BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012319
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 135/271 (49%), Gaps = 51/271 (18%)
Query: 147 ESVTVS-NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIP 205
+S+ VS GPD + ++ + ++EL+L P + +I ++ PTPIQK IP
Sbjct: 5 DSIPVSVTGPDYSATNVI---------ENFDELKLDPTIRNNILLASYQRPTPIQKNAIP 55
Query: 206 AAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 265
A DI+ A+TGSGKT AF +PI+ L+ + ++Y+ + +
Sbjct: 56 AILEHR--DIMACAQTGSGKTAAFLIPIINHLVCQ-----------DLNQQRYSKTAYPK 102
Query: 266 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 325
LI+ PTRELA+Q+ ++ + +R + GG T Q R ++ L+V TPGRL
Sbjct: 103 CLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLV 162
Query: 326 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTC 385
+ + EK+ + L + VLDEADRM++ G +++ II+ M +G N
Sbjct: 163 DFI---EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN---------- 209
Query: 386 VTVSSLQRKKRQTLVFSATIA-----LSADF 411
RQTL+FSAT L+ADF
Sbjct: 210 ----------RQTLMFSATFPKEIQKLAADF 230
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 134/269 (49%), Gaps = 55/269 (20%)
Query: 153 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 212
+ P +A + +V E E T + +L + +L ++ +LG+ +PT IQ IP A QG+
Sbjct: 27 DSPTEASQPIVEEEETKT----FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGR 81
Query: 213 VDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272
DIIG AETGSGKT AF LPI+ LLE ++ L AL++TPT
Sbjct: 82 -DIIGLAETGSGKTGAFALPILNALLETPQR--------------------LFALVLTPT 120
Query: 273 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 332
RELA Q+++ + + I V+ IVGG+ + Q L +P +++ TPGRL + + +
Sbjct: 121 RELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK 180
Query: 333 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQ 392
L L + V+DEADR++ E+ I+ ++P
Sbjct: 181 GF--NLRALKYLVMDEADRILNMDFETEVDKILKVIP----------------------- 215
Query: 393 RKKRQTLVFSATIALSADFRKKLKHGSLK 421
+ R+T +FSAT+ +KL+ +LK
Sbjct: 216 -RDRKTFLFSATMTKKV---QKLQRAALK 240
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 48/231 (20%)
Query: 175 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIM 234
+ + L P ++++++ G PTPIQ A +P A +GK D+IG A TG+GKTLAF LPI
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLAL-EGK-DLIGQARTGTGKTLAFALPIA 60
Query: 235 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 294
+RL +E+ K RAL++TPTRELALQV L VA +++V
Sbjct: 61 ERLAPSQERGRKP-----------------RALVLTPTRELALQVASELTAVAP--HLKV 101
Query: 295 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 354
V + GG KQ+ L + VV TPGR + + G +++L + VLDEAD M+
Sbjct: 102 VAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG---VLDLSRVEVAVLDEADEMLS 158
Query: 355 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 405
G E+++++ P RQTL+FSAT+
Sbjct: 159 MGFEEEVEALLSATP------------------------PSRQTLLFSATL 185
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 48/231 (20%)
Query: 175 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIM 234
+ + L P ++++++ G PTPI+ A +P A +GK D+IG A TG+GKTLAF LPI
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLAL-EGK-DLIGQARTGTGKTLAFALPIA 60
Query: 235 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 294
+RL +E+ K RAL++TPTRELALQV L VA +++V
Sbjct: 61 ERLAPSQERGRKP-----------------RALVLTPTRELALQVASELTAVAP--HLKV 101
Query: 295 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 354
V + GG KQ+ L + VV TPGR + + G +++L + VLDEAD M+
Sbjct: 102 VAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG---VLDLSRVEVAVLDEADEMLS 158
Query: 355 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 405
G E+++++ P RQTL+FSAT+
Sbjct: 159 MGFEEEVEALLSATP------------------------PSRQTLLFSATL 185
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 143/297 (48%), Gaps = 62/297 (20%)
Query: 163 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETG 222
V+ +++ + L +++ ++ + G+K PTPIQK IP + G+ D++ A+TG
Sbjct: 46 VTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVIS-SGR-DLMACAQTG 103
Query: 223 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 282
SGKT AF LPI+ +LLE+ + LE G + +I++PTRELA+Q+ +
Sbjct: 104 SGKTAAFLLPILSKLLEDPHE----LE-----------LGRPQVVIVSPTRELAIQIFNE 148
Query: 283 LKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 342
++ A +++ + GG S Q + +V+ TPGRL + + ++ +
Sbjct: 149 ARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFV---DRTFITFEDTR 205
Query: 343 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFS 402
F VLDEADRM++ G +++ I+ + M R + QTL+FS
Sbjct: 206 FVVLDEADRMLDMGFSEDMRRIMTHVTM----------------------RPEHQTLMFS 243
Query: 403 ATIA-----LSADFRKKLKHGSL--------KLKQSVNGLNS-------IETLSERA 439
AT ++ +F K ++ +KQ++ +N IE LSE+A
Sbjct: 244 ATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQA 300
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 106/197 (53%), Gaps = 26/197 (13%)
Query: 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229
E+ +NEL L ++ +I GF++PT IQ IP + + +I+ A TGSGKT +F
Sbjct: 3 VEYXNFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLND-EYNIVAQARTGSGKTASF 61
Query: 230 GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 289
+P+++ + E + A+I+TPTRELA+QV D ++ +
Sbjct: 62 AIPLIELVNEN---------------------NGIEAIILTPTRELAIQVADEIESLKGN 100
Query: 290 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 349
N+++ I GG + Q + LK +VVGTPGR+ + ++ G + L + +F+LDEA
Sbjct: 101 KNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT---LNLKNVKYFILDEA 156
Query: 350 DRMIENGHFRELQSIID 366
D + G ++++ I++
Sbjct: 157 DEXLNXGFIKDVEKILN 173
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 115/200 (57%), Gaps = 11/200 (5%)
Query: 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLP 232
++++++ + ++M +I + PTP+QK IP + K D++ A+TGSGKT AF LP
Sbjct: 15 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPII--KEKRDLMACAQTGSGKTAAFLLP 72
Query: 233 IMQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 291
I+ ++ + +A + ++E G + K + +L++ PTRELA+Q+ + ++ +
Sbjct: 73 ILSQIYSDGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSR 129
Query: 292 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351
VR + GG +Q R L+ L+V TPGRL ++M G+ + L + VLDEADR
Sbjct: 130 VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADR 186
Query: 352 MIENGHFRELQSII--DMLP 369
M++ G +++ I+ D +P
Sbjct: 187 MLDMGFEPQIRRIVEQDTMP 206
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 27/208 (12%)
Query: 168 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTL 227
++T+ + + + L L+ I+ GF++P+PIQ+ IP A G+ DI+ A+ G+GKT
Sbjct: 16 LNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGR-DILARAKNGTGKTA 73
Query: 228 AFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK-GHLRALIITPTRELALQVTDHLKEV 286
AF +P + EK PK ++ALI+ PTRELALQ + ++ +
Sbjct: 74 AFVIPTL---------------------EKVKPKLNKIQALIMVPTRELALQTSQVVRTL 112
Query: 287 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 346
K + + GG + L ++VGTPGR+ +L S + + +L S F++
Sbjct: 113 GKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLAS---RKVADLSDCSLFIM 169
Query: 347 DEADRMIENGHFRELQSIIDMLPMTNGS 374
DEAD+M+ ++ I+ LP T+ S
Sbjct: 170 DEADKMLSRDFKTIIEQILSFLPPTHQS 197
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 100/199 (50%), Gaps = 28/199 (14%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPI 233
+ + L P L+++I GF+ P+ +Q CIP A +D++ A++G GKT F L
Sbjct: 8 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI--LGMDVLCQAKSGMGKTAVFVLAT 65
Query: 234 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 292
+Q+L G + L++ TRELA Q++ + +K + NV
Sbjct: 66 LQQL--------------------EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 105
Query: 293 RVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351
+V GG+S +K E +LK P +VVGTPGR+ L + L + F+LDEAD+
Sbjct: 106 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILDEADK 162
Query: 352 MIENGHF-RELQSIIDMLP 369
M+E R++Q I M P
Sbjct: 163 MLEQLDMRRDVQEIFRMTP 181
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 28/199 (14%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPI 233
+ + L P L+++I GF+ P+ +Q CIP A +D++ A++G GKT F L
Sbjct: 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI--LGMDVLCQAKSGMGKTAVFVLAT 66
Query: 234 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 292
+Q+L G + L++ TRELA Q++ + +K + NV
Sbjct: 67 LQQL--------------------EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 106
Query: 293 RVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351
+V GG+S +K E +LK P +VVGTPGR+ L + L + F+LDE D+
Sbjct: 107 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILDECDK 163
Query: 352 MIENGHF-RELQSIIDMLP 369
M+E R++Q I M P
Sbjct: 164 MLEQLDMRRDVQEIFRMTP 182
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 28/199 (14%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPI 233
+ + L P L+++I GF+ P+ +Q CIP A +D++ A++G GKT F L
Sbjct: 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI--LGMDVLCQAKSGMGKTAVFVLAT 66
Query: 234 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 292
+Q+L G + L++ TRELA Q++ + +K + NV
Sbjct: 67 LQQL--------------------EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 106
Query: 293 RVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351
+V GG+S +K E +LK P +VVGTPGR+ L + L + F+LDE D+
Sbjct: 107 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILDECDK 163
Query: 352 MIENGHF-RELQSIIDMLP 369
M+E R++Q I M P
Sbjct: 164 MLEQLDMRRDVQEIFRMTP 182
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 163 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETG 222
V + +S + + L P L+++I GF+ P+ +Q CIP A +D++ A++G
Sbjct: 4 VKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI--LGMDVLCQAKSG 61
Query: 223 SGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 282
GKT F L +Q+L G + L++ TRELA Q++
Sbjct: 62 MGKTAVFVLATLQQL--------------------EPVTGQVSVLVMCHTRELAFQISKE 101
Query: 283 LKEVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHT 340
+ +K + NV+V GG+S +K E +LK P +VVGTPGR+ L + L
Sbjct: 102 YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKH 158
Query: 341 LSFFVLDEADRMIENGHF-RELQSIIDMLP 369
+ F+LDE D+M+E R++Q I M P
Sbjct: 159 IKHFILDECDKMLEQLDMRRDVQEIFRMTP 188
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 28/225 (12%)
Query: 146 EESVTVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPI-QKACI 204
++S + NGPD E E V E+ + D+++++ L L++ IY GF++P+ I Q+A +
Sbjct: 13 QDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAIL 72
Query: 205 PAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 264
P D+I A++G+GKT F + I+Q+ +E KA +
Sbjct: 73 PCIK---GYDVIAQAQSGTGKTATFAISILQQ-IELDLKATQ------------------ 110
Query: 265 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ-ERLLKARPELVVGTPGR 323
AL++ PTRELA Q+ + + + +GG + + ++L P ++VGTPGR
Sbjct: 111 -ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 169
Query: 324 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 368
++++++ + + + FVLDEAD M+ G ++ I L
Sbjct: 170 VFDMLN---RRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL 211
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 116/247 (46%), Gaps = 52/247 (21%)
Query: 184 LMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREK 243
+M I R F EPT IQ P A +D++G A+TGSGKTL++ LP + + +
Sbjct: 40 VMDVIARQNFTEPTAIQAQGWPVAL--SGLDMVGVAQTGSGKTLSYLLPAIVHINHQP-- 95
Query: 244 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST 303
E+G+ G + L++ PTRELA QV E + ++ I GG
Sbjct: 96 ----FLERGD--------GPI-CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 142
Query: 304 EKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQS 363
Q R L+ E+ + TPGRL + + G+ + L ++ VLDEADRM++ G +++
Sbjct: 143 GPQIRDLERGVEICIATPGRLIDFLECGKTN---LRRTTYLVLDEADRMLDMGFEPQIRK 199
Query: 364 IIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSADFRKKLKH- 417
I+D + R RQTL++SAT L+ DF K H
Sbjct: 200 IVDQI------------------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 235
Query: 418 --GSLKL 422
G+L+L
Sbjct: 236 NIGALEL 242
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 40/227 (17%)
Query: 184 LMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREK 243
+ K+I R+ F TP+Q+ I D+I A+TG+GKT AF +PI Q L+
Sbjct: 32 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---- 87
Query: 244 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK---GI-NVRVVPIVG 299
K+ + ++A+I+ PTR+LALQ+ +K++ G+ V +VG
Sbjct: 88 ------------TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 135
Query: 300 GMSTE-KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 358
G ++ K RP +V+ TPGRL +++ + + VLDEADR++E G
Sbjct: 136 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFR 193
Query: 359 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 405
+L++I +L NE S+ +TL+FSAT+
Sbjct: 194 DDLETISGIL------NEKNSKSADNI-----------KTLLFSATL 223
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 111/239 (46%), Gaps = 49/239 (20%)
Query: 184 LMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREK 243
+M I R F EPT IQ P A +D++G A+TGSGKTL++ LP + + +
Sbjct: 54 VMDVIARQNFTEPTAIQAQGWPVAL--SGLDMVGVAQTGSGKTLSYLLPAIVHINHQ--- 108
Query: 244 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST 303
E+G+ G + L++ PTRELA QV E + ++ I GG
Sbjct: 109 ---PFLERGD--------GPI-CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 156
Query: 304 EKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQS 363
Q R L+ E+ + TPGRL + + G+ + L ++ VLDEADRM++ G +++
Sbjct: 157 GPQIRDLERGVEICIATPGRLIDFLECGKTN---LRRTTYLVLDEADRMLDMGFEPQIRK 213
Query: 364 IIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSADFRKKLKH 417
I+D + R RQTL++SAT L+ DF K H
Sbjct: 214 IVDQI------------------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIH 248
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 108/216 (50%), Gaps = 26/216 (12%)
Query: 184 LMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREK 243
+ K+I R+ F TP+Q+ I D+I A+TG+GKT AF +PI Q L+
Sbjct: 83 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---- 138
Query: 244 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK---GI-NVRVVPIVG 299
K+ + ++A+I+ PTR+LALQ+ +K++ G+ V +VG
Sbjct: 139 ------------TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 186
Query: 300 GMSTE-KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 358
G ++ K RP +V+ TPGRL +++ + + VLDEADR++E G
Sbjct: 187 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFR 244
Query: 359 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 394
+L++I +L N N ++ +T + ++L K
Sbjct: 245 DDLETISGIL---NEKNSKSADNIKTLLFSATLDDK 277
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 108/216 (50%), Gaps = 26/216 (12%)
Query: 184 LMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREK 243
+ K+I R+ F TP+Q+ I D+I A+TG+GKT AF +PI Q L+
Sbjct: 32 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---- 87
Query: 244 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK---GI-NVRVVPIVG 299
K+ + ++A+I+ PTR+LALQ+ +K++ G+ V +VG
Sbjct: 88 ------------TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 135
Query: 300 GMSTE-KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 358
G ++ K RP +V+ TPGRL +++ + + VLDEADR++E G
Sbjct: 136 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFR 193
Query: 359 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 394
+L++I +L N N ++ +T + ++L K
Sbjct: 194 DDLETISGIL---NEKNSKSADNIKTLLFSATLDDK 226
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 98/180 (54%), Gaps = 32/180 (17%)
Query: 186 KSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 245
++I +GFK T +Q IP QGK +++ A+TGSGKT A+ +PI+
Sbjct: 7 QAIREMGFKNFTEVQSKTIPLML-QGK-NVVVRAKTGSGKTAAYAIPIL----------- 53
Query: 246 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEK 305
E G +++L++TPTREL QV H++++ + ++ +V + GGM +
Sbjct: 54 ----ELG-----------MKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKA 98
Query: 306 QERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 365
Q ++ ++VV TPGRL +L S G +++L + ++DEAD M E G +++ I+
Sbjct: 99 QINRVR-NADIVVATPGRLLDLWSKG---VIDLSSFEIVIIDEADLMFEMGFIDDIKIIL 154
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 114/215 (53%), Gaps = 34/215 (15%)
Query: 163 VSEAEISTEFDA----WNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQGKVDIIG 217
+ E++I T +D ++++ L L++ ++ GF+EP+ IQ +A +P D++
Sbjct: 8 IEESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH---DVLA 64
Query: 218 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 277
A++G+GKT F + +QR+ + AP+ AL++ PTRELAL
Sbjct: 65 QAQSGTGKTGTFSIAALQRI----------------DTSVKAPQ----ALMLAPTRELAL 104
Query: 278 QVTDHLKEVAKGINVRVVPIVGGMS-TEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 336
Q+ + +A ++++V +GG S E E L A ++VVGTPGR+++ + ++
Sbjct: 105 QIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--QIVVGTPGRVFDNI---QRRRF 159
Query: 337 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 371
+ F+LDEAD M+ +G ++ I +LP T
Sbjct: 160 RTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 194
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 51/258 (19%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPI 233
+++EL L P L+K IY + F++P+ IQ+ +P H ++I +++G+GKT AF L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 234 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293
+ R+ E +P+ A+ + P+RELA Q + ++E+ K +
Sbjct: 66 LTRV----------------NPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKIT 105
Query: 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 353
IV S EK +++ +++VGTPG + +LM + L++L + FVLDEAD M+
Sbjct: 106 SQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNML 158
Query: 354 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA-DFR 412
+ +G +Q C+ V K Q ++FSAT A + +
Sbjct: 159 D--------------------QQGLGDQ---CIRVKRFLPKDTQLVLFSATFADAVRQYA 195
Query: 413 KKLKHGSLKLKQSVNGLN 430
KK+ + L+ N +N
Sbjct: 196 KKIVPNANTLELQTNEVN 213
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 51/258 (19%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPI 233
+++EL L P L+K IY + F++P+ IQ+ +P H ++I +++G+GKT AF L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 234 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293
+ R+ E +P+ A+ + P+RELA Q + ++E+ K +
Sbjct: 66 LTRV----------------NPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKIT 105
Query: 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 353
IV S EK +++ +++VGTPG + +LM + L++L + FVLDEAD M+
Sbjct: 106 SQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNML 158
Query: 354 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA-DFR 412
+ +G +Q C+ V K Q ++FSAT A + +
Sbjct: 159 D--------------------QQGLGDQ---CIRVKRFLPKDTQLVLFSATFADAVRQYA 195
Query: 413 KKLKHGSLKLKQSVNGLN 430
KK+ + L+ N +N
Sbjct: 196 KKIVPNANTLELQTNEVN 213
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 50/233 (21%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPI 233
+++EL L P L+K IY + F++P+ IQ+ +P H ++I +++G+GKT AF L +
Sbjct: 23 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 82
Query: 234 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293
+ R+ E +P+ A+ + P+RELA Q + ++E+ K +
Sbjct: 83 LTRV----------------NPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKIT 122
Query: 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 353
IV S EK +++ +++VGTPG + +LM + L++L + FVLDEAD M+
Sbjct: 123 SQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNML 175
Query: 354 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406
+ +G +Q C+ V K Q ++FSAT A
Sbjct: 176 D--------------------QQGLGDQ---CIRVKRFLPKDTQLVLFSATFA 205
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 113/237 (47%), Gaps = 51/237 (21%)
Query: 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFG 230
E +++ L +K + ++ T IQK I A QGK D++GAA+TGSGKTLAF
Sbjct: 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTI-GLALQGK-DVLGAAKTGSGKTLAFL 80
Query: 231 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 290
+P+++ L ++ L LII+PTRELA Q + L++V K
Sbjct: 81 VPVLEALYR----------------LQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH 124
Query: 291 NVRVVPIVGGMSTEKQ-ERLLKARPELVVGTPGRLWELMSGGEKHLVELHT--LSFFVLD 347
+ I+GG + + ER+ ++V TPGRL + M V H L VLD
Sbjct: 125 DFSAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHMD----ETVSFHATDLQMLVLD 178
Query: 348 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 404
EADR+++ G + ++I+ LP KKRQTL+FSAT
Sbjct: 179 EADRILDMGFADTMNAVIENLP------------------------KKRQTLLFSAT 211
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 113/214 (52%), Gaps = 34/214 (15%)
Query: 165 EAEISTEFDA----WNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQGKVDIIGAA 219
E++I T +D ++++ L L++ ++ GF+EP+ IQ +A +P D++ A
Sbjct: 2 ESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH---DVLAQA 58
Query: 220 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV 279
++G+GKT F + +QR+ + AP+ AL++ PTRELALQ+
Sbjct: 59 QSGTGKTGTFSIAALQRI----------------DTSVKAPQ----ALMLAPTRELALQI 98
Query: 280 TDHLKEVAKGINVRVVPIVGGMS-TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 338
+ +A ++++V +GG S E E L A ++VVGTPGR+++ + ++
Sbjct: 99 QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--QIVVGTPGRVFDNI---QRRRFRT 153
Query: 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 372
+ F+LDEAD M+ +G ++ I +LP T
Sbjct: 154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 187
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 113/216 (52%), Gaps = 34/216 (15%)
Query: 163 VSEAEISTEFDA----WNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQGKVDIIG 217
+ E++I T + ++++ L L++ ++ GF+EP+ IQ +A +P D++
Sbjct: 7 IEESQIQTNYQKVVYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGH---DVLA 63
Query: 218 AAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 277
A++G+GKT F + +QR+ + AP+ AL++ PTRELAL
Sbjct: 64 QAQSGTGKTGTFSIAALQRI----------------DTSVKAPQ----ALMLAPTRELAL 103
Query: 278 QVTDHLKEVAKGINVRVVPIVGGMS-TEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 336
Q+ + +A ++++V +GG S E E L A ++VVGTPGR+++ + ++
Sbjct: 104 QIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--QIVVGTPGRVFDNI---QRRRF 158
Query: 337 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 372
+ F+LDEAD M+ +G ++ I +LP T
Sbjct: 159 RTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 194
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 50/227 (22%)
Query: 184 LMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREK 243
L+ I+ +G+++P+PIQ+ IP A G+ DI+ A+ G+GK+ A+ +P+++RL
Sbjct: 14 LLMGIFEMGWEKPSPIQEESIPIAL-SGR-DILARAKNGTGKSGAYLIPLLERL------ 65
Query: 244 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMS 302
K +++A++I PTRELALQV+ +V+K + +V+ GG +
Sbjct: 66 --------------DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTN 111
Query: 303 TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 362
L +V+ TPGR+ +L+ G + ++ + VLDEAD+++ + ++
Sbjct: 112 LRDDIMRLDDTVHVVIATPGRILDLIKKG---VAKVDHVQMIVLDEADKLLSQDFVQIME 168
Query: 363 SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 409
II LP K RQ L++SAT LS
Sbjct: 169 DIILTLP------------------------KNRQILLYSATFPLSV 191
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 102/199 (51%), Gaps = 30/199 (15%)
Query: 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQGKVDIIGAAETGSGKTLAFGL 231
D ++++ L L++ IY GF++P+ IQ +A IP D+I A++G+GKT F +
Sbjct: 30 DNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKG---YDVIAQAQSGTGKTATFAI 86
Query: 232 PIMQRL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 290
I+Q+L +E +E +AL++ PTRELA Q+ + + +
Sbjct: 87 SILQQLEIEFKET---------------------QALVLAPTRELAQQIQKVILALGDYM 125
Query: 291 NVRVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 349
+GG + + + L+A P +VVGTPGR++++++ + + + FVLDEA
Sbjct: 126 GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLN---RRYLSPKWIKMFVLDEA 182
Query: 350 DRMIENGHFRELQSIIDML 368
D M+ G ++ I L
Sbjct: 183 DEMLSRGFKDQIYEIFQKL 201
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 25/187 (13%)
Query: 177 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQR 236
E +++ L+++I GF+ PTPIQ IP H G+ +++ +A TGSGKTLAF +PI+ +
Sbjct: 33 EYKINSRLLQNILDAGFQMPTPIQMQAIPVMLH-GR-ELLASAPTGSGKTLAFSIPILMQ 90
Query: 237 LLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVP 296
L + K RALII+PTRELA Q+ L ++++G R+
Sbjct: 91 LKQPANKG-------------------FRALIISPTRELASQIHRELIKISEGTGFRIHM 131
Query: 297 I-VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 355
I ++ +K + +++V TP RL L+ ++L ++ + V+DE+D++ E+
Sbjct: 132 IHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPG-IDLASVEWLVVDESDKLFED 190
Query: 356 GH--FRE 360
G FR+
Sbjct: 191 GKTGFRD 197
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 30/213 (14%)
Query: 158 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIG 217
E E E +++ FD + L L++ IY GF++P+ IQ+ I +G+ D+I
Sbjct: 25 VEFETSEEVDVTPTFDT---MGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGR-DVIA 79
Query: 218 AAETGSGKTLAFGLPIMQRL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 276
+++G+GKT F + ++Q L ++ RE +ALI+ PTRELA
Sbjct: 80 QSQSGTGKTATFSISVLQCLDIQVRET---------------------QALILAPTRELA 118
Query: 277 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 336
+Q+ L + +NV+ +GG + + R L +V GTPGR+++++ + +
Sbjct: 119 VQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSL 175
Query: 337 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369
+ VLDEAD M+ G ++ + LP
Sbjct: 176 RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 208
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 30/213 (14%)
Query: 158 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIG 217
E E E +++ FD + L L++ IY GF++P+ IQ+ I +G+ D+I
Sbjct: 26 VEFETSEEVDVTPTFDT---MGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGR-DVIA 80
Query: 218 AAETGSGKTLAFGLPIMQRL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 276
+++G+GKT F + ++Q L ++ RE +ALI+ PTRELA
Sbjct: 81 QSQSGTGKTATFSISVLQCLDIQVRET---------------------QALILAPTRELA 119
Query: 277 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 336
+Q+ L + +NV+ +GG + + R L +V GTPGR+++++ + +
Sbjct: 120 VQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSL 176
Query: 337 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369
+ VLDEAD M+ G ++ + LP
Sbjct: 177 RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 209
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 30/213 (14%)
Query: 158 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIG 217
E E E +++ FD + L L++ IY GF++P+ IQ+ I +G+ D+I
Sbjct: 26 VEFETSEEVDVTPTFDT---MGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGR-DVIA 80
Query: 218 AAETGSGKTLAFGLPIMQRL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 276
+++G+GKT F + ++Q L ++ RE +ALI+ PTRELA
Sbjct: 81 QSQSGTGKTATFSISVLQCLDIQVRET---------------------QALILAPTRELA 119
Query: 277 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 336
+Q+ L + +NV+ +GG + + R L +V GTPGR+++++ + +
Sbjct: 120 VQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSL 176
Query: 337 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369
+ VLDEAD M+ G ++ + LP
Sbjct: 177 RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 209
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 32/214 (14%)
Query: 163 VSEAEISTEFDA----WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGA 218
+ E++I T +D +++ L L++ ++ GF+EP+ IQ+ I +G D++
Sbjct: 7 IEESQIQTNYDKVVYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPII-EGH-DVLAQ 64
Query: 219 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 278
A++G+GKT F + +QR+ + AP+ AL + PTRELALQ
Sbjct: 65 AQSGTGKTGTFSIAALQRI----------------DTSVKAPQ----ALXLAPTRELALQ 104
Query: 279 VTDHLKEVAKGINVRVVPIVGGMS-TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 337
+ + +A +++V +GG S E E L A ++VVGTPGR+++ + ++
Sbjct: 105 IQKVVXALAFHXDIKVHACIGGTSFVEDAEGLRDA--QIVVGTPGRVFDNI---QRRRFR 159
Query: 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 371
+ F+LDEAD + +G ++ I +LP T
Sbjct: 160 TDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPT 193
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 30/213 (14%)
Query: 158 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIG 217
E E E +++ FD + L L++ IY GF++P+ IQ+ I +G+ D+I
Sbjct: 4 VEFETSEEVDVTPTFDT---MGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGR-DVIA 58
Query: 218 AAETGSGKTLAFGLPIMQRL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 276
+++G+GKT F + ++Q L ++ RE +ALI+ PTRELA
Sbjct: 59 QSQSGTGKTATFSISVLQCLDIQVRET---------------------QALILAPTRELA 97
Query: 277 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 336
+Q+ L + +NV+ +GG + + R L +V GTPGR+++++ + +
Sbjct: 98 VQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSL 154
Query: 337 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369
+ VLDEAD M+ G ++ + LP
Sbjct: 155 RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 187
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 106/220 (48%), Gaps = 44/220 (20%)
Query: 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 244
+K+I +GF T IQ I +G+ D++ AA+TGSGKTLAF +P ++ +++ R
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLL-EGR-DLLAAAKTGSGKTLAFLIPAVELIVKLR--- 120
Query: 245 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 304
+ P+ LI++PTRELA+Q LKE+ I+GG +
Sbjct: 121 -------------FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 167
Query: 305 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 364
+ + L ++V TPGRL + M + + L V+DEADR+++ G EL+ I
Sbjct: 168 AEAQKLGNGINIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQI 225
Query: 365 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 404
I +LP +RQT++FSAT
Sbjct: 226 IKLLP------------------------TRRQTMLFSAT 241
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 28/198 (14%)
Query: 173 DAWNELRLHPLLMKSIYRLGFKEPTPI-QKACIPAAAHQGKVDIIGAAETGSGKTLAFGL 231
D+++++ L L++ IY GF++P+ I Q+A +P D+I A++G+GKT F +
Sbjct: 14 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIK---GYDVIAQAQSGTGKTATFAI 70
Query: 232 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 291
I+Q+ +E KA + AL++ PTRELA Q+ + + +
Sbjct: 71 SILQQ-IELDLKATQ-------------------ALVLAPTRELAQQIQKVVMALGDYMG 110
Query: 292 VRVVPIVGGMSTEKQ-ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 350
+GG + + ++L P ++VGTPGR++++++ + + + FVLDEAD
Sbjct: 111 ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN---RRYLSPKYIKMFVLDEAD 167
Query: 351 RMIENGHFRELQSIIDML 368
M+ G ++ I L
Sbjct: 168 EMLSRGFKDQIYDIFQKL 185
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 27/196 (13%)
Query: 175 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIM 234
++ + L L++ IY GF++P+ IQ+ I +G+ D+I +++G+GKT F + ++
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGR-DVIAQSQSGTGKTATFSVSVL 60
Query: 235 QRL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293
Q L ++ RE +ALI+ PTRELA+QV L + +NV+
Sbjct: 61 QCLDIQVRET---------------------QALILAPTRELAVQVQKGLLALGDYMNVQ 99
Query: 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 353
+GG + + R L +V GTPGR+++++ + + + VLDEAD M+
Sbjct: 100 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLRTRAIKMLVLDEADEML 156
Query: 354 ENGHFRELQSIIDMLP 369
G ++ + LP
Sbjct: 157 NKGFKEQIYDVYRYLP 172
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 101/198 (51%), Gaps = 28/198 (14%)
Query: 173 DAWNELRLHPLLMKSIYRLGFKEPTPI-QKACIPAAAHQGKVDIIGAAETGSGKTLAFGL 231
D+++++ L L++ IY GF+ P+ I Q+A +P D+I A++G+G T F +
Sbjct: 15 DSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIX---GYDVIAQAQSGTGXTATFAI 71
Query: 232 PIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 291
I+Q++ E + A + AL++ PTRELA Q+ + + +
Sbjct: 72 SILQQI----------------ELDLXATQ----ALVLAPTRELAQQIQXVVMALGDYMG 111
Query: 292 VRVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 350
+GG + + + L+ P ++VGTPGR++++++ ++L + + FVLDEAD
Sbjct: 112 ASCHACIGGTNVRAEVQXLQMEAPHIIVGTPGRVFDMLN--RRYLSPXY-IXMFVLDEAD 168
Query: 351 RMIENGHFRELQSIIDML 368
M+ G ++ I L
Sbjct: 169 EMLSRGFXDQIYDIFQXL 186
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 57/237 (24%)
Query: 175 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIM 234
+ P ++++I L F +PT IQ+ IP A +G+ +G ++TG+GKT A+ LPI
Sbjct: 6 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGAL-RGE-SXVGQSQTGTGKTHAYLLPIX 63
Query: 235 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK------ 288
+++ ER ++A+I PTRELA Q+ ++ K
Sbjct: 64 EKIKPER--------------------AEVQAVITAPTRELATQIYHETLKITKFCPKDR 103
Query: 289 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 348
I R ++GG +K L +P +V+GTPGR+ + + + +++HT V+DE
Sbjct: 104 XIVARC--LIGGTDKQKALEKLNVQPHIVIGTPGRINDFI---REQALDVHTAHILVVDE 158
Query: 349 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 405
AD ++ G ++ I P K Q LVFSATI
Sbjct: 159 ADLXLDXGFITDVDQIAARXP------------------------KDLQXLVFSATI 191
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 27/196 (13%)
Query: 175 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIM 234
++ + L L++ IY GF++P+ IQ+ I +G+ D+I +++G+GKT F + ++
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGR-DVIAQSQSGTGKTATFSVSVL 60
Query: 235 QRL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293
Q L ++ RE +ALI+ PTRELA+QV L + +NV+
Sbjct: 61 QCLDIQVRET---------------------QALILAPTRELAVQVQKGLLALGDYMNVQ 99
Query: 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 353
+GG + + R L +V GTPGR+++++ + + + VLDEAD M+
Sbjct: 100 SHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLRTRAIKMLVLDEADEML 156
Query: 354 ENGHFRELQSIIDMLP 369
G ++ + LP
Sbjct: 157 NKGFKEQIYDVYRYLP 172
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 27/198 (13%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPI 233
++ ELRL P L++ +Y +GF P+ IQ+ +P + ++I +++G+GKT AF L +
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 234 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 292
+ ++ E A KY + L ++PT ELALQ ++++ K +
Sbjct: 153 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 192
Query: 293 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 193 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 247
Query: 353 IE-NGHFRELQSIIDMLP 369
I GH + I MLP
Sbjct: 248 IATQGHQDQSIRIQRMLP 265
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 27/198 (13%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPI 233
++ ELRL P L++ +Y +GF P+ IQ+ +P + ++I +++G+GKT AF L +
Sbjct: 63 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 122
Query: 234 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 292
+ ++ E A KY + L ++PT ELALQ ++++ K +
Sbjct: 123 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 162
Query: 293 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 163 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 217
Query: 353 IE-NGHFRELQSIIDMLP 369
I GH + I MLP
Sbjct: 218 IATQGHQDQSIRIQRMLP 235
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 27/198 (13%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPI 233
++ ELRL P L++ +Y +GF P+ IQ+ +P + ++I +++G+GKT AF L +
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 234 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 292
+ ++ E A KY + L ++PT ELALQ ++++ K +
Sbjct: 153 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 192
Query: 293 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 193 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 247
Query: 353 IE-NGHFRELQSIIDMLP 369
I GH + I MLP
Sbjct: 248 IATQGHQDQSIRIQRMLP 265
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 27/198 (13%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPI 233
++ ELRL P L++ +Y +GF P+ IQ+ +P + ++I +++G+GKT AF L +
Sbjct: 26 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85
Query: 234 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 292
+ ++ E A KY + L ++PT ELALQ ++++ K +
Sbjct: 86 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 125
Query: 293 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 126 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 180
Query: 353 IE-NGHFRELQSIIDMLP 369
I GH + I MLP
Sbjct: 181 IATQGHQDQSIRIQRMLP 198
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 27/198 (13%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPI 233
++ ELRL P L++ +Y +GF P+ IQ+ +P + ++I +++G+GKT AF L +
Sbjct: 42 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 101
Query: 234 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 292
+ ++ E A KY + L ++PT ELALQ ++++ K +
Sbjct: 102 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 141
Query: 293 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 142 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 196
Query: 353 IE-NGHFRELQSIIDMLP 369
I GH + I MLP
Sbjct: 197 IATQGHQDQSIRIQRMLP 214
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 27/198 (13%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPI 233
++ ELRL P L++ +Y +GF P+ IQ+ +P + ++I +++G+GKT AF L +
Sbjct: 26 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85
Query: 234 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 292
+ ++ E A KY + L ++PT ELALQ ++++ K +
Sbjct: 86 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 125
Query: 293 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 126 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 180
Query: 353 IE-NGHFRELQSIIDMLP 369
I GH + I MLP
Sbjct: 181 IATQGHQDQSIRIQRMLP 198
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 37/189 (19%)
Query: 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLP 232
DA+ + +P L+KSI R+G +PTPIQ P QG +D+I A+TG+GKTL++ +P
Sbjct: 23 DAFQQ---YPDLLKSIIRVGILKPTPIQSQAWPIIL-QG-IDLIVVAQTGTGKTLSYLMP 77
Query: 233 IMQRL------LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV-TDHLKE 285
L E+R G L++TPTRELAL V + K
Sbjct: 78 GFIHLDSQPISREQRNGPG--------------------MLVLTPTRELALHVEAECSKY 117
Query: 286 VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 345
KG+ + + I GG + Q + ++++ TPGRL +L V L ++++ V
Sbjct: 118 SYKGL--KSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS---VNLRSITYLV 172
Query: 346 LDEADRMIE 354
+DEAD+M++
Sbjct: 173 IDEADKMLD 181
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 41/177 (23%)
Query: 192 GFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251
GF+ P+P+Q IP + +D+I A++G+GKT F + L+ E
Sbjct: 43 GFERPSPVQLKAIPLG--RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST------- 93
Query: 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA---KGINVRVVPIVGGMSTEKQER 308
+ LI+ PTRE+A+Q+ + + +G+ V +GG + +
Sbjct: 94 -------------QILILAPTREIAVQIHSVITAIGIKMEGLECHV--FIGGTPLSQDKT 138
Query: 309 LLKARPELVVGTPGRLWELMSGGEKHLVELHTLS-----FFVLDEADRMIENGHFRE 360
LK + + VG+PGR+ K L+EL L+ F+LDEAD+++E G F+E
Sbjct: 139 RLK-KCHIAVGSPGRI--------KQLIELDYLNPGSIRLFILDEADKLLEEGSFQE 186
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 27/156 (17%)
Query: 199 IQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 258
IQ+ +P ++IG +++G+GKT AF L ++ R+ +
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV------------------DAS 186
Query: 259 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVV 318
PK A+ + P+RELA Q+ D + E+ K V+ + + + K ++V+
Sbjct: 187 VPKPQ--AICLAPSRELARQIMDVVTEMGKYTEVKTAFGI----KDSVPKGAKIDAQIVI 240
Query: 319 GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 354
GTPG + +LM ++ ++ + FVLDEAD M++
Sbjct: 241 GTPGTVMDLM---KRRQLDARDIKVFVLDEADNMLD 273
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 27/166 (16%)
Query: 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 244
+S+Y+ F PIQ + +GA TGSGKT+ I++ LL+ E
Sbjct: 916 FESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAP-TGSGKTICAEFAILRMLLQSSEG- 973
Query: 245 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV-TDHLKEVAKGINVRVVPIVGGMST 303
R + ITP LA QV D ++ +N +VV + G ST
Sbjct: 974 --------------------RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETST 1013
Query: 304 EKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 349
+ + L + +++ TP + W+++S K + ++ FV+DE
Sbjct: 1014 DLK---LLGKGNIIISTPEK-WDILSRRWKQRKNVQNINLFVVDEV 1055
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 27/166 (16%)
Query: 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 244
+S+Y+ F PIQ + +GA TGSGKT+ I++ LL+ E
Sbjct: 916 FESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAP-TGSGKTICAEFAILRMLLQSSEG- 973
Query: 245 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV-TDHLKEVAKGINVRVVPIVGGMST 303
R + ITP LA QV D ++ +N +VV + G ST
Sbjct: 974 --------------------RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETST 1013
Query: 304 EKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 349
+ + L + +++ TP + W+++S K + ++ FV+DE
Sbjct: 1014 DLK---LLGKGNIIISTPEK-WDILSRRWKQRKNVQNINLFVVDEV 1055
>pdb|2QYT|A Chain A, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Porphyromonas Gingivalis W83
Length = 317
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 39/179 (21%)
Query: 280 TDHLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 336
TD L EV A+G ++ + GG+ R ARP V P
Sbjct: 34 TDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPA-------------- 79
Query: 337 ELHTLSFFVLDEADRMIENGHFRELQSII----DMLPMTNGSNEGQSEQT--------QT 384
E+ T+ + + D E G E++ I +LP+ NG++ + +T +
Sbjct: 80 EVGTVDYILFCTKDYDXERG-VAEIRPXIGQNTKILPLLNGADIAERXRTYLPDTVVWKG 138
Query: 385 CVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA 443
CV +S+ RK L I L AD R+ GS +Q+ + + E L+ AG+RA
Sbjct: 139 CVYISA--RKSAPGL-----ITLEAD-RELFYFGSGLPEQTDDEVRLAELLTA-AGIRA 188
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 325 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM--LPMTNGSNEGQSEQT 382
W++ + KH ++L+ F++D+A++ + N + R ++ +ID LP+ N S E + T
Sbjct: 286 WDMWNRDHKHGLKLYVQRVFIMDDAEQFMPN-YLRFVRGLIDSSDLPL-NVSREILQDST 343
Query: 383 QTCVTVSSLQRKKRQTL 399
T ++L ++ Q L
Sbjct: 344 VTRNLRNALTKRVLQML 360
>pdb|2GQ0|A Chain A, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
pdb|2GQ0|B Chain B, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
Length = 303
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 325 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM--LPMTNGSNEGQSEQT 382
W++ + KH ++L+ F++D+A++ + N + R ++ +ID LP+ N S E + T
Sbjct: 58 WDMWNRDHKHGLKLYVQRVFIMDDAEQFMPN-YLRFVRGLIDSSDLPL-NVSREILQDST 115
Query: 383 QTCVTVSSLQRKKRQTL 399
T ++L ++ Q L
Sbjct: 116 VTRNLRNALTKRVLQML 132
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 309 LLKARPELVVGTPGRL---WELMSGGEKHLVELHTL---------SFFVLDEADRMIEN 355
+L A E+ + PGR L+SGGEK LV L L F+VLDE D +++
Sbjct: 198 ILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDD 256
>pdb|1Y4S|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4S|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
Length = 559
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 325 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM--LPMTNGSNEGQSEQT 382
W++ + KH ++L+ F++D+A++ + N + R ++ +ID LP+ N S E + T
Sbjct: 286 WDMWNRDHKHGLKLYVQRVFIMDDAEQFMPN-YLRFVRGLIDSSDLPL-NVSREILQDST 343
Query: 383 QTCVTVSSLQRKKRQTL 399
T ++L ++ Q L
Sbjct: 344 VTRNLRNALTKRVLQML 360
>pdb|3H7M|A Chain A, Crystal Structure Of A Histidine Kinase Sensor Domain With
Similarity To Periplasmic Binding Proteins
Length = 234
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 248 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE 307
L G E A +G+ + L++TPT AL++ A G + VV +V GM ++
Sbjct: 122 LHRDGIMHEYLAERGYGKDLVLTPTPADALRLL-----AAGGCDYAVVAMVPGMYIIREN 176
Query: 308 RLLKARP 314
RL P
Sbjct: 177 RLTNLVP 183
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 340 TLSFFVLDEAD--RMIENGHFRELQSIIDMLPMTNGSNEG 377
T+S V +EAD R I+ FR +D +PMT N G
Sbjct: 449 TMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSG 488
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,343,083
Number of Sequences: 62578
Number of extensions: 435564
Number of successful extensions: 1184
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 64
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)