Query 012319
Match_columns 466
No_of_seqs 430 out of 2854
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 01:23:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0347 RNA helicase [RNA proc 100.0 1.3E-46 2.8E-51 376.4 20.3 268 170-466 178-445 (731)
2 KOG0338 ATP-dependent RNA heli 100.0 5.8E-46 1.2E-50 368.9 19.1 191 172-407 180-370 (691)
3 KOG0330 ATP-dependent RNA heli 100.0 3.4E-43 7.3E-48 339.9 19.4 191 170-408 58-248 (476)
4 KOG0331 ATP-dependent RNA heli 100.0 2.5E-40 5.5E-45 338.6 18.7 194 173-408 91-284 (519)
5 COG0513 SrmB Superfamily II DN 100.0 4.1E-39 8.9E-44 340.3 23.7 188 173-407 29-217 (513)
6 KOG0343 RNA Helicase [RNA proc 100.0 2.3E-39 4.9E-44 324.5 14.6 201 170-415 66-266 (758)
7 KOG0342 ATP-dependent RNA heli 100.0 3.8E-38 8.3E-43 313.1 18.1 191 173-407 82-273 (543)
8 KOG0348 ATP-dependent RNA heli 100.0 4.7E-38 1E-42 314.2 14.9 210 172-410 135-346 (708)
9 KOG0340 ATP-dependent RNA heli 100.0 5.4E-37 1.2E-41 293.9 17.1 219 172-439 6-230 (442)
10 PTZ00110 helicase; Provisional 100.0 2E-36 4.4E-41 322.5 22.0 198 167-408 124-321 (545)
11 KOG0339 ATP-dependent RNA heli 100.0 4.2E-37 9E-42 305.5 15.3 200 164-407 214-413 (731)
12 KOG0345 ATP-dependent RNA heli 100.0 2.2E-36 4.8E-41 298.7 19.8 195 173-409 4-202 (567)
13 KOG0341 DEAD-box protein abstr 100.0 7.2E-38 1.6E-42 302.3 6.7 246 165-451 162-414 (610)
14 KOG0333 U5 snRNP-like RNA heli 100.0 4.3E-36 9.2E-41 299.8 17.4 230 164-409 236-466 (673)
15 PRK04837 ATP-dependent RNA hel 100.0 1.7E-35 3.6E-40 307.7 22.6 196 173-408 8-203 (423)
16 KOG0326 ATP-dependent RNA heli 100.0 9.3E-37 2E-41 288.4 11.1 244 172-464 84-346 (459)
17 PLN00206 DEAD-box ATP-dependen 100.0 2E-35 4.3E-40 313.8 22.3 206 167-415 115-321 (518)
18 KOG0335 ATP-dependent RNA heli 100.0 2.1E-36 4.5E-41 305.1 13.2 207 166-407 67-274 (482)
19 KOG0346 RNA helicase [RNA proc 100.0 6.2E-36 1.4E-40 293.2 15.0 202 172-415 18-221 (569)
20 PRK10590 ATP-dependent RNA hel 100.0 5.8E-35 1.2E-39 306.1 22.9 199 174-415 2-201 (456)
21 PRK04537 ATP-dependent RNA hel 100.0 1.3E-34 2.8E-39 309.9 22.6 196 173-407 9-204 (572)
22 PRK11776 ATP-dependent RNA hel 100.0 1.9E-34 4.2E-39 302.8 22.4 187 173-408 4-191 (460)
23 PRK11634 ATP-dependent RNA hel 100.0 2.9E-34 6.3E-39 309.2 23.4 189 172-409 5-194 (629)
24 PRK11192 ATP-dependent RNA hel 100.0 3.7E-34 8.1E-39 298.6 23.5 198 174-416 2-201 (434)
25 KOG0337 ATP-dependent RNA heli 100.0 1.5E-34 3.2E-39 282.3 14.0 188 173-408 21-208 (529)
26 KOG0334 RNA helicase [RNA proc 100.0 7E-35 1.5E-39 312.5 11.5 202 166-408 358-559 (997)
27 KOG0328 Predicted ATP-dependen 100.0 7.1E-34 1.5E-38 264.9 14.2 188 170-406 24-211 (400)
28 KOG0336 ATP-dependent RNA heli 100.0 3.3E-34 7.1E-39 278.6 12.2 197 168-408 214-411 (629)
29 PRK01297 ATP-dependent RNA hel 100.0 3.5E-32 7.7E-37 286.7 22.6 196 172-407 86-282 (475)
30 PTZ00424 helicase 45; Provisio 100.0 4.4E-31 9.6E-36 272.6 22.3 188 172-408 27-214 (401)
31 KOG0350 DEAD-box ATP-dependent 100.0 2E-31 4.4E-36 265.2 13.8 214 181-416 145-381 (620)
32 cd00268 DEADc DEAD-box helicas 100.0 8.5E-30 1.8E-34 238.4 23.7 186 175-407 1-186 (203)
33 TIGR03817 DECH_helic helicase/ 100.0 5.4E-30 1.2E-34 281.1 21.4 194 180-416 21-215 (742)
34 KOG0327 Translation initiation 100.0 2E-30 4.2E-35 252.0 12.7 188 171-407 24-212 (397)
35 KOG0329 ATP-dependent RNA heli 100.0 3.1E-29 6.7E-34 231.0 14.5 186 173-407 42-229 (387)
36 PRK02362 ski2-like helicase; P 100.0 7.7E-29 1.7E-33 273.8 19.5 192 174-417 2-193 (737)
37 PRK00254 ski2-like helicase; P 100.0 1.4E-28 3E-33 271.2 20.9 190 174-417 2-191 (720)
38 KOG4284 DEAD box protein [Tran 100.0 3.2E-29 7E-34 255.3 12.0 187 170-406 22-210 (980)
39 PRK13767 ATP-dependent helicas 99.9 7.3E-27 1.6E-31 261.1 20.2 200 180-417 18-229 (876)
40 KOG0332 ATP-dependent RNA heli 99.9 7.4E-28 1.6E-32 232.4 10.1 196 171-415 88-285 (477)
41 KOG2340 Uncharacterized conser 99.9 5.4E-28 1.2E-32 242.0 8.4 210 194-406 215-480 (698)
42 PF00270 DEAD: DEAD/DEAH box h 99.9 3.5E-26 7.5E-31 207.1 19.2 162 197-406 1-163 (169)
43 PRK01172 ski2-like helicase; P 99.9 2E-26 4.3E-31 252.7 19.6 191 174-418 2-192 (674)
44 KOG0344 ATP-dependent RNA heli 99.9 1.8E-26 3.9E-31 234.9 11.3 207 167-416 126-340 (593)
45 COG1201 Lhr Lhr-like helicases 99.9 1.3E-25 2.9E-30 242.2 17.4 199 180-418 8-206 (814)
46 TIGR02621 cas3_GSU0051 CRISPR- 99.9 1.6E-24 3.5E-29 235.0 18.5 169 191-407 12-217 (844)
47 PRK09401 reverse gyrase; Revie 99.9 1E-23 2.3E-28 239.4 21.5 184 191-407 77-280 (1176)
48 COG1205 Distinct helicase fami 99.9 2.9E-23 6.3E-28 229.3 18.4 200 180-420 55-257 (851)
49 PLN03137 ATP-dependent DNA hel 99.9 6.3E-23 1.4E-27 226.0 19.4 185 174-416 436-639 (1195)
50 TIGR01054 rgy reverse gyrase. 99.9 1.3E-22 2.8E-27 230.8 19.6 156 183-369 66-240 (1171)
51 COG1204 Superfamily II helicas 99.9 4.5E-23 9.7E-28 225.0 15.0 189 179-418 15-203 (766)
52 TIGR00614 recQ_fam ATP-depende 99.9 1.9E-22 4.1E-27 212.4 18.5 168 190-415 6-184 (470)
53 PRK14701 reverse gyrase; Provi 99.9 3.9E-22 8.4E-27 231.2 21.4 150 183-363 67-234 (1638)
54 PRK09751 putative ATP-dependen 99.9 1E-22 2.2E-27 232.4 15.6 169 217-417 1-181 (1490)
55 TIGR00580 mfd transcription-re 99.9 9E-22 1.9E-26 218.9 20.6 166 180-406 436-610 (926)
56 KOG0952 DNA/RNA helicase MER3/ 99.9 2.4E-22 5.2E-27 215.0 12.7 192 191-418 106-298 (1230)
57 PRK11057 ATP-dependent DNA hel 99.9 1.7E-21 3.6E-26 210.8 18.5 169 185-415 14-196 (607)
58 PRK12899 secA preprotein trans 99.9 9.5E-22 2.1E-26 212.8 16.5 147 177-353 66-228 (970)
59 TIGR01389 recQ ATP-dependent D 99.9 2.5E-21 5.3E-26 209.5 17.7 166 191-416 9-185 (591)
60 PRK10917 ATP-dependent DNA hel 99.9 4.4E-21 9.6E-26 209.8 19.2 139 183-353 249-396 (681)
61 PRK10689 transcription-repair 99.9 6.6E-21 1.4E-25 216.2 20.1 162 184-406 590-759 (1147)
62 TIGR00643 recG ATP-dependent D 99.9 7.1E-21 1.5E-25 206.7 18.8 139 183-353 224-370 (630)
63 KOG0349 Putative DEAD-box RNA 99.8 2.2E-21 4.8E-26 190.5 9.4 124 262-406 285-411 (725)
64 COG1202 Superfamily II helicas 99.8 1.5E-20 3.2E-25 190.6 12.2 198 173-418 194-395 (830)
65 smart00487 DEXDc DEAD-like hel 99.8 7.7E-19 1.7E-23 161.3 19.9 171 190-409 3-174 (201)
66 PF06862 DUF1253: Protein of u 99.8 5.8E-20 1.3E-24 187.2 10.8 154 252-406 26-226 (442)
67 PHA02558 uvsW UvsW helicase; P 99.8 4.5E-19 9.8E-24 188.0 16.1 150 193-407 112-261 (501)
68 COG4581 Superfamily II RNA hel 99.8 7E-19 1.5E-23 193.0 14.4 171 188-418 113-283 (1041)
69 TIGR01970 DEAH_box_HrpB ATP-de 99.8 2.2E-18 4.7E-23 190.1 18.3 153 203-415 10-165 (819)
70 PHA02653 RNA helicase NPH-II; 99.8 2E-18 4.2E-23 186.4 15.6 164 197-415 166-342 (675)
71 PRK11664 ATP-dependent RNA hel 99.8 3.5E-18 7.6E-23 188.8 17.4 148 209-415 18-168 (812)
72 KOG0354 DEAD-box like helicase 99.8 4.6E-18 9.9E-23 180.3 14.8 167 192-409 59-225 (746)
73 PRK05580 primosome assembly pr 99.8 3.1E-17 6.7E-22 179.2 21.5 122 195-353 144-271 (679)
74 TIGR01587 cas3_core CRISPR-ass 99.8 2.1E-18 4.5E-23 175.6 11.3 145 214-406 1-166 (358)
75 PRK13766 Hef nuclease; Provisi 99.7 9.8E-17 2.1E-21 179.1 23.4 164 192-408 12-175 (773)
76 TIGR03158 cas3_cyano CRISPR-as 99.7 4.1E-17 8.8E-22 165.9 17.3 130 199-354 1-159 (357)
77 KOG0947 Cytoplasmic exosomal R 99.7 3.7E-18 8E-23 181.4 9.9 167 189-421 292-460 (1248)
78 COG1111 MPH1 ERCC4-like helica 99.7 1.4E-16 3E-21 160.8 19.6 170 193-415 13-182 (542)
79 TIGR00963 secA preprotein tran 99.7 5.1E-17 1.1E-21 174.3 14.7 133 191-353 53-189 (745)
80 PRK09200 preprotein translocas 99.7 1E-16 2.2E-21 174.4 14.8 134 191-353 75-212 (790)
81 PRK12898 secA preprotein trans 99.7 1.8E-16 3.9E-21 169.1 15.3 133 191-353 100-255 (656)
82 PRK13104 secA preprotein trans 99.7 1.5E-16 3.2E-21 173.1 14.1 131 191-353 79-215 (896)
83 TIGR03714 secA2 accessory Sec 99.7 1.2E-16 2.7E-21 172.3 13.1 135 191-353 67-208 (762)
84 cd00046 DEXDc DEAD-like helica 99.7 1.7E-15 3.7E-20 130.9 17.0 143 214-405 2-144 (144)
85 COG0514 RecQ Superfamily II DN 99.7 7E-16 1.5E-20 161.8 16.7 213 191-463 13-253 (590)
86 KOG0951 RNA helicase BRR2, DEA 99.6 4.3E-16 9.3E-21 169.5 10.5 191 191-416 305-495 (1674)
87 KOG0948 Nuclear exosomal RNA h 99.6 1.2E-15 2.6E-20 159.0 9.2 161 195-418 129-289 (1041)
88 KOG0352 ATP-dependent DNA heli 99.6 7.3E-15 1.6E-19 144.9 14.0 165 183-407 6-188 (641)
89 TIGR00595 priA primosomal prot 99.6 1.4E-14 2.9E-19 153.2 17.2 102 216-353 1-106 (505)
90 PRK11131 ATP-dependent RNA hel 99.6 6.7E-15 1.5E-19 166.3 14.8 152 203-416 81-238 (1294)
91 PRK12904 preprotein translocas 99.6 1.6E-14 3.4E-19 157.2 13.6 132 191-353 78-214 (830)
92 PF04851 ResIII: Type III rest 99.6 5.9E-14 1.3E-18 128.1 13.9 155 195-406 3-183 (184)
93 PRK09694 helicase Cas3; Provis 99.6 3.6E-14 7.7E-19 157.1 14.3 166 193-407 284-482 (878)
94 KOG0351 ATP-dependent DNA heli 99.5 2.1E-13 4.6E-18 150.9 12.9 218 188-463 257-508 (941)
95 PRK13107 preprotein translocas 99.5 2.2E-13 4.8E-18 148.1 11.6 133 191-353 79-215 (908)
96 KOG0926 DEAH-box RNA helicase 99.5 1.3E-13 2.9E-18 144.7 8.9 158 202-412 262-430 (1172)
97 KOG0949 Predicted helicase, DE 99.5 2.7E-13 5.8E-18 145.1 11.0 171 195-416 511-682 (1330)
98 TIGR01967 DEAH_box_HrpA ATP-de 99.5 4.3E-13 9.3E-18 152.3 13.2 168 191-416 60-231 (1283)
99 PRK11448 hsdR type I restricti 99.4 1.8E-12 3.9E-17 147.5 15.3 136 194-352 412-552 (1123)
100 TIGR00603 rad25 DNA repair hel 99.4 2E-12 4.2E-17 140.0 14.4 152 195-406 255-412 (732)
101 TIGR01407 dinG_rel DnaQ family 99.4 4.6E-12 1E-16 142.5 17.9 97 181-302 232-334 (850)
102 COG1061 SSL2 DNA or RNA helica 99.4 1.5E-12 3.3E-17 135.8 12.4 122 195-356 36-162 (442)
103 PRK07246 bifunctional ATP-depe 99.4 4.7E-12 1E-16 141.0 16.3 90 188-303 239-332 (820)
104 COG1200 RecG RecG-like helicas 99.4 1.4E-11 3.1E-16 129.6 16.4 143 179-353 246-397 (677)
105 KOG0950 DNA polymerase theta/e 99.4 1.9E-12 4.2E-17 139.2 9.6 191 180-418 207-400 (1008)
106 TIGR03117 cas_csf4 CRISPR-asso 99.3 1.7E-11 3.7E-16 131.4 15.3 72 208-301 13-87 (636)
107 COG1197 Mfd Transcription-repa 99.3 1.2E-10 2.7E-15 129.0 19.2 166 180-406 579-753 (1139)
108 KOG0353 ATP-dependent DNA heli 99.3 5E-11 1.1E-15 116.4 13.7 174 177-408 75-263 (695)
109 TIGR00348 hsdR type I site-spe 99.3 5.1E-11 1.1E-15 130.4 14.6 155 196-406 239-403 (667)
110 COG1643 HrpA HrpA-like helicas 99.3 3.2E-11 6.9E-16 132.3 12.9 155 204-417 58-216 (845)
111 COG1198 PriA Primosomal protei 99.2 1.2E-10 2.5E-15 126.1 14.9 186 194-452 197-396 (730)
112 COG1110 Reverse gyrase [DNA re 99.1 1.3E-09 2.9E-14 118.3 16.6 143 191-368 79-229 (1187)
113 KOG0920 ATP-dependent RNA heli 99.1 3E-09 6.5E-14 116.8 18.2 165 197-418 175-341 (924)
114 COG4098 comFA Superfamily II D 99.1 2.9E-09 6.3E-14 103.4 15.5 154 195-417 97-253 (441)
115 smart00488 DEXDc2 DEAD-like he 99.1 1.4E-09 2.9E-14 107.5 13.7 74 195-286 8-84 (289)
116 smart00489 DEXDc3 DEAD-like he 99.1 1.4E-09 2.9E-14 107.5 13.7 74 195-286 8-84 (289)
117 PRK13103 secA preprotein trans 99.1 8.3E-10 1.8E-14 120.7 12.5 133 191-353 79-215 (913)
118 PRK08074 bifunctional ATP-depe 99.1 2.4E-09 5.1E-14 121.4 16.0 87 191-302 254-347 (928)
119 KOG0951 RNA helicase BRR2, DEA 99.0 7.5E-11 1.6E-15 129.4 2.7 174 193-421 1141-1315(1674)
120 PF07652 Flavi_DEAD: Flaviviru 99.0 7.2E-10 1.6E-14 96.2 8.2 102 214-352 6-107 (148)
121 COG1203 CRISPR-associated heli 99.0 2E-09 4.4E-14 119.1 12.2 170 195-407 195-382 (733)
122 KOG0922 DEAH-box RNA helicase 99.0 3.2E-09 6.9E-14 111.2 11.8 157 202-417 58-216 (674)
123 PRK12326 preprotein translocas 99.0 5.4E-09 1.2E-13 111.9 13.7 132 191-353 75-211 (764)
124 PF00176 SNF2_N: SNF2 family N 99.0 2.6E-09 5.5E-14 105.4 10.2 147 214-406 27-173 (299)
125 COG4096 HsdR Type I site-speci 98.9 3.6E-09 7.9E-14 113.3 10.5 142 194-369 164-310 (875)
126 PRK12906 secA preprotein trans 98.9 7E-09 1.5E-13 113.1 12.4 133 191-353 77-213 (796)
127 PRK12902 secA preprotein trans 98.9 1.7E-08 3.6E-13 110.2 13.7 132 191-353 82-218 (939)
128 CHL00122 secA preprotein trans 98.9 1.2E-08 2.6E-13 111.4 11.8 132 191-353 73-209 (870)
129 PLN03142 Probable chromatin-re 98.8 7.7E-08 1.7E-12 108.5 16.0 144 195-369 169-318 (1033)
130 PRK04914 ATP-dependent helicas 98.8 1.8E-08 3.9E-13 113.0 11.0 132 195-353 152-285 (956)
131 KOG0923 mRNA splicing factor A 98.8 2.6E-08 5.7E-13 103.8 11.0 156 197-415 267-429 (902)
132 PRK11747 dinG ATP-dependent DN 98.8 8.9E-08 1.9E-12 105.5 15.2 65 192-280 23-95 (697)
133 PF07517 SecA_DEAD: SecA DEAD- 98.8 2E-07 4.3E-12 90.3 14.7 133 191-353 74-210 (266)
134 KOG0924 mRNA splicing factor A 98.7 4.5E-08 9.7E-13 102.4 10.0 156 201-416 362-520 (1042)
135 KOG0952 DNA/RNA helicase MER3/ 98.7 1.5E-09 3.3E-14 117.9 -2.3 183 193-419 925-1107(1230)
136 PRK14873 primosome assembly pr 98.7 9.7E-08 2.1E-12 103.9 11.4 140 219-420 167-316 (665)
137 TIGR02562 cas3_yersinia CRISPR 98.7 1.5E-07 3.3E-12 104.2 12.4 168 195-407 408-636 (1110)
138 KOG0925 mRNA splicing factor A 98.6 1.1E-07 2.4E-12 96.2 9.7 181 172-417 24-212 (699)
139 COG1199 DinG Rad3-related DNA 98.6 1.6E-07 3.6E-12 103.3 10.3 74 190-286 10-86 (654)
140 PRK15483 type III restriction- 98.6 1E-06 2.2E-11 97.9 16.0 145 214-407 61-240 (986)
141 TIGR00604 rad3 DNA repair heli 98.5 7.1E-07 1.5E-11 98.9 10.9 48 191-239 6-56 (705)
142 PRK12903 secA preprotein trans 98.4 2.9E-06 6.3E-11 92.7 12.0 133 191-353 75-211 (925)
143 KOG0385 Chromatin remodeling c 98.3 9.8E-06 2.1E-10 86.4 13.8 143 195-369 167-316 (971)
144 COG4889 Predicted helicase [Ge 98.3 4.4E-06 9.5E-11 89.9 10.6 150 173-353 140-317 (1518)
145 PF13086 AAA_11: AAA domain; P 98.2 7.4E-06 1.6E-10 77.4 9.5 73 196-285 2-75 (236)
146 PF13604 AAA_30: AAA domain; P 98.2 1.9E-05 4E-10 73.6 11.7 117 195-369 1-118 (196)
147 KOG0387 Transcription-coupled 98.1 4.6E-05 9.9E-10 81.7 13.6 153 178-369 196-364 (923)
148 KOG1002 Nucleotide excision re 98.1 3.5E-05 7.6E-10 78.5 11.7 132 195-354 184-330 (791)
149 KOG0390 DNA repair protein, SN 98.0 9.9E-05 2.1E-09 80.5 15.6 163 195-406 238-415 (776)
150 COG0610 Type I site-specific r 98.0 8.5E-05 1.8E-09 84.6 15.5 139 214-407 275-415 (962)
151 KOG1123 RNA polymerase II tran 98.0 2.7E-06 5.9E-11 86.6 2.7 141 194-366 301-447 (776)
152 PRK12900 secA preprotein trans 98.0 2E-05 4.3E-10 87.5 9.1 130 195-353 138-271 (1025)
153 PF02562 PhoH: PhoH-like prote 97.9 7.4E-05 1.6E-09 69.7 10.7 188 194-461 3-197 (205)
154 KOG1803 DNA helicase [Replicat 97.9 2E-05 4.4E-10 82.3 7.1 66 195-284 185-250 (649)
155 KOG1000 Chromatin remodeling p 97.8 0.00013 2.7E-09 74.7 10.8 155 193-407 196-350 (689)
156 PRK12901 secA preprotein trans 97.8 5.2E-05 1.1E-09 84.3 8.4 130 195-353 169-303 (1112)
157 KOG0391 SNF2 family DNA-depend 97.8 0.00022 4.7E-09 79.2 12.9 141 195-365 615-761 (1958)
158 KOG0389 SNF2 family DNA-depend 97.8 9.4E-05 2E-09 79.4 9.4 143 196-364 400-550 (941)
159 TIGR01447 recD exodeoxyribonuc 97.8 0.0005 1.1E-08 74.3 14.8 135 197-369 147-284 (586)
160 PF09848 DUF2075: Uncharacteri 97.8 0.00011 2.3E-09 74.9 9.1 108 214-367 3-117 (352)
161 PF13872 AAA_34: P-loop contai 97.7 0.00038 8.1E-09 68.1 12.0 174 176-407 24-222 (303)
162 KOG1802 RNA helicase nonsense 97.7 0.0002 4.4E-09 75.5 10.4 83 188-298 403-485 (935)
163 TIGR00376 DNA helicase, putati 97.7 0.0004 8.6E-09 76.0 13.1 68 194-285 156-223 (637)
164 PRK10875 recD exonuclease V su 97.7 0.0004 8.8E-09 75.3 12.9 134 197-369 154-290 (615)
165 KOG1132 Helicase of the DEAD s 97.7 0.00039 8.6E-09 75.7 11.9 92 195-287 21-134 (945)
166 KOG0392 SNF2 family DNA-depend 97.6 0.00028 6E-09 78.9 10.4 150 196-369 976-1127(1549)
167 PRK10536 hypothetical protein; 97.6 0.0033 7.2E-08 60.5 16.3 46 191-238 55-100 (262)
168 PF02399 Herpes_ori_bp: Origin 97.6 0.00023 4.9E-09 77.7 8.9 143 214-415 51-201 (824)
169 KOG4439 RNA polymerase II tran 97.5 0.00023 5E-09 75.5 7.7 143 195-353 325-476 (901)
170 PF13245 AAA_19: Part of AAA d 97.5 0.0006 1.3E-08 53.3 7.7 61 203-283 2-62 (76)
171 TIGR01448 recD_rel helicase, p 97.4 0.0025 5.3E-08 70.9 14.5 67 191-281 320-386 (720)
172 PF14617 CMS1: U3-containing 9 97.4 0.00043 9.3E-09 66.5 6.8 87 260-350 123-211 (252)
173 COG3587 Restriction endonuclea 97.3 0.00092 2E-08 72.7 9.6 119 213-354 75-219 (985)
174 PF13401 AAA_22: AAA domain; P 97.3 0.0017 3.7E-08 55.6 9.4 16 214-229 6-21 (131)
175 PF05970 PIF1: PIF1-like helic 97.3 0.00073 1.6E-08 69.1 7.6 125 196-371 2-132 (364)
176 KOG1805 DNA replication helica 97.3 0.0017 3.6E-08 71.6 10.6 126 193-353 667-809 (1100)
177 PRK12723 flagellar biosynthesi 97.3 0.0035 7.7E-08 64.3 12.5 18 214-231 176-193 (388)
178 PF00580 UvrD-helicase: UvrD/R 97.2 0.0013 2.9E-08 65.0 8.2 125 196-350 1-125 (315)
179 PF12340 DUF3638: Protein of u 97.1 0.0037 7.9E-08 59.1 10.3 155 174-354 4-186 (229)
180 KOG0384 Chromodomain-helicase 97.1 0.0039 8.4E-08 70.3 11.2 142 194-369 369-524 (1373)
181 PRK13889 conjugal transfer rel 97.1 0.011 2.4E-07 67.3 15.1 65 191-280 343-407 (988)
182 COG0653 SecA Preprotein transl 97.0 0.0032 6.9E-08 69.3 9.7 133 191-353 77-213 (822)
183 KOG4150 Predicted ATP-dependen 97.0 0.00026 5.7E-09 73.4 1.3 187 191-416 282-472 (1034)
184 TIGR02768 TraA_Ti Ti-type conj 97.0 0.017 3.7E-07 64.5 15.7 62 195-280 352-413 (744)
185 PRK14722 flhF flagellar biosyn 96.9 0.0051 1.1E-07 62.7 9.9 22 214-235 139-160 (374)
186 KOG0921 Dosage compensation co 96.9 0.0015 3.3E-08 71.2 5.9 109 209-351 391-504 (1282)
187 PRK04296 thymidine kinase; Pro 96.8 0.0031 6.7E-08 58.4 6.6 42 318-369 62-103 (190)
188 PRK13826 Dtr system oriT relax 96.7 0.042 9.1E-07 63.2 15.6 77 179-280 366-442 (1102)
189 KOG0953 Mitochondrial RNA heli 96.6 0.002 4.3E-08 67.1 4.3 100 214-357 193-292 (700)
190 KOG0386 Chromatin remodeling c 96.6 0.0055 1.2E-07 67.8 7.6 128 195-353 394-528 (1157)
191 COG0556 UvrB Helicase subunit 96.6 0.0072 1.6E-07 62.9 8.0 70 195-290 12-84 (663)
192 PRK08181 transposase; Validate 96.5 0.02 4.4E-07 55.9 10.4 22 208-230 103-124 (269)
193 cd00009 AAA The AAA+ (ATPases 96.4 0.042 9E-07 46.9 11.1 15 214-228 21-35 (151)
194 PF05127 Helicase_RecD: Helica 96.4 0.002 4.3E-08 58.7 2.7 111 216-365 1-111 (177)
195 PRK06526 transposase; Provisio 96.4 0.012 2.6E-07 57.0 8.1 22 209-231 96-117 (254)
196 COG1875 NYN ribonuclease and A 96.4 0.071 1.5E-06 53.5 13.3 50 191-240 224-273 (436)
197 cd01120 RecA-like_NTPases RecA 96.4 0.069 1.5E-06 46.9 12.3 18 338-355 83-100 (165)
198 KOG1015 Transcription regulato 96.3 0.069 1.5E-06 59.2 13.4 128 220-369 704-848 (1567)
199 PRK14974 cell division protein 96.2 0.051 1.1E-06 54.8 11.8 45 339-407 221-266 (336)
200 PHA03368 DNA packaging termina 96.2 0.074 1.6E-06 57.5 13.4 144 214-418 256-405 (738)
201 KOG1131 RNA polymerase II tran 96.2 0.041 8.9E-07 57.2 11.0 46 192-238 13-61 (755)
202 PF03354 Terminase_1: Phage Te 96.2 0.014 3.1E-07 61.8 8.2 129 198-354 1-137 (477)
203 TIGR01075 uvrD DNA helicase II 96.2 0.014 2.9E-07 65.2 8.2 71 194-287 3-73 (715)
204 KOG0388 SNF2 family DNA-depend 96.1 0.018 3.9E-07 61.7 7.7 140 195-366 567-720 (1185)
205 PRK05703 flhF flagellar biosyn 96.0 0.056 1.2E-06 56.4 11.4 18 214-231 223-240 (424)
206 COG2805 PilT Tfp pilus assembl 96.0 0.036 7.8E-07 54.2 9.0 52 168-240 101-152 (353)
207 TIGR00631 uvrb excinuclease AB 96.0 0.062 1.3E-06 59.1 11.9 69 195-289 9-80 (655)
208 COG1444 Predicted P-loop ATPas 96.0 0.08 1.7E-06 58.2 12.5 141 187-367 206-346 (758)
209 PRK10919 ATP-dependent DNA hel 96.0 0.015 3.2E-07 64.4 7.0 71 195-288 2-72 (672)
210 PRK11054 helD DNA helicase IV; 96.0 0.034 7.3E-07 61.5 9.7 79 193-294 194-272 (684)
211 PRK05642 DNA replication initi 96.0 0.021 4.6E-07 54.7 7.2 32 338-369 95-127 (234)
212 PRK11889 flhF flagellar biosyn 95.9 0.11 2.4E-06 53.2 12.5 20 214-233 243-262 (436)
213 COG0553 HepA Superfamily II DN 95.9 0.049 1.1E-06 61.8 11.3 138 194-354 337-486 (866)
214 PRK06893 DNA replication initi 95.8 0.024 5.2E-07 54.0 7.1 31 338-368 89-120 (229)
215 PHA02533 17 large terminase pr 95.8 0.09 2E-06 56.4 12.0 72 195-289 59-130 (534)
216 PRK07952 DNA replication prote 95.8 0.11 2.5E-06 49.9 11.5 24 214-238 101-124 (244)
217 COG3421 Uncharacterized protei 95.8 0.014 3E-07 61.6 5.3 43 311-353 79-125 (812)
218 COG1419 FlhF Flagellar GTP-bin 95.7 0.1 2.2E-06 53.4 11.2 20 211-231 203-222 (407)
219 PTZ00112 origin recognition co 95.7 0.24 5.1E-06 55.5 14.7 28 339-367 868-895 (1164)
220 PF00308 Bac_DnaA: Bacterial d 95.7 0.12 2.5E-06 49.0 11.0 32 338-369 95-127 (219)
221 PRK14087 dnaA chromosomal repl 95.7 0.068 1.5E-06 56.2 10.3 32 338-369 204-236 (450)
222 PF05621 TniB: Bacterial TniB 95.7 0.036 7.8E-07 54.5 7.5 57 213-285 62-118 (302)
223 PHA03333 putative ATPase subun 95.7 0.27 5.9E-06 53.5 14.7 73 194-288 168-241 (752)
224 PRK13894 conjugal transfer ATP 95.6 0.042 9E-07 55.1 8.1 68 185-276 124-191 (319)
225 TIGR01074 rep ATP-dependent DN 95.6 0.03 6.5E-07 62.0 7.5 70 196-288 2-71 (664)
226 PRK06921 hypothetical protein; 95.5 0.2 4.4E-06 48.9 12.1 23 214-237 119-141 (266)
227 PRK13833 conjugal transfer pro 95.5 0.061 1.3E-06 53.9 8.6 47 187-237 122-168 (323)
228 TIGR01547 phage_term_2 phage t 95.4 0.073 1.6E-06 55.0 9.2 121 214-369 3-126 (396)
229 PRK00149 dnaA chromosomal repl 95.4 0.085 1.8E-06 55.6 9.8 23 214-237 150-172 (450)
230 TIGR02782 TrbB_P P-type conjug 95.4 0.084 1.8E-06 52.5 9.1 68 185-276 108-175 (299)
231 smart00382 AAA ATPases associa 95.3 0.048 1E-06 46.0 6.5 17 214-230 4-20 (148)
232 TIGR02760 TraI_TIGR conjugativ 95.3 0.24 5.3E-06 61.0 14.4 66 195-283 429-494 (1960)
233 PRK11773 uvrD DNA-dependent he 95.2 0.041 8.8E-07 61.5 7.1 71 195-288 9-79 (721)
234 PRK13709 conjugal transfer nic 95.2 0.22 4.8E-06 60.1 13.4 67 195-280 967-1033(1747)
235 PRK05298 excinuclease ABC subu 95.1 0.2 4.4E-06 55.2 12.1 69 195-289 12-83 (652)
236 TIGR02760 TraI_TIGR conjugativ 95.1 0.37 8E-06 59.4 15.2 65 194-280 1018-1085(1960)
237 PRK12727 flagellar biosynthesi 95.1 0.3 6.5E-06 52.0 12.6 21 210-231 349-369 (559)
238 PRK14712 conjugal transfer nic 95.1 0.23 5E-06 59.3 12.9 65 195-280 835-901 (1623)
239 PRK08727 hypothetical protein; 95.0 0.095 2.1E-06 50.1 8.1 16 214-229 43-58 (233)
240 PRK14723 flhF flagellar biosyn 94.9 0.11 2.3E-06 57.6 9.2 20 214-233 187-206 (767)
241 PRK06835 DNA replication prote 94.9 0.18 3.8E-06 50.8 10.1 24 214-238 185-208 (329)
242 COG1474 CDC6 Cdc6-related prot 94.9 0.22 4.7E-06 51.0 10.8 33 204-237 34-66 (366)
243 COG1435 Tdk Thymidine kinase [ 94.9 0.04 8.6E-07 50.6 4.9 51 314-369 60-110 (201)
244 TIGR03015 pepcterm_ATPase puta 94.9 0.13 2.9E-06 49.8 9.0 35 195-229 23-60 (269)
245 TIGR00362 DnaA chromosomal rep 94.9 0.13 2.7E-06 53.5 9.2 23 214-237 138-160 (405)
246 COG1484 DnaC DNA replication p 94.9 0.12 2.6E-06 50.1 8.5 51 209-284 103-153 (254)
247 PRK12377 putative replication 94.8 0.28 6.1E-06 47.3 10.8 24 214-238 103-126 (248)
248 PRK08903 DnaA regulatory inact 94.8 0.3 6.5E-06 46.2 10.9 16 214-229 44-59 (227)
249 PF00448 SRP54: SRP54-type pro 94.8 0.26 5.7E-06 45.8 10.1 17 214-230 3-19 (196)
250 KOG0989 Replication factor C, 94.7 0.12 2.7E-06 50.7 7.9 33 336-369 125-157 (346)
251 PRK06731 flhF flagellar biosyn 94.7 0.48 1E-05 46.4 12.1 19 214-232 77-95 (270)
252 cd01124 KaiC KaiC is a circadi 94.7 0.17 3.6E-06 46.1 8.5 48 215-286 2-49 (187)
253 TIGR03420 DnaA_homol_Hda DnaA 94.6 0.11 2.5E-06 48.8 7.4 16 214-229 40-55 (226)
254 PRK11331 5-methylcytosine-spec 94.5 0.11 2.4E-06 54.1 7.6 33 196-230 180-212 (459)
255 PRK06995 flhF flagellar biosyn 94.5 0.12 2.6E-06 54.6 8.0 88 214-325 258-347 (484)
256 TIGR01073 pcrA ATP-dependent D 94.5 0.085 1.9E-06 59.0 7.2 72 194-288 3-74 (726)
257 cd01122 GP4d_helicase GP4d_hel 94.4 0.44 9.5E-06 46.3 11.3 26 209-235 28-53 (271)
258 TIGR00580 mfd transcription-re 94.4 0.49 1.1E-05 54.1 13.1 79 263-352 660-742 (926)
259 PRK10689 transcription-repair 94.3 0.58 1.3E-05 54.8 13.7 78 264-352 810-891 (1147)
260 PRK12422 chromosomal replicati 94.3 0.22 4.7E-06 52.4 9.3 31 338-368 200-231 (445)
261 PRK08116 hypothetical protein; 94.2 0.18 3.9E-06 49.3 8.0 24 214-238 116-139 (268)
262 PRK00411 cdc6 cell division co 94.2 0.23 5E-06 51.1 9.2 16 214-229 57-72 (394)
263 TIGR00596 rad1 DNA repair prot 94.1 0.11 2.4E-06 58.3 6.9 69 312-407 6-74 (814)
264 PF00004 AAA: ATPase family as 94.1 0.12 2.5E-06 43.9 5.7 16 341-356 59-74 (132)
265 TIGR02881 spore_V_K stage V sp 94.0 0.25 5.4E-06 48.0 8.7 16 214-229 44-59 (261)
266 PRK08084 DNA replication initi 94.0 0.38 8.3E-06 46.0 9.8 16 214-229 47-62 (235)
267 KOG0344 ATP-dependent RNA heli 93.9 0.84 1.8E-05 48.4 12.5 97 221-350 366-466 (593)
268 PRK12724 flagellar biosynthesi 93.9 0.59 1.3E-05 48.5 11.3 22 214-235 225-246 (432)
269 PRK05707 DNA polymerase III su 93.9 0.41 8.9E-06 48.2 10.1 34 196-229 4-39 (328)
270 TIGR02785 addA_Gpos recombinat 93.9 0.26 5.7E-06 58.4 9.9 125 196-351 2-126 (1232)
271 PHA02544 44 clamp loader, smal 93.8 0.53 1.2E-05 46.8 10.8 29 340-368 100-128 (316)
272 PRK14956 DNA polymerase III su 93.8 0.45 9.8E-06 50.2 10.3 18 214-231 42-59 (484)
273 PRK14088 dnaA chromosomal repl 93.8 0.38 8.3E-06 50.5 9.9 23 214-237 132-154 (440)
274 TIGR03499 FlhF flagellar biosy 93.7 0.52 1.1E-05 46.4 10.2 18 214-231 196-213 (282)
275 PRK09183 transposase/IS protei 93.7 0.49 1.1E-05 46.0 9.8 22 209-231 100-121 (259)
276 PRK08533 flagellar accessory p 93.7 0.56 1.2E-05 44.7 10.1 20 209-229 22-41 (230)
277 PRK12402 replication factor C 93.6 0.53 1.2E-05 47.1 10.5 16 214-229 38-53 (337)
278 PRK12726 flagellar biosynthesi 93.6 0.43 9.4E-06 48.8 9.5 20 214-233 208-227 (407)
279 PRK07003 DNA polymerase III su 93.5 0.32 6.9E-06 53.8 9.0 28 339-367 118-145 (830)
280 TIGR02928 orc1/cdc6 family rep 93.5 0.66 1.4E-05 47.1 11.0 23 214-237 42-64 (365)
281 PRK00771 signal recognition pa 93.5 0.76 1.7E-05 48.1 11.4 18 214-231 97-114 (437)
282 PF05496 RuvB_N: Holliday junc 93.4 0.19 4.2E-06 47.5 6.3 16 214-229 52-67 (233)
283 PF07728 AAA_5: AAA domain (dy 93.4 0.026 5.6E-07 49.0 0.4 16 214-229 1-16 (139)
284 PRK08691 DNA polymerase III su 93.4 0.33 7.2E-06 53.3 8.9 18 214-231 40-57 (709)
285 COG2256 MGS1 ATPase related to 93.4 0.36 7.8E-06 49.1 8.4 28 204-231 39-67 (436)
286 PRK07764 DNA polymerase III su 93.4 0.29 6.2E-06 55.3 8.6 19 214-232 39-57 (824)
287 PRK04195 replication factor C 93.3 0.25 5.4E-06 52.6 7.8 16 214-229 41-56 (482)
288 PRK12323 DNA polymerase III su 93.3 0.54 1.2E-05 51.3 10.1 18 214-231 40-57 (700)
289 PHA03372 DNA packaging termina 93.3 2.2 4.8E-05 46.0 14.4 143 214-417 204-351 (668)
290 PLN03025 replication factor C 93.2 0.96 2.1E-05 45.3 11.5 17 213-229 35-51 (319)
291 PRK04537 ATP-dependent RNA hel 93.1 0.37 8E-06 52.4 8.8 74 263-349 257-334 (572)
292 PRK14961 DNA polymerase III su 93.0 0.71 1.5E-05 47.2 10.3 18 214-231 40-57 (363)
293 PRK14086 dnaA chromosomal repl 93.0 0.4 8.6E-06 52.0 8.6 32 338-369 375-407 (617)
294 PRK13851 type IV secretion sys 93.0 0.16 3.5E-06 51.4 5.4 35 201-237 152-186 (344)
295 PF13173 AAA_14: AAA domain 92.9 1.1 2.3E-05 38.3 9.8 27 340-368 61-87 (128)
296 PRK13342 recombination factor 92.8 0.7 1.5E-05 48.1 10.2 16 214-229 38-53 (413)
297 TIGR00959 ffh signal recogniti 92.7 0.58 1.3E-05 48.8 9.2 18 214-231 101-118 (428)
298 KOG2227 Pre-initiation complex 92.6 0.49 1.1E-05 49.1 8.3 16 214-229 177-192 (529)
299 COG4962 CpaF Flp pilus assembl 92.6 0.26 5.7E-06 49.3 6.2 37 191-228 153-189 (355)
300 TIGR00631 uvrb excinuclease AB 92.6 1.2 2.5E-05 49.3 11.8 93 263-371 442-538 (655)
301 PRK06645 DNA polymerase III su 92.6 0.56 1.2E-05 50.0 9.1 18 214-231 45-62 (507)
302 cd01130 VirB11-like_ATPase Typ 92.6 0.27 5.9E-06 45.1 6.0 39 188-229 4-42 (186)
303 PF06745 KaiC: KaiC; InterPro 92.5 0.64 1.4E-05 43.9 8.6 50 214-286 21-70 (226)
304 PRK04837 ATP-dependent RNA hel 92.5 0.39 8.5E-06 50.1 7.8 71 264-347 256-330 (423)
305 COG1197 Mfd Transcription-repa 92.4 0.57 1.2E-05 53.7 9.3 93 263-370 803-899 (1139)
306 cd01126 TraG_VirD4 The TraG/Tr 92.4 0.097 2.1E-06 53.9 3.1 48 214-286 1-48 (384)
307 PRK14949 DNA polymerase III su 92.4 0.6 1.3E-05 52.6 9.3 17 215-231 41-57 (944)
308 COG0630 VirB11 Type IV secreto 92.4 0.23 5E-06 49.6 5.6 43 193-237 125-167 (312)
309 COG2804 PulE Type II secretory 92.4 0.27 5.9E-06 51.6 6.2 46 188-237 237-282 (500)
310 PRK14960 DNA polymerase III su 92.3 0.26 5.7E-06 53.7 6.2 18 214-231 39-56 (702)
311 PRK13341 recombination factor 92.3 1 2.2E-05 50.2 11.0 16 214-229 54-69 (725)
312 PRK14959 DNA polymerase III su 92.2 0.4 8.6E-06 52.2 7.5 18 214-231 40-57 (624)
313 PRK14957 DNA polymerase III su 92.2 1 2.3E-05 48.4 10.6 18 214-231 40-57 (546)
314 PRK11823 DNA repair protein Ra 92.2 0.77 1.7E-05 48.3 9.5 49 214-286 82-130 (446)
315 PF05729 NACHT: NACHT domain 92.2 1 2.2E-05 39.5 9.1 24 214-238 2-25 (166)
316 COG3973 Superfamily I DNA and 92.1 0.76 1.7E-05 49.1 9.1 58 214-288 228-285 (747)
317 PRK14721 flhF flagellar biosyn 92.1 0.33 7.1E-06 50.5 6.5 20 214-233 193-212 (420)
318 PRK14952 DNA polymerase III su 92.1 0.53 1.1E-05 51.1 8.3 17 215-231 38-54 (584)
319 cd01129 PulE-GspE PulE/GspE Th 92.0 0.35 7.7E-06 47.1 6.3 46 188-237 59-104 (264)
320 PRK07994 DNA polymerase III su 92.0 0.78 1.7E-05 50.3 9.4 17 215-231 41-57 (647)
321 PF05876 Terminase_GpA: Phage 92.0 0.13 2.8E-06 55.6 3.5 74 195-290 16-90 (557)
322 PRK14955 DNA polymerase III su 91.9 1 2.3E-05 46.6 10.0 18 214-231 40-57 (397)
323 PF02534 T4SS-DNA_transf: Type 91.9 0.19 4.2E-06 53.1 4.6 48 214-286 46-93 (469)
324 PRK10867 signal recognition pa 91.8 1.6 3.5E-05 45.6 11.2 18 214-231 102-119 (433)
325 PRK14964 DNA polymerase III su 91.8 0.77 1.7E-05 48.7 8.9 18 214-231 37-54 (491)
326 PRK13900 type IV secretion sys 91.8 0.34 7.4E-06 48.9 6.0 34 202-237 151-184 (332)
327 PRK11034 clpA ATP-dependent Cl 91.8 1.1 2.5E-05 50.1 10.6 28 202-229 197-224 (758)
328 PTZ00110 helicase; Provisional 91.5 0.75 1.6E-05 49.7 8.7 72 262-346 376-451 (545)
329 PRK11192 ATP-dependent RNA hel 91.5 0.6 1.3E-05 48.8 7.8 71 263-346 245-319 (434)
330 KOG0991 Replication factor C, 91.4 0.52 1.1E-05 44.7 6.3 30 339-369 112-141 (333)
331 PRK05563 DNA polymerase III su 91.4 0.64 1.4E-05 50.4 8.0 18 214-231 40-57 (559)
332 PRK09111 DNA polymerase III su 91.3 0.72 1.6E-05 50.3 8.3 18 214-231 48-65 (598)
333 TIGR00064 ftsY signal recognit 91.3 1.5 3.2E-05 43.0 9.8 20 214-233 74-93 (272)
334 PRK09112 DNA polymerase III su 91.3 1 2.3E-05 45.8 9.0 24 214-238 47-70 (351)
335 KOG0744 AAA+-type ATPase [Post 91.3 1.5 3.2E-05 43.6 9.5 116 209-356 175-325 (423)
336 TIGR03819 heli_sec_ATPase heli 91.2 0.56 1.2E-05 47.5 7.0 42 185-229 154-195 (340)
337 PRK05986 cob(I)alamin adenolsy 91.2 5.1 0.00011 37.0 12.6 24 214-237 24-47 (191)
338 PRK14965 DNA polymerase III su 91.2 1.4 3E-05 48.0 10.3 18 214-231 40-57 (576)
339 PRK10590 ATP-dependent RNA hel 91.2 0.88 1.9E-05 48.0 8.7 71 263-346 245-319 (456)
340 TIGR00635 ruvB Holliday juncti 91.1 0.89 1.9E-05 45.0 8.2 16 214-229 32-47 (305)
341 PRK08939 primosomal protein Dn 91.0 1.1 2.4E-05 44.6 8.8 23 214-237 158-180 (306)
342 TIGR02525 plasmid_TraJ plasmid 91.0 0.38 8.3E-06 49.3 5.6 24 214-238 151-174 (372)
343 TIGR02688 conserved hypothetic 91.0 1 2.2E-05 46.7 8.5 22 209-231 207-228 (449)
344 PRK14958 DNA polymerase III su 91.0 0.4 8.7E-06 51.3 5.9 18 214-231 40-57 (509)
345 PF01695 IstB_IS21: IstB-like 90.8 0.53 1.2E-05 43.0 5.8 28 209-238 45-72 (178)
346 TIGR03877 thermo_KaiC_1 KaiC d 90.8 1.1 2.4E-05 42.8 8.3 50 214-287 23-72 (237)
347 PRK03992 proteasome-activating 90.8 0.59 1.3E-05 48.3 6.8 16 214-229 167-182 (389)
348 TIGR02538 type_IV_pilB type IV 90.8 0.45 9.7E-06 51.6 6.1 47 187-237 294-340 (564)
349 PRK10436 hypothetical protein; 90.8 0.48 1E-05 50.0 6.2 46 188-237 197-242 (462)
350 COG0593 DnaA ATPase involved i 90.7 1.2 2.5E-05 46.1 8.7 30 340-369 175-205 (408)
351 PRK08769 DNA polymerase III su 90.7 1.6 3.5E-05 43.7 9.6 45 193-238 2-51 (319)
352 TIGR03878 thermo_KaiC_2 KaiC d 90.6 1.2 2.6E-05 43.3 8.4 18 214-231 38-55 (259)
353 PRK08506 replicative DNA helic 90.5 1.7 3.7E-05 46.1 10.1 27 209-237 190-216 (472)
354 TIGR00614 recQ_fam ATP-depende 90.4 1 2.2E-05 47.7 8.4 74 263-349 226-303 (470)
355 PRK11776 ATP-dependent RNA hel 90.4 0.9 1.9E-05 47.9 7.9 73 264-349 243-319 (460)
356 COG4626 Phage terminase-like p 90.3 3.1 6.7E-05 44.3 11.5 139 195-369 61-211 (546)
357 PRK07471 DNA polymerase III su 90.3 2 4.2E-05 44.0 10.0 24 214-238 43-66 (365)
358 PRK13897 type IV secretion sys 90.2 0.34 7.3E-06 52.8 4.6 55 214-297 160-214 (606)
359 PRK14953 DNA polymerase III su 90.2 2.6 5.6E-05 44.9 11.2 17 215-231 41-57 (486)
360 PRK14963 DNA polymerase III su 90.2 1.4 2.9E-05 47.2 9.0 23 214-237 38-60 (504)
361 PRK11634 ATP-dependent RNA hel 90.1 0.99 2.1E-05 49.6 8.2 70 264-346 246-319 (629)
362 PHA00729 NTP-binding motif con 90.1 1.2 2.7E-05 42.2 7.7 20 210-229 15-34 (226)
363 KOG1133 Helicase of the DEAD s 90.1 0.62 1.3E-05 50.4 6.2 45 195-240 15-62 (821)
364 KOG0732 AAA+-type ATPase conta 90.0 0.6 1.3E-05 53.2 6.4 54 173-229 262-316 (1080)
365 cd01121 Sms Sms (bacterial rad 90.0 2 4.3E-05 44.1 9.8 18 214-231 84-101 (372)
366 PTZ00293 thymidine kinase; Pro 90.0 1.3 2.8E-05 41.6 7.7 16 214-229 6-21 (211)
367 KOG0741 AAA+-type ATPase [Post 90.0 7.3 0.00016 41.4 13.6 52 178-229 494-555 (744)
368 COG0470 HolB ATPase involved i 90.0 0.69 1.5E-05 45.9 6.4 24 214-238 25-49 (325)
369 PRK08699 DNA polymerase III su 89.9 2.6 5.6E-05 42.4 10.4 33 197-229 3-38 (325)
370 KOG0331 ATP-dependent RNA heli 89.9 0.98 2.1E-05 47.9 7.4 74 260-346 338-415 (519)
371 KOG3089 Predicted DEAD-box-con 89.8 0.74 1.6E-05 42.9 5.7 33 313-348 196-228 (271)
372 PRK14950 DNA polymerase III su 89.8 1.1 2.3E-05 49.0 8.1 18 214-231 40-57 (585)
373 TIGR01425 SRP54_euk signal rec 89.8 1.8 3.8E-05 45.2 9.2 85 214-324 102-194 (429)
374 PRK06904 replicative DNA helic 89.7 3.1 6.8E-05 44.1 11.2 131 209-368 219-366 (472)
375 PRK14969 DNA polymerase III su 89.6 1.2 2.6E-05 47.9 8.2 18 214-231 40-57 (527)
376 KOG0333 U5 snRNP-like RNA heli 89.6 0.97 2.1E-05 47.4 7.0 89 262-371 516-608 (673)
377 COG0513 SrmB Superfamily II DN 89.6 1.3 2.8E-05 47.6 8.3 68 265-345 275-346 (513)
378 TIGR02524 dot_icm_DotB Dot/Icm 89.6 0.53 1.2E-05 48.0 5.1 23 214-237 136-158 (358)
379 PRK06067 flagellar accessory p 89.5 2.4 5.3E-05 40.2 9.5 22 214-235 27-48 (234)
380 TIGR01650 PD_CobS cobaltochela 89.5 1.7 3.7E-05 43.6 8.6 22 207-229 60-81 (327)
381 PRK00080 ruvB Holliday junctio 89.5 0.88 1.9E-05 45.7 6.7 17 214-230 53-69 (328)
382 PRK01297 ATP-dependent RNA hel 89.5 1.3 2.8E-05 46.9 8.3 72 263-347 335-410 (475)
383 PF12846 AAA_10: AAA-like doma 89.3 1.1 2.4E-05 43.6 7.2 41 214-277 3-43 (304)
384 KOG0742 AAA+-type ATPase [Post 89.3 0.32 7E-06 49.6 3.2 17 213-229 385-401 (630)
385 PRK00440 rfc replication facto 89.1 4.3 9.2E-05 40.2 11.3 16 214-229 40-55 (319)
386 PTZ00424 helicase 45; Provisio 89.1 1.5 3.2E-05 45.2 8.2 71 263-346 267-341 (401)
387 PRK05973 replicative DNA helic 89.1 0.78 1.7E-05 43.9 5.6 38 195-235 50-87 (237)
388 KOG2028 ATPase related to the 89.1 1.8 3.9E-05 43.8 8.2 60 203-285 152-212 (554)
389 PF13177 DNA_pol3_delta2: DNA 88.9 4.4 9.5E-05 36.3 10.1 30 339-369 101-130 (162)
390 PRK05896 DNA polymerase III su 88.9 1.3 2.9E-05 48.0 7.8 18 214-231 40-57 (605)
391 PRK08451 DNA polymerase III su 88.8 2.2 4.7E-05 45.9 9.3 29 338-367 115-143 (535)
392 PRK14951 DNA polymerase III su 88.7 0.97 2.1E-05 49.4 6.7 18 214-231 40-57 (618)
393 COG3267 ExeA Type II secretory 88.6 3 6.5E-05 40.2 9.1 17 214-230 53-69 (269)
394 PRK14948 DNA polymerase III su 88.6 0.82 1.8E-05 50.1 6.1 18 214-231 40-57 (620)
395 PF01637 Arch_ATPase: Archaeal 88.6 0.82 1.8E-05 42.6 5.4 14 214-227 22-35 (234)
396 TIGR00678 holB DNA polymerase 88.5 2.8 6.1E-05 38.3 8.8 28 338-369 94-121 (188)
397 PLN00206 DEAD-box ATP-dependen 88.5 1.6 3.4E-05 46.9 8.1 72 263-346 367-442 (518)
398 CHL00176 ftsH cell division pr 88.5 1.2 2.6E-05 49.0 7.3 16 214-229 218-233 (638)
399 TIGR01389 recQ ATP-dependent D 88.5 1.7 3.8E-05 47.4 8.6 70 264-346 225-298 (591)
400 TIGR00643 recG ATP-dependent D 88.4 1.6 3.5E-05 48.0 8.4 92 263-369 448-551 (630)
401 PRK07940 DNA polymerase III su 88.3 2.9 6.2E-05 43.3 9.5 16 214-229 38-53 (394)
402 TIGR02012 tigrfam_recA protein 88.2 0.81 1.8E-05 45.9 5.2 23 214-237 57-79 (321)
403 PF00437 T2SE: Type II/IV secr 88.2 0.5 1.1E-05 46.0 3.7 35 201-237 117-151 (270)
404 TIGR03346 chaperone_ClpB ATP-d 88.1 3.1 6.8E-05 47.5 10.6 21 210-230 192-212 (852)
405 PRK13850 type IV secretion sys 88.0 0.61 1.3E-05 51.4 4.7 47 214-285 141-187 (670)
406 PRK07133 DNA polymerase III su 88.0 2.1 4.5E-05 47.6 8.7 18 214-231 42-59 (725)
407 TIGR02639 ClpA ATP-dependent C 87.8 1.8 3.8E-05 48.7 8.3 26 340-366 553-578 (731)
408 cd00984 DnaB_C DnaB helicase C 87.8 1.6 3.4E-05 41.6 6.9 23 214-237 15-37 (242)
409 KOG0298 DEAD box-containing he 87.8 1.8 3.8E-05 50.0 8.0 147 214-369 376-539 (1394)
410 PF03237 Terminase_6: Terminas 87.6 9.5 0.00021 38.1 12.9 23 216-238 1-23 (384)
411 COG2909 MalT ATP-dependent tra 87.6 4.8 0.0001 45.0 11.0 28 342-369 131-158 (894)
412 TIGR03881 KaiC_arch_4 KaiC dom 87.6 3.7 7.9E-05 38.7 9.2 22 214-235 22-43 (229)
413 TIGR00665 DnaB replicative DNA 87.5 2.3 4.9E-05 44.6 8.5 26 210-237 194-219 (434)
414 PF14516 AAA_35: AAA-like doma 87.5 16 0.00034 36.8 14.2 39 197-237 17-55 (331)
415 TIGR02533 type_II_gspE general 87.4 1.1 2.3E-05 47.8 6.0 47 187-237 220-266 (486)
416 TIGR03158 cas3_cyano CRISPR-as 87.4 3.4 7.4E-05 42.1 9.5 71 263-347 272-342 (357)
417 PRK06964 DNA polymerase III su 87.3 4.4 9.6E-05 41.0 10.0 41 196-237 2-45 (342)
418 COG1074 RecB ATP-dependent exo 87.3 1.1 2.4E-05 52.7 6.4 61 207-286 12-72 (1139)
419 PRK06647 DNA polymerase III su 87.2 3 6.5E-05 45.3 9.2 18 214-231 40-57 (563)
420 TIGR01243 CDC48 AAA family ATP 87.2 1.2 2.7E-05 49.9 6.6 16 214-229 489-504 (733)
421 COG2255 RuvB Holliday junction 87.0 1.9 4.2E-05 42.1 6.8 40 319-366 89-128 (332)
422 TIGR02639 ClpA ATP-dependent C 87.0 4.5 9.7E-05 45.4 10.8 20 210-229 201-220 (731)
423 cd00544 CobU Adenosylcobinamid 86.9 5.6 0.00012 36.0 9.6 14 215-228 2-15 (169)
424 PF03796 DnaB_C: DnaB-like hel 86.8 2.5 5.5E-05 40.8 7.8 124 214-368 21-162 (259)
425 PRK11057 ATP-dependent DNA hel 86.8 2.2 4.7E-05 46.8 8.1 69 264-345 237-309 (607)
426 TIGR03345 VI_ClpV1 type VI sec 86.7 2.3 5E-05 48.5 8.4 27 340-367 668-694 (852)
427 PF06733 DEAD_2: DEAD_2; Inte 86.7 0.33 7.2E-06 44.0 1.5 47 307-354 113-159 (174)
428 KOG1001 Helicase-like transcri 86.6 1.9 4.1E-05 47.6 7.4 109 216-353 156-267 (674)
429 TIGR01970 DEAH_box_HrpB ATP-de 86.6 6.6 0.00014 44.6 11.8 71 265-345 211-285 (819)
430 COG0556 UvrB Helicase subunit 86.4 3.4 7.3E-05 43.8 8.6 110 264-408 447-560 (663)
431 cd00561 CobA_CobO_BtuR ATP:cor 86.3 12 0.00027 33.5 11.2 32 338-369 93-126 (159)
432 TIGR01420 pilT_fam pilus retra 86.3 2.1 4.6E-05 43.4 7.2 23 214-237 124-146 (343)
433 PRK13822 conjugal transfer cou 86.3 0.85 1.8E-05 50.1 4.5 48 214-286 226-273 (641)
434 TIGR00763 lon ATP-dependent pr 86.2 1.9 4E-05 48.8 7.3 16 214-229 349-364 (775)
435 PRK06321 replicative DNA helic 86.2 4 8.7E-05 43.3 9.4 23 214-237 228-250 (472)
436 PRK05298 excinuclease ABC subu 86.0 9.4 0.0002 42.3 12.5 76 263-351 446-525 (652)
437 PRK14954 DNA polymerase III su 86.0 3.2 7E-05 45.5 8.7 28 338-369 125-152 (620)
438 KOG1513 Nuclear helicase MOP-3 85.9 0.62 1.3E-05 51.1 3.1 116 262-406 317-455 (1300)
439 PF12775 AAA_7: P-loop contain 85.8 0.75 1.6E-05 45.1 3.5 26 202-228 24-49 (272)
440 PRK08006 replicative DNA helic 85.8 5.5 0.00012 42.2 10.2 27 209-237 222-248 (471)
441 PRK05800 cobU adenosylcobinami 85.7 4.3 9.2E-05 36.8 8.1 16 214-229 3-18 (170)
442 COG1219 ClpX ATP-dependent pro 85.6 0.65 1.4E-05 46.0 2.8 16 214-229 99-114 (408)
443 KOG1969 DNA replication checkp 85.6 3.4 7.3E-05 45.4 8.4 16 214-229 328-343 (877)
444 PRK05748 replicative DNA helic 85.6 3 6.5E-05 43.9 8.1 27 209-237 201-227 (448)
445 cd00079 HELICc Helicase superf 85.5 6.4 0.00014 32.8 8.8 75 263-350 28-106 (131)
446 TIGR01054 rgy reverse gyrase. 85.5 2 4.3E-05 50.6 7.3 74 264-346 327-404 (1171)
447 PRK13880 conjugal transfer cou 85.4 0.84 1.8E-05 50.2 4.0 23 213-235 176-198 (636)
448 TIGR03880 KaiC_arch_3 KaiC dom 85.4 2.6 5.6E-05 39.7 6.9 49 214-286 18-66 (224)
449 TIGR01243 CDC48 AAA family ATP 85.3 4.9 0.00011 45.1 10.1 16 214-229 214-229 (733)
450 CHL00095 clpC Clp protease ATP 85.3 1.9 4.1E-05 49.0 6.9 16 214-229 541-556 (821)
451 PF03969 AFG1_ATPase: AFG1-lik 85.2 10 0.00022 38.7 11.5 30 339-369 126-155 (362)
452 TIGR03600 phage_DnaB phage rep 85.1 5.4 0.00012 41.6 9.7 26 209-236 192-217 (421)
453 PRK10917 ATP-dependent DNA hel 85.1 3.5 7.7E-05 45.8 8.8 92 263-369 471-574 (681)
454 PRK14971 DNA polymerase III su 85.1 2.9 6.4E-05 45.8 8.0 28 338-369 119-146 (614)
455 TIGR01241 FtsH_fam ATP-depende 85.1 3 6.6E-05 44.5 8.0 16 214-229 90-105 (495)
456 PRK11034 clpA ATP-dependent Cl 84.9 3.4 7.5E-05 46.4 8.5 16 214-229 490-505 (758)
457 KOG2170 ATPase of the AAA+ sup 84.9 2.8 6.1E-05 41.3 6.8 28 341-369 179-206 (344)
458 PRK13767 ATP-dependent helicas 84.9 6 0.00013 45.4 10.7 74 265-347 286-365 (876)
459 TIGR00602 rad24 checkpoint pro 84.8 4.2 9E-05 44.7 8.9 17 214-230 112-128 (637)
460 PRK10416 signal recognition pa 84.7 6.6 0.00014 39.4 9.7 17 214-230 116-132 (318)
461 PRK13764 ATPase; Provisional 84.7 1.3 2.8E-05 48.2 4.9 27 209-237 255-281 (602)
462 PF04665 Pox_A32: Poxvirus A32 84.6 1.5 3.3E-05 42.0 4.9 23 214-237 15-37 (241)
463 COG3854 SpoIIIAA ncharacterize 84.6 5.7 0.00012 37.8 8.4 26 203-228 128-153 (308)
464 PRK08760 replicative DNA helic 84.4 3.6 7.7E-05 43.7 8.0 27 209-237 227-253 (476)
465 KOG0733 Nuclear AAA ATPase (VC 84.4 4.9 0.00011 43.3 8.8 54 171-229 506-562 (802)
466 PRK04841 transcriptional regul 84.3 6.2 0.00013 45.2 10.6 28 342-369 123-150 (903)
467 PRK09354 recA recombinase A; P 84.2 2 4.3E-05 43.6 5.7 21 214-234 62-82 (349)
468 PRK13695 putative NTPase; Prov 84.2 6.8 0.00015 35.2 8.8 17 214-230 2-18 (174)
469 KOG0058 Peptide exporter, ABC 84.1 2.9 6.4E-05 45.7 7.2 32 338-369 620-651 (716)
470 PRK11664 ATP-dependent RNA hel 84.1 11 0.00024 42.8 12.1 71 265-345 214-288 (812)
471 PRK06305 DNA polymerase III su 83.9 3.6 7.8E-05 43.4 7.8 18 214-231 41-58 (451)
472 cd01131 PilT Pilus retraction 83.9 1 2.2E-05 41.8 3.3 23 214-237 3-25 (198)
473 COG0210 UvrD Superfamily I DNA 83.7 3 6.4E-05 46.2 7.4 71 195-288 2-72 (655)
474 cd00983 recA RecA is a bacter 83.7 1.7 3.8E-05 43.6 5.0 23 214-237 57-79 (325)
475 COG1200 RecG RecG-like helicas 83.7 11 0.00024 41.2 11.3 93 263-370 473-577 (677)
476 PLN00020 ribulose bisphosphate 83.4 0.73 1.6E-05 46.9 2.2 16 214-229 150-165 (413)
477 TIGR00708 cobA cob(I)alamin ad 83.4 14 0.00031 33.6 10.4 31 339-369 96-128 (173)
478 PHA00350 putative assembly pro 83.3 9.2 0.0002 39.5 10.2 24 214-237 3-27 (399)
479 COG0542 clpA ATP-binding subun 83.1 2.2 4.9E-05 47.5 6.0 16 214-229 523-538 (786)
480 TIGR00767 rho transcription te 83.1 3.6 7.7E-05 42.5 7.0 18 210-228 167-184 (415)
481 PRK06871 DNA polymerase III su 83.0 4.7 0.0001 40.6 7.8 40 197-237 4-48 (325)
482 cd03239 ABC_SMC_head The struc 83.0 1 2.3E-05 41.0 3.0 30 339-368 115-144 (178)
483 cd03276 ABC_SMC6_euk Eukaryoti 83.0 7.2 0.00016 36.1 8.6 31 338-368 129-159 (198)
484 TIGR03345 VI_ClpV1 type VI sec 82.9 10 0.00022 43.3 11.4 30 200-229 192-225 (852)
485 PF01443 Viral_helicase1: Vira 82.9 1.1 2.4E-05 42.2 3.2 14 215-228 1-14 (234)
486 TIGR02767 TraG-Ti Ti-type conj 82.9 1.5 3.4E-05 47.9 4.6 49 213-286 212-260 (623)
487 TIGR02239 recomb_RAD51 DNA rep 82.7 9.4 0.0002 38.3 9.9 20 214-233 98-117 (316)
488 PRK07004 replicative DNA helic 82.7 6.4 0.00014 41.6 9.1 27 209-237 211-237 (460)
489 COG1203 CRISPR-associated heli 82.4 6 0.00013 44.4 9.2 57 261-321 438-502 (733)
490 KOG1514 Origin recognition com 82.3 16 0.00034 40.2 11.7 52 338-411 506-557 (767)
491 KOG2036 Predicted P-loop ATPas 82.3 9.9 0.00021 41.6 10.1 66 197-284 255-325 (1011)
492 KOG0341 DEAD-box protein abstr 82.3 11 0.00023 38.5 9.7 92 261-373 419-514 (610)
493 COG4098 comFA Superfamily II D 82.2 8.3 0.00018 38.7 8.9 93 263-369 305-399 (441)
494 PRK14970 DNA polymerase III su 82.1 4.3 9.3E-05 41.4 7.4 16 214-229 41-56 (367)
495 COG4185 Uncharacterized protei 81.8 0.62 1.3E-05 41.6 0.9 20 214-233 4-23 (187)
496 COG2109 BtuR ATP:corrinoid ade 81.8 6.4 0.00014 36.2 7.4 28 339-366 121-150 (198)
497 PRK08840 replicative DNA helic 81.8 10 0.00022 40.2 10.2 27 209-237 215-241 (464)
498 COG1222 RPT1 ATP-dependent 26S 81.8 8.1 0.00018 39.1 8.7 16 214-229 187-202 (406)
499 cd03115 SRP The signal recogni 81.6 7 0.00015 35.0 7.9 16 214-229 2-17 (173)
500 TIGR03754 conj_TOL_TraD conjug 81.5 4.5 9.8E-05 44.3 7.5 52 214-288 182-235 (643)
No 1
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-46 Score=376.38 Aligned_cols=268 Identities=43% Similarity=0.679 Sum_probs=222.0
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhh
Q 012319 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 249 (466)
Q Consensus 170 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~ 249 (466)
..+..|.+|.|+..++++|..+||..|||||..+||+++.+.. ||++.|.||||||+||.|||+..++...+.....
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~-DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~-- 254 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKV-DILGAAETGSGKTLAFGIPIVERLLESSDDSQEL-- 254 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccch-hcccccccCCCceeeecchhhhhhhhccchHhhh--
Confidence 4567899999999999999999999999999999999987755 9999999999999999999999776543211000
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHh
Q 012319 250 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 329 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~ 329 (466)
..-......+.+||++||||||.||.++|..++..+++++..++||.+...|.+.+...++|+||||||||.+|.
T Consensus 255 -----~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~ 329 (731)
T KOG0347|consen 255 -----SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIE 329 (731)
T ss_pred -----hhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHH
Confidence 001122233469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCH
Q 012319 330 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 409 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~ 409 (466)
.++.+...++.|++|||||||+|++.|++..+..|++.|+... ....+||++|||||+...
T Consensus 330 e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~-------------------~~~qrQTlVFSATlt~~~ 390 (731)
T KOG0347|consen 330 EDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQ-------------------KNRQRQTLVFSATLTLVL 390 (731)
T ss_pred hhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhh-------------------cccccceEEEEEEeehhh
Confidence 8877778899999999999999999999999999999998221 125789999999998544
Q ss_pred HHHHHHhhcccccccccCccccHHHHHHHhCCcccceEEecCchhhHhhhhhhhccC
Q 012319 410 DFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 466 (466)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iidl~~~~~~~~~l~e~~~~ 466 (466)
..........-.. ....-..++.|++..||+.+|.|||+++.+.+++.|.|+.|+
T Consensus 391 ~~~~~~~~k~~~k--~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~ 445 (731)
T KOG0347|consen 391 QQPLSSSRKKKDK--EDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIE 445 (731)
T ss_pred cChhHHhhhccch--hhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhc
Confidence 3322221111100 011234488999999999999999999999999999999875
No 2
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-46 Score=368.90 Aligned_cols=191 Identities=43% Similarity=0.672 Sum_probs=178.6
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
..+|.+|+|+.+|++++..+||..|||||..+||.++.++ |+++||.||||||.||.||+|++++-.
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgk--DIca~A~TGsGKTAAF~lPiLERLlYr----------- 246 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGK--DICACAATGSGKTAAFALPILERLLYR----------- 246 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcc--hhhheecccCCchhhhHHHHHHHHhcC-----------
Confidence 3689999999999999999999999999999999998776 999999999999999999999999753
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
+......|||||+|||+||.||+.+.++++..+.+.+++++||.+...|...++..|||+|+|||||++||.+.
T Consensus 247 ------Pk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs 320 (691)
T KOG0338|consen 247 ------PKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNS 320 (691)
T ss_pred ------cccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccC
Confidence 33445679999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 332 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 332 ~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
..+.|++|.+||+||||+||+.||.++|..|+..++ +.|||++||||++.
T Consensus 321 --~sf~ldsiEVLvlDEADRMLeegFademnEii~lcp------------------------k~RQTmLFSATMte 370 (691)
T KOG0338|consen 321 --PSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCP------------------------KNRQTMLFSATMTE 370 (691)
T ss_pred --CCccccceeEEEechHHHHHHHHHHHHHHHHHHhcc------------------------ccccceeehhhhHH
Confidence 357899999999999999999999999999999999 88999999999973
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-43 Score=339.95 Aligned_cols=191 Identities=45% Similarity=0.754 Sum_probs=177.9
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhh
Q 012319 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 249 (466)
Q Consensus 170 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~ 249 (466)
..+.+|.+|++.+.+++++..+||..||+||.++||.++.++ |||+.|.||||||.+|+|||+++|+..+
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~--dvIglAeTGSGKT~afaLPIl~~LL~~p-------- 127 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGR--DVIGLAETGSGKTGAFALPILQRLLQEP-------- 127 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCC--cEEEEeccCCCchhhhHHHHHHHHHcCC--------
Confidence 356899999999999999999999999999999999996554 9999999999999999999999998642
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHh
Q 012319 250 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 329 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~ 329 (466)
..+++|||+||||||.||...|..++..++++++++.||++...+...+..+|||||||||+|++++.
T Consensus 128 ------------~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~ 195 (476)
T KOG0330|consen 128 ------------KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLE 195 (476)
T ss_pred ------------CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHH
Confidence 24799999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 330 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
+ .+.+.|.++++||+||||++|++.|...+.+|+..+| ..+|+++||||++..
T Consensus 196 ~--Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip------------------------~erqt~LfsATMt~k 248 (476)
T KOG0330|consen 196 N--TKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP------------------------RERQTFLFSATMTKK 248 (476)
T ss_pred h--ccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC------------------------ccceEEEEEeecchh
Confidence 4 3458899999999999999999999999999999999 789999999999844
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-40 Score=338.59 Aligned_cols=194 Identities=40% Similarity=0.611 Sum_probs=177.8
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
..|++++|++.+..++...||..|||||.+.||.++.++ |+++.|.|||||||+|+||++.++.....
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~Gr--D~v~iA~TGSGKTLay~lP~i~~l~~~~~---------- 158 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGR--DLVGIARTGSGKTLAYLLPAIVHLNNEQG---------- 158 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCC--ceEEEeccCCcchhhhhhHHHHHHHhccc----------
Confidence 389999999999999999999999999999999997665 99999999999999999999999975311
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCC
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 332 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~ 332 (466)
......+|++|||+||||||.||...+..++..+.+++++++||.....|.+.+..+.+|+|||||||+++|..+
T Consensus 159 ----~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g- 233 (519)
T KOG0331|consen 159 ----KLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG- 233 (519)
T ss_pred ----cccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC-
Confidence 234556899999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 333 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 333 ~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
...|++|.|||+||||+||+|||..+|..|+..++. ..+|+|+||||++..
T Consensus 234 --~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~-----------------------~~rQtlm~saTwp~~ 284 (519)
T KOG0331|consen 234 --SLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPR-----------------------PDRQTLMFSATWPKE 284 (519)
T ss_pred --CccccceeEEEeccHHhhhccccHHHHHHHHHhcCC-----------------------CcccEEEEeeeccHH
Confidence 488999999999999999999999999999999952 456999999999853
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-39 Score=340.34 Aligned_cols=188 Identities=43% Similarity=0.731 Sum_probs=171.9
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
..|.+|+|++.+++++.++||..|||||.++||.++.++ |++++|+||||||++|+||+++++...
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~--Dvi~~A~TGsGKT~Af~lP~l~~l~~~------------ 94 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGR--DVLGQAQTGTGKTAAFLLPLLQKILKS------------ 94 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC--CEEEECCCCChHHHHHHHHHHHHHhcc------------
Confidence 679999999999999999999999999999999997765 999999999999999999999997521
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
.......+|||+||||||.||++.+..++.+. ++++++++||.+...+...+..++||||||||||++++.++
T Consensus 95 ------~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~ 168 (513)
T COG0513 95 ------VERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG 168 (513)
T ss_pred ------cccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC
Confidence 01111119999999999999999999999998 79999999999999999999989999999999999999765
Q ss_pred CCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 332 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 332 ~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
.+.++.+++||+||||+|+++||.+.+..|+..++ ..+|+++||||++.
T Consensus 169 ---~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p------------------------~~~qtllfSAT~~~ 217 (513)
T COG0513 169 ---KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALP------------------------PDRQTLLFSATMPD 217 (513)
T ss_pred ---CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC------------------------cccEEEEEecCCCH
Confidence 58899999999999999999999999999999998 67999999999985
No 6
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-39 Score=324.53 Aligned_cols=201 Identities=40% Similarity=0.560 Sum_probs=180.1
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhh
Q 012319 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 249 (466)
Q Consensus 170 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~ 249 (466)
..+..|.+|+|+..++++|...+|..||.||+.+||.+|.+. |||+.|.||||||+||++|+|++|++.
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~--DvlGAAkTGSGKTLAFlvPvlE~L~r~--------- 134 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGH--DVLGAAKTGSGKTLAFLVPVLEALYRL--------- 134 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCc--ccccccccCCCceeeehHHHHHHHHHc---------
Confidence 345789999999999999999999999999999999997665 999999999999999999999999976
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHh
Q 012319 250 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 329 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~ 329 (466)
+..+..|..||||.||||||.|++..|.+++++..+..+.++||....... ..-.+.+|||||||||+.||.
T Consensus 135 -------kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~-eRi~~mNILVCTPGRLLQHmd 206 (758)
T KOG0343|consen 135 -------KWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFEL-ERISQMNILVCTPGRLLQHMD 206 (758)
T ss_pred -------CCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHH-HhhhcCCeEEechHHHHHHhh
Confidence 577888999999999999999999999999999999999999999875543 344578999999999999997
Q ss_pred CCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCH
Q 012319 330 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 409 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~ 409 (466)
.. ..+..+++.+||+||||+||||||...+..|++.|| +.+||++||||-+.+.
T Consensus 207 e~--~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP------------------------~~RQTLLFSATqt~sv 260 (758)
T KOG0343|consen 207 EN--PNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLP------------------------KKRQTLLFSATQTKSV 260 (758)
T ss_pred hc--CCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCC------------------------hhheeeeeecccchhH
Confidence 53 346789999999999999999999999999999999 7899999999998765
Q ss_pred HHHHHH
Q 012319 410 DFRKKL 415 (466)
Q Consensus 410 ~~~~~l 415 (466)
.-+.+|
T Consensus 261 kdLaRL 266 (758)
T KOG0343|consen 261 KDLARL 266 (758)
T ss_pred HHHHHh
Confidence 333333
No 7
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.8e-38 Score=313.07 Aligned_cols=191 Identities=38% Similarity=0.584 Sum_probs=174.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
..|.++.|++.+++++.++||..+|++|..+|+.++.+. |+++.|.||||||+||+||+++.+++.+
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gk--Dvl~~AKTGtGKTlAFLiPaie~l~k~~----------- 148 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGK--DVLAAAKTGTGKTLAFLLPAIELLRKLK----------- 148 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCc--cceeeeccCCCceeeehhHHHHHHHhcc-----------
Confidence 567788999999999999999999999999999997665 9999999999999999999999998763
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
.....+..||||+|||+||.|++.+++.+..+. ++.+..++||++.......+..+++|+|||||||+++|.+.
T Consensus 149 -----~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt 223 (543)
T KOG0342|consen 149 -----FKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNT 223 (543)
T ss_pred -----cCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcC
Confidence 344578899999999999999999999999988 89999999999988888888889999999999999999875
Q ss_pred CCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 332 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 332 ~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
.. +.+..++++|+||||+|+++||...|.+|+..+| ..+|+++||||.+.
T Consensus 224 ~~--f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp------------------------k~rqt~LFSAT~~~ 273 (543)
T KOG0342|consen 224 SG--FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILP------------------------KQRQTLLFSATQPS 273 (543)
T ss_pred Cc--chhhccceeEeecchhhhhcccHHHHHHHHHhcc------------------------ccceeeEeeCCCcH
Confidence 43 4456779999999999999999999999999999 78999999999974
No 8
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-38 Score=314.24 Aligned_cols=210 Identities=31% Similarity=0.489 Sum_probs=176.9
Q ss_pred cCccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
-..|..|||++.+...|.. +++..||.+|.++||.+|.++ |++|.|+||||||++|+||++++|.....
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~gr--D~lV~aQTGSGKTLAYllPiVq~Lq~m~~-------- 204 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGR--DALVRAQTGSGKTLAYLLPIVQSLQAMEP-------- 204 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCc--ceEEEcCCCCcccHHHHHHHHHHHHhcCc--------
Confidence 3689999999999999987 899999999999999997754 99999999999999999999999976532
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCc-EEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHh
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV-RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 329 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~-~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~ 329 (466)
+.++..|+.||||+||||||.|+|+.+.++.+.+.+ -.+.+.||.........++.+++|||+|||||+++|.
T Consensus 205 ------ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLk 278 (708)
T KOG0348|consen 205 ------KIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLK 278 (708)
T ss_pred ------cccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHh
Confidence 345678999999999999999999999999886543 3467889999999999999999999999999999998
Q ss_pred CCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCH
Q 012319 330 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 409 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~ 409 (466)
+. ..+.++.++|||+||||+|+++||...|..|++.+...+. ..|....- ...+|.+++||||+...
T Consensus 279 nT--~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~---------~e~~~~~l--p~q~q~mLlSATLtd~V 345 (708)
T KOG0348|consen 279 NT--KSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQN---------AECKDPKL--PHQLQNMLLSATLTDGV 345 (708)
T ss_pred cc--chheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccc---------hhcccccc--cHHHHhHhhhhhhHHHH
Confidence 64 3477899999999999999999999999999999953211 11111000 12489999999997554
Q ss_pred H
Q 012319 410 D 410 (466)
Q Consensus 410 ~ 410 (466)
+
T Consensus 346 ~ 346 (708)
T KOG0348|consen 346 N 346 (708)
T ss_pred H
Confidence 3
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-37 Score=293.86 Aligned_cols=219 Identities=42% Similarity=0.626 Sum_probs=187.0
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
...|+.|||++++.+.|..+|+..|||||..|||.+|.++ |+|.||.||||||++|.||++++|-+.
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGr--dcig~AkTGsGKT~AFaLPil~rLsed----------- 72 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGR--DCIGCAKTGSGKTAAFALPILNRLSED----------- 72 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhccc--ccccccccCCCcchhhhHHHHHhhccC-----------
Confidence 4789999999999999999999999999999999998766 999999999999999999999999542
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
..+..+||++|||+||.|+.+.|..+++..++++++++||++.-.+...+..++||||+|||||.+++.+.
T Consensus 73 ---------P~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn 143 (442)
T KOG0340|consen 73 ---------PYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSN 143 (442)
T ss_pred ---------CCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred -CCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHH
Q 012319 332 -EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 410 (466)
Q Consensus 332 -~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~ 410 (466)
......+.+++++|+||||+|++.+|-+.+..|+..+| .+||+++||||+++.
T Consensus 144 ~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP------------------------~~RQtLlfSATitd~-- 197 (442)
T KOG0340|consen 144 LGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLP------------------------KPRQTLLFSATITDT-- 197 (442)
T ss_pred CccchhhhhceeeEEecchhhhhccchhhHHhhhhccCC------------------------CccceEEEEeehhhH--
Confidence 33345589999999999999999999999999999998 779999999999643
Q ss_pred HHHHHhhccccc-----ccccCccccHHHHHHHh
Q 012319 411 FRKKLKHGSLKL-----KQSVNGLNSIETLSERA 439 (466)
Q Consensus 411 ~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~ 439 (466)
.+.+.....+. -....++...+.|.++|
T Consensus 198 -i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~y 230 (442)
T KOG0340|consen 198 -IKQLFGCPITKSIAFELEVIDGVSTVETLYQGY 230 (442)
T ss_pred -HHHhhcCCcccccceEEeccCCCCchhhhhhhe
Confidence 33333222221 11123555566666665
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2e-36 Score=322.53 Aligned_cols=198 Identities=32% Similarity=0.510 Sum_probs=177.1
Q ss_pred ccccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhh
Q 012319 167 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK 246 (466)
Q Consensus 167 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~ 246 (466)
..|.+..+|.+++|++.++++|.++||..|||||.++||.++.++ |+|++||||||||++|+||++.+++...
T Consensus 124 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~--dvI~~ApTGSGKTlaylLP~l~~i~~~~----- 196 (545)
T PTZ00110 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGR--DMIGIAETGSGKTLAFLLPAIVHINAQP----- 196 (545)
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC--CEEEEeCCCChHHHHHHHHHHHHHHhcc-----
Confidence 345677899999999999999999999999999999999997655 9999999999999999999999986431
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHH
Q 012319 247 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 326 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~ 326 (466)
......+|.+|||+|||+||.|+.+.+..++...++++.+++||.....+...+..+++|||+||++|++
T Consensus 197 ----------~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d 266 (545)
T PTZ00110 197 ----------LLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLID 266 (545)
T ss_pred ----------cccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 1122346899999999999999999999999888999999999999988888899999999999999999
Q ss_pred HHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 327 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 327 ~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
+|..+ ...|+++++|||||||+|++++|..++..|+..++ ..+|+|+||||++
T Consensus 267 ~l~~~---~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~------------------------~~~q~l~~SAT~p 319 (545)
T PTZ00110 267 FLESN---VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------------------------PDRQTLMWSATWP 319 (545)
T ss_pred HHHcC---CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC------------------------CCCeEEEEEeCCC
Confidence 99654 36789999999999999999999999999999887 6789999999997
Q ss_pred CC
Q 012319 407 LS 408 (466)
Q Consensus 407 ~~ 408 (466)
..
T Consensus 320 ~~ 321 (545)
T PTZ00110 320 KE 321 (545)
T ss_pred HH
Confidence 43
No 11
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-37 Score=305.52 Aligned_cols=200 Identities=37% Similarity=0.563 Sum_probs=186.0
Q ss_pred hhcccccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHH
Q 012319 164 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREK 243 (466)
Q Consensus 164 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~ 243 (466)
....++.+..+|..+++...|+.++....|..|||||.+++|.++.++ ||+..|.||||||.||+.|++.|++...
T Consensus 214 ~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgr--dvigIAktgSgktaAfi~pm~~himdq~-- 289 (731)
T KOG0339|consen 214 SGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGR--DVIGIAKTGSGKTAAFIWPMIVHIMDQP-- 289 (731)
T ss_pred ccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccc--cchheeeccCcchhHHHHHHHHHhcchh--
Confidence 456677889999999999999999999999999999999999997665 9999999999999999999999998654
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHH
Q 012319 244 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 323 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~ 323 (466)
......+|.+|||||||+||.||+.+++++++..+++++++|||.+..+|...|..++.||||||||
T Consensus 290 -------------eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgR 356 (731)
T KOG0339|consen 290 -------------ELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGR 356 (731)
T ss_pred -------------hhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHH
Confidence 2345678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEee
Q 012319 324 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 403 (466)
Q Consensus 324 L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SA 403 (466)
|++++ ..+..+|+++.||||||||+|+++||..+|..|..++. +.+|+|+|||
T Consensus 357 lid~V---kmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir------------------------pdrQtllFsa 409 (731)
T KOG0339|consen 357 LIDMV---KMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR------------------------PDRQTLLFSA 409 (731)
T ss_pred HHHHH---HhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcC------------------------CcceEEEeec
Confidence 99999 44568899999999999999999999999999999998 8899999999
Q ss_pred ecCC
Q 012319 404 TIAL 407 (466)
Q Consensus 404 Tl~~ 407 (466)
|++-
T Consensus 410 Tf~~ 413 (731)
T KOG0339|consen 410 TFKK 413 (731)
T ss_pred cchH
Confidence 9974
No 12
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=298.71 Aligned_cols=195 Identities=37% Similarity=0.612 Sum_probs=168.2
Q ss_pred CccccCCC--CHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 173 DAWNELRL--HPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 173 ~~f~~l~l--~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
.+|++|+. +++++.++...||...||+|..+||.++.+. ||++.|+||||||+||++|+++.+++...+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~K--DVvveavTGSGKTlAFllP~le~i~rr~~~------- 74 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNK--DVVVEAVTGSGKTLAFLLPMLEIIYRREAK------- 74 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCC--ceEEEcCCCCCchhhHHHHHHHHHHhhccC-------
Confidence 46777765 4999999999999999999999999996655 999999999999999999999999765321
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC-CCcEEEEEECCCCHHHHHHHHh-cCCcEEEeCcHHHHHHH
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG-INVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELM 328 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~-~~~~v~~~~gg~~~~~~~~~l~-~~~dIiV~TP~~L~~~l 328 (466)
. ......+|||+||||||.||.+++..+..+ .++.+.+++||.+.......++ .+++|+|||||||.+++
T Consensus 75 -------~-~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~ 146 (567)
T KOG0345|consen 75 -------T-PPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDIL 146 (567)
T ss_pred -------C-CccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHH
Confidence 1 112468999999999999999999988877 5788999999998877766665 57899999999999999
Q ss_pred hCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 329 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 329 ~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
.+. ...+++.++++||+||||+++||||..+++.|+..|| +.|+|=+||||....
T Consensus 147 ~~~-~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LP------------------------KQRRTGLFSATq~~~ 201 (567)
T KOG0345|consen 147 QRE-AEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLP------------------------KQRRTGLFSATQTQE 201 (567)
T ss_pred hch-hhhccccccceEEecchHhHhcccHHHHHHHHHHhcc------------------------cccccccccchhhHH
Confidence 763 3345577999999999999999999999999999999 778999999999755
Q ss_pred H
Q 012319 409 A 409 (466)
Q Consensus 409 ~ 409 (466)
.
T Consensus 202 v 202 (567)
T KOG0345|consen 202 V 202 (567)
T ss_pred H
Confidence 4
No 13
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=7.2e-38 Score=302.27 Aligned_cols=246 Identities=30% Similarity=0.497 Sum_probs=204.6
Q ss_pred hcccccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHh
Q 012319 165 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 244 (466)
Q Consensus 165 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~ 244 (466)
...+|+++.+|.++.++..+++.|.+.|+.+|||||.+.||.+|.++ |+|..|-||||||++|+||++...+...-
T Consensus 162 Gd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGR--DmIGIAfTGSGKTlvFvLP~imf~LeqE~-- 237 (610)
T KOG0341|consen 162 GDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGR--DMIGIAFTGSGKTLVFVLPVIMFALEQEM-- 237 (610)
T ss_pred CCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecC--ceeeEEeecCCceEEEeHHHHHHHHHHHh--
Confidence 45667889999999999999999999999999999999999997665 99999999999999999999998876532
Q ss_pred hhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC------CcEEEEEECCCCHHHHHHHHhcCCcEEE
Q 012319 245 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI------NVRVVPIVGGMSTEKQERLLKARPELVV 318 (466)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~------~~~v~~~~gg~~~~~~~~~l~~~~dIiV 318 (466)
..+.....+|..|||||+|+||.|+++.+..++..+ .++.+.++||.+...+...++.+.+|+|
T Consensus 238 ----------~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivV 307 (610)
T KOG0341|consen 238 ----------MLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVV 307 (610)
T ss_pred ----------cCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEE
Confidence 124556779999999999999999999888877533 4688889999999999999999999999
Q ss_pred eCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceE
Q 012319 319 GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 398 (466)
Q Consensus 319 ~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ 398 (466)
+|||||.++|. .+...|.-++||++||||+|+|+||.+.|..|+.++. ..+||
T Consensus 308 ATPGRL~DmL~---KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK------------------------~QRQT 360 (610)
T KOG0341|consen 308 ATPGRLMDMLA---KKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK------------------------GQRQT 360 (610)
T ss_pred cCcchHHHHHH---HhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh------------------------hhhhe
Confidence 99999999995 4457889999999999999999999999999999997 67999
Q ss_pred EEEeeecCCCHHH-HHHHhhcccccccccCccccHHHHHHHhCCcccceEEecC
Q 012319 399 LVFSATIALSADF-RKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLT 451 (466)
Q Consensus 399 ll~SATl~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iidl~ 451 (466)
++||||++...++ ++..-...........++.++..+.+.-++++.+.+|++-
T Consensus 361 LLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylL 414 (610)
T KOG0341|consen 361 LLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLL 414 (610)
T ss_pred eeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHH
Confidence 9999999865433 3322222222222334666777777777777777666653
No 14
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.3e-36 Score=299.77 Aligned_cols=230 Identities=33% Similarity=0.521 Sum_probs=193.5
Q ss_pred hhcccccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHH
Q 012319 164 SEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREK 243 (466)
Q Consensus 164 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~ 243 (466)
....+|.++.+|.+.+++..+++.+...||..|||||+++||..+.++ |+|+.|.||||||++|++|++..+......
T Consensus 236 kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~r--D~igvaETgsGktaaf~ipLl~~IsslP~~ 313 (673)
T KOG0333|consen 236 KGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNR--DPIGVAETGSGKTAAFLIPLLIWISSLPPM 313 (673)
T ss_pred cCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccC--CeeeEEeccCCccccchhhHHHHHHcCCCc
Confidence 345678899999999999999999999999999999999999886665 999999999999999999999988654211
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHH
Q 012319 244 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 323 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~ 323 (466)
. .-...-.+|+++||+|||+||+||..+-.++++.++++++.++||.+.+++.-.+..+|+|+|||||+
T Consensus 314 ~-----------~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgr 382 (673)
T KOG0333|consen 314 A-----------RLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGR 382 (673)
T ss_pred c-----------hhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchH
Confidence 0 00123458999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCcc-ccchhhhhcccCCCCceEEEEe
Q 012319 324 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSE-QTQTCVTVSSLQRKKRQTLVFS 402 (466)
Q Consensus 324 L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Q~ll~S 402 (466)
|++.|.+ ..+.|+++.+||+||||+|+||||.+++..||.++|..+.++..... ...+......-.++.+|+++||
T Consensus 383 Lid~Len---r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mft 459 (673)
T KOG0333|consen 383 LIDSLEN---RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFT 459 (673)
T ss_pred HHHHHHH---HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEe
Confidence 9999954 46889999999999999999999999999999999977665422111 1222233334445789999999
Q ss_pred eecCCCH
Q 012319 403 ATIALSA 409 (466)
Q Consensus 403 ATl~~~~ 409 (466)
||++...
T Consensus 460 atm~p~v 466 (673)
T KOG0333|consen 460 ATMPPAV 466 (673)
T ss_pred cCCChHH
Confidence 9998553
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-35 Score=307.71 Aligned_cols=196 Identities=31% Similarity=0.545 Sum_probs=173.0
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
..|++|+|++.++++|..+||..|||+|.++||.++.++ |++++||||||||++|++|++++++.....
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~--dvi~~ApTGsGKTla~llp~l~~l~~~~~~--------- 76 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGR--DVAGQAQTGTGKTMAFLTATFHYLLSHPAP--------- 76 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--cEEEECCCCchHHHHHHHHHHHHHHhcccc---------
Confidence 689999999999999999999999999999999997654 999999999999999999999999754211
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCC
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 332 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~ 332 (466)
......++++|||+|||+||.|+++.+..++...++++..++||.....+...+..+++||||||++|++++..+
T Consensus 77 ----~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~- 151 (423)
T PRK04837 77 ----EDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN- 151 (423)
T ss_pred ----cccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-
Confidence 011234689999999999999999999999999999999999999988888888889999999999999999653
Q ss_pred CccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 333 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 333 ~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
.+.++.+++|||||||+|++++|...+..|+..++.. ..+|+++||||++..
T Consensus 152 --~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~----------------------~~~~~~l~SAT~~~~ 203 (423)
T PRK04837 152 --HINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA----------------------NQRLNMLFSATLSYR 203 (423)
T ss_pred --CcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCc----------------------cceeEEEEeccCCHH
Confidence 4678999999999999999999999999999988732 357899999999743
No 16
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-37 Score=288.39 Aligned_cols=244 Identities=32% Similarity=0.539 Sum_probs=211.7
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
-..|+++.|...++..+++.||..|+|||.++||.+|.++ |+++.|..|+|||.+|++|+|+.+
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGr--diLaRaKNGTGKT~a~~IP~Leki-------------- 147 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGR--DILARAKNGTGKTAAYCIPVLEKI-------------- 147 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecch--hhhhhccCCCCCccceechhhhhc--------------
Confidence 4679999999999999999999999999999999997655 999999999999999999999988
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
++.....+++|++||||||.|+.+.++.+++++++.+.+.+||++..+..-.+....+++||||||+++++..+
T Consensus 148 ------d~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg 221 (459)
T KOG0326|consen 148 ------DPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG 221 (459)
T ss_pred ------CccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc
Confidence 23445679999999999999999999999999999999999999998888888899999999999999999654
Q ss_pred CCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC-HH
Q 012319 332 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-AD 410 (466)
Q Consensus 332 ~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~-~~ 410 (466)
...++.+.+||+||||.||+..|...+..++..|| +.+|+++||||+|.. ..
T Consensus 222 ---Va~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP------------------------~~rQillySATFP~tVk~ 274 (459)
T KOG0326|consen 222 ---VADLSDCVILVMDEADKLLSVDFQPIVEKLISFLP------------------------KERQILLYSATFPLTVKG 274 (459)
T ss_pred ---cccchhceEEEechhhhhhchhhhhHHHHHHHhCC------------------------ccceeeEEecccchhHHH
Confidence 57799999999999999999999999999999999 789999999999964 46
Q ss_pred HHHHHhhc-----------------ccccccccCccccHHHHHHHhCCcccceEEecCc-hhhHhhhhhhhc
Q 012319 411 FRKKLKHG-----------------SLKLKQSVNGLNSIETLSERAGMRANVAIVDLTN-VSVLANKLEESF 464 (466)
Q Consensus 411 ~~~~l~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~iidl~~-~~~~~~~l~e~~ 464 (466)
|+++--.. .+.......+++.+..|..++.+.+.+.|++.++ .+.+|-+|.|..
T Consensus 275 Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelG 346 (459)
T KOG0326|consen 275 FMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELG 346 (459)
T ss_pred HHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhcc
Confidence 66542111 1222333447888999999999988777777776 578888888753
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2e-35 Score=313.76 Aligned_cols=206 Identities=36% Similarity=0.549 Sum_probs=178.4
Q ss_pred ccccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhh
Q 012319 167 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK 246 (466)
Q Consensus 167 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~ 246 (466)
..|.++.+|.+++|++.++++|...||..|||+|.++||.++.++ |+|++||||||||++|++|++.+++..+..
T Consensus 115 ~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~--dviv~ApTGSGKTlayllPil~~l~~~~~~--- 189 (518)
T PLN00206 115 AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGR--SLLVSADTGSGKTASFLVPIISRCCTIRSG--- 189 (518)
T ss_pred CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC--CEEEEecCCCCccHHHHHHHHHHHHhhccc---
Confidence 345678899999999999999999999999999999999997554 999999999999999999999998743211
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHH
Q 012319 247 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 326 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~ 326 (466)
......++++|||+|||+||.|+.+.+..++...++++..++||.....+...+..+++|||+||++|++
T Consensus 190 ----------~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~ 259 (518)
T PLN00206 190 ----------HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLID 259 (518)
T ss_pred ----------cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHH
Confidence 1112357899999999999999999999999988999999999999888888888899999999999999
Q ss_pred HHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 327 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 327 ~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
++... ...++++.+|||||||+|+++||...+..|+..++ .+|+++||||++
T Consensus 260 ~l~~~---~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-------------------------~~q~l~~SATl~ 311 (518)
T PLN00206 260 LLSKH---DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-------------------------QPQVLLFSATVS 311 (518)
T ss_pred HHHcC---CccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-------------------------CCcEEEEEeeCC
Confidence 99654 46789999999999999999999999999998875 479999999998
Q ss_pred CCH-HHHHHH
Q 012319 407 LSA-DFRKKL 415 (466)
Q Consensus 407 ~~~-~~~~~l 415 (466)
... .+..++
T Consensus 312 ~~v~~l~~~~ 321 (518)
T PLN00206 312 PEVEKFASSL 321 (518)
T ss_pred HHHHHHHHHh
Confidence 643 334443
No 18
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-36 Score=305.07 Aligned_cols=207 Identities=36% Similarity=0.548 Sum_probs=180.4
Q ss_pred cccccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhh
Q 012319 166 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 245 (466)
Q Consensus 166 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~ 245 (466)
...|..+..|.+-.+...+..++...+|..|||||+.+||.+..++ |+++||+||||||.||++|++.++++.+...
T Consensus 67 ~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Gr--dl~acAqTGsGKT~aFLiPii~~~~~~~~~~- 143 (482)
T KOG0335|consen 67 RDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGR--DLMACAQTGSGKTAAFLIPIISYLLDEGPED- 143 (482)
T ss_pred CccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCC--ceEEEccCCCcchHHHHHHHHHHHHhcCccc-
Confidence 3345556688888899999999999999999999999999995554 9999999999999999999999998763211
Q ss_pred hhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHH
Q 012319 246 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 325 (466)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~ 325 (466)
.........|++|||+||||||.|++++.+++.-..+++++.+|||.+...+.+.+..+|||+|||||+|.
T Consensus 144 ---------~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~ 214 (482)
T KOG0335|consen 144 ---------RGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLK 214 (482)
T ss_pred ---------CcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhh
Confidence 00112224799999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHhCCCCccccCCcccEEEecccchhhc-cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeee
Q 012319 326 ELMSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 404 (466)
Q Consensus 326 ~~l~~~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SAT 404 (466)
+++..+ .+.|..+++|||||||+|+| |+|...|..|+.++...+. ..+|+++||||
T Consensus 215 d~~e~g---~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~--------------------~~~qt~mFSAt 271 (482)
T KOG0335|consen 215 DLIERG---KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPK--------------------NNRQTLLFSAT 271 (482)
T ss_pred hhhhcc---eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCc--------------------cceeEEEEecc
Confidence 999654 58899999999999999999 9999999999988875432 57999999999
Q ss_pred cCC
Q 012319 405 IAL 407 (466)
Q Consensus 405 l~~ 407 (466)
++.
T Consensus 272 fp~ 274 (482)
T KOG0335|consen 272 FPK 274 (482)
T ss_pred CCh
Confidence 974
No 19
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-36 Score=293.18 Aligned_cols=202 Identities=34% Similarity=0.526 Sum_probs=177.2
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
...|.+|+|.+++++++..+||..||-||..+||.+|.+. |+++.|.||||||+||+||+++.++.....
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgK--DvvarArTGSGKT~AYliPllqkll~~k~t-------- 87 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGK--DVVARARTGSGKTAAYLIPLLQKLLAEKKT-------- 87 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCc--ceeeeeccCCCchHHHHHHHHHHHHHhhhc--------
Confidence 3789999999999999999999999999999999997655 999999999999999999999999876422
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC--cEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHh
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN--VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 329 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~--~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~ 329 (466)
.....++.++||+||||||.|++..+.++...++ +++.-+...++.......+...|+|||+||++|+.++.
T Consensus 88 ------~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~ 161 (569)
T KOG0346|consen 88 ------NDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLA 161 (569)
T ss_pred ------ccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHh
Confidence 1345688999999999999999999999877664 56666676777777778888999999999999999997
Q ss_pred CCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCH
Q 012319 330 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 409 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~ 409 (466)
.+. ...+.++++|||||||.|+..||.+.+..|..+|| +..|.++||||++...
T Consensus 162 ~~~--~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LP------------------------r~~Q~~LmSATl~dDv 215 (569)
T KOG0346|consen 162 AGV--LEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLP------------------------RIYQCFLMSATLSDDV 215 (569)
T ss_pred hcc--chhhhheeeEEechhhhhhhcccHHHHHHHHHhCC------------------------chhhheeehhhhhhHH
Confidence 653 25688999999999999999999999999999999 6789999999998766
Q ss_pred HHHHHH
Q 012319 410 DFRKKL 415 (466)
Q Consensus 410 ~~~~~l 415 (466)
.-++.|
T Consensus 216 ~~LKkL 221 (569)
T KOG0346|consen 216 QALKKL 221 (569)
T ss_pred HHHHHH
Confidence 666654
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.8e-35 Score=306.15 Aligned_cols=199 Identities=38% Similarity=0.675 Sum_probs=174.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 012319 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 253 (466)
Q Consensus 174 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 253 (466)
+|.+|+|++.++++|.++||..|||+|.++||.++.+. |+|++||||||||++|++|+++.+.....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~--dvlv~apTGsGKTla~~lpil~~l~~~~~----------- 68 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGR--DLMASAQTGTGKTAGFTLPLLQHLITRQP----------- 68 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEECCCCCcHHHHHHHHHHHHhhhccc-----------
Confidence 68899999999999999999999999999999997654 99999999999999999999999864311
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCC
Q 012319 254 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 333 (466)
Q Consensus 254 ~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~ 333 (466)
.......+++|||+|||+||.|+++.+..++...++++..++||.+...+...+..+++||||||++|++++...
T Consensus 69 ---~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~-- 143 (456)
T PRK10590 69 ---HAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN-- 143 (456)
T ss_pred ---ccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC--
Confidence 011223568999999999999999999999999999999999999998888888889999999999999988543
Q ss_pred ccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC-HHHH
Q 012319 334 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFR 412 (466)
Q Consensus 334 ~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~-~~~~ 412 (466)
...++.+++|||||||+|++++|...+..++..++ ..+|+++||||++.. ..+.
T Consensus 144 -~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~------------------------~~~q~l~~SAT~~~~~~~l~ 198 (456)
T PRK10590 144 -AVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLP------------------------AKRQNLLFSATFSDDIKALA 198 (456)
T ss_pred -CcccccceEEEeecHHHHhccccHHHHHHHHHhCC------------------------ccCeEEEEeCCCcHHHHHHH
Confidence 36789999999999999999999999999999887 678999999999863 3444
Q ss_pred HHH
Q 012319 413 KKL 415 (466)
Q Consensus 413 ~~l 415 (466)
.++
T Consensus 199 ~~~ 201 (456)
T PRK10590 199 EKL 201 (456)
T ss_pred HHH
Confidence 444
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-34 Score=309.87 Aligned_cols=196 Identities=37% Similarity=0.614 Sum_probs=171.7
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
.+|.+|+|++.++++|..+||..|||||.++||.++.++ |+|++||||||||++|++|++++++.....
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~--Dvi~~ApTGSGKTlafllpil~~l~~~~~~--------- 77 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGG--DVAGQAQTGTGKTLAFLVAVMNRLLSRPAL--------- 77 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEEcCCCCcHHHHHHHHHHHHHHhcccc---------
Confidence 469999999999999999999999999999999997655 999999999999999999999998753210
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCC
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 332 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~ 332 (466)
.......+++|||+|||+||.|+++.+..++...++++..++||.....+...+..+++|||+||++|++++.+.
T Consensus 78 ----~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~- 152 (572)
T PRK04537 78 ----ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH- 152 (572)
T ss_pred ----cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc-
Confidence 011223579999999999999999999999999999999999999999888888889999999999999998643
Q ss_pred CccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 333 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 333 ~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
..+.++.+++|||||||+|++++|...+..|+..++.. ..+|+++||||++.
T Consensus 153 -~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~----------------------~~~q~ll~SATl~~ 204 (572)
T PRK04537 153 -KVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER----------------------GTRQTLLFSATLSH 204 (572)
T ss_pred -cccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc----------------------cCceEEEEeCCccH
Confidence 23568899999999999999999999999999988721 26899999999975
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.9e-34 Score=302.83 Aligned_cols=187 Identities=41% Similarity=0.658 Sum_probs=169.4
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
.+|.+|+|++.++++|..+||..|||+|.++||.++.++ |+|++||||||||++|++|+++++...
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~--dvi~~a~TGsGKT~a~~lpil~~l~~~------------ 69 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGK--DVIAQAKTGSGKTAAFGLGLLQKLDVK------------ 69 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC--CEEEECCCCCcHHHHHHHHHHHHhhhc------------
Confidence 679999999999999999999999999999999997654 999999999999999999999988421
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
...+++|||+|||+||.|+++.++.++... ++++..++||.+...+...+..+++|+||||++|.+++.++
T Consensus 70 --------~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~ 141 (460)
T PRK11776 70 --------RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG 141 (460)
T ss_pred --------cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC
Confidence 225689999999999999999999988754 78999999999999998889999999999999999999653
Q ss_pred CCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 332 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 332 ~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
...++++++|||||||+|++++|...+..++..++ ..+|+++||||++..
T Consensus 142 ---~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~------------------------~~~q~ll~SAT~~~~ 191 (460)
T PRK11776 142 ---TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAP------------------------ARRQTLLFSATYPEG 191 (460)
T ss_pred ---CccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCC------------------------cccEEEEEEecCcHH
Confidence 36789999999999999999999999999999998 678999999999754
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.9e-34 Score=309.20 Aligned_cols=189 Identities=39% Similarity=0.682 Sum_probs=170.4
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
..+|.+|+|++.++++|.++||..|||+|.++||.++.++ |+|++||||||||++|++|+++.+...
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~--dvl~~ApTGsGKT~af~lpll~~l~~~----------- 71 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR--DVLGMAQTGSGKTAAFSLPLLHNLDPE----------- 71 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCC--CEEEEcCCCCcHHHHHHHHHHHHhhhc-----------
Confidence 3579999999999999999999999999999999997554 999999999999999999999987421
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhC
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~ 330 (466)
...+++|||+|||+||.|+++.+..+.... ++.++.++||.....+...+..+++|||+||++|+++|..
T Consensus 72 ---------~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r 142 (629)
T PRK11634 72 ---------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR 142 (629)
T ss_pred ---------cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc
Confidence 235789999999999999999999987765 7899999999999999888889999999999999999965
Q ss_pred CCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCH
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 409 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~ 409 (466)
+ .+.|++|.+|||||||.|++++|...+..|+..++ ..+|+++||||++...
T Consensus 143 ~---~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp------------------------~~~q~llfSAT~p~~i 194 (629)
T PRK11634 143 G---TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP------------------------EGHQTALFSATMPEAI 194 (629)
T ss_pred C---CcchhhceEEEeccHHHHhhcccHHHHHHHHHhCC------------------------CCCeEEEEEccCChhH
Confidence 3 46789999999999999999999999999999998 6789999999998653
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.7e-34 Score=298.58 Aligned_cols=198 Identities=37% Similarity=0.607 Sum_probs=174.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 012319 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 253 (466)
Q Consensus 174 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 253 (466)
+|++|+|++.+++.|..+||..|+++|.++||.++.++ |+|++||||||||++|++|++++++...
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~--d~l~~apTGsGKT~~~~lp~l~~l~~~~------------ 67 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGR--DVLGSAPTGTGKTAAFLLPALQHLLDFP------------ 67 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEECCCCChHHHHHHHHHHHHHhhcc------------
Confidence 68999999999999999999999999999999997655 9999999999999999999999996431
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCC
Q 012319 254 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 333 (466)
Q Consensus 254 ~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~ 333 (466)
......+++|||+||++||.|+++.+..++...++.+..++||.....+...+..+++||||||++|++++...
T Consensus 68 ----~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~-- 141 (434)
T PRK11192 68 ----RRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE-- 141 (434)
T ss_pred ----ccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC--
Confidence 11233579999999999999999999999999999999999999998888888889999999999999999654
Q ss_pred ccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC--CHHH
Q 012319 334 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL--SADF 411 (466)
Q Consensus 334 ~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~--~~~~ 411 (466)
.+.+.++.+|||||||+|++++|...+..|...++ ..+|+++||||++. ..++
T Consensus 142 -~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~------------------------~~~q~~~~SAT~~~~~~~~~ 196 (434)
T PRK11192 142 -NFDCRAVETLILDEADRMLDMGFAQDIETIAAETR------------------------WRKQTLLFSATLEGDAVQDF 196 (434)
T ss_pred -CcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCc------------------------cccEEEEEEeecCHHHHHHH
Confidence 36789999999999999999999999999988876 56899999999963 3455
Q ss_pred HHHHh
Q 012319 412 RKKLK 416 (466)
Q Consensus 412 ~~~l~ 416 (466)
..++.
T Consensus 197 ~~~~~ 201 (434)
T PRK11192 197 AERLL 201 (434)
T ss_pred HHHHc
Confidence 55553
No 25
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=282.34 Aligned_cols=188 Identities=40% Similarity=0.673 Sum_probs=173.7
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
..|..++|...+++++...||+.|||||+..||.+|.+. |++..|.||||||.||++|+++++...
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~--dvv~martgsgktaaf~ipm~e~Lk~~------------ 86 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGR--DVVGMARTGSGKTAAFLIPMIEKLKSH------------ 86 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeecc--ccceeeecCCcchhhHHHHHHHHHhhc------------
Confidence 678999999999999999999999999999999997665 999999999999999999999998532
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCC
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 332 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~ 332 (466)
..++.++||+.|||+||.|+.+.++.++++++++..+++||....+++..+..++|||+||||+++.+...-
T Consensus 87 -------s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem- 158 (529)
T KOG0337|consen 87 -------SQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM- 158 (529)
T ss_pred -------cccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe-
Confidence 256889999999999999999999999999999999999999999999999999999999999998776432
Q ss_pred CccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 333 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 333 ~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
...|+++.|||+||||+|++|||.+++..|+..++ ..+||++||||++..
T Consensus 159 --~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~------------------------~~~QTllfSatlp~~ 208 (529)
T KOG0337|consen 159 --TLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP------------------------ESRQTLLFSATLPRD 208 (529)
T ss_pred --eccccceeeeeehhhhHHHhhhhHHHHHHHHHhCC------------------------CcceEEEEeccCchh
Confidence 26799999999999999999999999999999999 678999999999743
No 26
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-35 Score=312.49 Aligned_cols=202 Identities=37% Similarity=0.625 Sum_probs=184.4
Q ss_pred cccccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhh
Q 012319 166 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 245 (466)
Q Consensus 166 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~ 245 (466)
...+.+..+|.+.++...++..++++||..|+|||.+|||+++.++ |||++|.||||||++|+||++.|+..++.
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGr--dvIgvakTgSGKT~af~LPmirhi~dQr~--- 432 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGR--DVIGVAKTGSGKTLAFLLPMIRHIKDQRP--- 432 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCc--ceEEeeccCCccchhhhcchhhhhhcCCC---
Confidence 4567789999999999999999999999999999999999997665 99999999999999999999988865542
Q ss_pred hhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHH
Q 012319 246 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 325 (466)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~ 325 (466)
.....||.+||++|||+||.||++.+..+++.+++++++++||.....+...++.++.|+|||||+++
T Consensus 433 ------------~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmi 500 (997)
T KOG0334|consen 433 ------------LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMI 500 (997)
T ss_pred ------------hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhh
Confidence 22344899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeec
Q 012319 326 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 405 (466)
Q Consensus 326 ~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl 405 (466)
+++.........|.++.+||+||||+|+++||.+++..|++.++ +.+|+++||||+
T Consensus 501 D~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr------------------------pdrQtvlfSatf 556 (997)
T KOG0334|consen 501 DILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR------------------------PDRQTVLFSATF 556 (997)
T ss_pred hhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc------------------------hhhhhhhhhhhh
Confidence 99876665666788888999999999999999999999999997 789999999999
Q ss_pred CCC
Q 012319 406 ALS 408 (466)
Q Consensus 406 ~~~ 408 (466)
+..
T Consensus 557 pr~ 559 (997)
T KOG0334|consen 557 PRS 559 (997)
T ss_pred hHH
Confidence 855
No 27
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-34 Score=264.93 Aligned_cols=188 Identities=30% Similarity=0.542 Sum_probs=172.3
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhh
Q 012319 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 249 (466)
Q Consensus 170 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~ 249 (466)
....+|++++|+.+++++++..||..|+.||+.|||.++.++ |||++|..|+|||.+|.+.+++.+--
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGr--dViaQaqSGTGKTa~~si~vlq~~d~---------- 91 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGR--DVIAQAQSGTGKTATFSISVLQSLDI---------- 91 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhccc--ceEEEecCCCCceEEEEeeeeeeccc----------
Confidence 345789999999999999999999999999999999997666 99999999999999999999887621
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHh
Q 012319 250 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 329 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~ 329 (466)
.....+||||+||||||.|+.+.+..++.+.++++..+.||.+.....+.+..+.+++.||||++++++.
T Consensus 92 ----------~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmik 161 (400)
T KOG0328|consen 92 ----------SVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIK 161 (400)
T ss_pred ----------ccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHH
Confidence 1223589999999999999999999999999999999999999999989999999999999999999996
Q ss_pred CCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 330 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
.+ .+.-+.+++||+||||.||+.||..++..|+.+|| +..|++++|||++
T Consensus 162 r~---~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp------------------------~~~Qvv~~SATlp 211 (400)
T KOG0328|consen 162 RR---SLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP------------------------PGAQVVLVSATLP 211 (400)
T ss_pred hc---cccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC------------------------CCceEEEEeccCc
Confidence 54 36678899999999999999999999999999999 7899999999997
No 28
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-34 Score=278.63 Aligned_cols=197 Identities=34% Similarity=0.533 Sum_probs=173.3
Q ss_pred cccccCcccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhh
Q 012319 168 ISTEFDAWNE-LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK 246 (466)
Q Consensus 168 ~~~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~ 246 (466)
+|.+...|.+ |+-.+.++..+.+.||..|||||.++||.+|.+. |+++.|.||+|||++|++|-+-|+..+..
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~--DliGVAQTgtgKtL~~L~pg~ihi~aqp~---- 287 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGI--DLIGVAQTGTGKTLAFLLPGFIHIDAQPK---- 287 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCc--ceEEEEecCCCcCHHHhccceeeeeccch----
Confidence 5666677764 4567899999999999999999999999996555 99999999999999999999998865432
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHH
Q 012319 247 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 326 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~ 326 (466)
+.....+|++|+++|||+||.|+.-++.++. +-++..++++||.+...+...++.+.+|||+|||+|.+
T Consensus 288 ----------~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlnd 356 (629)
T KOG0336|consen 288 ----------RREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLND 356 (629)
T ss_pred ----------hhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhh
Confidence 2335678999999999999999999888875 44788899999999999999999999999999999999
Q ss_pred HHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 327 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 327 ~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
+... ..++|.+|.||||||||+||||||..+|..|+--+. +.+||++.|||++
T Consensus 357 L~~~---n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR------------------------PDRqtvmTSATWP 409 (629)
T KOG0336|consen 357 LQMD---NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR------------------------PDRQTVMTSATWP 409 (629)
T ss_pred hhhc---CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC------------------------CcceeeeecccCc
Confidence 8843 458899999999999999999999999999997776 7899999999998
Q ss_pred CC
Q 012319 407 LS 408 (466)
Q Consensus 407 ~~ 408 (466)
..
T Consensus 410 ~~ 411 (629)
T KOG0336|consen 410 EG 411 (629)
T ss_pred hH
Confidence 54
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.5e-32 Score=286.67 Aligned_cols=196 Identities=39% Similarity=0.573 Sum_probs=168.3
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
...|.+++|++.++++|.++||..|+++|.++|+.++.++ |+|++||||||||++|++|+++.++.....
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~--dvi~~apTGSGKTlay~lpil~~l~~~~~~-------- 155 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGH--DAIGRAQTGTGKTAAFLISIINQLLQTPPP-------- 155 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEECCCCChHHHHHHHHHHHHHHhcCcc--------
Confidence 4678899999999999999999999999999999996554 999999999999999999999998754210
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh-cCCcEEEeCcHHHHHHHhC
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~-~~~dIiV~TP~~L~~~l~~ 330 (466)
.....+.+++|||+|||+||.|+++.+..++...++.+..++||.....+.+.+. ..++|||+||++|+.++..
T Consensus 156 -----~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~ 230 (475)
T PRK01297 156 -----KERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR 230 (475)
T ss_pred -----cccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc
Confidence 0011235799999999999999999999999888999999999988877766664 4689999999999998854
Q ss_pred CCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
. ...|+.+++|||||||++++++|...+..|+..++.. ..+|+++||||++.
T Consensus 231 ~---~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~----------------------~~~q~i~~SAT~~~ 282 (475)
T PRK01297 231 G---EVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK----------------------EERQTLLFSATFTD 282 (475)
T ss_pred C---CcccccCceEEechHHHHHhcccHHHHHHHHHhCCCC----------------------CCceEEEEEeecCH
Confidence 3 4678999999999999999999999999999888621 35799999999974
No 30
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=4.4e-31 Score=272.60 Aligned_cols=188 Identities=34% Similarity=0.551 Sum_probs=167.4
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
..+|.+|+|++.++++|..+||..|+|+|.++|+.++.+. |++++||||||||++|++|+++.+..
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~--d~ii~apTGsGKT~~~~l~~l~~~~~------------ 92 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGY--DTIGQAQSGTGKTATFVIAALQLIDY------------ 92 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC--CEEEECCCCChHHHHHHHHHHHHhcC------------
Confidence 4789999999999999999999999999999999997655 99999999999999999999987731
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
...++++|||+||++||.|+.+.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++...
T Consensus 93 --------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 164 (401)
T PTZ00424 93 --------DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR 164 (401)
T ss_pred --------CCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC
Confidence 123568999999999999999999999888888888899999887777778888999999999999998653
Q ss_pred CCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 332 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 332 ~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
...++++++|||||||++++.++...+..++..++ ...|+++||||+++.
T Consensus 165 ---~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~~ 214 (401)
T PTZ00424 165 ---HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP------------------------PDVQVALFSATMPNE 214 (401)
T ss_pred ---CcccccccEEEEecHHHHHhcchHHHHHHHHhhCC------------------------CCcEEEEEEecCCHH
Confidence 35689999999999999999999999999998886 678999999999753
No 31
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2e-31 Score=265.15 Aligned_cols=214 Identities=32% Similarity=0.468 Sum_probs=166.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHh--------cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 181 HPLLMKSIYRLGFKEPTPIQKACIPAAAH--------QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 181 ~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~--------~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
...+.+++..+++++.+|+|..++|.+|. +.+ ||+|.||||||||++|.|||++.+...
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~r-DIcV~ApTGSGKTLaY~iPIVQ~L~~R------------ 211 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPR-DICVNAPTGSGKTLAYVIPIVQLLSSR------------ 211 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCC-ceEEecCCCCCceeeehhHHHHHHccC------------
Confidence 34566778999999999999999999864 133 999999999999999999999998532
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcC-----CcEEEeCcHHHHHH
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR-----PELVVGTPGRLWEL 327 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~-----~dIiV~TP~~L~~~ 327 (466)
...+.|||||+|||+|+.||++.|..++.+.++.|+.+.|..+.....+.+.+. .||||+|||||++|
T Consensus 212 -------~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDH 284 (620)
T KOG0350|consen 212 -------PVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDH 284 (620)
T ss_pred -------CccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHh
Confidence 345689999999999999999999999999999999999999988877777652 39999999999999
Q ss_pred HhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCC-----Cccc-cchhh--hhc--ccCCCCce
Q 012319 328 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEG-----QSEQ-TQTCV--TVS--SLQRKKRQ 397 (466)
Q Consensus 328 l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~-----~~~~-~~~~~--~~~--~~~~~~~Q 397 (466)
|.+ ...++|++++||||||||+|++..|..++..++.++.......-. ..+. ...+. ... ....++.+
T Consensus 285 l~~--~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~ 362 (620)
T KOG0350|consen 285 LNN--TKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLW 362 (620)
T ss_pred ccC--CCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhH
Confidence 975 456889999999999999999988888888888777533111100 1110 01111 111 11124567
Q ss_pred EEEEeeecCCCHHHHHHHh
Q 012319 398 TLVFSATIALSADFRKKLK 416 (466)
Q Consensus 398 ~ll~SATl~~~~~~~~~l~ 416 (466)
.++|||||+....-+..|.
T Consensus 363 kL~~satLsqdP~Kl~~l~ 381 (620)
T KOG0350|consen 363 KLVFSATLSQDPSKLKDLT 381 (620)
T ss_pred hhhcchhhhcChHHHhhhh
Confidence 9999999986665555554
No 32
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=8.5e-30 Score=238.41 Aligned_cols=186 Identities=48% Similarity=0.807 Sum_probs=166.1
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 012319 175 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 254 (466)
Q Consensus 175 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 254 (466)
|+++++++.+.+.+.++|+..|+++|.++++.++. ++ ++++++|||+|||++|++|+++++...+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~-~~li~~~TG~GKT~~~~~~~l~~~~~~~------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLS-GR-DVIGQAQTGSGKTAAFLIPILEKLDPSP------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-CC-cEEEECCCCCcHHHHHHHHHHHHHHhhc-------------
Confidence 67899999999999999999999999999999976 44 9999999999999999999999986541
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCc
Q 012319 255 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 334 (466)
Q Consensus 255 ~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~ 334 (466)
...++++||++||++|+.|+...+..+....++.+..++|+.........+..+++|+|+||+.|..++.+..
T Consensus 66 -----~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-- 138 (203)
T cd00268 66 -----KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK-- 138 (203)
T ss_pred -----ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--
Confidence 1246799999999999999999999998878899999999999877777777789999999999999987543
Q ss_pred cccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 335 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 335 ~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
..+..+++|||||||.+.+.++...+..++..++ ..+|+++||||++.
T Consensus 139 -~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~------------------------~~~~~~~~SAT~~~ 186 (203)
T cd00268 139 -LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP------------------------KDRQTLLFSATMPK 186 (203)
T ss_pred -CChhhCCEEEEeChHHhhccChHHHHHHHHHhCC------------------------cccEEEEEeccCCH
Confidence 6678999999999999998999999999999887 57899999999983
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=5.4e-30 Score=281.08 Aligned_cols=194 Identities=22% Similarity=0.266 Sum_probs=158.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcC
Q 012319 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 259 (466)
Q Consensus 180 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
|++.+.++|.+.||..|+++|.++||.++.++ |+++++|||||||+||+||+++.+...
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~--nvvv~apTGSGKTla~~LPiL~~l~~~------------------- 79 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGR--HVVVATGTASGKSLAYQLPVLSALADD------------------- 79 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCC--CEEEECCCCCcHHHHHHHHHHHHHhhC-------------------
Confidence 78999999999999999999999999996554 999999999999999999999998532
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHH-hCCCCccccC
Q 012319 260 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM-SGGEKHLVEL 338 (466)
Q Consensus 260 ~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l-~~~~~~~~~l 338 (466)
.++++|||+|||+||.|+...+..++ ..++++..+.|++.. .+...+..+++|||+||++|...+ .....+...|
T Consensus 80 --~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l 155 (742)
T TIGR03817 80 --PRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFL 155 (742)
T ss_pred --CCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHH
Confidence 25689999999999999999999987 457888888888775 444667778999999999997543 2222233458
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHh
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 416 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~ 416 (466)
+++++|||||||.|.+ .|..++..++..|... .......+|+|+||||++++.++..++.
T Consensus 156 ~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri-----------------~~~~g~~~q~i~~SATi~n~~~~~~~l~ 215 (742)
T TIGR03817 156 RRLRYVVIDECHSYRG-VFGSHVALVLRRLRRL-----------------CARYGASPVFVLASATTADPAAAASRLI 215 (742)
T ss_pred hcCCEEEEeChhhccC-ccHHHHHHHHHHHHHH-----------------HHhcCCCCEEEEEecCCCCHHHHHHHHc
Confidence 9999999999999975 4888888887766421 1111246899999999999988887764
No 34
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2e-30 Score=252.05 Aligned_cols=188 Identities=34% Similarity=0.630 Sum_probs=167.4
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
-+.+|.+++|++.|++.++..||..|+.||+.||++++.+. |+++++++|+|||.+|++++++++-..
T Consensus 24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~--dv~~qaqsgTgKt~af~i~iLq~iD~~---------- 91 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGH--DVIAQAQSGTGKTAAFLISILQQIDMS---------- 91 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCC--ceeEeeeccccchhhhHHHHHhhcCcc----------
Confidence 45799999999999999999999999999999999986665 999999999999999999999997221
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH-hcCCcEEEeCcHHHHHHHh
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL-KARPELVVGTPGRLWELMS 329 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l-~~~~dIiV~TP~~L~~~l~ 329 (466)
.....||+++|||+||.|+......++...++++..+.||.+...+...+ ...++|+|+|||++.+++.
T Consensus 92 ----------~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~ 161 (397)
T KOG0327|consen 92 ----------VKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLN 161 (397)
T ss_pred ----------hHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhc
Confidence 12347999999999999999999999999999999999999887554444 4569999999999999996
Q ss_pred CCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 330 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
.+ .+....++++|+||||.|+..||.+.|..|+.++| ...|+++||||++.
T Consensus 162 ~~---~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp------------------------~~vQv~l~SAT~p~ 212 (397)
T KOG0327|consen 162 RG---SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELP------------------------SDVQVVLLSATMPS 212 (397)
T ss_pred cc---cccccceeEEeecchHhhhccchHHHHHHHHHHcC------------------------cchhheeecccCcH
Confidence 54 46678899999999999999999999999999999 67899999999973
No 35
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.1e-29 Score=230.96 Aligned_cols=186 Identities=36% Similarity=0.641 Sum_probs=167.4
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
..|.++-|++.+++++...||.+|+++|.+|||.++.+- ||+++|.+|-|||.+|+|..|+.+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgm--dvlcqaksgmgktavfvl~tlqqi--------------- 104 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM--DVLCQAKSGMGKTAVFVLATLQQI--------------- 104 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcc--hhheecccCCCceeeeehhhhhhc---------------
Confidence 567888899999999999999999999999999998876 999999999999999999999887
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
.+..+..-+|++|.||+||.||.++...++++. ++++.+++||.+.......+++.|+|+||||||++.++.+.
T Consensus 105 -----epv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k 179 (387)
T KOG0329|consen 105 -----EPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR 179 (387)
T ss_pred -----CCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc
Confidence 233456789999999999999999999888876 68999999999999999999999999999999999999654
Q ss_pred CCccccCCcccEEEecccchhhc-cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 332 EKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 332 ~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
.+.|++++++|+||||.|++ ..++..++.|+...| ...|+++||||++.
T Consensus 180 ---~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp------------------------~~KQvmmfsatlsk 229 (387)
T KOG0329|consen 180 ---SLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLSK 229 (387)
T ss_pred ---cCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCc------------------------ccceeeeeeeecch
Confidence 58899999999999999885 357889999998887 67899999999974
No 36
>PRK02362 ski2-like helicase; Provisional
Probab=99.96 E-value=7.7e-29 Score=273.81 Aligned_cols=192 Identities=24% Similarity=0.297 Sum_probs=164.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 012319 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 253 (466)
Q Consensus 174 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 253 (466)
.|.+|+|++.+++.+...||..|+|+|.+||+..+..++ |++++||||||||++|.+|+++++..
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~-nvlv~APTGSGKTlia~lail~~l~~-------------- 66 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGK-NLLAAIPTASGKTLIAELAMLKAIAR-------------- 66 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCC-cEEEECCCcchHHHHHHHHHHHHHhc--------------
Confidence 478899999999999999999999999999998666666 99999999999999999999998841
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCC
Q 012319 254 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 333 (466)
Q Consensus 254 ~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~ 333 (466)
+.++|||+|||+||.|++..|..+.. .+++++.++|+...... ....++|+||||+++..++.++
T Consensus 67 ---------~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~-- 131 (737)
T PRK02362 67 ---------GGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG-- 131 (737)
T ss_pred ---------CCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC--
Confidence 34799999999999999999997653 58899999998764332 2356899999999998888653
Q ss_pred ccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHH
Q 012319 334 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 413 (466)
Q Consensus 334 ~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~ 413 (466)
...++.+++|||||||.|.+.+++..++.++..+...+ ...|+|+||||+++..++..
T Consensus 132 -~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~---------------------~~~qii~lSATl~n~~~la~ 189 (737)
T PRK02362 132 -APWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN---------------------PDLQVVALSATIGNADELAD 189 (737)
T ss_pred -hhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC---------------------CCCcEEEEcccCCCHHHHHH
Confidence 24578999999999999998889999988887765221 45799999999999999999
Q ss_pred HHhh
Q 012319 414 KLKH 417 (466)
Q Consensus 414 ~l~~ 417 (466)
|+..
T Consensus 190 wl~~ 193 (737)
T PRK02362 190 WLDA 193 (737)
T ss_pred HhCC
Confidence 9974
No 37
>PRK00254 ski2-like helicase; Provisional
Probab=99.96 E-value=1.4e-28 Score=271.18 Aligned_cols=190 Identities=22% Similarity=0.315 Sum_probs=165.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 012319 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 253 (466)
Q Consensus 174 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 253 (466)
.|.+|++++.+.+.+.+.||..|+|+|.++|+..+..++ |++++||||||||++|.+|++++++..
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~-nvlv~apTGsGKT~~~~l~il~~l~~~------------- 67 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGK-NLVLAIPTASGKTLVAEIVMVNKLLRE------------- 67 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCC-cEEEECCCCcHHHHHHHHHHHHHHHhc-------------
Confidence 467889999999999999999999999999997556666 999999999999999999999988531
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCC
Q 012319 254 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 333 (466)
Q Consensus 254 ~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~ 333 (466)
+.++|||+||++||.|++..+..+. ..++++..++|+...... +...++|+|+||+++..++.+.
T Consensus 68 ---------~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~-- 132 (720)
T PRK00254 68 ---------GGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHG-- 132 (720)
T ss_pred ---------CCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCC--
Confidence 3589999999999999999998764 468899999998765432 3357899999999998888543
Q ss_pred ccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHH
Q 012319 334 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 413 (466)
Q Consensus 334 ~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~ 413 (466)
...++++++|||||+|.+.+.++...+..++..+. ..+|+|+||||++++.++..
T Consensus 133 -~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~------------------------~~~qiI~lSATl~n~~~la~ 187 (720)
T PRK00254 133 -SSWIKDVKLVVADEIHLIGSYDRGATLEMILTHML------------------------GRAQILGLSATVGNAEELAE 187 (720)
T ss_pred -chhhhcCCEEEEcCcCccCCccchHHHHHHHHhcC------------------------cCCcEEEEEccCCCHHHHHH
Confidence 24578999999999999998899999999998886 56899999999999999999
Q ss_pred HHhh
Q 012319 414 KLKH 417 (466)
Q Consensus 414 ~l~~ 417 (466)
||..
T Consensus 188 wl~~ 191 (720)
T PRK00254 188 WLNA 191 (720)
T ss_pred HhCC
Confidence 9875
No 38
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.96 E-value=3.2e-29 Score=255.28 Aligned_cols=187 Identities=33% Similarity=0.552 Sum_probs=165.9
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhh
Q 012319 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 249 (466)
Q Consensus 170 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~ 249 (466)
.....|++|.|...++..|.+.+|..||+||..|||.++.+- |+||+|..|+|||++|.+.+++.+.
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~km--DliVQaKSGTGKTlVfsv~av~sl~----------- 88 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKM--DLIVQAKSGTGKTLVFSVLAVESLD----------- 88 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhccc--ceEEEecCCCCceEEEEeeeehhcC-----------
Confidence 344778999999999999999999999999999999997644 9999999999999999999988872
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC-CCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHH
Q 012319 250 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG-INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 328 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~-~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l 328 (466)
.....++++||+||||+|.||.+.+..++.. .++++.+++||+........+ +.++|+|||||||..++
T Consensus 89 ---------~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~ 158 (980)
T KOG4284|consen 89 ---------SRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLV 158 (980)
T ss_pred ---------cccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHH
Confidence 3456789999999999999999999999874 489999999999886654444 45889999999999999
Q ss_pred hCCCCccccCCcccEEEecccchhhc-cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 329 SGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 329 ~~~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
..+ .++.++|+++||||||.|++ ..|...|..|++.|| ..+|+++||||.+
T Consensus 159 el~---~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP------------------------~~rQv~a~SATYp 210 (980)
T KOG4284|consen 159 ELG---AMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLP------------------------QIRQVAAFSATYP 210 (980)
T ss_pred Hhc---CCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcc------------------------hhheeeEEeccCc
Confidence 654 58899999999999999998 568899999999999 7899999999996
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.95 E-value=7.3e-27 Score=261.10 Aligned_cols=200 Identities=27% Similarity=0.354 Sum_probs=156.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcC
Q 012319 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 259 (466)
Q Consensus 180 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
|++.+.+.+ ..+|..|||+|.++||.++.+ + |++++||||||||++|++|++++++..... ..
T Consensus 18 l~~~v~~~~-~~~~~~~tpiQ~~Ai~~il~g-~-nvli~APTGSGKTlaa~Lpil~~l~~~~~~--------------~~ 80 (876)
T PRK13767 18 LRPYVREWF-KEKFGTFTPPQRYAIPLIHEG-K-NVLISSPTGSGKTLAAFLAIIDELFRLGRE--------------GE 80 (876)
T ss_pred cCHHHHHHH-HHccCCCCHHHHHHHHHHHcC-C-CEEEECCCCCcHHHHHHHHHHHHHHhhccc--------------cC
Confidence 456665554 458999999999999998554 4 999999999999999999999998753210 01
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHH-------HH----cCC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHH
Q 012319 260 PKGHLRALIITPTRELALQVTDHLKE-------VA----KGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 327 (466)
Q Consensus 260 ~~~~~~vLil~PtreLa~Qv~~~l~~-------l~----~~~-~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~ 327 (466)
...++++|||+|||+||.|++..+.. ++ ... ++++..++|+++.....+.+...++|+|+||++|..+
T Consensus 81 ~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 81 LEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAIL 160 (876)
T ss_pred CCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHH
Confidence 13467999999999999999886653 22 122 6788999999998888778888999999999999888
Q ss_pred HhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 328 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 328 l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
+.+. .....|+++++|||||||.|++..+..++..++..|.... ....|+|+||||+++
T Consensus 161 l~~~-~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~--------------------~~~~q~IglSATl~~ 219 (876)
T PRK13767 161 LNSP-KFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA--------------------GGEFVRIGLSATIEP 219 (876)
T ss_pred hcCh-hHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc--------------------CCCCeEEEEecccCC
Confidence 7542 1123589999999999999998888888777776654211 146799999999998
Q ss_pred CHHHHHHHhh
Q 012319 408 SADFRKKLKH 417 (466)
Q Consensus 408 ~~~~~~~l~~ 417 (466)
..++..||..
T Consensus 220 ~~~va~~L~~ 229 (876)
T PRK13767 220 LEEVAKFLVG 229 (876)
T ss_pred HHHHHHHhcC
Confidence 8888888854
No 40
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=7.4e-28 Score=232.42 Aligned_cols=196 Identities=32% Similarity=0.530 Sum_probs=165.2
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
...+|.+|+|++.++++++.++|..|+.||..++|.+|.....++|+++..|+|||.||+|.+|.++
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrv------------- 154 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRV------------- 154 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhc-------------
Confidence 3588999999999999999999999999999999999987767999999999999999999999987
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhC
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~ 330 (466)
+.....|+++.|+|||+||.|+.+.+.+.++.+++.+....-|....+- -.-..+|+|+|||-+.+++..
T Consensus 155 -------d~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~k 224 (477)
T KOG0332|consen 155 -------DPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLK 224 (477)
T ss_pred -------CccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHH
Confidence 3345578999999999999999999999999888887776655422111 111257999999999999853
Q ss_pred CCCccccCCcccEEEecccchhhc-cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCH
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 409 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~ 409 (466)
.+.+.+..++++|+||||.|++ .||.++-..|+..+| ...|+|+||||+....
T Consensus 225 --lk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP------------------------~~~QllLFSATf~e~V 278 (477)
T KOG0332|consen 225 --LKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP------------------------RNQQLLLFSATFVEKV 278 (477)
T ss_pred --HHhhChhhceEEEecchhhhhhcccccccchhhhhhcC------------------------CcceEEeeechhHHHH
Confidence 2457789999999999999986 579999999999998 6789999999997543
Q ss_pred -HHHHHH
Q 012319 410 -DFRKKL 415 (466)
Q Consensus 410 -~~~~~l 415 (466)
.|+.++
T Consensus 279 ~~Fa~ki 285 (477)
T KOG0332|consen 279 AAFALKI 285 (477)
T ss_pred HHHHHHh
Confidence 555554
No 41
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=5.4e-28 Score=242.04 Aligned_cols=210 Identities=20% Similarity=0.257 Sum_probs=168.9
Q ss_pred CCCcHHHHHHHHHHHhcCCccEEEecCC-CCch--hHHHHHHHHHHHHHHHHHhhhhhhh--------hhhhhhhcCCCC
Q 012319 194 KEPTPIQKACIPAAAHQGKVDIIGAAET-GSGK--TLAFGLPIMQRLLEEREKAGKMLEE--------KGEEAEKYAPKG 262 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~~~~~dvl~~a~T-GSGK--Tl~~~lpil~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~ 262 (466)
..+|+.|.+.+..+.+++ |+++.-.| +.|+ +-.|||++|+|+++.++...+++.+ +.+...++++.+
T Consensus 215 ~pltalQ~~L~~~m~~Yr--Dl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYR--DLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred CcchHHHHHHHHHHHhhh--hhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 468999999999997776 98876544 3454 6789999999999999998887765 445778999999
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCc---------EEEEEECCCC---------HHHHHHHHh-------------
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINV---------RVVPIVGGMS---------TEKQERLLK------------- 311 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~---------~v~~~~gg~~---------~~~~~~~l~------------- 311 (466)
+|+||||||+|+-|..|++.|..+..+..- ++..-++|.. .......+.
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 999999999999999999999998554321 1111222210 111111111
Q ss_pred -----------cCCcEEEeCcHHHHHHHhCCC---CccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCC
Q 012319 312 -----------ARPELVVGTPGRLWELMSGGE---KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEG 377 (466)
Q Consensus 312 -----------~~~dIiV~TP~~L~~~l~~~~---~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~ 377 (466)
..+|||||+|.+|.++|.+.. .....|++|.++|||.||.|+ +++|.+|..|+++|+.+|...|+
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccC
Confidence 248999999999999998532 233458999999999999998 99999999999999999999999
Q ss_pred CccccchhhhhcccCCCCceEEEEeeecC
Q 012319 378 QSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
+||+|+|+||++.+++..+|||+||+...
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~ 480 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSH 480 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999875
No 42
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=3.5e-26 Score=207.10 Aligned_cols=162 Identities=40% Similarity=0.585 Sum_probs=137.4
Q ss_pred cHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHH
Q 012319 197 TPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 276 (466)
Q Consensus 197 t~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa 276 (466)
||+|.++++.++ +++ +++++||||+|||++|++|+++.+... ...++||++|+++|+
T Consensus 1 t~~Q~~~~~~i~-~~~-~~li~aptGsGKT~~~~~~~l~~~~~~---------------------~~~~~lii~P~~~l~ 57 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGK-NVLISAPTGSGKTLAYILPALNRLQEG---------------------KDARVLIIVPTRALA 57 (169)
T ss_dssp -HHHHHHHHHHH-TTS-EEEEECSTTSSHHHHHHHHHHHHHHTT---------------------SSSEEEEEESSHHHH
T ss_pred CHHHHHHHHHHH-cCC-CEEEECCCCCccHHHHHHHHHhhhccC---------------------CCceEEEEeeccccc
Confidence 799999999997 444 999999999999999999999988532 223899999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEEECCCCHH-HHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhcc
Q 012319 277 LQVTDHLKEVAKGINVRVVPIVGGMSTE-KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 355 (466)
Q Consensus 277 ~Qv~~~l~~l~~~~~~~v~~~~gg~~~~-~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~ 355 (466)
.|+++.+..++...++++..++|+.... .....+..+++|+|+||++|.+++.... ..+.++++|||||+|.+...
T Consensus 58 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~~~~~~iViDE~h~l~~~ 134 (169)
T PF00270_consen 58 EQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK---INISRLSLIVIDEAHHLSDE 134 (169)
T ss_dssp HHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS---STGTTESEEEEETHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCcchhhccccccc---cccccceeeccCcccccccc
Confidence 9999999999988788999999999865 4445556689999999999999997632 35667999999999999987
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 356 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 356 g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
++...+..|+..+... .+.|++++|||++
T Consensus 135 ~~~~~~~~i~~~~~~~----------------------~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 135 TFRAMLKSILRRLKRF----------------------KNIQIILLSATLP 163 (169)
T ss_dssp THHHHHHHHHHHSHTT----------------------TTSEEEEEESSST
T ss_pred cHHHHHHHHHHHhcCC----------------------CCCcEEEEeeCCC
Confidence 8888999999887522 3589999999996
No 43
>PRK01172 ski2-like helicase; Provisional
Probab=99.94 E-value=2e-26 Score=252.69 Aligned_cols=191 Identities=19% Similarity=0.276 Sum_probs=158.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 012319 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 253 (466)
Q Consensus 174 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 253 (466)
.|++|+|++.+++.+...+|. |+++|.++++.++ .++ +++++||||||||++|.+++++.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~-~~~-nvlv~apTGSGKTl~a~lail~~l~~-------------- 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLR-KGE-NVIVSVPTAAGKTLIAYSAIYETFLA-------------- 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHh-cCC-cEEEECCCCchHHHHHHHHHHHHHHh--------------
Confidence 467889999999999999986 9999999999984 455 99999999999999999999988742
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCC
Q 012319 254 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 333 (466)
Q Consensus 254 ~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~ 333 (466)
+.++|||+|+|+||.|+++.+..+. ..++++...+|+...... ....++|+|+||+++..++.+.
T Consensus 65 ---------~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~-- 129 (674)
T PRK01172 65 ---------GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD-- 129 (674)
T ss_pred ---------CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC--
Confidence 2479999999999999999998864 468888888888754322 2356899999999998888543
Q ss_pred ccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHH
Q 012319 334 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 413 (466)
Q Consensus 334 ~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~ 413 (466)
...+.++++|||||||.+.+.++...++.++..+...+ ...|+|+||||+++..++.+
T Consensus 130 -~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~---------------------~~~riI~lSATl~n~~~la~ 187 (674)
T PRK01172 130 -PYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN---------------------PDARILALSATVSNANELAQ 187 (674)
T ss_pred -hhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC---------------------cCCcEEEEeCccCCHHHHHH
Confidence 34588999999999999998888888888876654211 46899999999999999999
Q ss_pred HHhhc
Q 012319 414 KLKHG 418 (466)
Q Consensus 414 ~l~~~ 418 (466)
|+...
T Consensus 188 wl~~~ 192 (674)
T PRK01172 188 WLNAS 192 (674)
T ss_pred HhCCC
Confidence 98653
No 44
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.8e-26 Score=234.86 Aligned_cols=207 Identities=32% Similarity=0.498 Sum_probs=166.2
Q ss_pred ccccccCcccc----CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHH
Q 012319 167 EISTEFDAWNE----LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEERE 242 (466)
Q Consensus 167 ~~~~~~~~f~~----l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~ 242 (466)
.++.++.+|.+ +...+.+++.+...+|..|+|+|++|||.++.+. |+++|||||||||++|++|++++|....
T Consensus 126 ~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r--~~lAcapTGsgKtlaf~~Pil~~L~~~~- 202 (593)
T KOG0344|consen 126 HLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKR--DVLACAPTGSGKTLAFNLPILQHLKDLS- 202 (593)
T ss_pred CCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhccc--ceEEeccCCCcchhhhhhHHHHHHHHhh-
Confidence 34556677775 5688999999999999999999999999997766 9999999999999999999999996542
Q ss_pred HhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHH--cCCCcEEEEEECCCCH-HHHHHHHhcCCcEEEe
Q 012319 243 KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA--KGINVRVVPIVGGMST-EKQERLLKARPELVVG 319 (466)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~--~~~~~~v~~~~gg~~~-~~~~~~l~~~~dIiV~ 319 (466)
...+..+.+++||.|||+||.|++.++.++. .+.++++..+...... ..+.......++|+|+
T Consensus 203 --------------~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~ 268 (593)
T KOG0344|consen 203 --------------QEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIS 268 (593)
T ss_pred --------------cccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhc
Confidence 1234678999999999999999999999998 6667766655444322 2222333456899999
Q ss_pred CcHHHHHHHhCCCCccccCCcccEEEecccchhhcc-CCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceE
Q 012319 320 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 398 (466)
Q Consensus 320 TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~-g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ 398 (466)
||-+|..++..+ ...++++.|.++|+||||++++. .|..++..|+..+.. +...+
T Consensus 269 TP~ri~~~~~~~-~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-----------------------~~i~~ 324 (593)
T KOG0344|consen 269 TPMRIVGLLGLG-KLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-----------------------PDIRV 324 (593)
T ss_pred CHHHHHHHhcCC-CccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC-----------------------cchhh
Confidence 999999999764 22367999999999999999998 899999999988863 45677
Q ss_pred EEEeeecCCCHHHHHHHh
Q 012319 399 LVFSATIALSADFRKKLK 416 (466)
Q Consensus 399 ll~SATl~~~~~~~~~l~ 416 (466)
-+||||++. ..-.|..
T Consensus 325 a~FSat~~~--~VEE~~~ 340 (593)
T KOG0344|consen 325 ALFSATISV--YVEEWAE 340 (593)
T ss_pred hhhhccccH--HHHHHHH
Confidence 799999964 3344543
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.93 E-value=1.3e-25 Score=242.23 Aligned_cols=199 Identities=26% Similarity=0.339 Sum_probs=171.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcC
Q 012319 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 259 (466)
Q Consensus 180 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
|++.+.+.+... |..|||.|.++||.+. .|+ |+|++||||||||+|+.||+++.+++.. ...
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~-~G~-nvLiiAPTGsGKTeAAfLpil~~l~~~~---------------~~~ 69 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIH-SGE-NVLIIAPTGSGKTEAAFLPVINELLSLG---------------KGK 69 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHh-CCC-ceEEEcCCCCChHHHHHHHHHHHHHhcc---------------CCC
Confidence 688888888887 9999999999999995 555 9999999999999999999999998652 122
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 260 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 260 ~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
...+..||||+|.|+|...+...|...+..+|+.+.+.+|+++..+..+..++.|||+|+||+.|.-+|.+. .....|+
T Consensus 70 ~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~ 148 (814)
T COG1201 70 LEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLR 148 (814)
T ss_pred CCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhc
Confidence 345789999999999999999999999999999999999999999988889999999999999998888653 2234589
Q ss_pred cccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhhc
Q 012319 340 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 418 (466)
Q Consensus 340 ~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~~ 418 (466)
+++++||||.|.+.+.-.+.++.--+..|... + ...|.|++|||++++.+.++||...
T Consensus 149 ~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l--------------------~-~~~qRIGLSATV~~~~~varfL~g~ 206 (814)
T COG1201 149 DVRYVIVDEIHALAESKRGVQLALSLERLREL--------------------A-GDFQRIGLSATVGPPEEVAKFLVGF 206 (814)
T ss_pred CCcEEEeehhhhhhccccchhhhhhHHHHHhh--------------------C-cccEEEeehhccCCHHHHHHHhcCC
Confidence 99999999999998777777777777666522 1 2679999999999999999999754
No 46
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.92 E-value=1.6e-24 Score=234.99 Aligned_cols=169 Identities=20% Similarity=0.210 Sum_probs=131.7
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEE-E
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI-I 269 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi-l 269 (466)
.||. |||||.++||.++.++. ++++++|||||||.+|.++++... .....+++|| +
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~-~v~~~apTGSGKTaa~aafll~~~---------------------~~~~~~~rLv~~ 68 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQP-PESCSTPTGLGKTSIIAAWLLAVE---------------------IGAKVPRRLVYV 68 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCC-cceEecCCCCcccHHHHHhhcccc---------------------ccccccceEEEe
Confidence 6887 99999999999987665 788899999999998766655321 1123455665 6
Q ss_pred eCcHHHHHHHHHHHHHHHcCC-----------------------CcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHH
Q 012319 270 TPTRELALQVTDHLKEVAKGI-----------------------NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 326 (466)
Q Consensus 270 ~PtreLa~Qv~~~l~~l~~~~-----------------------~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~ 326 (466)
+|||+||.|+++.+..+++.+ ++++..++||.+...+...+..+++|||||+ +
T Consensus 69 vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D 144 (844)
T TIGR02621 69 VNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----D 144 (844)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----H
Confidence 699999999999999998754 4889999999999999999999999999995 4
Q ss_pred HHhCCCC-------------ccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCC
Q 012319 327 LMSGGEK-------------HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR 393 (466)
Q Consensus 327 ~l~~~~~-------------~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (466)
++.++.. +.-.|+.+++||||||| ++++|...+..|+..+...+ . .
T Consensus 145 ~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~-~------------------~ 203 (844)
T TIGR02621 145 MIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPP-D------------------F 203 (844)
T ss_pred HHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCc-c------------------c
Confidence 4433211 01137889999999999 57999999999998752110 0 0
Q ss_pred CCceEEEEeeecCC
Q 012319 394 KKRQTLVFSATIAL 407 (466)
Q Consensus 394 ~~~Q~ll~SATl~~ 407 (466)
.++|+++||||++.
T Consensus 204 rprQtLLFSAT~p~ 217 (844)
T TIGR02621 204 LPLRVVELTATSRT 217 (844)
T ss_pred ccceEEEEecCCCc
Confidence 24799999999974
No 47
>PRK09401 reverse gyrase; Reviewed
Probab=99.91 E-value=1e-23 Score=239.39 Aligned_cols=184 Identities=22% Similarity=0.250 Sum_probs=135.0
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
.|+ .||++|..++|.++.++ |++++||||||||+ |+++++..+.. .++++|||+
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~--dv~i~ApTGsGKT~-f~l~~~~~l~~----------------------~g~~alIL~ 130 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGE--SFAIIAPTGVGKTT-FGLVMSLYLAK----------------------KGKKSYIIF 130 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCC--cEEEEcCCCCCHHH-HHHHHHHHHHh----------------------cCCeEEEEe
Confidence 577 89999999999997665 99999999999995 66666554421 256899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCH-----HHHHHHHh-cCCcEEEeCcHHHHHHHhCCCCccccCCcccEE
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMST-----EKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 344 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~-----~~~~~~l~-~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~l 344 (466)
|||+||.|+++.+..++...++.+..++|+.+. ..+...+. ..++|+|+||++|.+++. .+.+..+++|
T Consensus 131 PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-----~l~~~~~~~l 205 (1176)
T PRK09401 131 PTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-----ELPKKKFDFV 205 (1176)
T ss_pred ccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-----hccccccCEE
Confidence 999999999999999998888888888876542 22333344 469999999999999884 1446679999
Q ss_pred Eecccchhhc-----------cCCH-HHHHHHHHhCCCCCCCCCCCccccchhhh--hcccCCCCceEEEEeeecCC
Q 012319 345 VLDEADRMIE-----------NGHF-RELQSIIDMLPMTNGSNEGQSEQTQTCVT--VSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 345 ViDEad~ll~-----------~g~~-~~l~~Il~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Q~ll~SATl~~ 407 (466)
||||||+|++ +||. ..|..++..++..... ..+..+.+.+. +.......+|+++||||++.
T Consensus 206 VvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~--~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~ 280 (1176)
T PRK09401 206 FVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY--EEIYEKIRELEEKIAELKDKKGVLVVSSATGRP 280 (1176)
T ss_pred EEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc--chhhhHHHHHHHhhhhcccCCceEEEEeCCCCc
Confidence 9999999996 6784 7899999888741110 00000111110 11111237899999999974
No 48
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.90 E-value=2.9e-23 Score=229.27 Aligned_cols=200 Identities=24% Similarity=0.352 Sum_probs=164.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcC
Q 012319 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 259 (466)
Q Consensus 180 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
....+..++...|+..|+.+|.+|+..+ ..|+ ||||+++||||||.+|++||++++++..
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~-~~G~-~vvVtTgTgSGKTe~FllPIld~~l~~~------------------ 114 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLI-REGR-NVVVTTGTGSGKTESFLLPILDHLLRDP------------------ 114 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHH-HCCC-CEEEECCCCCchhHHHHHHHHHHHhhCc------------------
Confidence 3455677888889999999999999998 4555 9999999999999999999999998642
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCC--cEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHH-HhCCCCccc
Q 012319 260 PKGHLRALIITPTRELALQVTDHLKEVAKGIN--VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL-MSGGEKHLV 336 (466)
Q Consensus 260 ~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~--~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~-l~~~~~~~~ 336 (466)
.-++|||.||++||+.+.+.|.++....+ +.+..+.|.+...+....+.+.++||++||.+|..+ |.+...+..
T Consensus 115 ---~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~ 191 (851)
T COG1205 115 ---SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLW 191 (851)
T ss_pred ---CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHH
Confidence 12799999999999999999999988777 788888899998888788889999999999999884 444455666
Q ss_pred cCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHh
Q 012319 337 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 416 (466)
Q Consensus 337 ~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~ 416 (466)
.++.+++|||||+|..- ..|+.+|-.++..|... + ......+|+|..|||++++.+|...+.
T Consensus 192 ~~~~Lk~lVvDElHtYr-Gv~GS~vA~llRRL~~~-------------~----~~~~~~~q~i~~SAT~~np~e~~~~l~ 253 (851)
T COG1205 192 LLRNLKYLVVDELHTYR-GVQGSEVALLLRRLLRR-------------L----RRYGSPLQIICTSATLANPGEFAEELF 253 (851)
T ss_pred HHhcCcEEEEecceecc-ccchhHHHHHHHHHHHH-------------H----hccCCCceEEEEeccccChHHHHHHhc
Confidence 68999999999999873 55777777777665411 0 011146899999999999999999876
Q ss_pred hccc
Q 012319 417 HGSL 420 (466)
Q Consensus 417 ~~~~ 420 (466)
...+
T Consensus 254 ~~~f 257 (851)
T COG1205 254 GRDF 257 (851)
T ss_pred CCcc
Confidence 5433
No 49
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=6.3e-23 Score=225.98 Aligned_cols=185 Identities=24% Similarity=0.306 Sum_probs=134.4
Q ss_pred cccc--CCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 174 AWNE--LRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 174 ~f~~--l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
.|.. +.....+...+.. +||..++|+|.++|+.++.++ |+|+++|||+|||+||+||++..
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~Gr--DVLVimPTGSGKSLcYQLPAL~~-------------- 499 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGY--DVFVLMPTGGGKSLTYQLPALIC-------------- 499 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCC--CEEEEcCCCccHHHHHHHHHHHc--------------
Confidence 4653 3444555555554 899999999999999997655 99999999999999999999853
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh------cCCcEEEeCcHHH
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK------ARPELVVGTPGRL 324 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~------~~~dIiV~TP~~L 324 (466)
+..+|||+|+++|+.+++..+.. .++.+..+.|+.....+...+. ..++|||+||++|
T Consensus 500 ------------~GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL 563 (1195)
T PLN03137 500 ------------PGITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKV 563 (1195)
T ss_pred ------------CCcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHh
Confidence 12699999999999866666654 3788999999998877665544 4689999999998
Q ss_pred HH---HHhCCCCccccCCcccEEEecccchhhccC--CHHHHHH---HHHhCCCCCCCCCCCccccchhhhhcccCCCCc
Q 012319 325 WE---LMSGGEKHLVELHTLSFFVLDEADRMIENG--HFRELQS---IIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKR 396 (466)
Q Consensus 325 ~~---~l~~~~~~~~~l~~l~~lViDEad~ll~~g--~~~~l~~---Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (466)
.. ++.. .........|.+|||||||+|++|| |...+.. +...+ +.+
T Consensus 564 ~~~d~ll~~-L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~f-------------------------p~v 617 (1195)
T PLN03137 564 AKSDSLLRH-LENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKF-------------------------PNI 617 (1195)
T ss_pred hcchHHHHH-HHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhC-------------------------CCC
Confidence 52 2211 0011123458899999999999998 4444443 33333 357
Q ss_pred eEEEEeeecCCC--HHHHHHHh
Q 012319 397 QTLVFSATIALS--ADFRKKLK 416 (466)
Q Consensus 397 Q~ll~SATl~~~--~~~~~~l~ 416 (466)
|+++||||++.. .++...|.
T Consensus 618 PilALTATAT~~V~eDI~~~L~ 639 (1195)
T PLN03137 618 PVLALTATATASVKEDVVQALG 639 (1195)
T ss_pred CeEEEEecCCHHHHHHHHHHcC
Confidence 899999999743 24455543
No 50
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.89 E-value=1.3e-22 Score=230.78 Aligned_cols=156 Identities=21% Similarity=0.267 Sum_probs=120.0
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCC
Q 012319 183 LLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 262 (466)
Q Consensus 183 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (466)
.+.+.+.......|+++|+.++|.++.+. |++++||||||||+ |++|++..+.. .
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~--d~vi~ApTGsGKT~-f~l~~~~~l~~----------------------~ 120 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGD--SFAIIAPTGVGKTT-FGLAMSLFLAK----------------------K 120 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCC--eEEEECCCCCCHHH-HHHHHHHHHHh----------------------c
Confidence 34444555444489999999999997665 99999999999996 77777766531 1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEE---EEEECCCCHHHHHH---HHh-cCCcEEEeCcHHHHHHHhCCCCcc
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRV---VPIVGGMSTEKQER---LLK-ARPELVVGTPGRLWELMSGGEKHL 335 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v---~~~~gg~~~~~~~~---~l~-~~~dIiV~TP~~L~~~l~~~~~~~ 335 (466)
++++|||+|||+||.|+++.+..++...++.+ +.++||.+...+.. .+. ++++|||+||++|.+++..
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~----- 195 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE----- 195 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH-----
Confidence 46899999999999999999999998776654 35679988765432 233 3599999999999988743
Q ss_pred ccCCcccEEEecccchhhc-----------cCCHHH-HHHHHHhCC
Q 012319 336 VELHTLSFFVLDEADRMIE-----------NGHFRE-LQSIIDMLP 369 (466)
Q Consensus 336 ~~l~~l~~lViDEad~ll~-----------~g~~~~-l~~Il~~l~ 369 (466)
... .+++|||||||+|++ +||..+ +..|++.++
T Consensus 196 l~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~ 240 (1171)
T TIGR01054 196 LGP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIR 240 (1171)
T ss_pred hcC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhh
Confidence 111 899999999999998 678764 677665543
No 51
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.89 E-value=4.5e-23 Score=224.96 Aligned_cols=189 Identities=22% Similarity=0.265 Sum_probs=157.7
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 012319 179 RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 258 (466)
Q Consensus 179 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 258 (466)
.+...+..-+...++..+.+-|+.++...+..+. |+|+|+|||||||+++.+.+++.+.+.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~-N~li~aPTgsGKTlIA~lai~~~l~~~------------------ 75 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDE-NVLISAPTGSGKTLIALLAILSTLLEG------------------ 75 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCC-cEEEEcCCCCchHHHHHHHHHHHHHhc------------------
Confidence 3677777777788888888888888877766655 999999999999999999999998652
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 259 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 259 ~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++|||||+|+||.++++.|.. ...+|++|...+|+...... ...+++|||+||+++-.++.+.. ..+
T Consensus 76 ----~~k~vYivPlkALa~Ek~~~~~~-~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~---~~~ 144 (766)
T COG1204 76 ----GGKVVYIVPLKALAEEKYEEFSR-LEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRP---SWI 144 (766)
T ss_pred ----CCcEEEEeChHHHHHHHHHHhhh-HHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCc---chh
Confidence 34799999999999999999994 45579999999999875442 33578999999999987775543 357
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhhc
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 418 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~~ 418 (466)
..+++|||||+|.+.+......++.|+..++..+ ...|++++|||++|..++++||+..
T Consensus 145 ~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~---------------------~~~rivgLSATlpN~~evA~wL~a~ 203 (766)
T COG1204 145 EEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN---------------------ELIRIVGLSATLPNAEEVADWLNAK 203 (766)
T ss_pred hcccEEEEeeeeecCCcccCceehhHHHHHHhhC---------------------cceEEEEEeeecCCHHHHHHHhCCc
Confidence 8899999999999987778888888887776322 3479999999999999999999865
No 52
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=1.9e-22 Score=212.36 Aligned_cols=168 Identities=23% Similarity=0.280 Sum_probs=125.3
Q ss_pred HCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 012319 190 RLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 269 (466)
Q Consensus 190 ~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil 269 (466)
.+||..|+|+|.++|+.++.++ |+++++|||||||++|++|++.. +..+|||
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~--dvlv~apTGsGKTl~y~lp~l~~--------------------------~~~~lVi 57 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGR--DCFVVMPTGGGKSLCYQLPALCS--------------------------DGITLVI 57 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCC--CEEEEcCCCCcHhHHHHHHHHHc--------------------------CCcEEEE
Confidence 4899999999999999997655 99999999999999999998742 2369999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHH----HhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEE
Q 012319 270 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL----LKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 345 (466)
Q Consensus 270 ~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~----l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lV 345 (466)
+|||+|+.|++..+..+ ++.+..+.|+......... ....++|||+||++|.....- ......+..+.+||
T Consensus 58 ~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~-~~~l~~~~~i~~iV 132 (470)
T TIGR00614 58 SPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRL-LQTLEERKGITLIA 132 (470)
T ss_pred ecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhH-HHHHHhcCCcCEEE
Confidence 99999999999988764 6778888888776544332 234689999999998532100 00001467899999
Q ss_pred ecccchhhccCC--HHHHH---HHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC--HHHHHHH
Q 012319 346 LDEADRMIENGH--FRELQ---SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS--ADFRKKL 415 (466)
Q Consensus 346 iDEad~ll~~g~--~~~l~---~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~--~~~~~~l 415 (466)
|||||+++++|+ ...+. .+...+ +..|+++||||++.. .+...++
T Consensus 133 iDEaH~i~~~g~~fr~~~~~l~~l~~~~-------------------------~~~~~l~lTAT~~~~~~~di~~~l 184 (470)
T TIGR00614 133 VDEAHCISQWGHDFRPDYKALGSLKQKF-------------------------PNVPIMALTATASPSVREDILRQL 184 (470)
T ss_pred EeCCcccCccccccHHHHHHHHHHHHHc-------------------------CCCceEEEecCCCHHHHHHHHHHc
Confidence 999999998874 44433 334444 357899999999753 2444444
No 53
>PRK14701 reverse gyrase; Provisional
Probab=99.89 E-value=3.9e-22 Score=231.24 Aligned_cols=150 Identities=20% Similarity=0.237 Sum_probs=118.3
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCC
Q 012319 183 LLMKSIYR-LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK 261 (466)
Q Consensus 183 ~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
.+.+.+.+ +|| .|+++|+.+||.++.++ |++++||||||||++++++++....
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~--d~li~APTGsGKTl~~~~~al~~~~----------------------- 120 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGK--SFSIVAPTGMGKSTFGAFIALFLAL----------------------- 120 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCC--CEEEEEcCCCCHHHHHHHHHHHHHh-----------------------
Confidence 34455555 899 69999999999997765 9999999999999966665543321
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCC--CcEEEEEECCCCHHHHHHH---Hhc-CCcEEEeCcHHHHHHHhCCCCcc
Q 012319 262 GHLRALIITPTRELALQVTDHLKEVAKGI--NVRVVPIVGGMSTEKQERL---LKA-RPELVVGTPGRLWELMSGGEKHL 335 (466)
Q Consensus 262 ~~~~vLil~PtreLa~Qv~~~l~~l~~~~--~~~v~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~~ 335 (466)
.++++|||+|||+||.|+++.|..++... ++++..++|+.+...+... +.. .++|||+||++|.+++...
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---- 196 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---- 196 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----
Confidence 24689999999999999999999998765 5677888999987765432 333 5999999999998876431
Q ss_pred ccCCcccEEEecccchhhc-----------cCCHHHHHH
Q 012319 336 VELHTLSFFVLDEADRMIE-----------NGHFRELQS 363 (466)
Q Consensus 336 ~~l~~l~~lViDEad~ll~-----------~g~~~~l~~ 363 (466)
. ...+++|||||||+|++ +||...+..
T Consensus 197 ~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 197 K-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred h-hCCCCEEEEECceeccccccccchhhhcCCChHHHHH
Confidence 1 26789999999999986 588777764
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.89 E-value=1e-22 Score=232.45 Aligned_cols=169 Identities=24% Similarity=0.314 Sum_probs=130.6
Q ss_pred EecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc--------
Q 012319 217 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK-------- 288 (466)
Q Consensus 217 ~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~-------- 288 (466)
|+||||||||+||.||+|+.++....... .......++++|||+|+|+|+.|+++.|+..+.
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~----------~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~ 70 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDT----------REAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRR 70 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccc----------cccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 57999999999999999999975321000 000112357999999999999999999875221
Q ss_pred ----CCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHH
Q 012319 289 ----GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 364 (466)
Q Consensus 289 ----~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~I 364 (466)
..++++..++|+++...+.+.+++.+||||+||++|..+|.+. ....|++|++|||||+|.|++..+..++..+
T Consensus 71 ~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk--~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~ 148 (1490)
T PRK09751 71 RGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR--ARETLRGVETVIIDEVHAVAGSKRGAHLALS 148 (1490)
T ss_pred cccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh--hhhhhccCCEEEEecHHHhcccccccHHHHH
Confidence 2478999999999998888888888999999999999888642 2245899999999999999976666666655
Q ss_pred HHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhh
Q 012319 365 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 417 (466)
Q Consensus 365 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~ 417 (466)
+..|... ...+.|+|+||||+++..++.+||..
T Consensus 149 LeRL~~l--------------------~~~~~QrIgLSATI~n~eevA~~L~g 181 (1490)
T PRK09751 149 LERLDAL--------------------LHTSAQRIGLSATVRSASDVAAFLGG 181 (1490)
T ss_pred HHHHHHh--------------------CCCCCeEEEEEeeCCCHHHHHHHhcC
Confidence 5554311 01468999999999999999999853
No 55
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.88 E-value=9e-22 Score=218.91 Aligned_cols=166 Identities=21% Similarity=0.244 Sum_probs=129.3
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHHHHhc----CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 012319 180 LHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQ----GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 254 (466)
Q Consensus 180 l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~----~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 254 (466)
.+..+...+.. ++| .|||+|..+|+.++.. ...|+++||+||||||.+|++|++..+..
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------------- 499 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------------- 499 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------------
Confidence 45556666655 688 5999999999999763 11399999999999999999999987742
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH---h-cCCcEEEeCcHHHHHHHhC
Q 012319 255 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---K-ARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 255 ~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l---~-~~~dIiV~TP~~L~~~l~~ 330 (466)
+++++||+||++||.|+++.|..++...++++..++|+.+...+...+ . +.++||||||.. +..
T Consensus 500 --------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~ 567 (926)
T TIGR00580 500 --------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQK 567 (926)
T ss_pred --------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhC
Confidence 358999999999999999999999988899999999988765443333 2 368999999942 322
Q ss_pred CCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
...++++.+|||||+|++. ......+..++ ..+|+|+||||+.
T Consensus 568 ----~v~f~~L~llVIDEahrfg-----v~~~~~L~~~~------------------------~~~~vL~~SATpi 610 (926)
T TIGR00580 568 ----DVKFKDLGLLIIDEEQRFG-----VKQKEKLKELR------------------------TSVDVLTLSATPI 610 (926)
T ss_pred ----CCCcccCCEEEeecccccc-----hhHHHHHHhcC------------------------CCCCEEEEecCCC
Confidence 2568899999999999852 22334445554 5689999999975
No 56
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.88 E-value=2.4e-22 Score=215.01 Aligned_cols=192 Identities=21% Similarity=0.322 Sum_probs=154.6
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
++|..+..+|..++|.+++.+. |+|+|||||||||..|+|.||+.+.+.. ...+......++|||+
T Consensus 106 f~f~~fN~iQS~vFp~aY~Sne-NMLIcAPTGsGKT~la~L~ILr~ik~~~-------------~~~~i~k~~fKiVYIa 171 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNE-NMLICAPTGSGKTVLAELCILRTIKEHE-------------EQGDIAKDDFKIVYIA 171 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCC-CEEEECCCCCCchHHHHHHHHHHHHhhc-------------cccccccCCceEEEEe
Confidence 6788899999999999998887 9999999999999999999999886421 1133445678999999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCC-ccccCCcccEEEeccc
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK-HLVELHTLSFFVLDEA 349 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~-~~~~l~~l~~lViDEa 349 (466)
|+++||..+++.+.+-+...|++|..++|++...... -..++|||+||+. |+.+.+... ....++.|++|||||+
T Consensus 172 PmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEK-wDvvTRk~~~d~~l~~~V~LviIDEV 247 (1230)
T KOG0952|consen 172 PMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEK-WDVVTRKSVGDSALFSLVRLVIIDEV 247 (1230)
T ss_pred chHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccc-eeeeeeeeccchhhhhheeeEEeeee
Confidence 9999999999999888888899999999998765543 3468999999999 677755321 1233688999999999
Q ss_pred chhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhhc
Q 012319 350 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 418 (466)
Q Consensus 350 d~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~~ 418 (466)
|.|- ...+..++.|+.++.+... ......++|++||||||-.+.+.||+.+
T Consensus 248 HlLh-d~RGpvlEtiVaRtlr~ve-----------------ssqs~IRivgLSATlPN~eDvA~fL~vn 298 (1230)
T KOG0952|consen 248 HLLH-DDRGPVLETIVARTLRLVE-----------------SSQSMIRIVGLSATLPNYEDVARFLRVN 298 (1230)
T ss_pred hhhc-CcccchHHHHHHHHHHHHH-----------------hhhhheEEEEeeccCCCHHHHHHHhcCC
Confidence 9775 5688899999877652110 1114689999999999999999999864
No 57
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.87 E-value=1.7e-21 Score=210.81 Aligned_cols=169 Identities=20% Similarity=0.284 Sum_probs=126.9
Q ss_pred HHHHHH-CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCC
Q 012319 185 MKSIYR-LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH 263 (466)
Q Consensus 185 ~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (466)
...|.. +||..|+|+|.++|+.++.++ |+++++|||+|||++|++|++.. .
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~--dvlv~apTGsGKTl~y~lpal~~--------------------------~ 65 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGR--DCLVVMPTGGGKSLCYQIPALVL--------------------------D 65 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHHHHHHc--------------------------C
Confidence 333433 799999999999999997655 99999999999999999998842 1
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHH--HHhCCCCcccc
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWE--LMSGGEKHLVE 337 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~--~l~~~~~~~~~ 337 (466)
..+|||+|+++|+.|+++.+..+ ++.+..+.++.........+ ....+|+++||++|.. ++. .+.
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-----~l~ 136 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-----HLA 136 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-----HHh
Confidence 25899999999999999988765 67777788887765543322 3467999999999873 221 123
Q ss_pred CCcccEEEecccchhhccCC--HH---HHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCH--H
Q 012319 338 LHTLSFFVLDEADRMIENGH--FR---ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA--D 410 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~--~~---~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~--~ 410 (466)
...+.+|||||||++.++|+ .. .+..+...+ +..|+++||||++... +
T Consensus 137 ~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-------------------------p~~~~v~lTAT~~~~~~~d 191 (607)
T PRK11057 137 HWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-------------------------PTLPFMALTATADDTTRQD 191 (607)
T ss_pred hCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC-------------------------CCCcEEEEecCCChhHHHH
Confidence 45789999999999998874 33 333444444 3578999999998543 3
Q ss_pred HHHHH
Q 012319 411 FRKKL 415 (466)
Q Consensus 411 ~~~~l 415 (466)
+...+
T Consensus 192 i~~~l 196 (607)
T PRK11057 192 IVRLL 196 (607)
T ss_pred HHHHh
Confidence 44444
No 58
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=9.5e-22 Score=212.82 Aligned_cols=147 Identities=19% Similarity=0.326 Sum_probs=126.1
Q ss_pred cCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhh
Q 012319 177 ELRLHPLLMKSIY-----RLGFKEP---TPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 248 (466)
Q Consensus 177 ~l~l~~~l~~~l~-----~~g~~~p---t~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~ 248 (466)
.|.+...+.+.+. ..||..| +|+|.++||.++.+. ++|++++||+|||++|+||++..++..
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~--gvIAeaqTGeGKTLAf~LP~l~~aL~g-------- 135 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHK--GFITEMQTGEGKTLTAVMPLYLNALTG-------- 135 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCC--CeEEEeCCCCChHHHHHHHHHHHHhhc--------
Confidence 4567777777765 6899999 999999999997765 999999999999999999999887531
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHH
Q 012319 249 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WEL 327 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~ 327 (466)
..++||+|||+||.|+++.+..+++.+++++++++||.+...+...+ ++||+||||++| +++
T Consensus 136 ---------------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDy 198 (970)
T PRK12899 136 ---------------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDY 198 (970)
T ss_pred ---------------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHH
Confidence 13899999999999999999999999999999999999998876554 599999999999 999
Q ss_pred HhCCCCccccC-------CcccEEEecccchhh
Q 012319 328 MSGGEKHLVEL-------HTLSFFVLDEADRMI 353 (466)
Q Consensus 328 l~~~~~~~~~l-------~~l~~lViDEad~ll 353 (466)
|.... ..+ +.+.++||||||.||
T Consensus 199 Lrd~~---~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 199 LRDNS---IATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred hhCCC---CCcCHHHhhcccccEEEEechhhhh
Confidence 96532 333 456899999999987
No 59
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.87 E-value=2.5e-21 Score=209.51 Aligned_cols=166 Identities=22% Similarity=0.344 Sum_probs=127.2
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+||..|+|+|.++|+.++.++ |+++++|||+|||++|++|++.. ...+|||+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~--dvlv~~PTG~GKTl~y~lpal~~--------------------------~g~~lVis 60 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGR--DVLVVMPTGGGKSLCYQVPALLL--------------------------KGLTVVIS 60 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCC--CEEEEcCCCccHhHHHHHHHHHc--------------------------CCcEEEEc
Confidence 899999999999999997665 99999999999999999998742 12589999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEe
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 346 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lVi 346 (466)
|+++|+.|++..|..+ ++.+..+.++.+.......+ ....+|+++||++|..... ........+.+|||
T Consensus 61 Pl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~---~~~l~~~~l~~iVi 133 (591)
T TIGR01389 61 PLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYF---LNMLQRIPIALVAV 133 (591)
T ss_pred CCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHH---HHHHhcCCCCEEEE
Confidence 9999999999998875 67888888888876554433 3578999999999864221 11234578999999
Q ss_pred cccchhhccC--CHHH---HHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCH--HHHHHHh
Q 012319 347 DEADRMIENG--HFRE---LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA--DFRKKLK 416 (466)
Q Consensus 347 DEad~ll~~g--~~~~---l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~--~~~~~l~ 416 (466)
||||++.++| |... +..+...++ ..++|+||||.+... ++..+|.
T Consensus 134 DEaH~i~~~g~~frp~y~~l~~l~~~~~-------------------------~~~vi~lTAT~~~~~~~~i~~~l~ 185 (591)
T TIGR01389 134 DEAHCVSQWGHDFRPEYQRLGSLAERFP-------------------------QVPRIALTATADAETRQDIRELLR 185 (591)
T ss_pred eCCcccccccCccHHHHHHHHHHHHhCC-------------------------CCCEEEEEeCCCHHHHHHHHHHcC
Confidence 9999999887 4444 334444443 345999999997542 4455553
No 60
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.86 E-value=4.4e-21 Score=209.79 Aligned_cols=139 Identities=25% Similarity=0.396 Sum_probs=113.2
Q ss_pred HHHHHH-HHCCCCCCcHHHHHHHHHHHhcC----CccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 012319 183 LLMKSI-YRLGFKEPTPIQKACIPAAAHQG----KVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 257 (466)
Q Consensus 183 ~l~~~l-~~~g~~~pt~iQ~~~i~~~l~~~----~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 257 (466)
.+.+.+ ..++| .||++|.++|+.++.+- ..++|++|+||||||++|++|++..+.
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------------------- 308 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------------------- 308 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-------------------
Confidence 444444 45777 69999999999997642 137999999999999999999998773
Q ss_pred cCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHH---HHh-cCCcEEEeCcHHHHHHHhCCCC
Q 012319 258 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER---LLK-ARPELVVGTPGRLWELMSGGEK 333 (466)
Q Consensus 258 ~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~---~l~-~~~dIiV~TP~~L~~~l~~~~~ 333 (466)
.+.+++||+||++||.|+++.+..++..++++++.++|+........ .+. +.++||||||+.|...
T Consensus 309 ----~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~------ 378 (681)
T PRK10917 309 ----AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD------ 378 (681)
T ss_pred ----cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc------
Confidence 25689999999999999999999999988999999999998644333 333 3599999999887431
Q ss_pred ccccCCcccEEEecccchhh
Q 012319 334 HLVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 334 ~~~~l~~l~~lViDEad~ll 353 (466)
..+.++.+|||||+|++.
T Consensus 379 --v~~~~l~lvVIDE~Hrfg 396 (681)
T PRK10917 379 --VEFHNLGLVIIDEQHRFG 396 (681)
T ss_pred --chhcccceEEEechhhhh
Confidence 457899999999999863
No 61
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.86 E-value=6.6e-21 Score=216.24 Aligned_cols=162 Identities=23% Similarity=0.265 Sum_probs=127.9
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHhc----CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcC
Q 012319 184 LMKSIYRLGFKEPTPIQKACIPAAAHQ----GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 259 (466)
Q Consensus 184 l~~~l~~~g~~~pt~iQ~~~i~~~l~~----~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
..+....++| .||++|.++|+.++.+ ...|+++||+||||||.+|+++++..+.
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------------------- 647 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------------------- 647 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---------------------
Confidence 3444566888 7999999999999764 1139999999999999999888876552
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCcc
Q 012319 260 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHL 335 (466)
Q Consensus 260 ~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~ 335 (466)
.+++|+||+||++||.|+++.|...+...++++.+++|+.+...+...+. ..++||||||+.| .. .
T Consensus 648 --~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~----~ 717 (1147)
T PRK10689 648 --NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS----D 717 (1147)
T ss_pred --cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC----C
Confidence 24689999999999999999999988777889999999988877665543 4689999999643 22 1
Q ss_pred ccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 336 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 336 ~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
..++++.+|||||+|++ |+. + ..++..++ ..+|+|+||||+.
T Consensus 718 v~~~~L~lLVIDEahrf---G~~-~-~e~lk~l~------------------------~~~qvLl~SATpi 759 (1147)
T PRK10689 718 VKWKDLGLLIVDEEHRF---GVR-H-KERIKAMR------------------------ADVDILTLTATPI 759 (1147)
T ss_pred CCHhhCCEEEEechhhc---chh-H-HHHHHhcC------------------------CCCcEEEEcCCCC
Confidence 45788999999999997 332 2 34445555 5789999999975
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.86 E-value=7.1e-21 Score=206.74 Aligned_cols=139 Identities=26% Similarity=0.394 Sum_probs=114.1
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHhcC----CccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 012319 183 LLMKSIYRLGFKEPTPIQKACIPAAAHQG----KVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 258 (466)
Q Consensus 183 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~----~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 258 (466)
.+...+..++| .||++|..+|+.++..- ..+.+++|+||||||++|++|++..+.
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-------------------- 282 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-------------------- 282 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------------------
Confidence 34455677899 79999999999997642 126899999999999999999998773
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHH---H-hcCCcEEEeCcHHHHHHHhCCCCc
Q 012319 259 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---L-KARPELVVGTPGRLWELMSGGEKH 334 (466)
Q Consensus 259 ~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~---l-~~~~dIiV~TP~~L~~~l~~~~~~ 334 (466)
.+.+++|++||++||.|+++.+..++...+++++.++|+......... + .+.++||||||+.|...
T Consensus 283 ---~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~------- 352 (630)
T TIGR00643 283 ---AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK------- 352 (630)
T ss_pred ---cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc-------
Confidence 145899999999999999999999998889999999999887653322 2 24689999999987532
Q ss_pred cccCCcccEEEecccchhh
Q 012319 335 LVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 335 ~~~l~~l~~lViDEad~ll 353 (466)
..+.++.+|||||+|++.
T Consensus 353 -~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 353 -VEFKRLALVIIDEQHRFG 370 (630)
T ss_pred -ccccccceEEEechhhcc
Confidence 457899999999999863
No 63
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.85 E-value=2.2e-21 Score=190.53 Aligned_cols=124 Identities=35% Similarity=0.502 Sum_probs=105.7
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcC---CCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 262 GHLRALIITPTRELALQVTDHLKEVAKG---INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 262 ~~~~vLil~PtreLa~Qv~~~l~~l~~~---~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.|.+||+-|+|+||.|+++.+.++-.+ ..++...+.||.....|...+..+.+|+|+||+||.++++.+ ...|
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g---~~~l 361 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG---LVTL 361 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc---ceee
Confidence 3589999999999999999966665433 356777889999999999999999999999999999999765 4779
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
+.+++||+||||.+|..|+-+.|..+...+|....+. ...|.+++|||+.
T Consensus 362 t~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg------------------~rlq~~vCsatlh 411 (725)
T KOG0349|consen 362 THCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDG------------------FRLQSPVCSATLH 411 (725)
T ss_pred eeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCC------------------cccccceeeeEEe
Confidence 9999999999999998899999999988887543322 5689999999996
No 64
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.83 E-value=1.5e-20 Score=190.60 Aligned_cols=198 Identities=25% Similarity=0.299 Sum_probs=163.1
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
....+|.|++.+.+.|...|+..+.|+|..++..-|..|. |++|.++|+||||++.-|.=+..++..
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~-nllVVSaTasGKTLIgElAGi~~~l~~------------ 260 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGE-NLLVVSATASGKTLIGELAGIPRLLSG------------ 260 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCC-ceEEEeccCCCcchHHHhhCcHHHHhC------------
Confidence 4567899999999999999999999999999998888887 999999999999999988888888643
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHH----HHhcCCcEEEeCcHHHHHHH
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER----LLKARPELVVGTPGRLWELM 328 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~----~l~~~~dIiV~TP~~L~~~l 328 (466)
+-+.|||+|..+||+|-+..|+.-...+++.+..-+|-.-...... .....+||||||.+.+-.+|
T Consensus 261 ----------g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lL 330 (830)
T COG1202 261 ----------GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLL 330 (830)
T ss_pred ----------CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHH
Confidence 4589999999999999999999988888888877776544332221 11235799999999998888
Q ss_pred hCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 329 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 329 ~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
..+ ..+.+|..|||||+|.|-+...+..+.-++..|...- +..|+|.+|||+.|+
T Consensus 331 Rtg----~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~---------------------~~AQ~i~LSATVgNp 385 (830)
T COG1202 331 RTG----KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF---------------------PGAQFIYLSATVGNP 385 (830)
T ss_pred HcC----CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC---------------------CCCeEEEEEeecCCh
Confidence 665 6689999999999998877666666666665554211 468999999999999
Q ss_pred HHHHHHHhhc
Q 012319 409 ADFRKKLKHG 418 (466)
Q Consensus 409 ~~~~~~l~~~ 418 (466)
.++++.|...
T Consensus 386 ~elA~~l~a~ 395 (830)
T COG1202 386 EELAKKLGAK 395 (830)
T ss_pred HHHHHHhCCe
Confidence 9999998753
No 65
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.82 E-value=7.7e-19 Score=161.28 Aligned_cols=171 Identities=38% Similarity=0.572 Sum_probs=136.1
Q ss_pred HCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 012319 190 RLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 269 (466)
Q Consensus 190 ~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil 269 (466)
..++..|+++|.+++..++...+ .++++++||||||.+++.+++..+... ...++||+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~-~~~i~~~~GsGKT~~~~~~~~~~~~~~---------------------~~~~~l~~ 60 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLR-DVILAAPTGSGKTLAALLPALEALKRG---------------------KGKRVLVL 60 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCC-cEEEECCCCCchhHHHHHHHHHHhccc---------------------CCCcEEEE
Confidence 35677899999999999976523 999999999999999999998887431 13479999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCC-cEEEeCcHHHHHHHhCCCCccccCCcccEEEecc
Q 012319 270 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARP-ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 348 (466)
Q Consensus 270 ~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~-dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDE 348 (466)
+||+.++.|+...+..++.........+.++.........+..+. +|+++|++.|.+.+.... .....+.+|||||
T Consensus 61 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE 137 (201)
T smart00487 61 VPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDE 137 (201)
T ss_pred eCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEEC
Confidence 999999999999999887655434555566666455555555555 999999999999886532 4567889999999
Q ss_pred cchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCH
Q 012319 349 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 409 (466)
Q Consensus 349 ad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~ 409 (466)
||.+....+...+..++..++ ...+++++|||++...
T Consensus 138 ~h~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~saT~~~~~ 174 (201)
T smart00487 138 AHRLLDGGFGDQLEKLLKLLP------------------------KNVQLLLLSATPPEEI 174 (201)
T ss_pred HHHHhcCCcHHHHHHHHHhCC------------------------ccceEEEEecCCchhH
Confidence 999975478888888888774 5689999999997544
No 66
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.81 E-value=5.8e-20 Score=187.19 Aligned_cols=154 Identities=16% Similarity=0.252 Sum_probs=123.6
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-Cc----EEEEEEC---------------CCCHHHHHHHHh
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV----RVVPIVG---------------GMSTEKQERLLK 311 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~----~v~~~~g---------------g~~~~~~~~~l~ 311 (466)
.+.+.++++.++|+||||+|+|..|.++++.|..++... .+ +...-+| +....+....+.
T Consensus 26 ~~~~~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~ 105 (442)
T PF06862_consen 26 DEDEFRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFS 105 (442)
T ss_pred ccchhhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcC
Confidence 356789999999999999999999999999999987641 10 0000011 111112222221
Q ss_pred c------------------------CCcEEEeCcHHHHHHHhC---CCCccccCCcccEEEecccchhhccCCHHHHHHH
Q 012319 312 A------------------------RPELVVGTPGRLWELMSG---GEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 364 (466)
Q Consensus 312 ~------------------------~~dIiV~TP~~L~~~l~~---~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~I 364 (466)
+ .+|||||+|.+|...+.. .......|++|+++|||.||.|+ |++|+|+..|
T Consensus 106 GN~DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v 184 (442)
T PF06862_consen 106 GNNDDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHV 184 (442)
T ss_pred CCccceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHH
Confidence 1 279999999999999975 23344559999999999999998 9999999999
Q ss_pred HHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 365 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 365 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
+++|+..|+..|+||++|+|.|+++++++..||||+||+..+
T Consensus 185 ~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~ 226 (442)
T PF06862_consen 185 FEHLNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQT 226 (442)
T ss_pred HHHhccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCC
Confidence 999999999999999999999999999999999999999996
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.80 E-value=4.5e-19 Score=187.95 Aligned_cols=150 Identities=20% Similarity=0.174 Sum_probs=113.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 193 FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 193 ~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
...|+++|.++++.++.++ +.++++|||+|||+++++. ...++.. ...++|||+||
T Consensus 112 ~~~~r~~Q~~av~~~l~~~--~~il~apTGsGKT~i~~~l-~~~~~~~---------------------~~~~vLilvpt 167 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNN--RRLLNLPTSAGKSLIQYLL-SRYYLEN---------------------YEGKVLIIVPT 167 (501)
T ss_pred cCCCCHHHHHHHHHHHhcC--ceEEEeCCCCCHHHHHHHH-HHHHHhc---------------------CCCeEEEEECc
Confidence 3589999999999997655 8899999999999976542 2222211 12389999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchh
Q 012319 273 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~l 352 (466)
++|+.|+.+.|..++......+..+.||.... ...+|+|+||++|..... ..+..+.+|||||||++
T Consensus 168 ~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~ 234 (501)
T PHA02558 168 TSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLF 234 (501)
T ss_pred HHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh------hhccccCEEEEEchhcc
Confidence 99999999999988654444565667765432 357999999999976431 24678999999999998
Q ss_pred hccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 353 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 353 l~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
.. ..+..++..++ ..+|+++||||+..
T Consensus 235 ~~----~~~~~il~~~~------------------------~~~~~lGLTATp~~ 261 (501)
T PHA02558 235 TG----KSLTSIITKLD------------------------NCKFKFGLTGSLRD 261 (501)
T ss_pred cc----hhHHHHHHhhh------------------------ccceEEEEeccCCC
Confidence 74 34566776665 45789999999974
No 68
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.79 E-value=7e-19 Score=193.04 Aligned_cols=171 Identities=22% Similarity=0.283 Sum_probs=142.1
Q ss_pred HHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEE
Q 012319 188 IYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 267 (466)
Q Consensus 188 l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 267 (466)
....+| .|.++|++++-.+ ..+. .|++|||||||||++.-..+...+.. +-+++
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~L-er~e-sVlV~ApTssGKTvVaeyAi~~al~~-----------------------~qrvi 166 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAIL-ERGE-SVLVCAPTSSGKTVVAEYAIALALRD-----------------------GQRVI 166 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHH-hCCC-cEEEEccCCCCcchHHHHHHHHHHHc-----------------------CCceE
Confidence 445777 7999999999887 6665 99999999999999876655555432 23699
Q ss_pred EEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEec
Q 012319 268 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 347 (466)
Q Consensus 268 il~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViD 347 (466)
|++|.++|.+|.++.|...+....-.+++++|+.. +...+.|+|+|.+.|..++-.+ ...+..+.+||+|
T Consensus 167 YTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg---~~~~~~i~~ViFD 236 (1041)
T COG4581 167 YTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRG---SESLRDIEWVVFD 236 (1041)
T ss_pred eccchhhhhhhHHHHHHHHhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccC---cccccccceEEEE
Confidence 99999999999999998876544223566677654 3456889999999999999665 3678999999999
Q ss_pred ccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhhc
Q 012319 348 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 418 (466)
Q Consensus 348 Ead~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~~ 418 (466)
|+|.|-|...+..++.++-++| ...|+|+||||++|+.+|..|+...
T Consensus 237 EvHyi~D~eRG~VWEE~Ii~lP------------------------~~v~~v~LSATv~N~~EF~~Wi~~~ 283 (1041)
T COG4581 237 EVHYIGDRERGVVWEEVIILLP------------------------DHVRFVFLSATVPNAEEFAEWIQRV 283 (1041)
T ss_pred eeeeccccccchhHHHHHHhcC------------------------CCCcEEEEeCCCCCHHHHHHHHHhc
Confidence 9999999999999999999998 6789999999999999999999854
No 69
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.79 E-value=2.2e-18 Score=190.08 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=114.7
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 282 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~ 282 (466)
.+..+ ..+. ++|++|+||||||.+|.+++++... .+.++||+.|||++|.|+++.
T Consensus 10 i~~~l-~~~~-~vIi~a~TGSGKTT~vpl~lL~~~~-----------------------~~~~ilvlqPrR~aA~qiA~r 64 (819)
T TIGR01970 10 LRDAL-AAHP-QVVLEAPPGAGKSTAVPLALLDAPG-----------------------IGGKIIMLEPRRLAARSAAQR 64 (819)
T ss_pred HHHHH-HcCC-cEEEECCCCCCHHHHHHHHHHHhhc-----------------------cCCeEEEEeCcHHHHHHHHHH
Confidence 33344 5555 9999999999999999999998651 134899999999999999998
Q ss_pred HHH-HHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccc-hhhccCCHHH
Q 012319 283 LKE-VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD-RMIENGHFRE 360 (466)
Q Consensus 283 l~~-l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad-~ll~~g~~~~ 360 (466)
+.. +....+..|+..+++.. ....+++|+|+|||+|++++.++ ..|+++++||||||| ++++..+.-.
T Consensus 65 va~~~~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ 134 (819)
T TIGR01970 65 LASQLGEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLA 134 (819)
T ss_pred HHHHhCCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHH
Confidence 864 44445666666665533 23456899999999999999653 569999999999999 5777666433
Q ss_pred -HHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHH
Q 012319 361 -LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 415 (466)
Q Consensus 361 -l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l 415 (466)
+..++..++ ...|+|+||||+... .+...+
T Consensus 135 ll~~i~~~lr------------------------~dlqlIlmSATl~~~-~l~~~l 165 (819)
T TIGR01970 135 LALDVQSSLR------------------------EDLKILAMSATLDGE-RLSSLL 165 (819)
T ss_pred HHHHHHHhcC------------------------CCceEEEEeCCCCHH-HHHHHc
Confidence 345555555 578999999999743 344444
No 70
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.78 E-value=2e-18 Score=186.40 Aligned_cols=164 Identities=15% Similarity=0.053 Sum_probs=114.5
Q ss_pred cHHHHHHHHHHHhcCCccEEEecCCCCchhHH---------HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEE
Q 012319 197 TPIQKACIPAAAHQGKVDIIGAAETGSGKTLA---------FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 267 (466)
Q Consensus 197 t~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~---------~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 267 (466)
..+|.++++.++.++ ++|++|+||||||.+ |++|.+..+..- .......+++
T Consensus 166 ~~iQ~qil~~i~~gk--dvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~-----------------~~~~~~~~il 226 (675)
T PHA02653 166 PDVQLKIFEAWISRK--PVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI-----------------DPNFIERPIV 226 (675)
T ss_pred HHHHHHHHHHHHhCC--CEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc-----------------ccccCCcEEE
Confidence 358999999996655 999999999999997 334444443210 0122345899
Q ss_pred EEeCcHHHHHHHHHHHHHHHcC---CCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEE
Q 012319 268 IITPTRELALQVTDHLKEVAKG---INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 344 (466)
Q Consensus 268 il~PtreLa~Qv~~~l~~l~~~---~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~l 344 (466)
|++|||+||.|+...+...... .+..+.+.+||... .+........+|||+|++.. ...|+++++|
T Consensus 227 vt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~----------l~~L~~v~~V 295 (675)
T PHA02653 227 LSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT----------LNKLFDYGTV 295 (675)
T ss_pred EECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc----------ccccccCCEE
Confidence 9999999999999998876543 35677888999873 32233334679999997631 1347899999
Q ss_pred EecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC-HHHHHHH
Q 012319 345 VLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRKKL 415 (466)
Q Consensus 345 ViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~-~~~~~~l 415 (466)
||||||.+..++ +.+..++..+.. ..+|+++||||++.. ..+.+.+
T Consensus 296 VIDEaHEr~~~~--DllL~llk~~~~-----------------------~~rq~ILmSATl~~dv~~l~~~~ 342 (675)
T PHA02653 296 IIDEVHEHDQIG--DIIIAVARKHID-----------------------KIRSLFLMTATLEDDRDRIKEFF 342 (675)
T ss_pred EccccccCccch--hHHHHHHHHhhh-----------------------hcCEEEEEccCCcHhHHHHHHHh
Confidence 999999987665 445555543321 346999999999743 3444444
No 71
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.78 E-value=3.5e-18 Score=188.76 Aligned_cols=148 Identities=22% Similarity=0.242 Sum_probs=111.3
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHH-HH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE-VA 287 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~-l~ 287 (466)
..++ ++|++|+||||||.+|.+++++... ...++||+.|||++|.|+++.+.. +.
T Consensus 18 ~~~~-~vvv~A~TGSGKTt~~pl~lL~~~~-----------------------~~~~ilvlqPrR~aA~qia~rva~~l~ 73 (812)
T PRK11664 18 KTAP-QVLLKAPTGAGKSTWLPLQLLQHGG-----------------------INGKIIMLEPRRLAARNVAQRLAEQLG 73 (812)
T ss_pred HhCC-CEEEEcCCCCCHHHHHHHHHHHcCC-----------------------cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 5555 9999999999999999999987531 123899999999999999999854 44
Q ss_pred cCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch-hhccCC-HHHHHHHH
Q 012319 288 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MIENGH-FRELQSII 365 (466)
Q Consensus 288 ~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~-ll~~g~-~~~l~~Il 365 (466)
...+..|+..+++... .....+|+|+|||+|++++..+ ..|+++.+|||||||. .++..+ ...+..++
T Consensus 74 ~~~g~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~ 143 (812)
T PRK11664 74 EKPGETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQ 143 (812)
T ss_pred cccCceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHH
Confidence 4567778777776542 2345689999999999998653 5699999999999996 454433 23344555
Q ss_pred HhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHH
Q 012319 366 DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 415 (466)
Q Consensus 366 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l 415 (466)
..++ ...|+|+||||++. ..+...+
T Consensus 144 ~~lr------------------------~~lqlilmSATl~~-~~l~~~~ 168 (812)
T PRK11664 144 QGLR------------------------DDLKLLIMSATLDN-DRLQQLL 168 (812)
T ss_pred HhCC------------------------ccceEEEEecCCCH-HHHHHhc
Confidence 5565 57899999999974 3344444
No 72
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.76 E-value=4.6e-18 Score=180.30 Aligned_cols=167 Identities=22% Similarity=0.180 Sum_probs=128.7
Q ss_pred CCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 192 GFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 192 g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
..-.++.+|.+.+..+| + + |+|+++|||+|||++++.-+++|+-.. +..++||++|
T Consensus 59 ~~~~lR~YQ~eivq~AL-g-k-Ntii~lPTG~GKTfIAa~Vm~nh~rw~---------------------p~~KiVF~aP 114 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-G-K-NTIIALPTGSGKTFIAAVIMKNHFEWR---------------------PKGKVVFLAP 114 (746)
T ss_pred CcccccHHHHHHhHHhh-c-C-CeEEEeecCCCccchHHHHHHHHHhcC---------------------CcceEEEeeC
Confidence 34478999999999987 4 4 999999999999999999999998421 2358999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ 351 (466)
|+-|+.|+...+..++.. ..+....||.........+....+|+|+||..|.+-|..+.. ..|+.+.++||||||+
T Consensus 115 ~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~--~~ls~fs~iv~DE~Hr 190 (746)
T KOG0354|consen 115 TRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH--DELSDFSLIVFDECHR 190 (746)
T ss_pred CchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc--cccceEEEEEEccccc
Confidence 999999999777776543 677777777655455556667889999999999999876532 2289999999999999
Q ss_pred hhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCH
Q 012319 352 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 409 (466)
Q Consensus 352 ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~ 409 (466)
-....-+..|..-+-.++. ...|+|++|||++...
T Consensus 191 a~kn~~Y~~Vmr~~l~~k~-----------------------~~~qILgLTASpG~~~ 225 (746)
T KOG0354|consen 191 TSKNHPYNNIMREYLDLKN-----------------------QGNQILGLTASPGSKL 225 (746)
T ss_pred ccccccHHHHHHHHHHhhh-----------------------ccccEEEEecCCCccH
Confidence 8655455555533333331 3449999999998543
No 73
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.76 E-value=3.1e-17 Score=179.17 Aligned_cols=122 Identities=21% Similarity=0.303 Sum_probs=99.7
Q ss_pred CCcHHHHHHHHHHHhc--CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 195 EPTPIQKACIPAAAHQ--GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~--~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
.+|+.|.+++..++.. +. +++++|+||||||.+|+.++...+.. +.++|||+||
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~-~~Ll~~~TGSGKT~v~l~~i~~~l~~-----------------------g~~vLvLvPt 199 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFS-PFLLDGVTGSGKTEVYLQAIAEVLAQ-----------------------GKQALVLVPE 199 (679)
T ss_pred CCCHHHHHHHHHHHhccCCC-cEEEECCCCChHHHHHHHHHHHHHHc-----------------------CCeEEEEeCc
Confidence 6899999999999763 34 89999999999999998877666521 3579999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecc
Q 012319 273 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 348 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDE 348 (466)
++|+.|+++.|...+ +.++..++|+.+.......+ .+.++||||||+.+. ..++++.+|||||
T Consensus 200 ~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDE 266 (679)
T PRK05580 200 IALTPQMLARFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDE 266 (679)
T ss_pred HHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEEC
Confidence 999999999998764 57889999998876544333 346899999998863 4478899999999
Q ss_pred cchhh
Q 012319 349 ADRMI 353 (466)
Q Consensus 349 ad~ll 353 (466)
+|...
T Consensus 267 eh~~s 271 (679)
T PRK05580 267 EHDSS 271 (679)
T ss_pred CCccc
Confidence 99654
No 74
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.76 E-value=2.1e-18 Score=175.57 Aligned_cols=145 Identities=21% Similarity=0.144 Sum_probs=100.4
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
+++++||||||||++|++|++..+.. ..+.++||++|||+|+.|+++.+..++.. .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---------------------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~ 56 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---------------------QKADRVIIALPTRATINAMYRRAKELFGS---N 56 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---------------------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---c
Confidence 68999999999999999999987532 12458999999999999999999998642 3
Q ss_pred EEEEECCCCHH------------HHHHHH-h-----cCCcEEEeCcHHHHHHHhCCCC-ccccCC--cccEEEecccchh
Q 012319 294 VVPIVGGMSTE------------KQERLL-K-----ARPELVVGTPGRLWELMSGGEK-HLVELH--TLSFFVLDEADRM 352 (466)
Q Consensus 294 v~~~~gg~~~~------------~~~~~l-~-----~~~dIiV~TP~~L~~~l~~~~~-~~~~l~--~l~~lViDEad~l 352 (466)
++.++|+.... ...... . -..+|+|+||++++..+..... ....+. ..++|||||||.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~ 136 (358)
T TIGR01587 57 LGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFY 136 (358)
T ss_pred cEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCC
Confidence 44444443210 010111 1 2368999999999988754211 111122 2379999999999
Q ss_pred hccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 353 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 353 l~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
.+.++. .+..++..+.. ...|+|+||||++
T Consensus 137 ~~~~~~-~l~~~l~~l~~-----------------------~~~~~i~~SATlp 166 (358)
T TIGR01587 137 DEYTLA-LILAVLEVLKD-----------------------NDVPILLMSATLP 166 (358)
T ss_pred CHHHHH-HHHHHHHHHHH-----------------------cCCCEEEEecCch
Confidence 865443 36666665541 3579999999997
No 75
>PRK13766 Hef nuclease; Provisional
Probab=99.75 E-value=9.8e-17 Score=179.13 Aligned_cols=164 Identities=23% Similarity=0.265 Sum_probs=126.0
Q ss_pred CCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 192 GFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 192 g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
+...|+++|..++..++. + ++|+++|||+|||++|++++.+.+. . .+.++|||+|
T Consensus 12 ~~~~~r~yQ~~~~~~~l~-~--n~lv~~ptG~GKT~~a~~~i~~~l~-~---------------------~~~~vLvl~P 66 (773)
T PRK13766 12 NTIEARLYQQLLAATALK-K--NTLVVLPTGLGKTAIALLVIAERLH-K---------------------KGGKVLILAP 66 (773)
T ss_pred CcCCccHHHHHHHHHHhc-C--CeEEEcCCCccHHHHHHHHHHHHHH-h---------------------CCCeEEEEeC
Confidence 344789999999988754 4 8999999999999999998888762 1 1348999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ 351 (466)
|++|+.|+...+..++...+..+..+.|+...... ..+...++|+|+||..|...+..+ ...+..+.+|||||||+
T Consensus 67 t~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~ 142 (773)
T PRK13766 67 TKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHR 142 (773)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCcc
Confidence 99999999999998865445578888888877543 344556899999999998776443 35678899999999999
Q ss_pred hhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 352 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 352 ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
+.....+..+...+...+ ..+++++||||....
T Consensus 143 ~~~~~~~~~i~~~~~~~~------------------------~~~~il~lTaTP~~~ 175 (773)
T PRK13766 143 AVGNYAYVYIAERYHEDA------------------------KNPLVLGLTASPGSD 175 (773)
T ss_pred ccccccHHHHHHHHHhcC------------------------CCCEEEEEEcCCCCC
Confidence 875444444444433322 457899999998544
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.74 E-value=4.1e-17 Score=165.86 Aligned_cols=130 Identities=20% Similarity=0.201 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHH
Q 012319 199 IQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 278 (466)
Q Consensus 199 iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Q 278 (466)
+|.++++.+..++..+++++||||||||++|++|++.. ..++||++|+++|+.|
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------------------~~~~~~~~P~~aL~~~ 54 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------------------ENDTIALYPTNALIED 54 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------------------CCCEEEEeChHHHHHH
Confidence 48999999976653247899999999999999998842 1258999999999999
Q ss_pred HHHHHHHHHcCC----CcEEEEEECCCCHHH--H------------------HHHHhcCCcEEEeCcHHHHHHHhCCCC-
Q 012319 279 VTDHLKEVAKGI----NVRVVPIVGGMSTEK--Q------------------ERLLKARPELVVGTPGRLWELMSGGEK- 333 (466)
Q Consensus 279 v~~~l~~l~~~~----~~~v~~~~gg~~~~~--~------------------~~~l~~~~dIiV~TP~~L~~~l~~~~~- 333 (466)
+++.+..++..+ ++.+..+.|.+..+. . .......++|+++||..|..++.....
T Consensus 55 ~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~ 134 (357)
T TIGR03158 55 QTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYID 134 (357)
T ss_pred HHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccC
Confidence 999999887432 456666666532210 0 011124688999999999776643111
Q ss_pred ----ccccCCcccEEEecccchhhc
Q 012319 334 ----HLVELHTLSFFVLDEADRMIE 354 (466)
Q Consensus 334 ----~~~~l~~l~~lViDEad~ll~ 354 (466)
....+.++++|||||+|.+-.
T Consensus 135 ~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 135 RGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred cccchhhhhcCCCEEEEecccccCc
Confidence 111368899999999998753
No 77
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=3.7e-18 Score=181.36 Aligned_cols=167 Identities=21% Similarity=0.311 Sum_probs=138.5
Q ss_pred HHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHH--HHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEE
Q 012319 189 YRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF--GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 266 (466)
Q Consensus 189 ~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~--~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 266 (466)
....| .|..+|++||-++ ..+. .|+|.|+|.+|||+++ .+.+.+.- +.|+
T Consensus 292 ~~~pF-elD~FQk~Ai~~l-erg~-SVFVAAHTSAGKTvVAEYAialaq~h-------------------------~TR~ 343 (1248)
T KOG0947|consen 292 LIYPF-ELDTFQKEAIYHL-ERGD-SVFVAAHTSAGKTVVAEYAIALAQKH-------------------------MTRT 343 (1248)
T ss_pred hhCCC-CccHHHHHHHHHH-HcCC-eEEEEecCCCCcchHHHHHHHHHHhh-------------------------ccce
Confidence 34556 7999999999998 5555 9999999999999984 44433322 4589
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEe
Q 012319 267 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 346 (466)
Q Consensus 267 Lil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lVi 346 (466)
+|.+|-++|.+|-++.|+..+...| .++|+.. +.....++|+|.+.|..+|-++. .-++++++||+
T Consensus 344 iYTSPIKALSNQKfRDFk~tF~Dvg----LlTGDvq-------inPeAsCLIMTTEILRsMLYrga---dliRDvE~VIF 409 (1248)
T KOG0947|consen 344 IYTSPIKALSNQKFRDFKETFGDVG----LLTGDVQ-------INPEASCLIMTTEILRSMLYRGA---DLIRDVEFVIF 409 (1248)
T ss_pred EecchhhhhccchHHHHHHhccccc----eeeccee-------eCCCcceEeehHHHHHHHHhccc---chhhccceEEE
Confidence 9999999999999999998876544 5677654 33457899999999999997652 44788999999
Q ss_pred cccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhhcccc
Q 012319 347 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK 421 (466)
Q Consensus 347 DEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~~~~~ 421 (466)
||+|.+.|..++-.++.++-+|| ...++|++|||++|..+|++|+.+...+
T Consensus 410 DEVHYiND~eRGvVWEEViIMlP------------------------~HV~~IlLSATVPN~~EFA~WIGRtK~K 460 (1248)
T KOG0947|consen 410 DEVHYINDVERGVVWEEVIIMLP------------------------RHVNFILLSATVPNTLEFADWIGRTKQK 460 (1248)
T ss_pred eeeeecccccccccceeeeeecc------------------------ccceEEEEeccCCChHHHHHHhhhccCc
Confidence 99999999888888999999998 7899999999999999999999875444
No 78
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.74 E-value=1.4e-16 Score=160.79 Aligned_cols=170 Identities=24% Similarity=0.325 Sum_probs=132.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 193 FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 193 ~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
.-.++.+|......++. + |+|++.|||-|||++.++-+.+++.. .++ ++|||+||
T Consensus 13 ~ie~R~YQ~~i~a~al~-~--NtLvvlPTGLGKT~IA~~V~~~~l~~---------------------~~~-kvlfLAPT 67 (542)
T COG1111 13 TIEPRLYQLNIAAKALF-K--NTLVVLPTGLGKTFIAAMVIANRLRW---------------------FGG-KVLFLAPT 67 (542)
T ss_pred cccHHHHHHHHHHHHhh-c--CeEEEecCCccHHHHHHHHHHHHHHh---------------------cCC-eEEEecCC
Confidence 34788899888877743 4 89999999999999999988888743 234 89999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchh
Q 012319 273 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~l 352 (466)
+-|+.|.+..|.+...-..-.++.+.|....++....| ....|+|+||..+.+-|..| .+++.++.+||+||||+-
T Consensus 68 KPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRA 143 (542)
T COG1111 68 KPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRA 143 (542)
T ss_pred chHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhc
Confidence 99999999999998866666888999999887665544 45689999999998877554 488999999999999998
Q ss_pred hccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHH
Q 012319 353 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 415 (466)
Q Consensus 353 l~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l 415 (466)
. |++..+.-.-.++.. .+++.++++|||.+...+-....
T Consensus 144 v--GnyAYv~Va~~y~~~----------------------~k~~~ilgLTASPGs~~ekI~eV 182 (542)
T COG1111 144 V--GNYAYVFVAKEYLRS----------------------AKNPLILGLTASPGSDLEKIQEV 182 (542)
T ss_pred c--CcchHHHHHHHHHHh----------------------ccCceEEEEecCCCCCHHHHHHH
Confidence 4 444443333223321 15678999999999776555444
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.72 E-value=5.1e-17 Score=174.31 Aligned_cols=133 Identities=26% Similarity=0.368 Sum_probs=109.3
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. .|+++|..+.+.+ +.| . |+.++||+|||++|++|++-..+. +.+|+|++
T Consensus 53 lg~-~p~~vQlig~~~l-~~G--~-Iaem~TGeGKTLva~lpa~l~aL~-----------------------G~~V~VvT 104 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIAL-HKG--K-IAEMKTGEGKTLTATLPAYLNALT-----------------------GKGVHVVT 104 (745)
T ss_pred hCC-CccchHHhhhhhh-cCC--c-eeeecCCCccHHHHHHHHHHHHHh-----------------------CCCEEEEc
Confidence 566 7999999998876 554 3 899999999999999999644331 33699999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCCC---CccccCCcccEEEe
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVL 346 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~l~~lVi 346 (466)
||++||.|.++.+..++..+++++++++|+.+....... ..++|+||||++| .++|.... .....++.+.++||
T Consensus 105 pt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aII 182 (745)
T TIGR00963 105 VNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAII 182 (745)
T ss_pred CCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEe
Confidence 999999999999999999999999999999987554433 3589999999999 88885431 11245789999999
Q ss_pred cccchhh
Q 012319 347 DEADRMI 353 (466)
Q Consensus 347 DEad~ll 353 (466)
||||+|+
T Consensus 183 DEaDs~L 189 (745)
T TIGR00963 183 DEVDSIL 189 (745)
T ss_pred ecHHHHh
Confidence 9999987
No 80
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1e-16 Score=174.45 Aligned_cols=134 Identities=22% Similarity=0.332 Sum_probs=108.8
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. .|+++|..+++.+ +.| . |+.+.||+|||++|++|++...+. +.+|+|++
T Consensus 75 ~g~-~p~~vQl~~~~~l-~~G--~-Iaem~TGeGKTL~a~lp~~l~al~-----------------------G~~v~VvT 126 (790)
T PRK09200 75 LGM-RPYDVQLIGALVL-HEG--N-IAEMQTGEGKTLTATMPLYLNALE-----------------------GKGVHLIT 126 (790)
T ss_pred hCC-CCchHHHHhHHHH-cCC--c-eeeecCCCcchHHHHHHHHHHHHc-----------------------CCCeEEEe
Confidence 577 8999999999877 555 3 899999999999999999866542 56899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCCC---CccccCCcccEEEe
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVL 346 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~l~~lVi 346 (466)
||++||.|.+..+..++..+++++++++|+.+...+.+. ...+||+||||++| .++|.... .....++.+.++||
T Consensus 127 pt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~Iv 205 (790)
T PRK09200 127 VNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAII 205 (790)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEE
Confidence 999999999999999999999999999999984333333 35699999999999 55443211 11235688999999
Q ss_pred cccchhh
Q 012319 347 DEADRMI 353 (466)
Q Consensus 347 DEad~ll 353 (466)
||||.||
T Consensus 206 DEaDsiL 212 (790)
T PRK09200 206 DEIDSIL 212 (790)
T ss_pred eccccce
Confidence 9999876
No 81
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=1.8e-16 Score=169.09 Aligned_cols=133 Identities=25% Similarity=0.294 Sum_probs=107.9
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. .|+++|..++|.++ .| . |+.+.||+|||++|++|++.+.+ .+++|+||+
T Consensus 100 lg~-~p~~VQ~~~~~~ll-~G--~-Iae~~TGeGKTla~~lp~~~~al-----------------------~G~~v~VvT 151 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALL-SG--R-LAEMQTGEGKTLTATLPAGTAAL-----------------------AGLPVHVIT 151 (656)
T ss_pred hCC-CCChHHHHHHHHHh-CC--C-eeeeeCCCCcHHHHHHHHHHHhh-----------------------cCCeEEEEc
Confidence 566 79999999999995 45 3 89999999999999999998764 256899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCCC-----------------
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE----------------- 332 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~----------------- 332 (466)
||++||.|.+..+..++..+++++++++||.+.. .+....++||+|||..-| .+.|...-
T Consensus 152 ptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~ 229 (656)
T PRK12898 152 VNDYLAERDAELMRPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLH 229 (656)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhc
Confidence 9999999999999999999999999999998753 444556899999999988 44443210
Q ss_pred -----CccccCCcccEEEecccchhh
Q 012319 333 -----KHLVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 333 -----~~~~~l~~l~~lViDEad~ll 353 (466)
........+.+.||||||.+|
T Consensus 230 ~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 230 GRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred cccCchhhhcccccceeEeeccccee
Confidence 001224668899999999865
No 82
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.5e-16 Score=173.10 Aligned_cols=131 Identities=24% Similarity=0.342 Sum_probs=107.4
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. .|+++|...--.+ +.|+ |+.++||+|||++|++|++..++. +..|+||+
T Consensus 79 lg~-~~ydvQliGg~~L-h~G~---Iaem~TGeGKTL~a~Lpa~~~al~-----------------------G~~V~VvT 130 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVL-HEGN---IAEMRTGEGKTLVATLPAYLNAIS-----------------------GRGVHIVT 130 (896)
T ss_pred cCC-CcchHHHhhhhhh-ccCc---cccccCCCCchHHHHHHHHHHHhc-----------------------CCCEEEEc
Confidence 555 6888886655444 6664 789999999999999999977752 23699999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCCCCcccc-----CCcccEE
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEKHLVE-----LHTLSFF 344 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~~~~~~-----l~~l~~l 344 (466)
||++||.|.++.+..++..+++.+++++||.+...+.... .+||+||||++| .++|..+. ... .+.+.++
T Consensus 131 pn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~--~~~~~~~v~r~l~~~ 206 (896)
T PRK13104 131 VNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNM--AFSLTDKVQRELNFA 206 (896)
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCC--ccchHhhhccccceE
Confidence 9999999999999999999999999999999877664443 689999999999 89886531 122 3689999
Q ss_pred Eecccchhh
Q 012319 345 VLDEADRMI 353 (466)
Q Consensus 345 ViDEad~ll 353 (466)
||||||.||
T Consensus 207 IvDEaDsiL 215 (896)
T PRK13104 207 IVDEVDSIL 215 (896)
T ss_pred EeccHhhhh
Confidence 999999976
No 83
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.69 E-value=1.2e-16 Score=172.32 Aligned_cols=135 Identities=22% Similarity=0.283 Sum_probs=100.7
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. .|+++|...++.+ + . ..|+.++||+|||++|++|++.+.+. +..|+||+
T Consensus 67 lgl-rpydVQlig~l~l-~-~--G~Iaem~TGeGKTLta~Lpa~l~aL~-----------------------g~~V~VVT 118 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVL-H-Q--GNIAEMKTGEGKTLTATMPLYLNALT-----------------------GKGAMLVT 118 (762)
T ss_pred cCC-CccHHHHHHHHHh-c-C--CceeEecCCcchHHHHHHHHHHHhhc-----------------------CCceEEeC
Confidence 455 5666665555544 3 3 35999999999999999998766542 34699999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCC---HHHHHHHHhcCCcEEEeCcHHH-HHHHhCC---CCccccCCcccE
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMS---TEKQERLLKARPELVVGTPGRL-WELMSGG---EKHLVELHTLSF 343 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~---~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~---~~~~~~l~~l~~ 343 (466)
|+++||.|.++.+..++..+++.+.+++++.. .....+....+++|++|||++| .+.|... ......++.+.+
T Consensus 119 pn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~ 198 (762)
T TIGR03714 119 TNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNY 198 (762)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcE
Confidence 99999999999999999999999998887632 2223334446799999999999 4444211 112244788999
Q ss_pred EEecccchhh
Q 012319 344 FVLDEADRMI 353 (466)
Q Consensus 344 lViDEad~ll 353 (466)
+||||||.||
T Consensus 199 ~IVDEaDsIL 208 (762)
T TIGR03714 199 VIVDEVDSVL 208 (762)
T ss_pred EEEecHhhHh
Confidence 9999999986
No 84
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.68 E-value=1.7e-15 Score=130.92 Aligned_cols=143 Identities=43% Similarity=0.597 Sum_probs=107.6
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
++++.++||+|||.+++..+...... ....++||++|++.++.|+...+...... +..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~---------------------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~ 59 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS---------------------LKGGQVLVLAPTRELANQVAERLKELFGE-GIK 59 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc---------------------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcE
Confidence 78999999999999998887776532 12458999999999999999999888765 677
Q ss_pred EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCC
Q 012319 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNG 373 (466)
Q Consensus 294 v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~ 373 (466)
+..+.++..............+|+|+|++.+...+.... .....+.+|||||+|.+....+......+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~---- 132 (144)
T cd00046 60 VGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLP---- 132 (144)
T ss_pred EEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCC----
Confidence 777887776666555566789999999999988775432 3356788999999999875544333211222222
Q ss_pred CCCCCccccchhhhhcccCCCCceEEEEeeec
Q 012319 374 SNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 405 (466)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl 405 (466)
...+++++|||+
T Consensus 133 --------------------~~~~~i~~saTp 144 (144)
T cd00046 133 --------------------KDRQVLLLSATP 144 (144)
T ss_pred --------------------ccceEEEEeccC
Confidence 567899999995
No 85
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.68 E-value=7e-16 Score=161.83 Aligned_cols=213 Identities=22% Similarity=0.291 Sum_probs=149.3
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+||..+++-|.++|..++.++ |+++..|||.||++||.||++-. .| -+|||+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~--d~lvvmPTGgGKSlCyQiPAll~-------------------------~G-~TLVVS 64 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGK--DTLVVMPTGGGKSLCYQIPALLL-------------------------EG-LTLVVS 64 (590)
T ss_pred hCccccCCCHHHHHHHHHcCC--cEEEEccCCCCcchHhhhHHHhc-------------------------CC-CEEEEC
Confidence 789999999999999997665 99999999999999999998743 12 489999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEe
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 346 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lVi 346 (466)
|..+|...+++.+... |+.+..+.+..+..+....+. ...+||+-+|++|..-- ....+.-..+.++||
T Consensus 65 PLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~---f~~~L~~~~i~l~vI 137 (590)
T COG0514 65 PLISLMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPR---FLELLKRLPISLVAI 137 (590)
T ss_pred chHHHHHHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChH---HHHHHHhCCCceEEe
Confidence 9999999999999876 789999999887766544443 35799999999995421 011122456889999
Q ss_pred cccchhhccC--CHHH---HHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC--HHHHHHHhhcc
Q 012319 347 DEADRMIENG--HFRE---LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS--ADFRKKLKHGS 419 (466)
Q Consensus 347 DEad~ll~~g--~~~~---l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~--~~~~~~l~~~~ 419 (466)
|||||+.+|| |... +..+...++ ...++.||||-+.. .+....|....
T Consensus 138 DEAHCiSqWGhdFRP~Y~~lg~l~~~~~-------------------------~~p~~AlTATA~~~v~~DI~~~L~l~~ 192 (590)
T COG0514 138 DEAHCISQWGHDFRPDYRRLGRLRAGLP-------------------------NPPVLALTATATPRVRDDIREQLGLQD 192 (590)
T ss_pred chHHHHhhcCCccCHhHHHHHHHHhhCC-------------------------CCCEEEEeCCCChHHHHHHHHHhcCCC
Confidence 9999999998 5444 444455553 56899999998743 35555554322
Q ss_pred -------cccccccCcc----ccHHHH---HHHhCCcccceEEecCc---hhhHhhhhhhh
Q 012319 420 -------LKLKQSVNGL----NSIETL---SERAGMRANVAIVDLTN---VSVLANKLEES 463 (466)
Q Consensus 420 -------~~~~~~~~~~----~~~~~l---~~~~~~~~~~~iidl~~---~~~~~~~l~e~ 463 (466)
+..++..-.+ .....+ ..+......+-||++.+ .+.+++.|.+.
T Consensus 193 ~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~ 253 (590)
T COG0514 193 ANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN 253 (590)
T ss_pred cceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC
Confidence 1111111110 112222 22123334567888887 56777777665
No 86
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=4.3e-16 Score=169.50 Aligned_cols=191 Identities=19% Similarity=0.267 Sum_probs=144.8
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
.|...+..||..+.+.++.... ++++|||||+|||-..++-+|+.+-...... ........+++|++
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~E-nmLlCAPTGaGKTNVAvLtiLqel~~h~r~d------------gs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDE-NMLLCAPTGAGKTNVAVLTILQELGNHLRED------------GSVNLAPFKIVYIA 371 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcC-cEEEeccCCCCchHHHHHHHHHHHhcccccc------------cceecccceEEEEe
Confidence 4666799999999999977766 9999999999999999999999885432111 11122345899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccc
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 350 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad 350 (466)
|.++||..++..|.+....+++.|.-++|......+ -..+.+||||||+. ++.+.+........+-++++||||.|
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~---qieeTqVIV~TPEK-~DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE---QIEETQVIVTTPEK-WDIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhh---hhhcceeEEeccch-hhhhhcccCchhHHHHHHHHhhhhhh
Confidence 999999999999998888899999999998764332 12468999999999 67776543333335668899999999
Q ss_pred hhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHh
Q 012319 351 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 416 (466)
Q Consensus 351 ~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~ 416 (466)
.+- ..++..++.|.......... ....++++++||||||..+...-|.
T Consensus 448 LLh-DdRGpvLESIVaRt~r~ses-----------------~~e~~RlVGLSATLPNy~DV~~Fl~ 495 (1674)
T KOG0951|consen 448 LLH-DDRGPVLESIVARTFRRSES-----------------TEEGSRLVGLSATLPNYEDVASFLR 495 (1674)
T ss_pred hcc-cccchHHHHHHHHHHHHhhh-----------------cccCceeeeecccCCchhhhHHHhc
Confidence 664 55788888887655432111 1146899999999999888777543
No 87
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.61 E-value=1.2e-15 Score=159.03 Aligned_cols=161 Identities=22% Similarity=0.301 Sum_probs=133.2
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.+.|+|..+|-.+ .++. .|+|+|.|.+|||.++-..|...+... -||||..|-++
T Consensus 129 ~LDpFQ~~aI~Ci-dr~e-SVLVSAHTSAGKTVVAeYAIA~sLr~k-----------------------QRVIYTSPIKA 183 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI-DRGE-SVLVSAHTSAGKTVVAEYAIAMSLREK-----------------------QRVIYTSPIKA 183 (1041)
T ss_pred ccCchHhhhhhhh-cCCc-eEEEEeecCCCcchHHHHHHHHHHHhc-----------------------CeEEeeChhhh
Confidence 7899999999888 6665 999999999999999877777666432 28999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhc
Q 012319 275 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 354 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~ 354 (466)
|.+|-|++|..-++.. +.++|+.+. ...+..+|+|.+.|..+|-+|. --++.+.|||+||+|.|-|
T Consensus 184 LSNQKYREl~~EF~DV----GLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGS---EvmrEVaWVIFDEIHYMRD 249 (1041)
T KOG0948|consen 184 LSNQKYRELLEEFKDV----GLMTGDVTI-------NPDASCLVMTTEILRSMLYRGS---EVMREVAWVIFDEIHYMRD 249 (1041)
T ss_pred hcchhHHHHHHHhccc----ceeecceee-------CCCCceeeeHHHHHHHHHhccc---hHhheeeeEEeeeehhccc
Confidence 9999999998876644 445666543 3457799999999999996653 5578999999999999998
Q ss_pred cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhhc
Q 012319 355 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 418 (466)
Q Consensus 355 ~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~~ 418 (466)
...+-.++.-+-.|| ...+.+++|||+||+.+|+.|+...
T Consensus 250 kERGVVWEETIIllP------------------------~~vr~VFLSATiPNA~qFAeWI~~i 289 (1041)
T KOG0948|consen 250 KERGVVWEETIILLP------------------------DNVRFVFLSATIPNARQFAEWICHI 289 (1041)
T ss_pred cccceeeeeeEEecc------------------------ccceEEEEeccCCCHHHHHHHHHHH
Confidence 877777776666777 6789999999999999999999753
No 88
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.61 E-value=7.3e-15 Score=144.92 Aligned_cols=165 Identities=24% Similarity=0.386 Sum_probs=124.0
Q ss_pred HHHHHHHH-CCCCC-CcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCC
Q 012319 183 LLMKSIYR-LGFKE-PTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 260 (466)
Q Consensus 183 ~l~~~l~~-~g~~~-pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
.+..+|++ +|+.. -++.|.+++..+..++. ||+|+.|||+||++||.||.|-+-
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~-DVyVsMPTGaGKSLCyQLPaL~~~----------------------- 61 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKC-DVYVSMPTGAGKSLCYQLPALVHG----------------------- 61 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccC-cEEEeccCCCchhhhhhchHHHhC-----------------------
Confidence 34555555 56654 38999999999988877 999999999999999999988652
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh------cCCcEEEeCcHHHH-----HHHh
Q 012319 261 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK------ARPELVVGTPGRLW-----ELMS 329 (466)
Q Consensus 261 ~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~------~~~dIiV~TP~~L~-----~~l~ 329 (466)
+ ..||+.|..+|...+.++|..+ .+.+..+.+.++..+..+.+. ....|+..||+.-. .+|+
T Consensus 62 --g-ITIV~SPLiALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn 134 (641)
T KOG0352|consen 62 --G-ITIVISPLIALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN 134 (641)
T ss_pred --C-eEEEehHHHHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH
Confidence 2 6899999999999999999887 566666777777666555442 35679999999753 2332
Q ss_pred CCCCccccCCcccEEEecccchhhccCC-----HHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeee
Q 012319 330 GGEKHLVELHTLSFFVLDEADRMIENGH-----FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 404 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lViDEad~ll~~g~-----~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SAT 404 (466)
. ...-.-+.||||||||+...||+ +-.+..+...++ ...-|.++||
T Consensus 135 ~----L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~-------------------------~vpwvALTAT 185 (641)
T KOG0352|consen 135 G----LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP-------------------------GVPWVALTAT 185 (641)
T ss_pred H----HhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCC-------------------------CCceEEeecc
Confidence 1 12235678999999999999985 344555555553 4667889999
Q ss_pred cCC
Q 012319 405 IAL 407 (466)
Q Consensus 405 l~~ 407 (466)
.+.
T Consensus 186 A~~ 188 (641)
T KOG0352|consen 186 ANA 188 (641)
T ss_pred cCh
Confidence 863
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=1.4e-14 Score=153.25 Aligned_cols=102 Identities=22% Similarity=0.326 Sum_probs=78.9
Q ss_pred EEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE
Q 012319 216 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 295 (466)
Q Consensus 216 l~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~ 295 (466)
|+.|+||||||.+|+.. +..++.. +.++|||+|+++|+.|+++.|+..+ +..+.
T Consensus 1 LL~g~TGsGKT~v~l~~-i~~~l~~----------------------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~ 54 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQA-IEKVLAL----------------------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVA 54 (505)
T ss_pred CccCCCCCCHHHHHHHH-HHHHHHc----------------------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEE
Confidence 46899999999999654 4444321 3479999999999999999998764 56788
Q ss_pred EEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhh
Q 012319 296 PIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 296 ~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll 353 (466)
.++|+.+.......+ ...++|||||+..|. ..++++.+|||||+|...
T Consensus 55 vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~s 106 (505)
T TIGR00595 55 VLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSS 106 (505)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccc
Confidence 899998765543333 246799999998763 347889999999999765
No 90
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.60 E-value=6.7e-15 Score=166.33 Aligned_cols=152 Identities=22% Similarity=0.255 Sum_probs=99.4
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC----cHHHHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP----TRELALQ 278 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P----treLa~Q 278 (466)
.|..++.++. .+|++|+||||||. .+|.+-.-+ .. .....+++.-| +++||.|
T Consensus 81 ~Il~ai~~~~-VviI~GeTGSGKTT--qlPq~lle~------------------g~--g~~g~I~~TQPRRlAArsLA~R 137 (1294)
T PRK11131 81 DILEAIRDHQ-VVIVAGETGSGKTT--QLPKICLEL------------------GR--GVKGLIGHTQPRRLAARTVANR 137 (1294)
T ss_pred HHHHHHHhCC-eEEEECCCCCCHHH--HHHHHHHHc------------------CC--CCCCceeeCCCcHHHHHHHHHH
Confidence 4444446665 88999999999998 466332211 00 01112333335 5689999
Q ss_pred HHHHHHH-HHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccc-hhhccC
Q 012319 279 VTDHLKE-VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD-RMIENG 356 (466)
Q Consensus 279 v~~~l~~-l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad-~ll~~g 356 (466)
|++++.. ++..+|+.+ ........+++|+|+|||+|++++..+ ..|+.+++||||||| ++++++
T Consensus 138 VA~El~~~lG~~VGY~v----------rf~~~~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~D 203 (1294)
T PRK11131 138 IAEELETELGGCVGYKV----------RFNDQVSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNID 203 (1294)
T ss_pred HHHHHhhhhcceeceee----------cCccccCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccc
Confidence 9988875 444445443 111122457899999999999999654 449999999999999 688888
Q ss_pred CHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHh
Q 012319 357 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 416 (466)
Q Consensus 357 ~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~ 416 (466)
|... .|...++.. +..|+|+||||+. ...|.+.+.
T Consensus 204 fLLg--~Lk~lL~~r----------------------pdlKvILmSATid-~e~fs~~F~ 238 (1294)
T PRK11131 204 FILG--YLKELLPRR----------------------PDLKVIITSATID-PERFSRHFN 238 (1294)
T ss_pred hHHH--HHHHhhhcC----------------------CCceEEEeeCCCC-HHHHHHHcC
Confidence 8642 233333311 3579999999996 456666553
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1.6e-14 Score=157.20 Aligned_cols=132 Identities=23% Similarity=0.336 Sum_probs=107.6
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHH-HHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIM-QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 269 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil 269 (466)
+|. .|+++|.-..-.+ +.|+ |+.++||+|||+++++|++ +.+ . +..|-|+
T Consensus 78 lg~-~~~dvQlig~l~L-~~G~---Iaem~TGeGKTLva~lpa~l~aL-~-----------------------G~~V~Iv 128 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVL-HEGK---IAEMKTGEGKTLVATLPAYLNAL-T-----------------------GKGVHVV 128 (830)
T ss_pred hCC-CCCccHHHhhHHh-cCCc---hhhhhcCCCcHHHHHHHHHHHHH-c-----------------------CCCEEEE
Confidence 566 7899997766544 6663 8899999999999999996 554 1 2257799
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCCCCc---cccCCcccEEE
Q 012319 270 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEKH---LVELHTLSFFV 345 (466)
Q Consensus 270 ~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~~~---~~~l~~l~~lV 345 (466)
+||+.||.|.++.+..++..+++.+++++|+++...+.... .+||++|||++| .++|...... -..++.+.++|
T Consensus 129 Tpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aI 206 (830)
T PRK12904 129 TVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAI 206 (830)
T ss_pred ecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEE
Confidence 99999999999999999999999999999999987766554 489999999999 8888643211 12468899999
Q ss_pred ecccchhh
Q 012319 346 LDEADRMI 353 (466)
Q Consensus 346 iDEad~ll 353 (466)
|||||.||
T Consensus 207 vDEaDsiL 214 (830)
T PRK12904 207 VDEVDSIL 214 (830)
T ss_pred Eechhhhe
Confidence 99999976
No 92
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.55 E-value=5.9e-14 Score=128.12 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=100.6
Q ss_pred CCcHHHHHHHHHHHh------cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEE
Q 012319 195 EPTPIQKACIPAAAH------QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 268 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~------~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi 268 (466)
.|+++|.+++..++. ..+ .+++.+|||||||++++..+.... . ++||
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~-~~ll~~~tGsGKT~~~~~~~~~l~-------------------------~-~~l~ 55 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEER-RVLLNAPTGSGKTIIALALILELA-------------------------R-KVLI 55 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCS-EEEEEESTTSSHHHHHHHHHHHHH-------------------------C-EEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCC-CEEEEECCCCCcChhhhhhhhccc-------------------------c-ceeE
Confidence 578999999998874 134 999999999999999876444433 1 7999
Q ss_pred EeCcHHHHHHHHHHHHHHHcCCCcEEEE------------EECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCC---
Q 012319 269 ITPTRELALQVTDHLKEVAKGINVRVVP------------IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK--- 333 (466)
Q Consensus 269 l~PtreLa~Qv~~~l~~l~~~~~~~v~~------------~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~--- 333 (466)
++|+..|+.|..+.+..+.... ..+.. ..................+|+++|...|...+.....
T Consensus 56 ~~p~~~l~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~ 134 (184)
T PF04851_consen 56 VAPNISLLEQWYDEFDDFGSEK-YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDE 134 (184)
T ss_dssp EESSHHHHHHHHHHHHHHSTTS-EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH------
T ss_pred ecCHHHHHHHHHHHHHHhhhhh-hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccccccccc
Confidence 9999999999999996664422 11110 0011111122223345689999999999877643211
Q ss_pred -----ccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 334 -----HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 334 -----~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
.........+||+||||++....-| ..|+. . ....+|+||||+.
T Consensus 135 ~~~~~~~~~~~~~~~vI~DEaH~~~~~~~~---~~i~~-~-------------------------~~~~~l~lTATp~ 183 (184)
T PF04851_consen 135 SARRSYKLLKNKFDLVIIDEAHHYPSDSSY---REIIE-F-------------------------KAAFILGLTATPF 183 (184)
T ss_dssp ---GCHHGGGGSESEEEEETGGCTHHHHHH---HHHHH-S-------------------------SCCEEEEEESS-S
T ss_pred chhhhhhhccccCCEEEEehhhhcCCHHHH---HHHHc-C-------------------------CCCeEEEEEeCcc
Confidence 1123456789999999988643323 33333 2 4568999999974
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.55 E-value=3.6e-14 Score=157.14 Aligned_cols=166 Identities=18% Similarity=0.124 Sum_probs=111.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 193 FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 193 ~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
...|+|+|..+.... .+.+ .+|+.||||+|||.++++.+. .++.. ....+++|.+||
T Consensus 284 ~~~p~p~Q~~~~~~~-~~pg-l~ileApTGsGKTEAAL~~A~-~l~~~--------------------~~~~gi~~aLPT 340 (878)
T PRK09694 284 GYQPRQLQTLVDALP-LQPG-LTIIEAPTGSGKTEAALAYAW-RLIDQ--------------------GLADSIIFALPT 340 (878)
T ss_pred CCCChHHHHHHHhhc-cCCC-eEEEEeCCCCCHHHHHHHHHH-HHHHh--------------------CCCCeEEEECcH
Confidence 348999999875443 3333 899999999999999866554 33321 123479999999
Q ss_pred HHHHHHHHHHHHHHHcCC--CcEEEEEECCCCHHHHH---------------------HHHh---c---CCcEEEeCcHH
Q 012319 273 RELALQVTDHLKEVAKGI--NVRVVPIVGGMSTEKQE---------------------RLLK---A---RPELVVGTPGR 323 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~~~--~~~v~~~~gg~~~~~~~---------------------~~l~---~---~~dIiV~TP~~ 323 (466)
+++++|++.++..++... ...+...+|........ ..+. . -.+|+|||+..
T Consensus 341 ~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQ 420 (878)
T PRK09694 341 QATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQ 420 (878)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHH
Confidence 999999999998755422 34677777765432111 1111 1 26899999999
Q ss_pred HHHHHhCCCCccccCCc----ccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEE
Q 012319 324 LWELMSGGEKHLVELHT----LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTL 399 (466)
Q Consensus 324 L~~~l~~~~~~~~~l~~----l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~l 399 (466)
++..+-... ...++. -++|||||+|.+ +..+...+..++..+.. ....+|
T Consensus 421 lL~a~l~~k--h~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~-----------------------~g~~vI 474 (878)
T PRK09694 421 VLISVLPVK--HRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ-----------------------AGGSVI 474 (878)
T ss_pred HHHHHHccc--hHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHh-----------------------cCCcEE
Confidence 886543321 112222 258999999987 45555666777766542 346799
Q ss_pred EEeeecCC
Q 012319 400 VFSATIAL 407 (466)
Q Consensus 400 l~SATl~~ 407 (466)
+||||++.
T Consensus 475 llSATLP~ 482 (878)
T PRK09694 475 LLSATLPA 482 (878)
T ss_pred EEeCCCCH
Confidence 99999973
No 94
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.48 E-value=2.1e-13 Score=150.89 Aligned_cols=218 Identities=21% Similarity=0.249 Sum_probs=146.7
Q ss_pred HHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEE
Q 012319 188 IYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 267 (466)
Q Consensus 188 l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 267 (466)
...+|+..++|-|.++|..++. |+ |+++..|||.||++||.||++-. +...|
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~-Gk-d~fvlmpTG~GKSLCYQlPA~l~--------------------------~gitv 308 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLS-GK-DCFVLMPTGGGKSLCYQLPALLL--------------------------GGVTV 308 (941)
T ss_pred HHHhccccCChhHHHHHHHHHc-CC-ceEEEeecCCceeeEeecccccc--------------------------CCceE
Confidence 3458999999999999997754 45 99999999999999999998632 22689
Q ss_pred EEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH---h-c--CCcEEEeCcHHHHHHHhCCCCccccCCc-
Q 012319 268 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---K-A--RPELVVGTPGRLWELMSGGEKHLVELHT- 340 (466)
Q Consensus 268 il~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l---~-~--~~dIiV~TP~~L~~~l~~~~~~~~~l~~- 340 (466)
||.|.+.|+..+...|... ++..+.+.++.....+...+ . + .++|+..||+.+...-.- ......|..
T Consensus 309 VISPL~SLm~DQv~~L~~~----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l-~~~~~~L~~~ 383 (941)
T KOG0351|consen 309 VISPLISLMQDQVTHLSKK----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGL-LESLADLYAR 383 (941)
T ss_pred EeccHHHHHHHHHHhhhhc----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccch-hhHHHhccCC
Confidence 9999999999888888443 78888899988875443333 2 3 579999999998542110 111234555
Q ss_pred --ccEEEecccchhhccCC-----HHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC--CHHH
Q 012319 341 --LSFFVLDEADRMIENGH-----FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL--SADF 411 (466)
Q Consensus 341 --l~~lViDEad~ll~~g~-----~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~--~~~~ 411 (466)
+.++||||||+...||+ +.++..++...+ .+.+|.+|||.+. ..+.
T Consensus 384 ~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~-------------------------~vP~iALTATAT~~v~~DI 438 (941)
T KOG0351|consen 384 GLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP-------------------------GVPFIALTATATERVREDV 438 (941)
T ss_pred CeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC-------------------------CCCeEEeehhccHHHHHHH
Confidence 89999999999999985 344445554443 3689999999964 3456
Q ss_pred HHHHhhc----------ccccccccC--c-cccHHHHHHH--hCCcccceEEecCc---hhhHhhhhhhh
Q 012319 412 RKKLKHG----------SLKLKQSVN--G-LNSIETLSER--AGMRANVAIVDLTN---VSVLANKLEES 463 (466)
Q Consensus 412 ~~~l~~~----------~~~~~~~~~--~-~~~~~~l~~~--~~~~~~~~iidl~~---~~~~~~~l~e~ 463 (466)
+..|+-. .-+++..+. . .+....+... ......+.||+|.. .++++..|+..
T Consensus 439 i~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~ 508 (941)
T KOG0351|consen 439 IRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL 508 (941)
T ss_pred HHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh
Confidence 6665421 111111111 1 2223332222 22224688999887 35666666543
No 95
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=2.2e-13 Score=148.15 Aligned_cols=133 Identities=18% Similarity=0.232 Sum_probs=105.0
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. .|+++|.-.--.+ +.|+ |+.++||.|||++|.+|++.+.+. +..|.||+
T Consensus 79 lgm-~~ydVQliGgl~L-~~G~---IaEm~TGEGKTL~a~lp~~l~al~-----------------------g~~VhIvT 130 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVL-DSNR---IAEMRTGEGKTLTATLPAYLNALT-----------------------GKGVHVIT 130 (908)
T ss_pred hCC-CcCchHHhcchHh-cCCc---cccccCCCCchHHHHHHHHHHHhc-----------------------CCCEEEEe
Confidence 455 6888886555444 5554 789999999999999999877652 33599999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCCCCc---cccCCcccEEEe
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEKH---LVELHTLSFFVL 346 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~~~---~~~l~~l~~lVi 346 (466)
|++.||.|.++.+..++..+|+.+.++.++.+.... .-.-.+||++|||+.| .++|...... -...+.+.++||
T Consensus 131 ~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIv 208 (908)
T PRK13107 131 VNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALI 208 (908)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeee
Confidence 999999999999999999999999999999886332 2223789999999999 8887543110 112478899999
Q ss_pred cccchhh
Q 012319 347 DEADRMI 353 (466)
Q Consensus 347 DEad~ll 353 (466)
||||.||
T Consensus 209 DEvDsiL 215 (908)
T PRK13107 209 DEVDSIL 215 (908)
T ss_pred cchhhhc
Confidence 9999876
No 96
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.3e-13 Score=144.74 Aligned_cols=158 Identities=21% Similarity=0.242 Sum_probs=105.3
Q ss_pred HHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH-----HH
Q 012319 202 ACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE-----LA 276 (466)
Q Consensus 202 ~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre-----La 276 (466)
+-|..+++.+. -|||||.||||||...-..+.+..+.. .....+.+|-|+..|. +|
T Consensus 262 q~IMEaIn~n~-vvIIcGeTGsGKTTQvPQFLYEAGf~s------------------~~~~~~gmIGITqPRRVAaiamA 322 (1172)
T KOG0926|consen 262 QRIMEAINENP-VVIICGETGSGKTTQVPQFLYEAGFAS------------------EQSSSPGMIGITQPRRVAAIAMA 322 (1172)
T ss_pred HHHHHHhhcCC-eEEEecCCCCCccccchHHHHHcccCC------------------ccCCCCCeeeecCchHHHHHHHH
Confidence 33445557765 889999999999987655555554322 1222355777765543 44
Q ss_pred HHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch-----
Q 012319 277 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR----- 351 (466)
Q Consensus 277 ~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~----- 351 (466)
..|+.+|..+....+++| ++...+.....|.++|.|.|++-|.++ +.|+.++.|||||||.
T Consensus 323 kRVa~EL~~~~~eVsYqI----------Rfd~ti~e~T~IkFMTDGVLLrEi~~D----flL~kYSvIIlDEAHERSvnT 388 (1172)
T KOG0926|consen 323 KRVAFELGVLGSEVSYQI----------RFDGTIGEDTSIKFMTDGVLLREIEND----FLLTKYSVIILDEAHERSVNT 388 (1172)
T ss_pred HHHHHHhccCccceeEEE----------EeccccCCCceeEEecchHHHHHHHHh----HhhhhceeEEechhhhccchH
Confidence 455555555444444444 223334556889999999999999876 7799999999999995
Q ss_pred -hhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHH
Q 012319 352 -MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 412 (466)
Q Consensus 352 -ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~ 412 (466)
+| .|+...+..|...+...+ .+-++...|+|||||. ..+|.
T Consensus 389 DIL-iGmLSRiV~LR~k~~ke~------------------~~~kpLKLIIMSATLR-VsDFt 430 (1172)
T KOG0926|consen 389 DIL-IGMLSRIVPLRQKYYKEQ------------------CQIKPLKLIIMSATLR-VSDFT 430 (1172)
T ss_pred HHH-HHHHHHHHHHHHHHhhhh------------------cccCceeEEEEeeeEE-ecccc
Confidence 33 566677777766655322 1226889999999997 33454
No 97
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.45 E-value=2.7e-13 Score=145.08 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=124.9
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.|..||.+.+..+ ..+. .+++.|||.+|||++- .-+++.+++..+ .--+|+++||++
T Consensus 511 ~Pd~WQ~elLDsv-Dr~e-SavIVAPTSaGKTfis-fY~iEKVLResD--------------------~~VVIyvaPtKa 567 (1330)
T KOG0949|consen 511 CPDEWQRELLDSV-DRNE-SAVIVAPTSAGKTFIS-FYAIEKVLRESD--------------------SDVVIYVAPTKA 567 (1330)
T ss_pred CCcHHHHHHhhhh-hccc-ceEEEeeccCCceecc-HHHHHHHHhhcC--------------------CCEEEEecchHH
Confidence 6899999999888 6666 9999999999999873 224566655421 236899999999
Q ss_pred HHHHHHHHHHHHHcCCC-cEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhh
Q 012319 275 LALQVTDHLKEVAKGIN-VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll 353 (466)
|+.|+...+...+.... .+...+.|....+-+.. --+|+|+|+-|+-|-.+|.....+......++++|+||+|.+.
T Consensus 568 LVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG 645 (1330)
T KOG0949|consen 568 LVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIG 645 (1330)
T ss_pred HhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcc
Confidence 99999888877663322 23333444443322221 2268999999999988886532344567899999999999987
Q ss_pred ccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHh
Q 012319 354 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 416 (466)
Q Consensus 354 ~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~ 416 (466)
.+...--+++++..+ ++.+|++|||++|+..|.+|++
T Consensus 646 ~~ed~l~~Eqll~li--------------------------~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 646 NEEDGLLWEQLLLLI--------------------------PCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred ccccchHHHHHHHhc--------------------------CCCeeEEecccCCHHHHHHHHH
Confidence 554444445555444 4789999999999999999998
No 98
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.45 E-value=4.3e-13 Score=152.32 Aligned_cols=168 Identities=21% Similarity=0.220 Sum_probs=106.7
Q ss_pred CCCCCCcHHHH--HHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEE
Q 012319 191 LGFKEPTPIQK--ACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 268 (466)
Q Consensus 191 ~g~~~pt~iQ~--~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi 268 (466)
..|...-||.. ..|...+..+. .+|++|+||||||.. +|.+-.- . . .....++++
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~-vvii~g~TGSGKTTq--lPq~lle--~----------------~--~~~~~~I~~ 116 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQ-VVIIAGETGSGKTTQ--LPKICLE--L----------------G--RGSHGLIGH 116 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-eEEEeCCCCCCcHHH--HHHHHHH--c----------------C--CCCCceEec
Confidence 45655566654 34555556665 889999999999984 4533221 1 0 011224555
Q ss_pred EeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecc
Q 012319 269 ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 348 (466)
Q Consensus 269 l~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDE 348 (466)
.-|.|-.|..++..+.... +..++..+|..- .+.......+.|+|+|||+|++.+..+ ..|+.+++|||||
T Consensus 117 tQPRRlAA~svA~RvA~el---g~~lG~~VGY~v--R~~~~~s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDE 187 (1283)
T TIGR01967 117 TQPRRLAARTVAQRIAEEL---GTPLGEKVGYKV--RFHDQVSSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDE 187 (1283)
T ss_pred CCccHHHHHHHHHHHHHHh---CCCcceEEeeEE--cCCcccCCCceeeeccccHHHHHhhhC----cccccCcEEEEcC
Confidence 5677766666666655443 333333333210 011113456899999999999998654 3589999999999
Q ss_pred cc-hhhccCCHHH-HHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHh
Q 012319 349 AD-RMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 416 (466)
Q Consensus 349 ad-~ll~~g~~~~-l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~ 416 (466)
|| ++++.++.-. +..++... +..|+|+||||+. ...|.+.+.
T Consensus 188 aHERsL~~D~LL~lLk~il~~r-------------------------pdLKlIlmSATld-~~~fa~~F~ 231 (1283)
T TIGR01967 188 AHERSLNIDFLLGYLKQLLPRR-------------------------PDLKIIITSATID-PERFSRHFN 231 (1283)
T ss_pred cchhhccchhHHHHHHHHHhhC-------------------------CCCeEEEEeCCcC-HHHHHHHhc
Confidence 99 6888877643 45554332 3579999999996 456777764
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.42 E-value=1.8e-12 Score=147.46 Aligned_cols=136 Identities=22% Similarity=0.244 Sum_probs=89.8
Q ss_pred CCCcHHHHHHHHHHHh---cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 194 KEPTPIQKACIPAAAH---QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~---~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
..++++|..||..+.. .++..+|++++||||||+++ +.++..+++. ....++|||+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~--------------------~~~~rVLfLv 470 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKA--------------------KRFRRILFLV 470 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhc--------------------CccCeEEEEe
Confidence 3589999999987752 22238999999999999885 4455555432 1134899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCC--CccccCCcccEEEecc
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE--KHLVELHTLSFFVLDE 348 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~--~~~~~l~~l~~lViDE 348 (466)
|+++|+.|..+.|..+.......+..+++...... ........|+|+|...|...+.... .....+..+++|||||
T Consensus 471 DR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDE 548 (1123)
T PRK11448 471 DRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDE 548 (1123)
T ss_pred cHHHHHHHHHHHHHhcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEEC
Confidence 99999999999998863221211211222111111 1123457899999999987653221 1124567888999999
Q ss_pred cchh
Q 012319 349 ADRM 352 (466)
Q Consensus 349 ad~l 352 (466)
||+-
T Consensus 549 aHRs 552 (1123)
T PRK11448 549 AHRG 552 (1123)
T ss_pred CCCC
Confidence 9985
No 100
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=2e-12 Score=139.98 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=104.0
Q ss_pred CCcHHHHHHHHHHHhcCC-ccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 012319 195 EPTPIQKACIPAAAHQGK-VDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 273 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~-~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 273 (466)
.++|+|.+++..++.++. ...++++|||+|||++.+..+ ..+ ..++|||||+.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l-------------------------~k~tLILvps~ 308 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV-------------------------KKSCLVLCTSA 308 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh-------------------------CCCEEEEeCcH
Confidence 689999999999875442 267899999999999876433 222 12599999999
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCC-----ccccCCcccEEEecc
Q 012319 274 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK-----HLVELHTLSFFVLDE 348 (466)
Q Consensus 274 eLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~-----~~~~l~~l~~lViDE 348 (466)
.|+.|..+.|..++......+..++|+.... ......|+|+|+..+.....+... ..+.-....+||+||
T Consensus 309 ~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DE 383 (732)
T TIGR00603 309 VSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDE 383 (732)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEc
Confidence 9999999999988644445666666653221 123468999999877533211100 011124567999999
Q ss_pred cchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 349 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 349 ad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
||++-. .....++..+. ....|++|||+-
T Consensus 384 vH~lpA----~~fr~il~~l~-------------------------a~~RLGLTATP~ 412 (732)
T TIGR00603 384 VHVVPA----AMFRRVLTIVQ-------------------------AHCKLGLTATLV 412 (732)
T ss_pred cccccH----HHHHHHHHhcC-------------------------cCcEEEEeecCc
Confidence 999853 33445665554 234699999995
No 101
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.41 E-value=4.6e-12 Score=142.46 Aligned_cols=97 Identities=26% Similarity=0.319 Sum_probs=74.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHH---HHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 012319 181 HPLLMKSIYRLGFKEPTPIQKACIPA---AAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 257 (466)
Q Consensus 181 ~~~l~~~l~~~g~~~pt~iQ~~~i~~---~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 257 (466)
++.+...+...||. ++|.|.+.+.. .+..++ ++++.||||+|||++|++|++....
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~-~~~~eA~TG~GKT~ayLlp~~~~~~------------------- 290 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSE-KSLIEAPTGTGKTLGYLLPALYYAI------------------- 290 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCC-cEEEECCCCCchhHHHHHHHHHHhc-------------------
Confidence 44667777778885 89999986653 334555 9999999999999999999988663
Q ss_pred cCCCCCeEEEEEeCcHHHHHHHHH-HHHHHHcCCC--cEEEEEECCCC
Q 012319 258 YAPKGHLRALIITPTRELALQVTD-HLKEVAKGIN--VRVVPIVGGMS 302 (466)
Q Consensus 258 ~~~~~~~~vLil~PtreLa~Qv~~-~l~~l~~~~~--~~v~~~~gg~~ 302 (466)
.+.++||.+||++|..|+.. .+..+.+.++ ++++.+.|+.+
T Consensus 291 ----~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ 334 (850)
T TIGR01407 291 ----TEKPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSN 334 (850)
T ss_pred ----CCCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchh
Confidence 12379999999999999865 5666655444 77887877754
No 102
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.40 E-value=1.5e-12 Score=135.83 Aligned_cols=122 Identities=22% Similarity=0.248 Sum_probs=85.2
Q ss_pred CCcHHHHHHHHHHHhc---CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAAAHQ---GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~---~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.|+++|.+++..+... .+ ..++++|||+|||++++..+ ..+ +..+|||||
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~-~gvivlpTGaGKT~va~~~~-~~~-------------------------~~~~Lvlv~ 88 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTER-RGVIVLPTGAGKTVVAAEAI-AEL-------------------------KRSTLVLVP 88 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCC-ceEEEeCCCCCHHHHHHHHH-HHh-------------------------cCCEEEEEC
Confidence 6999999999999773 44 89999999999998875533 333 123999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHH--HhCCCCccccCCcccEEEeccc
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL--MSGGEKHLVELHTLSFFVLDEA 349 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~--l~~~~~~~~~l~~l~~lViDEa 349 (466)
|++|+.|.++.+....... -.++. +||..... .. ..|.|+|-..+... +. .+......+||||||
T Consensus 89 ~~~L~~Qw~~~~~~~~~~~-~~~g~-~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~-----~~~~~~~~liI~DE~ 155 (442)
T COG1061 89 TKELLDQWAEALKKFLLLN-DEIGI-YGGGEKEL-----EP-AKVTVATVQTLARRQLLD-----EFLGNEFGLIIFDEV 155 (442)
T ss_pred cHHHHHHHHHHHHHhcCCc-cccce-ecCceecc-----CC-CcEEEEEhHHHhhhhhhh-----hhcccccCEEEEEcc
Confidence 9999999987776654321 12333 33322211 11 46999998888663 21 133347899999999
Q ss_pred chhhccC
Q 012319 350 DRMIENG 356 (466)
Q Consensus 350 d~ll~~g 356 (466)
|++....
T Consensus 156 Hh~~a~~ 162 (442)
T COG1061 156 HHLPAPS 162 (442)
T ss_pred ccCCcHH
Confidence 9997443
No 103
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.39 E-value=4.7e-12 Score=140.99 Aligned_cols=90 Identities=24% Similarity=0.402 Sum_probs=71.5
Q ss_pred HHHCCCCCCcHHHHH---HHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCe
Q 012319 188 IYRLGFKEPTPIQKA---CIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 264 (466)
Q Consensus 188 l~~~g~~~pt~iQ~~---~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (466)
+.-.|| .+++-|.+ ++...+..+. .+++.|+||+|||++|++|++... .+.
T Consensus 239 ~~~~~~-e~R~~Q~~ma~~V~~~l~~~~-~~~~eA~tGtGKT~ayllp~l~~~------------------------~~~ 292 (820)
T PRK07246 239 IALLGL-EERPKQESFAKLVGEDFHDGP-ASFIEAQTGIGKTYGYLLPLLAQS------------------------DQR 292 (820)
T ss_pred hccCCC-ccCHHHHHHHHHHHHHHhCCC-cEEEECCCCCcHHHHHHHHHHHhc------------------------CCC
Confidence 334566 68999988 4555556666 899999999999999999988653 135
Q ss_pred EEEEEeCcHHHHHHH-HHHHHHHHcCCCcEEEEEECCCCH
Q 012319 265 RALIITPTRELALQV-TDHLKEVAKGINVRVVPIVGGMST 303 (466)
Q Consensus 265 ~vLil~PtreLa~Qv-~~~l~~l~~~~~~~v~~~~gg~~~ 303 (466)
++||++|||+|+.|+ .+.+..+.+.+++.+..+.|+.++
T Consensus 293 ~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~~~kg~~~y 332 (820)
T PRK07246 293 QIIVSVPTKILQDQIMAEEVKAIQEVFHIDCHSLKGPQNY 332 (820)
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHHHhcCCcEEEEECCccc
Confidence 799999999999999 467888877778888888888653
No 104
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.36 E-value=1.4e-11 Score=129.63 Aligned_cols=143 Identities=25% Similarity=0.378 Sum_probs=112.1
Q ss_pred CCCHHHHHH-HHHCCCCCCcHHHHHHHHHHHhc----CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 012319 179 RLHPLLMKS-IYRLGFKEPTPIQKACIPAAAHQ----GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 253 (466)
Q Consensus 179 ~l~~~l~~~-l~~~g~~~pt~iQ~~~i~~~l~~----~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 253 (466)
.....+++. +..+.| .+|.-|+.++..|... ...+=++++--|||||++.++.++..+-
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~--------------- 309 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE--------------- 309 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---------------
Confidence 344454444 466877 8999999999998642 1123488999999999999999998873
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHh
Q 012319 254 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMS 329 (466)
Q Consensus 254 ~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~ 329 (466)
.|.++..++||--||.|-+..+.+++..++++|..++|..........+ .+..+||||| ..++.
T Consensus 310 --------~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT----HALiQ 377 (677)
T COG1200 310 --------AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT----HALIQ 377 (677)
T ss_pred --------cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc----chhhh
Confidence 2568999999999999999999999999999999999988765443333 3458999999 44443
Q ss_pred CCCCccccCCcccEEEecccchhh
Q 012319 330 GGEKHLVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lViDEad~ll 353 (466)
. ...++++.++|+||=|+..
T Consensus 378 d----~V~F~~LgLVIiDEQHRFG 397 (677)
T COG1200 378 D----KVEFHNLGLVIIDEQHRFG 397 (677)
T ss_pred c----ceeecceeEEEEecccccc
Confidence 3 2678999999999999864
No 105
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.35 E-value=1.9e-12 Score=139.18 Aligned_cols=191 Identities=20% Similarity=0.230 Sum_probs=148.1
Q ss_pred CCHHH-HHHHHHCCCCCCcHHHHHHH--HHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 012319 180 LHPLL-MKSIYRLGFKEPTPIQKACI--PAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAE 256 (466)
Q Consensus 180 l~~~l-~~~l~~~g~~~pt~iQ~~~i--~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~ 256 (466)
+++.+ .-.....|...++.||.+|+ |.++ +++ ++|+.+||+.|||++.-+-++..++..+.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~-e~~-nliys~Pts~gktlvaeilml~~~l~~rr-------------- 270 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLL-ERK-NLIYSLPTSAGKTLVAEILMLREVLCRRR-------------- 270 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhh-ccc-ceEEeCCCccchHHHHHHHHHHHHHHHhh--------------
Confidence 33443 33445588889999999987 6675 566 99999999999999999988888876532
Q ss_pred hcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccc
Q 012319 257 KYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 336 (466)
Q Consensus 257 ~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~ 336 (466)
.++.++|...-+..-...+..++...|+.+-..+|....... ...-++-|||-++-..+++.. ...-
T Consensus 271 --------~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~l-ie~g 337 (1008)
T KOG0950|consen 271 --------NVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSL-IEQG 337 (1008)
T ss_pred --------ceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHH-HhcC
Confidence 589999999988888888888888889998887776654322 234689999999977666432 1113
Q ss_pred cCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHh
Q 012319 337 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 416 (466)
Q Consensus 337 ~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~ 416 (466)
.+..+.+|||||.|.+.|.+....++.++..+-..+.. ...|+|+||||++|...+.+||.
T Consensus 338 ~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~-------------------~~~~iIGMSATi~N~~lL~~~L~ 398 (1008)
T KOG0950|consen 338 RLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE-------------------TSVQIIGMSATIPNNSLLQDWLD 398 (1008)
T ss_pred CccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc-------------------cceeEeeeecccCChHHHHHHhh
Confidence 47789999999999999999999999988765432211 22789999999999999999997
Q ss_pred hc
Q 012319 417 HG 418 (466)
Q Consensus 417 ~~ 418 (466)
..
T Consensus 399 A~ 400 (1008)
T KOG0950|consen 399 AF 400 (1008)
T ss_pred hh
Confidence 54
No 106
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.33 E-value=1.7e-11 Score=131.44 Aligned_cols=72 Identities=28% Similarity=0.245 Sum_probs=56.9
Q ss_pred HhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHH
Q 012319 208 AHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 287 (466)
Q Consensus 208 l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~ 287 (466)
+.+++ .+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+++.+..+.
T Consensus 13 l~~~~-~lliEA~TGtGKTlAYLlpal~~~~~~---------------------~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 13 LRQKR-IGMLEASTGVGKTLAMIMAALTMLKER---------------------PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HhcCC-eEEEEcCCCCcHHHHHHHHHHHHHHhc---------------------cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 35565 899999999999999999999887421 13589999999999999999988887
Q ss_pred -cC--CCcEEEEEECCC
Q 012319 288 -KG--INVRVVPIVGGM 301 (466)
Q Consensus 288 -~~--~~~~v~~~~gg~ 301 (466)
+. ..+++..+.|+.
T Consensus 71 ~~~l~~~i~~~~lkGr~ 87 (636)
T TIGR03117 71 AEGLAGPVQAGFFPGSQ 87 (636)
T ss_pred HhhcCCCeeEEEEECCc
Confidence 32 355666655554
No 107
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.29 E-value=1.2e-10 Score=128.99 Aligned_cols=166 Identities=24% Similarity=0.310 Sum_probs=132.7
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHHHHh----cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 012319 180 LHPLLMKSIYR-LGFKEPTPIQKACIPAAAH----QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 254 (466)
Q Consensus 180 l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~----~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 254 (466)
.+......+.+ ++| .-||=|..||..+.. ....|=|+||--|-|||.+++=.++-.++
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~---------------- 641 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM---------------- 641 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc----------------
Confidence 34445555444 666 569999999988853 33357899999999999998877777663
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhC
Q 012319 255 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 255 ~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~ 330 (466)
.|.+|.|||||.-||.|-++.|+.-+.+++++|..+.--.+.+++...+. +..|||||| ..+|+.
T Consensus 642 -------~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT----HrLL~k 710 (1139)
T COG1197 642 -------DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT----HRLLSK 710 (1139)
T ss_pred -------CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec----hHhhCC
Confidence 35799999999999999999999999999999999888777777766554 478999999 777765
Q ss_pred CCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
+ +.+.++.+|||||-|+.. -.+.+.+..+. ...-++-||||.-
T Consensus 711 d----v~FkdLGLlIIDEEqRFG-Vk~KEkLK~Lr----------------------------~~VDvLTLSATPI 753 (1139)
T COG1197 711 D----VKFKDLGLLIIDEEQRFG-VKHKEKLKELR----------------------------ANVDVLTLSATPI 753 (1139)
T ss_pred C----cEEecCCeEEEechhhcC-ccHHHHHHHHh----------------------------ccCcEEEeeCCCC
Confidence 4 778999999999999975 66677776665 4456888999974
No 108
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.28 E-value=5e-11 Score=116.41 Aligned_cols=174 Identities=21% Similarity=0.263 Sum_probs=121.7
Q ss_pred cCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 012319 177 ELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 255 (466)
Q Consensus 177 ~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~ 255 (466)
+++.+....+-|.. +....++|.|..+|...+.+. ++++..|||.||++||.||+|-.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~e--d~~lil~tgggkslcyqlpal~a------------------- 133 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGE--DAFLILPTGGGKSLCYQLPALCA------------------- 133 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccC--ceEEEEeCCCccchhhhhhHHhc-------------------
Confidence 34444454444443 456688999999999987655 99999999999999999998753
Q ss_pred hhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH---h---cCCcEEEeCcHHHHH---
Q 012319 256 EKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---K---ARPELVVGTPGRLWE--- 326 (466)
Q Consensus 256 ~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l---~---~~~dIiV~TP~~L~~--- 326 (466)
...+|||+|...|+..+.-.++.+ ++....+....+.+...+.- - ....+|..||+.|..
T Consensus 134 -------dg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~ 202 (695)
T KOG0353|consen 134 -------DGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKK 202 (695)
T ss_pred -------CCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHH
Confidence 125899999999998887777776 66666666666654432221 1 246799999999843
Q ss_pred HHhCCCCccccCCcccEEEecccchhhccCC-----HHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEE
Q 012319 327 LMSGGEKHLVELHTLSFFVLDEADRMIENGH-----FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 401 (466)
Q Consensus 327 ~l~~~~~~~~~l~~l~~lViDEad~ll~~g~-----~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~ 401 (466)
+|+.. .+......+.++.|||+|+...||+ +..+.-+-..+ +...+|++
T Consensus 203 ~mnkl-eka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf-------------------------~~~~iigl 256 (695)
T KOG0353|consen 203 FMNKL-EKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQF-------------------------KGAPIIGL 256 (695)
T ss_pred HHHHH-HHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhC-------------------------CCCceeee
Confidence 23211 1224456678999999999988885 22222222333 56789999
Q ss_pred eeecCCC
Q 012319 402 SATIALS 408 (466)
Q Consensus 402 SATl~~~ 408 (466)
+||.++.
T Consensus 257 tatatn~ 263 (695)
T KOG0353|consen 257 TATATNH 263 (695)
T ss_pred ehhhhcc
Confidence 9999864
No 109
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.26 E-value=5.1e-11 Score=130.40 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=97.2
Q ss_pred CcHHHHHHHHHHHhc--------CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEE
Q 012319 196 PTPIQKACIPAAAHQ--------GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 267 (466)
Q Consensus 196 pt~iQ~~~i~~~l~~--------~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 267 (466)
|...|..++..++.. ++...+++.+||||||++.+..+. .++.. ...+++|
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~-~l~~~--------------------~~~~~vl 297 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAAR-KALEL--------------------LKNPKVF 297 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHH-HHHhh--------------------cCCCeEE
Confidence 678898888776432 122789999999999988755443 33321 2356899
Q ss_pred EEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh-cCCcEEEeCcHHHHHHHhCCCCccccCCcc-cEEE
Q 012319 268 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHTL-SFFV 345 (466)
Q Consensus 268 il~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~-~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l-~~lV 345 (466)
||+|+++|..|+.+.|..+.... ..+..+.......+. ....|+|+|...|...+...... .....- -+||
T Consensus 298 ~lvdR~~L~~Q~~~~f~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~-~~~~~~~~lvI 370 (667)
T TIGR00348 298 FVVDRRELDYQLMKEFQSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEK-FPVDRKEVVVI 370 (667)
T ss_pred EEECcHHHHHHHHHHHHhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhc-cCCCCCCEEEE
Confidence 99999999999999999875321 111122222333333 24689999999997644321100 111111 2899
Q ss_pred ecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 346 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 346 iDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
+||||+.....+ ...+...++ ....|+||||.-
T Consensus 371 vDEaHrs~~~~~---~~~l~~~~p-------------------------~a~~lGfTaTP~ 403 (667)
T TIGR00348 371 FDEAHRSQYGEL---AKNLKKALK-------------------------NASFFGFTGTPI 403 (667)
T ss_pred EEcCccccchHH---HHHHHhhCC-------------------------CCcEEEEeCCCc
Confidence 999998752222 222334554 467999999985
No 110
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.26 E-value=3.2e-11 Score=132.26 Aligned_cols=155 Identities=23% Similarity=0.258 Sum_probs=99.2
Q ss_pred HHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe-CcHHHHHHHHHH
Q 012319 204 IPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT-PTRELALQVTDH 282 (466)
Q Consensus 204 i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~-PtreLa~Qv~~~ 282 (466)
|-.++..+. .+|++|+||||||...-..+++..+ .+...|+++ |.|-.|.-++..
T Consensus 58 i~~ai~~~~-vvii~getGsGKTTqlP~~lle~g~-----------------------~~~g~I~~tQPRRlAArsvA~R 113 (845)
T COG1643 58 ILKAIEQNQ-VVIIVGETGSGKTTQLPQFLLEEGL-----------------------GIAGKIGCTQPRRLAARSVAER 113 (845)
T ss_pred HHHHHHhCC-EEEEeCCCCCChHHHHHHHHHhhhc-----------------------ccCCeEEecCchHHHHHHHHHH
Confidence 333445555 8999999999999887776766553 122345555 555444455555
Q ss_pred HHHHHc-CCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch-hhccCC-HH
Q 012319 283 LKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MIENGH-FR 359 (466)
Q Consensus 283 l~~l~~-~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~-ll~~g~-~~ 359 (466)
+..-.. ..|-.|+.-+ .+.........|-|+|.|.|++.+.++ ..|+.+++|||||||. -++..+ ..
T Consensus 114 vAeel~~~~G~~VGY~i------Rfe~~~s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDilLg 183 (845)
T COG1643 114 VAEELGEKLGETVGYSI------RFESKVSPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDILLG 183 (845)
T ss_pred HHHHhCCCcCceeeEEE------EeeccCCCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHHHHH
Confidence 544332 2222222222 223334556889999999999999765 5699999999999994 443322 12
Q ss_pred HHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhh
Q 012319 360 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 417 (466)
Q Consensus 360 ~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~ 417 (466)
.+..++..++ ....+|+||||+. ...|...+..
T Consensus 184 llk~~~~~rr------------------------~DLKiIimSATld-~~rfs~~f~~ 216 (845)
T COG1643 184 LLKDLLARRR------------------------DDLKLIIMSATLD-AERFSAYFGN 216 (845)
T ss_pred HHHHHHhhcC------------------------CCceEEEEecccC-HHHHHHHcCC
Confidence 2334444443 4589999999996 6678777763
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.23 E-value=1.2e-10 Score=126.15 Aligned_cols=186 Identities=24% Similarity=0.367 Sum_probs=129.7
Q ss_pred CCCcHHHHHHHHHHHhc--CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 194 KEPTPIQKACIPAAAHQ--GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~~--~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
..+++-|..++..+... +....++.+-||||||.+| +.++...+.. |..||||+|
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvY-l~~i~~~L~~----------------------GkqvLvLVP 253 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVY-LEAIAKVLAQ----------------------GKQVLVLVP 253 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHH-HHHHHHHHHc----------------------CCEEEEEec
Confidence 36788999999888654 2337899999999999999 4555555432 457999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEec
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 347 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViD 347 (466)
-..|-.|+.+.|+..+ +..+..++++.+..+....| .+...|+|||-..| +..|.++.+||||
T Consensus 254 EI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl----------F~Pf~~LGLIIvD 320 (730)
T COG1198 254 EIALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL----------FLPFKNLGLIIVD 320 (730)
T ss_pred cccchHHHHHHHHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----------cCchhhccEEEEe
Confidence 9999999999999886 57888999998876554444 35789999997665 2568899999999
Q ss_pred ccchhh---ccC---CHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhhcccc
Q 012319 348 EADRMI---ENG---HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK 421 (466)
Q Consensus 348 Ead~ll---~~g---~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~~~~~ 421 (466)
|-|--. +.+ +..+|-..+.+. ...++|+-|||.+ .+-......+.+.
T Consensus 321 EEHD~sYKq~~~prYhARdvA~~Ra~~-------------------------~~~pvvLgSATPS--LES~~~~~~g~y~ 373 (730)
T COG1198 321 EEHDSSYKQEDGPRYHARDVAVLRAKK-------------------------ENAPVVLGSATPS--LESYANAESGKYK 373 (730)
T ss_pred ccccccccCCcCCCcCHHHHHHHHHHH-------------------------hCCCEEEecCCCC--HHHHHhhhcCceE
Confidence 999422 011 233333333333 5789999999996 3333333333333
Q ss_pred cccccCccccHHHHHHHhC--CcccceEEecCc
Q 012319 422 LKQSVNGLNSIETLSERAG--MRANVAIVDLTN 452 (466)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~--~~~~~~iidl~~ 452 (466)
.-.|..|++ --++..+||+..
T Consensus 374 ----------~~~L~~R~~~a~~p~v~iiDmr~ 396 (730)
T COG1198 374 ----------LLRLTNRAGRARLPRVEIIDMRK 396 (730)
T ss_pred ----------EEEccccccccCCCcceEEeccc
Confidence 223444555 114677788776
No 112
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.12 E-value=1.3e-09 Score=118.29 Aligned_cols=143 Identities=26% Similarity=0.403 Sum_probs=100.4
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
.|| .|+..|+--...++.+. ..-+.||||.|||. |.+.+--.+.. .+.+++||+
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~--SFaiiAPTGvGKTT-fg~~~sl~~a~----------------------kgkr~yii~ 132 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGK--SFAIIAPTGVGKTT-FGLLMSLYLAK----------------------KGKRVYIIV 132 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCC--ceEEEcCCCCchhH-HHHHHHHHHHh----------------------cCCeEEEEe
Confidence 455 89999998888886665 88999999999994 43322222211 135899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCC-cEEEE-EECCCCHHHHH----HHHhcCCcEEEeCcHHHHHHHhCCCCccccCC--ccc
Q 012319 271 PTRELALQVTDHLKEVAKGIN-VRVVP-IVGGMSTEKQE----RLLKARPELVVGTPGRLWELMSGGEKHLVELH--TLS 342 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~-~~v~~-~~gg~~~~~~~----~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~--~l~ 342 (466)
||+.|+.|+++.+.+++...+ +.+.. +|+..+..... +.-.+..||+|+|..-|...+. .|+ +++
T Consensus 133 PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e-------~L~~~kFd 205 (1187)
T COG1110 133 PTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE-------ELSKLKFD 205 (1187)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH-------HhcccCCC
Confidence 999999999999999987655 44433 56665544322 2223479999999888765543 233 578
Q ss_pred EEEecccchhhccCCHHHHHHHHHhC
Q 012319 343 FFVLDEADRMIENGHFRELQSIIDML 368 (466)
Q Consensus 343 ~lViDEad~ll~~g~~~~l~~Il~~l 368 (466)
+++||.+|.+|..+ ..+..++..+
T Consensus 206 fifVDDVDA~Lkas--kNvDriL~Ll 229 (1187)
T COG1110 206 FIFVDDVDAILKAS--KNVDRLLRLL 229 (1187)
T ss_pred EEEEccHHHHHhcc--ccHHHHHHHc
Confidence 99999999988654 3444444444
No 113
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.10 E-value=3e-09 Score=116.77 Aligned_cols=165 Identities=18% Similarity=0.192 Sum_probs=109.5
Q ss_pred cHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHH
Q 012319 197 TPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 276 (466)
Q Consensus 197 t~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa 276 (466)
+..+...+..+ ..+. .++++|.||+|||......++...... + ..+++++.-|.|--|
T Consensus 175 ~~~r~~Il~~i-~~~q-VvvIsGeTGcGKTTQvpQfiLd~~~~~-------------------~-~~~~IicTQPRRIsA 232 (924)
T KOG0920|consen 175 YKMRDTILDAI-EENQ-VVVISGETGCGKTTQVPQFILDEAIES-------------------G-AACNIICTQPRRISA 232 (924)
T ss_pred HHHHHHHHHHH-HhCc-eEEEeCCCCCCchhhhhHHHHHHHHhc-------------------C-CCCeEEecCCchHHH
Confidence 34445555555 5555 999999999999988777777776543 1 456778888888777
Q ss_pred HHHHHHHHH-HHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch-hhc
Q 012319 277 LQVTDHLKE-VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MIE 354 (466)
Q Consensus 277 ~Qv~~~l~~-l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~-ll~ 354 (466)
.-|++++.. .+...+-.|+.-++..+ .......+++||.|.|++.|..+ ..+..+.+||+||+|. =++
T Consensus 233 IsvAeRVa~ER~~~~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~ 302 (924)
T KOG0920|consen 233 ISVAERVAKERGESLGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSIN 302 (924)
T ss_pred HHHHHHHHHHhccccCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCC
Confidence 777766643 22223322322222211 12234789999999999999764 6689999999999993 333
Q ss_pred cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhhc
Q 012319 355 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 418 (466)
Q Consensus 355 ~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~~ 418 (466)
..|.-.+...+-..+ +..++|+||||+. ...|.++++..
T Consensus 303 ~DflLi~lk~lL~~~------------------------p~LkvILMSAT~d-ae~fs~YF~~~ 341 (924)
T KOG0920|consen 303 TDFLLILLKDLLPRN------------------------PDLKVILMSATLD-AELFSDYFGGC 341 (924)
T ss_pred cccHHHHHHHHhhhC------------------------CCceEEEeeeecc-hHHHHHHhCCC
Confidence 445433333322222 5789999999996 67777777643
No 114
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.09 E-value=2.9e-09 Score=103.42 Aligned_cols=154 Identities=23% Similarity=0.303 Sum_probs=108.6
Q ss_pred CCcHHHHHHHHHHH---hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAAA---HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l---~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.+||.|+.+-..++ .++. ++|++|-||+|||... .+.++..++. |.++.|.+|
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~-~~lv~AV~GaGKTEMi-f~~i~~al~~----------------------G~~vciASP 152 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKE-DTLVWAVTGAGKTEMI-FQGIEQALNQ----------------------GGRVCIASP 152 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcC-cEEEEEecCCCchhhh-HHHHHHHHhc----------------------CCeEEEecC
Confidence 68999987655543 4555 9999999999999654 4555555432 558999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ 351 (466)
....|..++.+|+..+. ++.+.+++|+....- ...++|||...|++.- ..+++|||||+|.
T Consensus 153 RvDVclEl~~Rlk~aF~--~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk----------~aFD~liIDEVDA 213 (441)
T COG4098 153 RVDVCLELYPRLKQAFS--NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFK----------QAFDLLIIDEVDA 213 (441)
T ss_pred cccchHHHHHHHHHhhc--cCCeeeEecCCchhc-------cccEEEEehHHHHHHH----------hhccEEEEecccc
Confidence 99999999999998765 467788998876532 2689999998887654 3567999999997
Q ss_pred hhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhh
Q 012319 352 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 417 (466)
Q Consensus 352 ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~ 417 (466)
.- ...-..++.-.+.-. +..--+|.+|||.+ ..+.+++..
T Consensus 214 FP-~~~d~~L~~Av~~ar-----------------------k~~g~~IylTATp~--k~l~r~~~~ 253 (441)
T COG4098 214 FP-FSDDQSLQYAVKKAR-----------------------KKEGATIYLTATPT--KKLERKILK 253 (441)
T ss_pred cc-ccCCHHHHHHHHHhh-----------------------cccCceEEEecCCh--HHHHHHhhh
Confidence 53 222233333333222 24567899999986 344444433
No 115
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.09 E-value=1.4e-09 Score=107.48 Aligned_cols=74 Identities=24% Similarity=0.267 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHH---HhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAA---AHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~---l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.|+|.|.+.+..+ +..++ ++++.||||+|||++|++|++.++..... .....+++|+++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~-~~~~eapTGtGKTl~~L~~al~~~~~~~~-----------------~~~~~kvi~~t~ 69 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGK-IGILESPTGTGKTLSLLCLTLTWLRSFPE-----------------RIQKIKLIYLSR 69 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCC-cEEEECCCCcchhHHHHHHHHHHHHhCcc-----------------cccccceeEEec
Confidence 4799998854443 35565 99999999999999999999987753211 002347888888
Q ss_pred cHHHHHHHHHHHHHH
Q 012319 272 TRELALQVTDHLKEV 286 (466)
Q Consensus 272 treLa~Qv~~~l~~l 286 (466)
|..+..|+...++++
T Consensus 70 T~~~~~q~i~~l~~~ 84 (289)
T smart00488 70 TVSEIEKRLEELRKL 84 (289)
T ss_pred cHHHHHHHHHHHHhc
Confidence 888877777666654
No 116
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.09 E-value=1.4e-09 Score=107.48 Aligned_cols=74 Identities=24% Similarity=0.267 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHH---HhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAA---AHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~---l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.|+|.|.+.+..+ +..++ ++++.||||+|||++|++|++.++..... .....+++|+++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~-~~~~eapTGtGKTl~~L~~al~~~~~~~~-----------------~~~~~kvi~~t~ 69 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGK-IGILESPTGTGKTLSLLCLTLTWLRSFPE-----------------RIQKIKLIYLSR 69 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCC-cEEEECCCCcchhHHHHHHHHHHHHhCcc-----------------cccccceeEEec
Confidence 4799998854443 35565 99999999999999999999987753211 002347888888
Q ss_pred cHHHHHHHHHHHHHH
Q 012319 272 TRELALQVTDHLKEV 286 (466)
Q Consensus 272 treLa~Qv~~~l~~l 286 (466)
|..+..|+...++++
T Consensus 70 T~~~~~q~i~~l~~~ 84 (289)
T smart00489 70 TVSEIEKRLEELRKL 84 (289)
T ss_pred cHHHHHHHHHHHHhc
Confidence 888877777666654
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.07 E-value=8.3e-10 Score=120.72 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=102.3
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. .|+++|...--.+ +.|+ |+...||+|||+++.+|++-..+. |..|.|++
T Consensus 79 lGm-~~ydVQliGg~~L-h~G~---iaEM~TGEGKTLvA~l~a~l~al~-----------------------G~~VhvvT 130 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTL-HEGK---IAEMRTGEGKTLVGTLAVYLNALS-----------------------GKGVHVVT 130 (913)
T ss_pred hCC-CcchhHHHhhhHh-ccCc---cccccCCCCChHHHHHHHHHHHHc-----------------------CCCEEEEe
Confidence 564 7888887665444 6664 789999999999999999866542 45799999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCCC---CccccCCcccEEEe
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVL 346 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~l~~lVi 346 (466)
||--||.|=+..+..++..+|+.++++.++++......... +||++||..-| .+.|...- ......+.+.++||
T Consensus 131 ~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIV 208 (913)
T PRK13103 131 VNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVI 208 (913)
T ss_pred CCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEe
Confidence 99999999999999999999999999999887765544433 89999999886 23332110 01122478899999
Q ss_pred cccchhh
Q 012319 347 DEADRMI 353 (466)
Q Consensus 347 DEad~ll 353 (466)
||+|.+|
T Consensus 209 DEvDsiL 215 (913)
T PRK13103 209 DEVDSIL 215 (913)
T ss_pred chhhhee
Confidence 9999865
No 118
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.06 E-value=2.4e-09 Score=121.45 Aligned_cols=87 Identities=23% Similarity=0.234 Sum_probs=63.7
Q ss_pred CCCCCCcHHHHHHHHH---HHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEE
Q 012319 191 LGFKEPTPIQKACIPA---AAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 267 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~---~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 267 (466)
.|| .++|-|.+.+.. .+..+. .+++.|+||+|||++|++|++.+... .+.++|
T Consensus 254 ~~~-e~R~~Q~~m~~~v~~~l~~~~-~~~iEA~TGtGKTlaYLlpa~~~a~~----------------------~~~~vv 309 (928)
T PRK08074 254 PKY-EKREGQQEMMKEVYTALRDSE-HALIEAGTGTGKSLAYLLPAAYFAKK----------------------KEEPVV 309 (928)
T ss_pred CCC-cCCHHHHHHHHHHHHHHhcCC-CEEEECCCCCchhHHHHHHHHHHhhc----------------------cCCeEE
Confidence 345 789999885443 445665 89999999999999999999866532 234799
Q ss_pred EEeCcHHHHHHHHH----HHHHHHcCCCcEEEEEECCCC
Q 012319 268 IITPTRELALQVTD----HLKEVAKGINVRVVPIVGGMS 302 (466)
Q Consensus 268 il~PtreLa~Qv~~----~l~~l~~~~~~~v~~~~gg~~ 302 (466)
|-++|+.|..|+.. .+.+++ +..++++++.|..+
T Consensus 310 IsT~T~~LQ~Ql~~kDiP~L~~~~-~~~~~~~~lKGr~n 347 (928)
T PRK08074 310 ISTYTIQLQQQLLEKDIPLLQKIF-PFPVEAALLKGRSH 347 (928)
T ss_pred EEcCCHHHHHHHHHhhHHHHHHHc-CCCceEEEEEcccc
Confidence 99999999999866 234333 23566776666654
No 119
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.04 E-value=7.5e-11 Score=129.37 Aligned_cols=174 Identities=22% Similarity=0.383 Sum_probs=126.8
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 193 FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 193 ~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
|....|+|.++++.+.+.+. +|+++||+|||||+|.-+.++. +.+..++++++|.
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd-~v~vga~~gsgkt~~ae~a~l~------------------------~~~~~~~vyi~p~ 1195 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTND-NVLVGAPNGSGKTACAELALLR------------------------PDTIGRAVYIAPL 1195 (1674)
T ss_pred ccccCCceEEEEeeeecccc-eEEEecCCCCchhHHHHHHhcC------------------------CccceEEEEecch
Confidence 34458999999999988887 9999999999999998887765 1234589999999
Q ss_pred HHHHHHHHHHHH-HHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch
Q 012319 273 RELALQVTDHLK-EVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351 (466)
Q Consensus 273 reLa~Qv~~~l~-~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ 351 (466)
-+.+..+++.+. ++....|..++.+.|..+.+.. +....+|||+||.+ |+++. ..+.+++.|.||+|.
T Consensus 1196 ~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~-~d~lq-------~iQ~v~l~i~d~lh~ 1264 (1674)
T KOG0951|consen 1196 EEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQ-WDLLQ-------SIQQVDLFIVDELHL 1264 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCceEEecCCccccchH---HhhhcceEEechhH-HHHHh-------hhhhcceEeeehhhh
Confidence 999998877664 4555678888888888765433 45567999999999 45552 357889999999998
Q ss_pred hhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhhcccc
Q 012319 352 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK 421 (466)
Q Consensus 352 ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~~~~~ 421 (466)
+. ..+....+-|+ ++.++.++-.+..+++.+|..++|+.+++.--..+.++
T Consensus 1265 ig-g~~g~v~evi~------------------S~r~ia~q~~k~ir~v~ls~~lana~d~ig~s~~~v~N 1315 (1674)
T KOG0951|consen 1265 IG-GVYGAVYEVIC------------------SMRYIASQLEKKIRVVALSSSLANARDLIGASSSGVFN 1315 (1674)
T ss_pred hc-ccCCceEEEEe------------------eHHHHHHHHHhheeEEEeehhhccchhhccccccceee
Confidence 75 22222222221 12344444457899999999999998885443333333
No 120
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.04 E-value=7.2e-10 Score=96.20 Aligned_cols=102 Identities=21% Similarity=0.227 Sum_probs=66.6
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
-.++-..+|+|||--.+--++...+.. +.++|||.|||.++..+.+.|+.. +++
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~~i~~----------------------~~rvLvL~PTRvva~em~~aL~~~----~~~ 59 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVREAIKR----------------------RLRVLVLAPTRVVAEEMYEALKGL----PVR 59 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHHHHHT----------------------T--EEEEESSHHHHHHHHHHTTTS----SEE
T ss_pred eeEEecCCCCCCcccccHHHHHHHHHc----------------------cCeEEEecccHHHHHHHHHHHhcC----Ccc
Confidence 457889999999987765555554432 458999999999999998888643 444
Q ss_pred EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchh
Q 012319 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352 (466)
Q Consensus 294 v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~l 352 (466)
+....-+ .....+.-|=|+|-+-+.+.+.++ ..+..++++|+||||..
T Consensus 60 ~~t~~~~-------~~~~g~~~i~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 60 FHTNARM-------RTHFGSSIIDVMCHATYGHFLLNP----CRLKNYDVIIMDECHFT 107 (148)
T ss_dssp EESTTSS-----------SSSSEEEEEHHHHHHHHHTS----SCTTS-SEEEECTTT--
T ss_pred cCceeee-------ccccCCCcccccccHHHHHHhcCc----ccccCccEEEEeccccC
Confidence 4321111 122355678889999888877653 44688999999999975
No 121
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.00 E-value=2e-09 Score=119.10 Aligned_cols=170 Identities=22% Similarity=0.163 Sum_probs=111.4
Q ss_pred CCcHHHHHHHHHHHhcCC-c-cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 195 EPTPIQKACIPAAAHQGK-V-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~-~-dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
.+.+.|..++..++.... . .+++.||||+|||.+.+++++..+... .....+++++.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-------------------~~~~~r~i~vlP~ 255 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-------------------IKLKSRVIYVLPF 255 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-------------------ccccceEEEEccH
Confidence 348899999888765322 2 678999999999999999888776431 1245699999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHH--------------HhcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 273 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL--------------LKARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~--------------l~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
|.++.++++.++.+....++.....+|.....-.... ......++++||-.+............ +
T Consensus 256 ~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 334 (733)
T COG1203 256 RTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEF-L 334 (733)
T ss_pred HHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHH-H
Confidence 9999999999998765443332212333222111000 011246777777666553322221111 2
Q ss_pred C--cccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 339 H--TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 339 ~--~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
. ..+.+|+||+|.+-+......+..++..+.. ....+|+||||+|.
T Consensus 335 ~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~-----------------------~g~~ill~SATlP~ 382 (733)
T COG1203 335 ALLLTSLVILDEVHLYADETMLAALLALLEALAE-----------------------AGVPVLLMSATLPP 382 (733)
T ss_pred HHHHhhchhhccHHhhcccchHHHHHHHHHHHHh-----------------------CCCCEEEEecCCCH
Confidence 2 2378999999988755466677777766653 45789999999973
No 122
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.98 E-value=3.2e-09 Score=111.20 Aligned_cols=157 Identities=20% Similarity=0.245 Sum_probs=93.1
Q ss_pred HHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHH
Q 012319 202 ACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 281 (466)
Q Consensus 202 ~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~ 281 (466)
+.+..+ ..+. .+|+.|.||||||.....-+.+..+ ...+ ++.+.-|.|-.|.-++.
T Consensus 58 ~il~~v-e~nq-vlIviGeTGsGKSTQipQyL~eaG~--------------------~~~g--~I~~TQPRRVAavslA~ 113 (674)
T KOG0922|consen 58 QILYAV-EDNQ-VLIVIGETGSGKSTQIPQYLAEAGF--------------------ASSG--KIACTQPRRVAAVSLAK 113 (674)
T ss_pred HHHHHH-HHCC-EEEEEcCCCCCccccHhHHHHhccc--------------------ccCC--cEEeecCchHHHHHHHH
Confidence 444444 5555 8999999999999764443443332 2222 35556677765555555
Q ss_pred HHHHHH-cCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch-hhccCCHH
Q 012319 282 HLKEVA-KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MIENGHFR 359 (466)
Q Consensus 282 ~l~~l~-~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~-ll~~g~~~ 359 (466)
++..-. ..+|-.|+..+ ++...-.....|.+.|.|.|++.+..+ ..|+.+++|||||||. -+ +-+
T Consensus 114 RVAeE~~~~lG~~VGY~I------RFed~ts~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHERsl---~TD 180 (674)
T KOG0922|consen 114 RVAEEMGCQLGEEVGYTI------RFEDSTSKDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHERSL---HTD 180 (674)
T ss_pred HHHHHhCCCcCceeeeEE------EecccCCCceeEEEecchHHHHHHhcC----CccccccEEEEechhhhhh---HHH
Confidence 543322 22232332221 222223345789999999999988654 5589999999999994 11 222
Q ss_pred HHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhh
Q 012319 360 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 417 (466)
Q Consensus 360 ~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~ 417 (466)
-+.-+++.+-.. +....+|++|||+. +.-|...+..
T Consensus 181 iLlGlLKki~~~---------------------R~~LklIimSATld-a~kfS~yF~~ 216 (674)
T KOG0922|consen 181 ILLGLLKKILKK---------------------RPDLKLIIMSATLD-AEKFSEYFNN 216 (674)
T ss_pred HHHHHHHHHHhc---------------------CCCceEEEEeeeec-HHHHHHHhcC
Confidence 233333332211 14579999999996 5555555543
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.98 E-value=5.4e-09 Score=111.94 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=103.2
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. .|+++|.-..-.+ +.| + |+...||+|||++..+|++-..+. |..|.|++
T Consensus 75 lg~-r~ydvQlig~l~L-l~G--~-VaEM~TGEGKTLvA~l~a~l~AL~-----------------------G~~VhvvT 126 (764)
T PRK12326 75 LGL-RPFDVQLLGALRL-LAG--D-VIEMATGEGKTLAGAIAAAGYALQ-----------------------GRRVHVIT 126 (764)
T ss_pred cCC-CcchHHHHHHHHH-hCC--C-cccccCCCCHHHHHHHHHHHHHHc-----------------------CCCeEEEc
Confidence 566 7899998888666 555 3 679999999999999998877653 45799999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-----HHHHhCCCCccccCCcccEEE
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-----WELMSGGEKHLVELHTLSFFV 345 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-----~~~l~~~~~~~~~l~~l~~lV 345 (466)
|+--||.|=++.+..++..+|++++++.++.+........ .+||+.+|..-| .+.|... ........+.+.|
T Consensus 127 ~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~-~~~~v~R~~~faI 203 (764)
T PRK12326 127 VNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTD-VADLVSPNPDVAI 203 (764)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccC-hHhhcCCccceee
Confidence 9999999999999999999999999999988865444333 589999999875 2333211 1112356788999
Q ss_pred ecccchhh
Q 012319 346 LDEADRMI 353 (466)
Q Consensus 346 iDEad~ll 353 (466)
|||+|.||
T Consensus 204 VDEvDSiL 211 (764)
T PRK12326 204 IDEADSVL 211 (764)
T ss_pred ecchhhhe
Confidence 99999876
No 124
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.97 E-value=2.6e-09 Score=105.43 Aligned_cols=147 Identities=20% Similarity=0.218 Sum_probs=85.1
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
..|++..+|+|||+..+..+ ..+... ......-.+|||+|. .+..|...++..++....++
T Consensus 27 g~lL~de~GlGKT~~~i~~~-~~l~~~-----------------~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~ 87 (299)
T PF00176_consen 27 GGLLADEMGLGKTITAIALI-SYLKNE-----------------FPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLR 87 (299)
T ss_dssp EEEE---TTSSHHHHHHHHH-HHHHHC-----------------CTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-
T ss_pred CEEEEECCCCCchhhhhhhh-hhhhhc-----------------cccccccceeEeecc-chhhhhhhhhcccccccccc
Confidence 78999999999998775543 333221 001111249999999 88899999999998655667
Q ss_pred EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCC
Q 012319 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNG 373 (466)
Q Consensus 294 v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~ 373 (466)
+..+.|...............+|+|+|...+...........+.--...+|||||+|.+- +........+..+.
T Consensus 88 v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k--~~~s~~~~~l~~l~---- 161 (299)
T PF00176_consen 88 VIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK--NKDSKRYKALRKLR---- 161 (299)
T ss_dssp EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT--TTTSHHHHHHHCCC----
T ss_pred ccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccc--cccccccccccccc----
Confidence 766666651222222223467999999999881111001111112347899999999983 33334444444443
Q ss_pred CCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 374 SNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
....+++|||..
T Consensus 162 ---------------------~~~~~lLSgTP~ 173 (299)
T PF00176_consen 162 ---------------------ARYRWLLSGTPI 173 (299)
T ss_dssp ---------------------ECEEEEE-SS-S
T ss_pred ---------------------cceEEeeccccc
Confidence 457789999975
No 125
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.94 E-value=3.6e-09 Score=113.27 Aligned_cols=142 Identities=20% Similarity=0.204 Sum_probs=98.4
Q ss_pred CCCcHHHHHHHHHHH---hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 194 KEPTPIQKACIPAAA---HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l---~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
..|+.+|..||..+. ..++..+|++..||+|||.++ +.++..|++... -.|+|||+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~--------------------~KRVLFLa 222 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGW--------------------VKRVLFLA 222 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcch--------------------hheeeEEe
Confidence 368899999987653 344447999999999999887 556666665421 23899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCC--CccccCCcccEEEecc
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE--KHLVELHTLSFFVLDE 348 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~--~~~~~l~~l~~lViDE 348 (466)
-++.|+.|.+..+..+...-. .+..+.+-. ....+.|.|+|...+...+.... ...+....+++|||||
T Consensus 223 DR~~Lv~QA~~af~~~~P~~~-~~n~i~~~~--------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDE 293 (875)
T COG4096 223 DRNALVDQAYGAFEDFLPFGT-KMNKIEDKK--------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDE 293 (875)
T ss_pred chHHHHHHHHHHHHHhCCCcc-ceeeeeccc--------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEech
Confidence 999999999999888765321 111111111 11157999999999988876542 2234455689999999
Q ss_pred cchhhccCCHHHHHHHHHhCC
Q 012319 349 ADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 349 ad~ll~~g~~~~l~~Il~~l~ 369 (466)
||+- .+.....|+.++.
T Consensus 294 aHRg----i~~~~~~I~dYFd 310 (875)
T COG4096 294 AHRG----IYSEWSSILDYFD 310 (875)
T ss_pred hhhh----HHhhhHHHHHHHH
Confidence 9964 3445557777765
No 126
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.92 E-value=7e-09 Score=113.11 Aligned_cols=133 Identities=22% Similarity=0.316 Sum_probs=102.8
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. .|+++|.-..-.+ +.| + |+...||+|||++..+|++-..+. |.+|-|++
T Consensus 77 ~g~-~~~dvQlig~l~l-~~G--~-iaEm~TGEGKTLvA~l~a~l~al~-----------------------G~~v~vvT 128 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVL-HEG--N-IAEMKTGEGKTLTATLPVYLNALT-----------------------GKGVHVVT 128 (796)
T ss_pred hCC-CCchhHHHHHHHH-hcC--C-cccccCCCCCcHHHHHHHHHHHHc-----------------------CCCeEEEe
Confidence 565 7899997776544 666 4 889999999999999998877753 45799999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHH-HHHhCC---CCccccCCcccEEEe
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW-ELMSGG---EKHLVELHTLSFFVL 346 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~-~~l~~~---~~~~~~l~~l~~lVi 346 (466)
||--||.|=+..+..++..+|+.++++.|+.+....... -.+||+.||..-|- +.|... .......+.+.+.||
T Consensus 129 ~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIv 206 (796)
T PRK12906 129 VNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIV 206 (796)
T ss_pred ccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeee
Confidence 999999999999999999999999999998877654333 36899999998873 233211 001122467889999
Q ss_pred cccchhh
Q 012319 347 DEADRMI 353 (466)
Q Consensus 347 DEad~ll 353 (466)
||+|.||
T Consensus 207 DEvDSiL 213 (796)
T PRK12906 207 DEVDSIL 213 (796)
T ss_pred ccchhee
Confidence 9999865
No 127
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.89 E-value=1.7e-08 Score=110.15 Aligned_cols=132 Identities=24% Similarity=0.289 Sum_probs=103.8
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. .|+++|...--.+ +.|+ |+...||-|||+++.+|++-..+. |..|-||+
T Consensus 82 lG~-r~ydVQliGgl~L-h~G~---IAEM~TGEGKTL~atlpaylnAL~-----------------------GkgVhVVT 133 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL-HEGQ---IAEMKTGEGKTLVATLPSYLNALT-----------------------GKGVHVVT 133 (939)
T ss_pred hCC-CcchhHHHhhhhh-cCCc---eeeecCCCChhHHHHHHHHHHhhc-----------------------CCCeEEEe
Confidence 555 7888887666554 6654 789999999999999998765542 45799999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-----HHHHhCCCCccccCCcccEEE
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-----WELMSGGEKHLVELHTLSFFV 345 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-----~~~l~~~~~~~~~l~~l~~lV 345 (466)
++..||.+=++.+..+...+|+.|+++.+++...... ..-.+||++||+..| .+.|.... .....+.+.+.|
T Consensus 134 vNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~-~~~vqR~~~faI 210 (939)
T PRK12902 134 VNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDI-SEVVQRPFNYCV 210 (939)
T ss_pred CCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccc-cccccCccceEE
Confidence 9999999999999999999999999998887765433 334799999999998 55554311 113467889999
Q ss_pred ecccchhh
Q 012319 346 LDEADRMI 353 (466)
Q Consensus 346 iDEad~ll 353 (466)
|||||.||
T Consensus 211 VDEvDSIL 218 (939)
T PRK12902 211 IDEVDSIL 218 (939)
T ss_pred Eeccccee
Confidence 99999865
No 128
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.87 E-value=1.2e-08 Score=111.36 Aligned_cols=132 Identities=23% Similarity=0.268 Sum_probs=100.2
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. .|+++|....-.+ +.| -|+...||.|||+++.+|++-..+ .|..|.||+
T Consensus 73 lG~-r~ydvQlig~l~L-~~G---~IaEm~TGEGKTL~a~l~ayl~aL-----------------------~G~~VhVvT 124 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL-NDG---KIAEMKTGEGKTLVATLPAYLNAL-----------------------TGKGVHIVT 124 (870)
T ss_pred hCC-CCCchHhhhhHhh-cCC---ccccccCCCCchHHHHHHHHHHHh-----------------------cCCceEEEe
Confidence 566 5888997665443 444 388999999999999999864433 245799999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-----HHHHhCCCCccccCCcccEEE
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-----WELMSGGEKHLVELHTLSFFV 345 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-----~~~l~~~~~~~~~l~~l~~lV 345 (466)
++..||.+-++.+..++..+|+.|+++.++++....... -.+||+.+|..-| .+.|.... .....+.+.+.|
T Consensus 125 ~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~-~~~v~r~~~faI 201 (870)
T CHL00122 125 VNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSL-SDVVQRPFNYCI 201 (870)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcCh-HHhhccccceee
Confidence 999999999999999999999999999988887554333 3489999999754 44432211 112357789999
Q ss_pred ecccchhh
Q 012319 346 LDEADRMI 353 (466)
Q Consensus 346 iDEad~ll 353 (466)
|||||.||
T Consensus 202 VDEvDSiL 209 (870)
T CHL00122 202 IDEVDSIL 209 (870)
T ss_pred eecchhhe
Confidence 99999866
No 129
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.81 E-value=7.7e-08 Score=108.46 Aligned_cols=144 Identities=18% Similarity=0.206 Sum_probs=93.7
Q ss_pred CCcHHHHHHHHHHHh---cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAAAH---QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~---~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.+.++|...+..++. .+. +.|++-..|.|||+..+ .++.++...+ + ....+|||||
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~-gGILADEMGLGKTlQaI-alL~~L~~~~------------------~-~~gp~LIVvP 227 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGI-NGILADEMGLGKTLQTI-SLLGYLHEYR------------------G-ITGPHMVVAP 227 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCC-CEEEEeCCCccHHHHHH-HHHHHHHHhc------------------C-CCCCEEEEeC
Confidence 689999999877652 333 78899999999998763 3444443211 1 1124899999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHH---HHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecc
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER---LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 348 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~---~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDE 348 (466)
. .+..+..++|..++. .+++..++|......... ......+|+|+|.+.+...... +.--...+|||||
T Consensus 228 ~-SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDE 299 (1033)
T PLN03142 228 K-STLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDE 299 (1033)
T ss_pred h-HHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcC
Confidence 6 667889999988874 456666776543221111 1124689999999988654321 1112457999999
Q ss_pred cchhhccCCHHHHHHHHHhCC
Q 012319 349 ADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 349 ad~ll~~g~~~~l~~Il~~l~ 369 (466)
||+|- +....+..++..+.
T Consensus 300 AHrIK--N~~Sklskalr~L~ 318 (1033)
T PLN03142 300 AHRIK--NENSLLSKTMRLFS 318 (1033)
T ss_pred ccccC--CHHHHHHHHHHHhh
Confidence 99984 34455556666654
No 130
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.81 E-value=1.8e-08 Score=112.97 Aligned_cols=132 Identities=23% Similarity=0.196 Sum_probs=84.0
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.|.|+|..++..++......+|+.-.+|.|||+..++.+-..++.. ..-++|||||+ .
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g---------------------~~~rvLIVvP~-s 209 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG---------------------RAERVLILVPE-T 209 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC---------------------CCCcEEEEcCH-H
Confidence 5999999998777654444889999999999998866554443321 12379999997 8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHH--HHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchh
Q 012319 275 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE--RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~--~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~l 352 (466)
|+.|...++...+ ++.+..+.++....... .......+++|+|.+.|...-. ....+.-...++|||||||++
T Consensus 210 L~~QW~~El~~kF---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~--~~~~l~~~~wdlvIvDEAH~l 284 (956)
T PRK04914 210 LQHQWLVEMLRRF---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQ--RLEQALAAEWDLLVVDEAHHL 284 (956)
T ss_pred HHHHHHHHHHHHh---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHH--HHHHHhhcCCCEEEEechhhh
Confidence 9999988886543 44444443332111000 0111246899999887653100 000011235789999999998
Q ss_pred h
Q 012319 353 I 353 (466)
Q Consensus 353 l 353 (466)
-
T Consensus 285 k 285 (956)
T PRK04914 285 V 285 (956)
T ss_pred c
Confidence 5
No 131
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.80 E-value=2.6e-08 Score=103.83 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHH
Q 012319 197 TPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 276 (466)
Q Consensus 197 t~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa 276 (466)
.++-.+.+.++ .... .+||.|.||||||.....-+.+..+. .++.++-+.-|.|-.|
T Consensus 267 y~ykdell~av-~e~Q-VLiI~GeTGSGKTTQiPQyL~EaGyt---------------------k~gk~IgcTQPRRVAA 323 (902)
T KOG0923|consen 267 YPYKDELLKAV-KEHQ-VLIIVGETGSGKTTQIPQYLYEAGYT---------------------KGGKKIGCTQPRRVAA 323 (902)
T ss_pred hhhHHHHHHHH-HhCc-EEEEEcCCCCCccccccHHHHhcccc---------------------cCCceEeecCcchHHH
Confidence 34445666666 5554 89999999999997654434433321 1233455556777777
Q ss_pred HHHHHHHHH-H----HcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch
Q 012319 277 LQVTDHLKE-V----AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351 (466)
Q Consensus 277 ~Qv~~~l~~-l----~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ 351 (466)
.-|+..+.. + +..+|+.+ ++......+.-|-++|.|+|++-+... .+|.+++++||||||.
T Consensus 324 mSVAaRVA~EMgvkLG~eVGYsI----------RFEdcTSekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHE 389 (902)
T KOG0923|consen 324 MSVAARVAEEMGVKLGHEVGYSI----------RFEDCTSEKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHE 389 (902)
T ss_pred HHHHHHHHHHhCcccccccceEE----------EeccccCcceeeeeecchhHHHHHhcc----ccccceeEEEeehhhh
Confidence 777655533 2 22234443 122222345678999999999877654 6799999999999994
Q ss_pred -hhccC-CHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHH
Q 012319 352 -MIENG-HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 415 (466)
Q Consensus 352 -ll~~g-~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l 415 (466)
-+... .+..|..|...- +...+|+.|||+. +..|...+
T Consensus 390 RTL~TDILfgLvKDIar~R-------------------------pdLKllIsSAT~D-AekFS~fF 429 (902)
T KOG0923|consen 390 RTLHTDILFGLVKDIARFR-------------------------PDLKLLISSATMD-AEKFSAFF 429 (902)
T ss_pred hhhhhhHHHHHHHHHHhhC-------------------------CcceEEeeccccC-HHHHHHhc
Confidence 22111 122333333222 5789999999996 55565554
No 132
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.78 E-value=8.9e-08 Score=105.51 Aligned_cols=65 Identities=31% Similarity=0.346 Sum_probs=50.9
Q ss_pred CCCCCcHHHHHHHHHH---Hhc-----CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCC
Q 012319 192 GFKEPTPIQKACIPAA---AHQ-----GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH 263 (466)
Q Consensus 192 g~~~pt~iQ~~~i~~~---l~~-----~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (466)
|| .+++-|.+.+..+ +.. ++ .+++-|+||+|||++|++|++-..... +
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~-~lviEAgTGtGKTlaYLlPai~~A~~~----------------------~ 78 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGR-ILVIEAGTGVGKTLSYLLAGIPIARAE----------------------K 78 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccc-eEEEECCCCcchhHHHHHHHHHHHHHc----------------------C
Confidence 55 7899998855444 344 24 789999999999999999998765432 3
Q ss_pred eEEEEEeCcHHHHHHHH
Q 012319 264 LRALIITPTRELALQVT 280 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~ 280 (466)
-++||=+.|+.|-.|+.
T Consensus 79 k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 79 KKLVISTATVALQEQLV 95 (697)
T ss_pred CeEEEEcCCHHHHHHHH
Confidence 47999999999999985
No 133
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.75 E-value=2e-07 Score=90.28 Aligned_cols=133 Identities=24% Similarity=0.361 Sum_probs=96.5
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
.|+ .|++.|..++-.+ +.| . |+...||=|||++..+|++-+.+. |..|-|++
T Consensus 74 ~g~-~p~~vQll~~l~L-~~G--~-laEm~TGEGKTli~~l~a~~~AL~-----------------------G~~V~vvT 125 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALAL-HKG--R-LAEMKTGEGKTLIAALPAALNALQ-----------------------GKGVHVVT 125 (266)
T ss_dssp TS-----HHHHHHHHHH-HTT--S-EEEESTTSHHHHHHHHHHHHHHTT-----------------------SS-EEEEE
T ss_pred cCC-cccHHHHhhhhhc-ccc--e-eEEecCCCCcHHHHHHHHHHHHHh-----------------------cCCcEEEe
Confidence 555 7999999888665 555 3 889999999999998887766542 45799999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHH-HHHhCC-C--CccccCCcccEEEe
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW-ELMSGG-E--KHLVELHTLSFFVL 346 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~-~~l~~~-~--~~~~~l~~l~~lVi 346 (466)
....||.+=++.+..++..+|+.++.++++.......... .++|+.+|...|. +.|... . ......+.+.++||
T Consensus 126 ~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~iv 203 (266)
T PF07517_consen 126 SNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIV 203 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEE
T ss_pred ccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEE
Confidence 9999999999999999999999999999998865433333 4689999999884 333221 1 11112578899999
Q ss_pred cccchhh
Q 012319 347 DEADRMI 353 (466)
Q Consensus 347 DEad~ll 353 (466)
||||.|+
T Consensus 204 DEvDs~L 210 (266)
T PF07517_consen 204 DEVDSIL 210 (266)
T ss_dssp CTHHHHT
T ss_pred eccceEE
Confidence 9999876
No 134
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.73 E-value=4.5e-08 Score=102.35 Aligned_cols=156 Identities=20% Similarity=0.236 Sum_probs=91.1
Q ss_pred HHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEE-eCcHHHHHHH
Q 012319 201 KACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII-TPTRELALQV 279 (466)
Q Consensus 201 ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil-~PtreLa~Qv 279 (466)
.+.+..+ ..+. .||+.+.||||||......+++.- +... .+|.+ -|.|..|.-|
T Consensus 362 ~~ll~~i-r~n~-vvvivgETGSGKTTQl~QyL~edG--------------------Y~~~---GmIGcTQPRRvAAiSV 416 (1042)
T KOG0924|consen 362 DQLLSVI-RENQ-VVVIVGETGSGKTTQLAQYLYEDG--------------------YADN---GMIGCTQPRRVAAISV 416 (1042)
T ss_pred HHHHHHH-hhCc-EEEEEecCCCCchhhhHHHHHhcc--------------------cccC---CeeeecCchHHHHHHH
Confidence 3344333 4454 889999999999976544444332 2222 24444 4777777777
Q ss_pred HHHHHHHH-cCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch-hhccCC
Q 012319 280 TDHLKEVA-KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MIENGH 357 (466)
Q Consensus 280 ~~~l~~l~-~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~-ll~~g~ 357 (466)
+..+..-. ..+|-.|+.-+ ++...-....-|-++|.|.|++-.-.+ ..|..+++||+||||. -+ +
T Consensus 417 AkrVa~EM~~~lG~~VGYsI------RFEdvT~~~T~IkymTDGiLLrEsL~d----~~L~kYSviImDEAHERsl---N 483 (1042)
T KOG0924|consen 417 AKRVAEEMGVTLGDTVGYSI------RFEDVTSEDTKIKYMTDGILLRESLKD----RDLDKYSVIIMDEAHERSL---N 483 (1042)
T ss_pred HHHHHHHhCCccccccceEE------EeeecCCCceeEEEeccchHHHHHhhh----hhhhheeEEEechhhhccc---c
Confidence 76665432 12222221111 111112234679999999998865432 5588999999999995 22 2
Q ss_pred HHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHh
Q 012319 358 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 416 (466)
Q Consensus 358 ~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~ 416 (466)
.+-+.-|++.+-.. +....+|++|||+. +..|.+.++
T Consensus 484 tDilfGllk~~lar---------------------RrdlKliVtSATm~-a~kf~nfFg 520 (1042)
T KOG0924|consen 484 TDILFGLLKKVLAR---------------------RRDLKLIVTSATMD-AQKFSNFFG 520 (1042)
T ss_pred hHHHHHHHHHHHHh---------------------hccceEEEeecccc-HHHHHHHhC
Confidence 22333333222110 14678999999995 667777776
No 135
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.69 E-value=1.5e-09 Score=117.91 Aligned_cols=183 Identities=21% Similarity=0.266 Sum_probs=137.7
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 193 FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 193 ~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
+....|+|.+.+..+++-.. ++++-+|||+|||++|-+.++..+. ..++.+++|++|-
T Consensus 925 ~~~fn~~q~~if~~~y~td~-~~~~g~ptgsgkt~~ae~a~~~~~~---------------------~~p~~kvvyIap~ 982 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDL-NFLLGAPTGSGKTVVAELAIFRALS---------------------YYPGSKVVYIAPD 982 (1230)
T ss_pred hcccCCccceEEEEEeecch-hhhhcCCccCcchhHHHHHHHHHhc---------------------cCCCccEEEEcCC
Confidence 34567788888777655554 8899999999999999988876653 2345799999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchh
Q 012319 273 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~l 352 (466)
.+|+..-.+.+.......|+++.-+.|....... -...++|+|+||.+.-.+..+ ......++++..+|+||.|++
T Consensus 983 kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rs-w~~r~~v~~v~~iv~de~hll 1058 (1230)
T KOG0952|consen 983 KALVKERSDDWSKRDELPGIKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRS-WQTRKYVQSVSLIVLDEIHLL 1058 (1230)
T ss_pred chhhcccccchhhhcccCCceeEeccCccCCChh---heecCceEEcccccccCcccc-ccchhhhccccceeecccccc
Confidence 9999988887776655558899888888766522 224689999999997666543 233455899999999999988
Q ss_pred hccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhhcc
Q 012319 353 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 419 (466)
Q Consensus 353 l~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~~~ 419 (466)
. .+++.-++.|....+. ++......+|.+++|--++|+.+..+||+...
T Consensus 1059 g-~~rgPVle~ivsr~n~-----------------~s~~t~~~vr~~glsta~~na~dla~wl~~~~ 1107 (1230)
T KOG0952|consen 1059 G-EDRGPVLEVIVSRMNY-----------------ISSQTEEPVRYLGLSTALANANDLADWLNIKD 1107 (1230)
T ss_pred c-CCCcceEEEEeecccc-----------------CccccCcchhhhhHhhhhhccHHHHHHhCCCC
Confidence 6 6666666666555442 23333467899999999999999999998643
No 136
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.68 E-value=9.7e-08 Score=103.88 Aligned_cols=140 Identities=14% Similarity=0.170 Sum_probs=96.3
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEE
Q 012319 219 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIV 298 (466)
Q Consensus 219 a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~ 298 (466)
+.+|||||.+|+- ++...+.. |-++|||+|...|+.|+...|...+. +..+..++
T Consensus 167 ~~~GSGKTevyl~-~i~~~l~~----------------------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lh 221 (665)
T PRK14873 167 ALPGEDWARRLAA-AAAATLRA----------------------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLS 221 (665)
T ss_pred cCCCCcHHHHHHH-HHHHHHHc----------------------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEEC
Confidence 3369999999954 55554432 34799999999999999999998763 25688899
Q ss_pred CCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhh---ccCC---HHHHHHHHHhC
Q 012319 299 GGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI---ENGH---FRELQSIIDML 368 (466)
Q Consensus 299 gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll---~~g~---~~~l~~Il~~l 368 (466)
++.+.....+.+ .+...|||||-..+ +..+.++.+|||||-|.-. +.+. ..++-..+..+
T Consensus 222 S~l~~~~R~~~w~~~~~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~ 291 (665)
T PRK14873 222 AGLGPADRYRRWLAVLRGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ 291 (665)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH
Confidence 998876544433 34589999997665 3668899999999998422 1111 22233333332
Q ss_pred CCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhhccc
Q 012319 369 PMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSL 420 (466)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~~~~ 420 (466)
.+..+|+.|||.+ .+...+...+.+
T Consensus 292 -------------------------~~~~lvLgSaTPS--les~~~~~~g~~ 316 (665)
T PRK14873 292 -------------------------HGCALLIGGHART--AEAQALVESGWA 316 (665)
T ss_pred -------------------------cCCcEEEECCCCC--HHHHHHHhcCcc
Confidence 5688999999996 444444444433
No 137
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.67 E-value=1.5e-07 Score=104.22 Aligned_cols=168 Identities=24% Similarity=0.223 Sum_probs=104.7
Q ss_pred CCcHHHHHHHHHHHh------cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEE
Q 012319 195 EPTPIQKACIPAAAH------QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 268 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~------~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi 268 (466)
.-+.+|-.|+..+.. ..+.=+|-.|.||+|||++=.= |+..| .....++|..|
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaL--------------------sd~~~g~Rfsi 466 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYAL--------------------RDDKQGARFAI 466 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHh--------------------CCCCCCceEEE
Confidence 346799888877643 1222456679999999987522 22222 12345678888
Q ss_pred EeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHH----------------------------------------
Q 012319 269 ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER---------------------------------------- 308 (466)
Q Consensus 269 l~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~---------------------------------------- 308 (466)
-+-.|.|-.|.-+.+++-..--.-...+++|+.....-..
T Consensus 467 ALGLRTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~ 546 (1110)
T TIGR02562 467 ALGLRSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIE 546 (1110)
T ss_pred EccccceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchh
Confidence 8899999999888888765433334556666644321110
Q ss_pred ---HHhc--------CCcEEEeCcHHHHHHHhC--CCCccccCCc--ccEEEecccchhhccCCHHHHHHHHHhCCCCCC
Q 012319 309 ---LLKA--------RPELVVGTPGRLWELMSG--GEKHLVELHT--LSFFVLDEADRMIENGHFRELQSIIDMLPMTNG 373 (466)
Q Consensus 309 ---~l~~--------~~dIiV~TP~~L~~~l~~--~~~~~~~l~~--l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~ 373 (466)
.+.. ...|+|||+..|+..... +......+-. -+.|||||+|.+ |......|..++..+..
T Consensus 547 l~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~--- 622 (1110)
T TIGR02562 547 LLGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGL--- 622 (1110)
T ss_pred hhhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHH---
Confidence 0000 157999999999887632 1111111112 268999999976 34455556666654431
Q ss_pred CCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 374 SNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
....+|+||||||.
T Consensus 623 --------------------lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 623 --------------------LGSRVLLSSATLPP 636 (1110)
T ss_pred --------------------cCCCEEEEeCCCCH
Confidence 45789999999973
No 138
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.65 E-value=1.1e-07 Score=96.21 Aligned_cols=181 Identities=18% Similarity=0.183 Sum_probs=111.3
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
...|..+..+++-.+-|+.. -.-|---|+.-+..++.+++ .+++.+.||||||...-..++...+..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R-~~LPvw~~k~~F~~~l~~nQ-~~v~vGetgsGKttQiPq~~~~~~~~~----------- 90 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKR-RELPVWEQKEEFLKLLLNNQ-IIVLVGETGSGKTTQIPQFVLEYELSH----------- 90 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHH-hcCchHHhHHHHHHHHhcCc-eEEEEecCCCCccccCcHHHHHHHHhh-----------
Confidence 45677777777776666543 22355567777888877777 899999999999987655555554322
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHH-----cCCCcEE--EEEECCCCHHHHHHHHhcCCcEEEeCcHHH
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA-----KGINVRV--VPIVGGMSTEKQERLLKARPELVVGTPGRL 324 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~-----~~~~~~v--~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L 324 (466)
...+...-|.|-.|.+++.+...-. ...|+.+ --+.| .+.=+-+||.|.|
T Consensus 91 -----------~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~------------~~T~Lky~tDgmL 147 (699)
T KOG0925|consen 91 -----------LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTS------------PNTLLKYCTDGML 147 (699)
T ss_pred -----------ccceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCC------------hhHHHHHhcchHH
Confidence 1246667788888888776665432 2222222 11111 1122346899999
Q ss_pred HHHHhCCCCccccCCcccEEEecccch-hhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEee
Q 012319 325 WELMSGGEKHLVELHTLSFFVLDEADR-MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 403 (466)
Q Consensus 325 ~~~l~~~~~~~~~l~~l~~lViDEad~-ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SA 403 (466)
++-.-++ ..|.+..+||+||||. -+. -+-+.-+++.+... ++...+|+|||
T Consensus 148 lrEams~----p~l~~y~viiLDeahERtlA---TDiLmGllk~v~~~---------------------rpdLk~vvmSa 199 (699)
T KOG0925|consen 148 LREAMSD----PLLGRYGVIILDEAHERTLA---TDILMGLLKEVVRN---------------------RPDLKLVVMSA 199 (699)
T ss_pred HHHHhhC----cccccccEEEechhhhhhHH---HHHHHHHHHHHHhh---------------------CCCceEEEeec
Confidence 8765443 4589999999999994 211 12222333222211 14689999999
Q ss_pred ecCCCHHHHHHHhh
Q 012319 404 TIALSADFRKKLKH 417 (466)
Q Consensus 404 Tl~~~~~~~~~l~~ 417 (466)
|+- ...|...+..
T Consensus 200 tl~-a~Kfq~yf~n 212 (699)
T KOG0925|consen 200 TLD-AEKFQRYFGN 212 (699)
T ss_pred ccc-hHHHHHHhCC
Confidence 996 4455555443
No 139
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.60 E-value=1.6e-07 Score=103.29 Aligned_cols=74 Identities=31% Similarity=0.373 Sum_probs=58.5
Q ss_pred HCCCCCCcHHHHHHHHHH---HhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEE
Q 012319 190 RLGFKEPTPIQKACIPAA---AHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 266 (466)
Q Consensus 190 ~~g~~~pt~iQ~~~i~~~---l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 266 (466)
.+....|++.|.+.+..+ +.++. .+++.||||+|||++|++|++...... +.++
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~-~~~iEapTGtGKTl~yL~~al~~~~~~----------------------~~~v 66 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGE-GLLIEAPTGTGKTLAYLLPALAYAREE----------------------GKKV 66 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCC-cEEEECCCCccHHHHHHHHHHHHHHHc----------------------CCcE
Confidence 344558999998877544 45564 699999999999999999999887543 2579
Q ss_pred EEEeCcHHHHHHHHHHHHHH
Q 012319 267 LIITPTRELALQVTDHLKEV 286 (466)
Q Consensus 267 Lil~PtreLa~Qv~~~l~~l 286 (466)
+|.++|+.|-.|+.+....+
T Consensus 67 iist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 67 IISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred EEECCCHHHHHHHHHhhcch
Confidence 99999999988887766554
No 140
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.59 E-value=1e-06 Score=97.90 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=84.7
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHH---------HH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH---------LK 284 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~---------l~ 284 (466)
++.+..+||||||.+|+-.|+... +. .+..+.||+||+.+.-..+... |.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~-~~--------------------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~ 119 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELH-QK--------------------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFS 119 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH-HH--------------------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHH
Confidence 889999999999999977665543 21 2345899999998866655544 33
Q ss_pred HHHcCCCcEEEEEECCC-------CHHHHHHHHh-------cCCcEEEeCcHHHHHHHh----------CCC-CccccCC
Q 012319 285 EVAKGINVRVVPIVGGM-------STEKQERLLK-------ARPELVVGTPGRLWELMS----------GGE-KHLVELH 339 (466)
Q Consensus 285 ~l~~~~~~~v~~~~gg~-------~~~~~~~~l~-------~~~dIiV~TP~~L~~~l~----------~~~-~~~~~l~ 339 (466)
....+..+++..+.++. ......+.+. +..+|+|+|-+.|..-.. .+. .....+.
T Consensus 120 ~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~ 199 (986)
T PRK15483 120 QFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALA 199 (986)
T ss_pred HHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHH
Confidence 33333445555555443 1112211221 147999999998854211 000 1111122
Q ss_pred cc-cEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 340 TL-SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 340 ~l-~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
.. -+||+||+|++-. + ...+..| ..|+ +.-+|.||||.+.
T Consensus 200 ~~~PivIiDEPh~~~~-~-~k~~~~i-~~ln-------------------------pl~~lrysAT~~~ 240 (986)
T PRK15483 200 ATRPVVIIDEPHRFPR-D-NKFYQAI-EALK-------------------------PQMIIRFGATFPD 240 (986)
T ss_pred hCCCEEEEECCCCCCc-c-hHHHHHH-HhcC-------------------------cccEEEEeeecCC
Confidence 22 3789999999842 1 1223333 4443 2347889999975
No 141
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.47 E-value=7.1e-07 Score=98.91 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=38.2
Q ss_pred CCCCCCcHHHHHHHHHHH---hcCCccEEEecCCCCchhHHHHHHHHHHHHH
Q 012319 191 LGFKEPTPIQKACIPAAA---HQGKVDIIGAAETGSGKTLAFGLPIMQRLLE 239 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l---~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~ 239 (466)
+-|..++|.|.+.+..++ ..++ ++++.||||+|||++.+.|+|..+..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~-~~llEsPTGtGKTlslL~~aL~~~~~ 56 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGD-EAILEMPSGTGKTISLLSLILAYQQE 56 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCC-ceEEeCCCCCCccHHHHHHHHHHHHh
Confidence 346667999988766553 4555 99999999999999999999987643
No 142
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.36 E-value=2.9e-06 Score=92.70 Aligned_cols=133 Identities=19% Similarity=0.223 Sum_probs=100.3
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. +|+++|.-.--.+ +.|+ |+...||=|||++..+|++-+.+ .|..|-|++
T Consensus 75 lG~-r~ydVQliGglvL-h~G~---IAEMkTGEGKTLvAtLpayLnAL-----------------------~GkgVhVVT 126 (925)
T PRK12903 75 LGK-RPYDVQIIGGIIL-DLGS---VAEMKTGEGKTITSIAPVYLNAL-----------------------TGKGVIVST 126 (925)
T ss_pred hCC-CcCchHHHHHHHH-hcCC---eeeecCCCCccHHHHHHHHHHHh-----------------------cCCceEEEe
Confidence 566 7899997776544 6663 68999999999999999865443 244688899
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCCC---CccccCCcccEEEe
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVL 346 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~l~~lVi 346 (466)
..--||..=+..+..++..+|+.|+++..++........ -.+||..||..-| .+.|.... ......+.+.+.||
T Consensus 127 vNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIV 204 (925)
T PRK12903 127 VNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLI 204 (925)
T ss_pred cchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeee
Confidence 999999999999999999999999999988776554433 3589999999886 23332110 11123577889999
Q ss_pred cccchhh
Q 012319 347 DEADRMI 353 (466)
Q Consensus 347 DEad~ll 353 (466)
||+|.+|
T Consensus 205 DEVDSIL 211 (925)
T PRK12903 205 DEVDSIL 211 (925)
T ss_pred ccchhee
Confidence 9999866
No 143
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.30 E-value=9.8e-06 Score=86.37 Aligned_cols=143 Identities=20% Similarity=0.212 Sum_probs=94.5
Q ss_pred CCcHHHHHHHHHHH--hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 195 EPTPIQKACIPAAA--HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l--~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
.++++|.+.+..++ ..++.+.|..-..|-|||+.. |.+|.++... .+..|| -|||+|-
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~------------------~~~~GP-fLVi~P~ 226 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGR------------------KGIPGP-FLVIAPK 226 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHh------------------cCCCCC-eEEEeeH
Confidence 67888987765543 223348899999999999765 4455555321 223344 5889998
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHH--HHHH-hcCCcEEEeCcHHHHHHHhCCCCccccCCc--ccEEEec
Q 012319 273 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ--ERLL-KARPELVVGTPGRLWELMSGGEKHLVELHT--LSFFVLD 347 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~--~~~l-~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~--l~~lViD 347 (466)
--|. ...++|..++. ++.+++++|....... ...+ ....+|+|+|.+..+.-- ..|.+ -+|||||
T Consensus 227 StL~-NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk-------~~lk~~~W~ylvID 296 (971)
T KOG0385|consen 227 STLD-NWMNEFKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK-------SFLKKFNWRYLVID 296 (971)
T ss_pred hhHH-HHHHHHHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH-------HHHhcCCceEEEec
Confidence 7765 46677887765 6788888887532111 1111 236899999998876431 22333 4799999
Q ss_pred ccchhhccCCHHHHHHHHHhCC
Q 012319 348 EADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 348 Ead~ll~~g~~~~l~~Il~~l~ 369 (466)
|||+|- .....+..++..+.
T Consensus 297 EaHRiK--N~~s~L~~~lr~f~ 316 (971)
T KOG0385|consen 297 EAHRIK--NEKSKLSKILREFK 316 (971)
T ss_pred hhhhhc--chhhHHHHHHHHhc
Confidence 999994 44566778887776
No 144
>COG4889 Predicted helicase [General function prediction only]
Probab=98.27 E-value=4.4e-06 Score=89.94 Aligned_cols=150 Identities=21% Similarity=0.234 Sum_probs=92.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcC---CccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG---KVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 249 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~---~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~ 249 (466)
..|..+.. ..+..++.-..-..|+|+|+.||..++.+= .+--|+. ..|+|||++. |-+.+.+..
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIM-AcGTGKTfTs-LkisEala~---------- 206 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIM-ACGTGKTFTS-LKISEALAA---------- 206 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEE-ecCCCccchH-HHHHHHHhh----------
Confidence 34544433 233334444445689999999999986421 0011322 3589999987 445555532
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHH--------------------H----
Q 012319 250 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE--------------------K---- 305 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~--------------------~---- 305 (466)
.++|+|+|+..|..|..+.+..-. ...++...++++.... .
T Consensus 207 --------------~~iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~ 271 (1518)
T COG4889 207 --------------ARILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSE 271 (1518)
T ss_pred --------------hheEeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHH
Confidence 379999999999999887776532 2355555555443210 0
Q ss_pred -HHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhh
Q 012319 306 -QERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 306 -~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll 353 (466)
..+....+--||++|...|..+-.. ....+..+++||+||||+-.
T Consensus 272 ~~~~~k~~~~~vvFsTYQSl~~i~eA---Qe~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 272 MEHRQKANGLTVVFSTYQSLPRIKEA---QEAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred HHHhhccCCcEEEEEcccchHHHHHH---HHcCCCCccEEEecchhccc
Confidence 0111113457999999888765422 12447888999999999853
No 145
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.19 E-value=7.4e-06 Score=77.36 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHhcCCcc-EEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 196 PTPIQKACIPAAAHQGKVD-IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 196 pt~iQ~~~i~~~l~~~~~d-vl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
+.+-|..++..++... . .+|+||.|||||.+.+ .++..++.... ......+.++||++||..
T Consensus 2 ln~~Q~~Ai~~~~~~~--~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~--------------~~~~~~~~~il~~~~sN~ 64 (236)
T PF13086_consen 2 LNESQREAIQSALSSN--GITLIQGPPGTGKTTTLA-SIIAQLLQRFK--------------SRSADRGKKILVVSPSNA 64 (236)
T ss_dssp --HHHHHHHHHHCTSS--E-EEEE-STTSSHHHHHH-HHHHHH---------------------HCCCSS-EEEEESSHH
T ss_pred CCHHHHHHHHHHHcCC--CCEEEECCCCCChHHHHH-HHHHHhccchh--------------hhhhhccccceeecCCch
Confidence 5789999999987665 6 8999999999995443 34444422100 001234568999999999
Q ss_pred HHHHHHHHHHH
Q 012319 275 LALQVTDHLKE 285 (466)
Q Consensus 275 La~Qv~~~l~~ 285 (466)
.+..+...+.+
T Consensus 65 avd~~~~~l~~ 75 (236)
T PF13086_consen 65 AVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHHC
T ss_pred hHHHHHHHHHh
Confidence 99999998887
No 146
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.18 E-value=1.9e-05 Score=73.61 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=68.5
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
++++-|..++..++.++..-++++|+.|||||.+. -.+...+.. .+.++++++||..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~----------------------~g~~v~~~apT~~ 57 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA----------------------AGKRVIGLAPTNK 57 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH----------------------TT--EEEEESSHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh----------------------CCCeEEEECCcHH
Confidence 36889999999998766535788899999999653 334443322 1358999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCC-CccccCCcccEEEecccchhh
Q 012319 275 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-KHLVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~-~~~~~l~~l~~lViDEad~ll 353 (466)
.+..+.+.+ ++.+ .|-.+++....... .....+....+||||||-.+
T Consensus 58 Aa~~L~~~~-------~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv- 105 (196)
T PF13604_consen 58 AAKELREKT-------GIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV- 105 (196)
T ss_dssp HHHHHHHHH-------TS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG--
T ss_pred HHHHHHHhh-------Ccch------------------------hhHHHHHhcCCcccccccccCCcccEEEEeccccc-
Confidence 888766552 1221 22222211111100 00011456679999999854
Q ss_pred ccCCHHHHHHHHHhCC
Q 012319 354 ENGHFRELQSIIDMLP 369 (466)
Q Consensus 354 ~~g~~~~l~~Il~~l~ 369 (466)
....+..++..+.
T Consensus 106 ---~~~~~~~ll~~~~ 118 (196)
T PF13604_consen 106 ---DSRQLARLLRLAK 118 (196)
T ss_dssp ---BHHHHHHHHHHS-
T ss_pred ---CHHHHHHHHHHHH
Confidence 3556777887776
No 147
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.09 E-value=4.6e-05 Score=81.73 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=90.7
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHh---cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 012319 178 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH---QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 254 (466)
Q Consensus 178 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~---~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 254 (466)
+.+|..|. ..+.++|+.++..+.. ++. --|+.-..|-|||...+. .|..|+..
T Consensus 196 ~~vPg~I~--------~~Lf~yQreGV~WL~~L~~q~~-GGILgDeMGLGKTIQiis-FLaaL~~S-------------- 251 (923)
T KOG0387|consen 196 FKVPGFIW--------SKLFPYQREGVQWLWELYCQRA-GGILGDEMGLGKTIQIIS-FLAALHHS-------------- 251 (923)
T ss_pred ccccHHHH--------HHhhHHHHHHHHHHHHHHhccC-CCeecccccCccchhHHH-HHHHHhhc--------------
Confidence 45666663 3567899998866532 222 337778899999975322 22222211
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHH---------HHHH----HHhcCCcEEEeCc
Q 012319 255 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE---------KQER----LLKARPELVVGTP 321 (466)
Q Consensus 255 ~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~---------~~~~----~l~~~~dIiV~TP 321 (466)
+...-.||||||. .+..|..++|..++. .++|..++|..+.. .... .......|+|+|.
T Consensus 252 -----~k~~~paLIVCP~-Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty 323 (923)
T KOG0387|consen 252 -----GKLTKPALIVCPA-TIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTY 323 (923)
T ss_pred -----ccccCceEEEccH-HHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEeh
Confidence 0111359999996 466788888888764 57888888665521 1111 1112457999998
Q ss_pred HHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 322 GRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 322 ~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
..+.-. .. .+.-..-.|+|+||.|+|-. --..+...+..++
T Consensus 324 ~~~r~~-~d----~l~~~~W~y~ILDEGH~IrN--pns~islackki~ 364 (923)
T KOG0387|consen 324 DGFRIQ-GD----DLLGILWDYVILDEGHRIRN--PNSKISLACKKIR 364 (923)
T ss_pred hhhccc-Cc----ccccccccEEEecCcccccC--CccHHHHHHHhcc
Confidence 776421 10 11112337899999999953 3345555555554
No 148
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.07 E-value=3.5e-05 Score=78.55 Aligned_cols=132 Identities=23% Similarity=0.312 Sum_probs=84.2
Q ss_pred CCcHHHHHHHHHHHhcCC---ccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAAAHQGK---VDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~---~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.+-|+|.+.+..+..+.. .--|+....|.|||...+..++..+ .+...|||+|
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~------------------------~ra~tLVvaP 239 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV------------------------DRAPTLVVAP 239 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc------------------------ccCCeeEEcc
Confidence 567888887755533211 0125677899999977655444422 1234899999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCC----------CccccCCcc
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE----------KHLVELHTL 341 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~----------~~~~~l~~l 341 (466)
+.+| .|..+++..+..+ .+++...+|.... .....+ .++|++.+|...+-....... .....|+++
T Consensus 240 ~VAl-mQW~nEI~~~T~g-slkv~~YhG~~R~-~nikel-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi 315 (791)
T KOG1002|consen 240 TVAL-MQWKNEIERHTSG-SLKVYIYHGAKRD-KNIKEL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSI 315 (791)
T ss_pred HHHH-HHHHHHHHHhccC-ceEEEEEeccccc-CCHHHh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhc
Confidence 9997 5778888777653 4677766765432 222222 368999999998876664311 111236777
Q ss_pred cE--EEecccchhhc
Q 012319 342 SF--FVLDEADRMIE 354 (466)
Q Consensus 342 ~~--lViDEad~ll~ 354 (466)
++ ||+||||.|-+
T Consensus 316 ~~~RiIlDEAH~IK~ 330 (791)
T KOG1002|consen 316 KFYRIILDEAHNIKD 330 (791)
T ss_pred eeeeeehhhhccccc
Confidence 65 89999998754
No 149
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.05 E-value=9.9e-05 Score=80.49 Aligned_cols=163 Identities=15% Similarity=0.124 Sum_probs=102.7
Q ss_pred CCcHHHHHHHHHHHhc--------CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEE
Q 012319 195 EPTPIQKACIPAAAHQ--------GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 266 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~--------~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 266 (466)
.+.|+|++.+.-+... +..-.|+.-..|+|||+.. ++++..+++.. +.....--++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~---------------P~~~~~~~k~ 301 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQF---------------PQAKPLINKP 301 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhC---------------cCcccccccc
Confidence 5789999998766321 1112344445699999887 44555555431 1111122578
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCH--HHHHHHHh-----cCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 267 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST--EKQERLLK-----ARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 267 Lil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~--~~~~~~l~-----~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
|||+| ..|+.-..++|.++.....+....++|..+. ......+. -..-|+|.+.+.+.+.+.. +.+.
T Consensus 302 lVV~P-~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~ 375 (776)
T KOG0390|consen 302 LVVAP-SSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLI 375 (776)
T ss_pred EEEcc-HHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcC
Confidence 99999 5678888999998866546667777777764 11111111 1245778888888765532 4567
Q ss_pred cccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 340 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 340 ~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
.+.+||+||.|++= .--..+...+..+. -++-|++|.|+-
T Consensus 376 ~~glLVcDEGHrlk--N~~s~~~kaL~~l~-------------------------t~rRVLLSGTp~ 415 (776)
T KOG0390|consen 376 RPGLLVCDEGHRLK--NSDSLTLKALSSLK-------------------------TPRRVLLTGTPI 415 (776)
T ss_pred CCCeEEECCCCCcc--chhhHHHHHHHhcC-------------------------CCceEEeeCCcc
Confidence 88999999999984 23334445555553 355678899985
No 150
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.03 E-value=8.5e-05 Score=84.61 Aligned_cols=139 Identities=22% Similarity=0.172 Sum_probs=90.7
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
.-+|+=-||||||++.+- +...++.. ...|.++||+-.++|-.|+.+.|..+.......
T Consensus 275 ~G~IWHtqGSGKTlTm~~-~A~~l~~~--------------------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~ 333 (962)
T COG0610 275 GGYIWHTQGSGKTLTMFK-LARLLLEL--------------------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFND 333 (962)
T ss_pred ceEEEeecCCchHHHHHH-HHHHHHhc--------------------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhc
Confidence 468888899999988533 22233221 346799999999999999999999986543221
Q ss_pred EEEEECCCCHHHHHHHHhcC-CcEEEeCcHHHHHHHhCCCCccccCCcc-cEEEecccchhhccCCHHHHHHHHHhCCCC
Q 012319 294 VVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTL-SFFVLDEADRMIENGHFRELQSIIDMLPMT 371 (466)
Q Consensus 294 v~~~~gg~~~~~~~~~l~~~-~dIiV~TP~~L~~~l~~~~~~~~~l~~l-~~lViDEad~ll~~g~~~~l~~Il~~l~~~ 371 (466)
. ...+...-.+.+... ..|||+|-..|-..+..... ..+.+- -+||+||||+-- ++..-..+...++
T Consensus 334 ~----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~--~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~-- 402 (962)
T COG0610 334 P----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDEL--ELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK-- 402 (962)
T ss_pred c----cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccc--cccCCCcEEEEEechhhcc---ccHHHHHHHHHhc--
Confidence 1 334444555556544 48999999999887754311 112222 367899999853 3333333344443
Q ss_pred CCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 372 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
+...++||.|.-.
T Consensus 403 -----------------------~a~~~gFTGTPi~ 415 (962)
T COG0610 403 -----------------------KAIFIGFTGTPIF 415 (962)
T ss_pred -----------------------cceEEEeeCCccc
Confidence 4688999999853
No 151
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.02 E-value=2.7e-06 Score=86.55 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=95.1
Q ss_pred CCCcHHHHHHHHHHHhcCC-ccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 194 KEPTPIQKACIPAAAHQGK-VDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~~~~-~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
..++|+|..++..++-+++ +.-|+..|-|+|||++-+-.+. .+ ..++|||+.+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti-------------------------kK~clvLcts 354 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI-------------------------KKSCLVLCTS 354 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee-------------------------cccEEEEecC
Confidence 4689999999999986553 3568899999999987544332 22 2369999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCC-----CccccCCcccEEEec
Q 012319 273 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-----KHLVELHTLSFFVLD 347 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~-----~~~~~l~~l~~lViD 347 (466)
---+.|....|..++---.-.++.++.... .....++.|+|+|..++..--.+.. ...+.-..-.++|+|
T Consensus 355 ~VSVeQWkqQfk~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllD 429 (776)
T KOG1123|consen 355 AVSVEQWKQQFKQWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLD 429 (776)
T ss_pred ccCHHHHHHHHHhhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEee
Confidence 989999999998887544556666665432 2244678999999887643111100 001112345789999
Q ss_pred ccchhhccCCHHHHHHHHH
Q 012319 348 EADRMIENGHFRELQSIID 366 (466)
Q Consensus 348 Ead~ll~~g~~~~l~~Il~ 366 (466)
|+|.+-. .++..+..|+.
T Consensus 430 EVHvvPA-~MFRRVlsiv~ 447 (776)
T KOG1123|consen 430 EVHVVPA-KMFRRVLSIVQ 447 (776)
T ss_pred hhccchH-HHHHHHHHHHH
Confidence 9998863 35566666653
No 152
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.99 E-value=2e-05 Score=87.47 Aligned_cols=130 Identities=22% Similarity=0.271 Sum_probs=95.4
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.|+++|.-.--.+ +.|+ |+-..||=|||++..||++-..+. |..|-||+..--
T Consensus 138 ~~ydVQLiGgivL-h~G~---IAEM~TGEGKTLvatlp~yLnAL~-----------------------G~gVHvVTvNDY 190 (1025)
T PRK12900 138 VPYDVQLIGGIVL-HSGK---ISEMATGEGKTLVSTLPTFLNALT-----------------------GRGVHVVTVNDY 190 (1025)
T ss_pred cccchHHhhhHHh-hcCC---ccccCCCCCcchHhHHHHHHHHHc-----------------------CCCcEEEeechH
Confidence 5777776554444 6664 789999999999999998765543 345888888889
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCC---CCccccCCcccEEEecccc
Q 012319 275 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGG---EKHLVELHTLSFFVLDEAD 350 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~---~~~~~~l~~l~~lViDEad 350 (466)
||..=++++..++..+|+.|+++..+.+.... .-.-.+||..||..-| .+.|... ...-...+.+.|.||||+|
T Consensus 191 LA~RDaewm~p~y~flGLtVg~i~~~~~~~~R--r~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 191 LAQRDKEWMNPVFEFHGLSVGVILNTMRPEER--REQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred hhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHH--HHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 99999999999999999999999877666543 3345689999998776 2222111 0111235778899999999
Q ss_pred hhh
Q 012319 351 RMI 353 (466)
Q Consensus 351 ~ll 353 (466)
.+|
T Consensus 269 SvL 271 (1025)
T PRK12900 269 SVL 271 (1025)
T ss_pred hhh
Confidence 865
No 153
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.94 E-value=7.4e-05 Score=69.72 Aligned_cols=188 Identities=16% Similarity=0.204 Sum_probs=85.7
Q ss_pred CCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 012319 194 KEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 273 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 273 (466)
...++-|..++..+++.. -+++.||.|||||+..+..+++.+... ..-+++|+-|+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~--~v~~~G~AGTGKT~LA~a~Al~~v~~g---------------------~~~kiii~Rp~v 59 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNND--LVIVNGPAGTGKTFLALAAALELVKEG---------------------EYDKIIITRPPV 59 (205)
T ss_dssp ---SHHHHHHHHHHHH-S--EEEEE--TTSSTTHHHHHHHHHHHHTT---------------------S-SEEEEEE-S-
T ss_pred cCCCHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHHHHhC---------------------CCcEEEEEecCC
Confidence 346889999999997444 889999999999999988888887531 123678887876
Q ss_pred HHHHHHH-------HHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEe
Q 012319 274 ELALQVT-------DHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 346 (466)
Q Consensus 274 eLa~Qv~-------~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lVi 346 (466)
+....+- +.+.-++..+--....+.+... ...+.....|-+..+..+. | ..|.+ .+|||
T Consensus 60 ~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~iR-----G----rt~~~-~~iIv 125 (205)
T PF02562_consen 60 EAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEK----LEELIQNGKIEIEPLAFIR-----G----RTFDN-AFIIV 125 (205)
T ss_dssp -TT----SS---------TTTHHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGGT-----T------B-S-EEEEE
T ss_pred CCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhhhc-----C----ccccc-eEEEE
Confidence 5311110 0000000000000000001111 1112223445555543331 1 22332 79999
Q ss_pred cccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhhccccccccc
Q 012319 347 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSV 426 (466)
Q Consensus 347 DEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~~~~~~~~~~ 426 (466)
|||..+. ..++..|+.++. ...++|++--.-- .+....
T Consensus 126 DEaQN~t----~~~~k~ilTR~g------------------------~~skii~~GD~~Q--~D~~~~------------ 163 (205)
T PF02562_consen 126 DEAQNLT----PEELKMILTRIG------------------------EGSKIIITGDPSQ--IDLPLD------------ 163 (205)
T ss_dssp -SGGG------HHHHHHHHTTB-------------------------TT-EEEEEE------------------------
T ss_pred ecccCCC----HHHHHHHHcccC------------------------CCcEEEEecCcee--ecCCCC------------
Confidence 9998763 567888888876 5667776643321 111100
Q ss_pred CccccHHHHHHHhCCcccceEEecCchhhHhhhhh
Q 012319 427 NGLNSIETLSERAGMRANVAIVDLTNVSVLANKLE 461 (466)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~iidl~~~~~~~~~l~ 461 (466)
....+..+.+++.-.+.+.+|.++....+...|.
T Consensus 164 -~~nGl~~~~~~~~~~~~~~~i~l~~~d~vRs~l~ 197 (205)
T PF02562_consen 164 -YNNGLTYAIERLKGEPGIGVIELTLEDIVRSPLA 197 (205)
T ss_dssp -----THHHHHHTTT-TTEEEEE--GGG----HHH
T ss_pred -CCchHHHHHHHhcCCCceEEEEEeCCceECcHHH
Confidence 1123556666665567889999987655554443
No 154
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.92 E-value=2e-05 Score=82.34 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.+.+-|..|+..+++.+. -++++||.|+|||.+...-+.+.+.. +-++||++||..
T Consensus 185 ~ln~SQk~Av~~~~~~k~-l~~I~GPPGTGKT~TlvEiI~qlvk~-----------------------~k~VLVcaPSn~ 240 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKD-LLIIHGPPGTGKTRTLVEIISQLVKQ-----------------------KKRVLVCAPSNV 240 (649)
T ss_pred cccHHHHHHHHHHhccCC-ceEeeCCCCCCceeeHHHHHHHHHHc-----------------------CCeEEEEcCchH
Confidence 578899999999877664 78999999999999887766555532 348999999999
Q ss_pred HHHHHHHHHH
Q 012319 275 LALQVTDHLK 284 (466)
Q Consensus 275 La~Qv~~~l~ 284 (466)
.+.-+.+.+.
T Consensus 241 AVdNiverl~ 250 (649)
T KOG1803|consen 241 AVDNIVERLT 250 (649)
T ss_pred HHHHHHHHhc
Confidence 8888887644
No 155
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.83 E-value=0.00013 Score=74.68 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=96.1
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 193 FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 193 ~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
+..+.|+|...+..+|..|+ .+++.-..|-|||+.++.- ...|+. .. -.||+||.
T Consensus 196 vs~LlPFQreGv~faL~RgG-R~llADeMGLGKTiQAlaI--A~yyra---------------------Ew-plliVcPA 250 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGG-RILLADEMGLGKTIQALAI--ARYYRA---------------------EW-PLLIVCPA 250 (689)
T ss_pred HHhhCchhhhhHHHHHhcCC-eEEEecccccchHHHHHHH--HHHHhh---------------------cC-cEEEEecH
Confidence 44678999999999888887 9999999999999876432 222221 12 27888985
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchh
Q 012319 273 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~l 352 (466)
. |-....+.|..++.... .+.++.++.+.... +-....|.|.+...|..+-.. ..-....+||+||.|.|
T Consensus 251 s-vrftWa~al~r~lps~~-pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH~L 320 (689)
T KOG1000|consen 251 S-VRFTWAKALNRFLPSIH-PIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESHML 320 (689)
T ss_pred H-HhHHHHHHHHHhccccc-ceEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH-----HhcccceEEEEechhhh
Confidence 3 33445556665544322 24455555433211 112356889998887544321 11234789999999987
Q ss_pred hccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 353 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 353 l~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
- .+--.....++..+. .-..+|++|.|.+.
T Consensus 321 k-~sktkr~Ka~~dllk------------------------~akhvILLSGTPav 350 (689)
T KOG1000|consen 321 K-DSKTKRTKAATDLLK------------------------VAKHVILLSGTPAV 350 (689)
T ss_pred h-ccchhhhhhhhhHHH------------------------HhhheEEecCCccc
Confidence 5 333444455544443 34578888988764
No 156
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.81 E-value=5.2e-05 Score=84.33 Aligned_cols=130 Identities=21% Similarity=0.233 Sum_probs=93.2
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.|+++|.-.--.+ +.|+ |+-..||=|||++..+|+.-..+. |..|-||+..--
T Consensus 169 ~~yDVQliGgivL-h~G~---IAEM~TGEGKTLvAtlp~yLnAL~-----------------------GkgVHvVTVNDY 221 (1112)
T PRK12901 169 VHYDVQLIGGVVL-HQGK---IAEMATGEGKTLVATLPVYLNALT-----------------------GNGVHVVTVNDY 221 (1112)
T ss_pred cccchHHhhhhhh-cCCc---eeeecCCCCchhHHHHHHHHHHHc-----------------------CCCcEEEEechh
Confidence 4667775544333 6664 789999999999999998766653 345888888899
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEC-CCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCC---CCccccCCcccEEEeccc
Q 012319 275 LALQVTDHLKEVAKGINVRVVPIVG-GMSTEKQERLLKARPELVVGTPGRL-WELMSGG---EKHLVELHTLSFFVLDEA 349 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~~~~v~~~~g-g~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~---~~~~~~l~~l~~lViDEa 349 (466)
||..=++.+..++..+|+.|+++.. +.+... +.-.-.+||..||..-| .+.|... ...-...+.+.|.||||+
T Consensus 222 LA~RDaewmgply~fLGLsvg~i~~~~~~~~~--rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEv 299 (1112)
T PRK12901 222 LAKRDSEWMGPLYEFHGLSVDCIDKHQPNSEA--RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEV 299 (1112)
T ss_pred hhhccHHHHHHHHHHhCCceeecCCCCCCHHH--HHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeech
Confidence 9999999999999999999998866 444433 33345689999998776 2222111 011123567889999999
Q ss_pred chhh
Q 012319 350 DRMI 353 (466)
Q Consensus 350 d~ll 353 (466)
|.+|
T Consensus 300 DSIL 303 (1112)
T PRK12901 300 DSVL 303 (1112)
T ss_pred hhhh
Confidence 9865
No 157
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.81 E-value=0.00022 Score=79.21 Aligned_cols=141 Identities=19% Similarity=0.221 Sum_probs=88.5
Q ss_pred CCcHHHHHHHHHHH--hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 195 EPTPIQKACIPAAA--HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l--~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
.++.+|...+..+. ..++.|-|+.-..|-|||..- |.+|.|+..... .=|| -||||||
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeeg------------------nWGP-HLIVVpT 674 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEG------------------NWGP-HLIVVPT 674 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhccc------------------CCCC-ceEEeec
Confidence 46778888776542 233336788899999999765 556666643321 1123 5899999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh---cCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEeccc
Q 012319 273 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK---ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 349 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~---~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEa 349 (466)
--+.+ .-=+|+.+|. +++|..++|........+.-. +..||.|++.-.+.+-+. .+.-..-.|||||||
T Consensus 675 sviLn-WEMElKRwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~-----AFkrkrWqyLvLDEa 746 (1958)
T KOG0391|consen 675 SVILN-WEMELKRWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT-----AFKRKRWQYLVLDEA 746 (1958)
T ss_pred hhhhh-hhHHHhhhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH-----HHHhhccceeehhhh
Confidence 76433 3446777765 778988998754322222111 236899999777655442 233455689999999
Q ss_pred chhhccCCH-HHHHHHH
Q 012319 350 DRMIENGHF-RELQSII 365 (466)
Q Consensus 350 d~ll~~g~~-~~l~~Il 365 (466)
|+|- +|. .+++.++
T Consensus 747 qnIK--nfksqrWQAll 761 (1958)
T KOG0391|consen 747 QNIK--NFKSQRWQALL 761 (1958)
T ss_pred hhhc--chhHHHHHHHh
Confidence 9984 443 3444444
No 158
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.78 E-value=9.4e-05 Score=79.36 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=88.2
Q ss_pred CcHHHHHHHHHH--HhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 012319 196 PTPIQKACIPAA--AHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 273 (466)
Q Consensus 196 pt~iQ~~~i~~~--l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 273 (466)
+-++|.-.+..+ +...+.+-|+.-..|-|||... +..+..|... +.+|| -|||||.-
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~-------------------g~~gp-HLVVvPsS 458 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQI-------------------GNPGP-HLVVVPSS 458 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHc-------------------CCCCC-cEEEecch
Confidence 677887665433 3444457788999999999543 4445555322 23444 58999987
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEeccc
Q 012319 274 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 349 (466)
Q Consensus 274 eLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEa 349 (466)
.|-+ ..++|.++|. .++|...+|......+.+... ...+|||+|...... +...+.++.-.++.++|+||+
T Consensus 459 TleN-WlrEf~kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~--~kdDRsflk~~~~n~viyDEg 533 (941)
T KOG0389|consen 459 TLEN-WLREFAKWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAAS--SKDDRSFLKNQKFNYVIYDEG 533 (941)
T ss_pred hHHH-HHHHHHHhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccC--ChHHHHHHHhccccEEEecch
Confidence 7643 4555666654 678888898875444433332 268999999654321 111223344567899999999
Q ss_pred chhhccC--CHHHHHHH
Q 012319 350 DRMIENG--HFRELQSI 364 (466)
Q Consensus 350 d~ll~~g--~~~~l~~I 364 (466)
|.|-++. +|.+++.|
T Consensus 534 HmLKN~~SeRy~~LM~I 550 (941)
T KOG0389|consen 534 HMLKNRTSERYKHLMSI 550 (941)
T ss_pred hhhhccchHHHHHhccc
Confidence 9775443 34444444
No 159
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.76 E-value=0.0005 Score=74.33 Aligned_cols=135 Identities=21% Similarity=0.305 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHH
Q 012319 197 TPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 276 (466)
Q Consensus 197 t~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa 276 (466)
.++|+.++-.++.++ -+++.|+.|||||.+. ..++..+.... ...+.+++++++||--.|
T Consensus 147 ~~~Qk~A~~~al~~~--~~vitGgpGTGKTt~v-~~ll~~l~~~~-----------------~~~~~~~I~l~APTGkAA 206 (586)
T TIGR01447 147 QNWQKVAVALALKSN--FSLITGGPGTGKTTTV-ARLLLALVKQS-----------------PKQGKLRIALAAPTGKAA 206 (586)
T ss_pred cHHHHHHHHHHhhCC--eEEEEcCCCCCHHHHH-HHHHHHHHHhc-----------------cccCCCcEEEECCcHHHH
Confidence 379999998887655 8899999999999764 22333332210 011135799999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCc---cccCCcccEEEecccchhh
Q 012319 277 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH---LVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 277 ~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~---~~~l~~l~~lViDEad~ll 353 (466)
..+.+.+......+... . . ......+-..|-.+|+......... ....-.+++||||||= |+
T Consensus 207 ~rL~e~~~~~~~~l~~~---------~-~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS-Mv 271 (586)
T TIGR01447 207 ARLAESLRKAVKNLAAA---------E-A----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS-MV 271 (586)
T ss_pred HHHHHHHHhhhcccccc---------h-h----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc-cC
Confidence 88877765543222110 0 0 0111112244544444332110000 0123357899999996 33
Q ss_pred ccCCHHHHHHHHHhCC
Q 012319 354 ENGHFRELQSIIDMLP 369 (466)
Q Consensus 354 ~~g~~~~l~~Il~~l~ 369 (466)
-...+..|+..++
T Consensus 272 ---d~~l~~~ll~al~ 284 (586)
T TIGR01447 272 ---DLPLMAKLLKALP 284 (586)
T ss_pred ---CHHHHHHHHHhcC
Confidence 3456777787776
No 160
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.75 E-value=0.00011 Score=74.93 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=67.9
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
-+||.|..|||||+..+ .++..+.. ...+.+++++++...|...+...+.....
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~--------------------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQN--------------------SEEGKKVLYLCGNHPLRNKLREQLAKKYN----- 56 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhc--------------------cccCCceEEEEecchHHHHHHHHHhhhcc-----
Confidence 67999999999997763 33333310 11245799999999999988887765420
Q ss_pred EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccC-------CHHHHHHHHH
Q 012319 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG-------HFRELQSIID 366 (466)
Q Consensus 294 v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g-------~~~~l~~Il~ 366 (466)
.......|..|..++..+. .........++|||||||+|.+.+ ...+|..|++
T Consensus 57 -----------------~~~~~~~~~~~~~~i~~~~---~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~ 116 (352)
T PF09848_consen 57 -----------------PKLKKSDFRKPTSFINNYS---ESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIK 116 (352)
T ss_pred -----------------cchhhhhhhhhHHHHhhcc---cccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHh
Confidence 0011234445555544332 111345778999999999998732 2356666665
Q ss_pred h
Q 012319 367 M 367 (466)
Q Consensus 367 ~ 367 (466)
.
T Consensus 117 ~ 117 (352)
T PF09848_consen 117 R 117 (352)
T ss_pred c
Confidence 4
No 161
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.73 E-value=0.00038 Score=68.14 Aligned_cols=174 Identities=18% Similarity=0.213 Sum_probs=107.2
Q ss_pred ccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHh-------c-CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhh
Q 012319 176 NELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH-------Q-GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 247 (466)
Q Consensus 176 ~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~-------~-~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~ 247 (466)
-.+.|+..++. .| .++..|.+++-.+.. + .+.-.++--.||.||.-...--|+.++++.
T Consensus 24 y~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 45577776643 23 478899888765532 1 122567777899999877666667776532
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHH
Q 012319 248 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 327 (466)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~ 327 (466)
+.++|+|+.+-.|-....+.+..+... .+.+..+..- ... ....-.-.||++|...|...
T Consensus 91 ---------------r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~---~~~~~~~GvlF~TYs~L~~~ 150 (303)
T PF13872_consen 91 ---------------RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYG---DIIRLKEGVLFSTYSTLISE 150 (303)
T ss_pred ---------------CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccC---cCCCCCCCccchhHHHHHhH
Confidence 447999999999999999999988643 3333332211 000 00112346999999888776
Q ss_pred HhCCCCccccCCc---------ccEEEecccchhhccCC--------HHHHHHHHHhCCCCCCCCCCCccccchhhhhcc
Q 012319 328 MSGGEKHLVELHT---------LSFFVLDEADRMIENGH--------FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 390 (466)
Q Consensus 328 l~~~~~~~~~l~~---------l~~lViDEad~ll~~g~--------~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~ 390 (466)
-..+......|.+ =.+||+||||.+-.... ...+..+-+.||
T Consensus 151 ~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP--------------------- 209 (303)
T PF13872_consen 151 SQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP--------------------- 209 (303)
T ss_pred HhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC---------------------
Confidence 4321111111111 14899999998754322 134444555565
Q ss_pred cCCCCceEEEEeeecCC
Q 012319 391 LQRKKRQTLVFSATIAL 407 (466)
Q Consensus 391 ~~~~~~Q~ll~SATl~~ 407 (466)
.-++|-+|||-..
T Consensus 210 ----~ARvvY~SATgas 222 (303)
T PF13872_consen 210 ----NARVVYASATGAS 222 (303)
T ss_pred ----CCcEEEecccccC
Confidence 4568999999863
No 162
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.71 E-value=0.0002 Score=75.52 Aligned_cols=83 Identities=12% Similarity=0.156 Sum_probs=60.9
Q ss_pred HHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEE
Q 012319 188 IYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 267 (466)
Q Consensus 188 l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 267 (466)
+...++..+..-|..|+.++|... -.|+++|.|+|||.+-.--+++.+ +. +...+|
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rp--lsLIQGPPGTGKTvtsa~IVyhl~-~~---------------------~~~~VL 458 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRP--LSLIQGPPGTGKTVTSATIVYHLA-RQ---------------------HAGPVL 458 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCC--ceeeecCCCCCceehhHHHHHHHH-Hh---------------------cCCceE
Confidence 344667788999999999996544 889999999999987644343333 21 133699
Q ss_pred EEeCcHHHHHHHHHHHHHHHcCCCcEEEEEE
Q 012319 268 IITPTRELALQVTDHLKEVAKGINVRVVPIV 298 (466)
Q Consensus 268 il~PtreLa~Qv~~~l~~l~~~~~~~v~~~~ 298 (466)
+++|+.-.+.|++..+.+. +++|+-+.
T Consensus 459 vcApSNiAVDqLaeKIh~t----gLKVvRl~ 485 (935)
T KOG1802|consen 459 VCAPSNIAVDQLAEKIHKT----GLKVVRLC 485 (935)
T ss_pred EEcccchhHHHHHHHHHhc----CceEeeee
Confidence 9999999998988877664 56655443
No 163
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.70 E-value=0.0004 Score=76.01 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 012319 194 KEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 273 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 273 (466)
..+++.|..++..++.... .+++.||+|||||.+.. .++.++... +.++|+++||.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~-~~lI~GpPGTGKT~t~~-~ii~~~~~~----------------------g~~VLv~a~sn 211 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKD-LFLIHGPPGTGKTRTLV-ELIRQLVKR----------------------GLRVLVTAPSN 211 (637)
T ss_pred CCCCHHHHHHHHHHhcCCC-eEEEEcCCCCCHHHHHH-HHHHHHHHc----------------------CCCEEEEcCcH
Confidence 3679999999999876644 88999999999996653 334333321 34899999999
Q ss_pred HHHHHHHHHHHH
Q 012319 274 ELALQVTDHLKE 285 (466)
Q Consensus 274 eLa~Qv~~~l~~ 285 (466)
..+.++.+.+..
T Consensus 212 ~Avd~l~e~l~~ 223 (637)
T TIGR00376 212 IAVDNLLERLAL 223 (637)
T ss_pred HHHHHHHHHHHh
Confidence 999999888876
No 164
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.69 E-value=0.0004 Score=75.30 Aligned_cols=134 Identities=23% Similarity=0.305 Sum_probs=77.7
Q ss_pred cHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHH
Q 012319 197 TPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 276 (466)
Q Consensus 197 t~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa 276 (466)
.++|+.|+-.++.++ -+++.|+.|||||.+.. -++..+... ......++++++||...|
T Consensus 154 ~d~Qk~Av~~a~~~~--~~vItGgpGTGKTt~v~-~ll~~l~~~------------------~~~~~~~i~l~APTgkAA 212 (615)
T PRK10875 154 VDWQKVAAAVALTRR--ISVISGGPGTGKTTTVA-KLLAALIQL------------------ADGERCRIRLAAPTGKAA 212 (615)
T ss_pred CHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHH-HHHHHHHHh------------------cCCCCcEEEEECCcHHHH
Confidence 589999998886654 88999999999997642 233333221 011235789999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCC---ccccCCcccEEEecccchhh
Q 012319 277 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK---HLVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 277 ~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~---~~~~l~~l~~lViDEad~ll 353 (466)
.++.+.+.......++. .. .......-..|-.+|+........ .....-.+++||||||-. +
T Consensus 213 ~rL~e~~~~~~~~~~~~-----------~~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSM-v 277 (615)
T PRK10875 213 ARLTESLGKALRQLPLT-----------DE---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASM-V 277 (615)
T ss_pred HHHHHHHHhhhhccccc-----------hh---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhc-c
Confidence 99888776544322211 00 001111123343333322111100 011233468999999963 2
Q ss_pred ccCCHHHHHHHHHhCC
Q 012319 354 ENGHFRELQSIIDMLP 369 (466)
Q Consensus 354 ~~g~~~~l~~Il~~l~ 369 (466)
-...+..++..++
T Consensus 278 ---d~~lm~~ll~al~ 290 (615)
T PRK10875 278 ---DLPMMARLIDALP 290 (615)
T ss_pred ---cHHHHHHHHHhcc
Confidence 4566777888876
No 165
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.66 E-value=0.00039 Score=75.66 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=53.3
Q ss_pred CCcHHHHHHHHHHHh---cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhh---hh-----------hhh--hh
Q 012319 195 EPTPIQKACIPAAAH---QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML---EE-----------KGE--EA 255 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~---~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~---~~-----------~~~--~~ 255 (466)
.|++.|...+-.++. ... +.++-+|||+|||++.+-..|........+..... +. .++ .+
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q-~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQ-NGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhh-hhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 689999776655543 333 88999999999999865554443322221110000 00 000 00
Q ss_pred hh---cCCCCCeEEEEEeCcHHHHHHHHHHHHHHH
Q 012319 256 EK---YAPKGHLRALIITPTRELALQVTDHLKEVA 287 (466)
Q Consensus 256 ~~---~~~~~~~~vLil~PtreLa~Qv~~~l~~l~ 287 (466)
.. -...+.|++.|-.-|..-..|+.++++...
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 01 111246788888888877778888887653
No 166
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.62 E-value=0.00028 Score=78.93 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=96.8
Q ss_pred CcHHHHHHHHHH--HhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 012319 196 PTPIQKACIPAA--AHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 273 (466)
Q Consensus 196 pt~iQ~~~i~~~--l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 273 (466)
++.+|++.+..+ |+..+-+-|.|--.|-|||+..+--+....++++. +...+.+.-.|||||.
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s--------------~~~e~~~~PSLIVCPs- 1040 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRS--------------ESSEFNRLPSLIVCPS- 1040 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcc--------------cchhhccCCeEEECCc-
Confidence 456788776433 34444467999999999999865444444544422 1223334458999994
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhh
Q 012319 274 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 274 eLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll 353 (466)
.|+-....++.+++.. +++...+|+-......+.-.++.+|||++...+.+-+.. +.-....|.|+||-|-|-
T Consensus 1041 TLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~-----l~~~~wNYcVLDEGHVik 1113 (1549)
T KOG0392|consen 1041 TLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY-----LIKIDWNYCVLDEGHVIK 1113 (1549)
T ss_pred hhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH-----HHhcccceEEecCcceec
Confidence 6888888889888765 566666676555444444445679999999888643311 111234689999999873
Q ss_pred ccCCHHHHHHHHHhCC
Q 012319 354 ENGHFRELQSIIDMLP 369 (466)
Q Consensus 354 ~~g~~~~l~~Il~~l~ 369 (466)
+-...+..-.+.|.
T Consensus 1114 --N~ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1114 --NSKTKLTKAVKQLR 1127 (1549)
T ss_pred --chHHHHHHHHHHHh
Confidence 34455555555554
No 167
>PRK10536 hypothetical protein; Provisional
Probab=97.61 E-value=0.0033 Score=60.54 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=35.7
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHH
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
.++...+..|...+..+. ... .+++.|++|||||+..+..+++.++
T Consensus 55 ~~i~p~n~~Q~~~l~al~-~~~-lV~i~G~aGTGKT~La~a~a~~~l~ 100 (262)
T PRK10536 55 SPILARNEAQAHYLKAIE-SKQ-LIFATGEAGCGKTWISAAKAAEALI 100 (262)
T ss_pred ccccCCCHHHHHHHHHHh-cCC-eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 455566888888888774 444 8899999999999988777776664
No 168
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.58 E-value=0.00023 Score=77.69 Aligned_cols=143 Identities=16% Similarity=0.209 Sum_probs=88.7
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
-.++.||.|||||.+..-++-..+ .....++|+|+-.|.|+.++...|....- .++.
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l----------------------~~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv 107 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDAL----------------------KNPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFV 107 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhc----------------------cCCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccce
Confidence 778999999999977755443332 12245899999999999999999976421 1222
Q ss_pred EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCH-------HHHHHHHH
Q 012319 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF-------RELQSIID 366 (466)
Q Consensus 294 v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~-------~~l~~Il~ 366 (466)
...-.++.... ....+-+++....|+++-. ..+.+.++|||||+...+.. ++ ..+..++.
T Consensus 108 ~Y~d~~~~~i~------~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L~ 174 (824)
T PF02399_consen 108 NYLDSDDYIID------GRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLLK 174 (824)
T ss_pred eeecccccccc------ccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHHH
Confidence 21111111000 0134677888888876542 23677899999999987743 32 12222222
Q ss_pred hCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC-HHHHHHH
Q 012319 367 MLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRKKL 415 (466)
Q Consensus 367 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~-~~~~~~l 415 (466)
.+- +.-..+|++-||+... .+|+..+
T Consensus 175 ~lI-----------------------~~ak~VI~~DA~ln~~tvdFl~~~ 201 (824)
T PF02399_consen 175 ELI-----------------------RNAKTVIVMDADLNDQTVDFLASC 201 (824)
T ss_pred HHH-----------------------HhCCeEEEecCCCCHHHHHHHHHh
Confidence 221 1345789999999753 4666665
No 169
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.52 E-value=0.00023 Score=75.53 Aligned_cols=143 Identities=22% Similarity=0.188 Sum_probs=85.1
Q ss_pred CCcHHHHHHHHHHHhcC---CccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAAAHQG---KVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~---~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.+-|+|..++..++... ..--|+....|-|||++.+-.++..=...+... + ++... . ..|||||
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~-----~------~~~~a-~-~TLII~P 391 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKARE-----K------KGESA-S-KTLIICP 391 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhc-----c------ccccc-C-CeEEeCc
Confidence 46789999887765311 002366777899999876544443322211110 0 11111 1 4899999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHH----HHhCCCCccccCCcc--cEEE
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE----LMSGGEKHLVELHTL--SFFV 345 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~----~l~~~~~~~~~l~~l--~~lV 345 (466)
- .|..|...++......-.++|++++|....+-. ......+||||+|..-+.. -+.. ......|..| ..||
T Consensus 392 a-Sli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~-~~~L~~YDvViTTY~lva~~~~~e~~~-~~~~spL~~I~W~RVI 468 (901)
T KOG4439|consen 392 A-SLIHQWEAEVARRLEQNALSVYLYHGPNKREIS-AKELRKYDVVITTYNLVANKPDDELEE-GKNSSPLARIAWSRVI 468 (901)
T ss_pred H-HHHHHHHHHHHHHHhhcceEEEEecCCccccCC-HHHHhhcceEEEeeeccccCCchhhhc-ccCccHHHHhhHHHhh
Confidence 5 577888888877766667889888887642222 2223468999999765543 1111 1111224445 4589
Q ss_pred ecccchhh
Q 012319 346 LDEADRMI 353 (466)
Q Consensus 346 iDEad~ll 353 (466)
+||||.+-
T Consensus 469 LDEAH~Ir 476 (901)
T KOG4439|consen 469 LDEAHNIR 476 (901)
T ss_pred hhhhhhhc
Confidence 99999874
No 170
>PF13245 AAA_19: Part of AAA domain
Probab=97.47 E-value=0.0006 Score=53.30 Aligned_cols=61 Identities=26% Similarity=0.378 Sum_probs=40.4
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 282 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~ 282 (466)
+|...+.+++ -+++.||.|||||...+ .++.+++..+ ... +-++||++||+..+..+.+.
T Consensus 2 av~~al~~~~-~~vv~g~pGtGKT~~~~-~~i~~l~~~~-----------------~~~-~~~vlv~a~t~~aa~~l~~r 61 (76)
T PF13245_consen 2 AVRRALAGSP-LFVVQGPPGTGKTTTLA-ARIAELLAAR-----------------ADP-GKRVLVLAPTRAAADELRER 61 (76)
T ss_pred HHHHHHhhCC-eEEEECCCCCCHHHHHH-HHHHHHHHHh-----------------cCC-CCeEEEECCCHHHHHHHHHH
Confidence 3443335332 56669999999996653 3444443221 111 45899999999999999888
Q ss_pred H
Q 012319 283 L 283 (466)
Q Consensus 283 l 283 (466)
+
T Consensus 62 l 62 (76)
T PF13245_consen 62 L 62 (76)
T ss_pred H
Confidence 8
No 171
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.41 E-value=0.0025 Score=70.89 Aligned_cols=67 Identities=24% Similarity=0.213 Sum_probs=46.7
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
.++ .+++-|+.++..++..+ .+++.++.|||||.+. -.++..+... .....+++++
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~--~~iitGgpGTGKTt~l-~~i~~~~~~~--------------------~~~~~v~l~A 375 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHK--VVILTGGPGTGKTTIT-RAIIELAEEL--------------------GGLLPVGLAA 375 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCC--eEEEECCCCCCHHHHH-HHHHHHHHHc--------------------CCCceEEEEe
Confidence 454 78999999999986544 8999999999999654 2233332110 0114688899
Q ss_pred CcHHHHHHHHH
Q 012319 271 PTRELALQVTD 281 (466)
Q Consensus 271 PtreLa~Qv~~ 281 (466)
||-..|.++.+
T Consensus 376 pTg~AA~~L~e 386 (720)
T TIGR01448 376 PTGRAAKRLGE 386 (720)
T ss_pred CchHHHHHHHH
Confidence 99988875543
No 172
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.36 E-value=0.00043 Score=66.51 Aligned_cols=87 Identities=30% Similarity=0.458 Sum_probs=63.7
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECC-CCHHHHHHHHh-cCCcEEEeCcHHHHHHHhCCCCcccc
Q 012319 260 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG-MSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVE 337 (466)
Q Consensus 260 ~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg-~~~~~~~~~l~-~~~dIiV~TP~~L~~~l~~~~~~~~~ 337 (466)
..+.|.+|||+..---|..+.+.++.+-. -+..|+-++.- ....++...+. ...+|.||||+||..++.++ .+.
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~---~L~ 198 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG---ALS 198 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC---CCC
Confidence 45678999999987767777777766521 12344444433 35667777776 47899999999999999765 477
Q ss_pred CCcccEEEecccc
Q 012319 338 LHTLSFFVLDEAD 350 (466)
Q Consensus 338 l~~l~~lViDEad 350 (466)
++.+.+||||=-|
T Consensus 199 l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 199 LSNLKRIVLDWSY 211 (252)
T ss_pred cccCeEEEEcCCc
Confidence 8999999999755
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.33 E-value=0.00092 Score=72.67 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=65.0
Q ss_pred ccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHH-------HHHH-H
Q 012319 213 VDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV-------TDHL-K 284 (466)
Q Consensus 213 ~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv-------~~~l-~ 284 (466)
.++=|...||+|||.||+-.|+..- + ..+-.+-||+|||.+.-.-+ .++| +
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLh-k--------------------~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k 133 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELH-K--------------------KYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFK 133 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHH-H--------------------HhCceeEEEEeccHHHHhhhHHHHHHHHHHHhh
Confidence 3777889999999999966554432 1 12345889999998743322 2344 3
Q ss_pred HHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHH------HhC-----CC-----C-ccccCCcc-cEEEe
Q 012319 285 EVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL------MSG-----GE-----K-HLVELHTL-SFFVL 346 (466)
Q Consensus 285 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~------l~~-----~~-----~-~~~~l~~l-~~lVi 346 (466)
.....+.+..+.+. .......-.....+.|++.|-..+..- |.+ .. . ....+..+ -+|||
T Consensus 134 ~~Yent~~e~~i~~--~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIv 211 (985)
T COG3587 134 SEYENTRLESYIYD--EDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIV 211 (985)
T ss_pred hhccCcceeEEeec--hHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEe
Confidence 33333334433332 222222222335688888876555221 111 00 0 00112333 37899
Q ss_pred cccchhhc
Q 012319 347 DEADRMIE 354 (466)
Q Consensus 347 DEad~ll~ 354 (466)
||-|+|..
T Consensus 212 DEPh~f~~ 219 (985)
T COG3587 212 DEPHRFLG 219 (985)
T ss_pred cChhhccc
Confidence 99999963
No 174
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.30 E-value=0.0017 Score=55.59 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=12.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|++|+|||.+.
T Consensus 6 ~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLI 21 (131)
T ss_dssp -EEEEE-TTSSHHHHH
T ss_pred ccEEEcCCCCCHHHHH
Confidence 7899999999999765
No 175
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.25 E-value=0.00073 Score=69.10 Aligned_cols=125 Identities=10% Similarity=0.170 Sum_probs=71.3
Q ss_pred CcHHHHHHHHHHHh----cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 196 PTPIQKACIPAAAH----QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 196 pt~iQ~~~i~~~l~----~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
+++-|+.++..++. .....+++.|+-|+|||+.+ -.+...++. .+..+++++|
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~~---------------------~~~~~~~~a~ 58 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLRS---------------------RGKKVLVTAP 58 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhcc---------------------ccceEEEecc
Confidence 56778888766621 22238999999999998654 333333221 2457999999
Q ss_pred cHHHHHHH--HHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEeccc
Q 012319 272 TRELALQV--TDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 349 (466)
Q Consensus 272 treLa~Qv--~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEa 349 (466)
|--.|..+ -..+..++ ++.+. .. .... +.+.+. ......+..+++|||||+
T Consensus 59 tg~AA~~i~~G~T~hs~f---~i~~~----~~-----------~~~~--~~~~~~-------~~~~~~l~~~~~lIiDEi 111 (364)
T PF05970_consen 59 TGIAAFNIPGGRTIHSFF---GIPIN----NN-----------EKSQ--CKISKN-------SRLRERLRKADVLIIDEI 111 (364)
T ss_pred hHHHHHhccCCcchHHhc---Ccccc----cc-----------cccc--cccccc-------chhhhhhhhheeeecccc
Confidence 98877665 22222222 11110 00 0000 011111 111244788999999999
Q ss_pred chhhccCCHHHHHHHHHhCCCC
Q 012319 350 DRMIENGHFRELQSIIDMLPMT 371 (466)
Q Consensus 350 d~ll~~g~~~~l~~Il~~l~~~ 371 (466)
=.+ ....+..|..++..+...
T Consensus 112 sm~-~~~~l~~i~~~lr~i~~~ 132 (364)
T PF05970_consen 112 SMV-SADMLDAIDRRLRDIRKS 132 (364)
T ss_pred cch-hHHHHHHHHHhhhhhhcc
Confidence 744 466677777777766654
No 176
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.25 E-value=0.0017 Score=71.55 Aligned_cols=126 Identities=14% Similarity=0.172 Sum_probs=83.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 193 FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 193 ~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
+..+..-|++|+-.++.... ..++.|-.|||||...+. ++..|+.. +.+||+.+-|
T Consensus 667 ~~~LN~dQr~A~~k~L~aed-y~LI~GMPGTGKTTtI~~-LIkiL~~~----------------------gkkVLLtsyT 722 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAED-YALILGMPGTGKTTTISL-LIKILVAL----------------------GKKVLLTSYT 722 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccc-hheeecCCCCCchhhHHH-HHHHHHHc----------------------CCeEEEEehh
Confidence 34678899999999888776 778999999999976544 33333321 4579999988
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEC---------------CCCHH--HHHHHHhcCCcEEEeCcHHHHHHHhCCCCcc
Q 012319 273 RELALQVTDHLKEVAKGINVRVVPIVG---------------GMSTE--KQERLLKARPELVVGTPGRLWELMSGGEKHL 335 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~~~~~~v~~~~g---------------g~~~~--~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~ 335 (466)
...+.-+.-.|..+ ++.+.-+-. +++.+ .....+...+.||.||=..+.+.|
T Consensus 723 hsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl------- 791 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL------- 791 (1100)
T ss_pred hHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh-------
Confidence 88766555444433 333221111 11111 112234457899999987776555
Q ss_pred ccCCcccEEEecccchhh
Q 012319 336 VELHTLSFFVLDEADRMI 353 (466)
Q Consensus 336 ~~l~~l~~lViDEad~ll 353 (466)
+..+.++|.|||||-.|+
T Consensus 792 f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 792 FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred hhccccCEEEEccccccc
Confidence 556778999999999865
No 177
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0035 Score=64.32 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=15.4
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+++.||||+|||.+..-
T Consensus 176 vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAK 193 (388)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 789999999999987643
No 178
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.16 E-value=0.0013 Score=64.98 Aligned_cols=125 Identities=22% Similarity=0.199 Sum_probs=73.5
Q ss_pred CcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 012319 196 PTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 275 (466)
Q Consensus 196 pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreL 275 (466)
+|+-|.++|.. ..+ .++|.|..|||||.+.+.-++..+... +....++|+|++|+..
T Consensus 1 l~~eQ~~~i~~--~~~--~~lV~a~AGSGKT~~l~~ri~~ll~~~-------------------~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEG--PLLVNAGAGSGKTTTLLERIAYLLYEG-------------------GVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS---SS--EEEEEE-TTSSHHHHHHHHHHHHHHTS-------------------SSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC--CCC--CEEEEeCCCCCchHHHHHHHHHhhccc-------------------cCChHHheecccCHHH
Confidence 47889888866 344 999999999999988755555444321 1234469999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccc
Q 012319 276 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 350 (466)
Q Consensus 276 a~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad 350 (466)
|..+...+...+...... ................+-|+|-..+..-+-........ -.-.+-|+|+..
T Consensus 58 a~e~~~ri~~~l~~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~-~~~~~~i~~~~~ 125 (315)
T PF00580_consen 58 AQEMRERIRELLEEEQQE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIG-IDPNFEILDEEE 125 (315)
T ss_dssp HHHHHHHHHHHHHHCCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT-SHTTTEEECHHH
T ss_pred HHHHHHHHHHhcCccccc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhh-ccccceeecchh
Confidence 999999998875432110 00001122223334568888988776544221100010 112456777776
No 179
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.13 E-value=0.0037 Score=59.11 Aligned_cols=155 Identities=21% Similarity=0.315 Sum_probs=90.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhc--CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ--GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 174 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~--~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
.|.-+.-|..++=.+ ..++ -.++.|.+....++.. +. +.+.+.-+|.|||.+- +|++..++.+.
T Consensus 4 ~w~p~~~P~wLl~E~-e~~i-liR~~Q~~ia~~mi~~~~~~-n~v~QlnMGeGKTsVI-~Pmla~~LAdg---------- 69 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEI-ESNI-LIRPVQVEIAREMISPPSGK-NSVMQLNMGEGKTSVI-VPMLALALADG---------- 69 (229)
T ss_pred CCCchhChHHHHHHH-HcCc-eeeHHHHHHHHHHhCCCCCC-CeEeeecccCCccchH-HHHHHHHHcCC----------
Confidence 344444444444332 2344 6799999999888753 34 8899999999999654 88888876431
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC-CCcEEEEE--ECCCC--HH--HHH----HHHhcCCcEEEeC
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG-INVRVVPI--VGGMS--TE--KQE----RLLKARPELVVGT 320 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~-~~~~v~~~--~gg~~--~~--~~~----~~l~~~~dIiV~T 320 (466)
..-+.+++| +.|..|.++.+.....+ ++-++..+ .-.+. .. ... ......-.|+++|
T Consensus 70 -----------~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~ 137 (229)
T PF12340_consen 70 -----------SRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLAT 137 (229)
T ss_pred -----------CcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeC
Confidence 123555555 67999998888765543 23333332 22222 11 111 1122345699999
Q ss_pred cHHHHHHHh-------CCCCc----c----ccCCcccEEEecccchhhc
Q 012319 321 PGRLWELMS-------GGEKH----L----VELHTLSFFVLDEADRMIE 354 (466)
Q Consensus 321 P~~L~~~l~-------~~~~~----~----~~l~~l~~lViDEad~ll~ 354 (466)
|+.++.+.- .+... . ..|.....=|+||+|.++.
T Consensus 138 PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 138 PEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 999865321 11100 0 0133344568999998774
No 180
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=97.06 E-value=0.0039 Score=70.26 Aligned_cols=142 Identities=16% Similarity=0.211 Sum_probs=88.6
Q ss_pred CCCcHHHHHHHHHHHh---cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 194 KEPTPIQKACIPAAAH---QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~---~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
..++.+|...+..+++ ++. ++|+.-..|-|||+.- +..|..++... ...|| .|||+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~-n~ILADEmgLgktvqt-i~fl~~l~~~~------------------~~~gp-flvvv 427 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRN-NCILADEMGLGKTVQT-ITFLSYLFHSL------------------QIHGP-FLVVV 427 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcc-cceehhhcCCCcchHH-HHHHHHHHHhh------------------hccCC-eEEEe
Confidence 4788899887755543 333 8999999999999753 33344443321 11233 57788
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----c-----CCcEEEeCcHHHHHHHhCCCCccccCCcc
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----A-----RPELVVGTPGRLWELMSGGEKHLVELHTL 341 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~-----~~dIiV~TP~~L~~~l~~~~~~~~~l~~l 341 (466)
|.-.+. -....|...+ .+++++++|........+... . ++++|++|.+.++.- ...|+.|
T Consensus 428 plst~~-~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD-------k~~L~~i 496 (1373)
T KOG0384|consen 428 PLSTIT-AWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD-------KAELSKI 496 (1373)
T ss_pred ehhhhH-HHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc-------HhhhccC
Confidence 865543 2344555554 677888888876543333221 1 479999998877431 1335555
Q ss_pred --cEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 342 --SFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 342 --~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
.+++|||||+|- .-...+...+..+.
T Consensus 497 ~w~~~~vDeahrLk--N~~~~l~~~l~~f~ 524 (1373)
T KOG0384|consen 497 PWRYLLVDEAHRLK--NDESKLYESLNQFK 524 (1373)
T ss_pred CcceeeecHHhhcC--chHHHHHHHHHHhc
Confidence 579999999994 34555666666664
No 181
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.06 E-value=0.011 Score=67.33 Aligned_cols=65 Identities=11% Similarity=-0.011 Sum_probs=46.8
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
.|+ .+++-|..++..++..+. -+++.+..|+|||.+. -.++..+ .. .+.++++++
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~-v~vv~G~AGTGKTT~l-~~~~~~~-e~---------------------~G~~V~~~A 397 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRD-LGVVVGYAGTGKSAML-GVAREAW-EA---------------------AGYEVRGAA 397 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCC-eEEEEeCCCCCHHHHH-HHHHHHH-HH---------------------cCCeEEEec
Confidence 444 689999999999876554 6789999999999752 3333332 21 245799999
Q ss_pred CcHHHHHHHH
Q 012319 271 PTRELALQVT 280 (466)
Q Consensus 271 PtreLa~Qv~ 280 (466)
||--.|..+.
T Consensus 398 pTGkAA~~L~ 407 (988)
T PRK13889 398 LSGIAAENLE 407 (988)
T ss_pred CcHHHHHHHh
Confidence 9987765543
No 182
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.99 E-value=0.0032 Score=69.31 Aligned_cols=133 Identities=24% Similarity=0.318 Sum_probs=95.5
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. .|+.+|.-.--.+ +.+. |+-..||=|||++..+|+.-..+ .+-.+.+++
T Consensus 77 lg~-~~~dVQliG~i~l-h~g~---iaEM~TGEGKTL~atlp~ylnaL-----------------------~gkgVhvVT 128 (822)
T COG0653 77 LGM-RHFDVQLLGGIVL-HLGD---IAEMRTGEGKTLVATLPAYLNAL-----------------------AGKGVHVVT 128 (822)
T ss_pred cCC-ChhhHHHhhhhhh-cCCc---eeeeecCCchHHHHHHHHHHHhc-----------------------CCCCcEEee
Confidence 454 5666776555443 5542 67899999999999999865443 234688888
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCC---CCccccCCcccEEEe
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGG---EKHLVELHTLSFFVL 346 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~---~~~~~~l~~l~~lVi 346 (466)
-.--||..-+..+..+...+++.++++..++........ -.+||..+|-..| .+.|.-. ...-..+..+.+-|+
T Consensus 129 vNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIv 206 (822)
T COG0653 129 VNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIV 206 (822)
T ss_pred ehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEE
Confidence 888999999999999999999999999999877655444 3589999998876 1222100 001122556889999
Q ss_pred cccchhh
Q 012319 347 DEADRMI 353 (466)
Q Consensus 347 DEad~ll 353 (466)
||+|.|+
T Consensus 207 DEvDSIL 213 (822)
T COG0653 207 DEVDSIL 213 (822)
T ss_pred cchhhee
Confidence 9999865
No 183
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.98 E-value=0.00026 Score=73.40 Aligned_cols=187 Identities=9% Similarity=-0.098 Sum_probs=122.4
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+.-.....+|..+|..+ +.|. ++++...|.+||.++|.+..+..++... ....+++.
T Consensus 282 ~~~E~~~~~~~~~~~~~-~~G~-~~~~~~~~~~GK~~~~~~~s~~~~~~~~---------------------~s~~~~~~ 338 (1034)
T KOG4150|consen 282 NTGESGIAISLELLKFA-SEGR-ADGGNEARQAGKGTCPTSGSRKFQTLCH---------------------ATNSLLPS 338 (1034)
T ss_pred ccccchhhhhHHHHhhh-hhcc-cccccchhhcCCccCcccchhhhhhcCc---------------------ccceecch
Confidence 44456678999999887 6666 8888999999999999988887765321 22468888
Q ss_pred CcHHHHHHHHHHHHHHHcC---CCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHH-hCCCCccccCCcccEEEe
Q 012319 271 PTRELALQVTDHLKEVAKG---INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM-SGGEKHLVELHTLSFFVL 346 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~---~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l-~~~~~~~~~l~~l~~lVi 346 (466)
||.+++....+.+.-+... ..-.++..+.+.+........+.+..+|++.|..+...+ .+.-.+...+-.+.++++
T Consensus 339 ~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~ 418 (1034)
T KOG4150|consen 339 EMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDT 418 (1034)
T ss_pred hHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcc
Confidence 9999887643322211110 011234455565555666667778999999999887644 332233344556778999
Q ss_pred cccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHh
Q 012319 347 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 416 (466)
Q Consensus 347 DEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~ 416 (466)
||+|..+ .-+..++...+..|...- .|.+. ..+.|++-.|||+..+..+++.+.
T Consensus 419 ~~~~~Y~-~~~~~~~~~~~R~L~~L~-----------~~F~~----~~~~~~~~~~~~~K~~~~~~~~~~ 472 (1034)
T KOG4150|consen 419 NSCALYL-FPTKALAQDQLRALSDLI-----------KGFEA----SINMGVYDGDTPYKDRTRLRSELA 472 (1034)
T ss_pred cceeeee-cchhhHHHHHHHHHHHHH-----------HHHHh----hcCcceEeCCCCcCCHHHHHHHhc
Confidence 9999765 445555555554442110 11211 246799999999988888877764
No 184
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.98 E-value=0.017 Score=64.49 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=45.2
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.+++-|..++..++.+++ -+++.++.|+|||...- .++ .++.. .+.++++++||--
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~-~~il~G~aGTGKTtll~-~i~-~~~~~---------------------~g~~V~~~ApTg~ 407 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGD-IAVVVGRAGTGKSTMLK-AAR-EAWEA---------------------AGYRVIGAALSGK 407 (744)
T ss_pred CCCHHHHHHHHHHhcCCC-EEEEEecCCCCHHHHHH-HHH-HHHHh---------------------CCCeEEEEeCcHH
Confidence 689999999999876554 78999999999986532 233 23221 1457999999988
Q ss_pred HHHHHH
Q 012319 275 LALQVT 280 (466)
Q Consensus 275 La~Qv~ 280 (466)
.|..+.
T Consensus 408 Aa~~L~ 413 (744)
T TIGR02768 408 AAEGLQ 413 (744)
T ss_pred HHHHHH
Confidence 776554
No 185
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.0051 Score=62.72 Aligned_cols=22 Identities=23% Similarity=0.090 Sum_probs=17.5
Q ss_pred cEEEecCCCCchhHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQ 235 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~ 235 (466)
.+++++|||+|||....--+..
T Consensus 139 ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999999876554433
No 186
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.88 E-value=0.0015 Score=71.20 Aligned_cols=109 Identities=21% Similarity=0.343 Sum_probs=72.5
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHH---
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE--- 285 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~--- 285 (466)
..+. .+++.+.||+|||..+..-||+.++.+. ......+.+--|+|..+.-+++.+..
T Consensus 391 ~dn~-v~~I~getgcgk~tq~aq~iLe~~~~ns------------------~g~~~na~v~qprrisaisiaerva~er~ 451 (1282)
T KOG0921|consen 391 AENR-VVIIKGETGCGKSTQVAQFLLESFLENS------------------NGASFNAVVSQPRRISAISLAERVANERG 451 (1282)
T ss_pred hcCc-eeeEeecccccchhHHHHHHHHHHhhcc------------------ccccccceeccccccchHHHHHHHHHhhH
Confidence 4454 6788899999999999999999887542 22233567777888776666655432
Q ss_pred --HHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch
Q 012319 286 --VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351 (466)
Q Consensus 286 --l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ 351 (466)
.+.-+++.+- .........--|++||-|.|++++.++ +..+.++|+||.|.
T Consensus 452 e~~g~tvgy~vR---------f~Sa~prpyg~i~fctvgvllr~~e~g------lrg~sh~i~deihe 504 (1282)
T KOG0921|consen 452 EEVGETCGYNVR---------FDSATPRPYGSIMFCTVGVLLRMMENG------LRGISHVIIDEIHE 504 (1282)
T ss_pred Hhhccccccccc---------ccccccccccceeeeccchhhhhhhhc------ccccccccchhhhh
Confidence 2222222220 011111123469999999999999765 67888999999995
No 187
>PRK04296 thymidine kinase; Provisional
Probab=96.79 E-value=0.0031 Score=58.37 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=24.4
Q ss_pred EeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 318 VGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 318 V~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+..+..++..+.. .-..+.+||||||+.+- ..++..++..+.
T Consensus 62 ~~~~~~~~~~~~~------~~~~~dvviIDEaq~l~----~~~v~~l~~~l~ 103 (190)
T PRK04296 62 VSSDTDIFELIEE------EGEKIDCVLIDEAQFLD----KEQVVQLAEVLD 103 (190)
T ss_pred eCChHHHHHHHHh------hCCCCCEEEEEccccCC----HHHHHHHHHHHH
Confidence 3455555555532 12467899999997542 233555665543
No 188
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.66 E-value=0.042 Score=63.21 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 012319 179 RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 258 (466)
Q Consensus 179 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 258 (466)
++++..+......++ .+++-|..++..+...++ -+++.|+-|+|||.+.- .+...+ ..
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r-~~~v~G~AGTGKTt~l~-~~~~~~-e~------------------ 423 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPAR-IAAVVGRAGAGKTTMMK-AAREAW-EA------------------ 423 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCC-eEEEEeCCCCCHHHHHH-HHHHHH-HH------------------
Confidence 344555555444444 799999999998865454 78999999999996542 233332 21
Q ss_pred CCCCCeEEEEEeCcHHHHHHHH
Q 012319 259 APKGHLRALIITPTRELALQVT 280 (466)
Q Consensus 259 ~~~~~~~vLil~PtreLa~Qv~ 280 (466)
.+.+++.++||-..|..+.
T Consensus 424 ---~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 424 ---AGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred ---cCCeEEEEcCcHHHHHHHH
Confidence 2457999999987776553
No 189
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=96.62 E-value=0.002 Score=67.13 Aligned_cols=100 Identities=23% Similarity=0.199 Sum_probs=65.4
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
-++-+|||.|||| ..+|+++... -.++|.-|.|-||..|++.+... ++.
T Consensus 193 Ii~H~GPTNSGKT----y~ALqrl~~a-----------------------ksGvycGPLrLLA~EV~~r~na~----gip 241 (700)
T KOG0953|consen 193 IIMHVGPTNSGKT----YRALQRLKSA-----------------------KSGVYCGPLRLLAHEVYDRLNAL----GIP 241 (700)
T ss_pred EEEEeCCCCCchh----HHHHHHHhhh-----------------------ccceecchHHHHHHHHHHHhhhc----CCC
Confidence 6677899999999 4556666432 25799999999999999999887 566
Q ss_pred EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCC
Q 012319 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 357 (466)
Q Consensus 294 v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~ 357 (466)
+-.++|......... ...+..+-||-+++- .-..+++.||||+..|-|.+.
T Consensus 242 CdL~TGeE~~~~~~~--~~~a~hvScTVEM~s-----------v~~~yeVAViDEIQmm~Dp~R 292 (700)
T KOG0953|consen 242 CDLLTGEERRFVLDN--GNPAQHVSCTVEMVS-----------VNTPYEVAVIDEIQMMRDPSR 292 (700)
T ss_pred ccccccceeeecCCC--CCcccceEEEEEEee-----------cCCceEEEEehhHHhhcCccc
Confidence 656666432111100 112456666644431 113467888888888776655
No 190
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=96.59 E-value=0.0055 Score=67.79 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=78.9
Q ss_pred CCcHHHHHHHHHHH--hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 195 EPTPIQKACIPAAA--HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l--~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
.+.++|...+..+. .++..+-|..-.+|-|||..- +.++.+++... ...|| -|||||+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K------------------~~~GP-~LvivPl 453 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHK------------------QMQGP-FLIIVPL 453 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHc------------------ccCCC-eEEeccc
Confidence 67888988876553 234336688899999999765 56666776542 22344 4888998
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHH---HHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcc--cEEEec
Q 012319 273 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEK---QERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL--SFFVLD 347 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~---~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l--~~lViD 347 (466)
-.|..= ..+|...+. .+... .+.|....+ +......+.+|+++|.+.++. ....|+.| .++|||
T Consensus 454 stL~NW-~~Ef~kWaP--Sv~~i-~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik-------dk~lLsKI~W~yMIID 522 (1157)
T KOG0386|consen 454 STLVNW-SSEFPKWAP--SVQKI-QYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK-------DKALLSKISWKYMIID 522 (1157)
T ss_pred cccCCc-hhhcccccc--ceeee-eeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC-------CHHHHhccCCcceeec
Confidence 887652 344444432 23333 333433211 112223678999999877643 12335555 579999
Q ss_pred ccchhh
Q 012319 348 EADRMI 353 (466)
Q Consensus 348 Ead~ll 353 (466)
|.|+|-
T Consensus 523 EGHRmK 528 (1157)
T KOG0386|consen 523 EGHRMK 528 (1157)
T ss_pred cccccc
Confidence 999984
No 191
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.0072 Score=62.91 Aligned_cols=70 Identities=23% Similarity=0.297 Sum_probs=51.1
Q ss_pred CCcHHHHHHHHHHHh---cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAAAH---QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~---~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.|+.=|-+||..+.. +|...-++-|-||||||++..- ++..+ ..-+||++|
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~An-VI~~~-------------------------~rPtLV~Ah 65 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMAN-VIAKV-------------------------QRPTLVLAH 65 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHH-HHHHh-------------------------CCCeEEEec
Confidence 567777777766643 3333667789999999987632 33333 113899999
Q ss_pred cHHHHHHHHHHHHHHHcCC
Q 012319 272 TRELALQVTDHLKEVAKGI 290 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~ 290 (466)
.+.||.|.+.+|+.++..-
T Consensus 66 NKTLAaQLy~Efk~fFP~N 84 (663)
T COG0556 66 NKTLAAQLYSEFKEFFPEN 84 (663)
T ss_pred chhHHHHHHHHHHHhCcCc
Confidence 9999999999999998643
No 192
>PRK08181 transposase; Validated
Probab=96.50 E-value=0.02 Score=55.94 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=17.3
Q ss_pred HhcCCccEEEecCCCCchhHHHH
Q 012319 208 AHQGKVDIIGAAETGSGKTLAFG 230 (466)
Q Consensus 208 l~~~~~dvl~~a~TGSGKTl~~~ 230 (466)
+..+. +++++||+|+|||....
T Consensus 103 ~~~~~-nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 103 LAKGA-NLLLFGPPGGGKSHLAA 124 (269)
T ss_pred HhcCc-eEEEEecCCCcHHHHHH
Confidence 34555 99999999999996543
No 193
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.44 E-value=0.042 Score=46.94 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.5
Q ss_pred cEEEecCCCCchhHH
Q 012319 214 DIIGAAETGSGKTLA 228 (466)
Q Consensus 214 dvl~~a~TGSGKTl~ 228 (466)
.+++.|++|+|||..
T Consensus 21 ~v~i~G~~G~GKT~l 35 (151)
T cd00009 21 NLLLYGPPGTGKTTL 35 (151)
T ss_pred eEEEECCCCCCHHHH
Confidence 899999999999953
No 194
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.43 E-value=0.002 Score=58.75 Aligned_cols=111 Identities=18% Similarity=0.269 Sum_probs=48.4
Q ss_pred EEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE
Q 012319 216 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 295 (466)
Q Consensus 216 l~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~ 295 (466)
|+.|+-|-||+.+..+.+...+.. ...+++|.+|+.+-+..+++.+..-+...+++..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----------------------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~ 58 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----------------------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEE 58 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------------------EEEE-SS--S-HHHHHCC------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----------------------cCceEEEecCCHHHHHHHHHHHHhhccccccccc
Confidence 467889999998887765443321 1247999999999988888877665554444330
Q ss_pred EEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHH
Q 012319 296 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 365 (466)
Q Consensus 296 ~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il 365 (466)
..... .........+..|-+..|..+... ....++||||||=.+ -...+..++
T Consensus 59 ~~~~~---~~~~~~~~~~~~i~f~~Pd~l~~~----------~~~~DlliVDEAAaI----p~p~L~~ll 111 (177)
T PF05127_consen 59 KKKRI---GQIIKLRFNKQRIEFVAPDELLAE----------KPQADLLIVDEAAAI----PLPLLKQLL 111 (177)
T ss_dssp -----------------CCC--B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHH
T ss_pred ccccc---ccccccccccceEEEECCHHHHhC----------cCCCCEEEEechhcC----CHHHHHHHH
Confidence 00000 000111123567778888776321 124589999999765 355566665
No 195
>PRK06526 transposase; Provisional
Probab=96.40 E-value=0.012 Score=57.03 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=17.5
Q ss_pred hcCCccEEEecCCCCchhHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~l 231 (466)
..+. +++++||+|+|||.....
T Consensus 96 ~~~~-nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 96 TGKE-NVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hcCc-eEEEEeCCCCchHHHHHH
Confidence 3445 999999999999976543
No 196
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.39 E-value=0.071 Score=53.48 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=37.0
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHH
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEE 240 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~ 240 (466)
.|+..-.-.|..|+..++...-.-|.+.++-|||||+.++...+...+..
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~ 273 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER 273 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH
Confidence 57766667788888887654321356678999999998888888887754
No 197
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.36 E-value=0.069 Score=46.86 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.1
Q ss_pred CCcccEEEecccchhhcc
Q 012319 338 LHTLSFFVLDEADRMIEN 355 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~ 355 (466)
-....+|||||++.+++.
T Consensus 83 ~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 83 RGGDDLIILDELTRLVRA 100 (165)
T ss_pred CCCCEEEEEEcHHHHHHH
Confidence 356789999999988643
No 198
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=96.25 E-value=0.069 Score=59.16 Aligned_cols=128 Identities=18% Similarity=0.219 Sum_probs=67.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC----CcEEE
Q 012319 220 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----NVRVV 295 (466)
Q Consensus 220 ~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~----~~~v~ 295 (466)
-.|-||||..+..+-..++..+ .+--+||||+|..- +.-.+.+|.++...+ .+.|.
T Consensus 704 cMGLGKTlQVvtflhTvL~c~k-------------------lg~ktaLvV~PlNt-~~NW~~EFekWm~~~e~~~~leV~ 763 (1567)
T KOG1015|consen 704 CMGLGKTLQVVTFLHTVLLCDK-------------------LGFKTALVVCPLNT-ALNWMNEFEKWMEGLEDDEKLEVS 763 (1567)
T ss_pred hhcccceehhhHHHHHHHHhhc-------------------cCCceEEEEcchHH-HHHHHHHHHHhcccccccccceee
Confidence 4588999876443333333321 23347999999654 556778888877642 34444
Q ss_pred EEECCCCHHHHHHHH---hcCCcEEEeCcHHHHHHHhCCCCcccc----------CCcccEEEecccchhhccCCHHHHH
Q 012319 296 PIVGGMSTEKQERLL---KARPELVVGTPGRLWELMSGGEKHLVE----------LHTLSFFVLDEADRMIENGHFRELQ 362 (466)
Q Consensus 296 ~~~gg~~~~~~~~~l---~~~~dIiV~TP~~L~~~l~~~~~~~~~----------l~~l~~lViDEad~ll~~g~~~~l~ 362 (466)
.+..-.........+ ...--|.|.-...+..+-.....+... =..-++||+||+|.|- .--..+.
T Consensus 764 eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLK--Neksa~S 841 (1567)
T KOG1015|consen 764 ELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILK--NEKSAVS 841 (1567)
T ss_pred hhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhc--cchHHHH
Confidence 433222323332222 233356555555544433221111111 1345799999999773 3344555
Q ss_pred HHHHhCC
Q 012319 363 SIIDMLP 369 (466)
Q Consensus 363 ~Il~~l~ 369 (466)
.-+..+.
T Consensus 842 kam~~ir 848 (1567)
T KOG1015|consen 842 KAMNSIR 848 (1567)
T ss_pred HHHHHHH
Confidence 5555543
No 199
>PRK14974 cell division protein FtsY; Provisional
Probab=96.24 E-value=0.051 Score=54.80 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=31.1
Q ss_pred CcccEEEecccchhh-ccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 339 HTLSFFVLDEADRMI-ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 339 ~~l~~lViDEad~ll-~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
..+++||||.|.++- +......+..+...++ +..-+++++||..+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~------------------------pd~~iLVl~a~~g~ 266 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTK------------------------PDLVIFVGDALAGN 266 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhC------------------------CceEEEeeccccch
Confidence 456799999999874 2345566666665554 44568888998864
No 200
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.24 E-value=0.074 Score=57.48 Aligned_cols=144 Identities=16% Similarity=0.171 Sum_probs=89.7
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC--C
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI--N 291 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~--~ 291 (466)
-.++..|=-.|||+... +++..++.. ..+.++++++|.+..+..+++.+..++... +
T Consensus 256 ~tVflVPRR~GKTwivv-~iI~~ll~s--------------------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~ 314 (738)
T PHA03368 256 ATVFLVPRRHGKTWFLV-PLIALALAT--------------------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGA 314 (738)
T ss_pred ceEEEecccCCchhhHH-HHHHHHHHh--------------------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcch
Confidence 77889999999998766 666666532 236789999999999999999998876532 1
Q ss_pred cEEEEEECCCCHHHHHHHHhcC--CcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 292 VRVVPIVGGMSTEKQERLLKAR--PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 292 ~~v~~~~gg~~~~~~~~~l~~~--~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
..+..+.| ... .-.+.++ +.|.++|- . ......=..+.+||||||+.+-+ ..+..|+-.++
T Consensus 315 ~~v~~vkG-e~I---~i~f~nG~kstI~FaSa-------r--ntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~ 377 (738)
T PHA03368 315 SRVDHVKG-ETI---SFSFPDGSRSTIVFASS-------H--NTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLN 377 (738)
T ss_pred hheeeecC-cEE---EEEecCCCccEEEEEec-------c--CCCCccCCcccEEEEechhhCCH----HHHHHHHHHHh
Confidence 11111122 110 0001112 24555532 0 11112224688999999998853 45566665554
Q ss_pred CCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC--CHHHHHHHhhc
Q 012319 370 MTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL--SADFRKKLKHG 418 (466)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~--~~~~~~~l~~~ 418 (466)
. .++++|++|.|-+. +..|+.+|+..
T Consensus 378 ~-----------------------~n~k~I~ISS~Ns~~~sTSFL~nLk~a 405 (738)
T PHA03368 378 Q-----------------------TNCKIIFVSSTNTGKASTSFLYNLKGA 405 (738)
T ss_pred c-----------------------cCccEEEEecCCCCccchHHHHhhcCc
Confidence 2 46789999999763 45677777543
No 201
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.24 E-value=0.041 Score=57.20 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=30.7
Q ss_pred CCCCCcHHHHHH---HHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHH
Q 012319 192 GFKEPTPIQKAC---IPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 192 g~~~pt~iQ~~~---i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
-|....|-|-+- +...|..++ +.++-.|+|+|||.+.+-.++..-+
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakG-h~llEMPSGTGKTvsLLSli~aYq~ 61 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKG-HCLLEMPSGTGKTVSLLSLIIAYQL 61 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCC-cEEEECCCCCCcchHHHHHHHHHHH
Confidence 355566777443 333445555 8899999999999887665555443
No 202
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.22 E-value=0.014 Score=61.85 Aligned_cols=129 Identities=17% Similarity=0.155 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhc----C---CccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 198 PIQKACIPAAAHQ----G---KVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 198 ~iQ~~~i~~~l~~----~---~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
|+|.-.+-.++-- + ...+++.-+=|.|||......++-.++- .+..+..+++++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~-------------------~g~~~~~i~~~A 61 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL-------------------DGEPGAEIYCAA 61 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc-------------------CCccCceEEEEe
Confidence 6788777776521 1 0246777788999998765544444431 133467899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh-cCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEeccc
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 349 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~-~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEa 349 (466)
++++-|..+++.+..+.......... . ..+.+. ..-.|..-..+.++..+.........+ +..++|+||+
T Consensus 62 ~~~~QA~~~f~~~~~~i~~~~~l~~~-~-------~~~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~-~~~~~i~DE~ 132 (477)
T PF03354_consen 62 NTRDQAKIVFDEAKKMIEASPELRKR-K-------KPKIIKSNKKEIEFPKTGSFFKALSSDADSLDGL-NPSLAIFDEL 132 (477)
T ss_pred CCHHHHHHHHHHHHHHHHhChhhccc-h-------hhhhhhhhceEEEEcCCCcEEEEEecCCCCccCC-CCceEEEeCC
Confidence 99999999999998887643211000 0 000101 122344444344444444322222223 4689999999
Q ss_pred chhhc
Q 012319 350 DRMIE 354 (466)
Q Consensus 350 d~ll~ 354 (466)
|.+-+
T Consensus 133 h~~~~ 137 (477)
T PF03354_consen 133 HAHKD 137 (477)
T ss_pred CCCCC
Confidence 98754
No 203
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.19 E-value=0.014 Score=65.24 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=52.0
Q ss_pred CCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 012319 194 KEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 273 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 273 (466)
..+++-|.+++... .+ .++|.|..|||||.+..- -+.+++.. .+...-++|+|+.|+
T Consensus 3 ~~Ln~~Q~~av~~~--~g--~~lV~AgaGSGKT~~L~~-Ria~Li~~------------------~~v~p~~IL~lTFTn 59 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PG--NLLVLAGAGSGKTRVLTH-RIAWLLSV------------------ENASPHSIMAVTFTN 59 (715)
T ss_pred cccCHHHHHHHcCC--CC--CEEEEecCCCCHHHHHHH-HHHHHHHc------------------CCCCHHHeEeeeccH
Confidence 35899999988542 34 899999999999987533 33344321 112234799999999
Q ss_pred HHHHHHHHHHHHHH
Q 012319 274 ELALQVTDHLKEVA 287 (466)
Q Consensus 274 eLa~Qv~~~l~~l~ 287 (466)
..|..+.+.+..+.
T Consensus 60 kAA~em~~Rl~~~~ 73 (715)
T TIGR01075 60 KAAAEMRHRIGALL 73 (715)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 204
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.05 E-value=0.018 Score=61.67 Aligned_cols=140 Identities=21% Similarity=0.242 Sum_probs=86.7
Q ss_pred CCcHHHHHHHHHHH---hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAAA---HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l---~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
++-++|...+..+. .+|= +-|+.-..|-|||... +.++.||..+.. --|| -|||+|
T Consensus 567 tLKEYQlkGLnWLvnlYdqGi-NGILADeMGLGKTVQs-isvlAhLaE~~n------------------IwGP-FLVVtp 625 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGI-NGILADEMGLGKTVQS-ISVLAHLAETHN------------------IWGP-FLVVTP 625 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccc-cceehhhhccchhHHH-HHHHHHHHHhcc------------------CCCc-eEEeeh
Confidence 34567766665443 2333 7788899999999765 667778876532 2233 578888
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH---------hcCCcEEEeCcHHHHHHHhCCCCccccCCcc-
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---------KARPELVVGTPGRLWELMSGGEKHLVELHTL- 341 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l---------~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l- 341 (466)
.-.|- -.++++..++. .++++..-|+......-+.+ ....||+|+|...++.-- ..|.++
T Consensus 626 aStL~-NWaqEisrFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDe-------ky~qkvK 695 (1185)
T KOG0388|consen 626 ASTLH-NWAQEISRFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDE-------KYLQKVK 695 (1185)
T ss_pred HHHHh-HHHHHHHHhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechH-------HHHHhhh
Confidence 65552 34445555543 57888888887654433331 235799999976653211 113333
Q ss_pred -cEEEecccchhhccCCHHHHHHHHH
Q 012319 342 -SFFVLDEADRMIENGHFRELQSIID 366 (466)
Q Consensus 342 -~~lViDEad~ll~~g~~~~l~~Il~ 366 (466)
.|.|+|||..|- ......+..++.
T Consensus 696 WQYMILDEAQAIK-SSsS~RWKtLLs 720 (1185)
T KOG0388|consen 696 WQYMILDEAQAIK-SSSSSRWKTLLS 720 (1185)
T ss_pred hhheehhHHHHhh-hhhhhHHHHHhh
Confidence 589999999885 444455555553
No 205
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.05 E-value=0.056 Score=56.39 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.1
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+++.+|||+|||.+.+-
T Consensus 223 ~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAK 240 (424)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 788999999999976543
No 206
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.03 E-value=0.036 Score=54.22 Aligned_cols=52 Identities=23% Similarity=0.389 Sum_probs=35.3
Q ss_pred cccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHH
Q 012319 168 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEE 240 (466)
Q Consensus 168 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~ 240 (466)
+|....+|.+|++++-+.+.+. ...| -|+|.+|||||||.+. ..+++++.++
T Consensus 101 Ip~~i~~~e~LglP~i~~~~~~------------------~~~G--LILVTGpTGSGKSTTl-AamId~iN~~ 152 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRELAE------------------SPRG--LILVTGPTGSGKSTTL-AAMIDYINKH 152 (353)
T ss_pred cCccCCCHHHcCCCHHHHHHHh------------------CCCc--eEEEeCCCCCcHHHHH-HHHHHHHhcc
Confidence 4556677777777776654221 1234 8999999999999664 5677877543
No 207
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.99 E-value=0.062 Score=59.14 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=51.7
Q ss_pred CCcHHHHHHHHHHHh---cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAAAH---QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~---~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.|+..|..+|..+.. .+....++.|-||||||+...- ++..+ +..+|||+|
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~-------------------------~~p~Lvi~~ 62 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV-------------------------NRPTLVIAH 62 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh-------------------------CCCEEEEEC
Confidence 689999999887744 2222556899999999977542 33222 114899999
Q ss_pred cHHHHHHHHHHHHHHHcC
Q 012319 272 TRELALQVTDHLKEVAKG 289 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~ 289 (466)
+..+|.|++..|+.++..
T Consensus 63 n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 63 NKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999999998753
No 208
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.98 E-value=0.08 Score=58.20 Aligned_cols=141 Identities=14% Similarity=0.178 Sum_probs=83.9
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEE
Q 012319 187 SIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 266 (466)
Q Consensus 187 ~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 266 (466)
.+..+..+.+..-|.+.+..++..++.-+++.|.-|=|||.+..|.+.... .. .. ..++
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~-~~------------------~~--~~~i 264 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAA-RL------------------AG--SVRI 264 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHH-Hh------------------cC--CceE
Confidence 355665656666666677777766654788899999999999887773222 11 01 4579
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEe
Q 012319 267 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 346 (466)
Q Consensus 267 Lil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lVi 346 (466)
+|.+|+.+-+..++..+.+-+...|++-.+...... .....-.....|=+-+|.... . .-++|||
T Consensus 265 iVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~------------~-~~DllvV 329 (758)
T COG1444 265 IVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ------------E-EADLLVV 329 (758)
T ss_pred EEeCCCHHHHHHHHHHHHHhHHHhCCcccccccccc--ceeeecCCceeEEeeCcchhc------------c-cCCEEEE
Confidence 999999998888887776665555543221111100 000000011234445553321 1 1579999
Q ss_pred cccchhhccCCHHHHHHHHHh
Q 012319 347 DEADRMIENGHFRELQSIIDM 367 (466)
Q Consensus 347 DEad~ll~~g~~~~l~~Il~~ 367 (466)
|||=.| ...-+..++..
T Consensus 330 DEAAaI----plplL~~l~~~ 346 (758)
T COG1444 330 DEAAAI----PLPLLHKLLRR 346 (758)
T ss_pred ehhhcC----ChHHHHHHHhh
Confidence 999765 45566666643
No 209
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.97 E-value=0.015 Score=64.41 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=51.2
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.+++-|.+++... .+ .++|.|..|||||.+...-+. +++.. .+...-++|+|+.|+.
T Consensus 2 ~Ln~~Q~~av~~~--~g--~~lV~AgpGSGKT~vL~~Ria-~Li~~------------------~~v~p~~IL~lTFT~k 58 (672)
T PRK10919 2 RLNPGQQQAVEFV--TG--PCLVLAGAGSGKTRVITNKIA-HLIRG------------------CGYQARHIAAVTFTNK 58 (672)
T ss_pred CCCHHHHHHHhCC--CC--CEEEEecCCCCHHHHHHHHHH-HHHHh------------------cCCCHHHeeeEechHH
Confidence 4789999988543 34 888999999999987644433 33321 0112336999999999
Q ss_pred HHHHHHHHHHHHHc
Q 012319 275 LALQVTDHLKEVAK 288 (466)
Q Consensus 275 La~Qv~~~l~~l~~ 288 (466)
.|..+.+.+..+..
T Consensus 59 AA~em~~Rl~~~l~ 72 (672)
T PRK10919 59 AAREMKERVAQTLG 72 (672)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999887654
No 210
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.96 E-value=0.034 Score=61.48 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=54.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 193 FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 193 ~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
-..+++-|+.++-. ..+ +++|.|..|||||.+.+- .+.+++... ...+-++|+|+.|
T Consensus 194 ~~~L~~~Q~~av~~---~~~-~~lV~agaGSGKT~vl~~-r~ayLl~~~------------------~~~~~~IL~ltft 250 (684)
T PRK11054 194 SSPLNPSQARAVVN---GED-SLLVLAGAGSGKTSVLVA-RAGWLLARG------------------QAQPEQILLLAFG 250 (684)
T ss_pred CCCCCHHHHHHHhC---CCC-CeEEEEeCCCCHHHHHHH-HHHHHHHhC------------------CCCHHHeEEEecc
Confidence 34789999988843 333 789999999999977643 333333221 1123379999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcEE
Q 012319 273 RELALQVTDHLKEVAKGINVRV 294 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~~~~~~v 294 (466)
|..|..+.+.+.......++.+
T Consensus 251 ~~AA~em~eRL~~~lg~~~v~v 272 (684)
T PRK11054 251 RQAAEEMDERIRERLGTEDITA 272 (684)
T ss_pred HHHHHHHHHHHHHhcCCCCcEE
Confidence 9999999988877654323443
No 211
>PRK05642 DNA replication initiation factor; Validated
Probab=95.95 E-value=0.021 Score=54.66 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=20.5
Q ss_pred CCcccEEEecccchhhccCC-HHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGH-FRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~-~~~l~~Il~~l~ 369 (466)
+.++.+||||++|.+..... ...+-.+++.+.
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~ 127 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLR 127 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHH
Confidence 34567899999997743322 344666666554
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.11 Score=53.24 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=16.1
Q ss_pred cEEEecCCCCchhHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPI 233 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpi 233 (466)
.++++||||+|||.....-+
T Consensus 243 vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 78899999999997764443
No 213
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.93 E-value=0.049 Score=61.85 Aligned_cols=138 Identities=25% Similarity=0.226 Sum_probs=82.6
Q ss_pred CCCcHHHHHHHHHHH---hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 194 KEPTPIQKACIPAAA---HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l---~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
..+.++|...+..+. .....+-+++...|-|||+..+..+.. ++... ....+.+||++
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~------------------~~~~~~~liv~ 397 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESI------------------KVYLGPALIVV 397 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhcc------------------cCCCCCeEEEe
Confidence 457788888776543 222225677899999999876444443 22210 11134689999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCC-----HHHHHHHHhcC----CcEEEeCcHHHHHHHhCCCCccccCCcc
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMS-----TEKQERLLKAR----PELVVGTPGRLWELMSGGEKHLVELHTL 341 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~-----~~~~~~~l~~~----~dIiV~TP~~L~~~l~~~~~~~~~l~~l 341 (466)
|+ +++.++.+.+.++...... +...+|... .......+... .+|+++|.+.|...+. ......-...
T Consensus 398 p~-s~~~nw~~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~--~~~~l~~~~~ 473 (866)
T COG0553 398 PA-SLLSNWKREFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLV--DHGGLKKIEW 473 (866)
T ss_pred cH-HHHHHHHHHHhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhh--hHHHHhhcee
Confidence 96 4566777788777654332 555666554 22222222222 7999999999877321 1111223455
Q ss_pred cEEEecccchhhc
Q 012319 342 SFFVLDEADRMIE 354 (466)
Q Consensus 342 ~~lViDEad~ll~ 354 (466)
.++|+||||+|-.
T Consensus 474 ~~~v~DEa~~ikn 486 (866)
T COG0553 474 DRVVLDEAHRIKN 486 (866)
T ss_pred eeeehhhHHHHhh
Confidence 7899999999753
No 214
>PRK06893 DNA replication initiation factor; Validated
Probab=95.84 E-value=0.024 Score=54.03 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=19.1
Q ss_pred CCcccEEEecccchhhccCC-HHHHHHHHHhC
Q 012319 338 LHTLSFFVLDEADRMIENGH-FRELQSIIDML 368 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~-~~~l~~Il~~l 368 (466)
+.++++|||||+|.+..... ...+..+++.+
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~ 120 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRI 120 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHH
Confidence 35678999999998853222 22444555444
No 215
>PHA02533 17 large terminase protein; Provisional
Probab=95.83 E-value=0.09 Score=56.42 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=51.8
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.|.|+|...+..+.. ++ -.++..+=..|||.+.+..++...+.. .+..+++++|++.
T Consensus 59 ~L~p~Q~~i~~~~~~-~R-~~ii~~aRq~GKStl~a~~al~~a~~~---------------------~~~~v~i~A~~~~ 115 (534)
T PHA02533 59 QMRDYQKDMLKIMHK-NR-FNACNLSRQLGKTTVVAIFLLHYVCFN---------------------KDKNVGILAHKAS 115 (534)
T ss_pred CCcHHHHHHHHHHhc-Ce-EEEEEEcCcCChHHHHHHHHHHHHHhC---------------------CCCEEEEEeCCHH
Confidence 588999998877633 33 345666678899988765555444311 2448999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 012319 275 LALQVTDHLKEVAKG 289 (466)
Q Consensus 275 La~Qv~~~l~~l~~~ 289 (466)
-|..+++.++.+...
T Consensus 116 QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 116 MAAEVLDRTKQAIEL 130 (534)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999888876543
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.79 E-value=0.11 Score=49.90 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=17.9
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
.+++++++|+|||.... .+.+.+.
T Consensus 101 ~~~l~G~~GtGKThLa~-aia~~l~ 124 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAA-AICNELL 124 (244)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHH
Confidence 78999999999996653 3445553
No 217
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=0.014 Score=61.58 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=29.8
Q ss_pred hcCCcEEEeCcHHHHHHHhCCCCccc---cCCcccEE-Eecccchhh
Q 012319 311 KARPELVVGTPGRLWELMSGGEKHLV---ELHTLSFF-VLDEADRMI 353 (466)
Q Consensus 311 ~~~~dIiV~TP~~L~~~l~~~~~~~~---~l~~l~~l-ViDEad~ll 353 (466)
.....|.++|...|...+.+.....+ +|....+| +-||||+|-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 34678999999999887765433333 34555554 669999985
No 218
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.73 E-value=0.1 Score=53.35 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=16.3
Q ss_pred CCccEEEecCCCCchhHHHHH
Q 012319 211 GKVDIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 211 ~~~dvl~~a~TGSGKTl~~~l 231 (466)
++ .+.+.||||-|||.+..=
T Consensus 203 ~~-vi~LVGPTGVGKTTTlAK 222 (407)
T COG1419 203 KR-VIALVGPTGVGKTTTLAK 222 (407)
T ss_pred Cc-EEEEECCCCCcHHHHHHH
Confidence 44 899999999999987543
No 219
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.73 E-value=0.24 Score=55.48 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=18.1
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHh
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDM 367 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~ 367 (466)
..+.+|||||+|.|... ....|..++..
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHH
Confidence 34568999999999743 23344445543
No 220
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.70 E-value=0.12 Score=49.04 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=20.8
Q ss_pred CCcccEEEecccchhhccC-CHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENG-HFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g-~~~~l~~Il~~l~ 369 (466)
+..+++||||.+|.+.... ....+-.+++.+.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~ 127 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLI 127 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHH
Confidence 4678899999999885332 2344555555543
No 221
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.68 E-value=0.068 Score=56.25 Aligned_cols=32 Identities=6% Similarity=0.104 Sum_probs=19.7
Q ss_pred CCcccEEEecccchhhcc-CCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIEN-GHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~-g~~~~l~~Il~~l~ 369 (466)
+.++.+|||||+|.+... .....+..+++.+.
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~ 236 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI 236 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 456789999999977421 12344555555543
No 222
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.66 E-value=0.036 Score=54.54 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=35.1
Q ss_pred ccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHH
Q 012319 213 VDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 285 (466)
Q Consensus 213 ~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~ 285 (466)
++++++|+|+.|||. ++.++.+.+.... .......|-++|-+|...-...++..+-.
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~~-----------d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQS-----------DEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCCC-----------CCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 489999999999997 3455544321100 00112346778888887766666665544
No 223
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.66 E-value=0.27 Score=53.49 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=51.3
Q ss_pred CCCcHHHHHHHHHHHh-cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 194 KEPTPIQKACIPAAAH-QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~-~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
..|+|.=.+-|..+++ .++.-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|.
T Consensus 168 ~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----------------------~Gi~IlvTAH~ 225 (752)
T PHA03333 168 EAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----------------------LEIDIVVQAQR 225 (752)
T ss_pred CCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----------------------cCCeEEEECCC
Confidence 3456666665655543 122267888999999998876555533311 24689999999
Q ss_pred HHHHHHHHHHHHHHHc
Q 012319 273 RELALQVTDHLKEVAK 288 (466)
Q Consensus 273 reLa~Qv~~~l~~l~~ 288 (466)
..-+.++++.+..++.
T Consensus 226 ~~ts~evF~rv~~~le 241 (752)
T PHA03333 226 KTMCLTLYNRVETVVH 241 (752)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999998888776
No 224
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.64 E-value=0.042 Score=55.11 Aligned_cols=68 Identities=28% Similarity=0.357 Sum_probs=46.6
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCe
Q 012319 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 264 (466)
Q Consensus 185 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (466)
+..+...|+ +++.|...+..++..+. +++++|+|||||| .++-.++..+.. ..+..
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~-~ilI~G~tGSGKT-Tll~aL~~~~~~--------------------~~~~~ 179 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHR-NILVIGGTGSGKT-TLVNAIINEMVI--------------------QDPTE 179 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCC-eEEEECCCCCCHH-HHHHHHHHhhhh--------------------cCCCc
Confidence 444555565 56788888888777776 9999999999999 444555554421 11234
Q ss_pred EEEEEeCcHHHH
Q 012319 265 RALIITPTRELA 276 (466)
Q Consensus 265 ~vLil~PtreLa 276 (466)
++++|-.+.||.
T Consensus 180 rivtIEd~~El~ 191 (319)
T PRK13894 180 RVFIIEDTGEIQ 191 (319)
T ss_pred eEEEEcCCCccc
Confidence 788888888863
No 225
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.57 E-value=0.03 Score=61.98 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 012319 196 PTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 275 (466)
Q Consensus 196 pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreL 275 (466)
+++-|.+++-.. .+ +++|.|..|||||.+.+--+...+ .. .+....++|+|+.|+..
T Consensus 2 Ln~~Q~~av~~~--~~--~~~V~Ag~GSGKT~~L~~ri~~ll-~~------------------~~~~p~~IL~vTFt~~A 58 (664)
T TIGR01074 2 LNPQQQEAVEYV--TG--PCLVLAGAGSGKTRVITNKIAYLI-QN------------------CGYKARNIAAVTFTNKA 58 (664)
T ss_pred CCHHHHHHHhCC--CC--CEEEEecCCCCHHHHHHHHHHHHH-Hh------------------cCCCHHHeEEEeccHHH
Confidence 688898887542 34 899999999999977644444333 21 11223479999999999
Q ss_pred HHHHHHHHHHHHc
Q 012319 276 ALQVTDHLKEVAK 288 (466)
Q Consensus 276 a~Qv~~~l~~l~~ 288 (466)
|.++...+.....
T Consensus 59 a~em~~Rl~~~l~ 71 (664)
T TIGR01074 59 AREMKERVAKTLG 71 (664)
T ss_pred HHHHHHHHHHHhC
Confidence 9999998887654
No 226
>PRK06921 hypothetical protein; Provisional
Probab=95.48 E-value=0.2 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=17.1
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.+++.|++|+|||... ..+.+.+
T Consensus 119 ~l~l~G~~G~GKThLa-~aia~~l 141 (266)
T PRK06921 119 SIALLGQPGSGKTHLL-TAAANEL 141 (266)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHH
Confidence 8999999999999654 3344444
No 227
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.46 E-value=0.061 Score=53.91 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=34.5
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 187 SIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 187 ~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.+...|. +++.|...|..++..+. ++|++|+||||||... -.++..+
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~-nilI~G~tGSGKTTll-~aL~~~i 168 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRL-NIVISGGTGSGKTTLA-NAVIAEI 168 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCC-eEEEECCCCCCHHHHH-HHHHHHH
Confidence 3445554 67888888888888777 9999999999999543 3344444
No 228
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.39 E-value=0.073 Score=54.99 Aligned_cols=121 Identities=16% Similarity=0.211 Sum_probs=68.9
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH-HHHHHHHHHHHHHcCCCc
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE-LALQVTDHLKEVAKGINV 292 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre-La~Qv~~~l~~l~~~~~~ 292 (466)
-.++.|..|||||.+.++-++..++.. ..+.++|++-||.. |..-++..+.......++
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~--------------------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~ 62 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN--------------------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGI 62 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc--------------------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCC
Confidence 467889999999999988888877642 12457999999987 555577777766554444
Q ss_pred EEEEEECCCCHHHHHHHHhc-CCcEEEeCc-HHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 293 RVVPIVGGMSTEKQERLLKA-RPELVVGTP-GRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 293 ~v~~~~gg~~~~~~~~~l~~-~~dIiV~TP-~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
....-...... ... +.. +..|++..- ..-- .......+.++.||||..+- ...+..++..|.
T Consensus 63 ~~~~~~~~~~~--~i~-~~~~g~~i~f~g~~d~~~--------~ik~~~~~~~~~idEa~~~~----~~~~~~l~~rlr 126 (396)
T TIGR01547 63 NYEFKKSKSSM--EIK-ILNTGKKFIFKGLNDKPN--------KLKSGAGIAIIWFEEASQLT----FEDIKELIPRLR 126 (396)
T ss_pred hhheeecCCcc--EEE-ecCCCeEEEeecccCChh--------HhhCcceeeeehhhhhhhcC----HHHHHHHHHHhh
Confidence 21111111000 000 111 334555432 1111 11223446899999999873 234555555443
No 229
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.37 E-value=0.085 Score=55.59 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=16.6
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.++++||+|+|||... -.+.+.+
T Consensus 150 ~l~l~G~~G~GKThL~-~ai~~~~ 172 (450)
T PRK00149 150 PLFIYGGVGLGKTHLL-HAIGNYI 172 (450)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHH
Confidence 6899999999999554 3344444
No 230
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.35 E-value=0.084 Score=52.47 Aligned_cols=68 Identities=28% Similarity=0.346 Sum_probs=45.2
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCe
Q 012319 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 264 (466)
Q Consensus 185 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (466)
+..+...|. +++-|...+..++..+. +++++|+||||||... -.++..+.. ..+.-
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~-~ilI~G~tGSGKTTll-~al~~~i~~--------------------~~~~~ 163 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARK-NILVVGGTGSGKTTLA-NALLAEIAK--------------------NDPTD 163 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCC-eEEEECCCCCCHHHHH-HHHHHHhhc--------------------cCCCc
Confidence 444555554 56677777777777766 9999999999999553 334444421 11234
Q ss_pred EEEEEeCcHHHH
Q 012319 265 RALIITPTRELA 276 (466)
Q Consensus 265 ~vLil~PtreLa 276 (466)
+++++=-+.||.
T Consensus 164 ri~tiEd~~El~ 175 (299)
T TIGR02782 164 RVVIIEDTRELQ 175 (299)
T ss_pred eEEEECCchhhc
Confidence 788888888874
No 231
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.35 E-value=0.048 Score=46.02 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=14.7
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
.+++.||+|||||....
T Consensus 4 ~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 4 VILIVGPPGSGKTTLAR 20 (148)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78999999999996653
No 232
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.29 E-value=0.24 Score=60.97 Aligned_cols=66 Identities=21% Similarity=0.171 Sum_probs=48.0
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.+++-|..++..++..+..-+++.++.|+|||.+. -.++. +++. .+.++++++||-.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~-~~~~---------------------~G~~V~~lAPTgr 485 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLH-LASE---------------------QGYEIQIITAGSL 485 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHH-HHHh---------------------cCCeEEEEeCCHH
Confidence 68999999999988765447899999999999653 22332 2221 2458999999998
Q ss_pred HHHHHHHHH
Q 012319 275 LALQVTDHL 283 (466)
Q Consensus 275 La~Qv~~~l 283 (466)
.|.++.+..
T Consensus 486 AA~~L~e~~ 494 (1960)
T TIGR02760 486 SAQELRQKI 494 (1960)
T ss_pred HHHHHHHHh
Confidence 777666543
No 233
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.23 E-value=0.041 Score=61.53 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.+++-|.+++-.. .+ .++|.|..|||||.+..-- +.+++.. .+...-++|+|+-|+.
T Consensus 9 ~Ln~~Q~~av~~~--~g--~~lV~AgaGSGKT~vl~~R-ia~Li~~------------------~~v~p~~IL~lTFT~k 65 (721)
T PRK11773 9 SLNDKQREAVAAP--LG--NMLVLAGAGSGKTRVLVHR-IAWLMQV------------------ENASPYSIMAVTFTNK 65 (721)
T ss_pred hcCHHHHHHHhCC--CC--CEEEEecCCCCHHHHHHHH-HHHHHHc------------------CCCChhHeEeeeccHH
Confidence 5899999988543 34 8899999999999775333 3333321 1122347999999999
Q ss_pred HHHHHHHHHHHHHc
Q 012319 275 LALQVTDHLKEVAK 288 (466)
Q Consensus 275 La~Qv~~~l~~l~~ 288 (466)
.|..+.+.+..+..
T Consensus 66 AA~Em~~Rl~~~~~ 79 (721)
T PRK11773 66 AAAEMRHRIEQLLG 79 (721)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
No 234
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.21 E-value=0.22 Score=60.10 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=46.6
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.+++.|..++..++.....-+++.+..|+|||... -.++..+... ....+.+++.++||-.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l------------------~~~~~~~V~glAPTgr 1027 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL------------------PESERPRVVGLGPTHR 1027 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh------------------hcccCceEEEECCcHH
Confidence 68999999999998764337899999999999664 2222222110 1123457899999988
Q ss_pred HHHHHH
Q 012319 275 LALQVT 280 (466)
Q Consensus 275 La~Qv~ 280 (466)
.|.++.
T Consensus 1028 AAk~L~ 1033 (1747)
T PRK13709 1028 AVGEMR 1033 (1747)
T ss_pred HHHHHH
Confidence 876554
No 235
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.12 E-value=0.2 Score=55.22 Aligned_cols=69 Identities=26% Similarity=0.338 Sum_probs=51.7
Q ss_pred CCcHHHHHHHHHHHhc---CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAAAHQ---GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~---~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.|++.|..+|..++.. +....++.+.||||||+.+.. ++..+ +..+|||+|
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~~-------------------------~r~vLIVt~ 65 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIARL-------------------------QRPTLVLAH 65 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHHh-------------------------CCCEEEEEC
Confidence 7999999999887542 211457899999999977532 22221 124999999
Q ss_pred cHHHHHHHHHHHHHHHcC
Q 012319 272 TRELALQVTDHLKEVAKG 289 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~ 289 (466)
+...|.|+++.|..++..
T Consensus 66 ~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 66 NKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CHHHHHHHHHHHHHhcCC
Confidence 999999999999988653
No 236
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.10 E-value=0.37 Score=59.42 Aligned_cols=65 Identities=23% Similarity=0.251 Sum_probs=45.9
Q ss_pred CCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHH---HHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 194 KEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFG---LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~---lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
..+++.|..++..++.....-+++.+..|+|||.... -++.+.+ . ..+.+++.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~---------------------~~g~~v~glA 1075 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-E---------------------SEQLQVIGLA 1075 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-H---------------------hcCCeEEEEe
Confidence 3689999999999876644367889999999996651 1222222 1 1246799999
Q ss_pred CcHHHHHHHH
Q 012319 271 PTRELALQVT 280 (466)
Q Consensus 271 PtreLa~Qv~ 280 (466)
||-..|.++.
T Consensus 1076 pT~~Aa~~L~ 1085 (1960)
T TIGR02760 1076 PTHEAVGELK 1085 (1960)
T ss_pred ChHHHHHHHH
Confidence 9987776553
No 237
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.3 Score=51.98 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=16.6
Q ss_pred cCCccEEEecCCCCchhHHHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~~l 231 (466)
.++ .++++||||+|||.....
T Consensus 349 ~G~-vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 349 RGG-VIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCC-EEEEECCCCCCHHHHHHH
Confidence 344 888999999999977644
No 238
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.09 E-value=0.23 Score=59.28 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=46.8
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHH--HHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF--GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~--~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
.+++-|..++..++.....-+++.+..|+|||... ++-++..+. ...+..++.++||
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~---------------------e~~g~~V~glAPT 893 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP---------------------ESERPRVVGLGPT 893 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh---------------------hccCceEEEEech
Confidence 68999999999998653338899999999999764 233333221 1134579999999
Q ss_pred HHHHHHHH
Q 012319 273 RELALQVT 280 (466)
Q Consensus 273 reLa~Qv~ 280 (466)
-..|..+.
T Consensus 894 gkAa~~L~ 901 (1623)
T PRK14712 894 HRAVGEMR 901 (1623)
T ss_pred HHHHHHHH
Confidence 88776654
No 239
>PRK08727 hypothetical protein; Validated
Probab=95.02 E-value=0.095 Score=50.08 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=13.7
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++|++|+|||...
T Consensus 43 ~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 43 WLYLSGPAGTGKTHLA 58 (233)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999544
No 240
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.93 E-value=0.11 Score=57.65 Aligned_cols=20 Identities=25% Similarity=0.129 Sum_probs=16.1
Q ss_pred cEEEecCCCCchhHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPI 233 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpi 233 (466)
-+.+++|||+|||.+...-+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 67899999999998765443
No 241
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.93 E-value=0.18 Score=50.84 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=17.7
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
+++++|+||+|||... ..+.+.++
T Consensus 185 ~Lll~G~~GtGKThLa-~aIa~~l~ 208 (329)
T PRK06835 185 NLLFYGNTGTGKTFLS-NCIAKELL 208 (329)
T ss_pred cEEEECCCCCcHHHHH-HHHHHHHH
Confidence 9999999999999744 23444443
No 242
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.22 Score=50.98 Aligned_cols=33 Identities=33% Similarity=0.391 Sum_probs=20.7
Q ss_pred HHHHHhcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 204 IPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 204 i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.|.+..+...++++-|+||+|||.+. -.++..+
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~~-~~v~~~l 66 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTATV-KFVMEEL 66 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHHH-HHHHHHH
Confidence 34443333336999999999999664 3344444
No 243
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.04 Score=50.65 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=33.3
Q ss_pred CcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 314 PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 314 ~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
..++|-.+..++..+.... ....+.+|.||||+.+- ......+..|.+.|+
T Consensus 60 ~A~~i~~~~~i~~~i~~~~----~~~~~~~v~IDEaQF~~-~~~v~~l~~lad~lg 110 (201)
T COG1435 60 EAVVIPSDTDIFDEIAALH----EKPPVDCVLIDEAQFFD-EELVYVLNELADRLG 110 (201)
T ss_pred cceecCChHHHHHHHHhcc----cCCCcCEEEEehhHhCC-HHHHHHHHHHHhhcC
Confidence 4677888888888885431 11228899999998663 444555555655544
No 244
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.92 E-value=0.13 Score=49.79 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=23.7
Q ss_pred CCcHHHHHHHHHHH---hcCCccEEEecCCCCchhHHH
Q 012319 195 EPTPIQKACIPAAA---HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l---~~~~~dvl~~a~TGSGKTl~~ 229 (466)
.+++.+.+++..+. ..+...++++|++|+|||...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 46666666665542 232226889999999999654
No 245
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.88 E-value=0.13 Score=53.48 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=16.7
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.++++|++|+|||... ..+.+.+
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l 160 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEI 160 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHH
Confidence 5789999999999654 3344444
No 246
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.87 E-value=0.12 Score=50.09 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=33.5
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 284 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~ 284 (466)
.++. ++++.|++|+|||...+. +.+.+.+. + .-++++++.+|+.++...+.
T Consensus 103 ~~~~-nl~l~G~~G~GKThLa~A-i~~~l~~~----------------------g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 103 ERGE-NLVLLGPPGVGKTHLAIA-IGNELLKA----------------------G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred ccCC-cEEEECCCCCcHHHHHHH-HHHHHHHc----------------------C-CeEEEEEHHHHHHHHHHHHh
Confidence 3455 999999999999976633 44444321 2 34566677788777665443
No 247
>PRK12377 putative replication protein; Provisional
Probab=94.84 E-value=0.28 Score=47.34 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=17.5
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
.++++|++|+|||... ..+.+.+.
T Consensus 103 ~l~l~G~~GtGKThLa-~AIa~~l~ 126 (248)
T PRK12377 103 NFVFSGKPGTGKNHLA-AAIGNRLL 126 (248)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHH
Confidence 8999999999999654 33444443
No 248
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.81 E-value=0.3 Score=46.21 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|++|+|||...
T Consensus 44 ~~~l~G~~G~GKT~La 59 (227)
T PRK08903 44 FFYLWGEAGSGRSHLL 59 (227)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999543
No 249
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.76 E-value=0.26 Score=45.79 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
-+++.||||+|||.+..
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 57889999999997753
No 250
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.72 E-value=0.12 Score=50.66 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=25.0
Q ss_pred ccCCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 336 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 336 ~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
.....+++|||||||.|- ..-|..+..+++...
T Consensus 125 ~~~~~fKiiIlDEcdsmt-sdaq~aLrr~mE~~s 157 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMT-SDAQAALRRTMEDFS 157 (346)
T ss_pred CCCCcceEEEEechhhhh-HHHHHHHHHHHhccc
Confidence 345667999999999986 456777777776654
No 251
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.69 E-value=0.48 Score=46.35 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=16.0
Q ss_pred cEEEecCCCCchhHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLP 232 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lp 232 (466)
.+++++++|+|||..+.+-
T Consensus 77 ~i~~~G~~g~GKTtl~~~l 95 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKM 95 (270)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 8899999999999876543
No 252
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.66 E-value=0.17 Score=46.06 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=30.0
Q ss_pred EEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 012319 215 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 286 (466)
Q Consensus 215 vl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l 286 (466)
+++.|++|+|||...+--+...+ + .+.+++|++. -+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~----------------------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A----------------------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H----------------------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68899999999965443333333 1 1335777764 45566666666555
No 253
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.58 E-value=0.11 Score=48.84 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|++|+|||...
T Consensus 40 ~lll~G~~G~GKT~la 55 (226)
T TIGR03420 40 FLYLWGESGSGKSHLL 55 (226)
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999655
No 254
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.55 E-value=0.11 Score=54.12 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=23.5
Q ss_pred CcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHH
Q 012319 196 PTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFG 230 (466)
Q Consensus 196 pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~ 230 (466)
+-.....++..+ ..++ ++++++++|+|||....
T Consensus 180 ~e~~le~l~~~L-~~~~-~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRL-TIKK-NIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHH-hcCC-CEEEECCCCCCHHHHHH
Confidence 444455555555 4555 99999999999996653
No 255
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.54 E-value=0.12 Score=54.60 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=46.4
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEE-EEEeCc-HHHHHHHHHHHHHHHcCCC
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA-LIITPT-RELALQVTDHLKEVAKGIN 291 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-Lil~Pt-reLa~Qv~~~l~~l~~~~~ 291 (466)
.+++.||||+|||.+...-+....... +..++ ||-+-+ |.-+. +.+..++...+
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~~~~---------------------G~~kV~LI~~Dt~RigA~---EQLr~~AeilG 313 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVMRH---------------------GASKVALLTTDSYRIGGH---EQLRIYGKILG 313 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHhc---------------------CCCeEEEEeCCccchhHH---HHHHHHHHHhC
Confidence 688999999999987654433222111 11123 333333 33333 34444444445
Q ss_pred cEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHH
Q 012319 292 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 325 (466)
Q Consensus 292 ~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~ 325 (466)
+.+...............+...-.|+|-|+|+..
T Consensus 314 Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 314 VPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQ 347 (484)
T ss_pred CCeeccCCchhHHHHHHhccCCCeEEeCCCCcCh
Confidence 5444433333333333444455678999999653
No 256
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.45 E-value=0.085 Score=59.03 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=50.8
Q ss_pred CCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 012319 194 KEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 273 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 273 (466)
..++|-|.+++.+. .+ .++|.|..|||||.+..--+...+ ... +..+-++|+|+-|+
T Consensus 3 ~~Ln~~Q~~av~~~--~g--~~lV~AgaGSGKT~~l~~ria~Li-~~~------------------~i~P~~IL~lTFT~ 59 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EG--PLLIMAGAGSGKTRVLTHRIAHLI-AEK------------------NVAPWNILAITFTN 59 (726)
T ss_pred cccCHHHHHHHhCC--CC--CEEEEeCCCCCHHHHHHHHHHHHH-HcC------------------CCCHHHeeeeeccH
Confidence 35899999988643 34 899999999999977644444333 210 11123689999999
Q ss_pred HHHHHHHHHHHHHHc
Q 012319 274 ELALQVTDHLKEVAK 288 (466)
Q Consensus 274 eLa~Qv~~~l~~l~~ 288 (466)
..|..+.+.+..++.
T Consensus 60 kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 60 KAAREMKERVEKLLG 74 (726)
T ss_pred HHHHHHHHHHHHHhc
Confidence 988888888877654
No 257
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.43 E-value=0.44 Score=46.32 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=18.0
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQ 235 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~ 235 (466)
..+. -+++.|++|+|||...+..+.+
T Consensus 28 ~~g~-~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 28 RKGE-LIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cCCc-EEEEEcCCCCCHHHHHHHHHHH
Confidence 3444 7899999999999654443333
No 258
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.42 E-value=0.49 Score=54.15 Aligned_cols=79 Identities=16% Similarity=0.349 Sum_probs=63.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.+++|++|+++-+..+++.|..+.. ++++..++|+++.......+ .+..+|||||. ++..| +++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p--~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie~G----IDI 728 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVP--EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIETG----IDI 728 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcc----ccc
Confidence 34799999999999999999888743 57899999999876554433 35789999996 45555 889
Q ss_pred CcccEEEecccchh
Q 012319 339 HTLSFFVLDEADRM 352 (466)
Q Consensus 339 ~~l~~lViDEad~l 352 (466)
.++.+||+..|++.
T Consensus 729 p~v~~VIi~~a~~~ 742 (926)
T TIGR00580 729 PNANTIIIERADKF 742 (926)
T ss_pred ccCCEEEEecCCCC
Confidence 99999999999864
No 259
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.33 E-value=0.58 Score=54.81 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=62.5
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.+++|++|+++-+..+++.+..+.. ++++.+++|+++.......+ .+..+|||||. ++..| +++.
T Consensus 810 gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----IierG----IDIP 878 (1147)
T PRK10689 810 GQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----IDIP 878 (1147)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhhcc----cccc
Confidence 4799999999999999999888754 46788899999886654433 35799999995 45555 8899
Q ss_pred cccEEEecccchh
Q 012319 340 TLSFFVLDEADRM 352 (466)
Q Consensus 340 ~l~~lViDEad~l 352 (466)
++.+||++.||++
T Consensus 879 ~v~~VIi~~ad~f 891 (1147)
T PRK10689 879 TANTIIIERADHF 891 (1147)
T ss_pred cCCEEEEecCCCC
Confidence 9999999999864
No 260
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.28 E-value=0.22 Score=52.37 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=19.6
Q ss_pred CCcccEEEecccchhhccC-CHHHHHHHHHhC
Q 012319 338 LHTLSFFVLDEADRMIENG-HFRELQSIIDML 368 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g-~~~~l~~Il~~l 368 (466)
+.++++|||||+|.+.... ....+..+++.+
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l 231 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSL 231 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHH
Confidence 3467899999999875322 234455555544
No 261
>PRK08116 hypothetical protein; Validated
Probab=94.19 E-value=0.18 Score=49.26 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=18.1
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
-++++|++|+|||.... .+.+.+.
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~ 139 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELI 139 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHH
Confidence 49999999999996653 4555554
No 262
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.17 E-value=0.23 Score=51.09 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
+++++||+|+|||.+.
T Consensus 57 ~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 57 NVLIYGPPGTGKTTTV 72 (394)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999654
No 263
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.06 E-value=0.11 Score=58.28 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=53.7
Q ss_pred cCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhccc
Q 012319 312 ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSL 391 (466)
Q Consensus 312 ~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~ 391 (466)
....|+++||..|..-|-.+ .+.+..|..|||||||++.......-|..++..-+
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~---ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n---------------------- 60 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTG---IIPPELITGILVLRADRIIESSQEAFILRLYRQKN---------------------- 60 (814)
T ss_pred hcCCEEEEechhhHhHHhcC---CCCHHHccEEEEeecccccccccHHHHHHHHHHhC----------------------
Confidence 44579999999996544332 38899999999999999987666777777776655
Q ss_pred CCCCceEEEEeeecCC
Q 012319 392 QRKKRQTLVFSATIAL 407 (466)
Q Consensus 392 ~~~~~Q~ll~SATl~~ 407 (466)
+..-+.+|||....
T Consensus 61 --~~gfIkafSdsP~~ 74 (814)
T TIGR00596 61 --KTGFIKAFSDNPEA 74 (814)
T ss_pred --CCcceEEecCCCcc
Confidence 45679999999863
No 264
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.05 E-value=0.12 Score=43.91 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=13.1
Q ss_pred ccEEEecccchhhccC
Q 012319 341 LSFFVLDEADRMIENG 356 (466)
Q Consensus 341 l~~lViDEad~ll~~g 356 (466)
-.+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4789999999987554
No 265
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.05 E-value=0.25 Score=47.99 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=14.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
++++.||+|+|||...
T Consensus 44 ~vll~GppGtGKTtlA 59 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVA 59 (261)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 8999999999999765
No 266
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.03 E-value=0.38 Score=45.98 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||...
T Consensus 47 ~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 47 YIYLWSREGAGRSHLL 62 (235)
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999544
No 267
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.95 E-value=0.84 Score=48.42 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECC
Q 012319 221 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 300 (466)
Q Consensus 221 TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg 300 (466)
.++|++..-++.+.+.+- .+..|-+||.+.+.+-|.|++..|.. +-++.+.+++|.
T Consensus 366 vF~gse~~K~lA~rq~v~---------------------~g~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e 421 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVA---------------------SGFKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGE 421 (593)
T ss_pred eeeecchhHHHHHHHHHh---------------------ccCCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecc
Confidence 467777777776666652 12456799999999999999999872 347889999999
Q ss_pred CCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccc
Q 012319 301 MSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 350 (466)
Q Consensus 301 ~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad 350 (466)
.+.......+ .+...|+|||- +|.+| ++|..+.+||.+..-
T Consensus 422 ~~~~qrde~~~~FR~g~IwvLicTd-----ll~RG----iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 422 RSQKQRDETMERFRIGKIWVLICTD-----LLARG----IDFKGVNLVINYDFP 466 (593)
T ss_pred cchhHHHHHHHHHhccCeeEEEehh-----hhhcc----ccccCcceEEecCCC
Confidence 7765443333 24689999994 66665 889999999997654
No 268
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.94 E-value=0.59 Score=48.47 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=16.7
Q ss_pred cEEEecCCCCchhHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQ 235 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~ 235 (466)
-+++++|||+|||....--+..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999876544433
No 269
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.91 E-value=0.41 Score=48.23 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHHhcCC--ccEEEecCCCCchhHHH
Q 012319 196 PTPIQKACIPAAAHQGK--VDIIGAAETGSGKTLAF 229 (466)
Q Consensus 196 pt~iQ~~~i~~~l~~~~--~dvl~~a~TGSGKTl~~ 229 (466)
.+|||...+..++..++ +-++++||.|.|||...
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A 39 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA 39 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH
Confidence 47999999998876653 24789999999999654
No 270
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.89 E-value=0.26 Score=58.37 Aligned_cols=125 Identities=22% Similarity=0.242 Sum_probs=77.1
Q ss_pred CcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 012319 196 PTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 275 (466)
Q Consensus 196 pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreL 275 (466)
.|+-|.++|-. .+. +++|.|.-|||||.+.+--++..+... ...-++|+|+=|+..
T Consensus 2 ~t~~Q~~ai~~---~~~-~~lv~A~AGsGKT~~lv~r~~~~~~~~--------------------~~~~~il~~tFt~~a 57 (1232)
T TIGR02785 2 WTDEQWQAIYT---RGQ-NILVSASAGSGKTAVLVERIIKKILRG--------------------VDIDRLLVVTFTNAA 57 (1232)
T ss_pred CCHHHHHHHhC---CCC-CEEEEecCCCcHHHHHHHHHHHHHhcC--------------------CCHhhEEEEeccHHH
Confidence 58899999852 344 999999999999998877777766421 111269999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch
Q 012319 276 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351 (466)
Q Consensus 276 a~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ 351 (466)
|..+...+....... +. .......-.+.+..-...-|+|-..++..+-+.....+.|. -.+=|.||...
T Consensus 58 a~e~~~ri~~~l~~~-~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 58 AREMKERIEEALQKA-LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred HHHHHHHHHHHHHHH-Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCC-CCceeCCHHHH
Confidence 998888777654321 00 00011111222333356778999988765533221222221 14456888875
No 271
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.81 E-value=0.53 Score=46.84 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=17.7
Q ss_pred cccEEEecccchhhccCCHHHHHHHHHhC
Q 012319 340 TLSFFVLDEADRMIENGHFRELQSIIDML 368 (466)
Q Consensus 340 ~l~~lViDEad~ll~~g~~~~l~~Il~~l 368 (466)
..++|||||+|.+........+..+++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~ 128 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAY 128 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhc
Confidence 45789999999883222334455555443
No 272
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.77 E-value=0.45 Score=50.16 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=14.9
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+|++||.|+|||.++.+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999977644
No 273
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.76 E-value=0.38 Score=50.50 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=16.5
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.++++|++|+|||... ..+.+.+
T Consensus 132 ~l~lyG~~G~GKTHLl-~ai~~~l 154 (440)
T PRK14088 132 PLFIYGGVGLGKTHLL-QSIGNYV 154 (440)
T ss_pred eEEEEcCCCCcHHHHH-HHHHHHH
Confidence 6899999999999544 2344444
No 274
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.67 E-value=0.52 Score=46.42 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=15.0
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.++++||||+|||....-
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 788999999999976543
No 275
>PRK09183 transposase/IS protein; Provisional
Probab=93.66 E-value=0.49 Score=46.03 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=17.3
Q ss_pred hcCCccEEEecCCCCchhHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~l 231 (466)
..+. ++++.||+|+|||.....
T Consensus 100 ~~~~-~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 100 ERNE-NIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred hcCC-eEEEEeCCCCCHHHHHHH
Confidence 4455 899999999999966543
No 276
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.66 E-value=0.56 Score=44.70 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=15.7
Q ss_pred hcCCccEEEecCCCCchhHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+. -+++.+++|+|||...
T Consensus 22 ~~g~-~~~i~G~~G~GKTtl~ 41 (230)
T PRK08533 22 PAGS-LILIEGDESTGKSILS 41 (230)
T ss_pred CCCc-EEEEECCCCCCHHHHH
Confidence 3344 8899999999999654
No 277
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.64 E-value=0.53 Score=47.12 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 38 ~lll~Gp~GtGKT~la 53 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV 53 (337)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999665
No 278
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.61 E-value=0.43 Score=48.79 Aligned_cols=20 Identities=30% Similarity=0.084 Sum_probs=15.9
Q ss_pred cEEEecCCCCchhHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPI 233 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpi 233 (466)
.+++++|||+|||....--+
T Consensus 208 ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78899999999997654433
No 279
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.52 E-value=0.32 Score=53.81 Aligned_cols=28 Identities=11% Similarity=0.392 Sum_probs=18.4
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHh
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDM 367 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~ 367 (466)
...+++||||+|.|... -+..+.++|+.
T Consensus 118 gr~KVIIIDEah~LT~~-A~NALLKtLEE 145 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH-AFNAMLKTLEE 145 (830)
T ss_pred CCceEEEEeChhhCCHH-HHHHHHHHHHh
Confidence 45689999999988532 34444445544
No 280
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.50 E-value=0.66 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=17.3
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
+++++||+|+|||.+. -.++..+
T Consensus 42 ~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 42 NVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHH
Confidence 8999999999999654 3344444
No 281
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.46 E-value=0.76 Score=48.09 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.0
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+++++++|+|||.+..-
T Consensus 97 vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 788999999999976543
No 282
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.43 E-value=0.19 Score=47.46 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
++|++||.|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 7899999999999654
No 283
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.40 E-value=0.026 Score=49.00 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
+|++.+|+|+|||...
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4899999999999543
No 284
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.38 E-value=0.33 Score=53.26 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.2
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+|++||.|+|||.+..+
T Consensus 40 a~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARI 57 (709)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 579999999999976644
No 285
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.37 E-value=0.36 Score=49.15 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=19.3
Q ss_pred HHHHHhcCC-ccEEEecCCCCchhHHHHH
Q 012319 204 IPAAAHQGK-VDIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 204 i~~~l~~~~-~dvl~~a~TGSGKTl~~~l 231 (466)
|..++..+. .++|+++|.|+|||..+-+
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARL 67 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHH
Confidence 334444332 4889999999999976643
No 286
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.35 E-value=0.29 Score=55.25 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.5
Q ss_pred cEEEecCCCCchhHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLP 232 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lp 232 (466)
-+|+++|.|+|||.+..+.
T Consensus 39 a~Lf~Gp~G~GKTt~A~~l 57 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARIL 57 (824)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3689999999999876553
No 287
>PRK04195 replication factor C large subunit; Provisional
Probab=93.34 E-value=0.25 Score=52.57 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+|+.||+|+|||...
T Consensus 41 ~lLL~GppG~GKTtla 56 (482)
T PRK04195 41 ALLLYGPPGVGKTSLA 56 (482)
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999654
No 288
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.27 E-value=0.54 Score=51.28 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.6
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+|++|+.|+|||....+
T Consensus 40 A~LFtGP~GvGKTTLAri 57 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRI 57 (700)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 469999999999976544
No 289
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.26 E-value=2.2 Score=45.97 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=90.8
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-Cc
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 292 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~ 292 (466)
-.++--|--.|||+ |+.|++..++.. ..+.++.|++.-|..+.-|+.++...+... +-
T Consensus 204 aTVFLVPRRHGKTW-f~VpiIsllL~s--------------------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~ 262 (668)
T PHA03372 204 ATVFLVPRRHGKTW-FIIPIISFLLKN--------------------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPR 262 (668)
T ss_pred ceEEEecccCCcee-hHHHHHHHHHHh--------------------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCc
Confidence 66777888999994 668888888753 347799999999998888888776544321 11
Q ss_pred EEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHH--HHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCC
Q 012319 293 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE--LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 370 (466)
Q Consensus 293 ~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~--~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~ 370 (466)
+... -..+-.|.|.-||.=-. .+...+...+.=....+|+|||||-+ ..+.+..|+-.|+.
T Consensus 263 ~~vi-------------~~k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI----~~~a~~tilgfm~q 325 (668)
T PHA03372 263 KHTI-------------ENKDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI----KKDAFNTILGFLAQ 325 (668)
T ss_pred ccee-------------eecCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc----CHHHHHHhhhhhcc
Confidence 1000 00223466666644211 11111222233466789999999977 35567788887763
Q ss_pred CCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC--CHHHHHHHhh
Q 012319 371 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL--SADFRKKLKH 417 (466)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~--~~~~~~~l~~ 417 (466)
+...+|..|.|-+. +..|+.+|+.
T Consensus 326 -----------------------~~~KiIfISS~Nsg~~sTSfL~~Lk~ 351 (668)
T PHA03372 326 -----------------------NTTKIIFISSTNTTNDATCFLTKLNN 351 (668)
T ss_pred -----------------------cCceEEEEeCCCCCCccchHHHhccC
Confidence 56788888988742 4466666654
No 290
>PLN03025 replication factor C subunit; Provisional
Probab=93.23 E-value=0.96 Score=45.28 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.5
Q ss_pred ccEEEecCCCCchhHHH
Q 012319 213 VDIIGAAETGSGKTLAF 229 (466)
Q Consensus 213 ~dvl~~a~TGSGKTl~~ 229 (466)
++++++||.|+|||...
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 37899999999999654
No 291
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.10 E-value=0.37 Score=52.41 Aligned_cols=74 Identities=20% Similarity=0.362 Sum_probs=57.7
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.|+|+..|.++++.|... ++.+..++|+++.......+. ...+|||||. ++..+ +++
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~arG----IDi 323 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAARG----LHI 323 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhhcC----CCc
Confidence 457999999999999999988764 688999999998766544443 4689999994 45554 778
Q ss_pred CcccEEEeccc
Q 012319 339 HTLSFFVLDEA 349 (466)
Q Consensus 339 ~~l~~lViDEa 349 (466)
..+.+||.-..
T Consensus 324 p~V~~VInyd~ 334 (572)
T PRK04537 324 DGVKYVYNYDL 334 (572)
T ss_pred cCCCEEEEcCC
Confidence 88988876443
No 292
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.98 E-value=0.71 Score=47.19 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-++++||.|+|||.....
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 368999999999976533
No 293
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.97 E-value=0.4 Score=52.01 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=20.0
Q ss_pred CCcccEEEecccchhhccCC-HHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGH-FRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~-~~~l~~Il~~l~ 369 (466)
+.++++||||++|.+..... ...+-.+++.+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~ 407 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLH 407 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHH
Confidence 34578999999998853322 234455555543
No 294
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.96 E-value=0.16 Score=51.39 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 201 KACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 201 ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
...+..++..+. +++++|+||||||... -.++..+
T Consensus 152 ~~~l~~~v~~~~-nilI~G~tGSGKTTll-~aLl~~i 186 (344)
T PRK13851 152 EAFLHACVVGRL-TMLLCGPTGSGKTTMS-KTLISAI 186 (344)
T ss_pred HHHHHHHHHcCC-eEEEECCCCccHHHHH-HHHHccc
Confidence 344555556666 9999999999999543 3344433
No 295
>PF13173 AAA_14: AAA domain
Probab=92.90 E-value=1.1 Score=38.32 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=20.1
Q ss_pred cccEEEecccchhhccCCHHHHHHHHHhC
Q 012319 340 TLSFFVLDEADRMIENGHFRELQSIIDML 368 (466)
Q Consensus 340 ~l~~lViDEad~ll~~g~~~~l~~Il~~l 368 (466)
.-.+|||||+|.+ .+++..+..+.+.-
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNG 87 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhc
Confidence 4468999999988 45677777777643
No 296
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.84 E-value=0.7 Score=48.11 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 38 ~ilL~GppGtGKTtLA 53 (413)
T PRK13342 38 SMILWGPPGTGKTTLA 53 (413)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7899999999999655
No 297
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.69 E-value=0.58 Score=48.85 Aligned_cols=18 Identities=39% Similarity=0.414 Sum_probs=14.9
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+++++++|+|||.+..-
T Consensus 101 vi~~vG~~GsGKTTtaak 118 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGK 118 (428)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 688999999999976533
No 298
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.64 E-value=0.49 Score=49.06 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+.|++.+|+|||.+.
T Consensus 177 SlYVsG~PGtgkt~~l 192 (529)
T KOG2227|consen 177 SLYVSGQPGTGKTALL 192 (529)
T ss_pred ceEeeCCCCcchHHHH
Confidence 8999999999999653
No 299
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.61 E-value=0.26 Score=49.26 Aligned_cols=37 Identities=24% Similarity=0.174 Sum_probs=31.7
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHH
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLA 228 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~ 228 (466)
..|...++-|...+..+...+. ++|+++.||||||..
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~-NILisGGTGSGKTTl 189 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRC-NILISGGTGSGKTTL 189 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhce-eEEEeCCCCCCHHHH
Confidence 4567899999999998877765 999999999999953
No 300
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.61 E-value=1.2 Score=49.29 Aligned_cols=93 Identities=26% Similarity=0.437 Sum_probs=65.8
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||+++|+..|..+.+.|... ++.+..++|+.........+ .+..+|+||| +++..| +++
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~rG----fDi 508 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG----LDL 508 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----ChhcCC----eee
Confidence 558999999999999999888775 67888888987765443322 3468999999 345555 889
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCCCC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 371 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~ 371 (466)
..++++|+=+++.. |+.......+..+.++
T Consensus 509 P~v~lVvi~Dadif---G~p~~~~~~iqriGRa 538 (655)
T TIGR00631 509 PEVSLVAILDADKE---GFLRSERSLIQTIGRA 538 (655)
T ss_pred CCCcEEEEeCcccc---cCCCCHHHHHHHhcCC
Confidence 99999998888853 3332333444444433
No 301
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.59 E-value=0.56 Score=50.04 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.4
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+|++||.|+|||.+..+
T Consensus 45 a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARI 62 (507)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999977644
No 302
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.56 E-value=0.27 Score=45.11 Aligned_cols=39 Identities=33% Similarity=0.417 Sum_probs=30.7
Q ss_pred HHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 188 IYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 188 l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
|.+.| ..++-|...+...+..+. .++++++||||||..+
T Consensus 4 l~~~g--~~~~~~~~~l~~~v~~g~-~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQG--TFSPLQAAYLWLAVEARK-NILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcC--CCCHHHHHHHHHHHhCCC-EEEEECCCCCCHHHHH
Confidence 33444 467888888888878777 9999999999999654
No 303
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.52 E-value=0.64 Score=43.92 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=30.8
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 286 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l 286 (466)
.+++.|++|||||.-.+-.+.+.+... +-+++|++- .+-..++.+.+..+
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~----------------------ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNF----------------------GEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHH----------------------T--EEEEES-SS-HHHHHHHHHTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhc----------------------CCcEEEEEe-cCCHHHHHHHHHHc
Confidence 889999999999965544455554331 125787773 44445666666554
No 304
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.51 E-value=0.39 Score=50.06 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=55.4
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++|+..|..++..|... ++.+..++|++....+...+ .+..+|||||. ++..| +++.
T Consensus 256 ~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~rG----iDip 322 (423)
T PRK04837 256 DRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAARG----LHIP 322 (423)
T ss_pred CeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhhcC----CCcc
Confidence 47999999999999988888654 78899999998876654444 35789999994 45554 7788
Q ss_pred cccEEEec
Q 012319 340 TLSFFVLD 347 (466)
Q Consensus 340 ~l~~lViD 347 (466)
.+++||.-
T Consensus 323 ~v~~VI~~ 330 (423)
T PRK04837 323 AVTHVFNY 330 (423)
T ss_pred ccCEEEEe
Confidence 88887653
No 305
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.44 E-value=0.57 Score=53.67 Aligned_cols=93 Identities=14% Similarity=0.280 Sum_probs=75.7
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++.||.|..+-..++...++.+.. ..+|++.||.+...+....+ .+..||+|||. ++.+| +++
T Consensus 803 gGQvfYv~NrV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIEtG----IDI 871 (1139)
T COG1197 803 GGQVFYVHNRVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIETG----IDI 871 (1139)
T ss_pred CCEEEEEecchhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eeecC----cCC
Confidence 55899999999999999999999975 56899999999976654444 35899999996 56665 889
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCCC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLPM 370 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~ 370 (466)
.+...|||+-||++. ..++.++..+..+
T Consensus 872 PnANTiIIe~AD~fG----LsQLyQLRGRVGR 899 (1139)
T COG1197 872 PNANTIIIERADKFG----LAQLYQLRGRVGR 899 (1139)
T ss_pred CCCceEEEecccccc----HHHHHHhccccCC
Confidence 999999999999874 5667777766654
No 306
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.44 E-value=0.097 Score=53.91 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=35.3
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 286 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l 286 (466)
++++.|+||||||.++++|-+-.. ...+||+=|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------------------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------------------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------------------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999988865422 124788888888887666665543
No 307
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.41 E-value=0.6 Score=52.64 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=14.1
Q ss_pred EEEecCCCCchhHHHHH
Q 012319 215 IIGAAETGSGKTLAFGL 231 (466)
Q Consensus 215 vl~~a~TGSGKTl~~~l 231 (466)
+|++||.|+|||.+..+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 48999999999977644
No 308
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.36 E-value=0.23 Score=49.64 Aligned_cols=43 Identities=28% Similarity=0.240 Sum_probs=33.2
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 193 FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 193 ~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
+..+++.|..-+..++..++ ++++|++||||||.. +.+++..+
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~-siii~G~t~sGKTt~-lnall~~I 167 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARK-SIIICGGTASGKTTL-LNALLDFI 167 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCC-cEEEECCCCCCHHHH-HHHHHHhC
Confidence 44678888888888878777 999999999999944 45555444
No 309
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.36 E-value=0.27 Score=51.55 Aligned_cols=46 Identities=28% Similarity=0.397 Sum_probs=32.8
Q ss_pred HHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 188 IYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 188 l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
+..+|+ ++.|...+..+++...--+|+.||||||||... ..+++.+
T Consensus 237 l~~Lg~---~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~l 282 (500)
T COG2804 237 LEKLGM---SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSEL 282 (500)
T ss_pred HHHhCC---CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHh
Confidence 445554 678888888887654437899999999999764 4455555
No 310
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.32 E-value=0.26 Score=53.73 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=14.9
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+|++||.|+|||.+..+
T Consensus 39 AyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARI 56 (702)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 569999999999976644
No 311
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.29 E-value=1 Score=50.22 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
+++++||+|+|||...
T Consensus 54 slLL~GPpGtGKTTLA 69 (725)
T PRK13341 54 SLILYGPPGVGKTTLA 69 (725)
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999654
No 312
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.24 E-value=0.4 Score=52.18 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.4
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+|+++|.|+|||.+..+
T Consensus 40 a~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARI 57 (624)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 678999999999987654
No 313
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.22 E-value=1 Score=48.44 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=14.7
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+|++||.|+|||....+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRL 57 (546)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999976544
No 314
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.20 E-value=0.77 Score=48.30 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=30.2
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 286 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l 286 (466)
-+++.+++|+|||...+..+. .+.. .+-++||+.- .+-..|+......+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~-~~a~----------------------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAA-RLAA----------------------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHh----------------------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 778999999999965433333 2221 1236888874 44556666555544
No 315
>PF05729 NACHT: NACHT domain
Probab=92.15 E-value=1 Score=39.53 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=17.5
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
-+++.|+.|+|||... ..++..+.
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHH
Confidence 5789999999999644 44555553
No 316
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.15 E-value=0.76 Score=49.12 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=41.3
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 288 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~ 288 (466)
-+||+|..|||||.+. |+=+..++-... .+-. ...+|||.|.|-+..-+.+.|-.++.
T Consensus 228 ilVVQGaAGSGKTtiA-LHRvAyLlY~~R---------------~~l~-~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 228 ILVVQGAAGSGKTTIA-LHRVAYLLYGYR---------------GPLQ-AKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred eEEEecCCCCCchhHH-HHHHHHHHhccc---------------cccc-cCceEEEcCcHHHHHHHHHhchhhcc
Confidence 7899999999999776 444444433211 1111 12399999999999999999988864
No 317
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.14 E-value=0.33 Score=50.46 Aligned_cols=20 Identities=25% Similarity=0.056 Sum_probs=16.2
Q ss_pred cEEEecCCCCchhHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPI 233 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpi 233 (466)
-+.+.||||+|||.....-+
T Consensus 193 vi~lvGpnG~GKTTtlakLA 212 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLA 212 (420)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78899999999998765433
No 318
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.11 E-value=0.53 Score=51.09 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=14.5
Q ss_pred EEEecCCCCchhHHHHH
Q 012319 215 IIGAAETGSGKTLAFGL 231 (466)
Q Consensus 215 vl~~a~TGSGKTl~~~l 231 (466)
+|++||.|+|||.+..+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~ 54 (584)
T PRK14952 38 YLFSGPRGCGKTSSARI 54 (584)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999987644
No 319
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.99 E-value=0.35 Score=47.13 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=30.1
Q ss_pred HHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 188 IYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 188 l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
+..+|+ ++-|.+.|..++...+..++++++||||||... -.++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 456664 556666676665533327999999999999654 3344544
No 320
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.96 E-value=0.78 Score=50.30 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.2
Q ss_pred EEEecCCCCchhHHHHH
Q 012319 215 IIGAAETGSGKTLAFGL 231 (466)
Q Consensus 215 vl~~a~TGSGKTl~~~l 231 (466)
+|++|+.|+|||.+..+
T Consensus 41 yLf~Gp~GvGKTTlAr~ 57 (647)
T PRK07994 41 YLFSGTRGVGKTTIARL 57 (647)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999976544
No 321
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.96 E-value=0.13 Score=55.63 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=50.1
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
..+|+|.+.+..+-...-..|+++.++-+|||.+.+. ++-..+. ....-+|++.||.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~---------------------~~P~~~l~v~Pt~~ 73 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSID---------------------QDPGPMLYVQPTDD 73 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEE---------------------eCCCCEEEEEEcHH
Confidence 5789999888777433323788999999999985433 3322221 11235899999999
Q ss_pred HHHHHH-HHHHHHHcCC
Q 012319 275 LALQVT-DHLKEVAKGI 290 (466)
Q Consensus 275 La~Qv~-~~l~~l~~~~ 290 (466)
+|.... ..|..+....
T Consensus 74 ~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 74 AAKDFSKERLDPMIRAS 90 (557)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 999876 4666665533
No 322
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.94 E-value=1 Score=46.57 Aligned_cols=18 Identities=33% Similarity=0.266 Sum_probs=14.9
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+|++||.|+|||.++.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999977644
No 323
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.88 E-value=0.19 Score=53.08 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=36.3
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 286 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l 286 (466)
++++.||||||||..|++|.+-.. .+ -+||+=|--+|+......++..
T Consensus 46 h~lvig~tgSGKt~~~viP~ll~~------------------------~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 46 HVLVIGPTGSGKTTSFVIPNLLNY------------------------PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred EEEEEeCCCCCccceeeHhHHHhc------------------------cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 799999999999999999976321 01 3777788888877776666654
No 324
>PRK10867 signal recognition particle protein; Provisional
Probab=91.78 E-value=1.6 Score=45.60 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=14.8
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+++++++|+|||.+..-
T Consensus 102 vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 678899999999976533
No 325
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.77 E-value=0.77 Score=48.74 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.1
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+|++||.|+|||.+..+
T Consensus 37 a~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 37 SILLVGASGVGKTTCARI 54 (491)
T ss_pred eEEEECCCCccHHHHHHH
Confidence 589999999999976543
No 326
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.76 E-value=0.34 Score=48.89 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 202 ACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 202 ~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
..+..++..+. +++++|+||||||... -.++..+
T Consensus 151 ~~L~~~v~~~~-nili~G~tgSGKTTll-~aL~~~i 184 (332)
T PRK13900 151 EFLEHAVISKK-NIIISGGTSTGKTTFT-NAALREI 184 (332)
T ss_pred HHHHHHHHcCC-cEEEECCCCCCHHHHH-HHHHhhC
Confidence 34455555666 9999999999999543 3444444
No 327
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.75 E-value=1.1 Score=50.14 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 202 ACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 202 ~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
+++..+....+.++|+.||+|+|||...
T Consensus 197 ~~i~iL~r~~~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 197 RAIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 3444443333449999999999999764
No 328
>PTZ00110 helicase; Provisional
Probab=91.52 E-value=0.75 Score=49.75 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=55.4
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCcccc
Q 012319 262 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVE 337 (466)
Q Consensus 262 ~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~ 337 (466)
.+.++||.|+|+.-|..++..|... ++.+..++|+.........+. ....|||||. .+..+ ++
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~rG----ID 442 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VASRG----LD 442 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhhcC----CC
Confidence 3568999999999999998888643 678889999988766544332 4678999994 44544 77
Q ss_pred CCcccEEEe
Q 012319 338 LHTLSFFVL 346 (466)
Q Consensus 338 l~~l~~lVi 346 (466)
+..|.+||.
T Consensus 443 i~~v~~VI~ 451 (545)
T PTZ00110 443 VKDVKYVIN 451 (545)
T ss_pred cccCCEEEE
Confidence 889998875
No 329
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.51 E-value=0.6 Score=48.80 Aligned_cols=71 Identities=20% Similarity=0.390 Sum_probs=55.3
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
..++||.++|++-|..++..|... ++.+..++|+++.......+. +..+|||||- .+..| +++
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~~G----iDi 311 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAARG----IDI 311 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccccC----ccC
Confidence 358999999999999999988763 788999999998766654443 4689999993 44444 778
Q ss_pred CcccEEEe
Q 012319 339 HTLSFFVL 346 (466)
Q Consensus 339 ~~l~~lVi 346 (466)
..+.+||.
T Consensus 312 p~v~~VI~ 319 (434)
T PRK11192 312 DDVSHVIN 319 (434)
T ss_pred CCCCEEEE
Confidence 88888873
No 330
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.41 E-value=0.52 Score=44.67 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=21.7
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
..-+++|+||||.|- .|-...+.+.++...
T Consensus 112 grhKIiILDEADSMT-~gAQQAlRRtMEiyS 141 (333)
T KOG0991|consen 112 GRHKIIILDEADSMT-AGAQQALRRTMEIYS 141 (333)
T ss_pred CceeEEEeeccchhh-hHHHHHHHHHHHHHc
Confidence 445789999999996 566666666665554
No 331
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.36 E-value=0.64 Score=50.38 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=14.8
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+|++||.|+|||.+.-+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468899999999977644
No 332
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.33 E-value=0.72 Score=50.29 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.2
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+|++||.|+|||....+
T Consensus 48 a~L~~Gp~GvGKTt~Ar~ 65 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARI 65 (598)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999976644
No 333
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.27 E-value=1.5 Score=43.00 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=15.3
Q ss_pred cEEEecCCCCchhHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPI 233 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpi 233 (466)
-+++++++|+|||.+..--+
T Consensus 74 vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 67788999999997654433
No 334
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.27 E-value=1 Score=45.75 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=17.1
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
-+|++||.|+|||... ..+...++
T Consensus 47 a~L~~G~~G~GKttlA-~~lA~~Ll 70 (351)
T PRK09112 47 ALLFEGPEGIGKATLA-FHLANHIL 70 (351)
T ss_pred eEeeECCCCCCHHHHH-HHHHHHHc
Confidence 4899999999999554 33444553
No 335
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.25 E-value=1.5 Score=43.63 Aligned_cols=116 Identities=18% Similarity=0.206 Sum_probs=68.3
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH-----------HHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE-----------LAL 277 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre-----------La~ 277 (466)
..++ -+++.||.|+||| ..|=.+.+++--+ ..+......||=..... |+.
T Consensus 175 t~NR-liLlhGPPGTGKT-SLCKaLaQkLSIR-----------------~~~~y~~~~liEinshsLFSKWFsESgKlV~ 235 (423)
T KOG0744|consen 175 TWNR-LILLHGPPGTGKT-SLCKALAQKLSIR-----------------TNDRYYKGQLIEINSHSLFSKWFSESGKLVA 235 (423)
T ss_pred eeee-EEEEeCCCCCChh-HHHHHHHHhheee-----------------ecCccccceEEEEehhHHHHHHHhhhhhHHH
Confidence 3344 7899999999999 4445566665211 11111223444444443 677
Q ss_pred HHHHHHHHHHcCCCcEEEEEECCCCH------------------------HHHHHHHhcCCcEEEeCcHHHHHHHhCCCC
Q 012319 278 QVTDHLKEVAKGINVRVVPIVGGMST------------------------EKQERLLKARPELVVGTPGRLWELMSGGEK 333 (466)
Q Consensus 278 Qv~~~l~~l~~~~~~~v~~~~gg~~~------------------------~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~ 333 (466)
++++.+..+....+.-|++++..... --|...++..++++|-|..-|.+-
T Consensus 236 kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~s------ 309 (423)
T KOG0744|consen 236 KMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDS------ 309 (423)
T ss_pred HHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHH------
Confidence 77888888877767666665543210 124455566677877776665443
Q ss_pred ccccCCcccEEEecccchhhccC
Q 012319 334 HLVELHTLSFFVLDEADRMIENG 356 (466)
Q Consensus 334 ~~~~l~~l~~lViDEad~ll~~g 356 (466)
++.-.||-||-..-.|
T Consensus 310 -------iD~AfVDRADi~~yVG 325 (423)
T KOG0744|consen 310 -------IDVAFVDRADIVFYVG 325 (423)
T ss_pred -------HHHHhhhHhhheeecC
Confidence 3445678888654444
No 336
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.24 E-value=0.56 Score=47.51 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=31.8
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 185 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
+..+...|+ +++.+...+..++..+. +++++++||||||...
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~-~ili~G~tGsGKTTll 195 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARL-AFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCC-eEEEECCCCCCHHHHH
Confidence 445556665 56777777877777776 9999999999998543
No 337
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.21 E-value=5.1 Score=37.02 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=19.9
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.|++..++|.|||.+.+--++..+
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~ 47 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAV 47 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHH
Confidence 899999999999988766666555
No 338
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.17 E-value=1.4 Score=48.03 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=14.6
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+|++||.|+|||.+..+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 458999999999977644
No 339
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=91.15 E-value=0.88 Score=47.99 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=54.3
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
..++||.++|+.-|..++..|... ++.+..++|+++.......+. ...+|||||. .+..+ +++
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~rG----iDi 311 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAARG----LDI 311 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHhcC----CCc
Confidence 357999999999999988888654 688899999998765544432 4679999994 44444 778
Q ss_pred CcccEEEe
Q 012319 339 HTLSFFVL 346 (466)
Q Consensus 339 ~~l~~lVi 346 (466)
..+.+||.
T Consensus 312 p~v~~VI~ 319 (456)
T PRK10590 312 EELPHVVN 319 (456)
T ss_pred ccCCEEEE
Confidence 88888774
No 340
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.09 E-value=0.89 Score=44.97 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||.|+|||...
T Consensus 32 ~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLA 47 (305)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999544
No 341
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.05 E-value=1.1 Score=44.63 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=17.2
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.+++.|++|+|||.... .+.+.+
T Consensus 158 gl~L~G~~G~GKThLa~-Aia~~l 180 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLA-AIANEL 180 (306)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHH
Confidence 79999999999996653 334444
No 342
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.03 E-value=0.38 Score=49.26 Aligned_cols=24 Identities=33% Similarity=0.177 Sum_probs=18.5
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
.+++++|||||||... -.++.++.
T Consensus 151 lilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 151 LGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHH
Confidence 8999999999999654 44566653
No 343
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.01 E-value=1 Score=46.71 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=18.1
Q ss_pred hcCCccEEEecCCCCchhHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~l 231 (466)
..+. |++..||+|+|||..|.-
T Consensus 207 e~~~-Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 207 EPNY-NLIELGPKGTGKSYIYNN 228 (449)
T ss_pred hcCC-cEEEECCCCCCHHHHHHH
Confidence 5555 999999999999977653
No 344
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.98 E-value=0.4 Score=51.25 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.6
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+|++||.|+|||.+..+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRI 57 (509)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 368999999999976544
No 345
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.83 E-value=0.53 Score=43.00 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=19.1
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
..+. ++++.|++|+|||..... +...+.
T Consensus 45 ~~~~-~l~l~G~~G~GKThLa~a-i~~~~~ 72 (178)
T PF01695_consen 45 ENGE-NLILYGPPGTGKTHLAVA-IANEAI 72 (178)
T ss_dssp SC---EEEEEESTTSSHHHHHHH-HHHHHH
T ss_pred ccCe-EEEEEhhHhHHHHHHHHH-HHHHhc
Confidence 3444 999999999999977543 444443
No 346
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.80 E-value=1.1 Score=42.76 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=33.0
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 287 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~ 287 (466)
.+++.|++|+|||...+-.+.+.+ .. +-++||++ +-+-..++.+.+..+.
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~-~~----------------------ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGL-QM----------------------GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH-Hc----------------------CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 789999999999965544444443 11 33688887 4555667777666553
No 347
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.79 E-value=0.59 Score=48.28 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||+..
T Consensus 167 gvLL~GppGtGKT~lA 182 (389)
T PRK03992 167 GVLLYGPPGTGKTLLA 182 (389)
T ss_pred ceEEECCCCCChHHHH
Confidence 7999999999999654
No 348
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.78 E-value=0.45 Score=51.64 Aligned_cols=47 Identities=36% Similarity=0.497 Sum_probs=31.2
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 187 SIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 187 ~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.|..+|| .+-|...|..++...+..++++||||||||... ..++..+
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 3556765 456666666665533228899999999999764 3355554
No 349
>PRK10436 hypothetical protein; Provisional
Probab=90.78 E-value=0.48 Score=49.96 Aligned_cols=46 Identities=37% Similarity=0.440 Sum_probs=29.1
Q ss_pred HHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 188 IYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 188 l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
|..+|+ .+-|...|..++...+.-+|++||||||||... ..++..+
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 445554 455666665554422228999999999999764 3345554
No 350
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.67 E-value=1.2 Score=46.06 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=20.4
Q ss_pred cccEEEecccchhhcc-CCHHHHHHHHHhCC
Q 012319 340 TLSFFVLDEADRMIEN-GHFRELQSIIDMLP 369 (466)
Q Consensus 340 ~l~~lViDEad~ll~~-g~~~~l~~Il~~l~ 369 (466)
++++|+||.++.+... .....+-.+++.+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~ 205 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALL 205 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHH
Confidence 7889999999988533 22445555666655
No 351
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=90.66 E-value=1.6 Score=43.71 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCCCcHHHHHHHHHHHh---cCC-c-cEEEecCCCCchhHHHHHHHHHHHH
Q 012319 193 FKEPTPIQKACIPAAAH---QGK-V-DIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 193 ~~~pt~iQ~~~i~~~l~---~~~-~-dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
+..++|+|..++..+.. .++ . -+++.||.|+||+... ..+...++
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~Ll 51 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVL 51 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHh
Confidence 45678999888877643 222 1 3789999999998644 33444443
No 352
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.60 E-value=1.2 Score=43.31 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=14.5
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+++.|++|+|||...+-
T Consensus 38 ~~lI~G~pGtGKT~l~~q 55 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQ 55 (259)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 789999999999954433
No 353
>PRK08506 replicative DNA helicase; Provisional
Probab=90.51 E-value=1.7 Score=46.10 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=18.0
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
..+. -+++.|+||.|||. |++-+..++
T Consensus 190 ~~G~-LivIaarpg~GKT~-fal~ia~~~ 216 (472)
T PRK08506 190 NKGD-LIIIAARPSMGKTT-LCLNMALKA 216 (472)
T ss_pred CCCc-eEEEEcCCCCChHH-HHHHHHHHH
Confidence 3443 67889999999994 444444444
No 354
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.44 E-value=1 Score=47.71 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=56.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+..+||.++|+..|.+++..|... ++.+..++|+++.......+ ....+|||||- .+..| +++
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-----~~~~G----ID~ 292 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-----AFGMG----INK 292 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-----hhhcc----CCc
Confidence 346799999999999999988764 78889999999876554333 35789999995 23333 778
Q ss_pred CcccEEEeccc
Q 012319 339 HTLSFFVLDEA 349 (466)
Q Consensus 339 ~~l~~lViDEa 349 (466)
..+++||.-..
T Consensus 293 p~V~~VI~~~~ 303 (470)
T TIGR00614 293 PDVRFVIHYSL 303 (470)
T ss_pred ccceEEEEeCC
Confidence 88888885544
No 355
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=90.37 E-value=0.9 Score=47.93 Aligned_cols=73 Identities=15% Similarity=0.297 Sum_probs=55.4
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.|+|+.-|..++..|... ++.+..++|+++...+...+. ...+|||||- .+..| +++.
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~~rG----iDi~ 309 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VAARG----LDIK 309 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----ccccc----cchh
Confidence 36999999999999999888764 788999999998766544443 4679999994 34444 6778
Q ss_pred cccEEEeccc
Q 012319 340 TLSFFVLDEA 349 (466)
Q Consensus 340 ~l~~lViDEa 349 (466)
.+.+||.-..
T Consensus 310 ~v~~VI~~d~ 319 (460)
T PRK11776 310 ALEAVINYEL 319 (460)
T ss_pred cCCeEEEecC
Confidence 8888775433
No 356
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=90.33 E-value=3.1 Score=44.29 Aligned_cols=139 Identities=14% Similarity=0.083 Sum_probs=77.7
Q ss_pred CCcHHHHHHHHHHHh-----cCC---ccEEEecCCCCchhHHHH-HHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeE
Q 012319 195 EPTPIQKACIPAAAH-----QGK---VDIIGAAETGSGKTLAFG-LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 265 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~-----~~~---~dvl~~a~TGSGKTl~~~-lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (466)
.+-|+|.-++-.++- .+. .-.++.-|-+-|||.... |.+...++.. ..+-+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--------------------~~~~~ 120 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--------------------RSGAG 120 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--------------------hcCCc
Confidence 678999999888761 010 145777888899986544 4444444322 12447
Q ss_pred EEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCc---EEEeCcHHHHHHHhCCCCccccCCccc
Q 012319 266 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPE---LVVGTPGRLWELMSGGEKHLVELHTLS 342 (466)
Q Consensus 266 vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~d---IiV~TP~~L~~~l~~~~~~~~~l~~l~ 342 (466)
..|++|+.+-+.+.+..++....... . .........+ |.+.--...+..+... ....+=.+..
T Consensus 121 ~~i~A~s~~qa~~~F~~ar~mv~~~~-~------------l~~~~~~q~~s~~i~~~~~~s~ik~~aa~-~~~~Dg~~~~ 186 (546)
T COG4626 121 IYILAPSVEQAANSFNPARDMVKRDD-D------------LRDLCNVQTHSRTITHRKTDSTIKAVAAD-PNTVDGLNSV 186 (546)
T ss_pred EEEEeccHHHHHHhhHHHHHHHHhCc-c------------hhhhhccccceeEEEecccceeeeeeccC-CCcccCCCcc
Confidence 99999999999999888887654332 0 0001111112 2222222222333322 1223334557
Q ss_pred EEEecccchhhccCCHHHHHHHHHhCC
Q 012319 343 FFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 343 ~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+.||||.|...+.+ ..+..+..-+-
T Consensus 187 ~~I~DEih~f~~~~--~~~~~~~~g~~ 211 (546)
T COG4626 187 GAIIDELHLFGKQE--DMYSEAKGGLG 211 (546)
T ss_pred eEEEehhhhhcCHH--HHHHHHHhhhc
Confidence 89999999765432 55555555443
No 357
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.32 E-value=2 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=17.2
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
-+|++||.|+||+... ..+...++
T Consensus 43 A~Lf~Gp~G~GK~~lA-~~~A~~Ll 66 (365)
T PRK07471 43 AWLIGGPQGIGKATLA-YRMARFLL 66 (365)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4789999999998654 34445554
No 358
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.25 E-value=0.34 Score=52.79 Aligned_cols=55 Identities=18% Similarity=0.110 Sum_probs=41.1
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
++++.||||||||..|++|-+-.. +.-+||+=|--|+........+++ |.+
T Consensus 160 hvLviapTgSGKg~g~VIPnLL~~-------------------------~~S~VV~DpKGEl~~~Ta~~R~~~----G~~ 210 (606)
T PRK13897 160 HALLFAPTGSGKGVGFVIPNLLFW-------------------------EDSVVVHDIKLENYELTSGWREKQ----GQK 210 (606)
T ss_pred eEEEEcCCCCCcceEEehhhHHhC-------------------------CCCEEEEeCcHHHHHHHHHHHHHC----CCe
Confidence 899999999999999999987543 113788888888887777666554 445
Q ss_pred EEEE
Q 012319 294 VVPI 297 (466)
Q Consensus 294 v~~~ 297 (466)
|.++
T Consensus 211 V~vf 214 (606)
T PRK13897 211 VFVW 214 (606)
T ss_pred EEEE
Confidence 5444
No 359
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.23 E-value=2.6 Score=44.87 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=13.7
Q ss_pred EEEecCCCCchhHHHHH
Q 012319 215 IIGAAETGSGKTLAFGL 231 (466)
Q Consensus 215 vl~~a~TGSGKTl~~~l 231 (466)
+|++||.|+|||.+..+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999876543
No 360
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.16 E-value=1.4 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=16.5
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
-+|++||.|+|||.+..+ +...+
T Consensus 38 a~Lf~GppGtGKTTlA~~-lA~~l 60 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL-IAMAV 60 (504)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHH
Confidence 349999999999977533 33444
No 361
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=90.14 E-value=0.99 Score=49.64 Aligned_cols=70 Identities=21% Similarity=0.394 Sum_probs=54.1
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.|+|+.-|.+++..|... ++.+..++|+++.......+. ...+|||||. ++..+ +++.
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-----v~arG----IDip 312 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-----VAARG----LDVE 312 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----hHhcC----CCcc
Confidence 46999999999999999888764 678899999998766544433 4789999994 44444 6778
Q ss_pred cccEEEe
Q 012319 340 TLSFFVL 346 (466)
Q Consensus 340 ~l~~lVi 346 (466)
.+.+||.
T Consensus 313 ~V~~VI~ 319 (629)
T PRK11634 313 RISLVVN 319 (629)
T ss_pred cCCEEEE
Confidence 8888774
No 362
>PHA00729 NTP-binding motif containing protein
Probab=90.06 E-value=1.2 Score=42.17 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=15.6
Q ss_pred cCCccEEEecCCCCchhHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++++.|++|+|||..+
T Consensus 15 ~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred CCeEEEEEECCCCCCHHHHH
Confidence 33348999999999999544
No 363
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.06 E-value=0.62 Score=50.37 Aligned_cols=45 Identities=27% Similarity=0.279 Sum_probs=34.9
Q ss_pred CCcHHHHHHHHHH---HhcCCccEEEecCCCCchhHHHHHHHHHHHHHH
Q 012319 195 EPTPIQKACIPAA---AHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEE 240 (466)
Q Consensus 195 ~pt~iQ~~~i~~~---l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~ 240 (466)
.|+.||...+..+ |..|+ --|+-+|||+|||+..+-.++..|-..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~Gk-IgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGK-IGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCC-eeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 7899997766544 45676 779999999999998877777766543
No 364
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=90.04 E-value=0.6 Score=53.16 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=29.7
Q ss_pred CccccCCCCHHHHHHHHHCCCC-CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 173 DAWNELRLHPLLMKSIYRLGFK-EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~-~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..|.++|.-..+...|+.+-+. -++|-+-. +.-+..-+ -|+.++|.|||||+..
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~--~~~itpPr-gvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFD--NFNITPPR-GVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhh--hcccCCCc-ceeecCCCCCchhHHH
Confidence 4666777666666666665321 11111110 11111222 5999999999999764
No 365
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.02 E-value=2 Score=44.09 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.7
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+++.+++|+|||...+.
T Consensus 84 lvLI~G~pG~GKStLllq 101 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQ 101 (372)
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 789999999999965433
No 366
>PTZ00293 thymidine kinase; Provisional
Probab=90.01 E-value=1.3 Score=41.55 Aligned_cols=16 Identities=25% Similarity=0.036 Sum_probs=12.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-.++.||.+||||.-.
T Consensus 6 i~vi~GpMfSGKTteL 21 (211)
T PTZ00293 6 ISVIIGPMFSGKTTEL 21 (211)
T ss_pred EEEEECCCCChHHHHH
Confidence 5578999999999443
No 367
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.99 E-value=7.3 Score=41.40 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH------h----cCCccEEEecCCCCchhHHH
Q 012319 178 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAA------H----QGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 178 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l------~----~~~~dvl~~a~TGSGKTl~~ 229 (466)
+|++..-+..+...|.-.-.+.=.+.+..-. . .+-+.+++.+|.|||||..+
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLA 555 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALA 555 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHH
Confidence 4677776666666554433333222222110 1 12247899999999999544
No 368
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.98 E-value=0.69 Score=45.90 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=17.6
Q ss_pred c-EEEecCCCCchhHHHHHHHHHHHH
Q 012319 214 D-IIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 214 d-vl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
. ++++||.|+|||.+. +.+...++
T Consensus 25 halL~~Gp~G~Gktt~a-~~lA~~l~ 49 (325)
T COG0470 25 HALLFYGPPGVGKTTAA-LALAKELL 49 (325)
T ss_pred ceeeeeCCCCCCHHHHH-HHHHHHHh
Confidence 5 999999999999765 33444443
No 369
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=89.93 E-value=2.6 Score=42.41 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHhcCC---ccEEEecCCCCchhHHH
Q 012319 197 TPIQKACIPAAAHQGK---VDIIGAAETGSGKTLAF 229 (466)
Q Consensus 197 t~iQ~~~i~~~l~~~~---~dvl~~a~TGSGKTl~~ 229 (466)
+|||...+..+....+ +-++++||.|.|||...
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la 38 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFA 38 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHH
Confidence 5778777777653321 25789999999999655
No 370
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.85 E-value=0.98 Score=47.86 Aligned_cols=74 Identities=16% Similarity=0.322 Sum_probs=57.5
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCcc
Q 012319 260 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHL 335 (466)
Q Consensus 260 ~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~ 335 (466)
.....++||.|-|+.-|.++...+... ++.+.++||+.+..+....+. ..+.|||||. ...++
T Consensus 338 ~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd-----VAaRG---- 404 (519)
T KOG0331|consen 338 SDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD-----VAARG---- 404 (519)
T ss_pred ccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc-----ccccc----
Confidence 345569999999999999998888764 578999999999877766665 3689999995 22333
Q ss_pred ccCCcccEEEe
Q 012319 336 VELHTLSFFVL 346 (466)
Q Consensus 336 ~~l~~l~~lVi 346 (466)
+++..|++||-
T Consensus 405 LDi~dV~lVIn 415 (519)
T KOG0331|consen 405 LDVPDVDLVIN 415 (519)
T ss_pred CCCccccEEEe
Confidence 77788887763
No 371
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=89.82 E-value=0.74 Score=42.87 Aligned_cols=33 Identities=42% Similarity=0.670 Sum_probs=28.2
Q ss_pred CCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecc
Q 012319 313 RPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 348 (466)
Q Consensus 313 ~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDE 348 (466)
..++-||||+|+..++..+. +.++.+.+||+|=
T Consensus 196 ~v~~gIgTp~Ri~~lv~~~~---f~~~~lk~iIlD~ 228 (271)
T KOG3089|consen 196 VVHLGIGTPGRIKELVKQGG---FNLSPLKFIILDW 228 (271)
T ss_pred ceeEeecCcHHHHHHHHhcC---CCCCcceeEEeec
Confidence 46889999999999997654 7789999999983
No 372
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.80 E-value=1.1 Score=48.98 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=14.7
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+|++||.|+|||.+..+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999976544
No 373
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=89.77 E-value=1.8 Score=45.19 Aligned_cols=85 Identities=20% Similarity=0.168 Sum_probs=44.7
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe--CcHHHHHHHHHHHHHHHcCCC
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT--PTRELALQVTDHLKEVAKGIN 291 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~--PtreLa~Qv~~~l~~l~~~~~ 291 (466)
-+++++++|+|||.+..--+. ++ .. .+.++++++ |.|.-|.++ ++.++...+
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l-~~---------------------~G~kV~lV~~D~~R~aA~eQ---Lk~~a~~~~ 155 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YY-QR---------------------KGFKPCLVCADTFRAGAFDQ---LKQNATKAR 155 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HH-HH---------------------CCCCEEEEcCcccchhHHHH---HHHHhhccC
Confidence 678999999999966533222 22 21 122455544 345555443 333444456
Q ss_pred cEEEEEECCCCHHH----HHHHH-hcCCc-EEEeCcHHH
Q 012319 292 VRVVPIVGGMSTEK----QERLL-KARPE-LVVGTPGRL 324 (466)
Q Consensus 292 ~~v~~~~gg~~~~~----~~~~l-~~~~d-IiV~TP~~L 324 (466)
+.+.....+..... ....+ ..++| |||=|||++
T Consensus 156 vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 156 IPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRH 194 (429)
T ss_pred CeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 66655444433211 11112 23455 678899987
No 374
>PRK06904 replicative DNA helicase; Validated
Probab=89.69 E-value=3.1 Score=44.09 Aligned_cols=131 Identities=21% Similarity=0.247 Sum_probs=63.2
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 288 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~ 288 (466)
..+. -+|+.|++|.|||. |++-+..++... .+..|+|++.- .-..|+..++.....
T Consensus 219 ~~G~-LiiIaarPg~GKTa-falnia~~~a~~---------------------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s 274 (472)
T PRK06904 219 QPSD-LIIVAARPSMGKTT-FAMNLCENAAMA---------------------SEKPVLVFSLE-MPAEQIMMRMLASLS 274 (472)
T ss_pred CCCc-EEEEEeCCCCChHH-HHHHHHHHHHHh---------------------cCCeEEEEecc-CCHHHHHHHHHHhhC
Confidence 4554 66778999999995 545555444221 12346666532 234455555444332
Q ss_pred CCCcEEEEE-EC-CCCHHHHH------HHHhcCCcEEEe-----CcHHHHHHHhCCCCccccCCcccEEEecccchhhcc
Q 012319 289 GINVRVVPI-VG-GMSTEKQE------RLLKARPELVVG-----TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 355 (466)
Q Consensus 289 ~~~~~v~~~-~g-g~~~~~~~------~~l~~~~dIiV~-----TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~ 355 (466)
+.. ...+ .| ..+..... ..+...+.+.|- |+..+...+..- ...-..+++||||-.+.|-..
T Consensus 275 ~v~--~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~---~~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 275 RVD--QTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRV---YRENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred CCC--HHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH---HHhCCCCCEEEEecHHhcCCC
Confidence 222 2122 23 23333321 122234446553 444444333110 011235889999998877432
Q ss_pred C----CHHHHHHHHHhC
Q 012319 356 G----HFRELQSIIDML 368 (466)
Q Consensus 356 g----~~~~l~~Il~~l 368 (466)
+ ....+..|...|
T Consensus 350 ~~~~~r~~ei~~isr~L 366 (472)
T PRK06904 350 GFEDNRTLEIAEISRSL 366 (472)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 2 233455554444
No 375
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.63 E-value=1.2 Score=47.86 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=14.5
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+|++||.|+|||.+..+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999976544
No 376
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=89.59 E-value=0.97 Score=47.45 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=63.0
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCcccc
Q 012319 262 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVE 337 (466)
Q Consensus 262 ~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~ 337 (466)
..|.+||.+.|+.-|.-+++.|.++ +++++.++||.+.+.....+. +..+|+|||. ...+| ++
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----vAgRG----ID 582 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD-----VAGRG----ID 582 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----ccccC----CC
Confidence 3567899999999888888777776 799999999998876655543 3679999995 22232 77
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCCCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 371 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~ 371 (466)
..++++|| ...+...+..-+..+..+
T Consensus 583 IpnVSlVi--------nydmaksieDYtHRIGRT 608 (673)
T KOG0333|consen 583 IPNVSLVI--------NYDMAKSIEDYTHRIGRT 608 (673)
T ss_pred CCccceee--------ecchhhhHHHHHHHhccc
Confidence 78887765 234455555555555544
No 377
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.56 E-value=1.3 Score=47.57 Aligned_cols=68 Identities=19% Similarity=0.442 Sum_probs=52.6
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccCCc
Q 012319 265 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHT 340 (466)
Q Consensus 265 ~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 340 (466)
++||.+.|+..|..++..+... ++.+..++|+.......+.+. ...+|+|||.-. .+| +++..
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva-----aRG----iDi~~ 341 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA-----ARG----LDIPD 341 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh-----hcc----CCccc
Confidence 6999999999999988777765 789999999999876655553 578999999633 333 56666
Q ss_pred ccEEE
Q 012319 341 LSFFV 345 (466)
Q Consensus 341 l~~lV 345 (466)
+.+||
T Consensus 342 v~~Vi 346 (513)
T COG0513 342 VSHVI 346 (513)
T ss_pred cceeE
Confidence 66664
No 378
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.55 E-value=0.53 Score=48.01 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=17.6
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.+++++|||||||... -.++..+
T Consensus 136 lilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 136 IVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH
Confidence 9999999999999654 3344444
No 379
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.55 E-value=2.4 Score=40.20 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=16.4
Q ss_pred cEEEecCCCCchhHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQ 235 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~ 235 (466)
-+++.+++|+|||...+..+..
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 7888999999999655444433
No 380
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=89.53 E-value=1.7 Score=43.58 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=17.0
Q ss_pred HHhcCCccEEEecCCCCchhHHH
Q 012319 207 AAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 207 ~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
.+..++ ++++.+++|+|||...
T Consensus 60 ~l~~~~-~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 60 GFAYDR-RVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHhcCC-cEEEEeCCCChHHHHH
Confidence 334455 9999999999999654
No 381
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=89.50 E-value=0.88 Score=45.73 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.7
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
.+++.||+|+|||....
T Consensus 53 ~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 53 HVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cEEEECCCCccHHHHHH
Confidence 79999999999996553
No 382
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.48 E-value=1.3 Score=46.94 Aligned_cols=72 Identities=13% Similarity=0.295 Sum_probs=55.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
..++||.++++.-|..++..|... ++.+..++|+.....+...+. +...|||||. .+..| +++
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-----~l~~G----IDi 401 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-----VAGRG----IHI 401 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccccC----Ccc
Confidence 348999999999999888877654 678888999988766544432 4679999993 45544 788
Q ss_pred CcccEEEec
Q 012319 339 HTLSFFVLD 347 (466)
Q Consensus 339 ~~l~~lViD 347 (466)
..++++|.-
T Consensus 402 ~~v~~VI~~ 410 (475)
T PRK01297 402 DGISHVINF 410 (475)
T ss_pred cCCCEEEEe
Confidence 999988863
No 383
>PF12846 AAA_10: AAA-like domain
Probab=89.34 E-value=1.1 Score=43.59 Aligned_cols=41 Identities=24% Similarity=0.425 Sum_probs=29.3
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 277 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~ 277 (466)
+++++|+||||||.... .++..++.. +..++|+=|..+...
T Consensus 3 h~~i~G~tGsGKT~~~~-~l~~~~~~~----------------------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLK-NLLEQLIRR----------------------GPRVVIFDPKGDYSP 43 (304)
T ss_pred eEEEECCCCCcHHHHHH-HHHHHHHHc----------------------CCCEEEEcCCchHHH
Confidence 89999999999997765 555555432 356778777766554
No 384
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=0.32 Score=49.56 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.6
Q ss_pred ccEEEecCCCCchhHHH
Q 012319 213 VDIIGAAETGSGKTLAF 229 (466)
Q Consensus 213 ~dvl~~a~TGSGKTl~~ 229 (466)
+|+++.+|.|+|||+..
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 38999999999999654
No 385
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.14 E-value=4.3 Score=40.16 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|+.|+|||.+.
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999654
No 386
>PTZ00424 helicase 45; Provisional
Probab=89.11 E-value=1.5 Score=45.18 Aligned_cols=71 Identities=18% Similarity=0.365 Sum_probs=54.4
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
..++||.++|+.-|..++..+... ++.+..++|+.+...+...+. +..+|||||. .+..| +++
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l~~G----iDi 333 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHER----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LLARG----IDV 333 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----cccCC----cCc
Confidence 347999999999998888877653 678899999998766544332 4689999994 44444 778
Q ss_pred CcccEEEe
Q 012319 339 HTLSFFVL 346 (466)
Q Consensus 339 ~~l~~lVi 346 (466)
..+.+||.
T Consensus 334 p~v~~VI~ 341 (401)
T PTZ00424 334 QQVSLVIN 341 (401)
T ss_pred ccCCEEEE
Confidence 88988875
No 387
>PRK05973 replicative DNA helicase; Provisional
Probab=89.11 E-value=0.78 Score=43.94 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=22.6
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQ 235 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~ 235 (466)
.+||... ++--+ ..+. -+++.|++|+|||...+-.+.+
T Consensus 50 ~~~p~~~-l~GGl-~~Gs-l~LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 50 ATTPAEE-LFSQL-KPGD-LVLLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred CCCCHHH-hcCCC-CCCC-EEEEEeCCCCCHHHHHHHHHHH
Confidence 4555333 33333 3444 7888999999999554333333
No 388
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=89.10 E-value=1.8 Score=43.75 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=34.8
Q ss_pred HHHHHHhcCC-ccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHH
Q 012319 203 CIPAAAHQGK-VDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 281 (466)
Q Consensus 203 ~i~~~l~~~~-~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~ 281 (466)
.+..++.++. +.+|+++|.|+|||...-+-+.. ......+.|=+.-|..-...+..
T Consensus 152 llrs~ieq~~ipSmIlWGppG~GKTtlArlia~t-----------------------sk~~SyrfvelSAt~a~t~dvR~ 208 (554)
T KOG2028|consen 152 LLRSLIEQNRIPSMILWGPPGTGKTTLARLIAST-----------------------SKKHSYRFVELSATNAKTNDVRD 208 (554)
T ss_pred HHHHHHHcCCCCceEEecCCCCchHHHHHHHHhh-----------------------cCCCceEEEEEeccccchHHHHH
Confidence 3444444432 47899999999999655332211 11223466667777666666555
Q ss_pred HHHH
Q 012319 282 HLKE 285 (466)
Q Consensus 282 ~l~~ 285 (466)
.|..
T Consensus 209 ife~ 212 (554)
T KOG2028|consen 209 IFEQ 212 (554)
T ss_pred HHHH
Confidence 5543
No 389
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=88.95 E-value=4.4 Score=36.29 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=20.4
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
...+++|||+||.|. ..-...+..+++.-+
T Consensus 101 ~~~KviiI~~ad~l~-~~a~NaLLK~LEepp 130 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT-EEAQNALLKTLEEPP 130 (162)
T ss_dssp SSSEEEEEETGGGS--HHHHHHHHHHHHSTT
T ss_pred CCceEEEeehHhhhh-HHHHHHHHHHhcCCC
Confidence 567899999999985 334555556665544
No 390
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.88 E-value=1.3 Score=47.98 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=14.7
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+|++||.|+|||..+.+
T Consensus 40 A~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999976543
No 391
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=88.81 E-value=2.2 Score=45.87 Aligned_cols=29 Identities=17% Similarity=0.449 Sum_probs=18.5
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHh
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDM 367 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~ 367 (466)
....+++||||||.|- ..-...+..+++.
T Consensus 115 ~~~~KVvIIDEad~Lt-~~A~NALLK~LEE 143 (535)
T PRK08451 115 MARFKIFIIDEVHMLT-KEAFNALLKTLEE 143 (535)
T ss_pred cCCeEEEEEECcccCC-HHHHHHHHHHHhh
Confidence 4567899999999885 3233344444433
No 392
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.70 E-value=0.97 Score=49.37 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=14.8
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+|++||.|+|||.+..+
T Consensus 40 a~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999977644
No 393
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.64 E-value=3 Score=40.16 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=15.2
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
-+.++++-|||||...-
T Consensus 53 ~~~vtGevGsGKTv~~R 69 (269)
T COG3267 53 ILAVTGEVGSGKTVLRR 69 (269)
T ss_pred eEEEEecCCCchhHHHH
Confidence 78999999999998765
No 394
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.58 E-value=0.82 Score=50.11 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.0
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+|++||.|+|||.+..+
T Consensus 40 a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARI 57 (620)
T ss_pred eEEEECCCCCChHHHHHH
Confidence 679999999999976533
No 395
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=88.57 E-value=0.82 Score=42.60 Aligned_cols=14 Identities=43% Similarity=0.463 Sum_probs=13.0
Q ss_pred cEEEecCCCCchhH
Q 012319 214 DIIGAAETGSGKTL 227 (466)
Q Consensus 214 dvl~~a~TGSGKTl 227 (466)
.+++.||-|+|||.
T Consensus 22 ~~~l~G~rg~GKTs 35 (234)
T PF01637_consen 22 HILLYGPRGSGKTS 35 (234)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEEcCCcCCHHH
Confidence 88999999999996
No 396
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.51 E-value=2.8 Score=38.25 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=19.1
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
....++|||||+|.|.. .....++..|.
T Consensus 94 ~~~~kviiide~~~l~~----~~~~~Ll~~le 121 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE----AAANALLKTLE 121 (188)
T ss_pred cCCeEEEEEechhhhCH----HHHHHHHHHhc
Confidence 45678999999999853 23445555554
No 397
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=88.46 E-value=1.6 Score=46.90 Aligned_cols=72 Identities=18% Similarity=0.321 Sum_probs=55.4
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
.+++||.++|+.-|..++..+... .++.+..++|+.+.......+. +..+|||||. .+..| +++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~---~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~rG----iDi 434 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV---TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLGRG----VDL 434 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc---cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhhcc----CCc
Confidence 457999999999988888777643 3788899999998766544443 4689999996 45554 788
Q ss_pred CcccEEEe
Q 012319 339 HTLSFFVL 346 (466)
Q Consensus 339 ~~l~~lVi 346 (466)
..+++||.
T Consensus 435 p~v~~VI~ 442 (518)
T PLN00206 435 LRVRQVII 442 (518)
T ss_pred ccCCEEEE
Confidence 89998885
No 398
>CHL00176 ftsH cell division protein; Validated
Probab=88.46 E-value=1.2 Score=48.95 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||+..
T Consensus 218 gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 218 GVLLVGPPGTGKTLLA 233 (638)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999654
No 399
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=88.45 E-value=1.7 Score=47.39 Aligned_cols=70 Identities=13% Similarity=0.276 Sum_probs=51.5
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++||..|.+++..|... ++.+..++||++.......+. +..+|||||- .+..| +++.
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~-----a~~~G----ID~p 291 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQ----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATN-----AFGMG----IDKP 291 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEec-----hhhcc----CcCC
Confidence 36899999999999999988753 778889999998765544332 5789999995 22222 5566
Q ss_pred cccEEEe
Q 012319 340 TLSFFVL 346 (466)
Q Consensus 340 ~l~~lVi 346 (466)
++++||.
T Consensus 292 ~v~~VI~ 298 (591)
T TIGR01389 292 NVRFVIH 298 (591)
T ss_pred CCCEEEE
Confidence 6776664
No 400
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=88.45 E-value=1.6 Score=48.03 Aligned_cols=92 Identities=20% Similarity=0.356 Sum_probs=62.7
Q ss_pred CeEEEEEeCcHH--------HHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhC
Q 012319 263 HLRALIITPTRE--------LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 263 ~~~vLil~Ptre--------La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~ 330 (466)
+.+++|++|+.+ -|.++++.+...+ .++.+..++|+++.......+. +..+|||||. ++..
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie~ 520 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKKAF--PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIEV 520 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eeec
Confidence 457999999863 3445566665543 3678999999998765544333 4789999995 4444
Q ss_pred CCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
| +++.++.++|+..+++.. ...+.+...+..
T Consensus 521 G----vDiP~v~~VIi~~~~r~g----ls~lhQ~~GRvG 551 (630)
T TIGR00643 521 G----VDVPNATVMVIEDAERFG----LSQLHQLRGRVG 551 (630)
T ss_pred C----cccCCCcEEEEeCCCcCC----HHHHHHHhhhcc
Confidence 4 788999999998888642 334455554443
No 401
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=88.31 E-value=2.9 Score=43.28 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+|+.||.|+|||...
T Consensus 38 a~Lf~Gp~G~GKt~lA 53 (394)
T PRK07940 38 AWLFTGPPGSGRSVAA 53 (394)
T ss_pred EEEEECCCCCcHHHHH
Confidence 5899999999999654
No 402
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.16 E-value=0.81 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.066 Sum_probs=16.9
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
-+.+.+|+|||||... ++++...
T Consensus 57 iteI~G~~GsGKTtLa-L~~~~~~ 79 (321)
T TIGR02012 57 IIEIYGPESSGKTTLA-LHAIAEA 79 (321)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH
Confidence 7889999999999554 4444444
No 403
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.15 E-value=0.5 Score=45.99 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 201 KACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 201 ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.+.+...+..++ +++++|+||||||... -.++..+
T Consensus 117 ~~~l~~~v~~~~-~ili~G~tGSGKTT~l-~all~~i 151 (270)
T PF00437_consen 117 AEFLRSAVRGRG-NILISGPTGSGKTTLL-NALLEEI 151 (270)
T ss_dssp HHHHHHCHHTTE-EEEEEESTTSSHHHHH-HHHHHHC
T ss_pred HHHHhhccccce-EEEEECCCccccchHH-HHHhhhc
Confidence 334444444555 9999999999999655 4444444
No 404
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.14 E-value=3.1 Score=47.52 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=16.6
Q ss_pred cCCccEEEecCCCCchhHHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAFG 230 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~~ 230 (466)
..+.++|+.||+|+|||...-
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHH
Confidence 333499999999999997653
No 405
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=88.04 E-value=0.61 Score=51.41 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=33.7
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 285 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~ 285 (466)
++++.||||||||..|++|-+-.. .-.+||+=|--|+........+.
T Consensus 141 hvlviApTgSGKgvg~VIPnLL~~-------------------------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 141 HSLVVAPTRAGKGVGVVIPTLLTF-------------------------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred eEEEEecCCCCceeeehHhHHhcC-------------------------CCCEEEEeCCchHHHHHHHHHHh
Confidence 899999999999999999975432 01366777777776655554443
No 406
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.02 E-value=2.1 Score=47.56 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.6
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+|++||.|+|||.++.+
T Consensus 42 AYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 368999999999977644
No 407
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.85 E-value=1.8 Score=48.67 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=17.7
Q ss_pred cccEEEecccchhhccCCHHHHHHHHH
Q 012319 340 TLSFFVLDEADRMIENGHFRELQSIID 366 (466)
Q Consensus 340 ~l~~lViDEad~ll~~g~~~~l~~Il~ 366 (466)
..++|+|||+|.+- ...+..+.++++
T Consensus 553 p~~VvllDEieka~-~~~~~~Ll~~ld 578 (731)
T TIGR02639 553 PHCVLLLDEIEKAH-PDIYNILLQVMD 578 (731)
T ss_pred CCeEEEEechhhcC-HHHHHHHHHhhc
Confidence 45799999999874 445555555554
No 408
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=87.83 E-value=1.6 Score=41.57 Aligned_cols=23 Identities=39% Similarity=0.354 Sum_probs=16.5
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
-++++|++|+|||.. ++-++.++
T Consensus 15 l~lI~G~~G~GKT~~-~~~~~~~~ 37 (242)
T cd00984 15 LIIIAARPSMGKTAF-ALNIAENI 37 (242)
T ss_pred EEEEEeCCCCCHHHH-HHHHHHHH
Confidence 778999999999944 44444443
No 409
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.79 E-value=1.8 Score=50.04 Aligned_cols=147 Identities=16% Similarity=0.086 Sum_probs=78.6
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
++++.-..|.|||.+-+.-.+.++-+.... .-............ ..-.|||+|. ++..|.+.++...+... ++
T Consensus 376 ~~~~ade~~~qk~~~~l~~~l~~~~k~~~~----~cS~~~~e~~n~~~-tgaTLII~P~-aIl~QW~~EI~kH~~~~-lK 448 (1394)
T KOG0298|consen 376 RVQCADEMGWQKTSEKLILELSDLPKLCPS----CCSELVKEGENLVE-TGATLIICPN-AILMQWFEEIHKHISSL-LK 448 (1394)
T ss_pred ceeehhhhhccchHHHHHHHHhcccccchh----hhhHHHhcccceee-cCceEEECcH-HHHHHHHHHHHHhcccc-ce
Confidence 677778889999988765555443211100 00000000001111 1236999995 55678888887776533 56
Q ss_pred EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC--CCc---------ccc----CCccc--EEEecccchhhccC
Q 012319 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG--EKH---------LVE----LHTLS--FFVLDEADRMIENG 356 (466)
Q Consensus 294 v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~--~~~---------~~~----l~~l~--~lViDEad~ll~~g 356 (466)
+....|=...........-.+|||++|...|..-|... ... ... |-.+. -|+||||.. +..
T Consensus 449 v~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQM-ves- 526 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQM-VES- 526 (1394)
T ss_pred EEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHh-hcc-
Confidence 65554432211111122246899999999998776543 111 111 12222 278999974 433
Q ss_pred CHHHHHHHHHhCC
Q 012319 357 HFRELQSIIDMLP 369 (466)
Q Consensus 357 ~~~~l~~Il~~l~ 369 (466)
....+...+..|+
T Consensus 527 ssS~~a~M~~rL~ 539 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLH 539 (1394)
T ss_pred hHHHHHHHHHHhh
Confidence 5555566666665
No 410
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=87.62 E-value=9.5 Score=38.07 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=16.5
Q ss_pred EEecCCCCchhHHHHHHHHHHHH
Q 012319 216 IGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 216 l~~a~TGSGKTl~~~lpil~~l~ 238 (466)
++.++-|+|||.+.++.++.+++
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~ 23 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWAL 23 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHh
Confidence 46788999999998887777765
No 411
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.59 E-value=4.8 Score=44.98 Aligned_cols=28 Identities=18% Similarity=0.371 Sum_probs=25.3
Q ss_pred cEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 342 SFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 342 ~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
-+||||.-|.+-+.-....+..++++.|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P 158 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAP 158 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCC
Confidence 5999999999988777888999999998
No 412
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=87.56 E-value=3.7 Score=38.73 Aligned_cols=22 Identities=23% Similarity=0.150 Sum_probs=16.2
Q ss_pred cEEEecCCCCchhHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQ 235 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~ 235 (466)
.+++.+++|+|||...+..+.+
T Consensus 22 ~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 22 FVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 8899999999999654433333
No 413
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=87.55 E-value=2.3 Score=44.55 Aligned_cols=26 Identities=42% Similarity=0.437 Sum_probs=17.9
Q ss_pred cCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.+. -+++.|++|+||| +|++-++.++
T Consensus 194 ~G~-l~vi~g~pg~GKT-~~~l~~a~~~ 219 (434)
T TIGR00665 194 PSD-LIILAARPSMGKT-AFALNIAENA 219 (434)
T ss_pred CCe-EEEEEeCCCCChH-HHHHHHHHHH
Confidence 343 6788999999999 4445554444
No 414
>PF14516 AAA_35: AAA-like domain
Probab=87.51 E-value=16 Score=36.82 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 197 TPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 197 t~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.|+.+.++..+...|. .+.+.||-.+|||.. +.-+++++
T Consensus 17 ~~~e~~~~~~i~~~G~-~~~I~apRq~GKTSl-l~~l~~~l 55 (331)
T PF14516_consen 17 PPAEQECYQEIVQPGS-YIRIKAPRQMGKTSL-LLRLLERL 55 (331)
T ss_pred hHHHHHHHHHHhcCCC-EEEEECcccCCHHHH-HHHHHHHH
Confidence 3588999988866465 889999999999954 34455555
No 415
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=87.44 E-value=1.1 Score=47.76 Aligned_cols=47 Identities=26% Similarity=0.330 Sum_probs=31.0
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 187 SIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 187 ~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.|..+|| ++-|.+.|..++.....-++++||||||||... ..+++.+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3455665 566777776666544326899999999999764 2244444
No 416
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=87.42 E-value=3.4 Score=42.09 Aligned_cols=71 Identities=20% Similarity=0.355 Sum_probs=51.8
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCccc
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 342 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~ 342 (466)
+.++||+++|+.-|..++..|+.. +.++.+..++|..+.....+.. ..+|+|||. ++..| +++..+
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~R~~~~--~~~iLVaTd-----v~~rG----iDi~~~- 337 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKDRERAM--QFDILLGTS-----TVDVG----VDFKRD- 337 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhh--CCCceEEeeecCCCHHHHHHhc--cCCEEEEec-----HHhcc----cCCCCc-
Confidence 447999999999999999999874 2356777888888876654433 679999997 34444 556555
Q ss_pred EEEec
Q 012319 343 FFVLD 347 (466)
Q Consensus 343 ~lViD 347 (466)
++|++
T Consensus 338 ~vi~~ 342 (357)
T TIGR03158 338 WLIFS 342 (357)
T ss_pred eEEEC
Confidence 56664
No 417
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=87.33 E-value=4.4 Score=41.03 Aligned_cols=41 Identities=17% Similarity=0.028 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHHhcCC---ccEEEecCCCCchhHHHHHHHHHHH
Q 012319 196 PTPIQKACIPAAAHQGK---VDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 196 pt~iQ~~~i~~~l~~~~---~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.+|||...+..+....+ +-+++.||.|.||+... ..+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~L 45 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGL 45 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHH
Confidence 35778777777654211 25789999999999655 3344444
No 418
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=87.25 E-value=1.1 Score=52.74 Aligned_cols=61 Identities=25% Similarity=0.433 Sum_probs=44.7
Q ss_pred HHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 012319 207 AAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 286 (466)
Q Consensus 207 ~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l 286 (466)
+...+. +++|.|..|||||++...-++..++... +....++|||+.|+..+..+..++..-
T Consensus 12 ~~~~~~-~~lveASAGSGKT~vL~~r~lrlLl~~~------------------~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 12 ASPPGQ-SVLVEASAGTGKTFVLAERVLRLLLEGG------------------PLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred hcCCCC-cEEEEEcCCCCchhHHHHHHHHHHhhcC------------------CCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 334444 9999999999999998887887776421 223347999999998777776655543
No 419
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=87.17 E-value=3 Score=45.25 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=14.9
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+|++||.|+|||.+..+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999977644
No 420
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.16 E-value=1.2 Score=49.85 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|||||+..
T Consensus 489 giLL~GppGtGKT~la 504 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLA 504 (733)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999654
No 421
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=86.98 E-value=1.9 Score=42.14 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=26.6
Q ss_pred eCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHH
Q 012319 319 GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIID 366 (466)
Q Consensus 319 ~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~ 366 (466)
--|+-|..+|. .|..=++|.|||.|+|. ..-.+.+...++
T Consensus 89 eK~gDlaaiLt-------~Le~~DVLFIDEIHrl~-~~vEE~LYpaME 128 (332)
T COG2255 89 EKPGDLAAILT-------NLEEGDVLFIDEIHRLS-PAVEEVLYPAME 128 (332)
T ss_pred cChhhHHHHHh-------cCCcCCeEEEehhhhcC-hhHHHHhhhhhh
Confidence 35677777774 35566789999999985 444444444443
No 422
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.98 E-value=4.5 Score=45.43 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=16.3
Q ss_pred cCCccEEEecCCCCchhHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+.++|+.||+|+|||...
T Consensus 201 ~~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 201 RKKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCCCceEEECCCCCCHHHHH
Confidence 33459999999999999765
No 423
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=86.89 E-value=5.6 Score=35.96 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=11.9
Q ss_pred EEEecCCCCchhHH
Q 012319 215 IIGAAETGSGKTLA 228 (466)
Q Consensus 215 vl~~a~TGSGKTl~ 228 (466)
+++.+++|||||.-
T Consensus 2 ~li~G~~~sGKS~~ 15 (169)
T cd00544 2 ILVTGGARSGKSRF 15 (169)
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999944
No 424
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=86.84 E-value=2.5 Score=40.78 Aligned_cols=124 Identities=23% Similarity=0.235 Sum_probs=62.4
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc---HHHHHHHHHHHHHHHcCC
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT---RELALQVTDHLKEVAKGI 290 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt---reLa~Qv~~~l~~l~~~~ 290 (466)
-+++.|+||.|||... +-+..++... .+..|+|++.- .+++..+...+ .++
T Consensus 21 L~vi~a~pg~GKT~~~-l~ia~~~a~~---------------------~~~~vly~SlEm~~~~l~~R~la~~----s~v 74 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFA-LQIALNAALN---------------------GGYPVLYFSLEMSEEELAARLLARL----SGV 74 (259)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHHHHT---------------------TSSEEEEEESSS-HHHHHHHHHHHH----HTS
T ss_pred EEEEEecccCCchHHH-HHHHHHHHHh---------------------cCCeEEEEcCCCCHHHHHHHHHHHh----hcc
Confidence 6788899999999544 4444444321 13568888753 34444433322 222
Q ss_pred CcEEEEEE-CCCCHHHHH------HHHhcCCcEEEeCcH----HHHHHHhCCCCccccCCcccEEEecccchhhcc----
Q 012319 291 NVRVVPIV-GGMSTEKQE------RLLKARPELVVGTPG----RLWELMSGGEKHLVELHTLSFFVLDEADRMIEN---- 355 (466)
Q Consensus 291 ~~~v~~~~-gg~~~~~~~------~~l~~~~dIiV~TP~----~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~---- 355 (466)
.+. .+. |........ ..+....-++..+|. .|...+.. .......+.+||||=.+.|-..
T Consensus 75 ~~~--~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~---~~~~~~~~~~v~IDyl~ll~~~~~~~ 149 (259)
T PF03796_consen 75 PYN--KIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRR---LKREGKKVDVVFIDYLQLLKSEDSSD 149 (259)
T ss_dssp THH--HHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHH---HHHHSTTEEEEEEEEGGGSBTSCSSS
T ss_pred hhh--hhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHH---HHhhccCCCEEEechHHHhcCCCCCC
Confidence 211 111 222222211 122233323344443 44444421 1122377899999999987542
Q ss_pred CCHHHHHHHHHhC
Q 012319 356 GHFRELQSIIDML 368 (466)
Q Consensus 356 g~~~~l~~Il~~l 368 (466)
+.+..+..|...|
T Consensus 150 ~~~~~~~~i~~~L 162 (259)
T PF03796_consen 150 NRRQEIGEISREL 162 (259)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3456666665444
No 425
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=86.77 E-value=2.2 Score=46.81 Aligned_cols=69 Identities=14% Similarity=0.270 Sum_probs=50.8
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++||.-|.+++..|... ++.+..++|+++.......+ ....+|||||.. +..| +++.
T Consensus 237 ~~~IIFc~tr~~~e~la~~L~~~----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a-----~~~G----IDip 303 (607)
T PRK11057 237 KSGIIYCNSRAKVEDTAARLQSR----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA-----FGMG----INKP 303 (607)
T ss_pred CCEEEEECcHHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech-----hhcc----CCCC
Confidence 46899999999999999888764 78899999999876554333 346799999962 2222 5566
Q ss_pred cccEEE
Q 012319 340 TLSFFV 345 (466)
Q Consensus 340 ~l~~lV 345 (466)
.+++||
T Consensus 304 ~V~~VI 309 (607)
T PRK11057 304 NVRFVV 309 (607)
T ss_pred CcCEEE
Confidence 666665
No 426
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=86.73 E-value=2.3 Score=48.48 Aligned_cols=27 Identities=19% Similarity=0.296 Sum_probs=18.4
Q ss_pred cccEEEecccchhhccCCHHHHHHHHHh
Q 012319 340 TLSFFVLDEADRMIENGHFRELQSIIDM 367 (466)
Q Consensus 340 ~l~~lViDEad~ll~~g~~~~l~~Il~~ 367 (466)
..++|+|||++.+- ...+..+..+++.
T Consensus 668 p~svvllDEieka~-~~v~~~Llq~ld~ 694 (852)
T TIGR03345 668 PYSVVLLDEVEKAH-PDVLELFYQVFDK 694 (852)
T ss_pred CCcEEEEechhhcC-HHHHHHHHHHhhc
Confidence 45789999999763 4455556666543
No 427
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=86.73 E-value=0.33 Score=43.97 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=28.6
Q ss_pred HHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhc
Q 012319 307 ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 354 (466)
Q Consensus 307 ~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~ 354 (466)
.+.....+||||++..-|++-........+.+ .-.+|||||||.|.+
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~-~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDL-KDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--C-CCEEEEETTGGGCGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccc-cCcEEEEecccchHH
Confidence 34455679999999888865432211001222 336899999999875
No 428
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=86.61 E-value=1.9 Score=47.56 Aligned_cols=109 Identities=25% Similarity=0.245 Sum_probs=62.2
Q ss_pred EEecCCCCchhHHHHHHHHH-HHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEE
Q 012319 216 IGAAETGSGKTLAFGLPIMQ-RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 294 (466)
Q Consensus 216 l~~a~TGSGKTl~~~lpil~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v 294 (466)
|+.---|-|||..-+.-++. ...... ..........||++|+ .+..|....+.+......+.+
T Consensus 156 Iladd~glgkt~~ti~l~l~~~~~~~~---------------~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v 219 (674)
T KOG1001|consen 156 ILADDMGLGKTVKTIALILKQKLKSKE---------------EDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSI 219 (674)
T ss_pred eEeeccccchHHHHHHHHHhcccCCcc---------------hhhccccCceeEecch-HHHHHHHHHHhccCCccceEE
Confidence 56667799999875433332 221110 0011123346777776 455677777755555445666
Q ss_pred EEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcc--cEEEecccchhh
Q 012319 295 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL--SFFVLDEADRMI 353 (466)
Q Consensus 295 ~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l--~~lViDEad~ll 353 (466)
.+.+|... .......++||++|++.|.. ..+..+ -.+|+||||.+-
T Consensus 220 ~v~~gr~k----d~~el~~~dVVltTy~il~~---------~~l~~i~w~Riildea~~ik 267 (674)
T KOG1001|consen 220 YVYHGRTK----DKSELNSYDVVLTTYDILKN---------SPLVKIKWLRIVLDEAHTIK 267 (674)
T ss_pred EEeccccc----ccchhcCCceEEeeHHHhhc---------ccccceeEEEEEeccccccC
Confidence 66666111 11233568899999998853 112223 257999999874
No 429
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=86.56 E-value=6.6 Score=44.59 Aligned_cols=71 Identities=21% Similarity=0.400 Sum_probs=54.6
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhc----CCcEEEeCcHHHHHHHhCCCCccccCCc
Q 012319 265 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA----RPELVVGTPGRLWELMSGGEKHLVELHT 340 (466)
Q Consensus 265 ~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 340 (466)
.+||.+|++.-+..++..|..... .++.+..+||+.+...+...+.. ...|||||. +...+ +++..
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~-~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----IAErg----ItIp~ 280 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLD-SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----IAETS----LTIEG 280 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----hHhhc----ccccC
Confidence 699999999999999888876432 36889999999999888777753 358999996 33333 66777
Q ss_pred ccEEE
Q 012319 341 LSFFV 345 (466)
Q Consensus 341 l~~lV 345 (466)
|.+||
T Consensus 281 V~~VI 285 (819)
T TIGR01970 281 IRVVI 285 (819)
T ss_pred ceEEE
Confidence 77554
No 430
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=86.36 E-value=3.4 Score=43.77 Aligned_cols=110 Identities=23% Similarity=0.423 Sum_probs=78.4
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
-|+||.+=|+-+|.++.+.|..+ |+++..++++...-+....++ +..|||||- ++|..| +++.
T Consensus 447 eRvLVTtLTKkmAEdLT~Yl~e~----gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLREG----LDiP 513 (663)
T COG0556 447 ERVLVTTLTKKMAEDLTEYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG----LDLP 513 (663)
T ss_pred CeEEEEeehHHHHHHHHHHHHhc----CceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhhcc----CCCc
Confidence 58999999999888777777665 899999999988765544443 468999994 566555 8899
Q ss_pred cccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 340 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 340 ~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
.+++|.|=.||. .||...-..++..+.+..++. .-++|+..-.++.+
T Consensus 514 EVsLVAIlDADK---eGFLRse~SLIQtIGRAARN~-------------------~GkvIlYAD~iT~s 560 (663)
T COG0556 514 EVSLVAILDADK---EGFLRSERSLIQTIGRAARNV-------------------NGKVILYADKITDS 560 (663)
T ss_pred ceeEEEEeecCc---cccccccchHHHHHHHHhhcc-------------------CCeEEEEchhhhHH
Confidence 999998888994 667655555554444332222 34678887777644
No 431
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=86.32 E-value=12 Score=33.45 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=22.8
Q ss_pred CCcccEEEecccchhhccCC--HHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGH--FRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~--~~~l~~Il~~l~ 369 (466)
...+++|||||+-..+..|+ .+.+..+++.-|
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp 126 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP 126 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC
Confidence 45789999999998877776 445555555443
No 432
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.31 E-value=2.1 Score=43.38 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=17.3
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.++++||||||||... -.++..+
T Consensus 124 ~ili~G~tGSGKTT~l-~al~~~i 146 (343)
T TIGR01420 124 LILVTGPTGSGKSTTL-ASMIDYI 146 (343)
T ss_pred EEEEECCCCCCHHHHH-HHHHHhh
Confidence 8999999999999664 3344444
No 433
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=86.27 E-value=0.85 Score=50.12 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=35.1
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 286 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l 286 (466)
++++.||||||||..+++|-+-.. +.-+||+=|-.|++..+....+++
T Consensus 226 H~Lv~ApTgsGKt~g~VIPnLL~~-------------------------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 226 HGLVFAGSGGFKTTSVVVPTALKW-------------------------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred eEEEEeCCCCCccceEehhhhhcC-------------------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 899999999999999999965321 113677778888877666655443
No 434
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.17 E-value=1.9 Score=48.78 Aligned_cols=16 Identities=25% Similarity=0.067 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++++|+|+|||...
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999654
No 435
>PRK06321 replicative DNA helicase; Provisional
Probab=86.16 E-value=4 Score=43.27 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=16.8
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
-+|+.|++|.||| +|++-+..++
T Consensus 228 LiiiaarPgmGKT-afal~ia~~~ 250 (472)
T PRK06321 228 LMILAARPAMGKT-ALALNIAENF 250 (472)
T ss_pred EEEEEeCCCCChH-HHHHHHHHHH
Confidence 5677899999999 4455555554
No 436
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=86.02 E-value=9.4 Score=42.29 Aligned_cols=76 Identities=25% Similarity=0.425 Sum_probs=57.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||+++|+.-|..+...|... ++.+..++|+.........+ .+..+|+|||- .+..| +++
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~~----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~-----~L~rG----fdl 512 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLREG----LDI 512 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhc----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC-----HHhCC----ccc
Confidence 568999999999999888888764 78888899988764433322 24678999983 45554 778
Q ss_pred CcccEEEecccch
Q 012319 339 HTLSFFVLDEADR 351 (466)
Q Consensus 339 ~~l~~lViDEad~ 351 (466)
..++++|+=+++.
T Consensus 513 p~v~lVii~d~ei 525 (652)
T PRK05298 513 PEVSLVAILDADK 525 (652)
T ss_pred cCCcEEEEeCCcc
Confidence 9999998877774
No 437
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.95 E-value=3.2 Score=45.46 Aligned_cols=28 Identities=11% Similarity=0.306 Sum_probs=19.4
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+..-+++||||||.|-. .....+++.|-
T Consensus 125 ~~~~KVvIIdEad~Lt~----~a~naLLK~LE 152 (620)
T PRK14954 125 KGRYRVYIIDEVHMLST----AAFNAFLKTLE 152 (620)
T ss_pred cCCCEEEEEeChhhcCH----HHHHHHHHHHh
Confidence 46678999999998853 23455666654
No 438
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=85.89 E-value=0.62 Score=51.06 Aligned_cols=116 Identities=19% Similarity=0.260 Sum_probs=69.3
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEE----CCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC-CCccc
Q 012319 262 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIV----GGMSTEKQERLLKARPELVVGTPGRLWELMSGG-EKHLV 336 (466)
Q Consensus 262 ~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~----gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~-~~~~~ 336 (466)
++.++|.+.=+-.|-...-+.|..+.. .++.|..+. +..+.+.. ... +--||+||...|+---... ..+..
T Consensus 317 GRKrAlW~SVSsDLKfDAERDL~DigA-~~I~V~alnK~KYakIss~en-~n~--krGViFaTYtaLIGEs~~~~~kyrt 392 (1300)
T KOG1513|consen 317 GRKRALWFSVSSDLKFDAERDLRDIGA-TGIAVHALNKFKYAKISSKEN-TNT--KRGVIFATYTALIGESQGKGGKYRT 392 (1300)
T ss_pred ccceeEEEEeccccccchhhchhhcCC-CCccceehhhccccccccccc-CCc--cceeEEEeeHhhhhhccccCchHHH
Confidence 356899999999998888888888754 355554432 11111111 111 1259999998886543321 11111
Q ss_pred cCCcc---------cEEEecccchhhc---c------CCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceE
Q 012319 337 ELHTL---------SFFVLDEADRMIE---N------GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 398 (466)
Q Consensus 337 ~l~~l---------~~lViDEad~ll~---~------g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ 398 (466)
.|++| .+||+||||+--. + -....+..+-+.|| +.++
T Consensus 393 R~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-------------------------~ARV 447 (1300)
T KOG1513|consen 393 RFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-------------------------NARV 447 (1300)
T ss_pred HHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-------------------------CceE
Confidence 12221 5899999997432 1 13456666666775 5688
Q ss_pred EEEeeecC
Q 012319 399 LVFSATIA 406 (466)
Q Consensus 399 ll~SATl~ 406 (466)
+--|||=+
T Consensus 448 VYASATGA 455 (1300)
T KOG1513|consen 448 VYASATGA 455 (1300)
T ss_pred EEeeccCC
Confidence 88999965
No 439
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.78 E-value=0.75 Score=45.07 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCccEEEecCCCCchhHH
Q 012319 202 ACIPAAAHQGKVDIIGAAETGSGKTLA 228 (466)
Q Consensus 202 ~~i~~~l~~~~~dvl~~a~TGSGKTl~ 228 (466)
..+..++..++ .++++||+|+|||..
T Consensus 24 ~ll~~l~~~~~-pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 24 YLLDLLLSNGR-PVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHHHHHHHCTE-EEEEESSTTSSHHHH
T ss_pred HHHHHHHHcCC-cEEEECCCCCchhHH
Confidence 34555556666 999999999999964
No 440
>PRK08006 replicative DNA helicase; Provisional
Probab=85.77 E-value=5.5 Score=42.24 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=18.2
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
..+. -+|+.|++|.||| +|++-+..++
T Consensus 222 ~~G~-LiiIaarPgmGKT-afalnia~~~ 248 (471)
T PRK08006 222 QPSD-LIIVAARPSMGKT-TFAMNLCENA 248 (471)
T ss_pred CCCc-EEEEEeCCCCCHH-HHHHHHHHHH
Confidence 3453 5677899999999 4545554444
No 441
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=85.69 E-value=4.3 Score=36.76 Aligned_cols=16 Identities=25% Similarity=0.129 Sum_probs=13.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.+++|||||...
T Consensus 3 ~ili~G~~~sGKS~~a 18 (170)
T PRK05800 3 LILVTGGARSGKSRFA 18 (170)
T ss_pred EEEEECCCCccHHHHH
Confidence 5899999999999543
No 442
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.62 E-value=0.65 Score=46.02 Aligned_cols=16 Identities=50% Similarity=0.582 Sum_probs=14.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
|+++.+|||||||+.+
T Consensus 99 NILLiGPTGsGKTlLA 114 (408)
T COG1219 99 NILLIGPTGSGKTLLA 114 (408)
T ss_pred cEEEECCCCCcHHHHH
Confidence 9999999999999765
No 443
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.57 E-value=3.4 Score=45.38 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+++|||.|-|||..+
T Consensus 328 ilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLA 343 (877)
T ss_pred eEEeecCCCCChhHHH
Confidence 6899999999999544
No 444
>PRK05748 replicative DNA helicase; Provisional
Probab=85.56 E-value=3 Score=43.90 Aligned_cols=27 Identities=44% Similarity=0.503 Sum_probs=18.4
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
..+. -+++.|++|.||| +|++.++.++
T Consensus 201 ~~G~-livIaarpg~GKT-~~al~ia~~~ 227 (448)
T PRK05748 201 QPND-LIIVAARPSVGKT-AFALNIAQNV 227 (448)
T ss_pred CCCc-eEEEEeCCCCCch-HHHHHHHHHH
Confidence 3343 6788999999999 4445555444
No 445
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=85.50 E-value=6.4 Score=32.75 Aligned_cols=75 Identities=20% Similarity=0.376 Sum_probs=52.7
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH---h-cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---K-ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l---~-~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.++++..+.++...|.. .+..+..++|+.+.......+ . ....|+|+|.- +..| +++
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~-----~~~G----~d~ 94 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV-----IARG----IDL 94 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh-----hhcC----cCh
Confidence 34799999999999999988876 366788899998754433332 2 34579999852 2222 566
Q ss_pred CcccEEEecccc
Q 012319 339 HTLSFFVLDEAD 350 (466)
Q Consensus 339 ~~l~~lViDEad 350 (466)
..+.++|+...+
T Consensus 95 ~~~~~vi~~~~~ 106 (131)
T cd00079 95 PNVSVVINYDLP 106 (131)
T ss_pred hhCCEEEEeCCC
Confidence 777888776664
No 446
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=85.45 E-value=2 Score=50.60 Aligned_cols=74 Identities=15% Similarity=0.328 Sum_probs=52.5
Q ss_pred eEEEEEeCcH---HHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCc
Q 012319 264 LRALIITPTR---ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 340 (466)
Q Consensus 264 ~~vLil~Ptr---eLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 340 (466)
.++||.++|+ +.|..++..|... ++.+..++|+...........+..+|||||... .+.+.+| +++..
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~----g~~a~~lhg~~~~~~l~~Fr~G~~~vLVata~~-tdv~aRG----IDip~ 397 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENH----GVKAVAYHATKPKEDYEKFAEGEIDVLIGVASY-YGTLVRG----LDLPE 397 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhC----CceEEEEeCCCCHHHHHHHHcCCCCEEEEeccc-cCccccc----CCCCc
Confidence 4689999999 8888888887664 789999999987554444455678999998310 1223333 56666
Q ss_pred -ccEEEe
Q 012319 341 -LSFFVL 346 (466)
Q Consensus 341 -l~~lVi 346 (466)
|+++|.
T Consensus 398 ~V~~vI~ 404 (1171)
T TIGR01054 398 RVRYAVF 404 (1171)
T ss_pred cccEEEE
Confidence 677776
No 447
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=85.39 E-value=0.84 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.7
Q ss_pred ccEEEecCCCCchhHHHHHHHHH
Q 012319 213 VDIIGAAETGSGKTLAFGLPIMQ 235 (466)
Q Consensus 213 ~dvl~~a~TGSGKTl~~~lpil~ 235 (466)
.++++.||||||||..+++|.|-
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL 198 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLL 198 (636)
T ss_pred ceEEEEecCCCCCceEEEccchh
Confidence 38999999999999999999764
No 448
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=85.37 E-value=2.6 Score=39.69 Aligned_cols=49 Identities=24% Similarity=0.161 Sum_probs=29.5
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 286 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l 286 (466)
-+++.+++|+|||...+--+.+.+ .. +-+++|+.-. +-..++.+.+..+
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~-~~----------------------g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGL-KN----------------------GEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-hC----------------------CCeEEEEECC-CCHHHHHHHHHHc
Confidence 788899999999864333333333 11 2357776543 3456666666554
No 449
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.30 E-value=4.9 Score=45.12 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||...
T Consensus 214 giLL~GppGtGKT~la 229 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLA 229 (733)
T ss_pred eEEEECCCCCChHHHH
Confidence 7999999999999553
No 450
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.26 E-value=1.9 Score=49.04 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||||+|||...
T Consensus 541 ~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 541 SFLFSGPTGVGKTELT 556 (821)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4789999999999654
No 451
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=85.23 E-value=10 Score=38.75 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=20.3
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
....+|++||.|.- |.+..--+..++..|-
T Consensus 126 ~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~ 155 (362)
T PF03969_consen 126 KESRLLCFDEFQVT-DIADAMILKRLFEALF 155 (362)
T ss_pred hcCCEEEEeeeecc-chhHHHHHHHHHHHHH
Confidence 45678999999843 5555555666776664
No 452
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=85.13 E-value=5.4 Score=41.57 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=17.7
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQR 236 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~ 236 (466)
..+. -+++.|++|+|||.. ++-+..+
T Consensus 192 ~~g~-liviag~pg~GKT~~-al~ia~~ 217 (421)
T TIGR03600 192 VKGD-LIVIGARPSMGKTTL-ALNIAEN 217 (421)
T ss_pred CCCc-eEEEEeCCCCCHHHH-HHHHHHH
Confidence 3454 678899999999944 4444433
No 453
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=85.12 E-value=3.5 Score=45.84 Aligned_cols=92 Identities=20% Similarity=0.359 Sum_probs=61.7
Q ss_pred CeEEEEEeCcHH--------HHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhC
Q 012319 263 HLRALIITPTRE--------LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 263 ~~~vLil~Ptre--------La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~ 330 (466)
+-+++|++|+.+ -+..+++.+..... ++.+..++|+++.......+. +..+|||||. .+..
T Consensus 471 g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~--~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie~ 543 (681)
T PRK10917 471 GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP--ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VIEV 543 (681)
T ss_pred CCcEEEEEcccccccchhHHHHHHHHHHHHHHCC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ceee
Confidence 447999999653 34455666655432 478999999998766544432 4679999995 4444
Q ss_pred CCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
| +++..+.++|+..+++.. ...+.+.+.+..
T Consensus 544 G----iDip~v~~VIi~~~~r~g----ls~lhQ~~GRvG 574 (681)
T PRK10917 544 G----VDVPNATVMVIENAERFG----LAQLHQLRGRVG 574 (681)
T ss_pred C----cccCCCcEEEEeCCCCCC----HHHHHHHhhccc
Confidence 4 788999999999888642 234444444443
No 454
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.11 E-value=2.9 Score=45.80 Aligned_cols=28 Identities=11% Similarity=0.404 Sum_probs=18.6
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+...+++||||||.|.. .....+++.|-
T Consensus 119 ~~~~KVvIIdea~~Ls~----~a~naLLK~LE 146 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ----AAFNAFLKTLE 146 (614)
T ss_pred cCCcEEEEEECcccCCH----HHHHHHHHHHh
Confidence 56778999999998852 23344444443
No 455
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=85.10 E-value=3 Score=44.48 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+|+.+|+|||||+..
T Consensus 90 giLL~GppGtGKT~la 105 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLA 105 (495)
T ss_pred cEEEECCCCCCHHHHH
Confidence 7999999999999654
No 456
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=84.94 E-value=3.4 Score=46.37 Aligned_cols=16 Identities=38% Similarity=0.356 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||||+|||...
T Consensus 490 ~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999765
No 457
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=84.88 E-value=2.8 Score=41.32 Aligned_cols=28 Identities=32% Similarity=0.661 Sum_probs=21.2
Q ss_pred ccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 341 LSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 341 l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
=.++|+||+|.|- .|..+.|.-.+++-+
T Consensus 179 rslFIFDE~DKmp-~gLld~lkpfLdyyp 206 (344)
T KOG2170|consen 179 RSLFIFDEVDKLP-PGLLDVLKPFLDYYP 206 (344)
T ss_pred CceEEechhhhcC-HhHHHHHhhhhcccc
Confidence 3689999999985 777777777776644
No 458
>PRK13767 ATP-dependent helicase; Provisional
Probab=84.87 E-value=6 Score=45.40 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=53.4
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcC--CCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 265 RALIITPTRELALQVTDHLKEVAKG--INVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 265 ~vLil~PtreLa~Qv~~~l~~l~~~--~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
++||.|+||..|..++..|...+.. .+..+...+|+.+........ .+...|||||.- +..| +++
T Consensus 286 ~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-----Le~G----IDi 356 (876)
T PRK13767 286 TTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-----LELG----IDI 356 (876)
T ss_pred CEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----HHhc----CCC
Confidence 6999999999999999998875432 245788899999876554332 245789999963 2333 667
Q ss_pred CcccEEEec
Q 012319 339 HTLSFFVLD 347 (466)
Q Consensus 339 ~~l~~lViD 347 (466)
..+++||.-
T Consensus 357 p~Vd~VI~~ 365 (876)
T PRK13767 357 GYIDLVVLL 365 (876)
T ss_pred CCCcEEEEe
Confidence 778877753
No 459
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.78 E-value=4.2 Score=44.69 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=14.5
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
-+++.||+|+|||.++-
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999998653
No 460
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=84.69 E-value=6.6 Score=39.39 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
-+++++|+|+|||....
T Consensus 116 vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 116 VILVVGVNGVGKTTTIG 132 (318)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 67889999999997653
No 461
>PRK13764 ATPase; Provisional
Probab=84.67 E-value=1.3 Score=48.21 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=19.8
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
..++ +++++++||||||... -.++.++
T Consensus 255 ~~~~-~ILIsG~TGSGKTTll-~AL~~~i 281 (602)
T PRK13764 255 ERAE-GILIAGAPGAGKSTFA-QALAEFY 281 (602)
T ss_pred hcCC-EEEEECCCCCCHHHHH-HHHHHHH
Confidence 4444 8999999999999643 4455555
No 462
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=84.60 E-value=1.5 Score=41.98 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=17.4
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.+++.|++||||| .+++-++..+
T Consensus 15 r~viIG~sGSGKT-~li~~lL~~~ 37 (241)
T PF04665_consen 15 RMVIIGKSGSGKT-TLIKSLLYYL 37 (241)
T ss_pred eEEEECCCCCCHH-HHHHHHHHhh
Confidence 8899999999999 4445555443
No 463
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=84.60 E-value=5.7 Score=37.84 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=21.1
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLA 228 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~ 228 (466)
.++.++.++..|+++.+|.|+|||.+
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTl 153 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTL 153 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHH
Confidence 56677677766799999999999964
No 464
>PRK08760 replicative DNA helicase; Provisional
Probab=84.42 E-value=3.6 Score=43.74 Aligned_cols=27 Identities=37% Similarity=0.347 Sum_probs=18.2
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
..+. -+++.|++|.|||. |++-+..++
T Consensus 227 ~~G~-LivIaarPg~GKTa-fal~iA~~~ 253 (476)
T PRK08760 227 QPTD-LIILAARPAMGKTT-FALNIAEYA 253 (476)
T ss_pred CCCc-eEEEEeCCCCChhH-HHHHHHHHH
Confidence 3443 67889999999994 445454444
No 465
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.41 E-value=4.9 Score=43.35 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=29.0
Q ss_pred ccCccccCCCCHHHHHHHHH---CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 171 EFDAWNELRLHPLLMKSIYR---LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~---~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
+-.+|.+.|--..+...|.- .-+.+|.-++.-.|. -.. -||.|+|.|+|||+.+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~----~Ps-GvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID----APS-GVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC----CCC-ceEEeCCCCccHHHHH
Confidence 34677777754444333322 122333333322221 122 6899999999999654
No 466
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.28 E-value=6.2 Score=45.17 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=21.3
Q ss_pred cEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 342 SFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 342 ~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
-+||||++|.+-+......+..++..++
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~ 150 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQP 150 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCC
Confidence 4799999998854444567778887776
No 467
>PRK09354 recA recombinase A; Provisional
Probab=84.19 E-value=2 Score=43.60 Aligned_cols=21 Identities=24% Similarity=-0.042 Sum_probs=15.8
Q ss_pred cEEEecCCCCchhHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIM 234 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil 234 (466)
-+.+.+|+|||||...+..+.
T Consensus 62 IteI~G~~GsGKTtLal~~~~ 82 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIA 82 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 778999999999965543333
No 468
>PRK13695 putative NTPase; Provisional
Probab=84.16 E-value=6.8 Score=35.23 Aligned_cols=17 Identities=29% Similarity=0.145 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
.+++.++.|+|||....
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999997654
No 469
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.13 E-value=2.9 Score=45.75 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=28.0
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+++-.+||+|||-.-||......|+..++.+.
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~ 651 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLM 651 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhh
Confidence 56678999999999999988889999988776
No 470
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=84.07 E-value=11 Score=42.82 Aligned_cols=71 Identities=18% Similarity=0.345 Sum_probs=55.1
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhc----CCcEEEeCcHHHHHHHhCCCCccccCCc
Q 012319 265 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA----RPELVVGTPGRLWELMSGGEKHLVELHT 340 (466)
Q Consensus 265 ~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 340 (466)
.+||.+|++.-+.++++.|..... .++.+..++|+.+...+...+.. ...|||||. +...+ +++..
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~-~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn-----IAErs----LtIp~ 283 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVA-SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN-----IAETS----LTIEG 283 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhcc-CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc-----hHHhc----ccccC
Confidence 699999999999999999986321 36889999999999888777653 368999996 33333 67788
Q ss_pred ccEEE
Q 012319 341 LSFFV 345 (466)
Q Consensus 341 l~~lV 345 (466)
|.+||
T Consensus 284 V~~VI 288 (812)
T PRK11664 284 IRLVV 288 (812)
T ss_pred ceEEE
Confidence 88665
No 471
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=83.93 E-value=3.6 Score=43.38 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=14.8
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+|++||.|+|||.+..+
T Consensus 41 a~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARI 58 (451)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 578999999999976533
No 472
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=83.88 E-value=1 Score=41.80 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=17.0
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
-+++++|||||||... ..++..+
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 6899999999999764 3344444
No 473
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=83.69 E-value=3 Score=46.16 Aligned_cols=71 Identities=23% Similarity=0.240 Sum_probs=51.9
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.+++-|.+++... .+ .++|.|.-|||||.+..--+...+.. .+...-.+|.|+=|+-
T Consensus 2 ~Ln~~Q~~av~~~--~g--p~lV~AGaGsGKT~vlt~Ria~li~~-------------------~~v~p~~Il~vTFTnk 58 (655)
T COG0210 2 KLNPEQREAVLHP--DG--PLLVLAGAGSGKTRVLTERIAYLIAA-------------------GGVDPEQILAITFTNK 58 (655)
T ss_pred CCCHHHHHHHhcC--CC--CeEEEECCCCCchhhHHHHHHHHHHc-------------------CCcChHHeeeeechHH
Confidence 5789999988665 44 78888999999998765544444421 1122235899999999
Q ss_pred HHHHHHHHHHHHHc
Q 012319 275 LALQVTDHLKEVAK 288 (466)
Q Consensus 275 La~Qv~~~l~~l~~ 288 (466)
.|.++...+..+..
T Consensus 59 AA~em~~Rl~~~~~ 72 (655)
T COG0210 59 AAAEMRERLLKLLG 72 (655)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999998888865
No 474
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=83.68 E-value=1.7 Score=43.58 Aligned_cols=23 Identities=26% Similarity=0.107 Sum_probs=16.8
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
-+.+.+|.|||||.. +++++...
T Consensus 57 iteI~Gp~GsGKTtL-al~~~~~~ 79 (325)
T cd00983 57 IIEIYGPESSGKTTL-ALHAIAEA 79 (325)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHH
Confidence 778999999999944 45544443
No 475
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=83.67 E-value=11 Score=41.15 Aligned_cols=93 Identities=19% Similarity=0.359 Sum_probs=67.4
Q ss_pred CeEEEEEeCcHH--------HHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHH---Hhc-CCcEEEeCcHHHHHHHhC
Q 012319 263 HLRALIITPTRE--------LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LKA-RPELVVGTPGRLWELMSG 330 (466)
Q Consensus 263 ~~~vLil~Ptre--------La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~ 330 (466)
|-+|.||||..+ .|..++..+..++. +++++.++|.+...+.... ++. ..+|+|+|. .+.=
T Consensus 473 GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~--~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT-----VIEV 545 (677)
T COG1200 473 GRQAYVVCPLIEESEKLELQAAEELYEELKSFLP--ELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT-----VIEV 545 (677)
T ss_pred CCEEEEEeccccccccchhhhHHHHHHHHHHHcc--cceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee-----EEEe
Confidence 558999999886 45556666664433 6789999999986544333 333 789999995 3333
Q ss_pred CCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCC
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 370 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~ 370 (466)
| +++.+-.++||..|+++. ..++.++..+..+
T Consensus 546 G----VdVPnATvMVIe~AERFG----LaQLHQLRGRVGR 577 (677)
T COG1200 546 G----VDVPNATVMVIENAERFG----LAQLHQLRGRVGR 577 (677)
T ss_pred c----ccCCCCeEEEEechhhhh----HHHHHHhccccCC
Confidence 3 678888999999999975 5677777766653
No 476
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=83.39 E-value=0.73 Score=46.92 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+++.+|.|+|||+..
T Consensus 150 gllL~GPPGcGKTllA 165 (413)
T PLN00020 150 ILGIWGGKGQGKSFQC 165 (413)
T ss_pred EEEeeCCCCCCHHHHH
Confidence 5788999999999655
No 477
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=83.38 E-value=14 Score=33.55 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=22.5
Q ss_pred CcccEEEecccchhhccCCH--HHHHHHHHhCC
Q 012319 339 HTLSFFVLDEADRMIENGHF--RELQSIIDMLP 369 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~--~~l~~Il~~l~ 369 (466)
..+++||+||+-..++.|+. +.|..+++.-|
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp 128 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERP 128 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC
Confidence 56899999999988888763 45555555443
No 478
>PHA00350 putative assembly protein
Probab=83.26 E-value=9.2 Score=39.51 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=17.0
Q ss_pred cEEEecCCCCchhHHHHH-HHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL-PIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l-pil~~l 237 (466)
-.++.|..|||||+..+- .++..+
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHH
Confidence 357889999999987654 344443
No 479
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=83.14 E-value=2.2 Score=47.46 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.+|||.|||...
T Consensus 523 sFlF~GPTGVGKTELA 538 (786)
T COG0542 523 SFLFLGPTGVGKTELA 538 (786)
T ss_pred EEEeeCCCcccHHHHH
Confidence 7899999999999654
No 480
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=83.09 E-value=3.6 Score=42.51 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=14.9
Q ss_pred cCCccEEEecCCCCchhHH
Q 012319 210 QGKVDIIGAAETGSGKTLA 228 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~ 228 (466)
.|. -+++.||+|+|||..
T Consensus 167 ~Gq-~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQ-RGLIVAPPKAGKTVL 184 (415)
T ss_pred CCC-EEEEECCCCCChhHH
Confidence 344 899999999999964
No 481
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=83.04 E-value=4.7 Score=40.58 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHh---cCC--ccEEEecCCCCchhHHHHHHHHHHH
Q 012319 197 TPIQKACIPAAAH---QGK--VDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 197 t~iQ~~~i~~~l~---~~~--~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
+|||...+..+.. .++ +-++++||.|.||+..+ ..+...+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA-~~~A~~l 48 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLI-RALAQWL 48 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHH-HHHHHHH
Confidence 5777766665532 222 25679999999998654 3333444
No 482
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=83.02 E-value=1 Score=41.02 Aligned_cols=30 Identities=27% Similarity=0.515 Sum_probs=24.1
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDML 368 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l 368 (466)
..-.++++||...-+|......+..++..+
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~ 144 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEM 144 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 556899999999988887777777777655
No 483
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=82.96 E-value=7.2 Score=36.12 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=24.0
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDML 368 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l 368 (466)
+..-.++|+||...-+|......+..++..+
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~ 159 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKE 159 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHH
Confidence 3567899999999988877777777766554
No 484
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=82.94 E-value=10 Score=43.34 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=20.6
Q ss_pred HHHHHHHHH----hcCCccEEEecCCCCchhHHH
Q 012319 200 QKACIPAAA----HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 200 Q~~~i~~~l----~~~~~dvl~~a~TGSGKTl~~ 229 (466)
|...|..++ ...+.++|+.||.|+|||...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 444444443 344459999999999999654
No 485
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=82.89 E-value=1.1 Score=42.15 Aligned_cols=14 Identities=36% Similarity=0.461 Sum_probs=11.9
Q ss_pred EEEecCCCCchhHH
Q 012319 215 IIGAAETGSGKTLA 228 (466)
Q Consensus 215 vl~~a~TGSGKTl~ 228 (466)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999953
No 486
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=82.89 E-value=1.5 Score=47.90 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=34.9
Q ss_pred ccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 012319 213 VDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 286 (466)
Q Consensus 213 ~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l 286 (466)
.++++.||||||||..+++|-+-.. +--+||+=|--|++..+....++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~-------------------------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY-------------------------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC-------------------------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 3999999999999999999953221 113777778777766665544443
No 487
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=82.69 E-value=9.4 Score=38.25 Aligned_cols=20 Identities=20% Similarity=-0.140 Sum_probs=15.1
Q ss_pred cEEEecCCCCchhHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPI 233 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpi 233 (466)
-+.+.+++|+|||...+..+
T Consensus 98 i~~i~G~~g~GKT~l~~~~~ 117 (316)
T TIGR02239 98 ITEIFGEFRTGKTQLCHTLA 117 (316)
T ss_pred EEEEECCCCCCcCHHHHHHH
Confidence 56799999999996553333
No 488
>PRK07004 replicative DNA helicase; Provisional
Probab=82.68 E-value=6.4 Score=41.65 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=17.9
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
..+. -+++.|++|+|||. |++-+..++
T Consensus 211 ~~g~-liviaarpg~GKT~-~al~ia~~~ 237 (460)
T PRK07004 211 HGGE-LIIVAGRPSMGKTA-FSMNIGEYV 237 (460)
T ss_pred CCCc-eEEEEeCCCCCccH-HHHHHHHHH
Confidence 3454 67889999999994 444444443
No 489
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=82.42 E-value=6 Score=44.44 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=45.5
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh--------cCCcEEEeCc
Q 012319 261 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK--------ARPELVVGTP 321 (466)
Q Consensus 261 ~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~--------~~~dIiV~TP 321 (466)
..+.+++||+.|..-|..++..++.... .++.+++........+... +.+.|+|||.
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~----~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ 502 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGP----KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ 502 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCC----CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee
Confidence 3457899999999999999999988743 7899999988766555554 4678888885
No 490
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=82.32 E-value=16 Score=40.22 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=34.1
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHH
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 411 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~ 411 (466)
-....+|+|||.|.|+ .-..+-|..|+++-...+ .+.=+|...-|+.++...
T Consensus 506 ~~~~~VvLiDElD~Lv-tr~QdVlYn~fdWpt~~~---------------------sKLvvi~IaNTmdlPEr~ 557 (767)
T KOG1514|consen 506 KRSTTVVLIDELDILV-TRSQDVLYNIFDWPTLKN---------------------SKLVVIAIANTMDLPERL 557 (767)
T ss_pred CCCCEEEEeccHHHHh-cccHHHHHHHhcCCcCCC---------------------CceEEEEecccccCHHHH
Confidence 3456789999999997 335666777776554221 345677777787665543
No 491
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=82.32 E-value=9.9 Score=41.58 Aligned_cols=66 Identities=20% Similarity=0.189 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHh----c-CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 197 TPIQKACIPAAAH----Q-GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 197 t~iQ~~~i~~~l~----~-~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
|--|..++-.++. . -+.-+-+.|.-|-||+.|..|.+...+.. +...+.|.+|
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~----------------------GysnIyvtSP 312 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAF----------------------GYSNIYVTSP 312 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhc----------------------CcceEEEcCC
Confidence 4567666544432 1 11155667888999999999988877732 2345778889
Q ss_pred cHHHHHHHHHHHH
Q 012319 272 TRELALQVTDHLK 284 (466)
Q Consensus 272 treLa~Qv~~~l~ 284 (466)
.-+-..-++.-+.
T Consensus 313 speNlkTlFeFv~ 325 (1011)
T KOG2036|consen 313 SPENLKTLFEFVF 325 (1011)
T ss_pred ChHHHHHHHHHHH
Confidence 8886665555443
No 492
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=82.25 E-value=11 Score=38.51 Aligned_cols=92 Identities=16% Similarity=0.234 Sum_probs=63.9
Q ss_pred CCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccc
Q 012319 261 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLV 336 (466)
Q Consensus 261 ~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~ 336 (466)
.+.|.+||.+-.+.=+..|++.|.-. ++.++.++||.+..+....+. ++-||+|+|. ..+. .+
T Consensus 419 KT~PpVLIFaEkK~DVD~IhEYLLlK----GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATD-----VASK----GL 485 (610)
T KOG0341|consen 419 KTSPPVLIFAEKKADVDDIHEYLLLK----GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD-----VASK----GL 485 (610)
T ss_pred cCCCceEEEeccccChHHHHHHHHHc----cceeEEeecCcchhHHHHHHHHHhcCCCceEEEec-----chhc----cC
Confidence 35678999999998888888776432 789999999998776554443 4679999995 2222 26
Q ss_pred cCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCC
Q 012319 337 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNG 373 (466)
Q Consensus 337 ~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~ 373 (466)
+|..|.++| ...+-..|+.-...+.++.+
T Consensus 486 DFp~iqHVI--------NyDMP~eIENYVHRIGRTGR 514 (610)
T KOG0341|consen 486 DFPDIQHVI--------NYDMPEEIENYVHRIGRTGR 514 (610)
T ss_pred CCccchhhc--------cCCChHHHHHHHHHhcccCC
Confidence 666665443 34556677777777765543
No 493
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=82.21 E-value=8.3 Score=38.74 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=64.3
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCC-HHHHHHHHh-cCCcEEEeCcHHHHHHHhCCCCccccCCc
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMS-TEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHT 340 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~-~~~~~~~l~-~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 340 (466)
+--+||.+|+.+.+.|++..++.... ..++..+++... ..+....++ +..+|||+|. +|.+| ..+.+
T Consensus 305 ~~P~liF~p~I~~~eq~a~~lk~~~~--~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-----ILERG----VTfp~ 373 (441)
T COG4098 305 GRPVLIFFPEIETMEQVAAALKKKLP--KETIASVHSEDQHRKEKVEAFRDGKITLLITTT-----ILERG----VTFPN 373 (441)
T ss_pred CCcEEEEecchHHHHHHHHHHHhhCC--ccceeeeeccCccHHHHHHHHHcCceEEEEEee-----hhhcc----ccccc
Confidence 34589999999999999999966543 334555555443 223333344 4679999995 56655 77899
Q ss_pred ccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 341 LSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 341 l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
++++||+--|++. -...+.+|-.+..
T Consensus 374 vdV~Vlgaeh~vf---TesaLVQIaGRvG 399 (441)
T COG4098 374 VDVFVLGAEHRVF---TESALVQIAGRVG 399 (441)
T ss_pred ceEEEecCCcccc---cHHHHHHHhhhcc
Confidence 9999999888876 2455666665554
No 494
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.10 E-value=4.3 Score=41.39 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||.|+|||...
T Consensus 41 ~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 41 ALLFCGPRGVGKTTCA 56 (367)
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999554
No 495
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.82 E-value=0.62 Score=41.59 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=15.6
Q ss_pred cEEEecCCCCchhHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPI 233 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpi 233 (466)
-.|+.+|.|||||..|....
T Consensus 4 l~IvaG~NGsGKstv~~~~~ 23 (187)
T COG4185 4 LDIVAGPNGSGKSTVYASTL 23 (187)
T ss_pred EEEEecCCCCCceeeeeccc
Confidence 35778999999999885543
No 496
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=81.81 E-value=6.4 Score=36.17 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=20.2
Q ss_pred CcccEEEecccchhhccCCH--HHHHHHHH
Q 012319 339 HTLSFFVLDEADRMIENGHF--RELQSIID 366 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~--~~l~~Il~ 366 (466)
..+++||+||.--.+..|+. +.|..++.
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~ 150 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLK 150 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHh
Confidence 35899999999998877763 44444444
No 497
>PRK08840 replicative DNA helicase; Provisional
Probab=81.79 E-value=10 Score=40.17 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=17.9
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
..+. -+|+.|++|.|||.-. +-+..++
T Consensus 215 ~~g~-LiviaarPg~GKTafa-lnia~~~ 241 (464)
T PRK08840 215 QGSD-LIIVAARPSMGKTTFA-MNLCENA 241 (464)
T ss_pred CCCc-eEEEEeCCCCchHHHH-HHHHHHH
Confidence 4454 6677899999999544 4444443
No 498
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.77 E-value=8.1 Score=39.09 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-||..+|.|+|||+.+
T Consensus 187 GVLLYGPPGTGKTLLA 202 (406)
T COG1222 187 GVLLYGPPGTGKTLLA 202 (406)
T ss_pred ceEeeCCCCCcHHHHH
Confidence 7899999999999765
No 499
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=81.57 E-value=7 Score=34.98 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=13.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+++.+++|+|||...
T Consensus 2 ~~~~~G~~G~GKTt~~ 17 (173)
T cd03115 2 VILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999764
No 500
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=81.52 E-value=4.5 Score=44.32 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=38.7
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH--HHHHHHHHHHHHHHc
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR--ELALQVTDHLKEVAK 288 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr--eLa~Qv~~~l~~l~~ 288 (466)
+++|.|+||+|||..+.+-+.+.+.. +..++|+=|-. +|...++..++....
T Consensus 182 HtlV~GtTGsGKT~l~~~li~q~i~~-----------------------g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 182 HTLVLGTTRVGKTRLAELLITQDIRR-----------------------GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHHc-----------------------CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 89999999999998887766666521 23677777876 467777777777654
Done!