensus 326 ~~n~~~~~~~p~-~~ll~~~~~~~~i~--hgG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~ 401 (466)
.+++.+.+|.+. ..++..+++-++-+ +-| .++++||+++|+|+|+.. -......+.+. +.|..++.
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~----~~~~~e~i~~~-~~g~~~~~----- 314 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASD----HGGARETVRPG-ETGLLVPP----- 314 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcC----CCCcHHHHhCC-CceEEeCC-----
Confidence 357888888554 35887777733323 123 358999999999999874 34455566653 57888843
Q ss_pred cCHHHHHHHHHHHhc-CHHHHHH
Q 012314 402 ITREEIKNKVDQVLG-NQDFKAR 423 (466)
Q Consensus 402 ~~~~~l~~~i~~ll~-~~~~r~~ 423 (466)
-+.+++.++|..++. +++.+++
T Consensus 315 ~~~~~l~~~i~~~~~~~~~~~~~ 337 (355)
T cd03819 315 GDAEALAQALDQILSLLPEGRAK 337 (355)
T ss_pred CCHHHHHHHHHHHHhhCHHHHHH
Confidence 489999999976654 5554443
No 75
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.00 E-value=1.6e-07 Score=89.63 Aligned_cols=130 Identities=11% Similarity=0.034 Sum_probs=80.3
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHH--hcCCceeecccchh---hhhcCCC
Q 012314 271 VVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQER--VAARGQMISWAPQL---RVLNHPS 345 (466)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~n~~~~~~~p~~---~ll~~~~ 345 (466)
.+.+..|.. .+......+++++++.+.++++...+. ..........+. ..+++.+.+++++. .++..++
T Consensus 172 ~~i~~~Gr~--~~~Kg~~~li~~~~~~~~~l~i~G~~~----~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d 245 (335)
T cd03802 172 DYLLFLGRI--SPEKGPHLAIRAARRAGIPLKLAGPVS----DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNAR 245 (335)
T ss_pred CEEEEEEee--ccccCHHHHHHHHHhcCCeEEEEeCCC----CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCc
Confidence 344455665 233445667778888887776655433 111111111212 25788888999875 4677777
Q ss_pred ccccee--ccCC-chhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 346 IACFLS--HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 346 ~~~~i~--hgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
+-++-+ +-|. .++.||+++|+|+|+... ......+.+. ..|...+ . .+++.+++.+++..+
T Consensus 246 ~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~~-~~g~l~~----~---~~~l~~~l~~l~~~~ 309 (335)
T cd03802 246 ALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVEDG-VTGFLVD----S---VEELAAAVARADRLD 309 (335)
T ss_pred EEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeCC-CcEEEeC----C---HHHHHHHHHHHhccH
Confidence 733323 2343 578999999999998844 4455555541 3677773 2 999999999987543
No 76
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.99 E-value=5.2e-07 Score=86.70 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=62.4
Q ss_pred cCCceeecccchh---hhhcCCCccccee----------ccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhcee
Q 012314 326 AARGQMISWAPQL---RVLNHPSIACFLS----------HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGL 392 (466)
Q Consensus 326 ~~n~~~~~~~p~~---~ll~~~~~~~~i~----------hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~ 392 (466)
.+|+.+.+++|+. .++..+++ +|. -|..+++.||+++|+|+|+.+.. .....+.+ -..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~-~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVED-GETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhC-CCceE
Confidence 4788888999854 47777777 555 23357899999999999987543 23345554 24888
Q ss_pred EeecCCCCCcCHHHHHHHHHHHhcCHHHHHH
Q 012314 393 KFDRDEGGIITREEIKNKVDQVLGNQDFKAR 423 (466)
Q Consensus 393 ~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~ 423 (466)
.+.. -+.+++.++|.++++|+..+++
T Consensus 308 ~~~~-----~~~~~l~~~i~~~~~~~~~~~~ 333 (355)
T cd03799 308 LVPP-----GDPEALADAIERLLDDPELRRE 333 (355)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCHHHHHH
Confidence 8842 3799999999999998865443
No 77
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.97 E-value=2.6e-07 Score=89.06 Aligned_cols=132 Identities=18% Similarity=0.160 Sum_probs=80.6
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCCCCCchhHHHH-----hcCCceeecccch--h---h
Q 012314 271 VVYVSFGSFTILDQVQFQELALGLELCKRPF-LWVVRPDITTDANDRYPEGFQER-----VAARGQMISWAPQ--L---R 339 (466)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~-----~~~n~~~~~~~p~--~---~ 339 (466)
.+++..|.........+..+++++......+ ++.+|.+ ...+.+.+. ..+++.+.+|+++ . +
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g-------~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~ 253 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDG-------SDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQ 253 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCC-------ccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHH
Confidence 5667777653323344666777776554332 3333433 112233222 2467888888754 2 2
Q ss_pred hhcCCCcccceec----cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHh
Q 012314 340 VLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 415 (466)
Q Consensus 340 ll~~~~~~~~i~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll 415 (466)
.+..+++ +|.. |-..++.||+++|+|+|+.-. ......-+++. ..|..+++ -+.++++++|.+++
T Consensus 254 ~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~~-~~G~lv~~-----~d~~~la~~i~~l~ 322 (359)
T PRK09922 254 KIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKPG-LNGELYTP-----GNIDEFVGKLNKVI 322 (359)
T ss_pred HHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccCC-CceEEECC-----CCHHHHHHHHHHHH
Confidence 4434555 6642 335789999999999998741 22333455553 56888743 48999999999999
Q ss_pred cCHHH
Q 012314 416 GNQDF 420 (466)
Q Consensus 416 ~~~~~ 420 (466)
+|++.
T Consensus 323 ~~~~~ 327 (359)
T PRK09922 323 SGEVK 327 (359)
T ss_pred hCccc
Confidence 98864
No 78
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.97 E-value=6.8e-07 Score=86.06 Aligned_cols=88 Identities=11% Similarity=0.023 Sum_probs=61.4
Q ss_pred cCCceeecccch-hhhhcCCCcccceec----cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCC
Q 012314 326 AARGQMISWAPQ-LRVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 400 (466)
Q Consensus 326 ~~n~~~~~~~p~-~~ll~~~~~~~~i~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 400 (466)
.+++.+.++..+ .+++..+++ +|.- |-..+++||+++|+|+|+.... .....+.+ +.|....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~----~~~~~i~~--~~~~~~~----- 314 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTI----TKEVDLTD--LVKFLSL----- 314 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCC----chhhhhcc--CccEEeC-----
Confidence 367777777544 358877777 5542 4457899999999999987543 34444543 5555553
Q ss_pred CcCHHHHHHHHHHHhcCHHHHHHHHH
Q 012314 401 IITREEIKNKVDQVLGNQDFKARALE 426 (466)
Q Consensus 401 ~~~~~~l~~~i~~ll~~~~~r~~a~~ 426 (466)
.-++++++++|.++++|++.+++...
T Consensus 315 ~~~~~~~a~~i~~l~~~~~~~~~~~~ 340 (358)
T cd03812 315 DESPEIWAEEILKLKSEDRRERSSES 340 (358)
T ss_pred CCCHHHHHHHHHHHHhCcchhhhhhh
Confidence 23589999999999999877765533
No 79
>PLN02275 transferase, transferring glycosyl groups
Probab=98.96 E-value=5.5e-07 Score=87.16 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=53.3
Q ss_pred CCceee-cccchhh---hhcCCCccccee-c-----cC-CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEee
Q 012314 327 ARGQMI-SWAPQLR---VLNHPSIACFLS-H-----CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFD 395 (466)
Q Consensus 327 ~n~~~~-~~~p~~~---ll~~~~~~~~i~-h-----gG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~ 395 (466)
+|+.+. .|+|+.+ +|+.+++ +|. + -| .+++.||+++|+|+|+.. -.....-+++. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~----~gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVS----YSCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEec----CCChHHHccCC-CCeEEEC
Confidence 556655 4788754 5877777 663 1 12 357899999999999974 33466667663 6898873
Q ss_pred cCCCCCcCHHHHHHHHHHHh
Q 012314 396 RDEGGIITREEIKNKVDQVL 415 (466)
Q Consensus 396 ~~~~~~~~~~~l~~~i~~ll 415 (466)
++++|+++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 4899999998875
No 80
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.96 E-value=4.2e-07 Score=89.83 Aligned_cols=219 Identities=12% Similarity=0.066 Sum_probs=120.0
Q ss_pred cccEEEEcChhhccHHHHhhcCCcceec-cccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHH
Q 012314 210 AVNFHFCNSTYELESEAFTTFPELLPIG-PLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQ 288 (466)
Q Consensus 210 ~~~~vl~~s~~~le~~~~~~~p~v~~VG-pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~ 288 (466)
..|.+++--++|-+.. ....-++.||| |+...-... +..++..+-+.-.+++++|-+--||-.+.=...+.
T Consensus 361 ~vD~ll~IfPFE~~~y-~~~gv~v~yVGHPL~d~i~~~-------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllP 432 (608)
T PRK01021 361 YLDLLLLILPFEQNLF-KDSPLRTVYLGHPLVETISSF-------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLT 432 (608)
T ss_pred HhhhheecCccCHHHH-HhcCCCeEEECCcHHhhcccC-------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 4556666666665555 44566899999 776653211 11222223333334567999999986433334566
Q ss_pred HHHHHHH--hCC--CCEEEEEcCCCCCCCCCCCchhHHHHhc-CC---ceeecccchhhhhcCCCcccceeccCCchhhh
Q 012314 289 ELALGLE--LCK--RPFLWVVRPDITTDANDRYPEGFQERVA-AR---GQMISWAPQLRVLNHPSIACFLSHCGWNSTME 360 (466)
Q Consensus 289 ~~~~a~~--~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~n---~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~e 360 (466)
.++++.+ ... .++++...+. ...+.+.+... .+ +.++.--...+++..+++ .+.-.|. .++|
T Consensus 433 v~l~aa~~~~l~~~l~fvvp~a~~-------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLE 502 (608)
T PRK01021 433 IQVQAFLASSLASTHQLLVSSANP-------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLE 502 (608)
T ss_pred HHHHHHHHHHhccCeEEEEecCch-------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHH
Confidence 6777766 443 3444433222 11122232221 11 122210012468877776 6666554 5689
Q ss_pred hhhcCcceeecc-cccchhhhHHHHHHh---------hhceeEeecCC---CCCcCHHHHHHHHHHHhcCHHHHHHHHHH
Q 012314 361 GVSNGIPFLCWP-YFGDQFLNERYICDF---------WKVGLKFDRDE---GGIITREEIKNKVDQVLGNQDFKARALEL 427 (466)
Q Consensus 361 al~~GvP~l~~P-~~~DQ~~~a~rv~~~---------~G~G~~l~~~~---~~~~~~~~l~~~i~~ll~~~~~r~~a~~~ 427 (466)
+..+|+||+++= ...=-...++++.+. +=+|..+-||= .++.|++.|++++ ++|.|+++|++.++=
T Consensus 503 aAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~ 581 (608)
T PRK01021 503 TALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDA 581 (608)
T ss_pred HHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 999999998752 222233345555430 01122222211 2578999999997 888888777777666
Q ss_pred HHHHHHHHhcCCCcHHHHHH
Q 012314 428 KEKAMSSVREGGSSYKTFQN 447 (466)
Q Consensus 428 ~~~~~~~~~~~g~~~~~~~~ 447 (466)
-+++++.+++|.++.+.+-.
T Consensus 582 l~~lr~~Lg~~~~~~~~~~~ 601 (608)
T PRK01021 582 CRDLYQAMNESASTMKECLS 601 (608)
T ss_pred HHHHHHHhcCCCCCHHHHHH
Confidence 66666666556665544433
No 81
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.96 E-value=3.5e-06 Score=80.79 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=56.7
Q ss_pred CCceeecccch-hhhhcCCCcccceeccC----CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCC
Q 012314 327 ARGQMISWAPQ-LRVLNHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 401 (466)
Q Consensus 327 ~n~~~~~~~p~-~~ll~~~~~~~~i~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~ 401 (466)
.++.+.+..+. ..++..+++ +|..+. .+++.||+++|+|+|+. |...+...+.+ .|..++.
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~~~---~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELVGD---TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHhhc---CCEEeCC-----
Confidence 45655555443 458877777 775433 47899999999999986 44445555543 4566642
Q ss_pred cCHHHHHHHHHHHhcCHHHHH
Q 012314 402 ITREEIKNKVDQVLGNQDFKA 422 (466)
Q Consensus 402 ~~~~~l~~~i~~ll~~~~~r~ 422 (466)
-+.+++.++|.+++++++.++
T Consensus 317 ~~~~~l~~~i~~l~~~~~~~~ 337 (365)
T cd03807 317 GDPEALAEAIEALLADPALRQ 337 (365)
T ss_pred CCHHHHHHHHHHHHhChHHHH
Confidence 368999999999998874443
No 82
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.93 E-value=7.7e-07 Score=85.74 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=61.4
Q ss_pred cCCceee-cccchh---hhhcCCCccccee--c----cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEee
Q 012314 326 AARGQMI-SWAPQL---RVLNHPSIACFLS--H----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFD 395 (466)
Q Consensus 326 ~~n~~~~-~~~p~~---~ll~~~~~~~~i~--h----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~ 395 (466)
.+++.+. .|+|+. .++..+++ +|. . |..+++.||+++|+|+|+.+..+ ...+.+. +.|..+.
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 4677777 458864 57766776 653 2 33568899999999999987654 2334453 7788875
Q ss_pred cCCCCCcCHHHHHHHHHHHhcCHHHHHHHH
Q 012314 396 RDEGGIITREEIKNKVDQVLGNQDFKARAL 425 (466)
Q Consensus 396 ~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~ 425 (466)
. -+.+++.+++.++++|++.+++..
T Consensus 318 ~-----~d~~~~~~~l~~l~~~~~~~~~~~ 342 (366)
T cd03822 318 P-----GDPAALAEAIRRLLADPELAQALR 342 (366)
T ss_pred C-----CCHHHHHHHHHHHHcChHHHHHHH
Confidence 3 368999999999999876555433
No 83
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.93 E-value=8.2e-07 Score=85.65 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=83.0
Q ss_pred EEEeccccccCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCCCCCCchhHHH--HhcCCceeecccchhh---hhcCCC
Q 012314 273 YVSFGSFTILDQVQFQELALGLELCK--RPFLWVVRPDITTDANDRYPEGFQE--RVAARGQMISWAPQLR---VLNHPS 345 (466)
Q Consensus 273 ~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~n~~~~~~~p~~~---ll~~~~ 345 (466)
++..|+.. +...+..++++++.+. .+++++..+.. .....+.+.+ ...+++.+.+++|+.+ ++..++
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~ivG~~~~----~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad 269 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLVIVGNADH----NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAA 269 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEEEEcCCCC----cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCC
Confidence 44567653 3344556677776554 44444433221 1111122221 2247888889999864 565555
Q ss_pred cccceecc----CC-chhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHH
Q 012314 346 IACFLSHC----GW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDF 420 (466)
Q Consensus 346 ~~~~i~hg----G~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~ 420 (466)
+ ++.+. |. +++.||+++|+|+|+..... +...+. ..|..... .+.++++|.++++|++.
T Consensus 270 ~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~---~~g~~~~~-------~~~l~~~i~~l~~~~~~ 333 (363)
T cd04955 270 L--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLG---DKAIYFKV-------GDDLASLLEELEADPEE 333 (363)
T ss_pred E--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeec---CCeeEecC-------chHHHHHHHHHHhCHHH
Confidence 5 55433 32 47899999999999886542 222222 23444432 12299999999998755
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 012314 421 KARALELKEKAMSSVREGGSSYKTFQNFLQ 450 (466)
Q Consensus 421 r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~ 450 (466)
+++. ++..++.+.+.-+-....+++++
T Consensus 334 ~~~~---~~~~~~~~~~~fs~~~~~~~~~~ 360 (363)
T cd04955 334 VSAM---AKAARERIREKYTWEKIADQYEE 360 (363)
T ss_pred HHHH---HHHHHHHHHHhCCHHHHHHHHHH
Confidence 5443 33333322223444555555544
No 84
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.92 E-value=5.1e-06 Score=85.60 Aligned_cols=90 Identities=13% Similarity=0.126 Sum_probs=58.2
Q ss_pred CCceeeccc-ch---hhhhcC-CC-ccccee---ccCC-chhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeec
Q 012314 327 ARGQMISWA-PQ---LRVLNH-PS-IACFLS---HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 396 (466)
Q Consensus 327 ~n~~~~~~~-p~---~~ll~~-~~-~~~~i~---hgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~ 396 (466)
+++.+.++. +. .+++.+ ++ .++||. .-|. -+++||+++|+|+|+. +.......|.+. .-|..+++
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT----~~GG~~EiV~dg-~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFAT----RFGGPLEIIQDG-VSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcCC-CcEEEeCC
Confidence 566666654 32 234432 22 233664 2333 4789999999999997 444566677663 67888864
Q ss_pred CCCCCcCHHHHHHHHHHHh----cCHHHHHHHHH
Q 012314 397 DEGGIITREEIKNKVDQVL----GNQDFKARALE 426 (466)
Q Consensus 397 ~~~~~~~~~~l~~~i~~ll----~~~~~r~~a~~ 426 (466)
-++++++++|.+++ .|++.+++..+
T Consensus 694 -----~D~eaLA~aL~~ll~kll~dp~~~~~ms~ 722 (784)
T TIGR02470 694 -----YHGEEAAEKIVDFFEKCDEDPSYWQKISQ 722 (784)
T ss_pred -----CCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 47889999998875 57766665433
No 85
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.92 E-value=1.9e-06 Score=80.45 Aligned_cols=299 Identities=18% Similarity=0.155 Sum_probs=155.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch--HHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH--KRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
||.+-- ...-|+.-+..+.++|.++||+|.+.+-.... +.+.. -++.+..+..-- .+....+
T Consensus 2 kIwiDi-~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~---------yg~~y~~iG~~g------~~~~~Kl 65 (335)
T PF04007_consen 2 KIWIDI-THPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL---------YGIDYIVIGKHG------DSLYGKL 65 (335)
T ss_pred eEEEEC-CCchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH---------cCCCeEEEcCCC------CCHHHHH
Confidence 444433 22349999999999999999999999986532 22332 367777765311 1122212
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCCC
Q 012314 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGT 162 (466)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (466)
.... ....++++.+++ .+||++|+- .++.+..+|..+|+|+|.+.=..........
T Consensus 66 ~~~~----~R~~~l~~~~~~---~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~L---------------- 121 (335)
T PF04007_consen 66 LESI----ERQYKLLKLIKK---FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRL---------------- 121 (335)
T ss_pred HHHH----HHHHHHHHHHHh---hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcccee----------------
Confidence 2221 223344444444 789999975 4678889999999999997643221100000
Q ss_pred CCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEE-EcChhhccHHHHhhcCCcceeccccC
Q 012314 163 PMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHF-CNSTYELESEAFTTFPELLPIGPLLA 241 (466)
Q Consensus 163 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl-~~s~~~le~~~~~~~p~v~~VGpl~~ 241 (466)
.+| +.+ ..+............+ -.+ +.+. +++..++-. +-|+-+
T Consensus 122 --------t~P------la~---~i~~P~~~~~~~~~~~------G~~-~~i~~y~G~~E~ay-----------l~~F~P 166 (335)
T PF04007_consen 122 --------TLP------LAD---VIITPEAIPKEFLKRF------GAK-NQIRTYNGYKELAY-----------LHPFKP 166 (335)
T ss_pred --------ehh------cCC---eeECCcccCHHHHHhc------CCc-CCEEEECCeeeEEe-----------ecCCCC
Confidence 000 000 0000000000000000 011 1232 444333321 111111
Q ss_pred CCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccc----cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCC
Q 012314 242 SNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTI----LDQVQFQELALGLELCKRPFLWVVRPDITTDANDRY 317 (466)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~----~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~ 317 (466)
+.+..+-+.. ++.+.|++=+.+... -....+..+++.+++.+..++..-... ..
T Consensus 167 --------------d~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~-------~~ 224 (335)
T PF04007_consen 167 --------------DPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYE-------DQ 224 (335)
T ss_pred --------------ChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCc-------ch
Confidence 1111222221 234577777765311 123456778888888887744333222 12
Q ss_pred chhHHHHhcCCceee-cccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeec
Q 012314 318 PEGFQERVAARGQMI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 396 (466)
Q Consensus 318 ~~~~~~~~~~n~~~~-~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~ 396 (466)
++.+. +. ++.+. .-++...||.++++ +|+-|| +...||...|+|.|.+ +.++-...-+.+.+. |+ ..
T Consensus 225 ~~~~~-~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l~-- 292 (335)
T PF04007_consen 225 RELFE-KY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--LY-- 292 (335)
T ss_pred hhHHh-cc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--eE--
Confidence 22221 11 23333 55555689988887 998777 6789999999999985 223333344556563 65 33
Q ss_pred CCCCCcCHHHHHHHHHHHh
Q 012314 397 DEGGIITREEIKNKVDQVL 415 (466)
Q Consensus 397 ~~~~~~~~~~l~~~i~~ll 415 (466)
..-+.+++.+.|.+.+
T Consensus 293 ---~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 293 ---HSTDPDEIVEYVRKNL 308 (335)
T ss_pred ---ecCCHHHHHHHHHHhh
Confidence 3456777777665544
No 86
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.91 E-value=1.1e-06 Score=85.82 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=71.3
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCCCCCchhHHHHhcC---Cce-eecccchhhhhc
Q 012314 272 VYVSFGSFTILDQVQFQELALGLELC-----KRPFLWVVRPDITTDANDRYPEGFQERVAA---RGQ-MISWAPQLRVLN 342 (466)
Q Consensus 272 v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---n~~-~~~~~p~~~ll~ 342 (466)
+++..|... ....+..+++++..+ +.+ ++++|++ +..+.+++...+ +.. +.++.+..+++.
T Consensus 230 ~~l~vGRL~--~eK~~~~Li~a~~~l~~~~~~~~-l~ivGdG-------p~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~ 299 (462)
T PLN02846 230 GAYYIGKMV--WSKGYKELLKLLHKHQKELSGLE-VDLYGSG-------EDSDEVKAAAEKLELDVRVYPGRDHADPLFH 299 (462)
T ss_pred EEEEEecCc--ccCCHHHHHHHHHHHHhhCCCeE-EEEECCC-------ccHHHHHHHHHhcCCcEEEECCCCCHHHHHH
Confidence 444556542 233455556665432 223 4455544 233344433322 222 346666667887
Q ss_pred CCCcccceecc----CCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 343 HPSIACFLSHC----GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 343 ~~~~~~~i~hg----G~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
..++ ||.-+ -..++.||+++|+|+|+.-.. .+ .-+.+. +-|.... +.+++.+++.++|.++
T Consensus 300 ~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~----~~-~~v~~~-~ng~~~~-------~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 300 DYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHP----SN-EFFKQF-PNCRTYD-------DGKGFVRATLKALAEE 364 (462)
T ss_pred hCCE--EEECCCcccchHHHHHHHHcCCcEEEecCC----Cc-ceeecC-CceEecC-------CHHHHHHHHHHHHccC
Confidence 7766 88763 346889999999999998433 22 334442 4554442 6889999999999754
No 87
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.89 E-value=8e-06 Score=76.56 Aligned_cols=315 Identities=12% Similarity=0.111 Sum_probs=184.0
Q ss_pred CCccCHHHHHHHHHHHHhC--CCEEEEEe-CCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHh
Q 012314 12 PAQGHVIPLLEFSQCLAKH--GFRVTFVN-TDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQV 88 (466)
Q Consensus 12 ~~~GH~~p~l~la~~L~~r--Gh~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (466)
.+.|-++...+|.++|.++ +..|++-+ ++-..+.+.+.. +..+...-+|-+
T Consensus 57 aSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D-------------------- 110 (419)
T COG1519 57 ASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLD-------------------- 110 (419)
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcC--------------------
Confidence 4669999999999999998 88888888 444444444432 122344444421
Q ss_pred ccHHHHHHHHHHhcCCCCCccEEEeCCCch--hHHHHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCCCCCcc
Q 012314 89 MPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGTPMSM 166 (466)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 166 (466)
....++++++. .+||++|.-.... ....-+++.|+|.+.+..=-.
T Consensus 111 ~~~~v~rFl~~------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS--------------------------- 157 (419)
T COG1519 111 LPIAVRRFLRK------WRPKLLIIMETELWPNLINELKRRGIPLVLVNARLS--------------------------- 157 (419)
T ss_pred chHHHHHHHHh------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec---------------------------
Confidence 23346777777 8899988665444 566677889999998641000
Q ss_pred ccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhh-hccccEEEEcChhhccHHHHhhcCCcceeccccCCCCC
Q 012314 167 QMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRA-MIAVNFHFCNSTYELESEAFTTFPELLPIGPLLASNRL 245 (466)
Q Consensus 167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vl~~s~~~le~~~~~~~p~v~~VGpl~~~~~~ 245 (466)
.+. ...+..+....+. +...+++++.|...-+.-..--.+++...|-+-.+...
T Consensus 158 -----------------------~rS--~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~v~v~GNlKfd~~~ 212 (419)
T COG1519 158 -----------------------DRS--FARYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGNLKFDIEP 212 (419)
T ss_pred -----------------------hhh--hHHHHHHHHHHHHHHHhcceeeecCHHHHHHHHhcCCcceEEecceeecCCC
Confidence 000 0011222222222 36778888888665443311123457777766655432
Q ss_pred CCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHH-hCC-CCEEEEEcCCCCCCCCCCCchhHHH
Q 012314 246 GNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLE-LCK-RPFLWVVRPDITTDANDRYPEGFQE 323 (466)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~-~~~-~~~i~~~~~~~~~~~~~~~~~~~~~ 323 (466)
. ...+..+..|-..-+....+.|..+|+.. ..+.+-....++. +.+ ..+||+=... +.. +.+.+
T Consensus 213 ~------~~~~~~~~~~r~~l~~~r~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPRHp------ERf-~~v~~ 278 (419)
T COG1519 213 P------PQLAAELAALRRQLGGHRPVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPRHP------ERF-KAVEN 278 (419)
T ss_pred C------hhhHHHHHHHHHhcCCCCceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecCCh------hhH-HHHHH
Confidence 2 11111222222221211367776777533 3444444444443 332 3344443222 111 11111
Q ss_pred Hh------------------cCCceeecccchh-hhhcCCCc----ccceeccCCchhhhhhhcCcceeecccccchhhh
Q 012314 324 RV------------------AARGQMISWAPQL-RVLNHPSI----ACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLN 380 (466)
Q Consensus 324 ~~------------------~~n~~~~~~~p~~-~ll~~~~~----~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~ 380 (466)
.. ..++.+.|-+--+ .+++-+++ +-++.+||.| ..|++++|+|+|.=|+..-|.+.
T Consensus 279 l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei 357 (419)
T COG1519 279 LLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDI 357 (419)
T ss_pred HHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHH
Confidence 11 1244455555433 24444444 2356699997 68999999999999999999999
Q ss_pred HHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 012314 381 ERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMS 433 (466)
Q Consensus 381 a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~ 433 (466)
++++.++ |.|+.++ +.+.|.+++..+++|++.|++..+-...+..
T Consensus 358 ~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 358 AERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAYGRAGLEFLA 402 (419)
T ss_pred HHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999996 9999994 3888999999999888777766554444443
No 88
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.88 E-value=1.5e-06 Score=83.69 Aligned_cols=140 Identities=14% Similarity=0.180 Sum_probs=82.4
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCCCCCchhHHH---H--hcCCceeecccch-
Q 012314 269 SSVVYVSFGSFTILDQVQFQELALGLELC-----KRPFLWVVRPDITTDANDRYPEGFQE---R--VAARGQMISWAPQ- 337 (466)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~---~--~~~n~~~~~~~p~- 337 (466)
+..+++..|+.. +.+....+++++... +.+++++..+. ..+.+.+ . ..+|+.+.++..+
T Consensus 187 ~~~~~l~~g~~~--~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~ 256 (360)
T cd04951 187 DTFVILAVGRLV--EAKDYPNLLKAFAKLLSDYLDIKLLIAGDGP--------LRATLERLIKALGLSNRVKLLGLRDDI 256 (360)
T ss_pred CCEEEEEEeeCc--hhcCcHHHHHHHHHHHhhCCCeEEEEEcCCC--------cHHHHHHHHHhcCCCCcEEEecccccH
Confidence 346777778652 233334444444322 34555543322 1122222 1 2356777787765
Q ss_pred hhhhcCCCcccceecc----CCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHH
Q 012314 338 LRVLNHPSIACFLSHC----GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQ 413 (466)
Q Consensus 338 ~~ll~~~~~~~~i~hg----G~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ 413 (466)
..++..+++ +|.-. ..+++.||+++|+|+|+. |.......+++ .|..+. .-+.+++++++.+
T Consensus 257 ~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~---~g~~~~-----~~~~~~~~~~i~~ 322 (360)
T cd04951 257 AAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD---SGLIVP-----ISDPEALANKIDE 322 (360)
T ss_pred HHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC---CceEeC-----CCCHHHHHHHHHH
Confidence 458877777 55432 256889999999999975 55556666654 344443 2478999999999
Q ss_pred Hh-cCHHHHHHHHHHHHHHH
Q 012314 414 VL-GNQDFKARALELKEKAM 432 (466)
Q Consensus 414 ll-~~~~~r~~a~~~~~~~~ 432 (466)
++ .++.+++....-++.+.
T Consensus 323 ll~~~~~~~~~~~~~~~~~~ 342 (360)
T cd04951 323 ILKMSGEERDIIGARRERIV 342 (360)
T ss_pred HHhCCHHHHHHHHHHHHHHH
Confidence 98 45566655544433333
No 89
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.87 E-value=5.3e-07 Score=85.36 Aligned_cols=340 Identities=15% Similarity=0.110 Sum_probs=176.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKC 85 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (466)
|++++.-..|+.+ ...|.++|.+++=++.|.+-... ..++. |++...--+.+ ....+.+.+..+
T Consensus 1 I~i~AGE~SGD~~-ga~Li~~Lk~~~p~~~~~GvGG~--~M~~~---------G~~~l~d~~~l----svmG~~Evl~~l 64 (373)
T PF02684_consen 1 IFISAGEASGDLH-GARLIRALKARDPDIEFYGVGGP--RMQAA---------GVESLFDMEEL----SVMGFVEVLKKL 64 (373)
T ss_pred CEEEeeCccHHHH-HHHHHHHHHhhCCCcEEEEEech--HHHhC---------CCceecchHHh----hhccHHHHHHHH
Confidence 3455555567777 56788999888766666655432 23332 33332111000 112222222222
Q ss_pred HHhccHHHHHHHHHHhcCCCCCccEEE-eCC--CchhHHHHHHHcCCc--eEEeccchhHHHHHHhhcccccccCccCCC
Q 012314 86 LQVMPGKLEELIEEINSREDEKIDCFI-ADG--NIGWSMEIAKKMNVR--GAVFWPSSAASVALVFRIPKLIDDGIIDSH 160 (466)
Q Consensus 86 ~~~~~~~~~~ll~~l~~~~~~~~DlvV-~D~--~~~~~~~~A~~lgiP--~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (466)
.......+++.+.+.. .+||++| +|+ |.......+++.|+| ++.|.+
T Consensus 65 -~~~~~~~~~~~~~~~~---~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~------------------------ 116 (373)
T PF02684_consen 65 -PKLKRLFRKLVERIKE---EKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYIS------------------------ 116 (373)
T ss_pred -HHHHHHHHHHHHHHHH---cCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEEC------------------------
Confidence 1223344555555555 7899988 565 233455566678888 555431
Q ss_pred CCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhcCCcceec-cc
Q 012314 161 GTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLPIG-PL 239 (466)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~p~v~~VG-pl 239 (466)
|.++.++ +.+..... ...|.+++-.+++-++. ....-++.||| |+
T Consensus 117 ------------PqvWAWr-----------~~R~~~i~----------~~~D~ll~ifPFE~~~y-~~~g~~~~~VGHPl 162 (373)
T PF02684_consen 117 ------------PQVWAWR-----------PGRAKKIK----------KYVDHLLVIFPFEPEFY-KKHGVPVTYVGHPL 162 (373)
T ss_pred ------------CceeeeC-----------ccHHHHHH----------HHHhheeECCcccHHHH-hccCCCeEEECCcc
Confidence 1111111 11111111 34566666666655554 44456789999 77
Q ss_pred cCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHH---hC--CCCEEEEEcCCCCCCCC
Q 012314 240 LASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLE---LC--KRPFLWVVRPDITTDAN 314 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~---~~--~~~~i~~~~~~~~~~~~ 314 (466)
...-... ..+....+.+ -.+++++|.+--||-.+-=...+..++++.+ +. +.++++.....
T Consensus 163 ~d~~~~~-------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~------ 228 (373)
T PF02684_consen 163 LDEVKPE-------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPE------ 228 (373)
T ss_pred hhhhccC-------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCH------
Confidence 7654332 1112222222 2244679999999863322233445555542 22 34455444322
Q ss_pred CCCchhHHH---HhcCCceeeccc-chhhhhcCCCcccceeccCCchhhhhhhcCcceeecc-cccchhhhHHHHHHhhh
Q 012314 315 DRYPEGFQE---RVAARGQMISWA-PQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWP-YFGDQFLNERYICDFWK 389 (466)
Q Consensus 315 ~~~~~~~~~---~~~~n~~~~~~~-p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P-~~~DQ~~~a~rv~~~~G 389 (466)
...+.+.+ ....++.+.-.. .-.+++..+++ .+.-.| +.++|+..+|+|+|++= ...=....|+++.+ ..
T Consensus 229 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~ 303 (373)
T PF02684_consen 229 -VHEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VK 303 (373)
T ss_pred -HHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CC
Confidence 11111111 122333332211 23457777776 444444 46799999999998762 22233345555533 12
Q ss_pred c--------eeEeecCC-CCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcH
Q 012314 390 V--------GLKFDRDE-GGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSY 442 (466)
Q Consensus 390 ~--------G~~l~~~~-~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~ 442 (466)
. |..+-++= .+..|++.|.+++.++|.|.+.++......+.+++..+.|.++.
T Consensus 304 ~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (373)
T PF02684_consen 304 YISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKELFREIRQLLGPGASSR 365 (373)
T ss_pred EeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccCCH
Confidence 1 11111100 36789999999999999999878777777777877766666653
No 90
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.86 E-value=1.1e-06 Score=84.66 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=63.9
Q ss_pred hcCCceeecccchh---hhhcCCCcccceec----cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecC
Q 012314 325 VAARGQMISWAPQL---RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD 397 (466)
Q Consensus 325 ~~~n~~~~~~~p~~---~ll~~~~~~~~i~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~ 397 (466)
..+++.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+. ..|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~---~~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAG---DAALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Cccceec---CceeeeCC-
Confidence 35788888999875 46777776 5432 3356899999999999986542 2222232 23555532
Q ss_pred CCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 012314 398 EGGIITREEIKNKVDQVLGNQDFKARALELKEK 430 (466)
Q Consensus 398 ~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~ 430 (466)
-+.+++.++|.++++|++.+.++.+-+..
T Consensus 321 ----~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 349 (365)
T cd03809 321 ----LDPEALAAAIERLLEDPALREELRERGLA 349 (365)
T ss_pred ----CCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 37899999999999999887766655443
No 91
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.86 E-value=1.6e-06 Score=84.15 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=70.1
Q ss_pred CCceeeccc--chh---hhhcCCCcccceecc---C-CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecC
Q 012314 327 ARGQMISWA--PQL---RVLNHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD 397 (466)
Q Consensus 327 ~n~~~~~~~--p~~---~ll~~~~~~~~i~hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~ 397 (466)
+++.+.++. ++. .+++.+++ |+.-. | ..++.||+++|+|+|+.... ....-+.+. ..|...+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC--
Confidence 567777776 432 47766776 77533 3 34889999999999987543 334445552 5676653
Q ss_pred CCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012314 398 EGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 453 (466)
Q Consensus 398 ~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 453 (466)
+.+.++++|.++++|++.+++..+-+.+.. .+.-+-...++++++.+.
T Consensus 323 -----~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~---~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 -----TVEEAAVRILYLLRDPELRRKMGANAREHV---RENFLITRHLKDYLYLIS 370 (372)
T ss_pred -----CcHHHHHHHHHHHcCHHHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHH
Confidence 467888899999998877765444333322 224555666666666554
No 92
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.84 E-value=4.5e-06 Score=81.44 Aligned_cols=167 Identities=13% Similarity=0.080 Sum_probs=92.4
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCCCCCchhHHHHh---c---CCceee-cccchh---
Q 012314 271 VVYVSFGSFTILDQVQFQELALGLELC--KRPFLWVVRPDITTDANDRYPEGFQERV---A---ARGQMI-SWAPQL--- 338 (466)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~---~n~~~~-~~~p~~--- 338 (466)
++++..|... +......+++++..+ +.++++..++.. ...+.+.+.+.. . .++... +++++.
T Consensus 202 ~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 275 (388)
T TIGR02149 202 PYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPD----TPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELV 275 (388)
T ss_pred eEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCC----cHHHHHHHHHHHHHhccccCceEEecCCCCHHHHH
Confidence 5566677653 334456666676554 455555544331 111122222221 1 234443 677754
Q ss_pred hhhcCCCcccceec----cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCC-CCCcCHHHHHHHHHH
Q 012314 339 RVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE-GGIITREEIKNKVDQ 413 (466)
Q Consensus 339 ~ll~~~~~~~~i~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~-~~~~~~~~l~~~i~~ 413 (466)
.++..+++ +|.- |...++.||+++|+|+|+.. .......+++. +.|..++.+. ...-..+++.++|.+
T Consensus 276 ~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~----~~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 276 ELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASA----TGGIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeC----CCCHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHHH
Confidence 47877777 6642 23457799999999999974 34566666663 6788886410 001112899999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012314 414 VLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 453 (466)
Q Consensus 414 ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 453 (466)
+++|++-+++..+-+.+ .+.+.-+.....+++++.+.
T Consensus 349 l~~~~~~~~~~~~~a~~---~~~~~~s~~~~~~~~~~~y~ 385 (388)
T TIGR02149 349 LLADPELAKKMGIAGRK---RAEEEFSWGSIAKKTVEMYR 385 (388)
T ss_pred HHhCHHHHHHHHHHHHH---HHHHhCCHHHHHHHHHHHHH
Confidence 99887655543332222 11123444555555555443
No 93
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.84 E-value=9.3e-06 Score=78.82 Aligned_cols=112 Identities=8% Similarity=0.010 Sum_probs=71.8
Q ss_pred CCceeecccch-hhhhcCCCcccce--ec--cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCC
Q 012314 327 ARGQMISWAPQ-LRVLNHPSIACFL--SH--CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 401 (466)
Q Consensus 327 ~n~~~~~~~p~-~~ll~~~~~~~~i--~h--gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~ 401 (466)
.++++.++..+ ..++..+++ +| ++ |...++.||+++|+|+|+... ......+.+. ..|..+++
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCC-----
Confidence 44555555443 468877777 65 32 445689999999999999754 3455566552 56877743
Q ss_pred cCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012314 402 ITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 453 (466)
Q Consensus 402 ~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 453 (466)
-+.++++++|.++++|++.++.. ++..++.+.+.-+.....+++.+.+.
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~~~---~~~a~~~~~~~fs~~~~~~~~~~~y~ 371 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARRAH---GAAGRARAEQQFSINAMVAAYAGLYD 371 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHH---HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 47899999999999887655433 33333322234555555666655544
No 94
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.79 E-value=8.2e-08 Score=91.15 Aligned_cols=137 Identities=17% Similarity=0.200 Sum_probs=79.9
Q ss_pred CCCeEEEEEeccccccC----HHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchhHHHHhc--CCceeecccch--
Q 012314 267 QPSSVVYVSFGSFTILD----QVQFQELALGLELC-KRPFLWVVRPDITTDANDRYPEGFQERVA--ARGQMISWAPQ-- 337 (466)
Q Consensus 267 ~~~~~v~vs~Gs~~~~~----~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~n~~~~~~~p~-- 337 (466)
.+++.+++++=...... ...+..++.++... +.++||.+.+. +.....+.+... +|+++++-+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~------p~~~~~i~~~l~~~~~v~~~~~l~~~~ 251 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN------PRGSDIIIEKLKKYDNVRLIEPLGYEE 251 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-------HHHHHHHHHHHTT-TTEEEE----HHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC------chHHHHHHHHhcccCCEEEECCCCHHH
Confidence 45679999984433333 23455566666555 67888888644 222233333222 58888866654
Q ss_pred -hhhhcCCCcccceeccCCchhh-hhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHh
Q 012314 338 -LRVLNHPSIACFLSHCGWNSTM-EGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 415 (466)
Q Consensus 338 -~~ll~~~~~~~~i~hgG~~s~~-eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll 415 (466)
..+|.++++ +|+..| ++. ||.+.|||+|.+= |+...=+-+ . .|..+.+. .+.++|.+++++++
T Consensus 252 ~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR---~~geRqe~r-~-~~~nvlv~------~~~~~I~~ai~~~l 316 (346)
T PF02350_consen 252 YLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIR---DSGERQEGR-E-RGSNVLVG------TDPEAIIQAIEKAL 316 (346)
T ss_dssp HHHHHHHESE--EEESSH--HHHHHGGGGT--EEECS---SS-S-HHHH-H-TTSEEEET------SSHHHHHHHHHHHH
T ss_pred HHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEec---CCCCCHHHH-h-hcceEEeC------CCHHHHHHHHHHHH
Confidence 568888887 999999 555 9999999999992 222222222 2 26666652 58999999999999
Q ss_pred cCHHHHHHH
Q 012314 416 GNQDFKARA 424 (466)
Q Consensus 416 ~~~~~r~~a 424 (466)
++..+.++.
T Consensus 317 ~~~~~~~~~ 325 (346)
T PF02350_consen 317 SDKDFYRKL 325 (346)
T ss_dssp H-HHHHHHH
T ss_pred hChHHHHhh
Confidence 874555443
No 95
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.74 E-value=2e-05 Score=77.17 Aligned_cols=113 Identities=15% Similarity=0.137 Sum_probs=75.1
Q ss_pred cCCceeecccchhh---hhcCCCcccceec---------cCC-chhhhhhhcCcceeecccccchhhhHHHHHHhhhcee
Q 012314 326 AARGQMISWAPQLR---VLNHPSIACFLSH---------CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGL 392 (466)
Q Consensus 326 ~~n~~~~~~~p~~~---ll~~~~~~~~i~h---------gG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~ 392 (466)
.+++.+.+|+|+.+ ++..+++ +|.- -|. .+++||+++|+|+|+... ......+.+. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~----~g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH----SGIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC----CCchhhhcCC-CceE
Confidence 36788889999764 6767776 6642 244 568999999999999844 3455566653 5788
Q ss_pred EeecCCCCCcCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012314 393 KFDRDEGGIITREEIKNKVDQVLG-NQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 453 (466)
Q Consensus 393 ~l~~~~~~~~~~~~l~~~i~~ll~-~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 453 (466)
.+++ -+.++++++|.++++ |++.+++. ++..++.+.+.-+.....+++.+.+.
T Consensus 351 lv~~-----~d~~~la~ai~~l~~~d~~~~~~~---~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LVPE-----NDAQALAQRLAAFSQLDTDELAPV---VKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCCHHHHHHH---HHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 7743 479999999999998 87655433 33333332234555555566555543
No 96
>PLN02949 transferase, transferring glycosyl groups
Probab=98.72 E-value=5.1e-05 Score=75.10 Aligned_cols=114 Identities=15% Similarity=0.068 Sum_probs=68.8
Q ss_pred cCCceeecccchh---hhhcCCCccccee---ccCCc-hhhhhhhcCcceeecccccchhhhHHHHHH-hhh-ceeEeec
Q 012314 326 AARGQMISWAPQL---RVLNHPSIACFLS---HCGWN-STMEGVSNGIPFLCWPYFGDQFLNERYICD-FWK-VGLKFDR 396 (466)
Q Consensus 326 ~~n~~~~~~~p~~---~ll~~~~~~~~i~---hgG~~-s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~-~~G-~G~~l~~ 396 (466)
.+++.+.+++|+. .+|..+++ +|+ +-|.| ++.||+++|+|+|+....+--.+. +.+ .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eI---V~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDI---VLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCccee---eecCCCCcccccC--
Confidence 4678888999865 47877776 663 34444 789999999999998654311011 111 002 23332
Q ss_pred CCCCCcCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012314 397 DEGGIITREEIKNKVDQVLGN-QDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 455 (466)
Q Consensus 397 ~~~~~~~~~~l~~~i~~ll~~-~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~ 455 (466)
+ +.++++++|.+++++ ++.+++ |++..++.+. .-+..+..+++.+.+...
T Consensus 407 ---~--~~~~la~ai~~ll~~~~~~r~~---m~~~ar~~~~-~FS~e~~~~~~~~~i~~l 457 (463)
T PLN02949 407 ---T--TVEEYADAILEVLRMRETERLE---IAAAARKRAN-RFSEQRFNEDFKDAIRPI 457 (463)
T ss_pred ---C--CHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHHH-HcCHHHHHHHHHHHHHHH
Confidence 2 789999999999984 454443 3333333322 355566666666666554
No 97
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.71 E-value=5.6e-06 Score=81.04 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=61.5
Q ss_pred cCCceeecccchh-hhhcCCCcccce--ec--cCC-chhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCC
Q 012314 326 AARGQMISWAPQL-RVLNHPSIACFL--SH--CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEG 399 (466)
Q Consensus 326 ~~n~~~~~~~p~~-~ll~~~~~~~~i--~h--gG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~ 399 (466)
.+++.+.++++.. .++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. ... -|.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC----
Confidence 4678888999864 48877777 65 32 354 46999999999999997543321 122 26777762
Q ss_pred CCcCHHHHHHHHHHHhcCHHHHHHHH
Q 012314 400 GIITREEIKNKVDQVLGNQDFKARAL 425 (466)
Q Consensus 400 ~~~~~~~l~~~i~~ll~~~~~r~~a~ 425 (466)
-++++++++|.++++|++.+++..
T Consensus 347 --~~~~~la~ai~~ll~~~~~~~~~~ 370 (397)
T TIGR03087 347 --ADPADFAAAILALLANPAEREELG 370 (397)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHHH
Confidence 378999999999999887655443
No 98
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.69 E-value=4.8e-06 Score=80.02 Aligned_cols=134 Identities=17% Similarity=0.214 Sum_probs=82.8
Q ss_pred CeEEEEEeccc---cccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHh--cCCceeecccc---hhhh
Q 012314 269 SSVVYVSFGSF---TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV--AARGQMISWAP---QLRV 340 (466)
Q Consensus 269 ~~~v~vs~Gs~---~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~n~~~~~~~p---~~~l 340 (466)
++.|++++=.. .....+.+..+++++...+.++++++... ++. ...+.+.+.+.. .+|+.+.+-++ ...+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~-~p~-~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNA-DAG-SRIINEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCC-CCC-chHHHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 45888887543 23446779999999988776666665432 000 011222233222 36788876555 4568
Q ss_pred hcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeE-eecCCCCCcCHHHHHHHHHHHhcCHH
Q 012314 341 LNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLK-FDRDEGGIITREEIKNKVDQVLGNQD 419 (466)
Q Consensus 341 l~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~-l~~~~~~~~~~~~l~~~i~~ll~~~~ 419 (466)
+.++++ +|+.++.+- .||.+.|+|+|.+- .-| ..+ +. |..+. +. .++++|.+++.+++ +++
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~--~R~----e~~-~~-g~nvl~vg------~~~~~I~~a~~~~~-~~~ 340 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG--TRQ----KGR-LR-ADSVIDVD------PDKEEIVKAIEKLL-DPA 340 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec--CCc----hhh-hh-cCeEEEeC------CCHHHHHHHHHHHh-ChH
Confidence 878777 999886555 89999999999774 122 111 21 43333 32 47899999999965 444
Q ss_pred HHH
Q 012314 420 FKA 422 (466)
Q Consensus 420 ~r~ 422 (466)
+++
T Consensus 341 ~~~ 343 (365)
T TIGR03568 341 FKK 343 (365)
T ss_pred HHH
Confidence 433
No 99
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.63 E-value=1.8e-06 Score=83.10 Aligned_cols=133 Identities=11% Similarity=0.142 Sum_probs=89.2
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeecccchh---hhhcCCCccc
Q 012314 272 VYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQL---RVLNHPSIAC 348 (466)
Q Consensus 272 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p~~---~ll~~~~~~~ 348 (466)
.++..|+.. +......++++++..+.+++++..+. ..+.+.+...+|+.+.+++|+. .++..+++-+
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~--------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v 266 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP--------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFL 266 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh--------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEE
Confidence 344566543 33456778888888887766655433 1234444557899999999974 4787777733
Q ss_pred ceeccCC-chhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH-HHHHHH
Q 012314 349 FLSHCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ-DFKARA 424 (466)
Q Consensus 349 ~i~hgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~-~~r~~a 424 (466)
+-+.-|. .++.||+++|+|+|+....+ ....+++. +.|..+++ -+.++++++|.++++|+ ..++++
T Consensus 267 ~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~~~~~~~~ 334 (351)
T cd03804 267 FPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNEDFDPQAI 334 (351)
T ss_pred ECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCcccCHHHH
Confidence 2234444 45689999999999985433 44445553 68888853 47889999999999887 344433
No 100
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.63 E-value=4.9e-06 Score=77.33 Aligned_cols=330 Identities=18% Similarity=0.176 Sum_probs=177.0
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC-CEEEEEeCCcch--HHHHHhhhcCCCCCCCeEEEecC-CC--CCCCCC
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHG-FRVTFVNTDYNH--KRVVESLQGKNYLGEQIHLVSIP-DG--MEPWED 74 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rG-h~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~ 74 (466)
|+++||+++. +.+=.+.-|..+.++|.+.+ .+..++.+.-+. +..... ++...+. .. +.....
T Consensus 1 m~~~Kv~~I~-GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~----------le~~~i~~pdy~L~i~~~ 69 (383)
T COG0381 1 MKMLKVLTIF-GTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQV----------LELFGIRKPDYDLNIMKP 69 (383)
T ss_pred CCceEEEEEE-ecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHH----------HHHhCCCCCCcchhcccc
Confidence 7888887765 88899999999999999987 666666666555 333222 1222221 11 111111
Q ss_pred CccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEe--CCCch-hHHHHHHHcCCceEEeccchhHHHHHHhhcccc
Q 012314 75 RNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIA--DGNIG-WSMEIAKKMNVRGAVFWPSSAASVALVFRIPKL 151 (466)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~--D~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 151 (466)
...+.. ........+.+++++ .+||+|++ |..+. ++..+|.+.+||+.-+-.+--+
T Consensus 70 ~~tl~~----~t~~~i~~~~~vl~~------~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt----------- 128 (383)
T COG0381 70 GQTLGE----ITGNIIEGLSKVLEE------EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRT----------- 128 (383)
T ss_pred CCCHHH----HHHHHHHHHHHHHHh------hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccccc-----------
Confidence 222222 223345567788887 88999885 55555 6688999999999885422211
Q ss_pred cccCccCCCCCCCccccccccCCCCCCCccccc----ccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHH
Q 012314 152 IDDGIIDSHGTPMSMQMFRIAPKMPEMNSRDCF----WAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAF 227 (466)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~ 227 (466)
... + +|.-.-|.+. ...+... ....+.+ .+.-...+.|++.+.+.+|-- .
T Consensus 129 -------------~~~---~---~PEE~NR~l~~~~S~~hfapt---e~ar~nL---l~EG~~~~~IfvtGnt~iDal-~ 182 (383)
T COG0381 129 -------------GDL---Y---FPEEINRRLTSHLSDLHFAPT---EIARKNL---LREGVPEKRIFVTGNTVIDAL-L 182 (383)
T ss_pred -------------CCC---C---CcHHHHHHHHHHhhhhhcCCh---HHHHHHH---HHcCCCccceEEeCChHHHHH-H
Confidence 000 0 0000000000 0000000 0000000 001122334555555544422 0
Q ss_pred hhcCCcceeccccCCCCCCCCCCCcccCCccchhh-hccCCCCeEEEEEeccccccCHHHHHHHHHHH----HhCCCCEE
Q 012314 228 TTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKW-LDQQQPSSVVYVSFGSFTILDQVQFQELALGL----ELCKRPFL 302 (466)
Q Consensus 228 ~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~----~~~~~~~i 302 (466)
..... . ..+.....- +.. +.+..+++++=-..... +.+..+.+++ +.. ..+.
T Consensus 183 ~~~~~-------~-------------~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~ 239 (383)
T COG0381 183 NTRDR-------V-------------LEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVI 239 (383)
T ss_pred HHHhh-------h-------------ccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCce
Confidence 00000 0 001111111 122 22348888774332222 4455555554 433 3445
Q ss_pred EEEcCCCCCCCCCCCchhHHHHhc--CCceee---cccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccch
Q 012314 303 WVVRPDITTDANDRYPEGFQERVA--ARGQMI---SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQ 377 (466)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~--~n~~~~---~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ 377 (466)
+++..... ..+.+-....+. +++++. +|.+...++.++.+ ++|-.|. ---||-..|+|++++=...|+
T Consensus 240 viyp~H~~----~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TER 312 (383)
T COG0381 240 VIYPVHPR----PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTER 312 (383)
T ss_pred EEEeCCCC----hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCC
Confidence 55544311 112121222333 457765 77888899988877 9997663 457999999999999888888
Q ss_pred hhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 012314 378 FLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKE 429 (466)
Q Consensus 378 ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~ 429 (466)
+. ++ ++ |.-+.+. .+.+.|.+++.++++++++.+|.+...-
T Consensus 313 PE---~v-~a-gt~~lvg------~~~~~i~~~~~~ll~~~~~~~~m~~~~n 353 (383)
T COG0381 313 PE---GV-EA-GTNILVG------TDEENILDAATELLEDEEFYERMSNAKN 353 (383)
T ss_pred cc---ce-ec-CceEEeC------ccHHHHHHHHHHHhhChHHHHHHhcccC
Confidence 87 34 33 6666664 4679999999999999888886554333
No 101
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.60 E-value=9.5e-05 Score=72.73 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=54.5
Q ss_pred cCCceeecccchh---hhhcCCCcccceec---cCC-chhhhhhhcCcceeecccccchhhhHHHHH---HhhhceeEee
Q 012314 326 AARGQMISWAPQL---RVLNHPSIACFLSH---CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYIC---DFWKVGLKFD 395 (466)
Q Consensus 326 ~~n~~~~~~~p~~---~ll~~~~~~~~i~h---gG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~---~~~G~G~~l~ 395 (466)
.+++.+.+++|+. .+|..+++ +|+- -|. -++.||+++|+|+|+.-..+.- ..-++ +. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCC-CceEEe-
Confidence 4678888998865 47877776 5542 222 4789999999999987433211 11122 32 567665
Q ss_pred cCCCCCcCHHHHHHHHHHHhcCH
Q 012314 396 RDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 396 ~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
. ++++++++|.++++++
T Consensus 377 ----~--d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ----S--TAEEYAEAIEKILSLS 393 (419)
T ss_pred ----C--CHHHHHHHHHHHHhCC
Confidence 2 7999999999999865
No 102
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.57 E-value=5e-07 Score=71.14 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=81.8
Q ss_pred eEEEEEeccccccC---HHHHHHHHHHHHhCCC-CEEEEEcCCCCCCCCCCCchhHHHHhc-CCcee--ecccch-hhhh
Q 012314 270 SVVYVSFGSFTILD---QVQFQELALGLELCKR-PFLWVVRPDITTDANDRYPEGFQERVA-ARGQM--ISWAPQ-LRVL 341 (466)
Q Consensus 270 ~~v~vs~Gs~~~~~---~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~-~n~~~--~~~~p~-~~ll 341 (466)
..+||+-||..... .-......+.+.+.|. +.|..++.+. ...++....... ....+ .+|-|- .+..
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~-----~~~~d~~~~~~k~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ-----PFFGDPIDLIRKNGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc-----cCCCCHHHhhcccCCeEEEEEecCccHHHHH
Confidence 38999999975321 1124446667777785 5677777661 222332221111 22222 377775 4577
Q ss_pred cCCCcccceeccCCchhhhhhhcCcceeeccc----ccchhhhHHHHHHhhhceeEeec
Q 012314 342 NHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY----FGDQFLNERYICDFWKVGLKFDR 396 (466)
Q Consensus 342 ~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~----~~DQ~~~a~rv~~~~G~G~~l~~ 396 (466)
..+++ +|+|+|+||++|.|..|+|.|+++- ...|-..|..+++ .|.=....+
T Consensus 79 ~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~p 134 (170)
T KOG3349|consen 79 RSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCTP 134 (170)
T ss_pred hhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEeec
Confidence 66776 9999999999999999999999995 4689999999998 488777754
No 103
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.51 E-value=7.8e-05 Score=72.27 Aligned_cols=79 Identities=13% Similarity=0.078 Sum_probs=52.8
Q ss_pred cCCceeecccchhh---hhcCCCcccce------eccCC-chhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEee
Q 012314 326 AARGQMISWAPQLR---VLNHPSIACFL------SHCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFD 395 (466)
Q Consensus 326 ~~n~~~~~~~p~~~---ll~~~~~~~~i------~hgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~ 395 (466)
.+|+.+.+++|+.+ ++.++++.++- +.++. +.+.|++++|+|+|+.++ ...++. +-|..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~--~~~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY--EDEVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh--cCcEEEe
Confidence 48999999998664 67777773332 22332 458999999999998753 222332 3344443
Q ss_pred cCCCCCcCHHHHHHHHHHHhcCH
Q 012314 396 RDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 396 ~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
. + +++++.++|.+++.++
T Consensus 324 ~---~--d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A---D--DPEEFVAAIEKALLED 341 (373)
T ss_pred C---C--CHHHHHHHHHHHHhcC
Confidence 1 2 7999999999976543
No 104
>PLN00142 sucrose synthase
Probab=98.51 E-value=4.7e-05 Score=78.69 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=47.2
Q ss_pred cee---ccCCc-hhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHH----hcCHHH
Q 012314 349 FLS---HCGWN-STMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQV----LGNQDF 420 (466)
Q Consensus 349 ~i~---hgG~~-s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~l----l~~~~~ 420 (466)
||. +-|.| ++.||+++|+|+|+.. .......|++. .-|..+++ -++++++++|.++ +.|++.
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATd----vGG~~EIV~dG-~tG~LV~P-----~D~eaLA~aI~~lLekLl~Dp~l 739 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATC----QGGPAEIIVDG-VSGFHIDP-----YHGDEAANKIADFFEKCKEDPSY 739 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCHHH
Confidence 664 24544 8899999999999974 44566666662 56888864 3678888887654 578776
Q ss_pred HHHHHH
Q 012314 421 KARALE 426 (466)
Q Consensus 421 r~~a~~ 426 (466)
+++..+
T Consensus 740 r~~mg~ 745 (815)
T PLN00142 740 WNKISD 745 (815)
T ss_pred HHHHHH
Confidence 665443
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=0.00037 Score=71.93 Aligned_cols=91 Identities=14% Similarity=0.156 Sum_probs=62.3
Q ss_pred cCCceeecccchh-hhhcCCCccccee---ccC-CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCC
Q 012314 326 AARGQMISWAPQL-RVLNHPSIACFLS---HCG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 400 (466)
Q Consensus 326 ~~n~~~~~~~p~~-~ll~~~~~~~~i~---hgG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 400 (466)
.+++.+.+|.+.. .++..+++ +|. +.| .+++.||+++|+|+|+... ......|.+. ..|..+++ +
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~dg-~~GlLv~~---~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQEG-VTGLTLPA---D 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccCC-CCEEEeCC---C
Confidence 3678888888753 58877777 554 455 4688999999999999854 3455566652 46888864 5
Q ss_pred CcCHHHHHHHHHHHhc----CHHHHHHHHH
Q 012314 401 IITREEIKNKVDQVLG----NQDFKARALE 426 (466)
Q Consensus 401 ~~~~~~l~~~i~~ll~----~~~~r~~a~~ 426 (466)
..+++++.+++.+++. ++.+++++++
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~ 672 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAAD 672 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHH
Confidence 5566777777766654 4556655443
No 106
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.45 E-value=5.9e-05 Score=75.39 Aligned_cols=164 Identities=15% Similarity=0.191 Sum_probs=86.2
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHh---CCCCEEEEEcCCCCCCCCCCCchhH---HHHhcCCcee-ecccch--hhh
Q 012314 270 SVVYVSFGSFTILDQVQFQELALGLEL---CKRPFLWVVRPDITTDANDRYPEGF---QERVAARGQM-ISWAPQ--LRV 340 (466)
Q Consensus 270 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~n~~~-~~~~p~--~~l 340 (466)
.++++..|... +...+..+++|+.. .+.+++++..+. ....+.+ .++.+.++.+ .+|-.. ..+
T Consensus 282 ~~~i~~vGRl~--~~KG~~~li~a~~~l~~~~~~lvivG~g~------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~ 353 (466)
T PRK00654 282 APLFAMVSRLT--EQKGLDLVLEALPELLEQGGQLVLLGTGD------PELEEAFRALAARYPGKVGVQIGYDEALAHRI 353 (466)
T ss_pred CcEEEEeeccc--cccChHHHHHHHHHHHhcCCEEEEEecCc------HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHH
Confidence 35666677653 33344455555533 356666554322 1111222 2233455543 355322 247
Q ss_pred hcCCCccccee---ccCCc-hhhhhhhcCcceeeccccc--chhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHH
Q 012314 341 LNHPSIACFLS---HCGWN-STMEGVSNGIPFLCWPYFG--DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQV 414 (466)
Q Consensus 341 l~~~~~~~~i~---hgG~~-s~~eal~~GvP~l~~P~~~--DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~l 414 (466)
++.+++ +|. +-|.| +.+||+++|+|+|+....+ |.-.....-.+. +.|..+++ -++++|+++|.++
T Consensus 354 ~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-----~d~~~la~~i~~~ 425 (466)
T PRK00654 354 YAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-----FNAEDLLRALRRA 425 (466)
T ss_pred HhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-----CCHHHHHHHHHHH
Confidence 777777 664 34554 7899999999999875432 211110000122 67888853 4789999999998
Q ss_pred hc---CHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012314 415 LG---NQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 455 (466)
Q Consensus 415 l~---~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~ 455 (466)
+. +++.++ ++++...+ ..-+-.+..++.++.+.+.
T Consensus 426 l~~~~~~~~~~---~~~~~~~~---~~fsw~~~a~~~~~lY~~~ 463 (466)
T PRK00654 426 LELYRQPPLWR---ALQRQAMA---QDFSWDKSAEEYLELYRRL 463 (466)
T ss_pred HHHhcCHHHHH---HHHHHHhc---cCCChHHHHHHHHHHHHHH
Confidence 85 333222 23332221 2344455556655555443
No 107
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.41 E-value=9.2e-05 Score=74.40 Aligned_cols=116 Identities=16% Similarity=0.066 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCCCCCchhHHHHhcC---Cceeecccchh-hhhcCCCcccceec-
Q 012314 283 DQVQFQELALGLELC-----KRPFLWVVRPDITTDANDRYPEGFQERVAA---RGQMISWAPQL-RVLNHPSIACFLSH- 352 (466)
Q Consensus 283 ~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---n~~~~~~~p~~-~ll~~~~~~~~i~h- 352 (466)
....+..++++++.+ +.+ ++++|.+ +..+.+...... ++.+.++.++. .++..+++ ||.-
T Consensus 557 ~EKGld~LLeAla~L~~~~pnvr-LvIVGDG-------P~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDV--FVlPS 626 (794)
T PLN02501 557 WAKGYRELIDLLAKHKNELDGFN-LDVFGNG-------EDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKV--FINPS 626 (794)
T ss_pred ccCCHHHHHHHHHHHHhhCCCeE-EEEEcCC-------ccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCE--EEECC
Confidence 344566666666432 233 3444544 223344333222 34455666655 48866666 7752
Q ss_pred --cC-CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHH
Q 012314 353 --CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFK 421 (466)
Q Consensus 353 --gG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r 421 (466)
-| ..+++||+++|+|+|+....+... +.+ |.+..+. -+.+++.++|.++|.++..+
T Consensus 627 ~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~------~D~EafAeAI~~LLsd~~~r 685 (794)
T PLN02501 627 ISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY------KTSEDFVAKVKEALANEPQP 685 (794)
T ss_pred CcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec------CCHHHHHHHHHHHHhCchhh
Confidence 23 467899999999999996654321 222 3333332 26899999999999887643
No 108
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=3.8e-05 Score=71.34 Aligned_cols=346 Identities=14% Similarity=0.075 Sum_probs=173.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCC-CCccHHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWE-DRNDLGKLI 82 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 82 (466)
+||++.+.-..|++. --.|.++|++|==+|.|++-.. +...+. +++-.. +..+ ....+.+.+
T Consensus 2 ~ki~i~AGE~SGDll-Ga~LikaLk~~~~~~efvGvgG--~~m~ae---------G~~sl~-----~~~elsvmGf~EVL 64 (381)
T COG0763 2 LKIALSAGEASGDLL-GAGLIKALKARYPDVEFVGVGG--EKMEAE---------GLESLF-----DMEELSVMGFVEVL 64 (381)
T ss_pred ceEEEEecccchhhH-HHHHHHHHHhhCCCeEEEEecc--HHHHhc---------cCcccc-----CHHHHHHhhHHHHH
Confidence 578888888888887 5677888887633777777643 223332 211110 0000 112222222
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEE-eCCCchhHHHHH---HHcC--CceEEecc-chhHHHHHHhhcccccccC
Q 012314 83 EKCLQVMPGKLEELIEEINSREDEKIDCFI-ADGNIGWSMEIA---KKMN--VRGAVFWP-SSAASVALVFRIPKLIDDG 155 (466)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV-~D~~~~~~~~~A---~~lg--iP~v~~~~-~~~~~~~~~~~~p~~~~~~ 155 (466)
..+ -......+++++.+.. .+||++| +|. .-....++ ++.| +|.|.|.. +-+.
T Consensus 65 ~~l-p~llk~~~~~~~~i~~---~kpD~~i~IDs-PdFnl~vak~lrk~~p~i~iihYV~PsVWA--------------- 124 (381)
T COG0763 65 GRL-PRLLKIRRELVRYILA---NKPDVLILIDS-PDFNLRVAKKLRKAGPKIKIIHYVSPSVWA--------------- 124 (381)
T ss_pred HHH-HHHHHHHHHHHHHHHh---cCCCEEEEeCC-CCCchHHHHHHHHhCCCCCeEEEECcceee---------------
Confidence 222 1123334555665555 7899988 454 22344444 4556 88887542 1110
Q ss_pred ccCCCCCCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhhccccEEEEcChhhccHHHHhhcCCcce
Q 012314 156 IIDSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTFPELLP 235 (466)
Q Consensus 156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s~~~le~~~~~~~p~v~~ 235 (466)
+ .+.+.. .....+|.++.--+++-++. ....-++.|
T Consensus 125 ----------------------W-----------r~~Ra~----------~i~~~~D~lLailPFE~~~y-~k~g~~~~y 160 (381)
T COG0763 125 ----------------------W-----------RPKRAV----------KIAKYVDHLLAILPFEPAFY-DKFGLPCTY 160 (381)
T ss_pred ----------------------e-----------chhhHH----------HHHHHhhHeeeecCCCHHHH-HhcCCCeEE
Confidence 0 011100 11245666666666554544 233334899
Q ss_pred ec-cccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCC
Q 012314 236 IG-PLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELC-----KRPFLWVVRPDI 309 (466)
Q Consensus 236 VG-pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~ 309 (466)
|| |+....+.. +..+.+..-+.-..+++++.+-.||-.+.=...+..+.++...+ +.+++.-+.+.
T Consensus 161 VGHpl~d~i~~~-------~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~- 232 (381)
T COG0763 161 VGHPLADEIPLL-------PDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNA- 232 (381)
T ss_pred eCChhhhhcccc-------ccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcH-
Confidence 99 555544321 22333444443334566999999986432233445555555333 35666555433
Q ss_pred CCCCCCCCchhHHHHhcCCc-eeecccc-h--hhhhcCCCcccceeccCCchhhhhhhcCcceeeccc-ccchhhhHHHH
Q 012314 310 TTDANDRYPEGFQERVAARG-QMISWAP-Q--LRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY-FGDQFLNERYI 384 (466)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~n~-~~~~~~p-~--~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~-~~DQ~~~a~rv 384 (466)
....+... ....+. ...-+++ + ...+..+++ .+.-+|. -++|+..+|+|||+.=- ..=-...+.++
T Consensus 233 ---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~l 303 (381)
T COG0763 233 ---KYRRIIEE---ALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRL 303 (381)
T ss_pred ---HHHHHHHH---HhhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHh
Confidence 11111111 111222 1222222 2 236655555 6655554 46899999999987521 11122233333
Q ss_pred HHhhhc--------eeEeecCC-CCCcCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 012314 385 CDFWKV--------GLKFDRDE-GGIITREEIKNKVDQVLGNQ----DFKARALELKEKAMSSVREGGSSYKTFQNFLQW 451 (466)
Q Consensus 385 ~~~~G~--------G~~l~~~~-~~~~~~~~l~~~i~~ll~~~----~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~ 451 (466)
.+ +.. |..+-|+= .+..+++.|++++.+++.|. .+++...+|++.++ ++++++...+-+++.
T Consensus 304 vk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~ 378 (381)
T COG0763 304 VK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLEL 378 (381)
T ss_pred cc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHH
Confidence 32 121 11111100 25678999999999999988 45555555555554 355655555555554
Q ss_pred H
Q 012314 452 V 452 (466)
Q Consensus 452 ~ 452 (466)
+
T Consensus 379 ~ 379 (381)
T COG0763 379 L 379 (381)
T ss_pred h
Confidence 3
No 109
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.36 E-value=0.00025 Score=71.19 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=85.9
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHH---hCCCCEEEEEcCCCCCCCCCCCchhH---HHHhcCCceeecccchh---hh
Q 012314 270 SVVYVSFGSFTILDQVQFQELALGLE---LCKRPFLWVVRPDITTDANDRYPEGF---QERVAARGQMISWAPQL---RV 340 (466)
Q Consensus 270 ~~v~vs~Gs~~~~~~~~~~~~~~a~~---~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~n~~~~~~~p~~---~l 340 (466)
.++++..|... +...+..+++++. +.+.++++...++ +...+.+ .++.+.++.+....+.. .+
T Consensus 291 ~~~i~~vGrl~--~~Kg~~~li~a~~~l~~~~~~lvi~G~g~------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 362 (473)
T TIGR02095 291 VPLFGVISRLT--QQKGVDLLLAALPELLELGGQLVVLGTGD------PELEEALRELAERYPGNVRVIIGYDEALAHLI 362 (473)
T ss_pred CCEEEEEecCc--cccChHHHHHHHHHHHHcCcEEEEECCCC------HHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Confidence 35666677653 2333444455543 3345555443322 1122222 22334566655444443 47
Q ss_pred hcCCCcccceec---cCCc-hhhhhhhcCcceeecccccchhhhHHHHHH-----hhhceeEeecCCCCCcCHHHHHHHH
Q 012314 341 LNHPSIACFLSH---CGWN-STMEGVSNGIPFLCWPYFGDQFLNERYICD-----FWKVGLKFDRDEGGIITREEIKNKV 411 (466)
Q Consensus 341 l~~~~~~~~i~h---gG~~-s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~-----~~G~G~~l~~~~~~~~~~~~l~~~i 411 (466)
+..+++ +|.- -|.| +.+||+++|+|+|+....+ ....+.+ .-+.|..+. .-++++|+++|
T Consensus 363 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~-----~~d~~~la~~i 431 (473)
T TIGR02095 363 YAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFE-----EYDPGALLAAL 431 (473)
T ss_pred HHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeC-----CCCHHHHHHHH
Confidence 766776 6642 3444 7799999999999875532 2222222 016788884 35789999999
Q ss_pred HHHhc----CHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012314 412 DQVLG----NQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 453 (466)
Q Consensus 412 ~~ll~----~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 453 (466)
.+++. +++.+++ +++... ...-+-.+..++.++.+.
T Consensus 432 ~~~l~~~~~~~~~~~~---~~~~~~---~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 432 SRALRLYRQDPSLWEA---LQKNAM---SQDFSWDKSAKQYVELYR 471 (473)
T ss_pred HHHHHHHhcCHHHHHH---HHHHHh---ccCCCcHHHHHHHHHHHH
Confidence 99986 5544433 222222 123444555566655544
No 110
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.36 E-value=0.00015 Score=72.84 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=70.9
Q ss_pred eEEEEEeccccccCHHHHHHHHHHH---HhCCCCEEEEEcCCCCCCCCCCCchhHHH---HhcCCceee-cccch--hhh
Q 012314 270 SVVYVSFGSFTILDQVQFQELALGL---ELCKRPFLWVVRPDITTDANDRYPEGFQE---RVAARGQMI-SWAPQ--LRV 340 (466)
Q Consensus 270 ~~v~vs~Gs~~~~~~~~~~~~~~a~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~n~~~~-~~~p~--~~l 340 (466)
..+++..|... +...+..+++++ .+.+.+++++..++ ....+.+.+ +...|+.+. .+... ..+
T Consensus 296 ~~~i~~vGrl~--~~Kg~~~li~a~~~l~~~~~~lvi~G~g~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 367 (476)
T cd03791 296 APLFGFVGRLT--EQKGIDLLLEALPELLELGGQLVILGSGD------PEYEEALRELAARYPGRVAVLIGYDEALAHLI 367 (476)
T ss_pred CCEEEEEeecc--ccccHHHHHHHHHHHHHcCcEEEEEecCC------HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Confidence 35666677653 223344444444 33345555544332 111122222 224666654 44322 246
Q ss_pred hcCCCcccceec---cCC-chhhhhhhcCcceeecccccchhhhHHHHHHh-----hhceeEeecCCCCCcCHHHHHHHH
Q 012314 341 LNHPSIACFLSH---CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDF-----WKVGLKFDRDEGGIITREEIKNKV 411 (466)
Q Consensus 341 l~~~~~~~~i~h---gG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~-----~G~G~~l~~~~~~~~~~~~l~~~i 411 (466)
+..+++ ++.- -|. .+.+||+++|+|+|+....+ ....+.+. -|.|..+++ -++++|.+++
T Consensus 368 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg----~~e~v~~~~~~~~~~~G~~~~~-----~~~~~l~~~i 436 (476)
T cd03791 368 YAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGG----LADTVIDYNEDTGEGTGFVFEG-----YNADALLAAL 436 (476)
T ss_pred HHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCC----ccceEeCCcCCCCCCCeEEeCC-----CCHHHHHHHH
Confidence 766666 6642 233 46799999999999876532 12222220 257998853 4689999999
Q ss_pred HHHhc
Q 012314 412 DQVLG 416 (466)
Q Consensus 412 ~~ll~ 416 (466)
.+++.
T Consensus 437 ~~~l~ 441 (476)
T cd03791 437 RRALA 441 (476)
T ss_pred HHHHH
Confidence 99885
No 111
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.22 E-value=0.00092 Score=66.98 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=90.2
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhC---CCCE-EEEEcCCCCCCCCCCCchhHHHHh-----cCCceeecccchhhhh
Q 012314 271 VVYVSFGSFTILDQVQFQELALGLELC---KRPF-LWVVRPDITTDANDRYPEGFQERV-----AARGQMISWAPQLRVL 341 (466)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~-i~~~~~~~~~~~~~~~~~~~~~~~-----~~n~~~~~~~p~~~ll 341 (466)
.+++..|... +...+..+++|+... ...+ +..+|.+ ...+.+.+.. .+++.+.++.+...++
T Consensus 320 ~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G-------~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~ 390 (500)
T TIGR02918 320 FSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTFDIYGEG-------GEKQKLQKIINENQAQDYIHLKGHRNLSEVY 390 (500)
T ss_pred eEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEEEEEECc-------hhHHHHHHHHHHcCCCCeEEEcCCCCHHHHH
Confidence 5666677653 334555566665332 2223 3344543 1123333221 3567777888878899
Q ss_pred cCCCccccee---ccCC-chhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecC--CCCCcC-HHHHHHHHHHH
Q 012314 342 NHPSIACFLS---HCGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRD--EGGIIT-REEIKNKVDQV 414 (466)
Q Consensus 342 ~~~~~~~~i~---hgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~--~~~~~~-~~~l~~~i~~l 414 (466)
..+++ +|. .-|. .+++||+++|+|+|+.... ......+++. .-|..++.. +.+.-+ .++|+++|.++
T Consensus 391 ~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~I~~l 464 (500)
T TIGR02918 391 KDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEKIVEY 464 (500)
T ss_pred HhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCccccchhHHHHHHHHHHHHH
Confidence 88777 664 3343 5889999999999998432 1344555552 568777531 001112 78899999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012314 415 LGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVK 453 (466)
Q Consensus 415 l~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 453 (466)
++++ .++ ++++..++. .+.-+....++++.+.+.
T Consensus 465 l~~~-~~~---~~~~~a~~~-a~~fs~~~v~~~w~~ll~ 498 (500)
T TIGR02918 465 FNSN-DID---AFHEYSYQI-AEGFLTANIIEKWKKLVR 498 (500)
T ss_pred hChH-HHH---HHHHHHHHH-HHhcCHHHHHHHHHHHHh
Confidence 9543 232 233333221 123444555555554443
No 112
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.22 E-value=8.9e-05 Score=72.73 Aligned_cols=111 Identities=17% Similarity=0.174 Sum_probs=75.9
Q ss_pred CCceeecccchhh---hhcCCCcccceeccC----CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCC
Q 012314 327 ARGQMISWAPQLR---VLNHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEG 399 (466)
Q Consensus 327 ~n~~~~~~~p~~~---ll~~~~~~~~i~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~ 399 (466)
.++.+.+|+++.+ ++..++++++|...- ..+++||+++|+|+|+. |-......+.+. +.|..+.
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas----~vgg~~e~i~~~-~~G~l~~---- 359 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIAT----NVGGTPEIVDNG-GNGLLLS---- 359 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeC----CCCCcHHHhcCC-CcEEEeC----
Confidence 4577789999764 555444555765432 46889999999999987 445566677662 4888884
Q ss_pred CCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 012314 400 GIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFL 449 (466)
Q Consensus 400 ~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v 449 (466)
..-+.++++++|.++++|++.+++ |++..++.+.+.-+......+++
T Consensus 360 ~~~~~~~la~~I~~ll~~~~~~~~---m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 360 KDPTPNELVSSLSKFIDNEEEYQT---MREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred CCCCHHHHHHHHHHHHhCHHHHHH---HHHHHHHHHHHHcCHHHhHHHhc
Confidence 345789999999999998866553 44444444444566666655554
No 113
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=1.8e-05 Score=61.36 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=81.1
Q ss_pred EEEEeccccccCHHHHHH--HHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCc-eee--cccchh-hhhcCCC
Q 012314 272 VYVSFGSFTILDQVQFQE--LALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARG-QMI--SWAPQL-RVLNHPS 345 (466)
Q Consensus 272 v~vs~Gs~~~~~~~~~~~--~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~-~~~--~~~p~~-~ll~~~~ 345 (466)
++||-||....=.+.+.. +..-.+...-++|+.+|+. +..| -|+ ++. ++-+-. .+-..++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~------d~kp--------vagl~v~~F~~~~kiQsli~dar 67 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG------DIKP--------VAGLRVYGFDKEEKIQSLIHDAR 67 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC------Cccc--------ccccEEEeechHHHHHHHhhcce
Confidence 789999873211222222 3333344456889999876 2222 122 344 444543 4776666
Q ss_pred cccceeccCCchhhhhhhcCcceeeccccc--------chhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHh
Q 012314 346 IACFLSHCGWNSTMEGVSNGIPFLCWPYFG--------DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 415 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~~GvP~l~~P~~~--------DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll 415 (466)
+ +|+|+|.||++.++..++|.|++|-.. .|-..|..+++ ++.=....+ .+..-.+-+...+.+++
T Consensus 68 I--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~sp--te~~L~a~l~~s~~~v~ 140 (161)
T COG5017 68 I--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSP--TELVLQAGLQVSVADVL 140 (161)
T ss_pred E--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcC--CchhhHHhHhhhhhhhc
Confidence 6 999999999999999999999999643 68888999988 688888865 22223344455555555
No 114
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.20 E-value=0.0014 Score=65.73 Aligned_cols=90 Identities=12% Similarity=0.097 Sum_probs=63.1
Q ss_pred cCCceeecccchhhhhcCCCcccceec----cCCchhhhhhhcCcceeecccccchhhhHHHHHHh----h-hceeEeec
Q 012314 326 AARGQMISWAPQLRVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDF----W-KVGLKFDR 396 (466)
Q Consensus 326 ~~n~~~~~~~p~~~ll~~~~~~~~i~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~----~-G~G~~l~~ 396 (466)
.+|+.+.+.....+++..+++ +|.- |-..++.||+++|+|+|+. |.......+.+. + ..|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~- 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVP- 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEEC-
Confidence 367777775555678876666 5533 3356899999999999996 444455555441 0 2687774
Q ss_pred CCCCCcCHHHHHHHHHHHhcCHHHHHHHHH
Q 012314 397 DEGGIITREEIKNKVDQVLGNQDFKARALE 426 (466)
Q Consensus 397 ~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~ 426 (466)
.-+.++++++|.++++|++.++++.+
T Consensus 426 ----~~d~~~la~ai~~ll~~~~~~~~~~~ 451 (475)
T cd03813 426 ----PADPEALARAILRLLKDPELRRAMGE 451 (475)
T ss_pred ----CCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 35799999999999999876665443
No 115
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.09 E-value=0.00039 Score=67.34 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=62.3
Q ss_pred cCCceeecccchh-hhhcCCCcccceec--cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCc
Q 012314 326 AARGQMISWAPQL-RVLNHPSIACFLSH--CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGII 402 (466)
Q Consensus 326 ~~n~~~~~~~p~~-~ll~~~~~~~~i~h--gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~ 402 (466)
.+++.+.++.++. .++..+++-++.++ |...++.||+++|+|+|+..... .....+.+. ..|..++ .-
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~-----~~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVP-----KG 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeC-----CC
Confidence 3567777776654 58888887444444 33468999999999999974331 234445553 6788874 35
Q ss_pred CHHHHHHHHHHHhcCHHHHHHH
Q 012314 403 TREEIKNKVDQVLGNQDFKARA 424 (466)
Q Consensus 403 ~~~~l~~~i~~ll~~~~~r~~a 424 (466)
+.++++++|.++++|++.++++
T Consensus 331 d~~~la~~i~~ll~~~~~~~~~ 352 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQKF 352 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHHH
Confidence 7999999999999987544433
No 116
>PLN02316 synthase/transferase
Probab=98.03 E-value=0.02 Score=61.32 Aligned_cols=118 Identities=8% Similarity=0.029 Sum_probs=67.1
Q ss_pred CCceeecccchh---hhhcCCCcccceec---cC-CchhhhhhhcCcceeeccccc--chhhh-------HHHHHHhhhc
Q 012314 327 ARGQMISWAPQL---RVLNHPSIACFLSH---CG-WNSTMEGVSNGIPFLCWPYFG--DQFLN-------ERYICDFWKV 390 (466)
Q Consensus 327 ~n~~~~~~~p~~---~ll~~~~~~~~i~h---gG-~~s~~eal~~GvP~l~~P~~~--DQ~~~-------a~rv~~~~G~ 390 (466)
+++.+....+.. .++..+++ |+.- =| ..+.+||+++|+|.|+....+ |.-.. ++..-. -+-
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~-~~t 976 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGL-EPN 976 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccccccccccc-CCc
Confidence 455555333432 47766666 7742 23 347899999999998875432 22111 110000 146
Q ss_pred eeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012314 391 GLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKT 454 (466)
Q Consensus 391 G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~ 454 (466)
|..++ .-+++.|..+|.+++.+ |.+....+++..+..+...-+-.+...+.++.+..
T Consensus 977 Gflf~-----~~d~~aLa~AL~raL~~--~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 977 GFSFD-----GADAAGVDYALNRAISA--WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred eEEeC-----CCCHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 88874 45899999999999964 23333344555554443344545555555555443
No 117
>PRK14099 glycogen synthase; Provisional
Probab=97.98 E-value=0.0078 Score=60.31 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCC------CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 1 MSRPRVLVMPAP------AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 1 m~~~~il~~~~~------~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
|+++||++++.- ..|=-..+-+|.++|+++||+|.++.+..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 899999999832 33555678899999999999999999954
No 118
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.93 E-value=0.0042 Score=60.77 Aligned_cols=114 Identities=11% Similarity=-0.040 Sum_probs=64.9
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCCCCCchhHHHHhcCCceeecccc-h---hhhhcCCCc
Q 012314 272 VYVSFGSFTILDQVQFQELALGLELCKRPF-LWVVRPDITTDANDRYPEGFQERVAARGQMISWAP-Q---LRVLNHPSI 346 (466)
Q Consensus 272 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p-~---~~ll~~~~~ 346 (466)
+++..|.....+......+++|+..++.++ ++.+|.. . ... .+++...++.. + ..+++.+++
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g----~-~~~--------~~~v~~~g~~~~~~~l~~~y~~aDv 309 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKF----S-PFT--------AGNVVNHGFETDKRKLMSALNQMDA 309 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCC----C-ccc--------ccceEEecCcCCHHHHHHHHHhCCE
Confidence 344445422223334577888887766543 3444433 0 000 23444455543 2 345655665
Q ss_pred ccceec----cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHH
Q 012314 347 ACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKV 411 (466)
Q Consensus 347 ~~~i~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i 411 (466)
||.- |-..+++||+++|+|+|+....+ ....+.+ +-|..+++ -+.++|++.+
T Consensus 310 --fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 310 --LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred --EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECC-----CCHHHHHhcc
Confidence 6652 33568899999999999996654 3333333 67888864 3677888754
No 119
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.91 E-value=7.4e-05 Score=63.65 Aligned_cols=89 Identities=20% Similarity=0.272 Sum_probs=67.0
Q ss_pred cCCceeecccch---hhhhcCCCcccceec----cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCC
Q 012314 326 AARGQMISWAPQ---LRVLNHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 398 (466)
Q Consensus 326 ~~n~~~~~~~p~---~~ll~~~~~~~~i~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 398 (466)
.+++.+.+++++ ..++..+++ +|+. |...++.||+++|+|+|+. +...+...+.+. +.|..++.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC--
Confidence 468888899883 358877777 7765 5567899999999999987 666777777773 67999853
Q ss_pred CCCcCHHHHHHHHHHHhcCHHHHHHHHH
Q 012314 399 GGIITREEIKNKVDQVLGNQDFKARALE 426 (466)
Q Consensus 399 ~~~~~~~~l~~~i~~ll~~~~~r~~a~~ 426 (466)
-+.+++.++|.+++++++.++++.+
T Consensus 143 ---~~~~~l~~~i~~~l~~~~~~~~l~~ 167 (172)
T PF00534_consen 143 ---NDIEELADAIEKLLNDPELRQKLGK 167 (172)
T ss_dssp ---TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHCCHHHHHHHHH
Confidence 3999999999999998866665444
No 120
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.90 E-value=0.00067 Score=65.90 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=73.2
Q ss_pred hcCCceeecccchh---hhhcCCCcccceec----cCC-chhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeec
Q 012314 325 VAARGQMISWAPQL---RVLNHPSIACFLSH----CGW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 396 (466)
Q Consensus 325 ~~~n~~~~~~~p~~---~ll~~~~~~~~i~h----gG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~ 396 (466)
...++.+.+++|+. .++..+++ +|.. .|. .++.||+++|+|+|+... ..+...+++. ..|..+.
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~-~~G~~l~- 326 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEG-ITGYHLA- 326 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccC-CceEEEe-
Confidence 35677788999864 46877777 6642 343 567899999999999854 3455556553 5687553
Q ss_pred CCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 012314 397 DEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 452 (466)
Q Consensus 397 ~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~ 452 (466)
...++++|+++|.++++|++.++ +++..++.+.+.-+-....+++.+.+
T Consensus 327 ---~~~d~~~la~~I~~ll~d~~~~~----~~~~ar~~~~~~fsw~~~a~~~~~~l 375 (380)
T PRK15484 327 ---EPMTSDSIISDINRTLADPELTQ----IAEQAKDFVFSKYSWEGVTQRFEEQI 375 (380)
T ss_pred ---CCCCHHHHHHHHHHHHcCHHHHH----HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33579999999999999987533 33333333223444444445554444
No 121
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.89 E-value=0.00038 Score=67.67 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=84.4
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHh------cCCceeecccchhhh-
Q 012314 268 PSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV------AARGQMISWAPQLRV- 340 (466)
Q Consensus 268 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~n~~~~~~~p~~~l- 340 (466)
++.++|.+|.......++.++...+.++..+.-.+|...... .-.+.+.+.. ++++.+.++.|+.+.
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~------~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl 356 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA------SGEARLRRRFAAHGVDPDRIIFSPVAPREEHL 356 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST------THHHHHHHHHHHTTS-GGGEEEEE---HHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH------HHHHHHHHHHHHcCCChhhEEEcCCCCHHHHH
Confidence 455999999998888999999999999999998888876441 1112333222 355666677675543
Q ss_pred --hcCCCcccce---eccCCchhhhhhhcCcceeeccccc-chhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHH
Q 012314 341 --LNHPSIACFL---SHCGWNSTMEGVSNGIPFLCWPYFG-DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQV 414 (466)
Q Consensus 341 --l~~~~~~~~i---~hgG~~s~~eal~~GvP~l~~P~~~-DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~l 414 (466)
+...++ ++ ..+|.+|++|||++|||+|..|-.. =...-+..+.. +|+...+-. +.++-.+.-.++
T Consensus 357 ~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~------s~~eYv~~Av~L 427 (468)
T PF13844_consen 357 RRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD------SEEEYVEIAVRL 427 (468)
T ss_dssp HHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S------SHHHHHHHHHHH
T ss_pred HHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC------CHHHHHHHHHHH
Confidence 333444 44 4678899999999999999999532 33334445555 688888752 455555555577
Q ss_pred hcCHHHHHHHHHHHHHHHH
Q 012314 415 LGNQDFKARALELKEKAMS 433 (466)
Q Consensus 415 l~~~~~r~~a~~~~~~~~~ 433 (466)
-+|.+++++ +++++++
T Consensus 428 a~D~~~l~~---lR~~Lr~ 443 (468)
T PF13844_consen 428 ATDPERLRA---LRAKLRD 443 (468)
T ss_dssp HH-HHHHHH---HHHHHHH
T ss_pred hCCHHHHHH---HHHHHHH
Confidence 778777664 3444444
No 122
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.81 E-value=0.021 Score=57.01 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=46.4
Q ss_pred cCCceeecccchh-hhhcCCCccccee---ccC-CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeec
Q 012314 326 AARGQMISWAPQL-RVLNHPSIACFLS---HCG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDR 396 (466)
Q Consensus 326 ~~n~~~~~~~p~~-~ll~~~~~~~~i~---hgG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~ 396 (466)
.+++.+.+|.... .+|..+++ ||. +-| .+++.||+++|+|+|+.. -..+...+.+. ..|..+++
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATd----vGG~~EiV~dG-~nG~LVp~ 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTP----AGGSAECFIEG-VSGFILDD 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeC----CCCcHHHcccC-CcEEEECC
Confidence 3678888886543 47877777 775 344 468899999999999884 34566667663 77888864
No 123
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.74 E-value=0.0028 Score=56.14 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=35.3
Q ss_pred cCCceeecccch-h---hhhcCCCcccceeccC----CchhhhhhhcCcceeecccccc
Q 012314 326 AARGQMISWAPQ-L---RVLNHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFGD 376 (466)
Q Consensus 326 ~~n~~~~~~~p~-~---~ll~~~~~~~~i~hgG----~~s~~eal~~GvP~l~~P~~~D 376 (466)
..|+.+.++++. . .++..+++ +++-.. .+++.||+++|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 467778888632 2 34443555 777665 6899999999999999876543
No 124
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.67 E-value=0.066 Score=52.40 Aligned_cols=210 Identities=12% Similarity=0.112 Sum_probs=110.5
Q ss_pred hccccEEEEcChhhccHHHHhhc---CCcceec-cccCCCCCCCCCCCcc-cCCccchhhhccCCCCeEEEEEecccccc
Q 012314 208 MIAVNFHFCNSTYELESEAFTTF---PELLPIG-PLLASNRLGNTAGYFW-CEDSNCLKWLDQQQPSSVVYVSFGSFTIL 282 (466)
Q Consensus 208 ~~~~~~vl~~s~~~le~~~~~~~---p~v~~VG-pl~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~ 282 (466)
+.+++.|.+....+.+.- ..+. +++..+. |.+.-++.. .. .....+..|+....+++.|.|+.-.....
T Consensus 174 l~~~~~ItvRD~~S~~~L-k~lGv~~~~v~~~aDpAF~L~~~~-----~~~~~~~~~~~~~~~~~~~~~Vgisvr~~~~~ 247 (426)
T PRK10017 174 FGHCDALILRESVSLDLM-KRSNITTAKVEHGVDTAWLVDHHT-----EDFTASYAVQHWLDVAAQQKTVAITLRELAPF 247 (426)
T ss_pred HhcCCEEEEccHHHHHHH-HHhCCCccceEEecChhhhCCccc-----cccccchhhhhhhcccccCCEEEEEecccccc
Confidence 457788888877776654 3331 3333322 222211110 00 00011223444333455788876533211
Q ss_pred ------C-HHH---HHHHHHHHHhCCCCEEEEEcCC-CCC-CCCCC-CchhHHHHhc--CCceee--cccchh--hhhcC
Q 012314 283 ------D-QVQ---FQELALGLELCKRPFLWVVRPD-ITT-DANDR-YPEGFQERVA--ARGQMI--SWAPQL--RVLNH 343 (466)
Q Consensus 283 ------~-~~~---~~~~~~a~~~~~~~~i~~~~~~-~~~-~~~~~-~~~~~~~~~~--~n~~~~--~~~p~~--~ll~~ 343 (466)
. .+. +..+++.+...|+++++.---. .+. ...+. .-..+.+.+. ++..++ ++-|.. .++++
T Consensus 248 ~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~ 327 (426)
T PRK10017 248 DKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGA 327 (426)
T ss_pred cccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhh
Confidence 1 222 3344455555588877654211 000 00000 0123333433 233333 333443 68866
Q ss_pred CCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeE-eecCCCCCcCHHHHHHHHHHHhcCH-HHH
Q 012314 344 PSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLK-FDRDEGGIITREEIKNKVDQVLGNQ-DFK 421 (466)
Q Consensus 344 ~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~-l~~~~~~~~~~~~l~~~i~~ll~~~-~~r 421 (466)
+++ +|..= .=+..-|+.+|+|+++++. | +....-+.+ +|.... .+. +.++.++|.+.+.++++|. .++
T Consensus 328 ~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~---~~l~~~~Li~~v~~~~~~r~~~~ 397 (426)
T PRK10017 328 CEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDI---RHLLDGSLQAMVADTLGQLPALN 397 (426)
T ss_pred CCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEech---hhCCHHHHHHHHHHHHhCHHHHH
Confidence 665 88732 2257788999999999986 3 333444466 688877 443 7889999999999999875 567
Q ss_pred HHHHHHHHHHHH
Q 012314 422 ARALELKEKAMS 433 (466)
Q Consensus 422 ~~a~~~~~~~~~ 433 (466)
++.++--++++.
T Consensus 398 ~~l~~~v~~~r~ 409 (426)
T PRK10017 398 ARLAEAVSRERQ 409 (426)
T ss_pred HHHHHHHHHHHH
Confidence 666655555554
No 125
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.65 E-value=0.0083 Score=56.75 Aligned_cols=135 Identities=12% Similarity=0.060 Sum_probs=77.7
Q ss_pred CCeEEEEEeccc---cccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeecc--cch-hhhh
Q 012314 268 PSSVVYVSFGSF---TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISW--APQ-LRVL 341 (466)
Q Consensus 268 ~~~~v~vs~Gs~---~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~--~p~-~~ll 341 (466)
+++.|.+..|+. ..++.+.+.++++.+.+.++++++..++. .+....+.+.+..+ +..+.+- +++ ..++
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~----~e~~~~~~i~~~~~-~~~l~g~~sL~el~ali 252 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGND----AEKQRAERIAEALP-GAVVLPKMSLAEVAALL 252 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCH----HHHHHHHHHHhhCC-CCeecCCCCHHHHHHHH
Confidence 345676667754 45778888899888876677777665533 11111222332222 2233333 333 3588
Q ss_pred cCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhcee-EeecCCCCCcCHHHHHHHHHHHh
Q 012314 342 NHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGL-KFDRDEGGIITREEIKNKVDQVL 415 (466)
Q Consensus 342 ~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~-~l~~~~~~~~~~~~l~~~i~~ll 415 (466)
+++++ +|+. -.|.+.=|.+.|+|+|++=-.. +..+-.= +|-.. .+....-..++++++.+++.++|
T Consensus 253 ~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t----~p~~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 253 AGADA--VVGV-DTGLTHLAAALDKPTVTLYGAT----DPGRTGG-YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HcCCE--EEeC-CChHHHHHHHcCCCEEEEECCC----CHhhccc-CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 77776 8887 5678888999999999862111 1111111 12111 11111137899999999998875
No 126
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.21 E-value=0.00096 Score=54.14 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=49.6
Q ss_pred cCCceeecccchh-hhhcCCCcccceec--cC-CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCC
Q 012314 326 AARGQMISWAPQL-RVLNHPSIACFLSH--CG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 401 (466)
Q Consensus 326 ~~n~~~~~~~p~~-~ll~~~~~~~~i~h--gG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~ 401 (466)
.+|+.+.+|++.. ++++.+++.+..+. .| .+++.|++++|+|+|+.+. .....++. .+.|..+. +
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~-~~~~~~~~----~- 120 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEE-DGCGVLVA----N- 120 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE-T----T-
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheee-cCCeEEEC----C-
Confidence 5799999998743 58888888555442 22 4789999999999999865 12223333 37887773 2
Q ss_pred cCHHHHHHHHHHHhcC
Q 012314 402 ITREEIKNKVDQVLGN 417 (466)
Q Consensus 402 ~~~~~l~~~i~~ll~~ 417 (466)
+++++.++|.++++|
T Consensus 121 -~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 121 -DPEELAEAIERLLND 135 (135)
T ss_dssp --HHHHHHHHHHHHH-
T ss_pred -CHHHHHHHHHHHhcC
Confidence 899999999999865
No 127
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.02 E-value=0.0025 Score=60.74 Aligned_cols=109 Identities=13% Similarity=0.237 Sum_probs=77.5
Q ss_pred hcCCceeecccchhhh---hcCCCcccceec-------cC------CchhhhhhhcCcceeecccccchhhhHHHHHHhh
Q 012314 325 VAARGQMISWAPQLRV---LNHPSIACFLSH-------CG------WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFW 388 (466)
Q Consensus 325 ~~~n~~~~~~~p~~~l---l~~~~~~~~i~h-------gG------~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~ 388 (466)
..+|+.+.+|+|+.++ |.. +.+++... +. .+-+.+.+++|+|+|+. ++...+..|++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~- 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN- 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-
Confidence 3578889999998765 433 22222111 11 12267789999999986 667888899885
Q ss_pred hceeEeecCCCCCcCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 012314 389 KVGLKFDRDEGGIITREEIKNKVDQVLGNQ--DFKARALELKEKAMSSVREGGSSYKTFQNFLQ 450 (466)
Q Consensus 389 G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~--~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~ 450 (466)
++|..++ +.+++.+++.++..+. .++++++++++++++ |.-....+++++.
T Consensus 279 ~~G~~v~-------~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 279 GLGFVVD-------SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred CceEEeC-------CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 9999994 5678999998865322 578999999999987 6655777766654
No 128
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.02 E-value=0.012 Score=47.90 Aligned_cols=103 Identities=16% Similarity=0.245 Sum_probs=66.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
||++++.....| ...+++.|.++||+|++++........... .++.++.++.... ....+.
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~~~k------~~~~~~-- 61 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPSPRK------SPLNYI-- 61 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecCCCC------ccHHHH--
Confidence 578888777666 457799999999999999996554333322 5788888753311 111111
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch---hHHHHHHHcC-CceEEecc
Q 012314 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGNIG---WSMEIAKKMN-VRGAVFWP 136 (466)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~---~~~~~A~~lg-iP~v~~~~ 136 (466)
. .. .+..+++. .+||+|.+-.... .+..++...+ +|.+...+
T Consensus 62 --~-~~-~l~k~ik~------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 62 --K-YF-RLRKIIKK------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred --H-HH-HHHHHhcc------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 1 11 34555555 7899998776443 3445667788 88887543
No 129
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.87 E-value=0.079 Score=49.02 Aligned_cols=102 Identities=15% Similarity=0.126 Sum_probs=66.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHhhhcCCCCCCCeEEE-ecCCCCCCCCCCccHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYNHKRVVESLQGKNYLGEQIHLV-SIPDGMEPWEDRNDLGKL 81 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rG--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 81 (466)
||+++-..+-|++.-+..+.++|+++. -+|++++...+.+.++.. +.++-+ .++.. ..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~----~~------- 61 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM--------PEVDRVIVLPKK----HG------- 61 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC--------CccCEEEEcCCc----cc-------
Confidence 588899899999999999999999974 899999998877766543 233322 22211 00
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEE
Q 012314 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (466)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~ 133 (466)
......+.+++..++. .++|+++.-........++...+++...
T Consensus 62 -----~~~~~~~~~~~~~l~~---~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 62 -----KLGLGARRRLARALRR---RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred -----ccchHHHHHHHHHHhh---cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 0011234455556655 7899999776555444455555665543
No 130
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.80 E-value=0.086 Score=50.61 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhhcCCCCCCCeEE-EecCCCCCCCCCCccHH
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHL-VSIPDGMEPWEDRNDLG 79 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (466)
++|||++-..+-|++.-...+.++|+++ +.+|++++.+.+.+.++.. +.++- +.++.. . ...
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~~~--~----~~~- 69 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIKNK--K----AGA- 69 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEeccc--c----ccH-
Confidence 3689999999999999999999999986 7999999998887766543 34432 222211 0 000
Q ss_pred HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEE
Q 012314 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (466)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~ 133 (466)
... ...+.++++.+++ .++|++|.-........++...|.|..+
T Consensus 70 --~~~-----~~~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 70 --SEK-----IKNFFSLIKVLRA---NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred --HHH-----HHHHHHHHHHHhh---CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 000 1123455566666 7899999654444455566666777654
No 131
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.77 E-value=0.073 Score=50.95 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=69.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhhcCCCCCCCeE-EEecCCCCCCCCCCccHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIH-LVSIPDGMEPWEDRNDLGKL 81 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 81 (466)
||+++-..+-|++.-+..+.++|+++ +.+|++++.+.+.+.++.. +.++ ++.++.... ....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~~~----~~~~--- 65 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDRKKA----KAGE--- 65 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeChhhh----cchH---
Confidence 58899999999999999999999985 7999999998887766544 3443 233331100 0000
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEE
Q 012314 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (466)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~ 133 (466)
..+ ..+.+++..+++ .++|++|.-........++...|.|.-+
T Consensus 66 -~~~-----~~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 66 -RKL-----ANQFHLIKVLRA---NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred -HHH-----HHHHHHHHHHHh---CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 001 112334555655 7899999665455667788888888654
No 132
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.76 E-value=0.14 Score=49.01 Aligned_cols=103 Identities=11% Similarity=0.047 Sum_probs=70.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEe-cCCCCCCCCCCccHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVS-IPDGMEPWEDRNDLGK 80 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (466)
|||+++-..+-|++.-...+.++|+++ +.+|++++.+.+.+.++.. +.++-+- ++.. .. . ..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~~~~~--~~--~---~~ 65 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIPMPLG--HG--A---LE 65 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEecccc--cc--h---hh
Confidence 479999999999999999999999985 8999999998877766544 3444322 2211 00 0 00
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEE
Q 012314 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~ 133 (466)
.....++++.+++ .++|++|.=....-...++...|+|.-+
T Consensus 66 ---------~~~~~~l~~~lr~---~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 66 ---------IGERRRLGHSLRE---KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---------hHHHHHHHHHHHh---cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0123455566666 7899999765455566677777887654
No 133
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.02 Score=56.10 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=89.6
Q ss_pred CCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHh------cCCceeecccchh--
Q 012314 267 QPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERV------AARGQMISWAPQL-- 338 (466)
Q Consensus 267 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~n~~~~~~~p~~-- 338 (466)
+++.+||+||+......++.+......++..+-.++|..+++. .+.+.+.+++.. .+..++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~----~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD----DAEINARLRDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC----cHHHHHHHHHHHHHcCCChhheeecCCCCCHHH
Confidence 4466999999999888999999999999999999999998752 122333333222 1344455555543
Q ss_pred -hhhcCCCccccee---ccCCchhhhhhhcCcceeecccccchhh--hHHHHHHhhhceeEeecCCCCCcCHHHHHHHHH
Q 012314 339 -RVLNHPSIACFLS---HCGWNSTMEGVSNGIPFLCWPYFGDQFL--NERYICDFWKVGLKFDRDEGGIITREEIKNKVD 412 (466)
Q Consensus 339 -~ll~~~~~~~~i~---hgG~~s~~eal~~GvP~l~~P~~~DQ~~--~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~ 412 (466)
+-++.+++ |+- -||..|..|+|..|||||.. .++|+. |+.-+...+|+-..+-. -..+-+..+|.
T Consensus 503 ~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~--~G~~FasR~~~si~~~agi~e~vA~-----s~~dYV~~av~ 573 (620)
T COG3914 503 RARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTR--VGEQFASRNGASIATNAGIPELVAD-----SRADYVEKAVA 573 (620)
T ss_pred HHhhchhhe--eeecccCCCccchHHHHHhcCceeee--ccHHHHHhhhHHHHHhcCCchhhcC-----CHHHHHHHHHH
Confidence 44455665 664 89999999999999999987 467765 44444433455555532 23455666664
Q ss_pred H
Q 012314 413 Q 413 (466)
Q Consensus 413 ~ 413 (466)
-
T Consensus 574 ~ 574 (620)
T COG3914 574 F 574 (620)
T ss_pred h
Confidence 3
No 134
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.63 E-value=0.062 Score=51.13 Aligned_cols=105 Identities=16% Similarity=0.123 Sum_probs=73.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHH
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK 80 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rG--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
++||+++-..+-|++.-.+.+-+.|+++. .++++++...+.+.+... +.++-+-.-.. ....
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~~~-----~~~~--- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIIIDK-----KKKG--- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhccccc-----cccc---
Confidence 46899999999999999999999999985 999999998887776543 23333221100 0000
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEE
Q 012314 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~ 133 (466)
.......++.+.+++ .++|+||.=....-...++...++|.-.
T Consensus 65 -------~~~~~~~~l~~~lr~---~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 -------LGLKERLALLRTLRK---ERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred -------cchHHHHHHHHHhhc---cCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 123345556666665 7899999877666677777788888766
No 135
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.62 E-value=0.042 Score=52.04 Aligned_cols=132 Identities=11% Similarity=0.024 Sum_probs=75.7
Q ss_pred CeEEEEEecc-c--cccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeecc--cch-hhhhc
Q 012314 269 SSVVYVSFGS-F--TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISW--APQ-LRVLN 342 (466)
Q Consensus 269 ~~~v~vs~Gs-~--~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~--~p~-~~ll~ 342 (466)
++.|.+..|+ . ..++.+.+.++++.+...+.++++..++. .+...-+.+.+. .+++.+.+- +.+ ..+++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~----~e~~~~~~i~~~-~~~~~l~g~~sL~elaali~ 252 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAE----HEEQRAKRLAEG-FPYVEVLPKLSLEQVARVLA 252 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCH----HHHHHHHHHHcc-CCcceecCCCCHHHHHHHHH
Confidence 3355444454 3 35788889999988876677776554433 111111222211 123334332 333 35887
Q ss_pred CCCcccceeccCCchhhhhhhcCcceeecccccchhhh------HHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhc
Q 012314 343 HPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLN------ERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLG 416 (466)
Q Consensus 343 ~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~------a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~ 416 (466)
++++ +|+. -.|.+.=|.+.|+|+|++=-..+...+ ...+. -.+.++ ..++++++.++++++|+
T Consensus 253 ~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~---~~~~cm-----~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 253 GAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACR---SPGKSM-----ADLSAETVFQKLETLIS 321 (322)
T ss_pred hCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeec---CCCccc-----ccCCHHHHHHHHHHHhh
Confidence 7777 9987 567889999999999987322222111 11111 011223 57899999999988873
No 136
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.58 E-value=0.27 Score=46.82 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=67.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhhhcCCCCCCCeEE-EecCCCCCCCCCCccHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHL-VSIPDGMEPWEDRNDLGKL 81 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 81 (466)
||+++-..+-|++.-...+.++|++. +.+|++++.+.+...++.. +.++- +.++.. .. . ..+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~--~~--~---~~~ 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMPLG--HG--A---LEL 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecCCc--cc--c---hhh
Confidence 58999999999999999999999986 8999999998776666543 23332 222211 00 0 000
Q ss_pred HHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEE
Q 012314 82 IEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (466)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~ 133 (466)
....++++.+++ .++|++|.-........++...|+|.-+
T Consensus 66 ---------~~~~~~~~~lr~---~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 66 ---------TERRRLGRSLRE---ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ---------hHHHHHHHHHhh---cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 122345555655 7899999876555566677777887543
No 137
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.53 E-value=0.073 Score=49.72 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=64.2
Q ss_pred CeEEEEEeccc---cccCHHH----HHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHH----hc--CCceeec--
Q 012314 269 SSVVYVSFGSF---TILDQVQ----FQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQER----VA--ARGQMIS-- 333 (466)
Q Consensus 269 ~~~v~vs~Gs~---~~~~~~~----~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~--~n~~~~~-- 333 (466)
++.+.|-.|.- ..++.+. +..+....+..+..+.++.+.. .|+..++. .. +.+.+.+
T Consensus 146 ~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRR--------Tp~~~~~~L~~~~~~~~~~~~~~~~ 217 (311)
T PF06258_consen 146 RPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRR--------TPPEAEAALRELLKDNPGVYIWDGT 217 (311)
T ss_pred CCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCC--------CcHHHHHHHHHhhcCCCceEEecCC
Confidence 45666666632 2344543 3344444455565555554433 44443332 22 2232322
Q ss_pred -ccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhh----hHHHHHHhhhceeEee
Q 012314 334 -WAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFL----NERYICDFWKVGLKFD 395 (466)
Q Consensus 334 -~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~----~a~rv~~~~G~G~~l~ 395 (466)
.=|+..+|..++. .+||---.+-+.||+..|+|+.++|... +.. ....+++ .|+-..+.
T Consensus 218 ~~nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~ 281 (311)
T PF06258_consen 218 GENPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFT 281 (311)
T ss_pred CCCcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECC
Confidence 2256678877776 3445545577799999999999999876 333 3344555 36666664
No 138
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.45 E-value=0.0064 Score=45.69 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=42.9
Q ss_pred ccchhhhccCCCCeEEEEEecccccc---CH--HHHHHHHHHHHhCCCCEEEEEcCC
Q 012314 257 SNCLKWLDQQQPSSVVYVSFGSFTIL---DQ--VQFQELALGLELCKRPFLWVVRPD 308 (466)
Q Consensus 257 ~~l~~~~~~~~~~~~v~vs~Gs~~~~---~~--~~~~~~~~a~~~~~~~~i~~~~~~ 308 (466)
..+..|+.+.+.++.|++|+||.... .. ..+..++++++.++.++|......
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 34558999988999999999987432 22 479999999999999999999765
No 139
>PHA01633 putative glycosyl transferase group 1
Probab=96.30 E-value=0.04 Score=51.95 Aligned_cols=83 Identities=11% Similarity=0.041 Sum_probs=54.1
Q ss_pred cCCceee---cccchh---hhhcCCCcccceec---cC-CchhhhhhhcCcceeeccc------ccch------hhhHHH
Q 012314 326 AARGQMI---SWAPQL---RVLNHPSIACFLSH---CG-WNSTMEGVSNGIPFLCWPY------FGDQ------FLNERY 383 (466)
Q Consensus 326 ~~n~~~~---~~~p~~---~ll~~~~~~~~i~h---gG-~~s~~eal~~GvP~l~~P~------~~DQ------~~~a~r 383 (466)
++++.+. +++++. .++..+++ ||.- -| ..+++||+++|+|+|+.-. .+|+ .++..-
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4677776 455543 57767776 7753 34 4578999999999998733 2232 222222
Q ss_pred HH--HhhhceeEeecCCCCCcCHHHHHHHHHHHhc
Q 012314 384 IC--DFWKVGLKFDRDEGGIITREEIKNKVDQVLG 416 (466)
Q Consensus 384 v~--~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~ 416 (466)
.. + .|.|..+ +..++++++++|.+++.
T Consensus 278 ~~~~~-~g~g~~~-----~~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 278 YYDKE-HGQKWKI-----HKFQIEDMANAIILAFE 306 (335)
T ss_pred hcCcc-cCceeee-----cCCCHHHHHHHHHHHHh
Confidence 22 2 2666666 45799999999999954
No 140
>PHA01630 putative group 1 glycosyl transferase
Probab=96.18 E-value=0.13 Score=48.79 Aligned_cols=104 Identities=13% Similarity=0.017 Sum_probs=61.1
Q ss_pred cccchh---hhhcCCCccccee---ccC-CchhhhhhhcCcceeecccccchhhhHHHHHHh------------------
Q 012314 333 SWAPQL---RVLNHPSIACFLS---HCG-WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDF------------------ 387 (466)
Q Consensus 333 ~~~p~~---~ll~~~~~~~~i~---hgG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~------------------ 387 (466)
.++|+. .++..+++ +|. ..| ..++.||+++|+|+|+.-..+ ....+.+.
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg----~~E~i~~~~ng~lv~~~~~~~~~~~~ 269 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGA----WSEWVLSNLDVYWIKSGRKPKLWYTN 269 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCC----chhhccCCCceEEeeecccccccccC
Confidence 336644 46767776 653 333 457899999999999986432 12222220
Q ss_pred -hhceeEeecCCCCCcCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 012314 388 -WKVGLKFDRDEGGIITREEIKNKVDQVLGN---QDFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 452 (466)
Q Consensus 388 -~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~---~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~ 452 (466)
.++|..+. .+.+++.+++.+++.| ++++++...-++...+ .-+-....+++.+.+
T Consensus 270 ~~~~G~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l~ 328 (331)
T PHA01630 270 PIHVGYFLD------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKIL 328 (331)
T ss_pred CcccccccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 03455543 2678888889898876 4566555544444433 345455555555544
No 141
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.14 E-value=0.053 Score=40.48 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=53.5
Q ss_pred ccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhh-ceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 012314 352 HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWK-VGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEK 430 (466)
Q Consensus 352 hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G-~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~ 430 (466)
+|-..-+.|++++|+|+|+-.. ......+.+ | -++.. + +.+++.++|.++++|++.+++..+-+..
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~-----~--~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY-----N--DPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE-----C--CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4455688999999999998754 444444432 5 33333 3 8999999999999998766644433333
Q ss_pred HHHHHhcCCCcHHHHHHHH
Q 012314 431 AMSSVREGGSSYKTFQNFL 449 (466)
Q Consensus 431 ~~~~~~~~g~~~~~~~~~v 449 (466)
... +.-+....+++++
T Consensus 76 ~v~---~~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVL---KRHTWEHRAEQIL 91 (92)
T ss_pred HHH---HhCCHHHHHHHHH
Confidence 322 2556566666554
No 142
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.97 E-value=0.015 Score=48.29 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHH
Q 012314 18 IPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELI 97 (466)
Q Consensus 18 ~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 97 (466)
.-+..|+++|.++||+|++++.......-.. ...++.+..++-..... .. ...... ..+++++
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~-~~~~~~--------~~~~~~l 67 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEE-------EEDGVRVHRLPLPRRPW-PL-RLLRFL--------RRLRRLL 67 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SE-------EETTEEEEEE--S-SSS-GG-GHCCHH--------HHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCccccc-------ccCCceEEeccCCccch-hh-hhHHHH--------HHHHHHH
Confidence 3468899999999999999998655442211 12467777766221111 00 000011 2233444
Q ss_pred HHHhcCCCCCccEEEeCCCch-hHHHHHH-HcCCceEEecc
Q 012314 98 EEINSREDEKIDCFIADGNIG-WSMEIAK-KMNVRGAVFWP 136 (466)
Q Consensus 98 ~~l~~~~~~~~DlvV~D~~~~-~~~~~A~-~lgiP~v~~~~ 136 (466)
..+. .+||+|.+..... ....+++ ..++|+|....
T Consensus 68 -~~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 68 -AARR---ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp -HHCT------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred -hhhc---cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 1122 7899999887332 3334444 78999998764
No 143
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.90 E-value=1.4 Score=40.39 Aligned_cols=104 Identities=21% Similarity=0.155 Sum_probs=68.5
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHH-HHHHHHHHh
Q 012314 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN--HKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLG-KLIEKCLQV 88 (466)
Q Consensus 12 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 88 (466)
+-.-|+.-+-.+..+|.++||+|.+.+-... .+.+... ++.+..+..- ....+. .+.... .+
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y---------gf~~~~Igk~-----g~~tl~~Kl~~~~-eR 72 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY---------GFPYKSIGKH-----GGVTLKEKLLESA-ER 72 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh---------CCCeEeeccc-----CCccHHHHHHHHH-HH
Confidence 3446788889999999999999999887532 2233333 6777666531 111122 222222 11
Q ss_pred ccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccch
Q 012314 89 MPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSS 138 (466)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~ 138 (466)
...+.+++.. .+||+.+. -+++.+..+|-.+|+|.+.+.-..
T Consensus 73 -~~~L~ki~~~------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 73 -VYKLSKIIAE------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred -HHHHHHHHhh------cCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 2234555555 89999999 568889999999999999976443
No 144
>PRK14098 glycogen synthase; Provisional
Probab=95.80 E-value=0.083 Score=53.08 Aligned_cols=164 Identities=17% Similarity=0.072 Sum_probs=87.3
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHH---hCCCCEEEEEcCCCCCCCCCCCchhHH---HHhcCCceeecccchh---hh
Q 012314 270 SVVYVSFGSFTILDQVQFQELALGLE---LCKRPFLWVVRPDITTDANDRYPEGFQ---ERVAARGQMISWAPQL---RV 340 (466)
Q Consensus 270 ~~v~vs~Gs~~~~~~~~~~~~~~a~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~n~~~~~~~p~~---~l 340 (466)
.+++...|... +...+..+++|+. +.+.+++++-.++ ....+.+. ++.+.++.+..+++.. .+
T Consensus 307 ~~~i~~vgRl~--~~KG~d~li~a~~~l~~~~~~lvivG~G~------~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~ 378 (489)
T PRK14098 307 TPLVGVIINFD--DFQGAELLAESLEKLVELDIQLVICGSGD------KEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLA 378 (489)
T ss_pred CCEEEEecccc--ccCcHHHHHHHHHHHHhcCcEEEEEeCCC------HHHHHHHHHHHHHCCCCEEEEEecCHHHHHHH
Confidence 35666667653 2223344444443 3355555444322 11112222 2345678787777764 57
Q ss_pred hcCCCcccceecc---CC-chhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHh-
Q 012314 341 LNHPSIACFLSHC---GW-NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL- 415 (466)
Q Consensus 341 l~~~~~~~~i~hg---G~-~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll- 415 (466)
++.+++ ++.-. |. .+.+||+++|+|.|+....+-.........+. +.|..++ .-++++|+++|.+++
T Consensus 379 ~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~-----~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 379 IAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFH-----DYTPEALVAKLGEALA 450 (489)
T ss_pred HHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeC-----CCCHHHHHHHHHHHHH
Confidence 877776 66432 32 36789999999988876543111110111122 6788884 357899999999876
Q ss_pred --cCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012314 416 --GNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 455 (466)
Q Consensus 416 --~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~ 455 (466)
.|++..+ ++.+ +++...-+-....++.++.+.+.
T Consensus 451 ~~~~~~~~~---~~~~---~~~~~~fsw~~~a~~y~~lY~~~ 486 (489)
T PRK14098 451 LYHDEERWE---ELVL---EAMERDFSWKNSAEEYAQLYREL 486 (489)
T ss_pred HHcCHHHHH---HHHH---HHhcCCCChHHHHHHHHHHHHHH
Confidence 3443222 2222 22223444456666666555443
No 145
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=95.71 E-value=0.41 Score=47.00 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=48.3
Q ss_pred hhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHHHHH
Q 012314 357 STMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALE 426 (466)
Q Consensus 357 s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~a~~ 426 (466)
++.||+++|+|++++ ++..-+..++. .--|...++ ..-....+++++.++..|++++.++.+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp---~~e~~~~~a~~~~kl~~~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDP---GQEAVAELADALLKLRRDPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCC---chHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 679999999999998 67777777776 467777764 333334799999999999998776644
No 146
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.14 E-value=0.53 Score=38.08 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=43.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
|++.+|++.+.++-+|-.-..-++..|..+|++|+++...-..+.+...
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 8999999999999999999999999999999999999987655554443
No 147
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.08 E-value=0.17 Score=42.40 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=56.7
Q ss_pred hCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCc
Q 012314 29 KHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKI 108 (466)
Q Consensus 29 ~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 108 (466)
++||+|++++........ ++++.+.+...-...........-++.-...... +.+.+..|++.+ ..|
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~a-v~~a~~~L~~~G-f~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQA-VARAARQLRAQG-FVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHH-HHHHHHHHHHcC-CCC
Confidence 589999999965443322 2677777653222222222222223333333333 334444555555 999
Q ss_pred cEEEeCCCchhHHHHHHHc-CCceEEec
Q 012314 109 DCFIADGNIGWSMEIAKKM-NVRGAVFW 135 (466)
Q Consensus 109 DlvV~D~~~~~~~~~A~~l-giP~v~~~ 135 (466)
|+||+-.-.-.++-+-+.+ ++|.+.+.
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 9999997655778888888 89999875
No 148
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.06 E-value=0.49 Score=47.15 Aligned_cols=152 Identities=17% Similarity=0.230 Sum_probs=88.5
Q ss_pred CCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHH---Hh---cCCceeecccchh--
Q 012314 267 QPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQE---RV---AARGQMISWAPQL-- 338 (466)
Q Consensus 267 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~---~~n~~~~~~~p~~-- 338 (466)
+++.+||.+|--.-..+++.++..+..+...+..++|.....-..+ ..|.. +. ++.+.+.+-+...
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge------~rf~ty~~~~Gl~p~riifs~va~k~eH 829 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE------QRFRTYAEQLGLEPDRIIFSPVAAKEEH 829 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch------HHHHHHHHHhCCCccceeeccccchHHH
Confidence 3455899888776667889999999999999999999986441100 22221 11 3444444333322
Q ss_pred ---hhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHh
Q 012314 339 ---RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVL 415 (466)
Q Consensus 339 ---~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll 415 (466)
..|..-.++-+.++ |..|.++.|++|+|||.+|.-.--...|.-+--++|+|..+-. +.++-.+.-.++=
T Consensus 830 vrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak------~~eEY~~iaV~La 902 (966)
T KOG4626|consen 830 VRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK------NREEYVQIAVRLA 902 (966)
T ss_pred HHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh------hHHHHHHHHHHhh
Confidence 23322222334554 6789999999999999999754333333322223788886642 3333333333444
Q ss_pred cCHHHHHHHHHHHHHHHHH
Q 012314 416 GNQDFKARALELKEKAMSS 434 (466)
Q Consensus 416 ~~~~~r~~a~~~~~~~~~~ 434 (466)
.|.++-+ +++.+++++
T Consensus 903 td~~~L~---~lr~~l~~~ 918 (966)
T KOG4626|consen 903 TDKEYLK---KLRAKLRKA 918 (966)
T ss_pred cCHHHHH---HHHHHHHHH
Confidence 4554444 344455543
No 149
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=94.40 E-value=1.2 Score=43.90 Aligned_cols=136 Identities=10% Similarity=0.115 Sum_probs=83.7
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCCCCCchhHH--HHhcCCceee-cccc-h-hhhhc
Q 012314 269 SSVVYVSFGSFTILDQVQFQELALGLELCK-RPFLWVVRPDITTDANDRYPEGFQ--ERVAARGQMI-SWAP-Q-LRVLN 342 (466)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~n~~~~-~~~p-~-~~ll~ 342 (466)
+.++++| +...+..+......++ ..+=+..+..+ .+.+. ++. +|+.+. ++.+ . .+++.
T Consensus 283 ~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~--------s~kL~~L~~y-~nvvly~~~~~~~l~~ly~ 346 (438)
T TIGR02919 283 KQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEM--------SSKLMSLDKY-DNVKLYPNITTQKIQELYQ 346 (438)
T ss_pred ccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcc--------cHHHHHHHhc-CCcEEECCcChHHHHHHHH
Confidence 4477775 3556666666665555 34433333221 12221 233 777766 7777 3 46999
Q ss_pred CCCcccceeccC--CchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHH
Q 012314 343 HPSIACFLSHCG--WNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDF 420 (466)
Q Consensus 343 ~~~~~~~i~hgG--~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~ 420 (466)
.|++=+-|+||. ..++.||+.+|+|+++.=. ..--..+.. . |-... .-+.+++.++|.++|.+++-
T Consensus 347 ~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~----t~~~~~~i~--~-g~l~~-----~~~~~~m~~~i~~lL~d~~~ 414 (438)
T TIGR02919 347 TCDIYLDINHGNEILNAVRRAFEYNLLILGFEE----TAHNRDFIA--S-ENIFE-----HNEVDQLISKLKDLLNDPNQ 414 (438)
T ss_pred hccEEEEccccccHHHHHHHHHHcCCcEEEEec----ccCCccccc--C-Cceec-----CCCHHHHHHHHHHHhcCHHH
Confidence 999977888876 4799999999999998833 221111111 1 44553 34689999999999999854
Q ss_pred HHHHHHHHHHHH
Q 012314 421 KARALELKEKAM 432 (466)
Q Consensus 421 r~~a~~~~~~~~ 432 (466)
.+.+...+++..
T Consensus 415 ~~~~~~~q~~~a 426 (438)
T TIGR02919 415 FRELLEQQREHA 426 (438)
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 150
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.36 E-value=0.33 Score=40.90 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=58.6
Q ss_pred EcCCCccCHHHHHHHHHHH-HhC-CCEEEEEeCCcchHH--HHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHH
Q 012314 9 MPAPAQGHVIPLLEFSQCL-AKH-GFRVTFVNTDYNHKR--VVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (466)
Q Consensus 9 ~~~~~~GH~~p~l~la~~L-~~r-Gh~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
+..+++||..=|+.|.+.+ .++ .++..+++....... +.+.... .....++..+|....-. ... ...
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~---~~~~~~~~~~~r~r~v~---q~~---~~~ 73 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKS---SSKRHKILEIPRAREVG---QSY---LTS 73 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHh---ccccceeeccceEEEec---hhh---Hhh
Confidence 4458889999999999999 333 466666666543332 2211110 00111344444211111 000 111
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch--hHHHHHHHc------CCceEEec
Q 012314 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKM------NVRGAVFW 135 (466)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~l------giP~v~~~ 135 (466)
..+.... +-..+..+.+ .+||+||+..-.. ..+.+|..+ |.+.|.+-
T Consensus 74 ~~~~l~~-~~~~~~il~r---~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIE 128 (170)
T PF08660_consen 74 IFTTLRA-FLQSLRILRR---ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIE 128 (170)
T ss_pred HHHHHHH-HHHHHHHHHH---hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEE
Confidence 1111111 1111222222 6899999998555 566678888 88888753
No 151
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=5.1 Score=37.37 Aligned_cols=347 Identities=11% Similarity=0.104 Sum_probs=172.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch--HHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCc-cH
Q 012314 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH--KRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRN-DL 78 (466)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 78 (466)
++.|++++..+.-||--+|.-=|..|++.|.+|.++...... +.+-.. ++++++.++..- ...... -.
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~h--------prI~ih~m~~l~-~~~~~p~~~ 81 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNH--------PRIRIHGMPNLP-FLQGGPRVL 81 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcC--------CceEEEeCCCCc-ccCCCchhh
Confidence 356889999999999999999999999999999999875432 222222 689999987422 111111 11
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCC-chhHHH----HHHHcCCceEEeccchhHHHHHHhhcccccc
Q 012314 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGN-IGWSME----IAKKMNVRGAVFWPSSAASVALVFRIPKLID 153 (466)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~-~~~~~~----~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 153 (466)
...++.+... ...+..++.. .++|.++.-.= ...... ...-.|...++=|+...+.........
T Consensus 82 ~l~lKvf~Qf-l~Ll~aL~~~------~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g---- 150 (444)
T KOG2941|consen 82 FLPLKVFWQF-LSLLWALFVL------RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLG---- 150 (444)
T ss_pred hhHHHHHHHH-HHHHHHHHhc------cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcC----
Confidence 1222333222 2223344443 67899887651 112222 234446777777766655311111100
Q ss_pred cCccCCCCCCCccccccccCCCCCCCcccccccccCCCCchhHH-HHHHHHH-Hhhhc-cccEEEEcChhhccHHHHhh-
Q 012314 154 DGIIDSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIF-FDLLERN-TRAMI-AVNFHFCNSTYELESEAFTT- 229 (466)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~vl~~s~~~le~~~~~~- 229 (466)
...++..+ ......++......+.. .+-+.+. .+... ....+++.-.|+-+.+ ..-
T Consensus 151 -----------~~h~lV~l--------~~~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps~~~~-l~~~ 210 (444)
T KOG2941|consen 151 -----------FQHPLVRL--------VRWLEKYFGKLADYNLCVTKAMREDLIQNWGINRAKVLYDRPPSKPTP-LDEQ 210 (444)
T ss_pred -----------CCCchHHH--------HHHHHHHhhcccccchhhHHHHHHHHHHhcCCceeEEEecCCCCCCCc-hhHH
Confidence 00000000 00000111111111110 0111111 11111 1334555555541100 000
Q ss_pred cCCcceeccc----cCCCCCCCCCCCcccCCccchhhhc--------cCCCCeEEEEEeccccccCHHHHHHHHHHHHhC
Q 012314 230 FPELLPIGPL----LASNRLGNTAGYFWCEDSNCLKWLD--------QQQPSSVVYVSFGSFTILDQVQFQELALGLELC 297 (466)
Q Consensus 230 ~p~v~~VGpl----~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~ 297 (466)
-.-+..+|.- ..+..+. ...+. ..|+. ..++++.++||-- +..+++.+..+++|+..-
T Consensus 211 H~lf~~l~~d~~~f~ar~~q~------~~~~~--taf~~k~~s~~v~~~~~~pallvsST--swTpDEdf~ILL~AL~~y 280 (444)
T KOG2941|consen 211 HELFMKLAGDHSPFRAREPQD------KALER--TAFTKKDASGDVQLLPERPALLVSST--SWTPDEDFGILLEALVIY 280 (444)
T ss_pred HHHHhhhccccchhhhccccc------chhhh--hhHhhhcccchhhhccCCCeEEEecC--CCCCcccHHHHHHHHHhh
Confidence 0001123322 2221111 00110 01111 1245678888643 455777788888887521
Q ss_pred ---------CC-CEEEEEcCCCCCCCCCCCchhHHHHhc----CCceee-cccc---hhhhhcCCCcccceeccCCc---
Q 012314 298 ---------KR-PFLWVVRPDITTDANDRYPEGFQERVA----ARGQMI-SWAP---QLRVLNHPSIACFLSHCGWN--- 356 (466)
Q Consensus 298 ---------~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~----~n~~~~-~~~p---~~~ll~~~~~~~~i~hgG~~--- 356 (466)
+. .++.++.+. .++.+.+..... .++.+. .|+. +..+|+.++++..+|-...|
T Consensus 281 ~~~~~~~~~~lP~llciITGK------GPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDL 354 (444)
T KOG2941|consen 281 EEQLYDKTHNLPSLLCIITGK------GPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDL 354 (444)
T ss_pred hhhhhhccCCCCcEEEEEcCC------CchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCc
Confidence 22 344444433 245555444332 455554 7764 56799888887777654443
Q ss_pred --hhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhc
Q 012314 357 --STMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLG 416 (466)
Q Consensus 357 --s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~ 416 (466)
-|..-.=+|+|++++- =.-.-+-|.+. --|.... +.++|++.+..++.
T Consensus 355 PMKVVDMFGcglPvcA~~----fkcl~ELVkh~-eNGlvF~-------Ds~eLa~ql~~lf~ 404 (444)
T KOG2941|consen 355 PMKVVDMFGCGLPVCAVN----FKCLDELVKHG-ENGLVFE-------DSEELAEQLQMLFK 404 (444)
T ss_pred chhHHHhhcCCCceeeec----chhHHHHHhcC-CCceEec-------cHHHHHHHHHHHHh
Confidence 2445566889998873 33444555553 5677774 68999999999987
No 152
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=93.84 E-value=4.6 Score=36.07 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=47.4
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCC-----cee-----ecccchhhhhcCCCcccceeccC-C
Q 012314 287 FQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAAR-----GQM-----ISWAPQLRVLNHPSIACFLSHCG-W 355 (466)
Q Consensus 287 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n-----~~~-----~~~~p~~~ll~~~~~~~~i~hgG-~ 355 (466)
...+...+++.|..++++.+.. .|+.....+..| +.+ .++=|+-++|+-++. +|.-.. .
T Consensus 186 ~~~l~k~l~~~g~~~lisfSRR--------Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSi 255 (329)
T COG3660 186 ASLLVKILENQGGSFLISFSRR--------TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSI 255 (329)
T ss_pred HHHHHHHHHhCCceEEEEeecC--------CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchh
Confidence 4445666788899998888655 233322222221 112 145588899955554 776655 4
Q ss_pred chhhhhhhcCcceeec
Q 012314 356 NSTMEGVSNGIPFLCW 371 (466)
Q Consensus 356 ~s~~eal~~GvP~l~~ 371 (466)
|-.+||++.|+|+.+.
T Consensus 256 nM~sEAasTgkPv~~~ 271 (329)
T COG3660 256 NMCSEAASTGKPVFIL 271 (329)
T ss_pred hhhHHHhccCCCeEEE
Confidence 6779999999999554
No 153
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=93.70 E-value=0.15 Score=44.07 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=30.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (466)
||||+.-=-|. +---+.+|+++|.+.||+|+++.+...+....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g 43 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTG 43 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTST
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcc
Confidence 45665553344 33448899999988889999999988776553
No 154
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=93.58 E-value=0.67 Score=46.78 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=60.4
Q ss_pred CCceeecccc--h-hhhhcCCCcccceecc---CCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCC
Q 012314 327 ARGQMISWAP--Q-LRVLNHPSIACFLSHC---GWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 400 (466)
Q Consensus 327 ~n~~~~~~~p--~-~~ll~~~~~~~~i~hg---G~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 400 (466)
..+.+.++.+ + ...+..+++ +|.=+ |.++..||+.+|+|+| .......|++ -.=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEeC-----
Confidence 3556667777 3 357766666 77644 6679999999999999 3334445555 36677773
Q ss_pred CcCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 012314 401 IITREEIKNKVDQVLGNQDFKARALELKEK 430 (466)
Q Consensus 401 ~~~~~~l~~~i~~ll~~~~~r~~a~~~~~~ 430 (466)
+.++|.++|..+|.+.+-.+++..-+-+
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~ 501 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIK 501 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 6899999999999998655544443333
No 155
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.41 E-value=1 Score=37.65 Aligned_cols=102 Identities=19% Similarity=0.186 Sum_probs=51.9
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHH
Q 012314 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGK 92 (466)
Q Consensus 13 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (466)
.+|=-.-+..++++|+++||+|++++......... . ....... ....... .. ...+. ....
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~-----------~-~~~~~~~-~~~~~~~-~~---~~~~~--~~~~ 71 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE-----------E-LVKIFVK-IPYPIRK-RF---LRSFF--FMRR 71 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS-----------T-EEEE----TT-SSTS-S-----HHHH--HHHH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh-----------h-ccceeee-eeccccc-cc---chhHH--HHHH
Confidence 44666779999999999999999998864433221 1 1111110 0000001 11 11111 1234
Q ss_pred HHHHHHHHhcCCCCCccEEEeCCCch-hHHHHHHHcCCceEEeccchhH
Q 012314 93 LEELIEEINSREDEKIDCFIADGNIG-WSMEIAKKMNVRGAVFWPSSAA 140 (466)
Q Consensus 93 ~~~ll~~l~~~~~~~~DlvV~D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 140 (466)
+.+++++ .++|+|-+-.... +...++.. ++|.+.+.+....
T Consensus 72 ~~~~i~~------~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~~ 113 (177)
T PF13439_consen 72 LRRLIKK------EKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPYF 113 (177)
T ss_dssp HHHHHHH------HT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH-
T ss_pred HHHHHHH------cCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCcc
Confidence 5666666 6799995554333 33333333 9999998766653
No 156
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=92.64 E-value=2.5 Score=39.48 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=64.2
Q ss_pred CCcee-ecccch---hhhhcCCCccccee--ccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCC
Q 012314 327 ARGQM-ISWAPQ---LRVLNHPSIACFLS--HCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 400 (466)
Q Consensus 327 ~n~~~-~~~~p~---~~ll~~~~~~~~i~--hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 400 (466)
+|+.+ .+++|. ..+|+.+++..|.+ .=|.|+++-.|+.|+|++.- .+...-.-+++ .|+=+... .+
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~-~~ipVlf~---~d 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKE-QGIPVLFY---GD 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHh-CCCeEEec---cc
Confidence 46664 478874 56999999977777 46899999999999999876 56556666777 48877775 38
Q ss_pred CcCHHHHHHHHHHHhc
Q 012314 401 IITREEIKNKVDQVLG 416 (466)
Q Consensus 401 ~~~~~~l~~~i~~ll~ 416 (466)
.++...|+++=+++..
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 8999999999888764
No 157
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.23 E-value=0.48 Score=42.92 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=56.3
Q ss_pred cccchhhhhcCCCcccceeccCCchhh-hhhhcCcceeecccccchhh--hHHHHHHhhhceeEeecCCCCCcCHHHHHH
Q 012314 333 SWAPQLRVLNHPSIACFLSHCGWNSTM-EGVSNGIPFLCWPYFGDQFL--NERYICDFWKVGLKFDRDEGGIITREEIKN 409 (466)
Q Consensus 333 ~~~p~~~ll~~~~~~~~i~hgG~~s~~-eal~~GvP~l~~P~~~DQ~~--~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~ 409 (466)
.|-...++|.++++ .|--. ||.. +++=.|||+|.+|-.+-|+. .|+|=.+-+|..+.+-. -.+..-..
T Consensus 301 sqqsfadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~~aq~a~~ 371 (412)
T COG4370 301 SQQSFADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----PEAQAAAQ 371 (412)
T ss_pred eHHHHHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----CchhhHHH
Confidence 55555566666555 44333 3443 45778999999999998876 66666666788877742 23334444
Q ss_pred HHHHHhcCHHHHHHHHH
Q 012314 410 KVDQVLGNQDFKARALE 426 (466)
Q Consensus 410 ~i~~ll~~~~~r~~a~~ 426 (466)
..+++|.|+.+.+++++
T Consensus 372 ~~q~ll~dp~r~~air~ 388 (412)
T COG4370 372 AVQELLGDPQRLTAIRH 388 (412)
T ss_pred HHHHHhcChHHHHHHHh
Confidence 45559999988887763
No 158
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=92.16 E-value=1.7 Score=39.20 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCC--CCCCCCCCccHHH
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD--GMEPWEDRNDLGK 80 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 80 (466)
+||||+.- --.=|.--+.+|+++|.+.| +|+++.+...+....... .....+++..+.. +.. .........
T Consensus 5 ~M~ILltN-DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai----t~~~pl~~~~~~~~~~~~-~y~v~GTPa 77 (257)
T PRK13932 5 KPHILVCN-DDGIEGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAM----TLGVPLRIKEYQKNNRFF-GYTVSGTPV 77 (257)
T ss_pred CCEEEEEC-CCCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccc----cCCCCeEEEEEccCCCce-EEEEcCcHH
Confidence 46766543 32223344888999998888 799999987666554332 1123455544331 100 000000111
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCC-------------chhHHHHHHHcCCceEEecc
Q 012314 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGN-------------IGWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~-------------~~~~~~~A~~lgiP~v~~~~ 136 (466)
-+ +.--+..+-. .+||+||.-.. +..|..-|..+|||.|.++.
T Consensus 78 DC----------V~lal~~~~~---~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 78 DC----------IKVALSHILP---EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HH----------HHHHHHhhcC---CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 11 1111122211 57999996532 22455667788999999873
No 159
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=91.97 E-value=3 Score=38.40 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=57.8
Q ss_pred CCceee-cccc---hhhhhcCCCcccceec--cCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCC
Q 012314 327 ARGQMI-SWAP---QLRVLNHPSIACFLSH--CGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 400 (466)
Q Consensus 327 ~n~~~~-~~~p---~~~ll~~~~~~~~i~h--gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 400 (466)
+++.+. +++| +..+|+.+++..|+++ =|.|+++-.++.|||++.-- +-+.+.. +.+ .|+-+..+. +
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e-~gv~Vlf~~---d 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTE-QGLPVLFTG---D 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHh-CCCeEEecC---C
Confidence 577654 7777 5579999999888884 58999999999999998762 2223333 455 488887663 7
Q ss_pred CcCHHHHHHHHHHH
Q 012314 401 IITREEIKNKVDQV 414 (466)
Q Consensus 401 ~~~~~~l~~~i~~l 414 (466)
.++...+.++=+++
T Consensus 278 ~L~~~~v~e~~rql 291 (322)
T PRK02797 278 DLDEDIVREAQRQL 291 (322)
T ss_pred cccHHHHHHHHHHH
Confidence 78888777764443
No 160
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.90 E-value=0.47 Score=44.36 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=33.2
Q ss_pred CEEEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012314 4 PRVLVMPA-PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKR 45 (466)
Q Consensus 4 ~~il~~~~-~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (466)
+|++|+.. ||-|=..-..++|-.++++|++|.++++++....
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSL 43 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccH
Confidence 35666664 4559999999999999999999999999987653
No 161
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.86 E-value=2.1 Score=33.56 Aligned_cols=106 Identities=18% Similarity=0.285 Sum_probs=64.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
||++.+.++-.|.....-++..|.++|++|.........+.+.+.... .+..++.++.....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~-----~~pdvV~iS~~~~~------------- 62 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE-----EDADAIGLSGLLTT------------- 62 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEeccccc-------------
Confidence 588999999999999999999999999999888776444444333211 23344443321111
Q ss_pred HHHhccHHHHHHHHHHhcCCCC-CccEEEeCCCchhHHHHHHHcCCceEE
Q 012314 85 CLQVMPGKLEELIEEINSREDE-KIDCFIADGNIGWSMEIAKKMNVRGAV 133 (466)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~-~~DlvV~D~~~~~~~~~A~~lgiP~v~ 133 (466)
....+.++++.+++.. . .+-+++.-.........++..|+=.+.
T Consensus 63 ----~~~~~~~~i~~l~~~~-~~~~~i~vGG~~~~~~~~~~~~~G~D~~~ 107 (119)
T cd02067 63 ----HMTLMKEVIEELKEAG-LDDIPVLVGGAIVTRDFKFLKEIGVDAYF 107 (119)
T ss_pred ----cHHHHHHHHHHHHHcC-CCCCeEEEECCCCChhHHHHHHcCCeEEE
Confidence 1233455555555532 2 344566665433334577878875444
No 162
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.79 E-value=3.9 Score=35.04 Aligned_cols=104 Identities=14% Similarity=0.083 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch---HHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCcc
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH---KRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRND 77 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (466)
|.+-.|.+++..+.|=....+.+|-+.+.+|++|.++-.-... ...... ...+++.+.....++.-.. .+
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l-----~~l~~v~~~~~g~~~~~~~--~~ 92 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLL-----EFGGGVEFHVMGTGFTWET--QD 92 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHH-----hcCCCcEEEECCCCCcccC--CC
Confidence 3456899999999999999999999999999999988653221 111110 1124788887765432211 11
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch
Q 012314 78 LGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (466)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~ 118 (466)
..... ......+....+.+.+ .++|+||.|....
T Consensus 93 ~~e~~----~~~~~~~~~a~~~l~~---~~ydlvVLDEi~~ 126 (191)
T PRK05986 93 RERDI----AAAREGWEEAKRMLAD---ESYDLVVLDELTY 126 (191)
T ss_pred cHHHH----HHHHHHHHHHHHHHhC---CCCCEEEEehhhH
Confidence 12212 2223334444444444 7899999998544
No 163
>PLN02939 transferase, transferring glycosyl groups
Probab=91.38 E-value=4.3 Score=43.60 Aligned_cols=115 Identities=10% Similarity=0.117 Sum_probs=67.3
Q ss_pred CCceeecccchh---hhhcCCCcccceec---cC-CchhhhhhhcCcceeeccccc--chhhh--HHHH-HHhhhceeEe
Q 012314 327 ARGQMISWAPQL---RVLNHPSIACFLSH---CG-WNSTMEGVSNGIPFLCWPYFG--DQFLN--ERYI-CDFWKVGLKF 394 (466)
Q Consensus 327 ~n~~~~~~~p~~---~ll~~~~~~~~i~h---gG-~~s~~eal~~GvP~l~~P~~~--DQ~~~--a~rv-~~~~G~G~~l 394 (466)
+++.+..+.+.. .++..+++ ||.- =| ..+.+||+++|+|.|+....+ |.-.. ...+ .+ -+-|..+
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~e-g~NGfLf 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVE-LRNGFTF 913 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccC-CCceEEe
Confidence 567777777754 47866666 7753 23 347899999999999876543 21111 0111 12 1567777
Q ss_pred ecCCCCCcCHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012314 395 DRDEGGIITREEIKNKVDQVLG----NQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 455 (466)
Q Consensus 395 ~~~~~~~~~~~~l~~~i~~ll~----~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~ 455 (466)
.+ -+++.|.++|.+++. |++.+++..+ . ++...-+-...+.+..+.+...
T Consensus 914 ~~-----~D~eaLa~AL~rAL~~~~~dpe~~~~L~~---~---am~~dFSWe~~A~qYeeLY~~l 967 (977)
T PLN02939 914 LT-----PDEQGLNSALERAFNYYKRKPEVWKQLVQ---K---DMNIDFSWDSSASQYEELYQRA 967 (977)
T ss_pred cC-----CCHHHHHHHHHHHHHHhccCHHHHHHHHH---H---HHHhcCCHHHHHHHHHHHHHHH
Confidence 43 478899999988874 5555544432 1 1122344455555555544443
No 164
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=91.29 E-value=2.5 Score=37.98 Aligned_cols=101 Identities=19% Similarity=0.019 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCC--CCCCCCCCccHHHHHHHHHHhccHHHH
Q 012314 17 VIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD--GMEPWEDRNDLGKLIEKCLQVMPGKLE 94 (466)
Q Consensus 17 ~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (466)
.--+.+|+++|.+.| +|+++.+...+....+.. .....+++..++. +. ..........- .+.
T Consensus 13 a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai----t~~~pl~~~~~~~~~~~-~~~~v~GTPaD----------cv~ 76 (244)
T TIGR00087 13 SPGIRALYQALKELG-EVTVVAPARQRSGTGHSL----TLFEPLRVGQVKVKNGA-HIYAVDGTPTD----------CVI 76 (244)
T ss_pred CHhHHHHHHHHHhCC-CEEEEeCCCCccccccCc----CCCCCeEEEEeccCCCc-cEEEEcCcHHH----------HHH
Confidence 334788999999988 899999987777664432 1223455544431 11 00000000000 111
Q ss_pred HHHHHHhcCCCCCccEEEeCCC-------------chhHHHHHHHcCCceEEecc
Q 012314 95 ELIEEINSREDEKIDCFIADGN-------------IGWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 95 ~ll~~l~~~~~~~~DlvV~D~~-------------~~~~~~~A~~lgiP~v~~~~ 136 (466)
--+..+-. .+||+||.-.. +..|..-|..+|||.+.++.
T Consensus 77 ~gl~~l~~---~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 77 LGINELMP---EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred HHHHHhcc---CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 11112211 57999996542 22455667788999999874
No 165
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.68 E-value=11 Score=34.99 Aligned_cols=88 Identities=18% Similarity=0.300 Sum_probs=57.4
Q ss_pred CCceeecccch---hhhhcCCCcccceec---cCCch-hhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCC
Q 012314 327 ARGQMISWAPQ---LRVLNHPSIACFLSH---CGWNS-TMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEG 399 (466)
Q Consensus 327 ~n~~~~~~~p~---~~ll~~~~~~~~i~h---gG~~s-~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~ 399 (466)
.++.+.++++. ..++..+++ ++.- .|.|. +.||+++|+|+|+. +.......+.+ -+.|....
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~----~~~~~~e~~~~-~~~g~~~~---- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIAS----DVGGIPEVVED-GETGLLVP---- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEEC----CCCChHHHhcC-CCceEecC----
Confidence 56777788882 246665655 5554 35543 59999999999877 44444444443 13476332
Q ss_pred CCcCHHHHHHHHHHHhcCHHHHHHHHH
Q 012314 400 GIITREEIKNKVDQVLGNQDFKARALE 426 (466)
Q Consensus 400 ~~~~~~~l~~~i~~ll~~~~~r~~a~~ 426 (466)
..+.+.+.+++..++++.+.+++...
T Consensus 326 -~~~~~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 326 -PGDVEELADALEQLLEDPELREELGE 351 (381)
T ss_pred -CCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 22789999999999988755554443
No 166
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=89.66 E-value=11 Score=31.37 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=59.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEE---EeCC--cchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTF---VNTD--YNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (466)
--|.+++.+|.|=....+.+|-+.+.+|++|.| +-.. ..+..+.+. .+++.+.....+..-.. .+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~-------l~~v~~~~~g~~~~~~~--~~~ 73 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALER-------LPNIEIHRMGRGFFWTT--END 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHh-------CCCcEEEECCCCCccCC--CCh
Confidence 357888999999999999999999999999999 4442 111122221 14788877664432211 112
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch
Q 012314 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (466)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~ 118 (466)
...... ....++...+.+.. ..+|+||.|....
T Consensus 74 ~~~~~~----a~~~~~~a~~~~~~---~~~dLlVLDEi~~ 106 (159)
T cd00561 74 EEDIAA----AAEGWAFAKEAIAS---GEYDLVILDEINY 106 (159)
T ss_pred HHHHHH----HHHHHHHHHHHHhc---CCCCEEEEechHh
Confidence 222222 22333333333333 7899999998544
No 167
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=89.44 E-value=1.3 Score=41.41 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCc-cCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012314 3 RPRVLVMPAPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTDYNHKR 45 (466)
Q Consensus 3 ~~~il~~~~~~~-GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (466)
++||+|++.=|+ |=..-..++|-.|++.|.+|.++++++.+..
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 357888885544 9988889999999999999999988876553
No 168
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=88.98 E-value=1.6 Score=43.49 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=64.1
Q ss_pred cccchhh---hhcCCCccccee---ccCCc-hhhhhhhcCcc----eeecccccchhhhHHHHHHhhhceeEeecCCCCC
Q 012314 333 SWAPQLR---VLNHPSIACFLS---HCGWN-STMEGVSNGIP----FLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 401 (466)
Q Consensus 333 ~~~p~~~---ll~~~~~~~~i~---hgG~~-s~~eal~~GvP----~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~ 401 (466)
..+|+.+ ++..+++ ++. +-|.| ++.||+++|+| +|+.-..+ .+. . ++-|+.+++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~---~-l~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQ---E-LNGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChH---H-hCCcEEECC-----
Confidence 4555553 5766776 664 44654 66899999999 66654332 222 2 345777754
Q ss_pred cCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 012314 402 ITREEIKNKVDQVLGNQ--DFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 452 (466)
Q Consensus 402 ~~~~~l~~~i~~ll~~~--~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~ 452 (466)
.+.++++++|.++|+.+ +-+++.+++.+.+.. -+...-.+++++.+
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l 454 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDL 454 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHh
Confidence 57999999999999754 556666666666543 35555556665554
No 169
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=88.92 E-value=3.3 Score=37.05 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=57.3
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCC------CCCCCCCCccHHHHHHHHHHh
Q 012314 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPD------GMEPWEDRNDLGKLIEKCLQV 88 (466)
Q Consensus 15 GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 88 (466)
=|.--+.+|+++|. .+++|+++.+...+........ ....++...+.. +.|.+ +
T Consensus 11 i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slT----l~~Plr~~~~~~~~~av~GTPaD---------C------ 70 (252)
T COG0496 11 IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLT----LHEPLRVRQVDNGAYAVNGTPAD---------C------ 70 (252)
T ss_pred cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccc----cccCceeeEeccceEEecCChHH---------H------
Confidence 34455788899998 9999999999988776644321 112233322221 11111 1
Q ss_pred ccHHHHHHHHHHhcCCCCCccEEEeCCC----------c---hhHHHHHHHcCCceEEecc
Q 012314 89 MPGKLEELIEEINSREDEKIDCFIADGN----------I---GWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~DlvV~D~~----------~---~~~~~~A~~lgiP~v~~~~ 136 (466)
..-.+..++++ .+||+||.-.. + ..|+.=|..+|||.|.++.
T Consensus 71 V~lal~~l~~~------~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~ 125 (252)
T COG0496 71 VILGLNELLKE------PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISL 125 (252)
T ss_pred HHHHHHHhccC------CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeee
Confidence 11134445444 56999996432 2 2455566788999999874
No 170
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=88.07 E-value=3 Score=36.31 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=32.0
Q ss_pred CEEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 4 PRVLVMPAP--AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 4 ~~il~~~~~--~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
.++.+++.+ |-|-..-...|+..|+++|+.|.++-.+-
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 457777765 55899999999999999999999998863
No 171
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=88.01 E-value=2.4 Score=38.48 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=39.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
...++|+-.+|.|=..=..+||.+|.++|++|+|++.+.....+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 45688888888877777899999999999999999998777766554
No 172
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=87.08 E-value=4.9 Score=35.00 Aligned_cols=106 Identities=18% Similarity=0.277 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHH
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
+.|+++.+.++-.|-....-++.-|.+.|++|+.+...-..+.+.+.... .+..++.++-....
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~-----~~~d~v~lS~~~~~----------- 145 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-----HKPDILGLSALMTT----------- 145 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEeccccc-----------
Confidence 46899999999999999999999999999999988876444444333211 24455544422111
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCC--CccEEEeCCCchhHHHHHHHcCCceEE
Q 012314 83 EKCLQVMPGKLEELIEEINSREDE--KIDCFIADGNIGWSMEIAKKMNVRGAV 133 (466)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~--~~DlvV~D~~~~~~~~~A~~lgiP~v~ 133 (466)
....++++++.+++.. . ++.++|.-.. .....++.+|.=.+.
T Consensus 146 ------~~~~~~~~i~~lr~~~-~~~~~~i~vGG~~--~~~~~~~~~GaD~~~ 189 (201)
T cd02070 146 ------TMGGMKEVIEALKEAG-LRDKVKVMVGGAP--VNQEFADEIGADGYA 189 (201)
T ss_pred ------cHHHHHHHHHHHHHCC-CCcCCeEEEECCc--CCHHHHHHcCCcEEE
Confidence 2334566666666632 2 3455565542 234678887765444
No 173
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=86.55 E-value=9.8 Score=34.30 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 16 HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 16 H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
|.--+.+|+++|.+ +|+|+++.+...+......
T Consensus 12 ~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~a 44 (253)
T PRK13935 12 TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHA 44 (253)
T ss_pred CCHHHHHHHHHHHh-CCcEEEEccCCCCcccccc
Confidence 33447888999965 6899999998777665443
No 174
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=86.49 E-value=3.6 Score=37.26 Aligned_cols=92 Identities=15% Similarity=0.214 Sum_probs=54.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
+|+++ +|+|. -..|+++|.++||+|+..+............ ....... ..+
T Consensus 2 ~ILvl--GGT~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~-------g~~~v~~--g~l--------------- 52 (256)
T TIGR00715 2 TVLLM--GGTVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIH-------QALTVHT--GAL--------------- 52 (256)
T ss_pred eEEEE--echHH---HHHHHHHHHhCCCeEEEEEccCCcccccccc-------CCceEEE--CCC---------------
Confidence 45554 34442 6789999999999999888766543321110 0111111 000
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchh------HHHHHHHcCCceEEec
Q 012314 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGNIGW------SMEIAKKMNVRGAVFW 135 (466)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~------~~~~A~~lgiP~v~~~ 135 (466)
-...+.++++. .++|+||--.+.++ +..+|+.+|||++.+-
T Consensus 53 ----~~~~l~~~l~~------~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 53 ----DPQELREFLKR------HSIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred ----CHHHHHHHHHh------cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 01224555555 78998775544332 4568899999999964
No 175
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=86.09 E-value=3.3 Score=34.15 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=41.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecC
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP 66 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (466)
.+||++--.||.|-..-++.|++.|.++|+.|-=+-++...+.-.. .+|+.+++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR---------~GF~Ivdl~ 59 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR---------IGFKIVDLA 59 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE---------eeeEEEEcc
Confidence 3689999999999999999999999999999875555443322111 367777776
No 176
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=85.89 E-value=18 Score=29.70 Aligned_cols=139 Identities=14% Similarity=0.133 Sum_probs=73.1
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeecccchhhhhcCCCcccce
Q 012314 271 VVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFL 350 (466)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i 350 (466)
-|.|-.||.+ +...++++...|+..+..+-..+.+- -..|+.+. +++.. +.+-.+++||
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa------HR~p~~l~----------~~~~~---~~~~~~~viI 60 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA------HRTPERLL----------EFVKE---YEARGADVII 60 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T------TTSHHHHH----------HHHHH---TTTTTESEEE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec------cCCHHHHH----------HHHHH---hccCCCEEEE
Confidence 4566677643 67789999999999997765555433 13444432 22221 1111233488
Q ss_pred eccCCc----hhhhhhhcCcceeecccccchhhhHH----HHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHH
Q 012314 351 SHCGWN----STMEGVSNGIPFLCWPYFGDQFLNER----YICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKA 422 (466)
Q Consensus 351 ~hgG~~----s~~eal~~GvP~l~~P~~~DQ~~~a~----rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~ 422 (466)
.=.|.. ++..++. -+|+|.+|....+..-.. .++-=-|+++..--- .+..++..++-.|-.+ .|+++++
T Consensus 61 a~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A~~ILa~-~d~~l~~ 137 (150)
T PF00731_consen 61 AVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLAARILAL-KDPELRE 137 (150)
T ss_dssp EEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHHHHHHHT-T-HHHHH
T ss_pred EECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHHHHHHhc-CCHHHHH
Confidence 877654 4444444 799999998766443221 111101444433210 1234445555555433 5789999
Q ss_pred HHHHHHHHHHH
Q 012314 423 RALELKEKAMS 433 (466)
Q Consensus 423 ~a~~~~~~~~~ 433 (466)
+.+..+++.++
T Consensus 138 kl~~~~~~~~~ 148 (150)
T PF00731_consen 138 KLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99998888875
No 177
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=85.64 E-value=7.8 Score=38.57 Aligned_cols=110 Identities=15% Similarity=0.238 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccH
Q 012314 1 MSRPRVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH-KRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (466)
Q Consensus 1 m~~~~il~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (466)
|++.++++.... +.|=..-...|++.|+++|++|..+-+.+.. +....... .+..... ++.. .
T Consensus 1 ~~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~~~------~g~~~~~----ld~~--~--- 65 (451)
T PRK01077 1 MRMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHTAA------TGRPSRN----LDSW--M--- 65 (451)
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHHHH------hCCCccc----CCce--e---
Confidence 666667776544 4488899999999999999999988774321 10000000 0000000 0000 0
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCC------------chhHHHHHHHcCCceEEeccch
Q 012314 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGN------------IGWSMEIAKKMNVRGAVFWPSS 138 (466)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~------------~~~~~~~A~~lgiP~v~~~~~~ 138 (466)
.....+++.++++. .+.|++|++.. ......+|+.++.|++.+....
T Consensus 66 ---------~~~~~v~~~~~~~~----~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 66 ---------MGEELVRALFARAA----QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred ---------CCHHHHHHHHHHhc----ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 01234455555443 46899997443 1246789999999999987643
No 178
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=85.30 E-value=20 Score=30.22 Aligned_cols=98 Identities=10% Similarity=0.128 Sum_probs=58.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEE---eCCc--chHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFV---NTDY--NHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (466)
--|.+++..+.|-....+.+|-+.+.+|++|.++ -... .+....+. .++++.....++.-.. .+.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~--------~~~~~~~~g~g~~~~~--~~~ 75 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP--------HGVEFQVMGTGFTWET--QNR 75 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh--------cCcEEEECCCCCeecC--CCc
Confidence 3578888899999999999999999999999655 3331 11112111 1677777765443221 111
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch
Q 012314 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (466)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~ 118 (466)
...... ....+....+.+.+ .++|+||.|....
T Consensus 76 ~~~~~~----~~~~~~~a~~~l~~---~~~DlvVLDEi~~ 108 (173)
T TIGR00708 76 EADTAI----AKAAWQHAKEMLAD---PELDLVLLDELTY 108 (173)
T ss_pred HHHHHH----HHHHHHHHHHHHhc---CCCCEEEehhhHH
Confidence 111121 22233333333433 7899999998543
No 179
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=85.24 E-value=7.5 Score=33.71 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHH
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
+.+|++.|.++-.|-....-++.-|..+|++|+++...-..+.+.+.... .+.+++.++-....
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~-----~~pd~v~lS~~~~~----------- 147 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK-----EKPLMLTGSALMTT----------- 147 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----cCCCEEEEcccccc-----------
Confidence 46899999999999999999999999999999999988665555444311 24455544422111
Q ss_pred HHHHHhccHHHHHHHHHHhcCC-CCCccEEEeCCCchhHHHHHHHcCCce
Q 012314 83 EKCLQVMPGKLEELIEEINSRE-DEKIDCFIADGNIGWSMEIAKKMNVRG 131 (466)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~-~~~~DlvV~D~~~~~~~~~A~~lgiP~ 131 (466)
....++++++.+++.+ ..++-++|.-... ...+|+..|.=.
T Consensus 148 ------~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad~ 189 (197)
T TIGR02370 148 ------TMYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGADV 189 (197)
T ss_pred ------CHHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCcE
Confidence 2233566666666642 1235566666432 345677766543
No 180
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=85.10 E-value=6.2 Score=35.87 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=41.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCC
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEP 71 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (466)
|.++||+++.+++...-. .++++|.++|+++.++......+.. .....++.+.+|.+...
T Consensus 1 ~~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~--------~~l~~~DgLvipGGfs~ 60 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAER--------KSVSDYDCLVIPGGFSA 60 (261)
T ss_pred CCCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccc--------cchhhCCEEEECCCCCc
Confidence 778899999999886543 5578898999999988764321100 11246788888877543
No 181
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=84.29 E-value=15 Score=33.10 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
+.+|+++|.+ +|+|+++.+...+.....
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~Sg~g~ 43 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRSASSH 43 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCccccc
Confidence 8888999965 689999999877765433
No 182
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=83.63 E-value=8.6 Score=30.01 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=36.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
|+++.+.+...|-.-+..++..|.++||+|.++-.....+.+.+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~ 45 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVE 45 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHH
Confidence 78999999999999999999999999999999966654444433
No 183
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=83.62 E-value=3.1 Score=42.08 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=47.4
Q ss_pred hhhhhcCCCccccee---ccCCc-hhhhhhhcCcceeeccccc-chhhhHHHHHHhhhceeEeecCC--CCCcCHHHHHH
Q 012314 337 QLRVLNHPSIACFLS---HCGWN-STMEGVSNGIPFLCWPYFG-DQFLNERYICDFWKVGLKFDRDE--GGIITREEIKN 409 (466)
Q Consensus 337 ~~~ll~~~~~~~~i~---hgG~~-s~~eal~~GvP~l~~P~~~-DQ~~~a~rv~~~~G~G~~l~~~~--~~~~~~~~l~~ 409 (466)
+.+++..+++ +|. +-|+| +++||+++|+|+|+....+ ..... ..+......|+.+.+.. ...-+.++|++
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 4566766666 655 45554 7899999999999986532 11111 11111001577775311 11235678888
Q ss_pred HHHHHhcCHHHHH
Q 012314 410 KVDQVLGNQDFKA 422 (466)
Q Consensus 410 ~i~~ll~~~~~r~ 422 (466)
++.++++. +.|+
T Consensus 545 ~m~~~~~~-~~r~ 556 (590)
T cd03793 545 YMYEFCQL-SRRQ 556 (590)
T ss_pred HHHHHhCC-cHHH
Confidence 88888844 3343
No 184
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=83.61 E-value=13 Score=33.81 Aligned_cols=43 Identities=23% Similarity=0.246 Sum_probs=33.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
++|..-||.|-......+|..+++.|++|.++..+... .+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~-sl~~~ 45 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH-SLSDS 45 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc-cHHHH
Confidence 34444666799999999999999999999999998753 44443
No 185
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=83.61 E-value=6.4 Score=36.07 Aligned_cols=39 Identities=10% Similarity=0.199 Sum_probs=30.9
Q ss_pred eecccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecc
Q 012314 331 MISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWP 372 (466)
Q Consensus 331 ~~~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P 372 (466)
+.+-.+-.+|+.+++. +||-.+ ++-.||+.+|||++++.
T Consensus 187 ~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 187 IDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFG 225 (269)
T ss_pred ECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEec
Confidence 3466777899988776 888754 36699999999999985
No 186
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=83.20 E-value=28 Score=30.15 Aligned_cols=42 Identities=17% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012314 3 RPRVLVMPA--PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (466)
Q Consensus 3 ~~~il~~~~--~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (466)
.+|++.++. ++.|=..-...||..|+++|++|.++=.+....
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNS 59 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCh
Confidence 455555553 345788889999999999999999986654433
No 187
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=82.61 E-value=2.3 Score=36.59 Aligned_cols=45 Identities=11% Similarity=-0.052 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012314 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (466)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (466)
+.+||++--.|+.|=+.-...++++|.++||+|.++.++.....+
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 456777666555444443799999999999999999997665443
No 188
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=82.57 E-value=5.5 Score=35.17 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=36.2
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 6 VLVMPA-PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 6 il~~~~-~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
|.|+.. ||.|=..-.+.||.+|+++|-.|+++=.++++......
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~ 48 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWA 48 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHH
Confidence 444444 45599999999999999999999999999988876543
No 189
>PRK12342 hypothetical protein; Provisional
Probab=81.86 E-value=16 Score=33.03 Aligned_cols=95 Identities=13% Similarity=0.039 Sum_probs=52.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcch--HH-H-HHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHH
Q 012314 20 LLEFSQCLAKHGFRVTFVNTDYNH--KR-V-VESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEE 95 (466)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~--~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (466)
.++-|-+|++.|.+||+++-.+.. .. + ++...-- ....+... ++.+... + .+ ..-..+..
T Consensus 40 AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alamG--aD~avli~--d~~~~g~----D------~~--ata~~La~ 103 (254)
T PRK12342 40 AIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSRG--PHSLYLVQ--DAQLEHA----L------PL--DTAKALAA 103 (254)
T ss_pred HHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHcC--CCEEEEEe--cCccCCC----C------HH--HHHHHHHH
Confidence 466677787778999999987643 22 3 3232100 00111111 1111111 1 11 01223444
Q ss_pred HHHHHhcCCCCCccEEEeCCCch------hHHHHHHHcCCceEEecc
Q 012314 96 LIEEINSREDEKIDCFIADGNIG------WSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 96 ll~~l~~~~~~~~DlvV~D~~~~------~~~~~A~~lgiP~v~~~~ 136 (466)
.++. ..||+|++-..+. -+..+|+.||+|++.+..
T Consensus 104 ~i~~------~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 104 AIEK------IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHH------hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 5554 4599999865433 488999999999998764
No 190
>PRK06849 hypothetical protein; Provisional
Probab=81.77 E-value=9.3 Score=37.20 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 42 (466)
+++|++.. +.....+.+++.|.++||+|+++.....
T Consensus 4 ~~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 4 KKTVLITG----ARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 45666653 2222588999999999999999988653
No 191
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=81.74 E-value=4.1 Score=32.88 Aligned_cols=48 Identities=29% Similarity=0.314 Sum_probs=41.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
|++.||++.+.+..||-.-.--+++.|+..|.+|.....-...+.+..
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~ 57 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVR 57 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHH
Confidence 578999999999889999999999999999999998887665554433
No 192
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=81.36 E-value=5.7 Score=34.09 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=49.6
Q ss_pred CCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHH-HHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHH
Q 012314 11 APAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYNHKR-VVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQ 87 (466)
Q Consensus 11 ~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (466)
..+-|-+.....|+++|.++ |+.|.+-++...... +.+.. .+.+....+|-+
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~------~~~v~~~~~P~D------------------- 82 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL------PDRVDVQYLPLD------------------- 82 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-------GGG-SEEE---S-------------------
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC------CCCeEEEEeCcc-------------------
Confidence 35569999999999999987 899998888554443 32221 012223323411
Q ss_pred hccHHHHHHHHHHhcCCCCCccEEEeCCCch--hHHHHHHHcCCceEEec
Q 012314 88 VMPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 88 ~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgiP~v~~~ 135 (466)
....++.+++. .+||++|.-.... -....|++.|||.+.+.
T Consensus 83 -~~~~~~rfl~~------~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 -FPWAVRRFLDH------WRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp -SHHHHHHHHHH------H--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred -CHHHHHHHHHH------hCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 34456777777 6789988766555 45557788899999875
No 193
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=81.19 E-value=2.5 Score=33.78 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=35.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
+||++...++.+=+. ...+.++|.++|++|.++.++.....+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 467777777765555 999999999999999999998777766554
No 194
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=80.80 E-value=16 Score=38.86 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=65.7
Q ss_pred eecccchh---hhhcCCCccccee---ccCCc-hhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcC
Q 012314 331 MISWAPQL---RVLNHPSIACFLS---HCGWN-STMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIIT 403 (466)
Q Consensus 331 ~~~~~p~~---~ll~~~~~~~~i~---hgG~~-s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~ 403 (466)
+.+++++. .++..+++ ++. .-|.| ++.|++++|+|-...|...+--.-+. + +.-|+.+++ .+
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~P-----~d 414 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVNP-----ND 414 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEECC-----CC
Confidence 33677765 46666776 664 33554 66999999765222222221111111 2 234777754 57
Q ss_pred HHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Q 012314 404 REEIKNKVDQVLGNQ--DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNA 456 (466)
Q Consensus 404 ~~~l~~~i~~ll~~~--~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~ 456 (466)
.++++++|.++|+.+ +.+++..++.+.+.. -+...-++++++.+.+..
T Consensus 415 ~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 415 IEGIAAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELREAA 464 (726)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHH
Confidence 999999999999753 455555555555432 456666777777666653
No 195
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=80.60 E-value=3.8 Score=34.53 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHh-CCCEEEEEe
Q 012314 16 HVIPLLEFSQCLAK-HGFRVTFVN 38 (466)
Q Consensus 16 H~~p~l~la~~L~~-rGh~Vt~~~ 38 (466)
|.....+|+++|.+ +|.++.+..
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v 24 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEV 24 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 78889999999987 565544443
No 196
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=80.52 E-value=15 Score=33.03 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHH
Q 012314 16 HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEE 95 (466)
Q Consensus 16 H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (466)
|.--+.+|+++|.+. |+|+++.+...+........ ....+++..+..+ ........ ...+.-
T Consensus 12 ~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait----~~~pl~~~~~~~~---~~~v~GTP----------aDcV~~ 73 (250)
T PRK00346 12 HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLT----LTRPLRVEKVDNG---FYAVDGTP----------TDCVHL 73 (250)
T ss_pred CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCccccc----CCCCeEEEEecCC---eEEECCcH----------HHHHHH
Confidence 334488899999988 79999999877665544321 1123444443211 00000000 011121
Q ss_pred HHHHHhcCCCCCccEEEeCCC-------------chhHHHHHHHcCCceEEecc
Q 012314 96 LIEEINSREDEKIDCFIADGN-------------IGWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 96 ll~~l~~~~~~~~DlvV~D~~-------------~~~~~~~A~~lgiP~v~~~~ 136 (466)
-+..+.. .+||+||.-.. +..|..-|..+|||.+.++.
T Consensus 74 gl~~l~~---~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 74 ALNGLLD---PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred HHHhhcc---CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 2222222 47999996532 22455667788999999874
No 197
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=79.96 E-value=2.3 Score=35.83 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=26.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (466)
|||.++.-.|. +- ..|+++...|||+||-++-.+.+-
T Consensus 1 mKIaiIgAsG~--~G--s~i~~EA~~RGHeVTAivRn~~K~ 37 (211)
T COG2910 1 MKIAIIGASGK--AG--SRILKEALKRGHEVTAIVRNASKL 37 (211)
T ss_pred CeEEEEecCch--hH--HHHHHHHHhCCCeeEEEEeChHhc
Confidence 46777765544 32 367899999999999999865433
No 198
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=79.92 E-value=1.6 Score=39.85 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=71.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
+++...|+.|-..-++.+|..++.+ |+.|.+++..-..+.+........ .++....+..+.-..+...........
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~---s~v~~~~i~~g~l~~~e~~~~~~~~~~ 98 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARL---SGVPYNKIRSGDLSDEEFERLQAAAEK 98 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHH---HTSTHHHHHCCGCHHHHHHHHHHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh---hcchhhhhhccccCHHHHHHHHHHHHH
Confidence 5566678889999999999999987 699999999866555433321100 112111111110000001111111111
Q ss_pred HHHh----------ccHHHHHHHHHHhcCCCCCccEEEeCCCchh-------------------HHHHHHHcCCceEEec
Q 012314 85 CLQV----------MPGKLEELIEEINSREDEKIDCFIADGNIGW-------------------SMEIAKKMNVRGAVFW 135 (466)
Q Consensus 85 ~~~~----------~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~-------------------~~~~A~~lgiP~v~~~ 135 (466)
+.+. ....+++.++.++... .+.|+||+|++... ...+|..++||++.++
T Consensus 99 l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~-~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~s 177 (259)
T PF03796_consen 99 LSDLPLYIEDTPSLTIDDIESKIRRLKREG-KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIALS 177 (259)
T ss_dssp HHTSEEEEEESSS-BHHHHHHHHHHHHHHS-TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HhhCcEEEECCCCCCHHHHHHHHHHHHhhc-cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEcc
Confidence 2111 1445666676666543 57899999986331 2258889999999976
No 199
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=79.65 E-value=9 Score=33.08 Aligned_cols=114 Identities=17% Similarity=0.126 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHH---HHHHHHHhccHHH
Q 012314 17 VIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK---LIEKCLQVMPGKL 93 (466)
Q Consensus 17 ~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 93 (466)
+.-...+...+..+|-+|.|+++......+....... .+..++. ...-.+ ...+... ....+...-...+
T Consensus 42 L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~----~~~~~i~--~rw~~G-~LTN~~~~~~~~~~~~~~~~~~~ 114 (193)
T cd01425 42 LRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAER----TGSFYVN--GRWLGG-TLTNWKTIRKSIKRLKKLEKEKL 114 (193)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH----cCCeeec--CeecCC-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 3345556677778899999999986444333221110 1121211 111111 1111111 1111111001223
Q ss_pred HHHHHHHhcCCCCCccEEEeCCC--chhHHHHHHHcCCceEEeccch
Q 012314 94 EELIEEINSREDEKIDCFIADGN--IGWSMEIAKKMNVRGAVFWPSS 138 (466)
Q Consensus 94 ~~ll~~l~~~~~~~~DlvV~D~~--~~~~~~~A~~lgiP~v~~~~~~ 138 (466)
+..+..++... ..||+||.-.- ...+..=|.++|||.|.+.-..
T Consensus 115 ~k~~~g~~~~~-~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 115 EKNLGGIKDMF-RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred HHhcccccccc-cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 33333333322 67999886542 2278888999999999987544
No 200
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=79.49 E-value=8.9 Score=38.31 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=57.6
Q ss_pred cccchhh---hhcCCCccccee---ccCCc-hhhhhhhcCcc----eeecccccchhhhHHHHHHhhhceeEeecCCCCC
Q 012314 333 SWAPQLR---VLNHPSIACFLS---HCGWN-STMEGVSNGIP----FLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGI 401 (466)
Q Consensus 333 ~~~p~~~---ll~~~~~~~~i~---hgG~~-s~~eal~~GvP----~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~ 401 (466)
+++++.+ ++..+++ +|. +-|.| ++.||+++|+| +|+.-..+ .+. . ..-|..+++
T Consensus 347 g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~---~-~~~g~lv~p----- 411 (460)
T cd03788 347 RSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAE---E-LSGALLVNP----- 411 (460)
T ss_pred CCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----chh---h-cCCCEEECC-----
Confidence 6677654 6777777 663 44554 66999999999 55442221 111 1 134666643
Q ss_pred cCHHHHHHHHHHHhcCH-H-HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 012314 402 ITREEIKNKVDQVLGNQ-D-FKARALELKEKAMSSVREGGSSYKTFQNFLQW 451 (466)
Q Consensus 402 ~~~~~l~~~i~~ll~~~-~-~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~ 451 (466)
-+.++++++|.++++++ + -+++.++.++.+. .-+...-+++++..
T Consensus 412 ~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~ 458 (460)
T cd03788 412 YDIDEVADAIHRALTMPLEERRERHRKLREYVR-----THDVQAWANSFLDD 458 (460)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHh
Confidence 47899999999999865 2 2333333333332 23445555555543
No 201
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=79.19 E-value=23 Score=26.05 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHHHH
Q 012314 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEE 99 (466)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 99 (466)
++.+++.|++.|++| ++|. .....+++. ++........+... .+ .+++.
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~-gTa~~L~~~---------Gi~~~~~~~ki~~~-----------------~~---~i~~~ 50 (90)
T smart00851 2 LVELAKRLAELGFEL-VATG-GTAKFLREA---------GLPVKTLHPKVHGG-----------------IL---AILDL 50 (90)
T ss_pred HHHHHHHHHHCCCEE-EEcc-HHHHHHHHC---------CCcceeccCCCCCC-----------------CH---HHHHH
Confidence 468999999999998 3444 555666654 44432111101010 01 24444
Q ss_pred HhcCCCCCccEEEeCCCc---------hhHHHHHHHcCCceE
Q 012314 100 INSREDEKIDCFIADGNI---------GWSMEIAKKMNVRGA 132 (466)
Q Consensus 100 l~~~~~~~~DlvV~D~~~---------~~~~~~A~~lgiP~v 132 (466)
++. .++|+||..+.. ..-..+|...+||++
T Consensus 51 i~~---g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 51 IKN---GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred hcC---CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 444 789999986531 123346888899875
No 202
>PHA02542 41 41 helicase; Provisional
Probab=79.10 E-value=9.8 Score=38.00 Aligned_cols=42 Identities=10% Similarity=0.321 Sum_probs=34.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (466)
+++...|+.|=..-.+.+|...++.|+.|.|++-.-....+.
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~ 234 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIA 234 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHH
Confidence 566778888999999999999988999999999876555443
No 203
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=78.34 E-value=4.3 Score=31.84 Aligned_cols=38 Identities=8% Similarity=0.103 Sum_probs=26.7
Q ss_pred CEEEEEcCCCcc---CHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 4 PRVLVMPAPAQG---HVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 4 ~~il~~~~~~~G---H~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
+||+|+.-|-.+ .-.-..+++.+-.+|||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 578888776443 34568899999999999999999875
No 204
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=78.14 E-value=43 Score=28.63 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=62.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc-----chHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY-----NHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (466)
--|.+++..|.|-....+.+|-+-+.+|.+|-++-.-. .+...... ...++.++.++.++.-.....
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~------~~~~v~~~~~~~g~tw~~~~~-- 100 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEK------FGLGVEFHGMGEGFTWETQDR-- 100 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHh------hccceeEEecCCceeCCCcCc--
Confidence 34788889999999988888888878888877765422 11122221 124688888886665442211
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch
Q 012314 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (466)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~ 118 (466)
..-. ..+...+....+.+.+ .++|+||.|.+.+
T Consensus 101 ~~d~----~aa~~~w~~a~~~l~~---~~ydlviLDEl~~ 133 (198)
T COG2109 101 EADI----AAAKAGWEHAKEALAD---GKYDLVILDELNY 133 (198)
T ss_pred HHHH----HHHHHHHHHHHHHHhC---CCCCEEEEehhhH
Confidence 1111 2334445555555555 7899999998655
No 205
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=77.97 E-value=21 Score=35.37 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.2
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCceEEec
Q 012314 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~ 135 (466)
.+||++|.... ...+|+++|||++.+.
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 68999999864 6789999999999865
No 206
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=77.97 E-value=64 Score=30.61 Aligned_cols=108 Identities=17% Similarity=0.220 Sum_probs=59.4
Q ss_pred EEcCCCc--cCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHH
Q 012314 8 VMPAPAQ--GHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKC 85 (466)
Q Consensus 8 ~~~~~~~--GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (466)
|+|..|. +|++ .+.+.|.+.||.|.++++... +++ +.++.. .++..+.+|...-..+ ..+. .+
T Consensus 10 f~P~~ggveshiy---~lSq~li~lghkVvvithayg-~r~---girylt--~glkVyylp~~v~~n~--tT~p----tv 74 (426)
T KOG1111|consen 10 FYPSTGGVESHIY---ALSQCLIRLGHKVVVITHAYG-NRV---GIRYLT--NGLKVYYLPAVVGYNQ--TTFP----TV 74 (426)
T ss_pred cccCCCChhhhHH---HhhcchhhcCCeEEEEecccc-Ccc---ceeeec--CCceEEEEeeeeeecc--cchh----hh
Confidence 4444433 7777 678999999999999999643 322 111111 2355555542111110 0111 11
Q ss_pred HHhccHHHHHHHHHHhcCCCCCccEEEeCCC-c---hhHHHHHHHcCCceEEeccc
Q 012314 86 LQVMPGKLEELIEEINSREDEKIDCFIADGN-I---GWSMEIAKKMNVRGAVFWPS 137 (466)
Q Consensus 86 ~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~-~---~~~~~~A~~lgiP~v~~~~~ 137 (466)
+ ...+.++.++.+ ++..+|..-.. + .-+..-|+.+|.-.|++-++
T Consensus 75 ~-~~~Pllr~i~lr------E~I~ivhghs~fS~lahe~l~hartMGlktVfTdHS 123 (426)
T KOG1111|consen 75 F-SDFPLLRPILLR------ERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHS 123 (426)
T ss_pred h-ccCcccchhhhh------hceEEEecCChHHHHHHHHHHHHHhcCceEEEeccc
Confidence 1 124566666666 56666664432 1 14667889999888887654
No 207
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=77.39 E-value=30 Score=31.44 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 16 HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 16 H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
|.--+.+|+++|.+.| +|+++.+...+.....
T Consensus 12 ~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~ 43 (266)
T PRK13934 12 HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGL 43 (266)
T ss_pred CCHHHHHHHHHHHhCC-cEEEEccCCCCccccc
Confidence 4455889999998887 7999999877665543
No 208
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=77.34 E-value=26 Score=31.85 Aligned_cols=102 Identities=9% Similarity=-0.014 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhC---CCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHH
Q 012314 16 HVIPLLEFSQCLAKH---GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGK 92 (466)
Q Consensus 16 H~~p~l~la~~L~~r---Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (466)
|.--+.+|+++|.+. |++|+++.+...+........ ....++...+.++. ........-+- .-.
T Consensus 12 ~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT----~~~pl~~~~~~~~~---yav~GTPaDCV------~la 78 (261)
T PRK13931 12 NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCIS----YTHPMMIAELGPRR---FAAEGSPADCV------LAA 78 (261)
T ss_pred CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCccccc----CCCCeEEEEeCCCe---EEEcCchHHHH------HHH
Confidence 334467777877663 479999999877665544321 11234444433110 00000000011 112
Q ss_pred HHHHHHHHhcCCCCCccEEEeCCC----------ch---hHHHHHHHcCCceEEecc
Q 012314 93 LEELIEEINSREDEKIDCFIADGN----------IG---WSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 93 ~~~ll~~l~~~~~~~~DlvV~D~~----------~~---~~~~~A~~lgiP~v~~~~ 136 (466)
+..++.. .+||+||.-.. +. .|..-|..+|||.+.++.
T Consensus 79 l~~~~~~------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 79 LYDVMKD------APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHHhcCC------CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 2233321 47999996432 22 455566788999999874
No 209
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=77.21 E-value=17 Score=31.42 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=32.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKR 45 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (466)
.|+|+-..|-|=..-...||..+..+|.+|.+++.+.+...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g 43 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc
Confidence 45666677789999999999999999999999999865543
No 210
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=76.74 E-value=73 Score=30.60 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=55.7
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCC-C-----CCchhHHHHhcCCce--eecccchh---hhhcCCCcccc
Q 012314 281 ILDQVQFQELALGLELCKRPFLWVVRPDITTDAN-D-----RYPEGFQERVAARGQ--MISWAPQL---RVLNHPSIACF 349 (466)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~-~-----~~~~~~~~~~~~n~~--~~~~~p~~---~ll~~~~~~~~ 349 (466)
..+...+..++++++..+.++...+..+...... . .+..+- .....++. +.+|+||. .||-.|++ -
T Consensus 191 ~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~-~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~--N 267 (374)
T PF10093_consen 191 CYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGD-SWQRGNLTLHVLPFVPQDDYDRLLWACDF--N 267 (374)
T ss_pred eCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCcc-ccccCCeEEEECCCCCHHHHHHHHHhCcc--c
Confidence 3455567777777777776665555433110000 0 000000 00123444 45999975 59977775 3
Q ss_pred eeccCCchhhhhhhcCcceeecccccchhhhHHHH
Q 012314 350 LSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYI 384 (466)
Q Consensus 350 i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv 384 (466)
+=. |=-|+.-|..+|+|.| -+..=|.++|+..
T Consensus 268 fVR-GEDSfVRAqwAgkPFv--WhIYpQ~d~aHl~ 299 (374)
T PF10093_consen 268 FVR-GEDSFVRAQWAGKPFV--WHIYPQEDDAHLD 299 (374)
T ss_pred eEe-cchHHHHHHHhCCCce--EecCcCchhhHHH
Confidence 333 5669999999999997 4445576666654
No 211
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=76.41 E-value=35 Score=33.00 Aligned_cols=102 Identities=24% Similarity=0.319 Sum_probs=64.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKC 85 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (466)
|++---||.|--.=++.++..|+++| .|.+++.......++-... .+. ++. +. +..+
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~-------RL~---~~~--~~----------l~l~ 152 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRAD-------RLG---LPT--NN----------LYLL 152 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHH-------HhC---CCc--cc----------eEEe
Confidence 45555778888888999999999999 9999999877665543221 110 000 00 1111
Q ss_pred HHhccHHHHHHHHHHhcCCCCCccEEEeCCCch---------------------hHHHHHHHcCCceEEecc
Q 012314 86 LQVMPGKLEELIEEINSREDEKIDCFIADGNIG---------------------WSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 86 ~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~---------------------~~~~~A~~lgiP~v~~~~ 136 (466)
. .-.++++++.+.. .+||++|.|..-. ....+|+..+|+.+.+.+
T Consensus 153 a---Et~~e~I~~~l~~---~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 153 A---ETNLEDIIAELEQ---EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred h---hcCHHHHHHHHHh---cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 1 1134555555555 7899999997511 112477888899887653
No 212
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=76.36 E-value=4.2 Score=36.57 Aligned_cols=94 Identities=10% Similarity=0.143 Sum_probs=53.0
Q ss_pred CCeEEEEEeccc---cccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCC----ce-eecccc--h
Q 012314 268 PSSVVYVSFGSF---TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAAR----GQ-MISWAP--Q 337 (466)
Q Consensus 268 ~~~~v~vs~Gs~---~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n----~~-~~~~~p--~ 337 (466)
+++.|.+..|+. ..++.+.+..+++.+.+.++++++..+.. +. .....+...+. +. +.+-.+ +
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~l~e 176 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE------EQ-EKEIADQIAAGLQNPVINLAGKTSLRE 176 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH------HH-HHHHHHHHHTTHTTTTEEETTTS-HHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch------HH-HHHHHHHHHHhcccceEeecCCCCHHH
Confidence 456888888875 45678889999999987776666554433 10 12222222222 22 323223 2
Q ss_pred -hhhhcCCCcccceeccCCchhhhhhhcCcceeec
Q 012314 338 -LRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCW 371 (466)
Q Consensus 338 -~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~ 371 (466)
..++.++++ +|+. -.|.+.=|.+.|+|+|++
T Consensus 177 ~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 177 LAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 358877776 8886 567889999999999988
No 213
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=76.34 E-value=18 Score=31.79 Aligned_cols=89 Identities=16% Similarity=0.240 Sum_probs=58.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHH
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
+.||++.+.++-.|-....-++..|..+|++|+.+...-..+.+.+.... .+-+++.++-...
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~-----~~~~~V~lS~~~~------------ 150 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE-----HKADIIGLSGLLV------------ 150 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEccchh------------
Confidence 46899999999999999999999999999999999987544444333211 2344444432211
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEeC
Q 012314 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIAD 114 (466)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D 114 (466)
.....++++++.+++.+ .++.++|.-
T Consensus 151 -----~~~~~~~~~i~~L~~~~-~~~~i~vGG 176 (213)
T cd02069 151 -----PSLDEMVEVAEEMNRRG-IKIPLLIGG 176 (213)
T ss_pred -----ccHHHHHHHHHHHHhcC-CCCeEEEEC
Confidence 12344566677666643 345555555
No 214
>PRK08506 replicative DNA helicase; Provisional
Probab=76.28 E-value=18 Score=36.26 Aligned_cols=43 Identities=12% Similarity=0.249 Sum_probs=35.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
+++...|+.|=..-++.+|...++.|+.|.|++..-....+..
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~ 237 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLML 237 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHH
Confidence 5666788889999999999998889999999999865555443
No 215
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=76.21 E-value=7.1 Score=29.16 Aligned_cols=84 Identities=20% Similarity=0.187 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHHHH
Q 012314 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEE 99 (466)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 99 (466)
++.+|+.|.+.||+ ++++......+.+. ++....+.......+... ....+.++++.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~---------Gi~~~~v~~~~~~~~~~~------------g~~~i~~~i~~ 58 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEH---------GIEVTEVVNKIGEGESPD------------GRVQIMDLIKN 58 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHT---------T--EEECCEEHSTG-GGT------------HCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHc---------CCCceeeeeecccCccCC------------chhHHHHHHHc
Confidence 57899999999965 56666777777765 566444332111110000 00034444444
Q ss_pred HhcCCCCCccEEEeCCCchhH---------HHHHHHcCCceE
Q 012314 100 INSREDEKIDCFIADGNIGWS---------MEIAKKMNVRGA 132 (466)
Q Consensus 100 l~~~~~~~~DlvV~D~~~~~~---------~~~A~~lgiP~v 132 (466)
.++|+||..+..... ..+|...+||++
T Consensus 59 ------~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 59 ------GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ------TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred ------CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 789999988743311 347788888876
No 216
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=75.40 E-value=74 Score=30.03 Aligned_cols=340 Identities=13% Similarity=0.079 Sum_probs=153.0
Q ss_pred CCCccCHHHHHHHHHHHHh--CCCEEEEEeCCcch--H-HHHHhhhcCC--CCCCCeEEEecCCCC-CCCCCCccHHHHH
Q 012314 11 APAQGHVIPLLEFSQCLAK--HGFRVTFVNTDYNH--K-RVVESLQGKN--YLGEQIHLVSIPDGM-EPWEDRNDLGKLI 82 (466)
Q Consensus 11 ~~~~GH~~p~l~la~~L~~--rGh~Vt~~~~~~~~--~-~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (466)
..|.|-=..+=.-.+.+.+ ..|...+.+.+-+. + .+.+.-+.+. -...++.|+.+--.. -+.........+.
T Consensus 54 NAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVea~~~~hfTllg 133 (465)
T KOG1387|consen 54 NAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLVEASTWKHFTLLG 133 (465)
T ss_pred cCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeeeecccccceehHH
Confidence 3344333333333444443 35777777776322 1 2222222111 133567776654211 1111222222222
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHH-HHHHHcCCceEEeccchhHHHHHHhhcccccccCccCCCC
Q 012314 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSM-EIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHG 161 (466)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~-~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (466)
++ ...+--.++++++ ..||+.|-.+-++... .+++..++|++.+.+.|.......-.....
T Consensus 134 Qa-igsmIl~~Eai~r-------~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qr---------- 195 (465)
T KOG1387|consen 134 QA-IGSMILAFEAIIR-------FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQR---------- 195 (465)
T ss_pred HH-HHHHHHHHHHHHh-------CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhh----------
Confidence 22 2333333444444 6899988777666444 455566899999887666433332111000
Q ss_pred CCCccccccccCCCCCCCcccccccccCCCCchhHHHHHHHHHHhhh-ccccEEEEcChhhccHHHHhhcCCcce-ec-c
Q 012314 162 TPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAM-IAVNFHFCNSTYELESEAFTTFPELLP-IG-P 238 (466)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vl~~s~~~le~~~~~~~p~v~~-VG-p 238 (466)
+.. ..+ ....-.+++.|....... ..+|.+++||.+.=..-..-|..+-.. |= |
T Consensus 196 --------------------q~s-~~l--~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~~~~~~iVyPP 252 (465)
T KOG1387|consen 196 --------------------QKS-GIL--VWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQSNTCSIVYPP 252 (465)
T ss_pred --------------------hhc-chh--hhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhhccceeEEcCC
Confidence 000 000 011122455566655555 778899999988655543334332211 21 1
Q ss_pred ccCCCCCCCCCCCcccCCccchhhhccCCCCeEEEEEeccccccCH-HHHHHHHHHHHhCC-----CCE-EEEEcCCCCC
Q 012314 239 LLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQ-VQFQELALGLELCK-----RPF-LWVVRPDITT 311 (466)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~~-----~~~-i~~~~~~~~~ 311 (466)
+... ++.+-....+++.+..+++|-...... ..++-.+--+.+.+ .++ +..+|+....
T Consensus 253 C~~e---------------~lks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRne 317 (465)
T KOG1387|consen 253 CSTE---------------DLKSKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNE 317 (465)
T ss_pred CCHH---------------HHHHHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCCh
Confidence 1111 222222222345688888885421111 12222222222222 222 3344443221
Q ss_pred CCCCCCc--hhHHH--HhcCCceeecccchhh---hhcCCCcccceeccCCc-----hhhhhhhcCcceeecccccchhh
Q 012314 312 DANDRYP--EGFQE--RVAARGQMISWAPQLR---VLNHPSIACFLSHCGWN-----STMEGVSNGIPFLCWPYFGDQFL 379 (466)
Q Consensus 312 ~~~~~~~--~~~~~--~~~~n~~~~~~~p~~~---ll~~~~~~~~i~hgG~~-----s~~eal~~GvP~l~~P~~~DQ~~ 379 (466)
++.+.+. ++..+ +.+.++.+..-+|+.. +|+.+.. -| |+=|| +|.|++++|.=.|+=-..+--.+
T Consensus 318 eD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~i--Gv-h~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lD 394 (465)
T KOG1387|consen 318 EDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATI--GV-HTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLD 394 (465)
T ss_pred hhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhcccee--eh-hhhhhhhcchhHHHHHhcCceEEEeCCCCCcee
Confidence 1111110 01111 2357788888888875 5544443 22 33333 78999999965443221111111
Q ss_pred hHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcC
Q 012314 380 NERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 417 (466)
Q Consensus 380 ~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 417 (466)
.. .. =.|..-. .-..|.++-++++-+++..
T Consensus 395 IV---~~--~~G~~tG---Fla~t~~EYaE~iLkIv~~ 424 (465)
T KOG1387|consen 395 IV---TP--WDGETTG---FLAPTDEEYAEAILKIVKL 424 (465)
T ss_pred ee---ec--cCCccce---eecCChHHHHHHHHHHHHc
Confidence 10 01 0111111 1235778888888888753
No 217
>PRK08006 replicative DNA helicase; Provisional
Probab=75.17 E-value=24 Score=35.28 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=68.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
+++..-|+.|=..-.+.+|...+ +.|+.|.|++..-....+.....+. ..++....+..+.-..+...........
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~---~~~v~~~~i~~~~l~~~e~~~~~~a~~~ 303 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLAS---LSRVDQTRIRTGQLDDEDWARISGTMGI 303 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHH---hcCCCHHHhhcCCCCHHHHHHHHHHHHH
Confidence 56667888899999999998887 4699999999875554443332111 1123322222111011111111212222
Q ss_pred HHHh-----------ccHHHHHHHHHHhcCCCCCccEEEeCCCchh-------------------HHHHHHHcCCceEEe
Q 012314 85 CLQV-----------MPGKLEELIEEINSREDEKIDCFIADGNIGW-------------------SMEIAKKMNVRGAVF 134 (466)
Q Consensus 85 ~~~~-----------~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~-------------------~~~~A~~lgiP~v~~ 134 (466)
+... ....++..++++.... .+.|+||+|++... .-.+|+.++||++.+
T Consensus 304 ~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~-~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~L 382 (471)
T PRK08006 304 LLEKRNMYIDDSSGLTPTEVRSRARRIFREH-GGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVAL 382 (471)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHHHhc-CCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 2111 1334444444443321 25899999985321 114788899999997
Q ss_pred c
Q 012314 135 W 135 (466)
Q Consensus 135 ~ 135 (466)
+
T Consensus 383 s 383 (471)
T PRK08006 383 S 383 (471)
T ss_pred E
Confidence 6
No 218
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=75.16 E-value=38 Score=26.59 Aligned_cols=109 Identities=18% Similarity=0.138 Sum_probs=64.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
|+++.+.++-.|..-..-++.-|...|++|.........+.+..... ..+-.++.++...
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~-----~~~~d~V~iS~~~--------------- 60 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI-----QEDVDVIGLSSLS--------------- 60 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-----HcCCCEEEEcccc---------------
Confidence 58999999999999999999999999999999998644343333211 1234444443211
Q ss_pred HHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEec
Q 012314 85 CLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~ 135 (466)
....+.++++++.+++.+...+-+++.-.....-......+|+=.++-.
T Consensus 61 --~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 61 --GGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGP 109 (122)
T ss_pred --hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECC
Confidence 1123345666666665321233444554322223334457787655533
No 219
>PRK08181 transposase; Validated
Probab=74.93 E-value=30 Score=31.72 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=24.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
.+++|+-.+|.|=..=+.+++.++.++|+.|.|++...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~ 144 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD 144 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHH
Confidence 35666666666555556677777777777777776543
No 220
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=74.81 E-value=22 Score=35.03 Aligned_cols=43 Identities=19% Similarity=0.372 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~~ 48 (466)
+++...|+.|=..-++.+|..++ +.|+.|.|++..-....+..
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGE 240 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence 55666788899999999998887 67999999998765554433
No 221
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=74.51 E-value=34 Score=28.42 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=24.3
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCEEEEE
Q 012314 10 PAPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (466)
Q Consensus 10 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~ 37 (466)
+.++.|-..-.+.|++.|.++|.+|-++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3456688899999999999999999886
No 222
>PRK06526 transposase; Provisional
Probab=74.37 E-value=22 Score=32.20 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
+.+++++-.+|.|=..=+.+|+.++.++|+.|.|.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~ 136 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ 136 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH
Confidence 346777777777777777888888888999988865543
No 223
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=74.25 E-value=4.3 Score=39.20 Aligned_cols=97 Identities=11% Similarity=0.166 Sum_probs=58.4
Q ss_pred cCCceee-cccchhhhhcCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHH----HHHHhhhceeEeecCCCC
Q 012314 326 AARGQMI-SWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNER----YICDFWKVGLKFDRDEGG 400 (466)
Q Consensus 326 ~~n~~~~-~~~p~~~ll~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~----rv~~~~G~G~~l~~~~~~ 400 (466)
.+++..+ +..+..++|..+++ +||=- .+.+.|.+..++|+|......|+....+ -..+ ...|..+
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~-~~pg~~~------ 320 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEE-DLPGPIV------ 320 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTT-SSSS-EE------
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHh-hCCCcee------
Confidence 3555554 44567789977777 99976 3477999999999998876666553211 0112 1333333
Q ss_pred CcCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHH
Q 012314 401 IITREEIKNKVDQVLGNQ-DFKARALELKEKAMS 433 (466)
Q Consensus 401 ~~~~~~l~~~i~~ll~~~-~~r~~a~~~~~~~~~ 433 (466)
-+.++|.++|..++.+. .++++-++..+++..
T Consensus 321 -~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~ 353 (369)
T PF04464_consen 321 -YNFEELIEAIENIIENPDEYKEKREKFRDKFFK 353 (369)
T ss_dssp -SSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHST
T ss_pred -CCHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCC
Confidence 36899999999988765 455666666666654
No 224
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=73.99 E-value=45 Score=35.32 Aligned_cols=161 Identities=11% Similarity=0.187 Sum_probs=96.4
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhc---CCc---------eeecccch
Q 012314 270 SVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVA---ARG---------QMISWAPQ 337 (466)
Q Consensus 270 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~n~---------~~~~~~p~ 337 (466)
..+|+++=.+...|....+..++.+.+.|.++++++|+... ....+-.+.. .+- .-.+-+|.
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~------TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~ 645 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKE------TAEAIAREIGIFSEDEDVSSMALTGSEFDDLSD 645 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHH------HHHHHHHHhCCCcCCccccccccchhhhhcCCH
Confidence 48888775544444556777788889999999999887611 1111100000 000 00111221
Q ss_pred h---hhhcCCCcccceeccCC---chhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHH-HH
Q 012314 338 L---RVLNHPSIACFLSHCGW---NSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIK-NK 410 (466)
Q Consensus 338 ~---~ll~~~~~~~~i~hgG~---~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~-~~ 410 (466)
. .+..++. ++..+-. --+.|+|+.-.=++++ ++|--.-|-.+..+ -+|+.+. .+..+++ +|
T Consensus 646 ~~~~~~~~~~~---vFaR~~P~HK~kIVeaLq~~geivAM--TGDGVNDApALK~A-dIGIAMG------~~GTdVaKeA 713 (972)
T KOG0202|consen 646 EELDDAVRRVL---VFARAEPQHKLKIVEALQSRGEVVAM--TGDGVNDAPALKKA-DIGIAMG------ISGTDVAKEA 713 (972)
T ss_pred HHHHHHhhcce---EEEecCchhHHHHHHHHHhcCCEEEe--cCCCccchhhhhhc-ccceeec------CCccHhhHhh
Confidence 1 1222222 2333322 2467888877777765 67777777778775 8888874 2445554 44
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Q 012314 411 VDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNA 456 (466)
Q Consensus 411 i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~ 456 (466)
=+-+|.|+.|.. +.+|++||-+...+|.+||.++.+.+
T Consensus 714 sDMVL~DDnFst--------IvaAVEEGr~IynNik~Fir~~lSsn 751 (972)
T KOG0202|consen 714 SDMVLADDNFST--------IVAAVEEGRAIYNNIKNFIRYLLSSN 751 (972)
T ss_pred hhcEEecCcHHH--------HHHHHHHhHHHHHHHHHHHHHHHhhh
Confidence 455578887765 34577789999999999999988763
No 225
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=73.78 E-value=23 Score=34.77 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=35.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (466)
.|+++-.+|.|=..-...||..|.++|++|.+++.+.+....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA 143 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGA 143 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhH
Confidence 456666778899999999999999999999999998776443
No 226
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=73.74 E-value=33 Score=31.07 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=52.8
Q ss_pred HHHHHHHHHhC--CCEEEEEeCCcch----HHHHHhhhcCCCCCCCeEEEecCC-CCCCCCCCccHHHHHHHHHHhccHH
Q 012314 20 LLEFSQCLAKH--GFRVTFVNTDYNH----KRVVESLQGKNYLGEQIHLVSIPD-GMEPWEDRNDLGKLIEKCLQVMPGK 92 (466)
Q Consensus 20 ~l~la~~L~~r--Gh~Vt~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (466)
.++.|-+|+++ |.+||+++-.+.. ..+++...- +.. +-+.+.+ .+... + .+ ..-..
T Consensus 41 AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAm----GaD-~avli~d~~~~g~----D------~~--~tA~~ 103 (256)
T PRK03359 41 AIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSR----GPD-ELIVVIDDQFEQA----L------PQ--QTASA 103 (256)
T ss_pred HHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHc----CCC-EEEEEecCcccCc----C------HH--HHHHH
Confidence 46667777776 3799999987644 335544310 011 1111111 11111 1 11 11223
Q ss_pred HHHHHHHHhcCCCCCccEEEeCCCch------hHHHHHHHcCCceEEeccc
Q 012314 93 LEELIEEINSREDEKIDCFIADGNIG------WSMEIAKKMNVRGAVFWPS 137 (466)
Q Consensus 93 ~~~ll~~l~~~~~~~~DlvV~D~~~~------~~~~~A~~lgiP~v~~~~~ 137 (466)
+...++. ..||+|++-..+. -+..+|+.||+|++.+...
T Consensus 104 La~ai~~------~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 104 LAAAAQK------AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHH------hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 4455555 4599999855332 6788999999999987643
No 227
>PRK05973 replicative DNA helicase; Provisional
Probab=73.72 E-value=33 Score=30.68 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=37.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
-+++...||.|=..-.+.++.+-+++|+.|.|++.....+.+...
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 356677888899999999999988899999999998776665544
No 228
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=73.57 E-value=5.8 Score=33.74 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=33.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (466)
..++|.-.+|.|=..=..+++.++.++|+.|.|+......+.+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 4678888888877777899999999999999999886655555
No 229
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=73.54 E-value=17 Score=39.06 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=62.2
Q ss_pred hhhcCCCccccee---ccCCc-hhhhhhhcCcc---eeecccccchhhhHHHHHHhhh-ceeEeecCCCCCcCHHHHHHH
Q 012314 339 RVLNHPSIACFLS---HCGWN-STMEGVSNGIP---FLCWPYFGDQFLNERYICDFWK-VGLKFDRDEGGIITREEIKNK 410 (466)
Q Consensus 339 ~ll~~~~~~~~i~---hgG~~-s~~eal~~GvP---~l~~P~~~DQ~~~a~rv~~~~G-~G~~l~~~~~~~~~~~~l~~~ 410 (466)
.+++.+++ ||. .-|.| ++.|++++|+| ++++. |--..+. . +| -|+.++| .+.++++++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~~---~-l~~~allVnP-----~D~~~lA~A 436 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAGQ---S-LGAGALLVNP-----WNITEVSSA 436 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEee---CCcCchh---h-hcCCeEEECC-----CCHHHHHHH
Confidence 57777777 664 44776 55899999999 33333 2222222 1 34 5777754 589999999
Q ss_pred HHHHhc-CHH-HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012314 411 VDQVLG-NQD-FKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTN 455 (466)
Q Consensus 411 i~~ll~-~~~-~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~ 455 (466)
|.++|+ +++ -+++.+++.+.+.. -+...-.+.+++.+.+.
T Consensus 437 I~~aL~m~~~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 437 IKEALNMSDEERETRHRHNFQYVKT-----HSAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHH
Confidence 999998 444 44455555555553 34556566666666555
No 230
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=73.17 E-value=59 Score=31.40 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=33.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (466)
+++.-.|+.|=-.=++.++..++++|..|.+++.....+.+.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 455567788888889999999999999999998876555443
No 231
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=73.06 E-value=8.8 Score=27.55 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=31.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
.-++++..+...|...+..+|+.|++.|+.|...=..
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~r 52 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHR 52 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 4578888888899999999999999999998865443
No 232
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=73.04 E-value=15 Score=36.35 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEec
Q 012314 94 EELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 94 ~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~ 135 (466)
.++.+.+++ .+||++|.+.. ...+|+++|+|++.++
T Consensus 361 ~el~~~i~~---~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKE---EPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhc---cCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 344444444 78999999975 5788999999999765
No 233
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=72.92 E-value=16 Score=32.74 Aligned_cols=98 Identities=15% Similarity=0.257 Sum_probs=52.2
Q ss_pred CCEEEEEcCCCc-cCH---HHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhhhcCCCCCCCeE--EEecCCCCCCCCC
Q 012314 3 RPRVLVMPAPAQ-GHV---IPLLEFSQCLAKHGFRVTFVNTDYN--HKRVVESLQGKNYLGEQIH--LVSIPDGMEPWED 74 (466)
Q Consensus 3 ~~~il~~~~~~~-GH~---~p~l~la~~L~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 74 (466)
+..|++.+..+. .-- .-+.+|++.|.++|.+|.++.++.. .+.+.... .+.. ...+.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~-------~~~~~~~~~~~-------- 169 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIA-------AGLQNPVINLA-------- 169 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH-------TTHTTTTEEET--------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH-------HhcccceEeec--------
Confidence 356777766544 222 2369999999999988988888766 22222221 1111 11111
Q ss_pred CccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEecc
Q 012314 75 RNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~ 136 (466)
....+.++...++ .-|++|+-- .....+|..+|+|.+.+..
T Consensus 170 --------------~~~~l~e~~ali~-----~a~~~I~~D--tg~~HlA~a~~~p~v~lfg 210 (247)
T PF01075_consen 170 --------------GKTSLRELAALIS-----RADLVIGND--TGPMHLAAALGTPTVALFG 210 (247)
T ss_dssp --------------TTS-HHHHHHHHH-----TSSEEEEES--SHHHHHHHHTT--EEEEES
T ss_pred --------------CCCCHHHHHHHHh-----cCCEEEecC--ChHHHHHHHHhCCEEEEec
Confidence 0112444444442 379999764 4578899999999998754
No 234
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=72.06 E-value=29 Score=32.02 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=34.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (466)
.+|.+--.||-|--.-.-+|.++|.++||+|-++..++...
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 36777778888999989999999999999999999876544
No 235
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=71.97 E-value=14 Score=34.20 Aligned_cols=53 Identities=11% Similarity=0.165 Sum_probs=37.9
Q ss_pred cccceeccCCchhhhhhhc----CcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 346 IACFLSHCGWNSTMEGVSN----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~~----GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
++++|+-||-||+++++.. ++|++.+-. - .+|-. ..++.+++.+.++++++++
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~-------------G-~lGFL------~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGINH-------------G-RLGFI------TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC-------------C-Ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 3449999999999999763 778887731 1 22322 3467889999999998643
No 236
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=71.84 E-value=54 Score=26.82 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=82.1
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeecccchhhhhcCCCcccce
Q 012314 271 VVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFL 350 (466)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i 350 (466)
.|-|-+||.+ +.+.++...+.|+.++..+-..+-+- ...|+.+.+. +- =.....++++|
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSA------HRTPe~m~~y----------a~---~a~~~g~~viI 62 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSA------HRTPEKMFEY----------AE---EAEERGVKVII 62 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEec------cCCHHHHHHH----------HH---HHHHCCCeEEE
Confidence 5677789754 67789999999999998875444322 2345543221 11 01113344466
Q ss_pred eccCCc---hhhhhhhcCcceeeccccc---chhhhHHHHHHhhhceeEeec-CCCCCcCHHHHHHHHHHHhcCHHHHHH
Q 012314 351 SHCGWN---STMEGVSNGIPFLCWPYFG---DQFLNERYICDFWKVGLKFDR-DEGGIITREEIKNKVDQVLGNQDFKAR 423 (466)
Q Consensus 351 ~hgG~~---s~~eal~~GvP~l~~P~~~---DQ~~~a~rv~~~~G~G~~l~~-~~~~~~~~~~l~~~i~~ll~~~~~r~~ 423 (466)
.-.|.- .=+-|-..=+|+|++|... +-.+--.-+.+ +=-|+-+.. .=.+..++.-|+..|-.+ .|++++++
T Consensus 63 AgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQ-MP~GvPVaTvaIg~a~NAallAa~ILa~-~d~~l~~k 140 (162)
T COG0041 63 AGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQ-MPAGVPVATVAIGNAANAALLAAQILAI-KDPELAEK 140 (162)
T ss_pred ecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhc-CCCCCeeEEEeecchhhHHHHHHHHHcC-CCHHHHHH
Confidence 644421 1123344579999999863 33333344444 344442211 002345666666666443 58999999
Q ss_pred HHHHHHHHHHHHh
Q 012314 424 ALELKEKAMSSVR 436 (466)
Q Consensus 424 a~~~~~~~~~~~~ 436 (466)
..++++...+.+.
T Consensus 141 l~~~r~~~~~~V~ 153 (162)
T COG0041 141 LAEFREAQTEEVL 153 (162)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887543
No 237
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=71.74 E-value=48 Score=28.81 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=23.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCc
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDY 41 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rG--h~Vt~~~~~~ 41 (466)
+||++++.+..+-+ .++.+++.+.+ +.|.++.+..
T Consensus 2 ~ki~vl~sg~gs~~---~~ll~~~~~~~~~~~I~~vvs~~ 38 (200)
T PRK05647 2 KRIVVLASGNGSNL---QAIIDACAAGQLPAEIVAVISDR 38 (200)
T ss_pred ceEEEEEcCCChhH---HHHHHHHHcCCCCcEEEEEEecC
Confidence 67999997765444 46666777654 7888765553
No 238
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.55 E-value=18 Score=35.07 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=37.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
..|+++-.=|.|-..-+-.||..|.++|+.|.+++.+-+.......
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQ 146 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQ 146 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHH
Confidence 3566666778899999999999999999999999998776654443
No 239
>PRK08760 replicative DNA helicase; Provisional
Probab=71.54 E-value=23 Score=35.47 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~~~~~~~ 48 (466)
+++...|+.|=..-++.+|...+. .|+.|.|++..-....+..
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~ 275 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAM 275 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHH
Confidence 566678888999999999998874 5999999998765554433
No 240
>PRK08116 hypothetical protein; Validated
Probab=71.18 E-value=41 Score=30.81 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=27.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (466)
++|...+|.|=..=+.+++++|.++|+.|.+++.+.....+
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 56666666665555667888888888888877754433333
No 241
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=70.38 E-value=58 Score=26.62 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
+.+.-.+|.|=...+..++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 567777788999999999999999999999988764
No 242
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.18 E-value=50 Score=31.04 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=38.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
-|+|+-..|.|-..-.-.||..|.+.|+.|.++..+-+......+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQ 185 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQ 185 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHH
Confidence 567777889999999999999999999999999998777655443
No 243
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=69.54 E-value=17 Score=30.37 Aligned_cols=108 Identities=22% Similarity=0.190 Sum_probs=56.9
Q ss_pred EEEEcCCCccCHHH----HHHHHHHHHhC-CCEEEEEeCCc---chHHHHHhhhcCCCCCCCe-EEEecCCCCCCCCCCc
Q 012314 6 VLVMPAPAQGHVIP----LLEFSQCLAKH-GFRVTFVNTDY---NHKRVVESLQGKNYLGEQI-HLVSIPDGMEPWEDRN 76 (466)
Q Consensus 6 il~~~~~~~GH~~p----~l~la~~L~~r-Gh~Vt~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 76 (466)
|+++.-...|.+++ ++..|++|++. |.+|+.++... ..+.++..... .+. +.+.+++..-. ..
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~-----~G~d~v~~~~~~~~~---~~ 73 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAK-----YGADKVYHIDDPALA---EY 73 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHS-----TTESEEEEEE-GGGT---TC
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhh-----cCCcEEEEecCcccc---cc
Confidence 45555444555554 78889999974 78888887763 22222221100 133 23333211000 00
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch---hHHHHHHHcCCceEEec
Q 012314 77 DLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG---WSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~---~~~~~A~~lgiP~v~~~ 135 (466)
+. ......+.++++. .+||+|++-.... .+..+|.++|.|++.-.
T Consensus 74 ~~--------~~~a~~l~~~~~~------~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 74 DP--------EAYADALAELIKE------EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp -H--------HHHHHHHHHHHHH------HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred CH--------HHHHHHHHHHHHh------cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceE
Confidence 11 1122234555555 5799999887544 67789999999999754
No 244
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=69.54 E-value=40 Score=33.24 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=22.9
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCceEEec
Q 012314 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~ 135 (466)
.+||++|.... ...+|+++|||.+.+.
T Consensus 354 ~~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 354 FEPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 68999998853 5678999999999965
No 245
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=69.39 E-value=38 Score=26.26 Aligned_cols=87 Identities=23% Similarity=0.153 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHH
Q 012314 16 HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEE 95 (466)
Q Consensus 16 H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (466)
+-.-+..+++.|.+.|+.|. ++....+.+.+. ++....+......... -.+.+.+
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~~~~~~~~--------------~~~~i~~ 65 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAWPSEEPQN--------------DKPSLRE 65 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeeeccCCCCC--------------CchhHHH
Confidence 44558899999999998883 555666666654 3433332111000000 0144556
Q ss_pred HHHHHhcCCCCCccEEEeCCC---------chhHHHHHHHcCCceEE
Q 012314 96 LIEEINSREDEKIDCFIADGN---------IGWSMEIAKKMNVRGAV 133 (466)
Q Consensus 96 ll~~l~~~~~~~~DlvV~D~~---------~~~~~~~A~~lgiP~v~ 133 (466)
+++. .++|+||..+. .+.-...|-.+|||++.
T Consensus 66 ~i~~------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 66 LLAE------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHHc------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 6665 78999998643 12345678889999974
No 246
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=69.36 E-value=24 Score=26.67 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=20.4
Q ss_pred CCccEEEeCCCch---hHHHHHHHcCCceEE
Q 012314 106 EKIDCFIADGNIG---WSMEIAKKMNVRGAV 133 (466)
Q Consensus 106 ~~~DlvV~D~~~~---~~~~~A~~lgiP~v~ 133 (466)
.++|++|+.+-.+ ...+..+..|||++.
T Consensus 61 ~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 61 NKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp TTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred cCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 7899999998655 445566777999875
No 247
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=69.13 E-value=48 Score=29.17 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=24.8
Q ss_pred CCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 11 APAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 11 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
..+.|-..-.+.|++.|.++|++|.++-+
T Consensus 8 ~t~~GKT~vs~~L~~~l~~~g~~v~~~KP 36 (222)
T PRK00090 8 DTDVGKTVVTAALAQALREAGYSVAGYKP 36 (222)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCceEEEee
Confidence 34559999999999999999999988764
No 248
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=68.71 E-value=49 Score=25.33 Aligned_cols=84 Identities=18% Similarity=0.106 Sum_probs=54.2
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHH
Q 012314 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLE 94 (466)
Q Consensus 15 GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (466)
++-.-++.+++.|.+.|+++. +++.....+.+. ++....+.... . ..+.+.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~~~-~-----------------~~~~i~ 60 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNKVS-E-----------------GRPNIV 60 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEeecC-C-----------------CchhHH
Confidence 355678899999999999883 454566666664 45543332110 0 223455
Q ss_pred HHHHHHhcCCCCCccEEEeCCC-------chhHHHHHHHcCCceEE
Q 012314 95 ELIEEINSREDEKIDCFIADGN-------IGWSMEIAKKMNVRGAV 133 (466)
Q Consensus 95 ~ll~~l~~~~~~~~DlvV~D~~-------~~~~~~~A~~lgiP~v~ 133 (466)
++++. .++|+||..+. .+.-...|-..|||++.
T Consensus 61 ~~i~~------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 61 DLIKN------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHc------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 55555 78999998542 23455678889999985
No 249
>PRK08840 replicative DNA helicase; Provisional
Probab=67.92 E-value=44 Score=33.38 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=68.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEK 84 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
+++...|+.|=..-++.+|...+ +.|+.|.|++..-....+.....+. ..++....+..+.-..+...........
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~---~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 296 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLAS---LSRVDQTKIRTGQLDDEDWARISSTMGI 296 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHh---hCCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 56667888899999999999987 4699999999876555543332111 1123222222111000111111112222
Q ss_pred HHHh-----------ccHHHHHHHHHHhcCCCCCccEEEeCCCchh-------------------HHHHHHHcCCceEEe
Q 012314 85 CLQV-----------MPGKLEELIEEINSREDEKIDCFIADGNIGW-------------------SMEIAKKMNVRGAVF 134 (466)
Q Consensus 85 ~~~~-----------~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~-------------------~~~~A~~lgiP~v~~ 134 (466)
+... ....++..++++.... .+.|+||+|++... .-.+|+.++||++.+
T Consensus 297 l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~-~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~L 375 (464)
T PRK08840 297 LMEKKNMYIDDSSGLTPTEVRSRARRIAREH-GGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVAL 375 (464)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHHHhc-CCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 2111 1234455555544321 24799999985321 114788899999997
Q ss_pred c
Q 012314 135 W 135 (466)
Q Consensus 135 ~ 135 (466)
+
T Consensus 376 s 376 (464)
T PRK08840 376 S 376 (464)
T ss_pred E
Confidence 6
No 250
>PRK05595 replicative DNA helicase; Provisional
Probab=67.86 E-value=27 Score=34.66 Aligned_cols=43 Identities=16% Similarity=0.348 Sum_probs=33.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~~ 48 (466)
+++...|+.|=..-++.+|..++ +.|+.|.|++..-....+..
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~ 247 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAY 247 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHH
Confidence 45566788899999999998876 57999999999765554433
No 251
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=67.23 E-value=78 Score=26.88 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=52.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCE--EEEEeCC-cchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFR--VTFVNTD-YNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK 80 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~--Vt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
|||+|+..+.. ..+..+.++|.+++|. |.++.+. +.......... .++....+....
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~------~~~~~~~~~~~~----------- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK------NGIPAQVADEKN----------- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH------TTHHEEEHHGGG-----------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc------CCCCEEeccccC-----------
Confidence 57888875555 4466778899999997 4444443 33222221110 122222211100
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch-hHHHHHHHcCCceEEeccc
Q 012314 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG-WSMEIAKKMNVRGAVFWPS 137 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~-~~~~~A~~lgiP~v~~~~~ 137 (466)
+.. .....+.+.+.++. .+||++|+-.+.. ....+-+.....++-++++
T Consensus 61 -~~~-~~~~~~~~~~~l~~------~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 -FQP-RSENDEELLELLES------LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp -SSS-HHHHHHHHHHHHHH------TT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred -CCc-hHhhhhHHHHHHHh------hccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 000 01112334444444 7899998876533 4555667677777776643
No 252
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=67.10 E-value=60 Score=31.94 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=23.4
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCceEEecc
Q 012314 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~ 136 (466)
.+||++|... .+..+|+++|||.+.+..
T Consensus 349 ~~pDl~Ig~s---~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 349 YRPDLAIGTT---PLVQYAKEKGIPALYYTN 376 (416)
T ss_pred cCCCEEEeCC---hhhHHHHHhCCCEEEecC
Confidence 6899999884 367799999999998653
No 253
>PRK08939 primosomal protein DnaI; Reviewed
Probab=66.94 E-value=21 Score=33.48 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=34.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (466)
.+++...+|.|=.+=+.+||.+|.++|..|+|+..+.....+.
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk 200 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK 200 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH
Confidence 5777777777777778899999999999999998875544443
No 254
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.90 E-value=52 Score=32.68 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
+.++++++. .|. .-+ ++|+.|+++|++|+++....
T Consensus 4 ~~k~v~iiG---~g~-~G~-~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVG---AGV-SGL-ALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEEC---CCH-HHH-HHHHHHHHCCCEEEEEeCCc
Confidence 455666653 333 333 99999999999999987754
No 255
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=66.87 E-value=19 Score=35.53 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 43 (466)
++|||++-.+++-| +|+.+|++.++-..+++.+.+.
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~ 39 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNG 39 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCch
Confidence 47999999888877 5799999988665666655554
No 256
>PRK11823 DNA repair protein RadA; Provisional
Probab=66.53 E-value=66 Score=31.99 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=34.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (466)
-+++.-.++.|=..=++.++..++++|++|.+++.....+.+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 3556667788999999999999998999999999876665553
No 257
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=66.31 E-value=83 Score=33.35 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=29.0
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 5 RVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 5 ~il~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
.+++.+.. +.|=..-.+.|++.|.++|.+|-++=+.
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi 40 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPI 40 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCc
Confidence 45555444 4599999999999999999999998763
No 258
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=65.87 E-value=39 Score=30.14 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=24.9
Q ss_pred CCccEEE-eCCCch-hHHHHHHHcCCceEEeccchh
Q 012314 106 EKIDCFI-ADGNIG-WSMEIAKKMNVRGAVFWPSSA 139 (466)
Q Consensus 106 ~~~DlvV-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 139 (466)
.-||+++ .|+..- -|..=|.++|||+|.++-..+
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 3488776 566433 788899999999999864443
No 259
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=65.83 E-value=72 Score=29.27 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=32.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 43 (466)
.++|+..+|-|=..-...||..|++.|++|.++..+.+.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 455555667799999999999999999999999988643
No 260
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=65.78 E-value=47 Score=29.62 Aligned_cols=43 Identities=19% Similarity=0.437 Sum_probs=33.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~~~ 48 (466)
+++...++.|=..-++.++..++.. |+.|.+++.......+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 4455567778888889998888877 999999999876655544
No 261
>PRK07952 DNA replication protein DnaC; Validated
Probab=65.73 E-value=28 Score=31.35 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=29.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (466)
.+++...+|.|=..=+.+||.+|.++|+.|.+++.......+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence 356666667777777788899998889999888664443333
No 262
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=65.65 E-value=66 Score=31.38 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=35.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 43 (466)
..|+|+-.+|.|=..-+..||..|..+|++|.+++.+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4677777778899999999999999999999999998765
No 263
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=65.58 E-value=53 Score=27.25 Aligned_cols=109 Identities=19% Similarity=0.156 Sum_probs=58.0
Q ss_pred EcCCCccCHHH-HHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCC--CCCC--------cc
Q 012314 9 MPAPAQGHVIP-LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEP--WEDR--------ND 77 (466)
Q Consensus 9 ~~~~~~GH~~p-~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~ 77 (466)
+.....+.+.. +-.+|++|..+|++|-=+........-.. ...+....++.+..- .++. -+
T Consensus 4 v~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~--------~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD 75 (159)
T PF10649_consen 4 VVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGG--------RCDMDLRDLPSGRRIRISQDLGPGSRGCRLD 75 (159)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCC--------ccceEEEECCCCCEEEEeeccCCCCcccccC
Confidence 33444566665 55789999999999987776432221111 135666665533211 1100 01
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch---------hHHHHHHHcCCceEEeccc
Q 012314 78 LGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG---------WSMEIAKKMNVRGAVFWPS 137 (466)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~---------~~~~~A~~lgiP~v~~~~~ 137 (466)
...+-+ ....++..++ .++|++|..-|.- .....|-..|||+++..+.
T Consensus 76 ~~~La~-----A~~~l~~al~-------~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 76 PGALAE-----ASAALRRALA-------EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred HHHHHH-----HHHHHHHHHh-------cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 111111 1112233332 4799999998732 2344566779999986653
No 264
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=65.08 E-value=1.6e+02 Score=29.68 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=67.6
Q ss_pred eecccchhh---hhcCCCccccee--ccCCchh-hhhhhcCc----ceeecccccchhhhHHHHHHhhhceeEeecCCCC
Q 012314 331 MISWAPQLR---VLNHPSIACFLS--HCGWNST-MEGVSNGI----PFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGG 400 (466)
Q Consensus 331 ~~~~~p~~~---ll~~~~~~~~i~--hgG~~s~-~eal~~Gv----P~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 400 (466)
+.+.+|+.+ ++..++| ++|| .-|+|-| .|.++++. |+|.--+.+ |. ++ +.-++.++|
T Consensus 366 ~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~-l~~AllVNP---- 432 (487)
T TIGR02398 366 FTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VE-LKGALLTNP---- 432 (487)
T ss_pred EcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hh-cCCCEEECC----
Confidence 447778665 5666777 2344 6699877 69999987 555543221 11 33 566788855
Q ss_pred CcCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012314 401 IITREEIKNKVDQVLGNQ--DFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKT 454 (466)
Q Consensus 401 ~~~~~~l~~~i~~ll~~~--~~r~~a~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~ 454 (466)
.+.++++++|.++|+.+ +=++|.+++.+.++. -+...=.+.++..+..
T Consensus 433 -~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 -YDPVRMDETIYVALAMPKAEQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred -CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 68999999999999865 455566666666654 2444445556655544
No 265
>PRK06321 replicative DNA helicase; Provisional
Probab=65.01 E-value=50 Score=33.09 Aligned_cols=43 Identities=12% Similarity=0.316 Sum_probs=33.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~~ 48 (466)
+++...|+.|=..-++.+|...+ +.|..|.|++..-....+..
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~ 272 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIH 272 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 56667888899999999999987 45899999998765555443
No 266
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=64.94 E-value=86 Score=31.60 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=38.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
-+++.-.||.|=..=.+.++.+.+++|.+|.+++.....+.+...
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 466777888899999999999999999999999998877766554
No 267
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=64.90 E-value=9.9 Score=32.47 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=33.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (466)
+||++...++.|=+. ...+.++|.++|++|.++.++.....+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 457776666655554 8999999999999999999987666554
No 268
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=64.67 E-value=41 Score=31.82 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=57.0
Q ss_pred CEEEEEcCCCcc-----CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccH
Q 012314 4 PRVLVMPAPAQG-----HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (466)
Q Consensus 4 ~~il~~~~~~~G-----H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (466)
.-|++.|..+.| ...-+.+|++.|.++|++|.+++++...+........ .+-..+.+.
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~-----~~~~~~~l~------------ 237 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEAL-----LPGELRNLA------------ 237 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHh-----CCcccccCC------------
Confidence 345565544333 1235889999999889999998887555443322100 000000000
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEecc
Q 012314 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~ 136 (466)
....+.++...++ +-|++|+.- .....+|..+|+|+|.+..
T Consensus 238 ----------g~~sL~el~ali~-----~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 238 ----------GETSLDEAVDLIA-----LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred ----------CCCCHHHHHHHHH-----hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 0112344444442 369999874 4578899999999997653
No 269
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=64.61 E-value=1.1e+02 Score=31.64 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=49.1
Q ss_pred ccceeccCCchhhhhh---hcCcceeeccccc---chhhhHHHHHHhh--hc--eeEeecCCCCCcCHHHHHHHHHHHhc
Q 012314 347 ACFLSHCGWNSTMEGV---SNGIPFLCWPYFG---DQFLNERYICDFW--KV--GLKFDRDEGGIITREEIKNKVDQVLG 416 (466)
Q Consensus 347 ~~~i~hgG~~s~~eal---~~GvP~l~~P~~~---DQ~~~a~rv~~~~--G~--G~~l~~~~~~~~~~~~l~~~i~~ll~ 416 (466)
+++|.=.|.-.-+-.+ ..-+|+|.+|... +-.+--.-+.+ + |+ +.+-- .+..++..++..|-. +.
T Consensus 467 ~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~i---~~~~~aa~~a~~i~~-~~ 541 (577)
T PLN02948 467 QVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVAI---GNATNAGLLAVRMLG-AS 541 (577)
T ss_pred CEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEec---CChHHHHHHHHHHHh-cC
Confidence 3488877654333332 2358999999853 33333233333 4 53 22221 245566666655533 35
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 012314 417 NQDFKARALELKEKAMSSVR 436 (466)
Q Consensus 417 ~~~~r~~a~~~~~~~~~~~~ 436 (466)
|++++++.+..++.+++.+.
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~ 561 (577)
T PLN02948 542 DPDLLDKMEAYQEDMRDMVL 561 (577)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 78999999999888887533
No 270
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=64.44 E-value=1e+02 Score=29.31 Aligned_cols=102 Identities=17% Similarity=0.196 Sum_probs=56.5
Q ss_pred EEEEEcCCCcc---C--HHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHH
Q 012314 5 RVLVMPAPAQG---H--VIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLG 79 (466)
Q Consensus 5 ~il~~~~~~~G---H--~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (466)
-|+|.|..+.| + ..-+.+|++.|.++|++|.++..+...+........ ......-+...+.
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~-~~~~~~~~~~~l~------------- 247 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAA-LNTEQQAWCRNLA------------- 247 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHh-cccccccceeecc-------------
Confidence 45666643222 1 224789999999889999998876554443332100 0000000001100
Q ss_pred HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEecc
Q 012314 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~ 136 (466)
..-.+.++...+ .+-|++|+.- .....+|..+|+|+|.+..
T Consensus 248 ---------g~~sL~el~ali-----~~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 248 ---------GETQLEQAVILI-----AACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred ---------CCCCHHHHHHHH-----HhCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 011244444444 2369999874 4578899999999998753
No 271
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=64.22 E-value=7.9 Score=33.16 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCc
Q 012314 20 LLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
-.+||+++..+||+|+++..+.
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHHCCCEEEEEecCc
Confidence 3688999999999999999974
No 272
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=64.17 E-value=15 Score=34.15 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCCCc-cC---HHHHHHHHHHHHhCCCEEEEEeC
Q 012314 1 MSRPRVLVMPAPAQ-GH---VIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 1 m~~~~il~~~~~~~-GH---~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
|+|+||+++..+.. =| +....+++++|.+.||+|.++..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 89999999996544 22 34577899999999999988754
No 273
>PRK06988 putative formyltransferase; Provisional
Probab=64.17 E-value=66 Score=30.23 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
=++||+|+..+. -.+...++|.++||+|..+.+.
T Consensus 1 ~~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 1 MKPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CCcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 047899986443 2355667788889998877775
No 274
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=64.01 E-value=69 Score=29.55 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=31.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-C-CEEEEEeCCcchH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKH-G-FRVTFVNTDYNHK 44 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~r-G-h~Vt~~~~~~~~~ 44 (466)
.|+|+-..|.|=..-...||..++.+ | +.|.+++.+.+..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 45555556669999999999999976 5 9999999987643
No 275
>PRK07004 replicative DNA helicase; Provisional
Probab=63.96 E-value=49 Score=33.03 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=33.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~~ 48 (466)
+++...|+.|=..-++.+|..++ +.|+.|.|++..-....+..
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~ 259 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAM 259 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHH
Confidence 55666788899999999998886 56999999998765555443
No 276
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=63.87 E-value=56 Score=27.55 Aligned_cols=102 Identities=20% Similarity=0.120 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc---hHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHH
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN---HKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLG 79 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (466)
+-.|-+++..+.|=....+.+|-+-+.+|.+|.++-.-.. ....... ...+++++.....++..... ...
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l-----~~l~~~~~~~~g~~f~~~~~--~~~ 75 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKAL-----KKLPNVEIERFGKGFVWRMN--EEE 75 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHH-----GGGT--EEEE--TT----GG--GHH
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHH-----HhCCeEEEEEcCCcccccCC--CcH
Confidence 3457889999999999888888777788888888765332 1111110 11246777776654333211 111
Q ss_pred HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch
Q 012314 80 KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (466)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~ 118 (466)
.- .......++...+.+.+ .++|+||.|....
T Consensus 76 ~~----~~~~~~~~~~a~~~i~~---~~~dlvILDEi~~ 107 (172)
T PF02572_consen 76 ED----RAAAREGLEEAKEAISS---GEYDLVILDEINY 107 (172)
T ss_dssp HH----HHHHHHHHHHHHHHTT----TT-SEEEEETHHH
T ss_pred HH----HHHHHHHHHHHHHHHhC---CCCCEEEEcchHH
Confidence 11 22233445445555444 7899999998533
No 277
>PRK14974 cell division protein FtsY; Provisional
Probab=63.87 E-value=80 Score=30.02 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=34.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (466)
..|+|+-.+|.|=..-...+|..|.++|++|.+++.+.+..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 35667777888999999999999999999999988875433
No 278
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=63.72 E-value=71 Score=27.01 Aligned_cols=114 Identities=17% Similarity=0.224 Sum_probs=62.8
Q ss_pred cCHHHHHHHHHHH-HhCCCEEEEEeCCcchHHHHHhh------------------hcCCCCCCCeEEEecCCCCCCCCCC
Q 012314 15 GHVIPLLEFSQCL-AKHGFRVTFVNTDYNHKRVVESL------------------QGKNYLGEQIHLVSIPDGMEPWEDR 75 (466)
Q Consensus 15 GH~~p~l~la~~L-~~rGh~Vt~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (466)
+.+.-.+..|++| .+.|.+|.+.-. .....+++.. .........+-++.++.. .
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~------~ 89 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNI------I 89 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-------S
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccc------c
Confidence 5666778889998 788898877665 3444444432 001112223333333221 1
Q ss_pred ccHHHHHHHHHHh--------ccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccchhHHH
Q 012314 76 NDLGKLIEKCLQV--------MPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASV 142 (466)
Q Consensus 76 ~~~~~~~~~~~~~--------~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 142 (466)
.....+.+.+ .. ....++..++.++. .+.|+||.+.. +..+|+++|+|++.+.++..+-.
T Consensus 90 ~~~~~~~~ll-~~~i~~~~~~~~~e~~~~i~~~~~---~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~esi~ 157 (176)
T PF06506_consen 90 PGLESIEELL-GVDIKIYPYDSEEEIEAAIKQAKA---EGVDVIVGGGV---VCRLARKLGLPGVLIESGEESIR 157 (176)
T ss_dssp CCHHHHHHHH-T-EEEEEEESSHHHHHHHHHHHHH---TT--EEEESHH---HHHHHHHTTSEEEESS--HHHHH
T ss_pred HHHHHHHHHh-CCceEEEEECCHHHHHHHHHHHHH---cCCcEEECCHH---HHHHHHHcCCcEEEEEecHHHHH
Confidence 2223333333 11 15567788888777 67999999963 57899999999999877555433
No 279
>PRK05920 aromatic acid decarboxylase; Validated
Probab=63.29 E-value=13 Score=32.44 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=33.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
+||++.-.++ ...+-...+.++|.+.||+|.++.+......+..
T Consensus 4 krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 4 KRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 4566555444 4446799999999999999999999877666643
No 280
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=63.25 E-value=1.2e+02 Score=27.66 Aligned_cols=37 Identities=8% Similarity=0.245 Sum_probs=28.3
Q ss_pred CEEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 4 PRVLVMPAP--AQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 4 ~~il~~~~~--~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
.|++.++.+ +-|=..-...||..|++.|++|.++=.+
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 455555544 4477777889999999999999998654
No 281
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=63.18 E-value=64 Score=31.92 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.2
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCceEEec
Q 012314 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~ 135 (466)
.+||++|.+.. ...+|+++|||++.+.
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 78999999974 5789999999999764
No 282
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=63.17 E-value=89 Score=26.07 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=23.0
Q ss_pred cCCCcccceeccCCc------hhhhhhhcCcceeecc
Q 012314 342 NHPSIACFLSHCGWN------STMEGVSNGIPFLCWP 372 (466)
Q Consensus 342 ~~~~~~~~i~hgG~~------s~~eal~~GvP~l~~P 372 (466)
+.+.+ +++|.|.| .+.+|...++|+|++.
T Consensus 62 g~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 62 GKLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 33444 88888865 6789999999999996
No 283
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=62.96 E-value=14 Score=31.51 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=34.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~~~~~~~ 48 (466)
+||++.-.|+.+ .+-...++++|.+ .||+|.++.++.....+..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 356666666656 6669999999999 5999999999887776654
No 284
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.85 E-value=10 Score=34.62 Aligned_cols=52 Identities=12% Similarity=0.041 Sum_probs=37.2
Q ss_pred cccceeccCCchhhhhhh------cCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcC
Q 012314 346 IACFLSHCGWNSTMEGVS------NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 417 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~------~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 417 (466)
++++|+-||-||++.|+. .++|++.+-. - .+|-. ..++++++.+.+++++++
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~-------------G-~lGFL------~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT-------------G-HLGFY------TDWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC-------------C-Cceec------ccCCHHHHHHHHHHHHcC
Confidence 344999999999999976 4889988831 0 12222 345678888888888864
No 285
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=62.74 E-value=82 Score=29.03 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=33.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
..++|+++-.+.-|. .+|+.|+++||.|.++..+...+.....
T Consensus 2 ~~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 2 ASMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CCcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 456788887776665 4699999999999999999887766554
No 286
>PRK12377 putative replication protein; Provisional
Probab=62.48 E-value=42 Score=30.31 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=29.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (466)
.++|.-.+|.|=..=+.+||++|.+.|+.|.+++.+.....+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 466666667766666788888888888888777775444433
No 287
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=62.11 E-value=25 Score=30.01 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=51.3
Q ss_pred hCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCc
Q 012314 29 KHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKI 108 (466)
Q Consensus 29 ~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 108 (466)
..|+++++++.++....+.+. -++++...+..++......+.....+...........+++++|.+..+..+
T Consensus 7 ~~~~riiL~S~s~rrk~i~~~--------~G~~~~~~~S~feEnl~k~~~~~p~~yv~~tA~~KA~~I~erL~~~Ed~~~ 78 (209)
T KOG1509|consen 7 LKGKRIILASASPRRKQILAE--------MGLNLEVVVSTFEENLIKSSFETPEDYVVETAKQKAEEIIERLGDGEDSFP 78 (209)
T ss_pred hcCcEEEEecCCchHHHHHHH--------cCCceEEEeccchhhchhhccCCHHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence 468999999998887777666 367888777776666333333333444444456677888999886543446
Q ss_pred cEEEeC
Q 012314 109 DCFIAD 114 (466)
Q Consensus 109 DlvV~D 114 (466)
|++|+-
T Consensus 79 ~~vi~a 84 (209)
T KOG1509|consen 79 DVVISA 84 (209)
T ss_pred cccccc
Confidence 666543
No 288
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=62.09 E-value=1.3e+02 Score=27.78 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCC--CCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHH-H
Q 012314 18 IPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKN--YLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKL-E 94 (466)
Q Consensus 18 ~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 94 (466)
.+.+.+++.|++.|++|.++..+.............. ....+.+.+-+|-....++.. .........-.+ +
T Consensus 11 ~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~------i~~~~~~~~~~l~~ 84 (287)
T TIGR02853 11 ARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGK------VATVFSNEKVVLTP 84 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCce------EecccccCCccccH
Confidence 3578999999999999999988632111100000000 001334444444221111100 011111111122 4
Q ss_pred HHHHHHhcCCCCCccEEEeCCCchhHHH-HHHHcCCceEEe
Q 012314 95 ELIEEINSREDEKIDCFIADGNIGWSME-IAKKMNVRGAVF 134 (466)
Q Consensus 95 ~ll~~l~~~~~~~~DlvV~D~~~~~~~~-~A~~lgiP~v~~ 134 (466)
++++. .++.+++.......-.. .|+..||+++-+
T Consensus 85 ~~l~~------~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~ 119 (287)
T TIGR02853 85 ELLES------TKGHCTIYVGISNPYLEQLAADAGVKLIEL 119 (287)
T ss_pred HHHHh------cCCCCEEEEecCCHHHHHHHHHCCCeEEEE
Confidence 56666 34566666655555555 999999999863
No 289
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=61.81 E-value=35 Score=28.49 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=27.6
Q ss_pred CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012314 11 APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (466)
Q Consensus 11 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 43 (466)
-||.|=..-...||..|+++|++|.++=.+...
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 456688888999999999999999999776543
No 290
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=61.78 E-value=37 Score=31.96 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=25.1
Q ss_pred CCccEEEe-CCCc-hhHHHHHHHcCCceEEeccchh
Q 012314 106 EKIDCFIA-DGNI-GWSMEIAKKMNVRGAVFWPSSA 139 (466)
Q Consensus 106 ~~~DlvV~-D~~~-~~~~~~A~~lgiP~v~~~~~~~ 139 (466)
..||+||+ |... ..+..=|.++|||+|.++-+.+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 46898875 4432 2788899999999999864443
No 291
>PRK06904 replicative DNA helicase; Validated
Probab=61.46 E-value=59 Score=32.59 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=33.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~~~~~~~ 48 (466)
+++...|+.|=..-++.+|...+. .|+.|.|++..-....+..
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~ 267 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMM 267 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 556668888999999999998875 5999999999865555443
No 292
>PLN02470 acetolactate synthase
Probab=61.33 E-value=35 Score=35.32 Aligned_cols=90 Identities=9% Similarity=0.060 Sum_probs=52.2
Q ss_pred Eeccccc--cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeeccc--------c--hhhhhc
Q 012314 275 SFGSFTI--LDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWA--------P--QLRVLN 342 (466)
Q Consensus 275 s~Gs~~~--~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~--------p--~~~ll~ 342 (466)
+|||... ......+.+++.|.+.|.+.|+-+.++ ....+-+.+.+ .++++.+.-. - +..+-+
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~----~~~~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~tg 75 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGG----ASMEIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKASG 75 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCc----ccHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHhC
Confidence 4565522 223346778888999999999888766 11122222210 1233332111 1 111222
Q ss_pred CCCcccceeccCCc------hhhhhhhcCcceeecc
Q 012314 343 HPSIACFLSHCGWN------STMEGVSNGIPFLCWP 372 (466)
Q Consensus 343 ~~~~~~~i~hgG~~------s~~eal~~GvP~l~~P 372 (466)
.+.++++|.|.| .+.+|.+.++|+|++.
T Consensus 76 --~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 --KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred --CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 344588998865 6789999999999995
No 293
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=60.75 E-value=12 Score=31.96 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=32.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (466)
||++.-.|+.|=+.-...+.++|.+.|++|+++.+.....
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 5777766777777766799999999999999999876543
No 294
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=60.50 E-value=1.1e+02 Score=26.22 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=34.6
Q ss_pred CEEEEEc---CCC-ccCH-HHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecC
Q 012314 4 PRVLVMP---APA-QGHV-IPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP 66 (466)
Q Consensus 4 ~~il~~~---~~~-~GH~-~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (466)
.||+++. .|+ +|=+ .-.-.|+..|+++||+||+.+.......-.. .-.+++...+|
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~-------~y~gv~l~~i~ 62 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEF-------EYNGVRLVYIP 62 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCc-------ccCCeEEEEeC
Confidence 3466665 233 2333 3455678888899999999999755432211 12477777776
No 295
>PRK05636 replicative DNA helicase; Provisional
Probab=60.38 E-value=29 Score=35.09 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=31.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVV 47 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~ 47 (466)
+++...|+.|=..-++.+|...+ +.|..|.|++..-....+.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~ 310 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIV 310 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHH
Confidence 45666788888888889988776 4688999998875554443
No 296
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=60.03 E-value=55 Score=29.58 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=52.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
|||+++..-+-| ..|++.|.++|+ |.+-+.-.+...+.... ........ .++.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~------~~~~~v~~--G~lg------------- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPE------LPGLEVRV--GRLG------------- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccc------cCCceEEE--CCCC-------------
Confidence 466666533333 578999999998 65555444444442210 01122221 0000
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch------hHHHHHHHcCCceEEec
Q 012314 84 KCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG------WSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~------~~~~~A~~lgiP~v~~~ 135 (466)
....+.++++. .++|+||==.+.+ -+..+|+.+|||++.+-
T Consensus 54 -----~~~~l~~~l~~------~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 54 -----DEEGLAEFLRE------NGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred -----CHHHHHHHHHh------CCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 13345556665 7889887333322 24568899999999975
No 297
>PRK10867 signal recognition particle protein; Provisional
Probab=59.83 E-value=47 Score=32.80 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=34.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcchHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYNHKRV 46 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~ 46 (466)
.|+++..+|.|=..-...||..|+++ |+.|.+++.+.+....
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 45555566779999999999999999 9999999998766544
No 298
>PRK00784 cobyric acid synthase; Provisional
Probab=59.41 E-value=1.4e+02 Score=30.23 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=26.9
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 6 VLVMPA-PAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 6 il~~~~-~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
+++... .+.|=..-...|++.|+++|++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 444433 3459999999999999999999987765
No 299
>PRK06749 replicative DNA helicase; Provisional
Probab=59.24 E-value=69 Score=31.67 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=35.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
+++..-|+.|=..-++.+|...+..|+.|.|++..-....+...
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~~R 232 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLKR 232 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHH
Confidence 56667888899999999999999999999999887655554433
No 300
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.11 E-value=33 Score=31.87 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=38.0
Q ss_pred ccceeccCCchhhhhhh----cCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 347 ACFLSHCGWNSTMEGVS----NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 347 ~~~i~hgG~~s~~eal~----~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
+.+|+=||-||+++++. .++|++.+... .+| .+ ..++.+++.++|+++++++
T Consensus 64 d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lG-Fl-----~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 64 DLVIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLG-FL-----TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccc-cc-----ccCCHHHHHHHHHHHHcCC
Confidence 44999999999999865 37788887431 223 22 3467899999999998643
No 301
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=58.98 E-value=17 Score=35.39 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
|+++||++...++. ..+-...+.++|.++|++|.++.++.....+..
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 45677887776655 455689999999999999999999877666543
No 302
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=58.78 E-value=1.4e+02 Score=28.27 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=58.1
Q ss_pred CEEEEEcCCCc-c----CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccH
Q 012314 4 PRVLVMPAPAQ-G----HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (466)
Q Consensus 4 ~~il~~~~~~~-G----H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (466)
..|+|.|..+. . -..-+..|++.|.++|.+|.++.++...+....... ....... +.
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~-------~~~~~~~---l~-------- 237 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK-------GLPNAVI---LA-------- 237 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH-------hcCCccc---cC--------
Confidence 46777776232 1 234589999999999999999988743333322210 0000000 00
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEecc
Q 012314 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~ 136 (466)
....+.++...+ ..-|++|+.- .....+|..+|+|+|.+..
T Consensus 238 ----------~k~sL~e~~~li-----~~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 238 ----------GKTSLEELAALI-----AGADLVIGND--SGPMHLAAALGTPTIALYG 278 (334)
T ss_pred ----------CCCCHHHHHHHH-----hcCCEEEccC--ChHHHHHHHcCCCEEEEEC
Confidence 112234444443 2368888763 4578899999999998764
No 303
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=58.24 E-value=17 Score=34.08 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
|.++||+++-.++.|= .+|..|++.||+|+++.... .+.+..
T Consensus 3 ~~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~-~~~~~~ 44 (313)
T PRK06249 3 SETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD-YEAVRE 44 (313)
T ss_pred CcCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC-HHHHHh
Confidence 5678999997776663 45788999999999999865 344443
No 304
>PRK07206 hypothetical protein; Provisional
Probab=58.18 E-value=55 Score=32.10 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=23.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 42 (466)
+++++-.... ...++++++++|+++.+++....
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~~ 36 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSCL 36 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCCC
Confidence 4666664322 34689999999999999887643
No 305
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=57.63 E-value=79 Score=31.35 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=33.4
Q ss_pred CEEEEEcCC---CccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012314 4 PRVLVMPAP---AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (466)
Q Consensus 4 ~~il~~~~~---~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (466)
+|.+|++.+ +-|-=....+|++-|..||++||..--+++.+
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlN 44 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLN 44 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEeccccee
Confidence 367788865 44666778999999999999999999988755
No 306
>PRK11519 tyrosine kinase; Provisional
Probab=57.57 E-value=2.1e+02 Score=30.64 Aligned_cols=117 Identities=17% Similarity=0.236 Sum_probs=67.1
Q ss_pred CCEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhh------------cCC--------CCCCCe
Q 012314 3 RPRVLVMPA--PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQ------------GKN--------YLGEQI 60 (466)
Q Consensus 3 ~~~il~~~~--~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~------------~~~--------~~~~~~ 60 (466)
+.|+++++. |+-|=..-...||..|++.|++|.++-.+.....+..... ... ...+++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 346777775 4558888899999999999999999977643332222110 000 011233
Q ss_pred EEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch----hHHHHHHHcCCceEEec
Q 012314 61 HLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG----WSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~----~~~~~A~~lgiP~v~~~ 135 (466)
.+.. .+. ...+..+++ ....+.++++.++ .++|+||.|.-.. -+..++...+...+++-
T Consensus 605 ~~lp--~g~----~~~~~~ell------~s~~~~~ll~~l~----~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr 667 (719)
T PRK11519 605 DLIP--RGQ----VPPNPSELL------MSERFAELVNWAS----KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVAR 667 (719)
T ss_pred EEEe--CCC----CCCCHHHHh------hHHHHHHHHHHHH----hcCCEEEEeCCCcccchHHHHHHHHCCeEEEEEe
Confidence 3322 111 112222222 1335777788776 4799999996322 24556777776655543
No 307
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=57.27 E-value=1.2e+02 Score=25.84 Aligned_cols=114 Identities=6% Similarity=0.049 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecC----------------CCCCCC-CCCccH
Q 012314 17 VIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP----------------DGMEPW-EDRNDL 78 (466)
Q Consensus 17 ~~p~l~la~~L~~-rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~-~~~~~~ 78 (466)
+..+-.+++.+.+ .|.++.+.++....+.++.+ .|-+..+- .++... .+....
T Consensus 41 L~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gA---------DfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~ 111 (183)
T PF02056_consen 41 LEIVERLARRMVEEAGADLKVEATTDRREALEGA---------DFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGP 111 (183)
T ss_dssp HHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTE---------SEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCC---------CEEEEEeeecchHHHHHHHHHHHHhCCccccccccCc
Confidence 4445566666664 46677666666555555332 33333322 122221 234456
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhH---HHHHHHcC-CceEEeccchhHHHHH
Q 012314 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWS---MEIAKKMN-VRGAVFWPSSAASVAL 144 (466)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~---~~~A~~lg-iP~v~~~~~~~~~~~~ 144 (466)
..++..+. .-+.+.++.+.+++ .-||+-+..+..|.+ ..+.+..+ +++|.++.++......
T Consensus 112 GG~~~alR--tipv~~~ia~~i~~---~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~~~~ 176 (183)
T PF02056_consen 112 GGFFRALR--TIPVMLDIARDIEE---LCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQGTRRQ 176 (183)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHH---HTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHHHH
T ss_pred cHHHHHHh--hHHHHHHHHHHHHH---hCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHHHHHH
Confidence 66666664 34556777777766 568999999876633 34555666 9999999987754443
No 308
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=57.14 E-value=67 Score=31.69 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=34.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRV 46 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~ 46 (466)
.++++..+|.|=..-...||..|. ++|++|.+++.+.+....
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a 143 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAA 143 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHH
Confidence 455666778899999999999997 689999999998766543
No 309
>PLN02929 NADH kinase
Probab=57.07 E-value=35 Score=31.73 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=42.3
Q ss_pred cccceeccCCchhhhhhh---cCcceeeccccc------chhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhc
Q 012314 346 IACFLSHCGWNSTMEGVS---NGIPFLCWPYFG------DQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLG 416 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~---~GvP~l~~P~~~------DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~ 416 (466)
++++|+-||-||++.|.. .++|+|++=..- ++..+.-. +.. .+|-.. .++.+++.+.++++++
T Consensus 65 ~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGfL~------~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 65 VDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGHLC------AATAEDFEQVLDDVLF 136 (301)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-ccc-Cccccc------cCCHHHHHHHHHHHHc
Confidence 344999999999998844 478998875431 12222211 111 355554 3568999999999996
Q ss_pred CH
Q 012314 417 NQ 418 (466)
Q Consensus 417 ~~ 418 (466)
+.
T Consensus 137 g~ 138 (301)
T PLN02929 137 GR 138 (301)
T ss_pred CC
Confidence 54
No 310
>PRK09620 hypothetical protein; Provisional
Probab=56.93 E-value=30 Score=30.81 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=27.1
Q ss_pred CCCCEEEEEcCC--------------CccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 1 MSRPRVLVMPAP--------------AQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 1 m~~~~il~~~~~--------------~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|+.++|++-..| +.|.+- ..||++|.++|++|+++...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiG--s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIG--RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHH--HHHHHHHHHCCCeEEEEeCC
Confidence 456666665444 334443 67899999999999999764
No 311
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=56.88 E-value=1.3e+02 Score=28.53 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=54.3
Q ss_pred EEEEEcCCCcc----CHHHHHHHHHHHHhCCCEEEEEeCCcchH--HHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccH
Q 012314 5 RVLVMPAPAQG----HVIPLLEFSQCLAKHGFRVTFVNTDYNHK--RVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (466)
Q Consensus 5 ~il~~~~~~~G----H~~p~l~la~~L~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (466)
.|++.|..+.. ...-+.+|++.|.++|.+|.++..+...+ ........ . ..-....+
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~-~---~~~~~~~l------------- 245 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQG-C---QTPRVTSL------------- 245 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhh-C---CCCccccc-------------
Confidence 45555543321 13357899999998899998887654222 12221100 0 00000000
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEecc
Q 012314 79 GKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~ 136 (466)
. ..-.+.++...+ .+-|++|+.- .....+|..+|+|+|.+..
T Consensus 246 -------~--g~~sL~el~ali-----~~a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 246 -------A--GKLTLPQLAALI-----DHARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred -------C--CCCCHHHHHHHH-----HhCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 0 011244444444 2379999874 5678899999999998753
No 312
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=56.61 E-value=31 Score=25.81 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=28.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|++.||+++|..|-|--.-...+=+.+.++|.++.+-..+
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CCccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 6788999999887753233456666666788888776664
No 313
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=56.46 E-value=1.2e+02 Score=25.39 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKR 45 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (466)
+++.-.+|.|=......++..|+++|.+|.++..+.....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~ 42 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPA 42 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChH
Confidence 5666778889999999999999999999999998866543
No 314
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=56.26 E-value=1.2e+02 Score=30.31 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (466)
+++.-.||.|=..=++.++..++++|+.|.+++.......+.
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 556667788888889999999999999999999876655443
No 315
>PRK10490 sensor protein KdpD; Provisional
Probab=56.07 E-value=59 Score=35.72 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=34.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 42 (466)
+.||.+=..||-|-.+.|+.-|++|+++|++|.+---..+
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h 63 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETH 63 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCC
Confidence 4588888899999999999999999999999987665543
No 316
>PRK09165 replicative DNA helicase; Provisional
Probab=55.64 E-value=68 Score=32.42 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=33.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCEEEEEeCCcchHHHHHh
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKH---------------GFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~r---------------Gh~Vt~~~~~~~~~~~~~~ 49 (466)
+++...|+.|=..-++.+|...+.+ |..|.|++..-....+...
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R 278 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATR 278 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHH
Confidence 5566678889888888888888753 7899999998666655443
No 317
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=55.59 E-value=90 Score=27.87 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=34.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
-+++...|+.|-..-.+.++.+-+++|..+.+++.....+.+..
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 46667788889988888887776688999999999876665544
No 318
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=55.24 E-value=92 Score=30.87 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 43 (466)
.+||+++-.+..| +++++.|+++|+.|++.-.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 4689999988888 89999999999999999875544
No 319
>PRK14098 glycogen synthase; Provisional
Probab=55.18 E-value=19 Score=36.27 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=30.9
Q ss_pred CCEEEEEcCC------CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 3 RPRVLVMPAP------AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 3 ~~~il~~~~~------~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
++||++++.- ..|=-..+-+|.++|+++||+|.++.+..
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4789998732 33555567899999999999999999954
No 320
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=55.15 E-value=1.4e+02 Score=25.90 Aligned_cols=143 Identities=12% Similarity=0.094 Sum_probs=73.5
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcC-CceeecccchhhhhcCCCc
Q 012314 268 PSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAA-RGQMISWAPQLRVLNHPSI 346 (466)
Q Consensus 268 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-n~~~~~~~p~~~ll~~~~~ 346 (466)
.+.++.|+-|..+ ...+..|...|.++.++ ... ..+.+.+.... .+...........+..+++
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~--------~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl 73 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE--------LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL 73 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC--------CCHHHHHHHhCCCEEEEecCCChhhcCCceE
Confidence 3558888777643 33445555667776544 322 22333322222 2333333333455655555
Q ss_pred ccceeccCCchhhhhhh----cCcceeecccccchhhhH-----HHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcC
Q 012314 347 ACFLSHCGWNSTMEGVS----NGIPFLCWPYFGDQFLNE-----RYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 417 (466)
Q Consensus 347 ~~~i~hgG~~s~~eal~----~GvP~l~~P~~~DQ~~~a-----~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 417 (466)
+|.--+...+.+.++ .++++-+. |.+..+ ..+.+. ++-+.+.....+-.-+..|++.|++++..
T Consensus 74 --ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~~~ 146 (202)
T PRK06718 74 --VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALYDE 146 (202)
T ss_pred --EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHcch
Confidence 888777666666554 45555433 443322 222221 34444432112223346788888887733
Q ss_pred --HHHHHHHHHHHHHHHH
Q 012314 418 --QDFKARALELKEKAMS 433 (466)
Q Consensus 418 --~~~r~~a~~~~~~~~~ 433 (466)
..+-+.+.++++.+++
T Consensus 147 ~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 147 SYESYIDFLYECRQKIKE 164 (202)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 2466677777777765
No 321
>PRK06921 hypothetical protein; Provisional
Probab=55.03 E-value=1.7e+02 Score=26.74 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=26.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeC
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKH-GFRVTFVNT 39 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~ 39 (466)
.++|...+|.|=..=+.+||.+|.++ |+.|.+++.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 46677666766666667888888887 888888775
No 322
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=54.96 E-value=80 Score=31.23 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~~~~~~~ 48 (466)
+++...|+.|=..-++.+|..++. .|+.|.+++..-....+..
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 456667888999999999998875 6999999999866655543
No 323
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=54.92 E-value=1.7e+02 Score=26.62 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=31.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 42 (466)
-+++.-.||.|=..-.+.++...+++|..|.+++....
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 35666678889999999999988889999999998743
No 324
>PRK05748 replicative DNA helicase; Provisional
Probab=54.67 E-value=75 Score=31.66 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHHHh
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
+++...|+.|=..-++.+|...+ +.|+.|.|++..-....+...
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R 250 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMR 250 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHH
Confidence 56677888899999999999887 469999999987665554433
No 325
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=54.56 E-value=1.2e+02 Score=29.50 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=32.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (466)
.++|+-..|.|=..-+..||..+.++|++|.+++.+.+..
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 3445555566999999999999999999999999987654
No 326
>PRK04328 hypothetical protein; Provisional
Probab=54.55 E-value=1e+02 Score=27.79 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=33.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
-+++.-.|+.|-..-.+.++.+-+++|+.+.+++.....+.+...
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~ 69 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRN 69 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHH
Confidence 456667778899887777777766889999999997766655443
No 327
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=54.41 E-value=17 Score=31.07 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=31.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (466)
|++-..++.|-+. ...+.++|.++|++|.++.++.....+.
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 4444445555555 5899999999999999999988777664
No 328
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=54.36 E-value=27 Score=32.27 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCEEEEEeCCcchH
Q 012314 21 LEFSQCLAKHGFRVTFVNTDYNHK 44 (466)
Q Consensus 21 l~la~~L~~rGh~Vt~~~~~~~~~ 44 (466)
.++|..|+++|++|.+++.++...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCC
Confidence 468889999999999999987654
No 329
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=54.31 E-value=70 Score=28.19 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=34.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
-+++...+|.|=..-++.++..-+++|+.|.+++.....+.+.+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 355666678888777888888877889999999998777666554
No 330
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=54.07 E-value=41 Score=31.80 Aligned_cols=34 Identities=15% Similarity=0.380 Sum_probs=29.2
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012314 9 MPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (466)
Q Consensus 9 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 42 (466)
++.+|+|=.--...|++.|.++|++|.+++-..-
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 3467889998899999999999999999998543
No 331
>PRK09739 hypothetical protein; Provisional
Probab=53.65 E-value=35 Score=29.50 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=26.0
Q ss_pred CCCCEEEEEcCCCc--cCHHH-HHHHHHHHHhCCCEEEEEeC
Q 012314 1 MSRPRVLVMPAPAQ--GHVIP-LLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 1 m~~~~il~~~~~~~--GH~~p-~l~la~~L~~rGh~Vt~~~~ 39 (466)
|+++||+++...-. |.-.. .-.+++.|.++||+|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 78888888865433 32222 45567777788999987754
No 332
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.55 E-value=17 Score=33.53 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=37.3
Q ss_pred cccceeccCCchhhhhhh----cCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 346 IACFLSHCGWNSTMEGVS----NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~----~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
++++|+-||-||++.++. .++|++.+-.. .+|- | ..++.+++.++++++++++
T Consensus 65 ~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGF-L-----t~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 65 SDFLISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGF-L-----TDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------Cccc-C-----CcCCHHHHHHHHHHHHcCC
Confidence 344999999999997755 47898887210 1222 2 3467888999999988653
No 333
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=53.54 E-value=46 Score=26.74 Aligned_cols=47 Identities=9% Similarity=0.182 Sum_probs=39.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
+.+|++.+..+.+|-.----++..|.+.|++|.........+.+.+.
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 35799999999999999999999999999999999997665554443
No 334
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=53.44 E-value=22 Score=34.51 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=36.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
|+.+||++...++.+= +-...+.++|.+.|++|.++.++.....+..
T Consensus 1 l~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 1 LENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 4567887776665544 5589999999999999999999877666643
No 335
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=53.25 E-value=1.7e+02 Score=31.36 Aligned_cols=41 Identities=15% Similarity=0.348 Sum_probs=31.8
Q ss_pred CEEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012314 4 PRVLVMPAP--AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (466)
Q Consensus 4 ~~il~~~~~--~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (466)
.|++.++.. +-|=..-...||..|+..|++|.++=.+....
T Consensus 531 ~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~ 573 (726)
T PRK09841 531 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRG 573 (726)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 466666654 45878888999999999999999997765433
No 336
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=53.22 E-value=2.1e+02 Score=28.55 Aligned_cols=27 Identities=26% Similarity=0.159 Sum_probs=21.6
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCceEEec
Q 012314 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~ 135 (466)
.+||++|.... ...+|.++|||++.+.
T Consensus 394 ~~pDl~ig~~~---~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 394 YKADLLIAGGK---ERYTALKLGIPFCDIN 420 (456)
T ss_pred cCCCEEEEccc---hHHHHHhcCCCEEEcc
Confidence 78999998743 5678889999998753
No 337
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=53.20 E-value=1.4e+02 Score=26.12 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=29.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|++-..|+.|-....-.||++|.+++|+|...+.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 45555889999999999999999999999877663
No 338
>CHL00067 rps2 ribosomal protein S2
Probab=52.67 E-value=58 Score=29.03 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=25.1
Q ss_pred CCccEEEeCCCch--hHHHHHHHcCCceEEeccchh
Q 012314 106 EKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSSA 139 (466)
Q Consensus 106 ~~~DlvV~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 139 (466)
..||+||+-.-.. .+..=|.++|||+|.++-...
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 5688887654332 688899999999999875444
No 339
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=52.56 E-value=31 Score=28.59 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=26.6
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhCCCCEEEE
Q 012314 271 VVYVSFGSFTILDQVQFQELALGLELCKRPFLWV 304 (466)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~ 304 (466)
.+|+++||....+...++..+.++.+.+.--++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 7999999987777778888899998777533433
No 340
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=52.45 E-value=1.2e+02 Score=30.55 Aligned_cols=25 Identities=28% Similarity=0.185 Sum_probs=21.2
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCceEE
Q 012314 106 EKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (466)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgiP~v~ 133 (466)
.+||++|... ....+|+++|||++-
T Consensus 392 ~~pDliig~s---~~~~~a~k~giP~~~ 416 (475)
T PRK14478 392 AKADIMLSGG---RSQFIALKAGMPWLD 416 (475)
T ss_pred cCCCEEEecC---chhhhhhhcCCCEEE
Confidence 6899999974 466899999999984
No 341
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.42 E-value=27 Score=31.67 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=36.9
Q ss_pred cccceeccCCchhhhhhh-cCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcC
Q 012314 346 IACFLSHCGWNSTMEGVS-NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 417 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~-~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 417 (466)
++++|+=||-||++.|+. .++|++.+-.. .+|-. ..++.+++.+.++++++.
T Consensus 42 ~d~vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl------~~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 42 ADLIIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFL------SSYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCccc------cccCHHHHHHHHHHHHcC
Confidence 344999999999998876 58888877311 12222 345678888888888764
No 342
>PRK05854 short chain dehydrogenase; Provisional
Probab=52.18 E-value=1.5e+02 Score=27.66 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=23.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
+.++++.++ |-+ =.++|++|+++|++|++++-.
T Consensus 15 k~~lITGas-~GI--G~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 15 KRAVVTGAS-DGL--GLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred CEEEEeCCC-ChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 456666433 333 268899999999999988754
No 343
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=52.12 E-value=21 Score=35.38 Aligned_cols=74 Identities=23% Similarity=0.265 Sum_probs=38.4
Q ss_pred CCeEEEecCCCCCCC-----CCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch--hHHHHHHHcCCc
Q 012314 58 EQIHLVSIPDGMEPW-----EDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVR 130 (466)
Q Consensus 58 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgiP 130 (466)
.+...+.+|-+-... -....+..+++.|.. ...+.+.+.+. .+||+|+..+..- .|..+++++|||
T Consensus 354 ~~a~IlRvPF~~~~gi~~kwisrf~lWPyLe~fa~---d~~~~i~~e~~----~~PdlI~GnYsDgnlvA~LLs~~lgv~ 426 (550)
T PF00862_consen 354 ENARILRVPFGPEKGILRKWISRFDLWPYLEEFAD---DAEREILAELQ----GKPDLIIGNYSDGNLVASLLSRKLGVT 426 (550)
T ss_dssp SSEEEEEE-ESESTEEE-S---GGG-GGGHHHHHH---HHHHHHHHHHT----S--SEEEEEHHHHHHHHHHHHHHHT-E
T ss_pred CCcEEEEecCCCCcchhhhccchhhchhhHHHHHH---HHHHHHHHHhC----CCCcEEEeccCcchHHHHHHHhhcCCc
Confidence 456666666332211 112334445555532 23344444443 5799999876433 788999999999
Q ss_pred eEEeccch
Q 012314 131 GAVFWPSS 138 (466)
Q Consensus 131 ~v~~~~~~ 138 (466)
...+.++-
T Consensus 427 ~~~iaHsL 434 (550)
T PF00862_consen 427 QCFIAHSL 434 (550)
T ss_dssp EEEE-SS-
T ss_pred eehhhhcc
Confidence 99876543
No 344
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.05 E-value=78 Score=23.14 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHhcccCCCCC
Q 012314 405 EEIKNKVDQVLGNQDFKARALELKEKAMSSVRE-GGSSYKTFQNFLQWVKTNALAHNSPV 463 (466)
Q Consensus 405 ~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~-~g~~~~~~~~~v~~~~~~~~~~~~~~ 463 (466)
.+...-++++.+|...-+|.++.++...+++.. +.+........+.-+++.+.+-+.|.
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~ 75 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPL 75 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCch
Confidence 344555667777776666666666666665554 44545556666666666666655553
No 345
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=52.04 E-value=1.2e+02 Score=30.95 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=23.2
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCceEEec
Q 012314 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~ 135 (466)
.+||++|.+.. +..+|+++|||.+.+.
T Consensus 436 ~~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 436 EPVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred cCCCEEEECch---HHHHHHHcCCCEEEec
Confidence 78999999864 6788999999999865
No 346
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=52.02 E-value=1.5e+02 Score=25.11 Aligned_cols=30 Identities=20% Similarity=0.065 Sum_probs=24.4
Q ss_pred CCccEEEeCCCch---hHHHHHHHcCCceEEec
Q 012314 106 EKIDCFIADGNIG---WSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 106 ~~~DlvV~D~~~~---~~~~~A~~lgiP~v~~~ 135 (466)
.+||+|++-.... .+..+|.++|.|++.=+
T Consensus 90 ~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv 122 (181)
T cd01985 90 EKPDLILAGATSIGKQLAPRVAALLGVPQISDV 122 (181)
T ss_pred hCCCEEEECCcccccCHHHHHHHHhCCCcceeE
Confidence 5699999887554 68889999999998743
No 347
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=52.00 E-value=1.5e+02 Score=25.20 Aligned_cols=99 Identities=11% Similarity=0.033 Sum_probs=56.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc-----hHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN-----HKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDL 78 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (466)
--|-+++..|.|=....+.+|-+=+.+|.+|.++-.-.. +..+.+. .+++.+.....+..-.. .+.
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~-------~~~v~~~~~g~~~~~~~--~~~ 92 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQL-------GQNLDWVRCDLPRCLDT--PHL 92 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHh-------CCCcEEEECCCCCeeeC--CCc
Confidence 357888999999999888888777788888877754321 1112111 24677777654322111 111
Q ss_pred H-HHHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCch
Q 012314 79 G-KLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118 (466)
Q Consensus 79 ~-~~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~ 118 (466)
. ... +.....++...+.+.+ ..+|+||.|....
T Consensus 93 ~~~~~----~~~~~~~~~a~~~l~~---~~~dlvVLDEi~~ 126 (178)
T PRK07414 93 DESEK----KALQELWQYTQAVVDE---GRYSLVVLDELSL 126 (178)
T ss_pred CHHHH----HHHHHHHHHHHHHHhC---CCCCEEEEehhHH
Confidence 1 111 1122333333334433 7899999998543
No 348
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=51.92 E-value=21 Score=32.16 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=21.1
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 15 GHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 15 GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
|=-..+-.|+++|+++||+|+++++..
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 444567889999999999999999965
No 349
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=51.90 E-value=11 Score=31.24 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=24.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
||.++-.+..|+ ++|..|+++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 455555555554 78999999999999999975
No 350
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.78 E-value=39 Score=32.34 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=37.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
.-|.|+-.-|.|-..-+-.+|..+.++|+.+-+++.+-+......
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfD 146 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFD 146 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHH
Confidence 346677777889999999999999999999999999876654433
No 351
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=51.70 E-value=1.3e+02 Score=28.21 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=23.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|||+|+..+.. .+...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcC
Confidence 47888865543 366778888999999866654
No 352
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.54 E-value=16 Score=34.03 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=38.6
Q ss_pred cccceeccCCchhhhhhhc----CcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 346 IACFLSHCGWNSTMEGVSN----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~~----GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
++++|+=||-||++.+... ++|++.+-. - .+|-. ..++.+++.+++++++++.
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~-------------G-~lGFL------t~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLAPCGIPLLTINT-------------G-HLGFL------TEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeC-------------C-CCccc------ccCCHHHHHHHHHHHHcCC
Confidence 4559999999999999764 789998821 0 12222 3457889999999998654
No 353
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=51.26 E-value=87 Score=27.00 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCc-cCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 2 SRPRVLVMPAPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 2 ~~~~il~~~~~~~-GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
.+.++-|++.+.. |-..-++.-++....+|-.|.++++.
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~ 41 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPA 41 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecc
Confidence 4556666665544 88899999999999999999999996
No 354
>PRK12827 short chain dehydrogenase; Provisional
Probab=51.02 E-value=1.1e+02 Score=27.03 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
.+++++ + ++.|.+- ..+|++|+++||+|+++..
T Consensus 6 ~~~ilI-t-Gasg~iG--~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 6 SRRVLI-T-GGSGGLG--RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCEEEE-E-CCCChHH--HHHHHHHHHCCCeEEEEcC
Confidence 344443 3 4555554 5889999999999988653
No 355
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=51.01 E-value=1.7e+02 Score=29.82 Aligned_cols=42 Identities=10% Similarity=0.347 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccc
Q 012314 90 PGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (466)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~ 137 (466)
....+..++.+++ .++++||.|.. +..+|+++|++.|.+.+.
T Consensus 131 ~~e~~~~~~~l~~---~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 131 EEDARSCVNDLRA---RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHH---CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 4567778888887 67999999973 679999999999988775
No 356
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=50.71 E-value=78 Score=30.14 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeCC
Q 012314 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGF-RVTFVNTD 40 (466)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh-~Vt~~~~~ 40 (466)
+..||+++-.++-| ..+|+.|++.|+ +++++=.+
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 46788998887766 678899999997 67766554
No 357
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=50.66 E-value=1.5e+02 Score=24.90 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHHHH
Q 012314 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEE 99 (466)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 99 (466)
+..+.+...++|.+|.|+...... +.+....-....+++++.....+.- .....+++++.
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~--~~~~~~~l~~~yP~l~ivg~~~g~f------------------~~~~~~~i~~~ 96 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEV--LEKAAANLRRRYPGLRIVGYHHGYF------------------DEEEEEAIINR 96 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHH--HHHHHHHHHHHCCCeEEEEecCCCC------------------ChhhHHHHHHH
Confidence 455666666788999999986422 1111111112346777775443311 12345566666
Q ss_pred HhcCCCCCccEEEeCCCch----hHHHHHHHcCCceEEeccchh
Q 012314 100 INSREDEKIDCFIADGNIG----WSMEIAKKMNVRGAVFWPSSA 139 (466)
Q Consensus 100 l~~~~~~~~DlvV~D~~~~----~~~~~A~~lgiP~v~~~~~~~ 139 (466)
+++ .+||+|++-.-.+ |.....+.++.+ +.++.+.+
T Consensus 97 I~~---~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~ 136 (172)
T PF03808_consen 97 INA---SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGA 136 (172)
T ss_pred HHH---cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECch
Confidence 666 7899999988666 677778888888 44444433
No 358
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=50.62 E-value=73 Score=31.56 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=52.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
+|++++. .-.....+++.|.+-|-+|..+............. .. ... ..+.
T Consensus 312 krvai~~-----~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~-------~~-~~~-----------~~D~----- 362 (432)
T TIGR01285 312 KKVAIAA-----EPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLP-------VE-TVV-----------IGDL----- 362 (432)
T ss_pred CEEEEEc-----CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCC-------cC-cEE-----------eCCH-----
Confidence 4565554 22356788888888898887777654433221110 00 000 0011
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEec
Q 012314 84 KCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~ 135 (466)
..+.+++++ .++|++|.... ...+|+++|||++.+.
T Consensus 363 -------~~l~~~i~~------~~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 363 -------EDLEDLACA------AGADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred -------HHHHHHHhh------cCCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 123444444 67999998864 5779999999999864
No 359
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=50.57 E-value=1.3e+02 Score=27.18 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=56.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
++|+++ +|+++ ..+|+++|...++.+++.+............ .+ ... . +
T Consensus 3 ~~ilvl--GGT~D---ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~-------~~-~~~--~-G--------------- 51 (257)
T COG2099 3 MRILLL--GGTSD---ARALAKKLAAAPVDIILSSLTGYGAKLAEQI-------GP-VRV--G-G--------------- 51 (257)
T ss_pred ceEEEE--eccHH---HHHHHHHhhccCccEEEEEcccccccchhcc-------CC-eee--c-C---------------
Confidence 445554 34444 4689999999998888877765555443321 01 110 0 0
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchh------HHHHHHHcCCceEEec
Q 012314 84 KCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGW------SMEIAKKMNVRGAVFW 135 (466)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~------~~~~A~~lgiP~v~~~ 135 (466)
.-..+.+.+++++ .+.|++|=-.+.++ +..+|+..|||++.+-
T Consensus 52 ---~l~~e~l~~~l~e------~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 52 ---FLGAEGLAAFLRE------EGIDLLIDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred ---cCCHHHHHHHHHH------cCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 0124457777777 78998875444333 3458899999999964
No 360
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=50.48 E-value=22 Score=30.23 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=30.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (466)
||++.-.++. ..+-...+.++|.++|++|.++.++.....+.
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 4555554544 45556799999999999999999987655553
No 361
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=50.42 E-value=25 Score=34.22 Aligned_cols=108 Identities=13% Similarity=0.195 Sum_probs=60.5
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeC-CcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHH
Q 012314 5 RVLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNT-DYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (466)
Q Consensus 5 ~il~~~-~~~~GH~~p~l~la~~L~~rGh~Vt~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
+|++.. .++.|-..-.+.|.++|++||++|.=+-. +.+.+- .|+..--+.+..+ +
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP---------------~~H~~atG~~srN--------L 58 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDP---------------GYHTAATGRPSRN--------L 58 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCc---------------hhhhHhhCCccCC--------C
Confidence 344544 44569999999999999999999965433 222211 1111111222111 1
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCC------------chhHHHHHHHcCCceEEeccchhH
Q 012314 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIADGN------------IGWSMEIAKKMNVRGAVFWPSSAA 140 (466)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~------------~~~~~~~A~~lgiP~v~~~~~~~~ 140 (466)
+.++ ...+.+++++.+-. ...|+.|++.. ...+..+|+.+|+|+|.+..+...
T Consensus 59 D~~m-m~~~~v~~~f~~~~----~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~ 123 (451)
T COG1797 59 DSWM-MGEEGVRALFARAA----ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGL 123 (451)
T ss_pred chhh-cCHHHHHHHHHHhc----CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcch
Confidence 1111 12334455444422 33456654321 346889999999999988766543
No 362
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=50.35 E-value=1.3e+02 Score=25.04 Aligned_cols=93 Identities=13% Similarity=0.208 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHHHH
Q 012314 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEE 99 (466)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 99 (466)
+..+.+.|+++|+.+.++|...... ...... .....-+..+...+.... ...+ ...+..+++.
T Consensus 90 ~~~~l~~l~~~g~~~~i~Tn~~~~~--~~~~~~-~~l~~~f~~i~~~~~~~~--~KP~------------~~~~~~~~~~ 152 (183)
T TIGR01509 90 VEPLLEALRARGKKLALLTNSPRDH--AVLVQE-LGLRDLFDVVIFSGDVGR--GKPD------------PDIYLLALKK 152 (183)
T ss_pred HHHHHHHHHHCCCeEEEEeCCchHH--HHHHHh-cCCHHHCCEEEEcCCCCC--CCCC------------HHHHHHHHHH
Confidence 5677888999999999999865443 111100 000011222222211111 1111 1223333444
Q ss_pred HhcCCCCCccEEEeCCCchhHHHHHHHcCCceEE
Q 012314 100 INSREDEKIDCFIADGNIGWSMEIAKKMNVRGAV 133 (466)
Q Consensus 100 l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~ 133 (466)
+.- .+-++++++- .......|+..|+.+|.
T Consensus 153 ~~~---~~~~~~~vgD-~~~di~aA~~~G~~~i~ 182 (183)
T TIGR01509 153 LGL---KPEECLFVDD-SPAGIEAAKAAGMHTVL 182 (183)
T ss_pred cCC---CcceEEEEcC-CHHHHHHHHHcCCEEEe
Confidence 322 2335666665 34688999999998875
No 363
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=50.15 E-value=1.7e+02 Score=25.35 Aligned_cols=40 Identities=15% Similarity=0.394 Sum_probs=30.2
Q ss_pred CEEEEEcC--CCccCHHHHHHHHHHHHh-CCCEEEEEeCCcch
Q 012314 4 PRVLVMPA--PAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNH 43 (466)
Q Consensus 4 ~~il~~~~--~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~~ 43 (466)
+|++.++. +|.|=-.-...||..|++ .|++|.++=.+...
T Consensus 35 ~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 35 NNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 45555553 566888889999999996 69999998766543
No 364
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=50.02 E-value=61 Score=28.75 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCEEEEEeCCcc
Q 012314 21 LEFSQCLAKHGFRVTFVNTDYN 42 (466)
Q Consensus 21 l~la~~L~~rGh~Vt~~~~~~~ 42 (466)
..+|+.|.+.||+|+.+-....
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCHH
Confidence 5789999999999999988643
No 365
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.99 E-value=21 Score=33.06 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=38.4
Q ss_pred cccceeccCCchhhhhhh----cCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 346 IACFLSHCGWNSTMEGVS----NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~----~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
++++|+=||-||++.++. .++|++++-.. .+|- | -.++++++.+++++++++.
T Consensus 65 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGF-L-----t~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 65 ADMVISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGF-L-----ATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCc-c-----cccCHHHHHHHHHHHHcCC
Confidence 344999999999999877 37899888321 1232 2 3467889999999998653
No 366
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=49.83 E-value=1.4e+02 Score=24.13 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (466)
+++...+|.|-..-+..++..+...|..|.++.........
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~ 42 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEEL 42 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHH
Confidence 67777888899999999999999999999999987665544
No 367
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=49.59 E-value=2.1e+02 Score=26.23 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=33.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 43 (466)
.+++|+..++.|-..-+..|+..+..+|+.|.+++.+.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4778887788888888888899999899999999997664
No 368
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.51 E-value=1.9e+02 Score=25.78 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEeCCCch---hHHHHHHHcCCceEE
Q 012314 90 PGKLEELIEEINSREDEKIDCFIADGNIG---WSMEIAKKMNVRGAV 133 (466)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~DlvV~D~~~~---~~~~~A~~lgiP~v~ 133 (466)
....+.+++.|+. -++.+.|.-+. -+..+|...|||++.
T Consensus 137 ~~aM~~~m~~Lk~-----r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALKE-----RGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHHH-----CCeEEEcccccccchhhhhHhhcCCceee
Confidence 5566777777754 68999998766 456789999999987
No 369
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=49.25 E-value=1.7e+02 Score=29.08 Aligned_cols=105 Identities=12% Similarity=0.165 Sum_probs=60.5
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch-H-HHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHH
Q 012314 6 VLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH-K-RVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLI 82 (466)
Q Consensus 6 il~~~-~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
+++.. ..+.|=..-...|++.|+++|++|..+-+.+.. + ...... .+.+..+ .
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D~~~~~~~----------------~g~~~~~-l------- 57 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYIDPMFHTQA----------------TGRPSRN-L------- 57 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCCHHHHHHH----------------hCCchhh-C-------
Confidence 34443 334588889999999999999999998764210 0 000000 0001000 0
Q ss_pred HHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCC-------c-----hhHHHHHHHcCCceEEeccchh
Q 012314 83 EKCLQVMPGKLEELIEEINSREDEKIDCFIADGN-------I-----GWSMEIAKKMNVRGAVFWPSSA 139 (466)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~-------~-----~~~~~~A~~lgiP~v~~~~~~~ 139 (466)
+.+. .....+++.+.++. .+.|++|++.. . .....+|+.++.|++.+.....
T Consensus 58 d~~~-~~~~~i~~~~~~~~----~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 58 DSFF-MSEAQIQECFHRHS----KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred Cccc-CCHHHHHHHHHHhc----ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 0000 12334444454443 45799997654 1 2377899999999999886553
No 370
>CHL00175 minD septum-site determining protein; Validated
Probab=49.23 E-value=1.7e+02 Score=26.87 Aligned_cols=38 Identities=21% Similarity=0.531 Sum_probs=29.3
Q ss_pred CEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 4 PRVLVMPA--PAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 4 ~~il~~~~--~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
.+++.+.. ||-|=..-...||..|+++|++|.++=.+.
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34555553 455888899999999999999999986654
No 371
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=49.17 E-value=22 Score=31.12 Aligned_cols=109 Identities=14% Similarity=0.031 Sum_probs=58.6
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhc--cHH
Q 012314 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVM--PGK 92 (466)
Q Consensus 15 GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 92 (466)
.|+...+.++..++.||=.+.|+++........+.-.. ...++.... ..... ...+.......+.+.. .+.
T Consensus 92 ~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~---r~~gy~~~~---~w~~G-~lTN~~~l~g~~~~~~~~~pd 164 (251)
T KOG0832|consen 92 SYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAAR---RAGGYSHNR---KWLGG-LLTNARELFGALVRKFLSLPD 164 (251)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHH---HhcCceeee---eeccc-eeecchhhcccccccccCCCc
Confidence 67778888999999999999999998655543322110 001222211 11111 1122222222222110 111
Q ss_pred HHHHHHHHhcCCCCCccEEEe-CCCch-hHHHHHHHcCCceEEecc
Q 012314 93 LEELIEEINSREDEKIDCFIA-DGNIG-WSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 93 ~~~ll~~l~~~~~~~~DlvV~-D~~~~-~~~~~A~~lgiP~v~~~~ 136 (466)
..-++.. ..+||||+ |.... .|+.=|.+++||.|.+.=
T Consensus 165 ~~~f~~t------~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVD 204 (251)
T KOG0832|consen 165 ALCFLPT------LTPDLVVVLNPEENHSAILEAAKMAIPTIGIVD 204 (251)
T ss_pred ceeeccc------CCcceeEecCcccccHHHHHHHHhCCCeEEEec
Confidence 1112222 45688876 54444 788899999999998753
No 372
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=48.87 E-value=2.1e+02 Score=26.03 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEeCCCch--hHHHHHHHcCCceEEeccch
Q 012314 90 PGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWPSS 138 (466)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgiP~v~~~~~~ 138 (466)
...+.++++.+++ .+..+|+++.... .+-.+|+..|+|.+.+.+..
T Consensus 203 ~~~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 203 PADLKRLIDLAKE---KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHHHHH---cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 4456666666666 7899999998655 56689999999998876543
No 373
>PRK06182 short chain dehydrogenase; Validated
Probab=48.86 E-value=1.1e+02 Score=27.64 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|+.++++ ++ ++.|.+ =.+++++|+++||+|+.+...
T Consensus 1 ~~~k~vl-It-Gasggi--G~~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 1 MQKKVAL-VT-GASSGI--GKATARRLAAQGYTVYGAARR 36 (273)
T ss_pred CCCCEEE-EE-CCCChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 6555444 44 344444 356899999999999887654
No 374
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=48.79 E-value=87 Score=24.58 Aligned_cols=23 Identities=26% Similarity=0.089 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCc
Q 012314 19 PLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 19 p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
-+-.+...++++|++|++++-..
T Consensus 13 ~~gg~i~~~~~~g~~v~vv~~t~ 35 (128)
T PF02585_consen 13 GCGGTIAKLAEAGHRVVVVTLTD 35 (128)
T ss_dssp HHHHHHHHHHHTT-EEEEEECE-
T ss_pred hhHHHHHHHHhcCCeEEEEEecc
Confidence 35566678889999998887643
No 375
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.74 E-value=1.8e+02 Score=28.61 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=32.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHH-HhCCCEEEEEeCCcchHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCL-AKHGFRVTFVNTDYNHKRV 46 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L-~~rGh~Vt~~~~~~~~~~~ 46 (466)
.++|+-.+|.|=..-+..||..+ ..+|+.|.+++.+.+....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA 267 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA 267 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH
Confidence 35566666779999999999876 5789999999998755543
No 376
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=48.70 E-value=2.1e+02 Score=30.71 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=31.6
Q ss_pred CEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012314 4 PRVLVMPA--PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (466)
Q Consensus 4 ~~il~~~~--~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (466)
.|++.++. +|-|-..-...||..|+..|++|.++=.+....
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~ 588 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKA 588 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCch
Confidence 35555553 455999999999999999999999997765433
No 377
>PRK07773 replicative DNA helicase; Validated
Probab=48.61 E-value=1e+02 Score=33.76 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=34.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHh
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~~~~~~~~ 49 (466)
+++..-|+.|=..-.+.+|...+. .|..|.|++-.-....+...
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R 264 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMR 264 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 566778888999999999998875 48899999987666655443
No 378
>PRK09004 FMN-binding protein MioC; Provisional
Probab=48.52 E-value=1.1e+02 Score=24.82 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCccCHHH-HHHHHHHHHhCCCEEEEEeC
Q 012314 1 MSRPRVLVMPAPAQGHVIP-LLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p-~l~la~~L~~rGh~Vt~~~~ 39 (466)
|++.+|++-+ -+|+..- .-.|++.|.++|++|+++..
T Consensus 1 M~~i~I~ygS--~tGnae~~A~~l~~~~~~~g~~~~~~~~ 38 (146)
T PRK09004 1 MADITLISGS--TLGGAEYVADHLAEKLEEAGFSTETLHG 38 (146)
T ss_pred CCeEEEEEEc--CchHHHHHHHHHHHHHHHcCCceEEecc
Confidence 7765555444 3455443 45677888889999998644
No 379
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=48.39 E-value=63 Score=26.85 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred cchhhhccCCCCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceee-cc-c
Q 012314 258 NCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMI-SW-A 335 (466)
Q Consensus 258 ~l~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~-~~-~ 335 (466)
++-+++.+.. ..+++ |. ....+....++..+.+-+++-++..... ...+..... +. ++ .
T Consensus 22 ~lg~~La~~g---~~lv~-Gg----~~GlM~a~a~ga~~~gg~viGVlp~~l~-~~~~~~~~~----------i~~~~~~ 82 (159)
T TIGR00725 22 RLGKELAKKG---HILIN-GG----RTGVMEAVSKGAREAGGLVVGILPDEDF-AGNPYLTIK----------VKTGMNF 82 (159)
T ss_pred HHHHHHHHCC---CEEEc-CC----chhHHHHHHHHHHHCCCeEEEECChhhc-cCCCCceEE----------EECCCcc
Q ss_pred chhhhhcCCCcccceeccCCchhhhh---hhcCcceeeccccc
Q 012314 336 PQLRVLNHPSIACFLSHCGWNSTMEG---VSNGIPFLCWPYFG 375 (466)
Q Consensus 336 p~~~ll~~~~~~~~i~hgG~~s~~ea---l~~GvP~l~~P~~~ 375 (466)
+...++...+-..++--||.||+-|. +.+++|+++++...
T Consensus 83 ~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~g 125 (159)
T TIGR00725 83 ARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGTG 125 (159)
T ss_pred hHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECCC
No 380
>PLN02327 CTP synthase
Probab=48.04 E-value=1.2e+02 Score=30.99 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=33.9
Q ss_pred EEEEEcCC---CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012314 5 RVLVMPAP---AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKR 45 (466)
Q Consensus 5 ~il~~~~~---~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (466)
|.+|++.+ +-|-=.-...|+..|..||++|+.+-.+++.+.
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNv 45 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNT 45 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeeccccccc
Confidence 68888866 446667889999999999999999999887553
No 381
>PRK06270 homoserine dehydrogenase; Provisional
Probab=48.02 E-value=79 Score=30.14 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=36.3
Q ss_pred chhhhhcCCCccccee------ccC---CchhhhhhhcCcceee---cccccchhhhHHHHHHhhhceeEe
Q 012314 336 PQLRVLNHPSIACFLS------HCG---WNSTMEGVSNGIPFLC---WPYFGDQFLNERYICDFWKVGLKF 394 (466)
Q Consensus 336 p~~~ll~~~~~~~~i~------hgG---~~s~~eal~~GvP~l~---~P~~~DQ~~~a~rv~~~~G~G~~l 394 (466)
+..++|..+.++++|- |+| ..-+.+||.+|+++|+ -|+...-....+..++ .|+....
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~-~g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKK-NGVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHH-cCCEEEE
Confidence 5567786666665665 443 3455899999999999 4764433334444444 3776665
No 382
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=47.92 E-value=2e+02 Score=25.49 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=28.7
Q ss_pred CEEEEEcCCCc--cCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 4 PRVLVMPAPAQ--GHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 4 ~~il~~~~~~~--GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
++.+|++.-.+ |=......|++.|.++|++|-..=+-
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPV 40 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPV 40 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECce
Confidence 34566664433 88899999999999999999887654
No 383
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=47.91 E-value=55 Score=31.36 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=24.6
Q ss_pred hhcCCCcccceeccCCch---hhhhhhcCcceeec
Q 012314 340 VLNHPSIACFLSHCGWNS---TMEGVSNGIPFLCW 371 (466)
Q Consensus 340 ll~~~~~~~~i~hgG~~s---~~eal~~GvP~l~~ 371 (466)
++..-+-+++|++||.-| +..|...|+|+++.
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 454433334999999987 89999999999875
No 384
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=47.82 E-value=1.4e+02 Score=26.78 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=30.9
Q ss_pred EEEEcCC---CccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012314 6 VLVMPAP---AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (466)
Q Consensus 6 il~~~~~---~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (466)
.+|++.+ +-|-=.-...++..|..||++|+..--+++.+
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN 43 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLN 43 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeeccccc
Confidence 4566644 44666778899999999999999999887755
No 385
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.76 E-value=23 Score=32.97 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=38.4
Q ss_pred cccceeccCCchhhhhhh----cCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 346 IACFLSHCGWNSTMEGVS----NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~----~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
++++|+=||-||++.|.. .++|++++-.. .+|-.. .++.+++.+++++++++.
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~------~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLT------QIPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEee------ccCHHHHHHHHHHHHcCC
Confidence 344999999999999864 47899988310 233332 367899999999998653
No 386
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=47.71 E-value=45 Score=25.54 Aligned_cols=38 Identities=8% Similarity=0.095 Sum_probs=27.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~ 38 (466)
|++.||+++|..|-|--.-+-.+-.+..+.|.++.+-.
T Consensus 1 m~~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A 38 (106)
T PRK10499 1 MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEE
Confidence 78889999998888655544466666677888777644
No 387
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=47.58 E-value=1.7e+02 Score=25.66 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=23.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012314 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (466)
Q Consensus 12 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 43 (466)
.|.|++- .+||++|+..||+|++.+.....
T Consensus 7 ~GtGniG--~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 7 IGTGNIG--SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred eccChHH--HHHHHHHHhCCCeEEEecCCChh
Confidence 4566665 57899999999999999875443
No 388
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=47.54 E-value=86 Score=29.93 Aligned_cols=84 Identities=18% Similarity=0.168 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcchHH--HHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHH
Q 012314 19 PLLEFSQCLAKHGFRVTFVNTDYNHKR--VVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEEL 96 (466)
Q Consensus 19 p~l~la~~L~~rGh~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (466)
-+.++++.|.++|++|.++..+...+. ....... ...-..+. +. ..-.+.++
T Consensus 203 ~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~----~~~~~~~~--------------------l~--g~~sL~el 256 (352)
T PRK10422 203 KFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQG----CQTPPVTA--------------------LA--GKTTFPEL 256 (352)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHh----cCCCcccc--------------------cc--CCCCHHHH
Confidence 478999999888999988876533222 1111000 00000000 00 11124444
Q ss_pred HHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEec
Q 012314 97 IEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 97 l~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~ 135 (466)
...++ +-|++|+.- .....+|..+|+|+|.+.
T Consensus 257 ~ali~-----~a~l~v~nD--SGp~HlAaA~g~P~v~lf 288 (352)
T PRK10422 257 GALID-----HAQLFIGVD--SAPAHIAAAVNTPLICLF 288 (352)
T ss_pred HHHHH-----hCCEEEecC--CHHHHHHHHcCCCEEEEE
Confidence 44442 379999874 457889999999999875
No 389
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=47.43 E-value=1.6e+02 Score=27.54 Aligned_cols=27 Identities=0% Similarity=0.031 Sum_probs=22.6
Q ss_pred ccEEEeCCCchhHHHHHHHcCCceEEecc
Q 012314 108 IDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 108 ~DlvV~D~~~~~~~~~A~~lgiP~v~~~~ 136 (466)
-|++|+.- .....+|..+|+|.|.++.
T Consensus 254 a~l~I~nD--SGp~HlA~A~g~p~valfG 280 (322)
T PRK10964 254 AKAVVSVD--TGLSHLTAALDRPNITLYG 280 (322)
T ss_pred CCEEEecC--CcHHHHHHHhCCCEEEEEC
Confidence 79999874 5578899999999998764
No 390
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=47.10 E-value=1.7e+02 Score=26.86 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHhcCCCCCccEEEeCCCch--hHHHHHHHcCCceEEecc
Q 012314 90 PGKLEELIEEINSREDEKIDCFIADGNIG--WSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~DlvV~D~~~~--~~~~~A~~lgiP~v~~~~ 136 (466)
...+.++++.+++ .+..+|+++.... .+-.+|+..|++.+.+.+
T Consensus 206 ~~~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 206 PKQLAELVEFVKK---SDVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHHHHH---cCCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 4456666666666 7799999998665 566799999999877543
No 391
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=47.06 E-value=96 Score=30.85 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=22.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
|-|+..+|.| |.+||+-|+++|+.|+..=.
T Consensus 2 ~hfigigG~g----m~~la~~l~~~G~~V~~~D~ 31 (448)
T TIGR01081 2 IHILGICGTF----MGGLAMIAKQLGHEVTGSDA 31 (448)
T ss_pred EEEEEECHHh----HHHHHHHHHhCCCEEEEECC
Confidence 4455555555 89999999999999986443
No 392
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.95 E-value=21 Score=32.87 Aligned_cols=52 Identities=13% Similarity=0.071 Sum_probs=36.4
Q ss_pred cccceeccCCchhhhhhh---cCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcC
Q 012314 346 IACFLSHCGWNSTMEGVS---NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 417 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~---~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 417 (466)
++++|.-||-||+++++. .++|++.++. |-.-.+ ..+.++++.+++.+++++
T Consensus 58 ~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~---------------G~lGFl-----~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEHKTKKDIPILGINM---------------GTLGFL-----TEVEPEETFFALSRLLEG 112 (277)
T ss_pred CCEEEEEeCcHHHHHHHHhcCCCCeEEEEeC---------------CCCCcc-----ccCCHHHHHHHHHHHHcC
Confidence 345999999999998874 4568888863 222122 234578888888888854
No 393
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=46.91 E-value=2e+02 Score=25.33 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=23.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
.++++ ++.|.+- ..+|+.|.++|++|.++....
T Consensus 4 ~vlIt-G~s~~iG--~~la~~l~~~g~~vi~~~r~~ 36 (245)
T PRK12824 4 IALVT-GAKRGIG--SAIARELLNDGYRVIATYFSG 36 (245)
T ss_pred EEEEe-CCCchHH--HHHHHHHHHcCCEEEEEeCCc
Confidence 34444 4556555 568999999999998887653
No 394
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=46.67 E-value=1.3e+02 Score=27.22 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=52.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHH
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIE 83 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
++|+++..-+-| ..||+.|.++|+.|++.+...... . .. .+..... ..+.
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~-~~--------~~~~v~~--G~l~------------- 52 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-P-AD--------LPGPVRV--GGFG------------- 52 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-c-cc--------CCceEEE--CCCC-------------
Confidence 456666533333 478999999999888766654433 1 10 1122211 0000
Q ss_pred HHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchh-------HHHHHHHcCCceEEec
Q 012314 84 KCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGW-------SMEIAKKMNVRGAVFW 135 (466)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~-------~~~~A~~lgiP~v~~~ 135 (466)
..+.+.++++. .++|+|| |...+. +..+|+.+|||++.|-
T Consensus 53 -----~~~~l~~~l~~------~~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 53 -----GAEGLAAYLRE------EGIDLVI-DATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred -----CHHHHHHHHHH------CCCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 12345566665 7899876 443332 4468899999999975
No 395
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=46.61 E-value=33 Score=29.70 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=31.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 42 (466)
+.||.|=..+|-|-.+.|+.=|++|.++|-+|.+..-...
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 4688888899999999999999999999999998776544
No 396
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=46.45 E-value=1.3e+02 Score=27.03 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=22.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|.++++ ++.|.+- .++++.|+++||+|.++...
T Consensus 11 k~~lIt-Ga~~~iG--~~ia~~l~~~G~~vv~~~~~ 43 (265)
T PRK07097 11 KIALIT-GASYGIG--FAIAKAYAKAGATIVFNDIN 43 (265)
T ss_pred CEEEEe-CCCchHH--HHHHHHHHHCCCeEEEEeCC
Confidence 445555 4444443 68899999999998877543
No 397
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=46.43 E-value=1.4e+02 Score=23.22 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=32.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
||++..-++.|=......+++.|+++|.+|.++-.++
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888888999999999999999999999998876
No 398
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=46.43 E-value=98 Score=27.19 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=28.7
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012314 7 LVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (466)
Q Consensus 7 l~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 42 (466)
++---.+.|--.-.+.++--+.+.||+|+.+++...
T Consensus 32 lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T 67 (235)
T COG2874 32 LIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELT 67 (235)
T ss_pred EEECCCCccHHHHHHHHHHHHHhCCceEEEEEechh
Confidence 344445668888888999999999999999999753
No 399
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=46.29 E-value=32 Score=33.85 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=27.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|+++||.|+-. |++- +.+|..|+++||+|+.+-..
T Consensus 1 m~~~kI~VIGl---G~~G--~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 1 MSFETISVIGL---GYIG--LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CCccEEEEECc---chhh--HHHHHHHHhCCCEEEEEeCC
Confidence 88889888744 4432 57789999999999988764
No 400
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=46.17 E-value=1.2e+02 Score=28.27 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=32.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 43 (466)
..|++.-.+|.|=..-+..++..|.++|+.|.++..+...
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3456666778899999999999999999999998887543
No 401
>PRK08309 short chain dehydrogenase; Provisional
Probab=46.17 E-value=1.8e+02 Score=24.56 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCEEEEEeCC
Q 012314 21 LEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 21 l~la~~L~~rGh~Vt~~~~~ 40 (466)
.++++.|+++|++|++++..
T Consensus 13 g~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 13 KRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred HHHHHHHHHCcCEEEEEECC
Confidence 45999999999999998754
No 402
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=46.15 E-value=29 Score=34.57 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCccCHHHH------------HHHHHHHHhCCCEEEEEeCCc
Q 012314 2 SRPRVLVMPAPAQGHVIPL------------LEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~------------l~la~~L~~rGh~Vt~~~~~~ 41 (466)
+.+||++-..|..-.+.|. .+||+++..+|++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 3456776666665665553 588999999999999999764
No 403
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=46.13 E-value=1.4e+02 Score=28.14 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=33.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 43 (466)
.++++-.+|-|=..-+..||..|+.+|++|.++..+.+.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 466666777799999999999999999999999987654
No 404
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=46.08 E-value=1.5e+02 Score=27.14 Aligned_cols=99 Identities=14% Similarity=0.179 Sum_probs=56.1
Q ss_pred EEEEEcCCCcc----CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHH
Q 012314 5 RVLVMPAPAQG----HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGK 80 (466)
Q Consensus 5 ~il~~~~~~~G----H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
.|++.|..+.. ...-+..+++.|.++|++|.++..+...+......... .+.....+.
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~----~~~~~~~~~-------------- 184 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAAAL----GGPRVVNLA-------------- 184 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhc----CCCccccCc--------------
Confidence 35555544321 23358899999999999999988766544443321000 000000000
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEecc
Q 012314 81 LIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~ 136 (466)
....+.++...++ +-|++|+-- .....+|..+|+|++.+..
T Consensus 185 --------~~~~l~e~~~li~-----~~~l~I~~D--sg~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 185 --------GKTSLRELAALLA-----RADLVVTND--SGPMHLAAALGTPTVALFG 225 (279)
T ss_pred --------CCCCHHHHHHHHH-----hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 0112333444432 369999764 3577888899999998764
No 405
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.03 E-value=1.3e+02 Score=28.39 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=25.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
++++++ ++.+.+- .++|++|+.+|.+|++.+-..
T Consensus 36 ~~~vVT-GansGIG--~eta~~La~~Ga~Vv~~~R~~ 69 (314)
T KOG1208|consen 36 KVALVT-GATSGIG--FETARELALRGAHVVLACRNE 69 (314)
T ss_pred cEEEEE-CCCCchH--HHHHHHHHhCCCEEEEEeCCH
Confidence 456666 4444443 688999999999999999875
No 406
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=45.97 E-value=1.9e+02 Score=25.78 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=27.6
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 6 VLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 6 il~~~-~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
|.++. -||-|=..-...||.+|+++|++|.++=.+.
T Consensus 3 i~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 39 (251)
T TIGR01969 3 ITIASGKGGTGKTTITANLGVALAKLGKKVLALDADI 39 (251)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 44444 3455888888999999999999999986554
No 407
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=45.80 E-value=1.7e+02 Score=24.21 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=20.8
Q ss_pred ccceeccCCc------hhhhhhhcCcceeeccc
Q 012314 347 ACFLSHCGWN------STMEGVSNGIPFLCWPY 373 (466)
Q Consensus 347 ~~~i~hgG~~------s~~eal~~GvP~l~~P~ 373 (466)
.+++++.|.| .+.+|...++|+|++.-
T Consensus 61 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 61 GALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 3377777754 66788999999999963
No 408
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=45.74 E-value=1.7e+02 Score=24.16 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=73.9
Q ss_pred EEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeecccchhhhhcCCCcccceecc
Q 012314 274 VSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHC 353 (466)
Q Consensus 274 vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hg 353 (466)
|-.||.+ +...+++....++.++..+-..+.+- -..|+.+.+ |+-...- .+. +++|.=+
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~Sa------HRtp~~~~~----------~~~~a~~-~g~--~viIa~A 61 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVSA------HRTPELMLE----------YAKEAEE-RGI--KVIIAGA 61 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEECc------ccCHHHHHH----------HHHHHHH-CCC--eEEEEeC
Confidence 4456533 66788899999999998765444433 234454332 1111000 123 3388877
Q ss_pred CCchhhhh---hhcCcceeecccccc---hhhhHHHHHH--hhh--ceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHH
Q 012314 354 GWNSTMEG---VSNGIPFLCWPYFGD---QFLNERYICD--FWK--VGLKFDRDEGGIITREEIKNKVDQVLGNQDFKAR 423 (466)
Q Consensus 354 G~~s~~ea---l~~GvP~l~~P~~~D---Q~~~a~rv~~--~~G--~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~ 423 (466)
|...-+-. -..-+|+|.+|.... -.+--.-+.+ . | ++...- .+..++..++..|-. ++|++++++
T Consensus 62 G~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~-gvpvatv~I---~~~~nAa~~AaqIl~-~~d~~l~~k 136 (156)
T TIGR01162 62 GGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPS-GVPVATVAI---GNAGNAALLAAQILG-IKDPELAEK 136 (156)
T ss_pred CccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCC-CCeeEEEEc---CChhHHHHHHHHHHc-CCCHHHHHH
Confidence 65432222 233689999997432 1111111222 1 3 333332 245566666666644 357899999
Q ss_pred HHHHHHHHHHH
Q 012314 424 ALELKEKAMSS 434 (466)
Q Consensus 424 a~~~~~~~~~~ 434 (466)
.+..++...+.
T Consensus 137 l~~~r~~~~~~ 147 (156)
T TIGR01162 137 LKEYRENQKEE 147 (156)
T ss_pred HHHHHHHHHHH
Confidence 98888887764
No 409
>PRK06128 oxidoreductase; Provisional
Probab=45.69 E-value=1.3e+02 Score=27.79 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=22.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|.++++. +.|-+- .++|+.|+++|++|.+....
T Consensus 56 k~vlITG-as~gIG--~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 56 RKALITG-ADSGIG--RATAIAFAREGADIALNYLP 88 (300)
T ss_pred CEEEEec-CCCcHH--HHHHHHHHHcCCEEEEEeCC
Confidence 4555553 334333 57899999999999876543
No 410
>PRK10818 cell division inhibitor MinD; Provisional
Probab=45.67 E-value=2.1e+02 Score=25.96 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=27.7
Q ss_pred CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012314 11 APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (466)
Q Consensus 11 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 42 (466)
-+|.|=..-...||..|+++|++|.++=.+..
T Consensus 11 KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 11 KGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 45669999999999999999999999888763
No 411
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=45.63 E-value=2.4e+02 Score=27.19 Aligned_cols=81 Identities=11% Similarity=0.223 Sum_probs=47.8
Q ss_pred CCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCHHHHHH
Q 012314 344 PSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKAR 423 (466)
Q Consensus 344 ~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~r~~ 423 (466)
-+++++.-.+-......-+..-++-++--.+.--+..+.+++.. -++..+|++...+=| ..+|+|
T Consensus 253 ERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~-------------IL~~p~Lra~W~~El--~~Mr~R 317 (396)
T COG1448 253 ERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVAT-------------ILNNPELRAEWEQEL--EEMRQR 317 (396)
T ss_pred hccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHH-------------HhCCHHHHHHHHHHH--HHHHHH
Confidence 45555555554455555555555555555555555555555431 233444544444433 369999
Q ss_pred HHHHHHHHHHHHhcCC
Q 012314 424 ALELKEKAMSSVREGG 439 (466)
Q Consensus 424 a~~~~~~~~~~~~~~g 439 (466)
..+|+..+.+++.+.+
T Consensus 318 i~~mR~~lv~~L~~~~ 333 (396)
T COG1448 318 ILEMRQALVDALKALG 333 (396)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999998887743
No 412
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=45.37 E-value=96 Score=28.01 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=48.4
Q ss_pred CCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCCCccE
Q 012314 31 GFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDC 110 (466)
Q Consensus 31 Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~Dl 110 (466)
.....++.++.+....... ++.....-..-+..+. ....+.++.+.+++ .+..+
T Consensus 149 ~~~~~v~~h~~~~Y~~~~~---------gl~~~~~~~~~~~~~p--------------s~~~l~~l~~~ik~---~~v~~ 202 (256)
T PF01297_consen 149 PGRPVVVYHDAFQYFAKRY---------GLKVIGVIEISPGEEP--------------SPKDLAELIKLIKE---NKVKC 202 (256)
T ss_dssp SGGEEEEEESTTHHHHHHT---------T-EEEEEESSSSSSSS---------------HHHHHHHHHHHHH---TT-SE
T ss_pred cCCeEEEEChHHHHHHHhc---------CCceeeeeccccccCC--------------CHHHHHHHHHHhhh---cCCcE
Confidence 3466677777777766665 5666554311121111 34455566666665 78999
Q ss_pred EEeCCCch--hHHHHHHHcCCceEEeccc
Q 012314 111 FIADGNIG--WSMEIAKKMNVRGAVFWPS 137 (466)
Q Consensus 111 vV~D~~~~--~~~~~A~~lgiP~v~~~~~ 137 (466)
|+++.... .+-.+|+..|+|.+.+.+.
T Consensus 203 i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 203 IFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp EEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred EEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 99998655 5677899999999886543
No 413
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=45.29 E-value=1.1e+02 Score=27.20 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=24.9
Q ss_pred CCccEEEe-CCC-chhHHHHHHHcCCceEEeccchh
Q 012314 106 EKIDCFIA-DGN-IGWSMEIAKKMNVRGAVFWPSSA 139 (466)
Q Consensus 106 ~~~DlvV~-D~~-~~~~~~~A~~lgiP~v~~~~~~~ 139 (466)
..||+||+ |+. ...|..=|.++|||+|.+.-...
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 46898875 443 23788899999999999864433
No 414
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.86 E-value=19 Score=32.91 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=38.4
Q ss_pred hhhcCCCcccceeccCCchhhhhhh----cCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHH
Q 012314 339 RVLNHPSIACFLSHCGWNSTMEGVS----NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQV 414 (466)
Q Consensus 339 ~ll~~~~~~~~i~hgG~~s~~eal~----~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~l 414 (466)
.+...+++ +|+=||-||++.++. .++|++.+-.. .+|-.. .++++++.+.+.++
T Consensus 38 ~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~------~~~~~~~~~~l~~~ 95 (272)
T PRK02231 38 EIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT------DIDPKNAYEQLEAC 95 (272)
T ss_pred HhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc------cCCHHHHHHHHHHH
Confidence 34434555 999999999998754 37899887310 244333 35778888888888
Q ss_pred hc
Q 012314 415 LG 416 (466)
Q Consensus 415 l~ 416 (466)
+.
T Consensus 96 ~~ 97 (272)
T PRK02231 96 LE 97 (272)
T ss_pred Hh
Confidence 86
No 415
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.85 E-value=25 Score=32.80 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=38.8
Q ss_pred cccceeccCCchhhhhhh----cCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 346 IACFLSHCGWNSTMEGVS----NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~----~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
++++|+=||-||++.|.. .++|++.+.. - .+|-.. .+.++++.+++++++++.
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~-------------G-~lGFL~------~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGVNL-------------G-HVGFLA------EAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEEec-------------C-CCceec------cCCHHHHHHHHHHHHcCC
Confidence 444999999999999865 4889998842 1 233333 356888999999998653
No 416
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=44.53 E-value=30 Score=30.64 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 16 HVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 16 H~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
|...|...|++|.++||+|.++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56789999999999999999999873
No 417
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=44.45 E-value=2.3e+02 Score=27.81 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.6
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCceEEe
Q 012314 106 EKIDCFIADGNIGWSMEIAKKMNVRGAVF 134 (466)
Q Consensus 106 ~~~DlvV~D~~~~~~~~~A~~lgiP~v~~ 134 (466)
.+||++|.+.. ...+|+++|||++..
T Consensus 355 ~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 355 KKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred cCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 68999999954 468899999999854
No 418
>PRK06180 short chain dehydrogenase; Provisional
Probab=43.97 E-value=40 Score=30.81 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|.+.+.++++ ++.|.+ -.+++++|+++||+|+.+...
T Consensus 1 ~~~~~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 1 MSSMKTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCCCCEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 4444455555 555655 367888999999999988764
No 419
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=43.96 E-value=1.5e+02 Score=25.39 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecC
Q 012314 19 PLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP 66 (466)
Q Consensus 19 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (466)
-+..+|+.|.+.|+++. ++......+++. ++....+.
T Consensus 12 ~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~---------GI~v~~V~ 48 (187)
T cd01421 12 GLVEFAKELVELGVEIL--STGGTAKFLKEA---------GIPVTDVS 48 (187)
T ss_pred cHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCeEEEhh
Confidence 47899999999999883 555677778776 56655554
No 420
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.86 E-value=26 Score=32.46 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=37.3
Q ss_pred cccceeccCCchhhhhhh----cCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcC
Q 012314 346 IACFLSHCGWNSTMEGVS----NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGN 417 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~----~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 417 (466)
++++|+=||-||++.++. .++|++.+-.. .+|-. ..++++++.+++++++++
T Consensus 64 ~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl------~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 64 ADLAIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFL------TDLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCcc------cccCHHHHHHHHHHHHcC
Confidence 444999999999999974 37898877321 12332 335688999999999864
No 421
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=43.83 E-value=1.9e+02 Score=28.07 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC-CEEEEEeCCc
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHG-FRVTFVNTDY 41 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rG-h~Vt~~~~~~ 41 (466)
+++|+++-.+..| ..+|..|+++| ++|++++-..
T Consensus 1 m~~ilviGaG~Vg-----~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 1 MMKILVIGAGGVG-----SVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CCcEEEECCchhH-----HHHHHHHHhCCCceEEEEeCCH
Confidence 3567777665445 45789999999 9999999863
No 422
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=43.56 E-value=65 Score=25.04 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=35.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
++..+.++..|-....-++..|.++|++|.+.......+.+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~ 44 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVE 44 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHH
Confidence 5777788889999999999999999999999977655444433
No 423
>PTZ00445 p36-lilke protein; Provisional
Probab=43.52 E-value=2.2e+02 Score=25.00 Aligned_cols=109 Identities=11% Similarity=0.029 Sum_probs=59.5
Q ss_pred cCHHH-HHHHHHHHHhCCCEEEEEeCCcchH--------------HHHHhhhcCCCCCCCeE----EEecCCCCCCCCCC
Q 012314 15 GHVIP-LLEFSQCLAKHGFRVTFVNTDYNHK--------------RVVESLQGKNYLGEQIH----LVSIPDGMEPWEDR 75 (466)
Q Consensus 15 GH~~p-~l~la~~L~~rGh~Vt~~~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 75 (466)
+|+.| +..+..+|.+.|..|+++|...... .+....... ..... +.-+|.-+.
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s---~~~~~i~~~~~yyp~~w~----- 145 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKS---KCDFKIKKVYAYYPKFWQ----- 145 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhc---CccceeeeeeeeCCcccC-----
Confidence 45666 8889999999999999999976543 222221100 01111 111222111
Q ss_pred ccHHHHHHHHHHhccHH---H--HHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEecc
Q 012314 76 NDLGKLIEKCLQVMPGK---L--EELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 76 ~~~~~~~~~~~~~~~~~---~--~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~ 136 (466)
....+...-+..=.+. + +.++++..- ..-+++..|- ....+..|+++|+-.+.+..
T Consensus 146 -~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl---~peE~LFIDD-~~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 146 -EPSDYRPLGLDAPMPLDKSYHLKQVCSDFNV---NPDEILFIDD-DMNNCKNALKEGYIALHVTG 206 (219)
T ss_pred -ChhhhhhhcccCCCccchHHHHHHHHHHcCC---CHHHeEeecC-CHHHHHHHHHCCCEEEEcCC
Confidence 1111111111111111 2 555555322 3348899997 57789999999999998753
No 424
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=43.24 E-value=2.3e+02 Score=27.57 Aligned_cols=86 Identities=23% Similarity=0.201 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHH
Q 012314 18 IPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELI 97 (466)
Q Consensus 18 ~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 97 (466)
.....|++.|.+-|-+|..+..........+........ .....+. ..-...+++++
T Consensus 281 ~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~-~~~~v~~----------------------~~~~~~~~~~l 337 (398)
T PF00148_consen 281 DRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEE-SDPEVII----------------------DPDPEEIEELL 337 (398)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHT-TCSEEEE----------------------SCBHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhC-CCcEEEe----------------------CCCHHHHHHHH
Confidence 556788888888898888887765433222110000000 0011111 00123455556
Q ss_pred HHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEec
Q 012314 98 EEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 98 ~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~ 135 (466)
+. .+||+++.+.. ...+|+++++|++.+.
T Consensus 338 ~~------~~pdl~ig~~~---~~~~a~~~~~~~~~~~ 366 (398)
T PF00148_consen 338 EE------LKPDLLIGSSH---ERYLAKKLGIPLIRIG 366 (398)
T ss_dssp HH------HT-SEEEESHH---HHHHHHHTT--EEE-S
T ss_pred Hh------cCCCEEEechh---hHHHHHHhCCCeEEEe
Confidence 65 67999999964 7788899999998864
No 425
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.09 E-value=1.8e+02 Score=25.97 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=23.9
Q ss_pred EEEEEcCCCc-cCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 5 RVLVMPAPAQ-GHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 5 ~il~~~~~~~-GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
|+++++.++. +-+- .++|++|+++|++|.+..-
T Consensus 8 k~~lItGas~~~gIG--~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIA--WGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchH--HHHHHHHHHCCCEEEEecC
Confidence 5677776552 2332 7899999999999988754
No 426
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=43.04 E-value=40 Score=30.14 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=28.8
Q ss_pred CCccCH-HHHHHHHHHHHhC--CCEEEEEeCCcchHHHHH
Q 012314 12 PAQGHV-IPLLEFSQCLAKH--GFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 12 ~~~GH~-~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~ 48 (466)
.|.|+. +-...+++.|.++ ||+|.++.+......+..
T Consensus 7 tGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 7 TGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 343444 6899999999999 999999999876665543
No 427
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=42.89 E-value=97 Score=29.51 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=25.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeCC
Q 012314 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGF-RVTFVNTD 40 (466)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh-~Vt~~~~~ 40 (466)
++.||+++-.++-| ..+|..|+..|. +|+++=.+
T Consensus 23 ~~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeCC
Confidence 45788888877766 456888888997 77777664
No 428
>PRK08226 short chain dehydrogenase; Provisional
Probab=42.73 E-value=1.8e+02 Score=26.09 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=23.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
+.++++ ++.|-+- ..+++.|+++|++|+++....
T Consensus 7 ~~~lIt-G~s~giG--~~la~~l~~~G~~Vv~~~r~~ 40 (263)
T PRK08226 7 KTALIT-GALQGIG--EGIARVFARHGANLILLDISP 40 (263)
T ss_pred CEEEEe-CCCChHH--HHHHHHHHHCCCEEEEecCCH
Confidence 445555 4445444 568899999999998886643
No 429
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=42.71 E-value=42 Score=31.65 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCCccEEEeCCCchh----------HHHHHHHcCCceEEecc
Q 012314 93 LEELIEEINSREDEKIDCFIADGNIGW----------SMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 93 ~~~ll~~l~~~~~~~~DlvV~D~~~~~----------~~~~A~~lgiP~v~~~~ 136 (466)
.+++++.+++ .+||++|+-+.+.. +..+.+.++||.+.-.+
T Consensus 69 ~~~i~~mv~~---~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 69 LKKILEMVKK---LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred HHHHHHHHHh---cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 3444444444 88999999985431 12356789999997544
No 430
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=42.49 E-value=2.5e+02 Score=27.75 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=32.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH--hCCCEEEEEeCCcchH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLA--KHGFRVTFVNTDYNHK 44 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~--~rGh~Vt~~~~~~~~~ 44 (466)
.++|+-.+|.|=..-...||..++ +.|++|.+++.+.+..
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 466666667798888999999987 5689999999987653
No 431
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=42.45 E-value=26 Score=35.72 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=45.2
Q ss_pred chhhhhcCCCcccceec-cCCc-hhhhhhhcCcceeeccccc-chhhh---HHHHHHhhhceeEeecCCCCCcCHHHHHH
Q 012314 336 PQLRVLNHPSIACFLSH-CGWN-STMEGVSNGIPFLCWPYFG-DQFLN---ERYICDFWKVGLKFDRDEGGIITREEIKN 409 (466)
Q Consensus 336 p~~~ll~~~~~~~~i~h-gG~~-s~~eal~~GvP~l~~P~~~-DQ~~~---a~rv~~~~G~G~~l~~~~~~~~~~~~l~~ 409 (466)
|+.+++..+++++|-|- ==|| |-+||+++|||.|..=+.+ -++.+ ... .+ .|+-+.=. ..-+.++..+
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~-~~-~GV~VvdR----~~~n~~e~v~ 535 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDP-EE-YGVYVVDR----RDKNYDESVN 535 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HH-GG-GTEEEE-S----SSS-HHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccC-cC-CcEEEEeC----CCCCHHHHHH
Confidence 45567766777555551 1143 7899999999999886532 11111 111 22 25555443 4455666666
Q ss_pred HHHHHhcC-----H----HHHHHHHHHHHHH
Q 012314 410 KVDQVLGN-----Q----DFKARALELKEKA 431 (466)
Q Consensus 410 ~i~~ll~~-----~----~~r~~a~~~~~~~ 431 (466)
.+.+.|.+ . ..|++|.++++++
T Consensus 536 ~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 536 QLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 66665532 1 4666666665543
No 432
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.42 E-value=30 Score=31.70 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=37.7
Q ss_pred cccceeccCCchhhhhhh-cCcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 346 IACFLSHCGWNSTMEGVS-NGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~-~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
++++|+=||-||++.++. ..+|++.+-. - .+|-. ..++.+++.+++++++++.
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGIN~-------------G-~lGFL------~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGINM-------------G-GLGFL------TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEEEC-------------C-CCccC------cccCHHHHHHHHHHHHcCC
Confidence 344999999999999887 4568877621 0 12222 3467899999999999653
No 433
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=42.32 E-value=42 Score=33.48 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
.+||++...++.+ .+-...++++|.++||+|.++.++.....+..
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhH
Confidence 4677776655444 45689999999999999999999877776654
No 434
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=42.22 E-value=51 Score=30.66 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=32.7
Q ss_pred CCCCEEE-EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012314 1 MSRPRVL-VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (466)
Q Consensus 1 m~~~~il-~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 42 (466)
|+|+|++ |..=+|-|=..-...||-.|++.|++|.++-.++.
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 7777555 44444558888999999999999999999966554
No 435
>PLN02939 transferase, transferring glycosyl groups
Probab=42.20 E-value=45 Score=36.28 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=30.4
Q ss_pred CCEEEEEcC---C---CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 3 RPRVLVMPA---P---AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 3 ~~~il~~~~---~---~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
.+||+|++. | .+|=-...-+|.++|++.||+|.++++..
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 579999873 2 22444567889999999999999999965
No 436
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=42.12 E-value=46 Score=27.59 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 42 (466)
..+|+++-. |.+ ....++.|.+.||+|+++.+...
T Consensus 13 ~~~vlVvGG---G~v--a~rka~~Ll~~ga~V~VIsp~~~ 47 (157)
T PRK06719 13 NKVVVIIGG---GKI--AYRKASGLKDTGAFVTVVSPEIC 47 (157)
T ss_pred CCEEEEECC---CHH--HHHHHHHHHhCCCEEEEEcCccC
Confidence 456666543 333 36788999999999999975443
No 437
>PRK07985 oxidoreductase; Provisional
Probab=42.11 E-value=1.7e+02 Score=27.05 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=22.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
|.++++. +.|-+- .++|++|+++|++|.+...
T Consensus 50 k~vlITG-as~gIG--~aia~~L~~~G~~Vi~~~~ 81 (294)
T PRK07985 50 RKALVTG-GDSGIG--RAAAIAYAREGADVAISYL 81 (294)
T ss_pred CEEEEEC-CCCcHH--HHHHHHHHHCCCEEEEecC
Confidence 4556664 334343 6899999999999987654
No 438
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=42.07 E-value=39 Score=28.45 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=31.7
Q ss_pred CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecC
Q 012314 11 APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIP 66 (466)
Q Consensus 11 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (466)
+++.|++- ..++++|.++||+|+.++-......- . .+++.+..+
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~~~~~~~--~--------~~~~~~~~d 47 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRSPSKAED--S--------PGVEIIQGD 47 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESSGGGHHH--C--------TTEEEEESC
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecCchhccc--c--------cccccceee
Confidence 46677776 45899999999999999987553222 1 478877644
No 439
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=41.96 E-value=1.8e+02 Score=25.54 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=22.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
+++++ ++.|++- ..+++.|+++|++|+.+..
T Consensus 2 ~~lIt-G~sg~iG--~~la~~l~~~G~~v~~~~r 32 (242)
T TIGR01829 2 IALVT-GGMGGIG--TAICQRLAKDGYRVAANCG 32 (242)
T ss_pred EEEEE-CCCChHH--HHHHHHHHHCCCEEEEEeC
Confidence 34444 5567764 5678999999999988765
No 440
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=41.89 E-value=40 Score=26.96 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=26.7
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 15 GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
-.+--.+-++..|.++||+|++++.+.....++-+
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 33445678899999999999999998777766554
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=41.72 E-value=88 Score=26.36 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=35.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
+++.-.||.|=..-.+.++.+.++.|..|.+++.....+.+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHH
Confidence 56677788888888899999999999999999998766655443
No 442
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.50 E-value=58 Score=28.77 Aligned_cols=37 Identities=19% Similarity=0.066 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
|+.+++++ .++.|++- ..|++.|.++||+|++++...
T Consensus 4 ~~~~~vlI--tGasg~iG--~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 4 LMGRVALV--TGAARGLG--RAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CCCCEEEE--eCCCchHH--HHHHHHHHHCCCeEEEEeCCC
Confidence 33445555 35566654 678899999999997766543
No 443
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=41.09 E-value=41 Score=28.51 Aligned_cols=106 Identities=11% Similarity=0.179 Sum_probs=57.5
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeecccchhhhhcCCCcc
Q 012314 268 PSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIA 347 (466)
Q Consensus 268 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~ 347 (466)
.+.+-.+.+|..+ +.+++.++..|.+++..-... ..... ... ..+.+.+..++|+.+++
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~---------~~~~~--~~~--~~~~~~~l~ell~~aDi- 94 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSP---------KPEEG--ADE--FGVEYVSLDELLAQADI- 94 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSC---------HHHHH--HHH--TTEEESSHHHHHHH-SE-
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccC---------Chhhh--ccc--ccceeeehhhhcchhhh-
Confidence 4668888998765 667777777899877655433 11100 000 12366678889988777
Q ss_pred cceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhce-eEeecCCCCCcCHHHHHHHHH
Q 012314 348 CFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVG-LKFDRDEGGIITREEIKNKVD 412 (466)
Q Consensus 348 ~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G-~~l~~~~~~~~~~~~l~~~i~ 412 (466)
++.|+-.+. ......++..++. ++-| +.++.....-++.+.|.++++
T Consensus 95 -v~~~~plt~----------------~T~~li~~~~l~~-mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 95 -VSLHLPLTP----------------ETRGLINAEFLAK-MKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -EEE-SSSST----------------TTTTSBSHHHHHT-STTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred -hhhhhcccc----------------ccceeeeeeeeec-cccceEEEeccchhhhhhhHHHHHHh
Confidence 887764321 1245556666665 4544 333332234455555555554
No 444
>PRK08862 short chain dehydrogenase; Provisional
Probab=41.04 E-value=2.1e+02 Score=25.18 Aligned_cols=32 Identities=9% Similarity=0.207 Sum_probs=22.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
+.++++.++ +.+ =.++|++|+++|++|.++..
T Consensus 6 k~~lVtGas-~GI--G~aia~~la~~G~~V~~~~r 37 (227)
T PRK08862 6 SIILITSAG-SVL--GRTISCHFARLGATLILCDQ 37 (227)
T ss_pred eEEEEECCc-cHH--HHHHHHHHHHCCCEEEEEcC
Confidence 455555433 344 46789999999999988754
No 445
>PRK08589 short chain dehydrogenase; Validated
Probab=40.95 E-value=2e+02 Score=26.02 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=24.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|.++++ ++.|.+- .++|+.|+++|++|.++...
T Consensus 7 k~vlIt-Gas~gIG--~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 7 KVAVIT-GASTGIG--QASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CEEEEE-CCCchHH--HHHHHHHHHCCCEEEEEeCc
Confidence 456665 3344443 68899999999999998765
No 446
>PRK05693 short chain dehydrogenase; Provisional
Probab=40.71 E-value=2e+02 Score=26.08 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=22.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
.++++ ++.|-+- ..+++.|+++|++|+.++..
T Consensus 3 ~vlIt-GasggiG--~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 3 VVLIT-GCSSGIG--RALADAFKAAGYEVWATARK 34 (274)
T ss_pred EEEEe-cCCChHH--HHHHHHHHHCCCEEEEEeCC
Confidence 44555 3444443 57889999999999887653
No 447
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=40.42 E-value=2.2e+02 Score=25.18 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=21.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
|.++++. +.|-+ =..+|+.|+++|++|++...
T Consensus 7 ~~~lItG-~s~~i--G~~la~~l~~~g~~v~~~~~ 38 (247)
T PRK12935 7 KVAIVTG-GAKGI--GKAITVALAQEGAKVVINYN 38 (247)
T ss_pred CEEEEEC-CCCHH--HHHHHHHHHHcCCEEEEEcC
Confidence 4555553 34433 36789999999999986543
No 448
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.38 E-value=36 Score=31.07 Aligned_cols=53 Identities=8% Similarity=0.122 Sum_probs=36.4
Q ss_pred ccceeccCCchhhhhhhc-----CcceeecccccchhhhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 347 ACFLSHCGWNSTMEGVSN-----GIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 347 ~~~i~hgG~~s~~eal~~-----GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
+++|+=||-||++.++.. .+|++.+-..+ .+|-. ..++.+++.++++++++++
T Consensus 41 D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL------~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 41 NIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY------CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred cEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc------ccCCHHHHHHHHHHHHcCC
Confidence 349999999999999874 56777663200 12222 3467788999999888653
No 449
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=40.38 E-value=1.1e+02 Score=27.11 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=35.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVE 48 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 48 (466)
-+++.-.++.|-..-...++.+.+++|..|.+++.......+.+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 45666777889999899998888889999999999866555444
No 450
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=40.30 E-value=2.6e+02 Score=24.72 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=30.9
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012314 6 VLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNH 43 (466)
Q Consensus 6 il~~~-~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 43 (466)
|.|.. -||.|=..-...||..|+++|++|.++=.+...
T Consensus 4 I~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~ 42 (246)
T TIGR03371 4 IAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN 42 (246)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 44444 456699999999999999999999999887643
No 451
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=40.17 E-value=2.2e+02 Score=23.76 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcc
Q 012314 20 LLEFSQCLAKHGFRVTFVNTDYN 42 (466)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~ 42 (466)
..++.+.|+++|+.+.++|...+
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~ 114 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKN 114 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCcc
Confidence 56778889999999999986543
No 452
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=39.89 E-value=2.4e+02 Score=24.19 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=22.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCC--EEEEEeCCc
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGF--RVTFVNTDY 41 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh--~Vt~~~~~~ 41 (466)
+||+++..+..+-+ .++.+.+.+.++ +|.++.++.
T Consensus 1 ~riail~sg~gs~~---~~ll~~~~~~~l~~~I~~vi~~~ 37 (190)
T TIGR00639 1 KRIVVLISGNGSNL---QAIIDACKEGKIPASVVLVISNK 37 (190)
T ss_pred CeEEEEEcCCChhH---HHHHHHHHcCCCCceEEEEEECC
Confidence 46888886655544 466677776655 677655543
No 453
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=39.85 E-value=55 Score=27.49 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=25.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
..+|++++.++. .=.=-+.+|+.|+++|++|+++..
T Consensus 25 ~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 25 GPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp T-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 467888886653 112367889999999999999443
No 454
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=39.82 E-value=1.4e+02 Score=25.78 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHHHH
Q 012314 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEE 99 (466)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 99 (466)
...+.+.|+++|+.+.++|.... ..+....... ....-+..+.-.+.... ...+ ...+..+++.
T Consensus 90 ~~~~L~~l~~~g~~~~i~S~~~~-~~~~~~l~~~-~l~~~f~~~~~~~~~~~--~Kp~------------p~~~~~~~~~ 153 (213)
T TIGR01449 90 VEATLGALRAKGLRLGLVTNKPT-PLARPLLELL-GLAKYFSVLIGGDSLAQ--RKPH------------PDPLLLAAER 153 (213)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCH-HHHHHHHHHc-CcHhhCcEEEecCCCCC--CCCC------------hHHHHHHHHH
Confidence 55677888899999999998643 2222221100 00001111111111100 1111 2234444444
Q ss_pred HhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEec
Q 012314 100 INSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 100 l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~ 135 (466)
+.- .+-++++.+- .......|+..|++++.+.
T Consensus 154 ~~~---~~~~~~~igD-s~~d~~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 154 LGV---APQQMVYVGD-SRVDIQAARAAGCPSVLLT 185 (213)
T ss_pred cCC---ChhHeEEeCC-CHHHHHHHHHCCCeEEEEc
Confidence 332 2234555544 3678999999999999874
No 455
>PRK06179 short chain dehydrogenase; Provisional
Probab=39.52 E-value=51 Score=29.85 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=26.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|...+.++++ ++.|-+- .+++++|+++|++|+.++..
T Consensus 1 m~~~~~vlVt-Gasg~iG--~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 1 MSNSKVALVT-GASSGIG--RATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCCCCEEEEe-cCCCHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 5544556666 3445553 68899999999999888764
No 456
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=39.49 E-value=41 Score=31.06 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=46.7
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeecccchhhhhcCCCcccceeccCCchhh
Q 012314 280 TILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTM 359 (466)
Q Consensus 280 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~p~~~ll~~~~~~~~i~hgG~~s~~ 359 (466)
+..+.+..+.+.+|+.+...+.||...++.. .. ++.++++...+-.+|.. ||-+.-..+++
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g-------a~----------rlL~~ld~~~~~~~pK~--~iGySDiTaL~ 104 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGYG-------AN----------RLLPYLDYDLIRANPKI--FVGYSDITALH 104 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcCC-------HH----------HhhhhCCHHHHhhCCeE--EEEecHHHHHH
Confidence 3446778999999999999999999987621 01 13444555555455555 66555555555
Q ss_pred hhhhc--Ccceeeccc
Q 012314 360 EGVSN--GIPFLCWPY 373 (466)
Q Consensus 360 eal~~--GvP~l~~P~ 373 (466)
-+++. |++.+-=|.
T Consensus 105 ~~l~~~~g~~t~hGp~ 120 (282)
T cd07025 105 LALYAKTGLVTFHGPM 120 (282)
T ss_pred HHHHHhcCceEEECcc
Confidence 55542 555555553
No 457
>PRK12939 short chain dehydrogenase; Provisional
Probab=39.47 E-value=2.2e+02 Score=25.05 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=21.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
.++++ ++.|.+- ..+++.|.++||+|.++...
T Consensus 9 ~vlIt-Ga~g~iG--~~la~~l~~~G~~v~~~~r~ 40 (250)
T PRK12939 9 RALVT-GAARGLG--AAFAEALAEAGATVAFNDGL 40 (250)
T ss_pred EEEEe-CCCChHH--HHHHHHHHHcCCEEEEEeCC
Confidence 33444 3445443 67889999999999888553
No 458
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=39.42 E-value=2.6e+02 Score=25.14 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=24.1
Q ss_pred EEEEEcCCC-ccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 5 RVLVMPAPA-QGHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 5 ~il~~~~~~-~GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
|+++++..+ .+-+- .++|++|+++|++|.+...
T Consensus 7 k~~lItGas~~~GIG--~aia~~la~~G~~v~~~~~ 40 (258)
T PRK07370 7 KKALVTGIANNRSIA--WGIAQQLHAAGAELGITYL 40 (258)
T ss_pred cEEEEeCCCCCCchH--HHHHHHHHHCCCEEEEEec
Confidence 677777653 24443 6889999999999987643
No 459
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=39.39 E-value=2.3e+02 Score=25.09 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=20.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
.++++ ++.|-+- ..+++.|+++|++|.++..
T Consensus 4 ~ilIt-Gas~giG--~~la~~l~~~g~~v~~~~~ 34 (248)
T PRK06947 4 VVLIT-GASRGIG--RATAVLAAARGWSVGINYA 34 (248)
T ss_pred EEEEe-CCCCcHH--HHHHHHHHHCCCEEEEEeC
Confidence 34444 3344443 6689999999999877643
No 460
>PRK05380 pyrG CTP synthetase; Validated
Probab=39.38 E-value=1.6e+02 Score=29.79 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=34.6
Q ss_pred CEEEEEcCC---CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012314 4 PRVLVMPAP---AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKR 45 (466)
Q Consensus 4 ~~il~~~~~---~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (466)
+|.+|++.+ +-|-=.-...|+..|..||++|+..--+++.+.
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNv 46 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINV 46 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccc
Confidence 578888866 446667789999999999999999999887553
No 461
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=39.36 E-value=90 Score=27.41 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=53.5
Q ss_pred CccCHHHHH---HHHHHHHhCCCEEEEEeCCc-chHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHh
Q 012314 13 AQGHVIPLL---EFSQCLAKHGFRVTFVNTDY-NHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQV 88 (466)
Q Consensus 13 ~~GH~~p~l---~la~~L~~rGh~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (466)
--||+.+++ .+++-|..+|++|.+++.-. ....+..... . ...+..++.+.
T Consensus 35 HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~-------~--------------~g~~p~e~~~~---- 89 (213)
T cd00672 35 HIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAR-------E--------------EGLSWKEVADY---- 89 (213)
T ss_pred ccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHH-------H--------------cCCCHHHHHHH----
Confidence 449988754 45777778999999998853 3333333210 0 11223333333
Q ss_pred ccHHHHHHHHHHhcCCCCCccEEEeCCCchhHHHHHHHcCCce
Q 012314 89 MPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRG 131 (466)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~ 131 (466)
....+++.++.+.= ..||..+-.-+.-|+..+.+.+|-|+
T Consensus 90 ~~~~f~~~~~~l~i---~~~d~~~rtWh~ec~am~~~~lg~~~ 129 (213)
T cd00672 90 YTKEFFEDMKALNV---LPPDVVPRVWHIECSAMAMKYLGETF 129 (213)
T ss_pred HHHHHHHHHHHcCC---CCCCcceeehhHHHHHHHHHHcCCCc
Confidence 34456666666553 34476666655558888888888655
No 462
>PRK05993 short chain dehydrogenase; Provisional
Probab=39.28 E-value=47 Score=30.39 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|.+.+.++++.+ .|-+- .++|++|+++|++|.++...
T Consensus 1 m~~~k~vlItGa-sggiG--~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 1 MDMKRSILITGC-SSGIG--AYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCCCCEEEEeCC-CcHHH--HHHHHHHHHCCCEEEEEECC
Confidence 666666666643 33333 56789999999999888654
No 463
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=39.24 E-value=46 Score=28.21 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=21.5
Q ss_pred CCccEEEeCCCchh--HHHHHHHcCCceEEec
Q 012314 106 EKIDCFIADGNIGW--SMEIAKKMNVRGAVFW 135 (466)
Q Consensus 106 ~~~DlvV~D~~~~~--~~~~A~~lgiP~v~~~ 135 (466)
.+||+||+...... ....-+..|||++.+.
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 58999998654332 4445578899998875
No 464
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=39.08 E-value=1.8e+02 Score=22.35 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHH
Q 012314 16 HVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEE 95 (466)
Q Consensus 16 H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (466)
+=.-++.+|+.|.+.||++ ++++.....+++. ++....+...-.. ..+.+.+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~~~~-----------------g~~~i~~ 61 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADA---------GIPVRAVSKRHED-----------------GEPTVDA 61 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHc---------CCceEEEEecCCC-----------------CCcHHHH
Confidence 4456889999999999988 3555566667664 4554443211000 1223333
Q ss_pred HHHHHhcCCCCCccEEEeCC--Cc--------hhHHHHHHHcCCceEEe
Q 012314 96 LIEEINSREDEKIDCFIADG--NI--------GWSMEIAKKMNVRGAVF 134 (466)
Q Consensus 96 ll~~l~~~~~~~~DlvV~D~--~~--------~~~~~~A~~lgiP~v~~ 134 (466)
+++. . .++|+||.-+ .. +.-..+|...+||++.-
T Consensus 62 ~i~~---~--g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 62 AIAE---K--GKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred HHhC---C--CCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 3332 0 3689999843 21 12334688889999873
No 465
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=39.05 E-value=4e+02 Score=26.44 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=28.2
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 5 RVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 5 ~il~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
++++.... +.|=..-.+.|++.|.++|.+|.-+-+.+
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gp 40 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGP 40 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCC
Confidence 45555544 44999999999999999999997666543
No 466
>PHA02754 hypothetical protein; Provisional
Probab=39.04 E-value=49 Score=21.75 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=19.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHH
Q 012314 410 KVDQVLGNQDFKARALELKEKAMSS 434 (466)
Q Consensus 410 ~i~~ll~~~~~r~~a~~~~~~~~~~ 434 (466)
.|.+++.+.+|++.++++++.+.++
T Consensus 6 Ei~k~i~eK~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 6 EIPKAIMEKDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 3445555778999999999998764
No 467
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=38.94 E-value=2e+02 Score=26.14 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=34.5
Q ss_pred chhhhhcCCCcccce--e--ccCCchhhhhhhcCcceeeccccc--chhhhHHHHHHhhhceeEeec
Q 012314 336 PQLRVLNHPSIACFL--S--HCGWNSTMEGVSNGIPFLCWPYFG--DQFLNERYICDFWKVGLKFDR 396 (466)
Q Consensus 336 p~~~ll~~~~~~~~i--~--hgG~~s~~eal~~GvP~l~~P~~~--DQ~~~a~rv~~~~G~G~~l~~ 396 (466)
+..+++..+++ +| | +....-+..|+.+|+|+++-|... +|...-..++ . ++++.+.+
T Consensus 53 dl~~ll~~~Dv--Vid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa-~-~~~v~~s~ 115 (257)
T PRK00048 53 DLEAVLADADV--LIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAA-K-KIPVVIAP 115 (257)
T ss_pred CHHHhccCCCE--EEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh-c-CCCEEEEC
Confidence 44556655555 55 2 222445677899999999887654 3433333332 3 88888865
No 468
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=38.67 E-value=57 Score=30.96 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCCc-cC---HHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 1 MSRPRVLVMPAPAQ-GH---VIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 1 m~~~~il~~~~~~~-GH---~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
|+|+||+++..+.. =| +.--..++++|.+.||+|+.+-...
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~ 45 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITK 45 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECC
Confidence 88889998884433 23 3346789999999999999887654
No 469
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=38.50 E-value=3.2e+02 Score=25.19 Aligned_cols=113 Identities=15% Similarity=0.226 Sum_probs=54.3
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHH----HhCCCCEEEEEcCCCCCCCCCCCchhHHHHhcCCceeeccc-ch--hhhh
Q 012314 269 SSVVYVSFGSFTILDQVQFQELALGL----ELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWA-PQ--LRVL 341 (466)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~a~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~-p~--~~ll 341 (466)
++.|.|++-.......+..+.+++++ ++.+.++++.--.. .......+.+.++.+.+..+.... |+ ..++
T Consensus 172 ~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~---~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i 248 (298)
T TIGR03609 172 EPVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQ---PQDLPLARALRDQLLGPAEVLSPLDPEELLGLF 248 (298)
T ss_pred CCeEEEEECCCCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCc---chhHHHHHHHHHhcCCCcEEEecCCHHHHHHHH
Confidence 45778877542222333333433333 44578776554221 000111123333333333333222 22 2467
Q ss_pred cCCCcccceeccCCchhhhhhhcCcceeecccccchhhhHHHHHHhhhce
Q 012314 342 NHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVG 391 (466)
Q Consensus 342 ~~~~~~~~i~hgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G 391 (466)
+++++ +|+.==+ +..-|+.+|+|.+++. .| +....-+.+ +|+.
T Consensus 249 ~~~~~--vI~~RlH-~~I~A~~~gvP~i~i~--y~-~K~~~~~~~-~g~~ 291 (298)
T TIGR03609 249 ASARL--VIGMRLH-ALILAAAAGVPFVALS--YD-PKVRAFAAD-AGVP 291 (298)
T ss_pred hhCCE--EEEechH-HHHHHHHcCCCEEEee--cc-HHHHHHHHH-hCCC
Confidence 66665 8883222 3667889999999884 33 333333444 4543
No 470
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=38.45 E-value=1.7e+02 Score=29.66 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=33.2
Q ss_pred EEEEEcCC---CccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012314 5 RVLVMPAP---AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHK 44 (466)
Q Consensus 5 ~il~~~~~---~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 44 (466)
|.+|++.+ +-|-=.-...|+..|..||++|+.+-.+++.+
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYIN 44 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccc
Confidence 67888865 44666778999999999999999999988755
No 471
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=38.29 E-value=1.7e+02 Score=25.20 Aligned_cols=98 Identities=13% Similarity=0.223 Sum_probs=50.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchH--HHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHH
Q 012314 20 LLEFSQCLAKHGFRVTFVNTDYNHK--RVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELI 97 (466)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 97 (466)
+..+.+.|+++|+.+.++|...... ........ ....-+..+..+..... ...+ ...+..++
T Consensus 99 ~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~--~l~~~fd~v~~s~~~~~--~KP~------------p~~~~~~~ 162 (211)
T TIGR02247 99 MMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPG--DIMALFDAVVESCLEGL--RKPD------------PRIYQLML 162 (211)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhh--hhHhhCCEEEEeeecCC--CCCC------------HHHHHHHH
Confidence 6678889999999999998754321 11111000 00011222211111100 0111 12333444
Q ss_pred HHHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEeccc
Q 012314 98 EEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPS 137 (466)
Q Consensus 98 ~~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~~ 137 (466)
+.+.- .+-+++++|- .......|+..|+.+|.+...
T Consensus 163 ~~~g~---~~~~~l~i~D-~~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 163 ERLGV---APEECVFLDD-LGSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred HHcCC---CHHHeEEEcC-CHHHHHHHHHcCCEEEEECCH
Confidence 44322 2346777775 567889999999999987643
No 472
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=38.18 E-value=2.9e+02 Score=27.42 Aligned_cols=35 Identities=14% Similarity=0.334 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012314 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYN 42 (466)
Q Consensus 3 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 42 (466)
++|||++- .|.+ .+.+++++.+.|++|+.+.+...
T Consensus 2 ~k~iLi~g---~g~~--a~~i~~aa~~~G~~vv~~~~~~d 36 (451)
T PRK08591 2 FDKILIAN---RGEI--ALRIIRACKELGIKTVAVHSTAD 36 (451)
T ss_pred cceEEEEC---CCHH--HHHHHHHHHHcCCeEEEEcChhh
Confidence 45688773 3333 47888899999999999877543
No 473
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=38.17 E-value=64 Score=27.43 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCCCccEEEeCCC--chhHHHHHHHcCCceEEe
Q 012314 95 ELIEEINSREDEKIDCFIADGN--IGWSMEIAKKMNVRGAVF 134 (466)
Q Consensus 95 ~ll~~l~~~~~~~~DlvV~D~~--~~~~~~~A~~lgiP~v~~ 134 (466)
.+.+..+. .++|.||+=.. .+.|..+|..+|+|+|..
T Consensus 44 ~~~~~~~~---~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD---DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc---cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 44444444 67999996542 447999999999999984
No 474
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=37.71 E-value=3.9e+02 Score=25.87 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=24.0
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 4 PRVLVMP-APAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 4 ~~il~~~-~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
++|+++- .|.-|. .+|..|.++||+|+++...
T Consensus 99 ~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 5677775 444453 5789999999999999864
No 475
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=37.61 E-value=45 Score=29.67 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=21.8
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 8 VMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 8 ~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
+++..+.|-+- .+||++|.++||+|+++...
T Consensus 19 ~itN~SSG~iG--~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 19 GITNHSTGQLG--KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred eecCccchHHH--HHHHHHHHhCCCEEEEEECc
Confidence 34444444333 57889999999999999754
No 476
>PRK13604 luxD acyl transferase; Provisional
Probab=37.27 E-value=71 Score=29.85 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=28.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~ 38 (466)
...++++.+..++-.-+..+|+.|+++|+.|.-+=
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 35677777777777679999999999999887764
No 477
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=37.16 E-value=4.1e+02 Score=26.96 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=36.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q 012314 5 RVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVES 49 (466)
Q Consensus 5 ~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 49 (466)
-+++...++.|-..-+..++.+.+..|..|.+++.....+.+...
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~ 319 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRN 319 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHH
Confidence 456677778899999999999999999999999998766655443
No 478
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=37.01 E-value=2.3e+02 Score=23.03 Aligned_cols=95 Identities=13% Similarity=0.181 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHHHH
Q 012314 20 LLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIEE 99 (466)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 99 (466)
...+.+.|.++|+.+.++|...... +....... ....-+..+...+..... +-....++.+++.
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~-~~~~l~~~-~~~~~f~~i~~~~~~~~~--------------Kp~~~~~~~~~~~ 145 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRER-IERVLERL-GLDDYFDEIISSDDVGSR--------------KPDPDAYRRALEK 145 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHH-HHHHHHHT-THGGGCSEEEEGGGSSSS--------------TTSHHHHHHHHHH
T ss_pred hhhhhhhcccccceeEEeecCCccc-cccccccc-ccccccccccccchhhhh--------------hhHHHHHHHHHHH
Confidence 5667888988999999999975432 22211100 000012222211111111 1112334555555
Q ss_pred HhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEe
Q 012314 100 INSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVF 134 (466)
Q Consensus 100 l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~ 134 (466)
+.- .+-+++++|-.. .-...|+..|+++|.+
T Consensus 146 ~~~---~p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 146 LGI---PPEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HTS---SGGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred cCC---CcceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 432 345787777645 8999999999999864
No 479
>PLN02240 UDP-glucose 4-epimerase
Probab=36.85 E-value=56 Score=31.04 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
|+.++|++ .++.|.+- ..|++.|.++||+|+.+..
T Consensus 3 ~~~~~vlI--tGatG~iG--~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILV--TGGAGYIG--SHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCCEEEE--ECCCChHH--HHHHHHHHHCCCEEEEEeC
Confidence 34445554 36667665 4568999999999999864
No 480
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=36.81 E-value=1.6e+02 Score=21.42 Aligned_cols=58 Identities=9% Similarity=0.085 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHhcccCCCC
Q 012314 405 EEIKNKVDQVLGNQDFKARALELKEKAMSSVREGGSS-YKTFQNFLQWVKTNALAHNSP 462 (466)
Q Consensus 405 ~~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g~~-~~~~~~~v~~~~~~~~~~~~~ 462 (466)
++....++++.+|...-+|.++.++...+.+...+-+ .......+..+++.+.+-+-|
T Consensus 9 ~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~e~~~~~vRaataIs~LdeIsnDPNmP 67 (85)
T PF03685_consen 9 KQAIQMLERIINDTSVPRNIRRAAEEAKEILNNEEESPGVRAATAISILDEISNDPNMP 67 (85)
T ss_dssp HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-TTS-HHHHHHHHHHHHHHHCT-TTS-
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCcchhHhHHHHHHHHHHhhcCCCCc
Confidence 3455566677777766666666666655555545554 555555666666665554433
No 481
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=36.65 E-value=3.3e+02 Score=24.74 Aligned_cols=45 Identities=18% Similarity=0.097 Sum_probs=36.0
Q ss_pred CCEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012314 3 RPRVLVMPAP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVV 47 (466)
Q Consensus 3 ~~~il~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 47 (466)
..|..|+-.- |-|-..-...||-.|+.-+|.|.++++++.++.-.
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSD 63 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSD 63 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHH
Confidence 3567777644 44888889999999999999999999998766443
No 482
>PRK07308 flavodoxin; Validated
Probab=36.64 E-value=51 Score=26.77 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCCccCHHH-HHHHHHHHHhCCCEEEEEeCC
Q 012314 1 MSRPRVLVMPAPAQGHVIP-LLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p-~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|++.+|++.+ .+||.-- ...|++.|.++|+.|.+.-..
T Consensus 1 m~~~~IvY~S--~tGnTe~iA~~ia~~l~~~g~~~~~~~~~ 39 (146)
T PRK07308 1 MALAKIVYAS--MTGNTEEIADIVADKLRELGHDVDVDECT 39 (146)
T ss_pred CceEEEEEEC--CCchHHHHHHHHHHHHHhCCCceEEEecc
Confidence 7766666644 6677776 556788898899998876543
No 483
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=36.57 E-value=2.3e+02 Score=24.18 Aligned_cols=99 Identities=8% Similarity=0.098 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcchHHHHHhhhcCCCCCCCeEEEecCCCCCCCCCCccHHHHHHHHHHhccHHHHHHHH
Q 012314 19 PLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHLVSIPDGMEPWEDRNDLGKLIEKCLQVMPGKLEELIE 98 (466)
Q Consensus 19 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 98 (466)
.+..+.+.|+++|+.+.++|...... +.............+..+...+..... ..+ ...+..+++
T Consensus 88 g~~e~L~~l~~~g~~~~i~Sn~~~~~-~~~~~~~~~~l~~~fd~v~~s~~~~~~--KP~------------p~~~~~~~~ 152 (199)
T PRK09456 88 EVIAIMHKLREQGHRVVVLSNTNRLH-TTFWPEEYPEVRAAADHIYLSQDLGMR--KPE------------ARIYQHVLQ 152 (199)
T ss_pred HHHHHHHHHHhCCCcEEEEcCCchhh-HHHHHhhchhHHHhcCEEEEecccCCC--CCC------------HHHHHHHHH
Confidence 36788899999999999998864322 111100000000112222222111111 111 223344444
Q ss_pred HHhcCCCCCccEEEeCCCchhHHHHHHHcCCceEEecc
Q 012314 99 EINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWP 136 (466)
Q Consensus 99 ~l~~~~~~~~DlvV~D~~~~~~~~~A~~lgiP~v~~~~ 136 (466)
.+.- .+=++++.|- .......|+..|+.++.+..
T Consensus 153 ~~~~---~p~~~l~vgD-~~~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 153 AEGF---SAADAVFFDD-NADNIEAANALGITSILVTD 186 (199)
T ss_pred HcCC---ChhHeEEeCC-CHHHHHHHHHcCCEEEEecC
Confidence 4332 2336766665 35679999999999988654
No 484
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=36.40 E-value=2.5e+02 Score=23.34 Aligned_cols=30 Identities=20% Similarity=0.052 Sum_probs=24.7
Q ss_pred CCccEEEeCCCch---hHHHHHHHcCCceEEec
Q 012314 106 EKIDCFIADGNIG---WSMEIAKKMNVRGAVFW 135 (466)
Q Consensus 106 ~~~DlvV~D~~~~---~~~~~A~~lgiP~v~~~ 135 (466)
.+||+|++-.... .+..+|.++|.|++.-+
T Consensus 82 ~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv 114 (168)
T cd01715 82 EKPSHILAGATSFGKDLAPRVAAKLDVGLISDV 114 (168)
T ss_pred cCCCEEEECCCccccchHHHHHHHhCCCceeeE
Confidence 5699999887544 68889999999998754
No 485
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=36.27 E-value=62 Score=27.36 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=27.0
Q ss_pred ccCHHH-HHHHHHHHHh-CCCEEEEEeCCcchHHHH
Q 012314 14 QGHVIP-LLEFSQCLAK-HGFRVTFVNTDYNHKRVV 47 (466)
Q Consensus 14 ~GH~~p-~l~la~~L~~-rGh~Vt~~~~~~~~~~~~ 47 (466)
.||... ...+.++|.+ +||+|.++.++.....+.
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 477765 8899999984 699999999987766554
No 486
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=36.14 E-value=1.4e+02 Score=29.20 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=30.3
Q ss_pred CEEEEEcCC---CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012314 4 PRVLVMPAP---AQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKR 45 (466)
Q Consensus 4 ~~il~~~~~---~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~ 45 (466)
||.++++.+ |-|-=.-...++-.|+..|++||-+-.+++.+.
T Consensus 1 MKYVlVtGGVISGiGKGv~aSSiG~lLKs~Gl~VTsIKIDPYlN~ 45 (585)
T KOG2387|consen 1 MKYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTSIKIDPYLNI 45 (585)
T ss_pred CeEEEEeCcEeecccCceeehhHHHHHHhcCceeEEEEeccceec
Confidence 356666644 334444567888999999999999999887553
No 487
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=36.06 E-value=2.4e+02 Score=27.97 Aligned_cols=32 Identities=9% Similarity=0.179 Sum_probs=24.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
+|||++-.+++.| +|+..|++.|++|.++...
T Consensus 3 ~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~~ 34 (435)
T PRK06395 3 MKVMLVGSGGRED-----AIARAIKRSGAILFSVIGH 34 (435)
T ss_pred eEEEEECCcHHHH-----HHHHHHHhCCCeEEEEECC
Confidence 5799987777666 5688888889888777553
No 488
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.06 E-value=3.2e+02 Score=25.23 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCCccCHHHHHHHHHHHHh-CCCEEEEEeCCc
Q 012314 11 APAQGHVIPLLEFSQCLAK-HGFRVTFVNTDY 41 (466)
Q Consensus 11 ~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~ 41 (466)
.--+|++-..=.||+.|++ .||.|.+-+.+.
T Consensus 11 iDNyGDIGV~wRLARql~re~G~~VrLWvDd~ 42 (370)
T COG4394 11 IDNYGDIGVAWRLARQLKREHGWQVRLWVDDK 42 (370)
T ss_pred hcccchhHHHHHHHHHHHHHhCceeeeecCCH
Confidence 3457999999999999995 799999998863
No 489
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=35.99 E-value=47 Score=33.21 Aligned_cols=52 Identities=13% Similarity=0.205 Sum_probs=38.7
Q ss_pred cccceeccCCchhhhhhhc----CcceeecccccchhhhHHHHHHhhh-ceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 346 IACFLSHCGWNSTMEGVSN----GIPFLCWPYFGDQFLNERYICDFWK-VGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 346 ~~~~i~hgG~~s~~eal~~----GvP~l~~P~~~DQ~~~a~rv~~~~G-~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
++++|+=||-||++.|... ++|++.+- +| +|-. ..++.+++.++|+++++++
T Consensus 263 ~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN---------------~G~LGFL------t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 263 VDLVITLGGDGTVLWAASMFKGPVPPVVPFS---------------MGSLGFM------TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEe---------------CCCccee------cccCHHHHHHHHHHHHcCC
Confidence 4559999999999999763 57888772 23 4443 3467899999999998654
No 490
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=35.99 E-value=65 Score=29.95 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCCCc-cCHH---HHHHHHHHHHhCCCEEEEEeCC
Q 012314 1 MSRPRVLVMPAPAQ-GHVI---PLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 1 m~~~~il~~~~~~~-GH~~---p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
|.+++|++++.+.. =|-. -...+.++|.++||+|.++...
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 44558888884422 3444 5688999999999999998654
No 491
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=35.93 E-value=65 Score=29.06 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=26.9
Q ss_pred CEEEEEcCCCc--cCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 4 PRVLVMPAPAQ--GHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 4 ~~il~~~~~~~--GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
.+|++++.+|. |+ -+.+|+.|+++|++|+++..
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEEc
Confidence 47899987765 55 45789999999999999984
No 492
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=35.89 E-value=77 Score=28.43 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=35.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012314 1 MSRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRV 46 (466)
Q Consensus 1 m~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~ 46 (466)
|.+.+++.-.-+|.|=......+|..|+++|++|.++-.++....+
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~ 46 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATF 46 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchh
Confidence 5655555555667799999999999999999999999777655433
No 493
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=35.88 E-value=67 Score=27.48 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=22.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 4 PRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 4 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
|||.++ |-||+- +.+|..|+++||+|+.+=.+.
T Consensus 1 M~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVI---GLGYVG--LPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCCh
Confidence 455555 556665 778899999999999887754
No 494
>PRK12743 oxidoreductase; Provisional
Probab=35.84 E-value=2.6e+02 Score=24.92 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=21.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012314 6 VLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (466)
Q Consensus 6 il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 39 (466)
.++++. +.|.+- .++++.|+++||+|.++..
T Consensus 4 ~vlItG-as~giG--~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 4 VAIVTA-SDSGIG--KACALLLAQQGFDIGITWH 34 (256)
T ss_pred EEEEEC-CCchHH--HHHHHHHHHCCCEEEEEeC
Confidence 445553 344444 6799999999999987754
No 495
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=35.82 E-value=64 Score=30.75 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCc-cC---HHHHHHHHHHHHhCCCEEEEEeCCc
Q 012314 1 MSRPRVLVMPAPAQ-GH---VIPLLEFSQCLAKHGFRVTFVNTDY 41 (466)
Q Consensus 1 m~~~~il~~~~~~~-GH---~~p~l~la~~L~~rGh~Vt~~~~~~ 41 (466)
|.|+||+++..+-. =| +.....++++|.+.||+|..+-...
T Consensus 1 m~~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~ 45 (343)
T PRK14568 1 MNRIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITK 45 (343)
T ss_pred CCCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECC
Confidence 77889998885533 23 3456788999999999999886544
No 496
>PRK04330 hypothetical protein; Provisional
Probab=35.80 E-value=1.7e+02 Score=21.51 Aligned_cols=57 Identities=7% Similarity=0.046 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHhcccCCCC
Q 012314 406 EIKNKVDQVLGNQDFKARALELKEKAMSSVREGG-SSYKTFQNFLQWVKTNALAHNSP 462 (466)
Q Consensus 406 ~l~~~i~~ll~~~~~r~~a~~~~~~~~~~~~~~g-~~~~~~~~~v~~~~~~~~~~~~~ 462 (466)
+....++++.+|...-+|.++.+....+.+...+ +-.......+..+++.+.+-+-|
T Consensus 13 ~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~~~~vRaA~AIs~LdeIs~DPNmP 70 (88)
T PRK04330 13 QAIQMLEEIINDTSVPRNIRRAATEAKEILLNEEESPGVRAATAISILDEISNDPNMP 70 (88)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHhhcCCCCC
Confidence 3344455666676544444444444444433344 33555556666666666655554
No 497
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=35.64 E-value=1.8e+02 Score=29.46 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=28.8
Q ss_pred CCccEEE----eCCCchhHHHHHHHcCCceEEeccchh
Q 012314 106 EKIDCFI----ADGNIGWSMEIAKKMNVRGAVFWPSSA 139 (466)
Q Consensus 106 ~~~DlvV----~D~~~~~~~~~A~~lgiP~v~~~~~~~ 139 (466)
..+|-+| ||=..+..+..|.++++|.|++..++.
T Consensus 88 ~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGpm 125 (535)
T TIGR00110 88 HRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGPM 125 (535)
T ss_pred CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCc
Confidence 6789888 788788888899999999999877654
No 498
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=35.33 E-value=62 Score=28.98 Aligned_cols=39 Identities=31% Similarity=0.174 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012314 2 SRPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (466)
Q Consensus 2 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 40 (466)
..++|+++...-.==..-+-.....|+++||+|++++-.
T Consensus 9 ~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 9 DPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred cCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 345666665433333344667778889999999999865
No 499
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=35.19 E-value=72 Score=30.66 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=36.5
Q ss_pred ceeccCCchhhhhhhcCcceee--cccccchh------hhHHHHHHhhhceeEeecCCCCCcCHHHHHHHHHHHhcCH
Q 012314 349 FLSHCGWNSTMEGVSNGIPFLC--WPYFGDQF------LNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQ 418 (466)
Q Consensus 349 ~i~hgG~~s~~eal~~GvP~l~--~P~~~DQ~------~~a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 418 (466)
+-|+ |..++..|+.+|.|+.. ++..+|-. .++.++.+.+-... -.++.+++..+|.+++.|+
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~v-------vvV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRV-------VVVEDDEIAAAILRLFEDE 317 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceE-------EEeccHHHHHHHHHHHHhh
Confidence 4444 56788999999998732 11222322 23333333212222 3467899999999999765
No 500
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=35.11 E-value=1.4e+02 Score=27.11 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=24.7
Q ss_pred CCccEEEe-CCCch-hHHHHHHHcCCceEEeccchh
Q 012314 106 EKIDCFIA-DGNIG-WSMEIAKKMNVRGAVFWPSSA 139 (466)
Q Consensus 106 ~~~DlvV~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 139 (466)
..||+||+ |+..- .+..=|.++|||+|.++-...
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 46888875 44322 788899999999999864433
Done!