Query 012319
Match_columns 466
No_of_seqs 430 out of 2854
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 07:05:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 8E-37 2.7E-41 292.4 20.6 196 168-407 24-219 (242)
2 3fmo_B ATP-dependent RNA helic 100.0 1.4E-36 4.8E-41 300.3 18.3 188 171-407 90-279 (300)
3 2db3_A ATP-dependent RNA helic 100.0 2.2E-35 7.6E-40 306.3 22.2 198 168-407 51-248 (434)
4 3iuy_A Probable ATP-dependent 100.0 2.1E-35 7.2E-40 279.6 19.8 197 167-407 13-210 (228)
5 3ly5_A ATP-dependent RNA helic 100.0 4.9E-35 1.7E-39 283.7 20.9 192 173-408 52-245 (262)
6 1wrb_A DJVLGB; RNA helicase, D 100.0 3.2E-35 1.1E-39 282.9 19.3 200 171-406 21-220 (253)
7 3ber_A Probable ATP-dependent 100.0 1.5E-34 5.2E-39 278.1 22.5 189 171-407 41-229 (249)
8 1vec_A ATP-dependent RNA helic 100.0 2.4E-34 8.3E-39 267.6 22.9 185 173-406 3-188 (206)
9 2pl3_A Probable ATP-dependent 100.0 1.9E-34 6.6E-39 274.4 21.8 192 171-407 23-214 (236)
10 3bor_A Human initiation factor 100.0 1.1E-34 3.7E-39 276.9 19.9 190 168-406 25-215 (237)
11 1q0u_A Bstdead; DEAD protein, 100.0 1.3E-34 4.3E-39 272.7 19.0 186 173-407 4-193 (219)
12 2oxc_A Probable ATP-dependent 100.0 5.9E-34 2E-38 270.4 23.7 188 169-406 20-209 (230)
13 1qde_A EIF4A, translation init 100.0 5.8E-34 2E-38 268.7 21.0 189 169-407 10-198 (224)
14 2gxq_A Heat resistant RNA depe 100.0 1.7E-33 5.7E-38 261.9 19.9 186 174-407 2-187 (207)
15 1t6n_A Probable ATP-dependent 100.0 5.3E-33 1.8E-37 261.5 21.8 189 171-408 12-203 (220)
16 3dkp_A Probable ATP-dependent 100.0 1.2E-33 4.1E-38 270.4 16.9 194 168-406 20-221 (245)
17 2i4i_A ATP-dependent RNA helic 100.0 3.7E-32 1.3E-36 279.0 24.1 212 168-407 10-222 (417)
18 2j0s_A ATP-dependent RNA helic 100.0 2.9E-31 1E-35 272.0 21.8 188 171-407 35-222 (410)
19 3fmp_B ATP-dependent RNA helic 100.0 1.4E-30 4.9E-35 273.1 19.0 189 171-408 90-280 (479)
20 3eiq_A Eukaryotic initiation f 100.0 4E-30 1.4E-34 263.3 21.5 188 170-406 37-225 (414)
21 3l9o_A ATP-dependent RNA helic 100.0 2.2E-31 7.7E-36 303.1 12.9 182 173-417 162-343 (1108)
22 3sqw_A ATP-dependent RNA helic 100.0 2.1E-30 7.3E-35 278.3 17.5 193 180-408 28-226 (579)
23 1s2m_A Putative ATP-dependent 100.0 8E-30 2.7E-34 260.3 20.8 187 172-407 20-206 (400)
24 1fuu_A Yeast initiation factor 100.0 1.2E-29 4.3E-34 257.8 21.0 187 171-407 19-205 (394)
25 3i5x_A ATP-dependent RNA helic 100.0 6E-30 2.1E-34 273.5 19.0 194 180-408 79-277 (563)
26 1hv8_A Putative ATP-dependent 100.0 4.9E-29 1.7E-33 250.5 23.0 186 172-407 5-190 (367)
27 1xti_A Probable ATP-dependent 100.0 2.8E-29 9.5E-34 255.1 20.7 187 173-408 8-197 (391)
28 3fht_A ATP-dependent RNA helic 100.0 3.1E-29 1.1E-33 256.3 19.4 190 170-408 22-213 (412)
29 3pey_A ATP-dependent RNA helic 100.0 5.1E-29 1.7E-33 252.8 18.7 186 172-408 4-190 (395)
30 2z0m_A 337AA long hypothetical 100.0 9.3E-28 3.2E-32 238.5 22.2 172 180-407 1-172 (337)
31 2zj8_A DNA helicase, putative 99.9 1.4E-27 4.9E-32 262.6 15.7 190 174-417 2-191 (720)
32 2va8_A SSO2462, SKI2-type heli 99.9 3.3E-27 1.1E-31 259.5 16.6 191 172-417 7-197 (715)
33 3oiy_A Reverse gyrase helicase 99.9 7.5E-27 2.6E-31 240.1 15.5 178 184-406 10-204 (414)
34 4f92_B U5 small nuclear ribonu 99.9 1.7E-26 5.9E-31 271.7 15.6 195 180-418 911-1106(1724)
35 2p6r_A Afuhel308 helicase; pro 99.9 4.8E-27 1.6E-31 257.7 10.0 191 174-417 2-194 (702)
36 4a2p_A RIG-I, retinoic acid in 99.9 1.1E-25 3.8E-30 239.1 17.9 181 192-415 4-188 (556)
37 3fho_A ATP-dependent RNA helic 99.9 3.9E-26 1.3E-30 241.4 13.9 192 172-415 118-312 (508)
38 4f92_B U5 small nuclear ribonu 99.9 1.2E-25 4.1E-30 264.6 15.2 191 192-417 76-266 (1724)
39 2v1x_A ATP-dependent DNA helic 99.9 4.6E-25 1.6E-29 236.8 15.7 180 176-416 24-223 (591)
40 3tbk_A RIG-I helicase domain; 99.9 7.7E-25 2.6E-29 232.1 17.1 172 195-407 4-176 (555)
41 1tf5_A Preprotein translocase 99.9 3E-25 1E-29 240.8 12.8 150 190-369 79-248 (844)
42 2ykg_A Probable ATP-dependent 99.9 1.2E-24 4E-29 238.2 17.3 180 185-406 3-184 (696)
43 1oyw_A RECQ helicase, ATP-depe 99.9 7.1E-25 2.4E-29 232.4 13.8 185 172-416 1-197 (523)
44 2xgj_A ATP-dependent RNA helic 99.9 2.6E-24 9E-29 243.0 19.2 163 190-416 82-244 (1010)
45 4ddu_A Reverse gyrase; topoiso 99.9 1.5E-24 5.3E-29 246.9 17.1 172 190-406 74-261 (1104)
46 4a2q_A RIG-I, retinoic acid in 99.9 2.8E-24 9.5E-29 238.9 18.4 173 191-406 244-418 (797)
47 3b6e_A Interferon-induced heli 99.9 2.3E-24 8E-29 200.8 13.5 153 191-363 29-185 (216)
48 1gku_B Reverse gyrase, TOP-RG; 99.9 1.3E-24 4.4E-29 247.3 13.7 170 190-409 53-229 (1054)
49 4a4z_A Antiviral helicase SKI2 99.9 1.9E-24 6.5E-29 244.1 14.5 165 191-417 36-200 (997)
50 2fsf_A Preprotein translocase 99.9 5.7E-24 1.9E-28 230.3 13.3 150 191-370 71-240 (853)
51 3llm_A ATP-dependent RNA helic 99.9 1.2E-23 4E-28 200.2 13.8 178 183-417 49-229 (235)
52 4a2w_A RIG-I, retinoic acid in 99.9 2.6E-23 8.9E-28 234.4 15.0 174 191-406 244-418 (936)
53 1nkt_A Preprotein translocase 99.9 4.5E-23 1.5E-27 223.6 14.1 150 190-369 107-276 (922)
54 1rif_A DAR protein, DNA helica 99.9 1.4E-22 4.7E-27 197.9 10.9 154 195-409 113-266 (282)
55 4gl2_A Interferon-induced heli 99.9 1.6E-22 5.4E-27 221.4 10.3 147 195-361 7-157 (699)
56 1wp9_A ATP-dependent RNA helic 99.9 4.7E-21 1.6E-25 198.3 19.1 161 195-408 9-169 (494)
57 1gm5_A RECG; helicase, replica 99.9 2.6E-21 8.9E-26 212.6 16.8 138 183-352 357-502 (780)
58 2oca_A DAR protein, ATP-depend 99.8 4.7E-21 1.6E-25 202.1 13.3 154 194-408 112-265 (510)
59 2jlq_A Serine protease subunit 99.8 1.1E-21 3.6E-26 204.4 4.5 153 192-407 1-153 (451)
60 2ipc_A Preprotein translocase 99.8 4.2E-20 1.4E-24 199.9 16.9 133 191-353 76-215 (997)
61 2eyq_A TRCF, transcription-rep 99.8 4.5E-19 1.5E-23 203.1 21.7 168 178-406 586-762 (1151)
62 2whx_A Serine protease/ntpase/ 99.8 2.7E-21 9.3E-26 208.3 -0.0 167 178-408 155-321 (618)
63 2xau_A PRE-mRNA-splicing facto 99.8 3.3E-19 1.1E-23 196.6 15.6 190 170-417 69-261 (773)
64 2fwr_A DNA repair protein RAD2 99.8 5.3E-19 1.8E-23 184.6 15.5 137 195-407 93-230 (472)
65 3o8b_A HCV NS3 protease/helica 99.8 2.7E-20 9.1E-25 200.0 5.3 147 196-408 217-363 (666)
66 2fz4_A DNA repair protein RAD2 99.8 1.9E-18 6.5E-23 164.5 14.9 139 194-408 92-231 (237)
67 2z83_A Helicase/nucleoside tri 99.7 1.5E-18 5.1E-23 181.0 8.9 137 205-408 15-156 (459)
68 1yks_A Genome polyprotein [con 99.7 7.6E-19 2.6E-23 182.2 3.0 133 209-408 6-143 (440)
69 2wv9_A Flavivirin protease NS2 99.7 2.5E-19 8.7E-24 194.3 -1.1 155 187-408 202-376 (673)
70 3h1t_A Type I site-specific re 99.7 6.4E-18 2.2E-22 181.5 9.6 160 195-407 178-343 (590)
71 2v6i_A RNA helicase; membrane, 99.7 1.5E-17 5.3E-22 172.0 10.6 134 214-408 4-137 (431)
72 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 3.2E-17 1.1E-21 184.8 13.4 157 195-408 271-441 (1038)
73 3crv_A XPD/RAD3 related DNA he 99.7 5.4E-16 1.8E-20 165.3 13.8 133 192-354 1-187 (551)
74 3rc3_A ATP-dependent RNA helic 99.6 5E-17 1.7E-21 176.0 5.0 133 214-413 157-289 (677)
75 2vl7_A XPD; helicase, unknown 99.5 9.2E-15 3.1E-19 155.3 9.2 132 191-354 4-189 (540)
76 1z63_A Helicase of the SNF2/RA 99.5 3.3E-14 1.1E-18 149.3 10.3 149 195-406 37-188 (500)
77 3dmq_A RNA polymerase-associat 99.4 2.2E-13 7.6E-18 153.8 9.6 135 194-355 152-288 (968)
78 1z3i_X Similar to RAD54-like; 99.4 3.4E-12 1.2E-16 138.3 16.6 161 195-406 55-231 (644)
79 4a15_A XPD helicase, ATP-depen 99.4 1.8E-12 6.2E-17 139.6 12.1 83 195-300 3-88 (620)
80 3mwy_W Chromo domain-containin 99.3 6.9E-12 2.4E-16 139.2 13.1 156 195-406 236-406 (800)
81 3jux_A Protein translocase sub 99.1 3.8E-10 1.3E-14 120.6 13.8 133 191-353 72-258 (822)
82 1w36_D RECD, exodeoxyribonucle 98.9 2.7E-09 9.3E-14 114.7 12.0 134 197-369 151-287 (608)
83 3upu_A ATP-dependent DNA helic 98.1 2E-05 6.7E-10 81.7 12.8 74 187-283 17-94 (459)
84 4b3f_X DNA-binding protein smu 98.0 1.3E-05 4.5E-10 86.6 10.7 68 195-286 189-256 (646)
85 2gk6_A Regulator of nonsense t 98.0 3.7E-05 1.3E-09 82.8 13.8 70 193-286 178-247 (624)
86 2xzl_A ATP-dependent helicase 98.0 8E-05 2.7E-09 82.3 15.6 70 193-286 358-427 (802)
87 3e1s_A Exodeoxyribonuclease V, 97.9 2.9E-05 1E-09 82.6 10.7 64 195-283 189-252 (574)
88 2wjy_A Regulator of nonsense t 97.9 0.00013 4.5E-09 80.5 15.5 70 193-286 354-423 (800)
89 1c4o_A DNA nucleotide excision 97.0 0.0019 6.6E-08 69.8 10.2 70 192-288 6-78 (664)
90 2o0j_A Terminase, DNA packagin 96.7 0.007 2.4E-07 60.9 10.9 72 195-289 163-234 (385)
91 3cpe_A Terminase, DNA packagin 96.7 0.01 3.5E-07 63.2 12.6 73 195-290 163-235 (592)
92 3lfu_A DNA helicase II; SF1 he 96.6 0.0041 1.4E-07 66.7 8.7 81 194-297 8-90 (647)
93 3ec2_A DNA replication protein 96.5 0.019 6.5E-07 50.7 10.9 32 197-229 16-55 (180)
94 1uaa_A REP helicase, protein ( 96.2 0.0074 2.5E-07 65.2 7.8 81 195-298 2-85 (673)
95 3te6_A Regulatory protein SIR3 96.2 0.075 2.6E-06 51.9 14.0 24 213-237 46-69 (318)
96 2b8t_A Thymidine kinase; deoxy 95.9 0.011 3.8E-07 54.8 6.3 33 316-352 69-101 (223)
97 1pjr_A PCRA; DNA repair, DNA r 95.8 0.014 4.9E-07 63.6 7.9 82 194-298 10-93 (724)
98 2d7d_A Uvrabc system protein B 95.7 0.034 1.2E-06 60.0 9.9 68 195-288 12-82 (661)
99 3vkw_A Replicase large subunit 95.5 0.011 3.7E-07 60.4 5.1 91 214-360 163-253 (446)
100 1xx6_A Thymidine kinase; NESG, 95.4 0.019 6.6E-07 51.8 5.8 18 214-231 10-27 (191)
101 2zpa_A Uncharacterized protein 95.4 0.028 9.7E-07 60.2 7.8 103 195-366 175-277 (671)
102 2p6n_A ATP-dependent RNA helic 95.1 0.094 3.2E-06 47.0 9.4 71 264-347 55-129 (191)
103 1d2n_A N-ethylmaleimide-sensit 95.1 0.26 8.8E-06 46.4 12.9 16 214-229 66-81 (272)
104 2hjv_A ATP-dependent RNA helic 95.0 0.069 2.4E-06 46.4 8.1 72 264-348 36-111 (163)
105 2orw_A Thymidine kinase; TMTK, 95.0 0.0092 3.1E-07 53.5 2.2 17 214-230 5-21 (184)
106 2chg_A Replication factor C sm 94.9 0.28 9.7E-06 43.6 12.2 16 214-229 40-55 (226)
107 3vfd_A Spastin; ATPase, microt 94.8 0.24 8.1E-06 49.5 12.5 16 214-229 150-165 (389)
108 3bos_A Putative DNA replicatio 94.8 0.13 4.5E-06 46.8 9.6 16 214-229 54-69 (242)
109 2v1u_A Cell division control p 94.7 0.15 5.1E-06 50.1 10.6 28 341-368 131-159 (387)
110 1fuk_A Eukaryotic initiation f 94.7 0.092 3.2E-06 45.6 8.0 72 264-348 31-106 (165)
111 3eaq_A Heat resistant RNA depe 94.6 0.17 5.8E-06 46.0 10.0 70 264-346 32-105 (212)
112 3u4q_A ATP-dependent helicase/ 94.6 0.041 1.4E-06 63.7 6.9 72 195-287 10-81 (1232)
113 2rb4_A ATP-dependent RNA helic 94.6 0.073 2.5E-06 46.8 7.1 71 263-346 34-108 (175)
114 2kjq_A DNAA-related protein; s 94.2 0.049 1.7E-06 46.9 4.9 16 214-229 38-53 (149)
115 1l8q_A Chromosomal replication 94.1 0.14 4.7E-06 49.7 8.6 16 214-229 39-54 (324)
116 3u61_B DNA polymerase accessor 94.1 0.22 7.6E-06 48.1 10.0 29 339-367 104-132 (324)
117 1w4r_A Thymidine kinase; type 94.0 0.074 2.5E-06 48.1 5.9 16 214-229 22-37 (195)
118 2qby_B CDC6 homolog 3, cell di 93.8 0.39 1.3E-05 47.2 11.5 16 214-229 47-62 (384)
119 1njg_A DNA polymerase III subu 93.8 0.63 2.2E-05 41.7 12.1 16 214-229 47-62 (250)
120 1t5i_A C_terminal domain of A 93.7 0.22 7.6E-06 43.6 8.4 72 264-348 32-107 (172)
121 2z4s_A Chromosomal replication 93.6 0.17 5.9E-06 51.6 8.6 16 214-229 132-147 (440)
122 1a5t_A Delta prime, HOLB; zinc 93.2 0.45 1.5E-05 46.4 10.6 34 196-229 3-41 (334)
123 3h4m_A Proteasome-activating n 93.1 0.096 3.3E-06 49.6 5.4 53 173-229 14-68 (285)
124 3e2i_A Thymidine kinase; Zn-bi 93.1 0.15 5.2E-06 46.7 6.4 96 214-365 30-125 (219)
125 2orv_A Thymidine kinase; TP4A 93.1 0.23 8E-06 46.0 7.8 22 214-235 21-42 (234)
126 2jgn_A DBX, DDX3, ATP-dependen 93.1 0.12 4.1E-06 46.0 5.7 71 263-346 46-120 (185)
127 3syl_A Protein CBBX; photosynt 93.1 0.13 4.5E-06 49.2 6.4 16 214-229 69-84 (309)
128 1fnn_A CDC6P, cell division co 93.1 0.18 6.3E-06 49.6 7.6 16 214-229 46-61 (389)
129 2qby_A CDC6 homolog 1, cell di 93.1 0.21 7.2E-06 49.0 8.0 16 214-229 47-62 (386)
130 2j9r_A Thymidine kinase; TK1, 93.0 0.16 5.6E-06 46.5 6.5 38 214-274 30-67 (214)
131 3kl4_A SRP54, signal recogniti 92.8 0.39 1.3E-05 48.8 9.7 54 339-416 178-235 (433)
132 3cf0_A Transitional endoplasmi 92.5 0.29 1E-05 47.0 8.0 54 172-229 11-66 (301)
133 3i32_A Heat resistant RNA depe 92.3 0.37 1.3E-05 46.5 8.3 70 264-346 29-102 (300)
134 2i4i_A ATP-dependent RNA helic 92.2 0.52 1.8E-05 46.8 9.7 72 262-346 275-350 (417)
135 3i5x_A ATP-dependent RNA helic 91.8 1.4 4.9E-05 45.8 13.0 77 263-349 339-419 (563)
136 1sxj_E Activator 1 40 kDa subu 91.4 0.5 1.7E-05 46.0 8.3 30 339-369 133-162 (354)
137 3fht_A ATP-dependent RNA helic 91.3 0.45 1.5E-05 47.0 8.0 70 264-346 267-340 (412)
138 2dr3_A UPF0273 protein PH0284; 91.2 0.56 1.9E-05 42.9 8.0 19 210-229 22-40 (247)
139 2r6a_A DNAB helicase, replicat 91.2 0.63 2.2E-05 47.5 9.1 26 210-237 202-227 (454)
140 1sxj_D Activator 1 41 kDa subu 91.1 1.1 3.8E-05 43.3 10.5 16 214-229 60-75 (353)
141 3sqw_A ATP-dependent RNA helic 91.0 1.7 6E-05 45.5 12.7 77 263-349 288-368 (579)
142 1xti_A Probable ATP-dependent 90.9 0.48 1.6E-05 46.5 7.7 74 263-349 250-327 (391)
143 1jr3_A DNA polymerase III subu 90.9 0.95 3.2E-05 44.2 9.9 16 214-229 40-55 (373)
144 3pey_A ATP-dependent RNA helic 90.7 0.56 1.9E-05 45.9 8.0 76 263-351 243-322 (395)
145 2d7d_A Uvrabc system protein B 90.6 1.8 6.2E-05 46.4 12.4 77 263-352 445-525 (661)
146 1s2m_A Putative ATP-dependent 90.4 0.59 2E-05 46.1 7.9 72 263-347 258-333 (400)
147 2w0m_A SSO2452; RECA, SSPF, un 90.4 0.5 1.7E-05 42.6 6.8 16 214-229 25-40 (235)
148 3pfi_A Holliday junction ATP-d 90.4 0.44 1.5E-05 46.2 6.8 16 214-229 57-72 (338)
149 3dm5_A SRP54, signal recogniti 90.3 0.58 2E-05 47.7 7.7 17 214-230 102-118 (443)
150 3eie_A Vacuolar protein sortin 90.3 0.48 1.7E-05 45.8 7.0 52 172-229 14-68 (322)
151 1hv8_A Putative ATP-dependent 90.2 0.48 1.7E-05 45.9 7.0 73 263-348 238-314 (367)
152 2v1x_A ATP-dependent DNA helic 89.9 0.64 2.2E-05 49.3 8.0 71 263-346 267-341 (591)
153 2qp9_X Vacuolar protein sortin 89.6 0.68 2.3E-05 45.6 7.5 16 214-229 86-101 (355)
154 2j0s_A ATP-dependent RNA helic 89.5 0.73 2.5E-05 45.7 7.7 70 264-346 277-350 (410)
155 2yjt_D ATP-dependent RNA helic 89.1 0.067 2.3E-06 46.8 0.0 70 264-346 31-104 (170)
156 2db3_A ATP-dependent RNA helic 89.3 0.93 3.2E-05 45.8 8.4 69 265-346 302-374 (434)
157 1iqp_A RFCS; clamp loader, ext 89.3 3.1 0.00011 39.4 11.9 16 214-229 48-63 (327)
158 1hqc_A RUVB; extended AAA-ATPa 88.7 0.83 2.8E-05 43.7 7.2 16 214-229 40-55 (324)
159 1oyw_A RECQ helicase, ATP-depe 88.2 1 3.5E-05 46.8 8.1 70 264-346 237-310 (523)
160 1sxj_B Activator 1 37 kDa subu 88.2 1.2 4.1E-05 42.4 8.0 16 214-229 44-59 (323)
161 2q6t_A DNAB replication FORK h 88.2 1.1 3.6E-05 45.7 8.0 23 214-237 202-224 (444)
162 3bh0_A DNAB-like replicative h 88.1 2.1 7.3E-05 41.2 9.8 25 210-236 67-91 (315)
163 1c4o_A DNA nucleotide excision 87.5 1.6 5.4E-05 46.9 9.2 76 264-352 440-519 (664)
164 2fna_A Conserved hypothetical 87.5 13 0.00045 35.3 15.2 27 342-368 139-168 (357)
165 3hu3_A Transitional endoplasmi 87.2 0.81 2.8E-05 47.3 6.4 16 214-229 240-255 (489)
166 2ehv_A Hypothetical protein PH 87.1 0.85 2.9E-05 41.7 6.0 31 339-369 134-169 (251)
167 1w5s_A Origin recognition comp 86.7 2.7 9.3E-05 41.4 9.9 16 214-229 52-69 (412)
168 1g5t_A COB(I)alamin adenosyltr 86.7 2.4 8.1E-05 38.1 8.4 24 214-237 30-53 (196)
169 2eyq_A TRCF, transcription-rep 86.3 0.82 2.8E-05 52.4 6.4 78 263-351 812-893 (1151)
170 1yks_A Genome polyprotein [con 85.9 0.68 2.3E-05 47.0 5.0 68 264-345 178-245 (440)
171 1wp9_A ATP-dependent RNA helic 85.2 1.2 4E-05 44.6 6.3 74 263-349 361-446 (494)
172 2gno_A DNA polymerase III, gam 84.8 3.7 0.00013 39.4 9.4 17 213-229 19-35 (305)
173 4a1f_A DNAB helicase, replicat 84.5 0.73 2.5E-05 45.2 4.3 27 209-237 44-70 (338)
174 3n70_A Transport activator; si 84.5 0.73 2.5E-05 38.8 3.8 20 209-229 22-41 (145)
175 3co5_A Putative two-component 83.7 0.76 2.6E-05 38.7 3.5 20 209-229 25-44 (143)
176 2px0_A Flagellar biosynthesis 83.7 4.2 0.00014 38.8 9.2 18 214-231 107-124 (296)
177 1nlf_A Regulatory protein REPA 82.2 3.6 0.00012 38.6 8.0 22 209-231 28-49 (279)
178 1e9r_A Conjugal transfer prote 81.9 1.3 4.4E-05 44.7 5.0 24 214-238 55-78 (437)
179 1qvr_A CLPB protein; coiled co 81.8 2.2 7.4E-05 47.2 7.2 18 212-229 191-208 (854)
180 2xau_A PRE-mRNA-splicing facto 81.7 3.7 0.00013 44.8 8.9 75 263-346 303-393 (773)
181 3hjh_A Transcription-repair-co 81.7 4.5 0.00015 41.6 9.0 49 214-288 16-64 (483)
182 2oap_1 GSPE-2, type II secreti 81.1 1.5 5.1E-05 45.5 5.2 41 186-229 237-277 (511)
183 2v6i_A RNA helicase; membrane, 80.9 1.7 5.9E-05 43.8 5.5 54 264-321 172-225 (431)
184 3cmu_A Protein RECA, recombina 80.8 2.4 8.1E-05 51.0 7.3 31 204-235 1415-1450(2050)
185 2z0m_A 337AA long hypothetical 80.6 2.5 8.5E-05 40.2 6.4 70 263-349 220-293 (337)
186 3rc3_A ATP-dependent RNA helic 80.2 3.5 0.00012 44.3 7.9 74 265-352 322-401 (677)
187 2wv9_A Flavivirin protease NS2 79.1 1.8 6.3E-05 46.5 5.3 68 263-345 410-478 (673)
188 3fmp_B ATP-dependent RNA helic 79.0 0.4 1.4E-05 49.0 0.0 70 263-345 333-406 (479)
189 3eiq_A Eukaryotic initiation f 78.8 0.75 2.6E-05 45.5 2.0 70 264-346 281-354 (414)
190 2jlq_A Serine protease subunit 78.6 2 6.9E-05 43.6 5.2 67 265-345 190-256 (451)
191 3tbk_A RIG-I helicase domain; 78.2 5.6 0.00019 40.6 8.6 75 263-346 389-476 (555)
192 2whx_A Serine protease/ntpase/ 77.6 3.7 0.00013 43.6 7.0 67 264-344 356-422 (618)
193 2z43_A DNA repair and recombin 77.6 7.5 0.00025 37.4 8.8 17 214-230 109-125 (324)
194 4etp_A Kinesin-like protein KA 76.7 2.6 9E-05 42.2 5.3 27 203-229 132-158 (403)
195 1tue_A Replication protein E1; 76.7 4.2 0.00015 36.9 6.1 53 182-237 28-82 (212)
196 4gl2_A Interferon-induced heli 76.6 0.89 3E-05 48.7 1.9 75 263-346 400-488 (699)
197 2oca_A DAR protein, ATP-depend 76.4 6.9 0.00024 39.9 8.6 74 265-350 349-426 (510)
198 3cf2_A TER ATPase, transitiona 76.0 2.5 8.6E-05 46.3 5.3 16 214-229 240-255 (806)
199 2ykg_A Probable ATP-dependent 74.8 2.6 9E-05 45.0 5.0 78 263-349 398-488 (696)
200 3dc4_A Kinesin-like protein NO 74.7 2.2 7.5E-05 41.8 4.0 27 203-229 86-112 (344)
201 1jbk_A CLPB protein; beta barr 74.7 2.6 8.7E-05 36.1 4.1 16 214-229 45-60 (195)
202 3nwn_A Kinesin-like protein KI 74.3 2.1 7.1E-05 42.3 3.7 27 203-229 96-122 (359)
203 1p9r_A General secretion pathw 74.2 3.3 0.00011 41.8 5.3 31 199-229 154-184 (418)
204 2va8_A SSO2462, SKI2-type heli 74.2 5.7 0.0002 42.6 7.5 75 264-347 253-363 (715)
205 1u0j_A DNA replication protein 73.6 7.5 0.00026 36.6 7.3 45 183-230 74-122 (267)
206 2w58_A DNAI, primosome compone 73.5 3.2 0.00011 36.5 4.5 16 214-229 56-71 (202)
207 1bg2_A Kinesin; motor protein, 73.3 2.5 8.4E-05 41.2 3.9 27 203-229 69-95 (325)
208 2y65_A Kinesin, kinesin heavy 72.5 2.6 8.9E-05 41.7 3.9 27 203-229 76-102 (365)
209 2p65_A Hypothetical protein PF 72.2 2.5 8.5E-05 36.2 3.4 16 214-229 45-60 (187)
210 2vvg_A Kinesin-2; motor protei 72.1 2.7 9.2E-05 41.3 3.9 27 203-229 81-107 (350)
211 3cf2_A TER ATPase, transitiona 72.0 2.5 8.4E-05 46.4 3.9 53 172-229 473-528 (806)
212 1v8k_A Kinesin-like protein KI 72.0 2.3 7.7E-05 42.8 3.4 27 203-229 146-172 (410)
213 3mm4_A Histidine kinase homolo 72.0 35 0.0012 29.8 11.2 67 208-286 18-84 (206)
214 3u06_A Protein claret segregat 71.9 2.4 8.3E-05 42.6 3.6 27 203-229 130-156 (412)
215 2h58_A Kinesin-like protein KI 71.8 2.8 9.6E-05 40.9 3.9 27 203-229 72-98 (330)
216 3b6u_A Kinesin-like protein KI 71.6 2.6 8.9E-05 41.8 3.7 27 203-229 93-119 (372)
217 2bjv_A PSP operon transcriptio 71.6 2.7 9.3E-05 38.9 3.7 20 209-229 27-46 (265)
218 2zfi_A Kinesin-like protein KI 71.4 2.8 9.7E-05 41.4 3.9 27 203-229 81-107 (366)
219 2wbe_C Bipolar kinesin KRP-130 71.4 2.9 0.0001 41.5 4.0 27 203-229 92-118 (373)
220 4a14_A Kinesin, kinesin-like p 71.2 2.9 0.0001 41.0 3.9 27 203-229 75-101 (344)
221 1t5c_A CENP-E protein, centrom 70.9 2.8 9.5E-05 41.2 3.7 27 203-229 69-95 (349)
222 2nr8_A Kinesin-like protein KI 70.8 2.8 9.6E-05 41.3 3.7 27 203-229 95-121 (358)
223 2zts_A Putative uncharacterize 70.6 4.5 0.00015 36.6 4.9 16 214-229 32-47 (251)
224 1goj_A Kinesin, kinesin heavy 70.5 2.8 9.5E-05 41.3 3.6 26 204-229 73-98 (355)
225 3gbj_A KIF13B protein; kinesin 70.4 2.9 9.8E-05 41.2 3.7 27 203-229 84-110 (354)
226 3o8b_A HCV NS3 protease/helica 70.4 3.2 0.00011 44.5 4.3 66 263-345 396-461 (666)
227 1fuu_A Yeast initiation factor 70.3 0.9 3.1E-05 44.5 0.0 71 263-346 259-333 (394)
228 3lre_A Kinesin-like protein KI 70.2 2.8 9.7E-05 41.3 3.6 27 203-229 97-123 (355)
229 1x88_A Kinesin-like protein KI 69.5 2.6 8.9E-05 41.6 3.2 27 203-229 80-106 (359)
230 2heh_A KIF2C protein; kinesin, 69.4 2.8 9.7E-05 41.7 3.4 27 203-229 126-152 (387)
231 3cmu_A Protein RECA, recombina 69.0 5.1 0.00017 48.2 5.9 27 210-237 1080-1106(2050)
232 3cob_A Kinesin heavy chain-lik 68.6 2.5 8.6E-05 41.9 2.8 27 203-229 71-97 (369)
233 2gza_A Type IV secretion syste 68.6 3.6 0.00012 40.4 4.0 24 205-229 169-192 (361)
234 1ry6_A Internal kinesin; kines 68.5 3.7 0.00013 40.5 4.0 24 206-229 78-102 (360)
235 4b4t_M 26S protease regulatory 68.5 1.4 4.9E-05 44.6 1.1 54 171-229 176-232 (434)
236 3t0q_A AGR253WP; kinesin, alph 68.3 2.4 8.2E-05 41.7 2.6 27 203-229 77-103 (349)
237 2owm_A Nckin3-434, related to 68.2 3.6 0.00012 41.8 3.9 27 203-229 128-154 (443)
238 2i1q_A DNA repair and recombin 68.1 17 0.00057 34.7 8.7 17 214-230 100-116 (322)
239 1f9v_A Kinesin-like protein KA 67.8 2.4 8.1E-05 41.7 2.5 27 203-229 76-102 (347)
240 3bfn_A Kinesin-like protein KI 67.6 2.7 9.2E-05 41.9 2.8 25 205-229 92-116 (388)
241 3mwy_W Chromo domain-containin 67.6 46 0.0016 36.1 13.0 76 263-350 572-653 (800)
242 1w36_B RECB, exodeoxyribonucle 67.5 9.6 0.00033 43.7 7.8 63 214-287 18-80 (1180)
243 1ls1_A Signal recognition part 67.5 21 0.0007 33.9 9.0 16 214-229 100-115 (295)
244 2qgz_A Helicase loader, putati 67.1 6.1 0.00021 37.8 5.2 17 214-230 154-170 (308)
245 2eyu_A Twitching motility prot 67.1 2.8 9.6E-05 39.3 2.7 20 209-229 23-42 (261)
246 2p6r_A Afuhel308 helicase; pro 66.7 9 0.00031 41.0 7.0 74 264-346 243-346 (702)
247 3foz_A TRNA delta(2)-isopenten 66.0 3.3 0.00011 40.0 3.0 16 214-229 12-27 (316)
248 3exa_A TRNA delta(2)-isopenten 66.0 3.3 0.00011 40.1 3.0 16 214-229 5-20 (322)
249 3a8t_A Adenylate isopentenyltr 65.9 3.3 0.00011 40.5 3.0 16 214-229 42-57 (339)
250 2ffh_A Protein (FFH); SRP54, s 65.4 28 0.00095 35.0 9.9 17 214-230 100-116 (425)
251 2rep_A Kinesin-like protein KI 64.6 3.2 0.00011 41.2 2.7 27 203-229 107-133 (376)
252 3jvv_A Twitching mobility prot 64.3 5.3 0.00018 39.2 4.2 20 209-229 121-140 (356)
253 3hws_A ATP-dependent CLP prote 64.2 8.5 0.00029 37.5 5.7 16 214-229 53-68 (363)
254 4ag6_A VIRB4 ATPase, type IV s 64.2 5.8 0.0002 39.2 4.6 29 341-369 263-294 (392)
255 2zj8_A DNA helicase, putative 64.2 11 0.00037 40.5 7.0 74 264-347 238-344 (720)
256 3bgw_A DNAB-like replicative h 63.9 5.5 0.00019 40.4 4.4 26 210-237 196-221 (444)
257 1ojl_A Transcriptional regulat 63.9 4.2 0.00015 38.8 3.4 16 214-229 27-42 (304)
258 2pt7_A CAG-ALFA; ATPase, prote 63.7 4.4 0.00015 39.3 3.5 23 205-228 165-187 (330)
259 1kgd_A CASK, peripheral plasma 63.4 4.2 0.00014 35.4 3.0 16 214-229 7-22 (180)
260 3nbx_X ATPase RAVA; AAA+ ATPas 63.3 10 0.00035 39.1 6.3 31 197-229 28-58 (500)
261 3oiy_A Reverse gyrase helicase 63.1 4.8 0.00016 39.8 3.7 70 264-348 253-328 (414)
262 1ofh_A ATP-dependent HSL prote 63.0 15 0.00051 34.3 7.1 16 214-229 52-67 (310)
263 3hr8_A Protein RECA; alpha and 62.9 12 0.00043 36.6 6.6 23 214-237 63-85 (356)
264 3lw7_A Adenylate kinase relate 62.4 3.5 0.00012 34.8 2.3 16 214-229 3-18 (179)
265 2ze6_A Isopentenyl transferase 62.3 4.2 0.00015 37.7 3.0 16 214-229 3-18 (253)
266 4a2p_A RIG-I, retinoic acid in 62.1 4.4 0.00015 41.6 3.3 76 263-347 390-478 (556)
267 3tau_A Guanylate kinase, GMP k 61.9 4.5 0.00015 36.1 3.0 16 214-229 10-25 (208)
268 3b85_A Phosphate starvation-in 61.9 11 0.00036 33.9 5.5 31 197-229 9-39 (208)
269 4a2w_A RIG-I, retinoic acid in 61.7 10 0.00035 42.3 6.4 79 262-349 630-721 (936)
270 2ius_A DNA translocase FTSK; n 61.5 12 0.00041 38.7 6.4 24 214-237 169-192 (512)
271 1lvg_A Guanylate kinase, GMP k 61.4 5 0.00017 35.5 3.2 16 214-229 6-21 (198)
272 2qz4_A Paraplegin; AAA+, SPG7, 61.4 3.7 0.00013 37.6 2.4 16 214-229 41-56 (262)
273 1zu4_A FTSY; GTPase, signal re 61.3 27 0.00094 33.5 8.7 16 214-229 107-122 (320)
274 3u4q_B ATP-dependent helicase/ 61.0 11 0.00039 42.9 6.8 49 216-285 5-53 (1166)
275 1ex7_A Guanylate kinase; subst 61.0 3.8 0.00013 36.3 2.3 15 214-228 3-17 (186)
276 2r44_A Uncharacterized protein 60.8 4.4 0.00015 38.9 2.9 20 209-229 44-63 (331)
277 2iut_A DNA translocase FTSK; n 59.9 11 0.00039 39.4 5.9 24 214-237 216-239 (574)
278 3dmq_A RNA polymerase-associat 59.7 7.6 0.00026 43.5 4.9 91 263-370 503-599 (968)
279 1tf5_A Preprotein translocase 59.1 19 0.00066 39.3 7.7 53 265-321 434-488 (844)
280 3b9p_A CG5977-PA, isoform A; A 58.8 4.3 0.00015 38.2 2.4 16 214-229 56-71 (297)
281 3crm_A TRNA delta(2)-isopenten 58.6 5.3 0.00018 38.8 3.0 16 214-229 7-22 (323)
282 1z5z_A Helicase of the SNF2/RA 58.5 42 0.0014 31.2 9.2 75 264-350 113-193 (271)
283 3vaa_A Shikimate kinase, SK; s 58.4 6.4 0.00022 34.6 3.3 19 210-229 24-42 (199)
284 3fho_A ATP-dependent RNA helic 58.3 1.2 4E-05 46.1 -1.9 71 263-346 357-431 (508)
285 2qmh_A HPR kinase/phosphorylas 58.3 5.9 0.0002 35.7 3.0 16 214-229 36-51 (205)
286 1lv7_A FTSH; alpha/beta domain 58.1 4.4 0.00015 37.2 2.3 16 214-229 47-62 (257)
287 2ewv_A Twitching motility prot 58.1 4.6 0.00016 39.9 2.5 20 209-229 134-153 (372)
288 3trf_A Shikimate kinase, SK; a 57.3 6.4 0.00022 33.9 3.1 16 214-229 7-22 (185)
289 1qhx_A CPT, protein (chloramph 57.3 4.9 0.00017 34.4 2.3 16 214-229 5-20 (178)
290 3tr0_A Guanylate kinase, GMP k 57.2 6.6 0.00023 34.4 3.2 19 210-229 6-24 (205)
291 3t15_A Ribulose bisphosphate c 57.1 4.3 0.00015 38.5 2.0 16 214-229 38-53 (293)
292 4b4t_J 26S protease regulatory 57.0 5.9 0.0002 39.7 3.1 55 171-229 143-199 (405)
293 1vma_A Cell division protein F 56.3 35 0.0012 32.5 8.4 17 214-230 106-122 (306)
294 3d3q_A TRNA delta(2)-isopenten 56.2 6.1 0.00021 38.6 3.0 16 214-229 9-24 (340)
295 4gp7_A Metallophosphoesterase; 56.0 5.3 0.00018 34.4 2.3 17 214-230 11-27 (171)
296 1xp8_A RECA protein, recombina 56.0 8.3 0.00028 38.0 4.0 23 214-237 76-98 (366)
297 1ly1_A Polynucleotide kinase; 55.9 5.3 0.00018 34.1 2.3 16 214-229 4-19 (181)
298 2z83_A Helicase/nucleoside tri 55.7 5.2 0.00018 40.6 2.5 54 264-321 191-244 (459)
299 4fcw_A Chaperone protein CLPB; 55.6 5 0.00017 37.8 2.2 16 214-229 49-64 (311)
300 1um8_A ATP-dependent CLP prote 55.2 5.4 0.00018 39.1 2.4 16 214-229 74-89 (376)
301 4b4t_H 26S protease regulatory 55.1 6.2 0.00021 40.3 2.9 55 171-229 204-260 (467)
302 1u94_A RECA protein, recombina 54.9 9.6 0.00033 37.4 4.2 23 214-237 65-87 (356)
303 1ixz_A ATP-dependent metallopr 54.8 5.4 0.00019 36.6 2.3 53 172-229 12-66 (254)
304 3eph_A TRNA isopentenyltransfe 54.7 6 0.00021 39.6 2.7 19 350-368 210-228 (409)
305 3a00_A Guanylate kinase, GMP k 54.7 7.1 0.00024 34.0 2.9 16 214-229 3-18 (186)
306 2j41_A Guanylate kinase; GMP, 54.6 7.8 0.00027 33.9 3.2 16 214-229 8-23 (207)
307 1kag_A SKI, shikimate kinase I 54.4 8.6 0.00029 32.6 3.4 16 214-229 6-21 (173)
308 1g8p_A Magnesium-chelatase 38 54.3 7 0.00024 37.5 3.1 16 214-229 47-62 (350)
309 1s96_A Guanylate kinase, GMP k 54.2 6.5 0.00022 35.7 2.7 20 209-229 14-33 (219)
310 3ney_A 55 kDa erythrocyte memb 54.2 7.4 0.00025 34.8 3.0 16 214-229 21-36 (197)
311 3uk6_A RUVB-like 2; hexameric 54.1 12 0.00042 36.1 4.8 16 214-229 72-87 (368)
312 3euj_A Chromosome partition pr 54.1 8.6 0.00029 39.4 3.8 30 339-369 413-442 (483)
313 3kb2_A SPBC2 prophage-derived 54.1 5.9 0.0002 33.5 2.2 16 214-229 3-18 (173)
314 4h1g_A Maltose binding protein 54.0 7.6 0.00026 41.9 3.6 27 203-229 454-480 (715)
315 3vkg_A Dynein heavy chain, cyt 53.9 12 0.00041 47.1 5.6 48 181-230 874-924 (3245)
316 3pxg_A Negative regulator of g 53.7 8.9 0.0003 39.0 3.9 17 213-229 202-218 (468)
317 2qor_A Guanylate kinase; phosp 53.6 5.8 0.0002 35.1 2.2 19 210-229 11-29 (204)
318 1z6g_A Guanylate kinase; struc 53.3 8.9 0.0003 34.5 3.4 20 209-229 21-40 (218)
319 2i3b_A HCR-ntpase, human cance 52.6 8.9 0.0003 33.9 3.2 29 338-366 103-133 (189)
320 2zr9_A Protein RECA, recombina 52.5 10 0.00035 37.0 4.0 23 214-237 63-85 (349)
321 1zp6_A Hypothetical protein AT 52.3 6 0.00021 34.3 2.0 16 214-229 11-26 (191)
322 3h1t_A Type I site-specific re 51.8 34 0.0012 35.5 8.1 78 263-349 439-526 (590)
323 1f2t_A RAD50 ABC-ATPase; DNA d 51.7 6.9 0.00024 33.0 2.3 16 214-229 25-40 (149)
324 1xwi_A SKD1 protein; VPS4B, AA 51.5 8.2 0.00028 37.1 3.0 51 172-229 8-62 (322)
325 3pvs_A Replication-associated 51.4 12 0.0004 38.0 4.3 16 214-229 52-67 (447)
326 4a2q_A RIG-I, retinoic acid in 51.4 11 0.00038 41.0 4.4 78 262-348 630-720 (797)
327 3iij_A Coilin-interacting nucl 51.0 9.5 0.00033 32.7 3.1 16 214-229 13-28 (180)
328 2r2a_A Uncharacterized protein 50.8 10 0.00035 33.9 3.3 16 214-229 7-22 (199)
329 2l8b_A Protein TRAI, DNA helic 50.8 29 0.001 30.6 6.2 62 196-279 35-96 (189)
330 1np6_A Molybdopterin-guanine d 50.6 11 0.00038 32.8 3.5 15 214-228 8-22 (174)
331 1j8m_F SRP54, signal recogniti 50.5 40 0.0014 31.9 7.7 17 214-230 100-116 (297)
332 1sxj_C Activator 1 40 kDa subu 50.5 18 0.0006 34.7 5.3 16 214-229 48-63 (340)
333 2bdt_A BH3686; alpha-beta prot 50.3 7.4 0.00025 33.7 2.3 16 214-229 4-19 (189)
334 1in4_A RUVB, holliday junction 49.9 14 0.00047 35.6 4.4 16 214-229 53-68 (334)
335 3qf7_A RAD50; ABC-ATPase, ATPa 49.9 7 0.00024 38.4 2.3 16 214-229 25-40 (365)
336 3t61_A Gluconokinase; PSI-biol 49.8 7.5 0.00026 34.2 2.3 16 214-229 20-35 (202)
337 4akg_A Glutathione S-transfera 49.8 10 0.00034 47.1 4.0 27 202-229 1258-1284(2695)
338 3cmw_A Protein RECA, recombina 49.7 9.9 0.00034 45.0 3.8 91 214-354 1433-1523(1706)
339 3d8b_A Fidgetin-like protein 1 49.7 9.2 0.00031 37.3 3.1 16 214-229 119-134 (357)
340 2r8r_A Sensor protein; KDPD, P 49.7 17 0.00058 33.3 4.7 21 211-231 5-25 (228)
341 2r62_A Cell division protease 49.5 4.2 0.00014 37.6 0.5 16 214-229 46-61 (268)
342 3pxi_A Negative regulator of g 49.2 11 0.00037 40.9 3.9 18 212-229 201-218 (758)
343 2r2a_A Uncharacterized protein 49.2 5.9 0.0002 35.4 1.5 13 341-353 88-100 (199)
344 3kta_A Chromosome segregation 49.1 9.9 0.00034 32.6 2.9 16 214-229 28-43 (182)
345 1kht_A Adenylate kinase; phosp 48.9 7.9 0.00027 33.3 2.3 16 214-229 5-20 (192)
346 2c95_A Adenylate kinase 1; tra 48.8 11 0.00038 32.5 3.2 20 209-229 7-26 (196)
347 1znw_A Guanylate kinase, GMP k 48.7 11 0.00039 33.2 3.4 20 209-229 18-37 (207)
348 4akg_A Glutathione S-transfera 48.6 22 0.00076 44.2 6.7 48 181-230 891-941 (2695)
349 4b4t_L 26S protease subunit RP 48.6 7.5 0.00026 39.3 2.3 54 171-229 176-232 (437)
350 1xjc_A MOBB protein homolog; s 48.5 13 0.00043 32.4 3.5 15 214-228 6-20 (169)
351 1gvn_B Zeta; postsegregational 48.5 7.7 0.00026 36.7 2.2 16 214-229 35-50 (287)
352 4b4t_K 26S protease regulatory 48.2 7.7 0.00026 39.2 2.3 16 214-229 208-223 (428)
353 1gku_B Reverse gyrase, TOP-RG; 48.1 15 0.0005 41.6 4.8 74 263-350 275-352 (1054)
354 2x8a_A Nuclear valosin-contain 47.9 8.1 0.00028 36.2 2.3 53 173-229 7-61 (274)
355 1iy2_A ATP-dependent metallopr 47.8 10 0.00035 35.3 3.0 52 173-229 37-90 (278)
356 2cvh_A DNA repair and recombin 47.7 10 0.00034 33.5 2.8 18 214-231 22-39 (220)
357 1knq_A Gluconate kinase; ALFA/ 47.6 8.7 0.0003 32.7 2.3 16 214-229 10-25 (175)
358 1y63_A LMAJ004144AAA protein; 47.1 8.8 0.0003 33.3 2.3 16 214-229 12-27 (184)
359 2w00_A HSDR, R.ECOR124I; ATP-b 47.0 51 0.0017 37.1 8.9 25 263-287 537-561 (1038)
360 4eun_A Thermoresistant glucoki 46.9 10 0.00034 33.4 2.7 16 214-229 31-46 (200)
361 3l9o_A ATP-dependent RNA helic 46.8 26 0.0009 39.7 6.7 74 263-345 441-553 (1108)
362 2xxa_A Signal recognition part 46.8 65 0.0022 32.3 9.0 17 214-230 102-118 (433)
363 2c9o_A RUVB-like 1; hexameric 46.8 10 0.00036 38.3 3.1 16 214-229 65-80 (456)
364 1tev_A UMP-CMP kinase; ploop, 46.1 9.3 0.00032 32.9 2.3 16 214-229 5-20 (196)
365 2rhm_A Putative kinase; P-loop 45.8 8.8 0.0003 33.1 2.1 16 214-229 7-22 (193)
366 2bwj_A Adenylate kinase 5; pho 45.5 12 0.00043 32.3 3.0 16 214-229 14-29 (199)
367 1ye8_A Protein THEP1, hypothet 45.3 13 0.00044 32.3 3.1 16 214-229 2-17 (178)
368 3auy_A DNA double-strand break 45.1 8.5 0.00029 37.8 2.1 15 215-229 28-42 (371)
369 4ddu_A Reverse gyrase; topoiso 45.1 14 0.00048 42.0 4.1 77 264-351 310-388 (1104)
370 1n0w_A DNA repair protein RAD5 44.6 12 0.00043 33.4 3.0 20 214-233 26-45 (243)
371 2j37_W Signal recognition part 44.6 57 0.002 33.4 8.3 16 214-229 103-118 (504)
372 3c8u_A Fructokinase; YP_612366 44.5 13 0.00043 33.0 2.9 16 214-229 24-39 (208)
373 3io5_A Recombination and repai 44.4 20 0.00069 34.7 4.5 23 214-237 30-52 (333)
374 3fb4_A Adenylate kinase; psych 44.3 11 0.00036 33.5 2.4 16 214-229 2-17 (216)
375 3cm0_A Adenylate kinase; ATP-b 43.9 13 0.00046 31.8 3.0 16 214-229 6-21 (186)
376 3uie_A Adenylyl-sulfate kinase 43.7 14 0.00046 32.5 3.0 16 214-229 27-42 (200)
377 2zan_A Vacuolar protein sortin 43.6 13 0.00043 37.6 3.1 54 172-229 130-184 (444)
378 4a74_A DNA repair and recombin 43.4 13 0.00043 33.1 2.8 19 210-229 24-42 (231)
379 1nks_A Adenylate kinase; therm 43.1 10 0.00035 32.6 2.0 16 214-229 3-18 (194)
380 3dl0_A Adenylate kinase; phosp 42.9 12 0.00039 33.3 2.4 16 214-229 2-17 (216)
381 1zd8_A GTP:AMP phosphotransfer 42.5 10 0.00035 34.0 2.1 16 214-229 9-24 (227)
382 1e6c_A Shikimate kinase; phosp 42.5 12 0.0004 31.7 2.3 16 214-229 4-19 (173)
383 3kta_B Chromosome segregation 42.3 14 0.00048 32.1 2.8 30 340-369 86-115 (173)
384 3k1j_A LON protease, ATP-depen 42.1 21 0.00072 37.5 4.7 25 204-229 53-77 (604)
385 1cke_A CK, MSSA, protein (cyti 42.1 14 0.0005 32.7 3.0 16 214-229 7-22 (227)
386 3asz_A Uridine kinase; cytidin 42.0 14 0.00047 32.6 2.8 16 214-229 8-23 (211)
387 3qks_A DNA double-strand break 41.9 12 0.0004 33.3 2.3 16 214-229 25-40 (203)
388 1via_A Shikimate kinase; struc 41.9 12 0.00042 31.9 2.3 16 214-229 6-21 (175)
389 3lnc_A Guanylate kinase, GMP k 41.9 9.3 0.00032 34.4 1.6 19 210-229 26-44 (231)
390 3tif_A Uncharacterized ABC tra 41.7 11 0.00037 34.5 2.1 32 338-369 161-192 (235)
391 4b4t_I 26S protease regulatory 41.7 11 0.00039 37.9 2.3 54 171-229 177-233 (437)
392 3vkg_A Dynein heavy chain, cyt 41.6 14 0.00047 46.6 3.4 27 201-228 1294-1320(3245)
393 1ukz_A Uridylate kinase; trans 41.4 12 0.00042 32.7 2.3 16 214-229 17-32 (203)
394 1sxj_A Activator 1 95 kDa subu 41.3 14 0.00049 38.0 3.1 16 214-229 79-94 (516)
395 1cr0_A DNA primase/helicase; R 41.3 16 0.00056 34.2 3.3 21 209-230 33-53 (296)
396 2iyv_A Shikimate kinase, SK; t 41.0 13 0.00043 32.0 2.3 16 214-229 4-19 (184)
397 2if2_A Dephospho-COA kinase; a 40.9 12 0.00039 32.9 2.1 16 214-229 3-18 (204)
398 4f4c_A Multidrug resistance pr 40.9 68 0.0023 37.1 9.0 32 338-369 570-601 (1321)
399 1qf9_A UMP/CMP kinase, protein 40.7 15 0.00051 31.4 2.8 16 214-229 8-23 (194)
400 2bbw_A Adenylate kinase 4, AK4 40.5 12 0.00042 34.0 2.3 16 214-229 29-44 (246)
401 1q57_A DNA primase/helicase; d 40.2 17 0.00059 37.1 3.6 26 210-237 241-266 (503)
402 2qt1_A Nicotinamide riboside k 40.1 15 0.00052 32.2 2.8 16 214-229 23-38 (207)
403 2pt5_A Shikimate kinase, SK; a 39.8 14 0.00048 31.0 2.4 16 214-229 2-17 (168)
404 2chq_A Replication factor C sm 39.8 16 0.00056 34.1 3.1 16 214-229 40-55 (319)
405 2cdn_A Adenylate kinase; phosp 39.7 13 0.00046 32.4 2.3 16 214-229 22-37 (201)
406 1r6b_X CLPA protein; AAA+, N-t 39.5 18 0.0006 39.1 3.6 17 213-229 208-224 (758)
407 2v54_A DTMP kinase, thymidylat 39.4 12 0.00043 32.5 2.0 16 214-229 6-21 (204)
408 3a4m_A L-seryl-tRNA(SEC) kinas 39.0 13 0.00046 34.2 2.3 16 214-229 6-21 (260)
409 1jjv_A Dephospho-COA kinase; P 38.8 14 0.00048 32.4 2.3 16 214-229 4-19 (206)
410 2qen_A Walker-type ATPase; unk 38.8 26 0.00088 33.1 4.4 28 200-228 20-47 (350)
411 2f1r_A Molybdopterin-guanine d 38.8 9.3 0.00032 33.2 1.0 16 214-229 4-19 (171)
412 2v9p_A Replication protein E1; 38.4 17 0.00058 34.8 2.9 20 209-229 124-143 (305)
413 1g41_A Heat shock protein HSLU 37.9 15 0.0005 37.3 2.4 16 214-229 52-67 (444)
414 2jaq_A Deoxyguanosine kinase; 37.8 19 0.00064 31.2 3.0 16 214-229 2-17 (205)
415 2cbz_A Multidrug resistance-as 37.7 14 0.00047 33.8 2.1 27 339-365 144-170 (237)
416 2pbr_A DTMP kinase, thymidylat 37.6 15 0.0005 31.6 2.2 16 214-229 2-17 (195)
417 2ce7_A Cell division protein F 37.4 14 0.00048 37.8 2.3 16 214-229 51-66 (476)
418 3qkt_A DNA double-strand break 37.3 14 0.00049 35.6 2.3 16 214-229 25-40 (339)
419 2fsf_A Preprotein translocase 37.3 47 0.0016 36.3 6.4 53 265-321 443-497 (853)
420 2plr_A DTMP kinase, probable t 37.3 15 0.00052 32.0 2.3 16 214-229 6-21 (213)
421 2q5c_A NTRC family transcripti 37.1 1E+02 0.0035 27.0 7.8 61 263-329 4-66 (196)
422 1ak2_A Adenylate kinase isoenz 37.0 23 0.00077 31.9 3.5 17 213-229 17-33 (233)
423 1e4v_A Adenylate kinase; trans 37.0 15 0.00051 32.6 2.2 16 214-229 2-17 (214)
424 2i3b_A HCR-ntpase, human cance 36.9 23 0.00077 31.1 3.3 16 214-229 3-18 (189)
425 1zuh_A Shikimate kinase; alpha 36.9 16 0.00055 30.8 2.3 16 214-229 9-24 (168)
426 2o0a_A S.cerevisiae chromosome 36.7 36 0.0012 32.2 4.7 25 207-231 87-112 (298)
427 1zak_A Adenylate kinase; ATP:A 36.4 19 0.00064 32.1 2.8 16 214-229 7-22 (222)
428 1m7g_A Adenylylsulfate kinase; 36.4 19 0.00066 31.8 2.8 31 196-229 12-42 (211)
429 2vli_A Antibiotic resistance p 36.0 13 0.00045 31.7 1.6 16 214-229 7-22 (183)
430 1nkt_A Preprotein translocase 36.0 83 0.0028 34.7 8.1 53 265-321 462-516 (922)
431 2z0h_A DTMP kinase, thymidylat 35.9 17 0.00057 31.4 2.3 16 214-229 2-17 (197)
432 1rz3_A Hypothetical protein rb 35.8 20 0.00067 31.5 2.7 16 214-229 24-39 (201)
433 2pez_A Bifunctional 3'-phospho 35.8 17 0.00058 31.0 2.3 16 214-229 7-22 (179)
434 2yvu_A Probable adenylyl-sulfa 35.6 22 0.00074 30.6 3.0 16 214-229 15-30 (186)
435 1sgw_A Putative ABC transporte 35.6 16 0.00054 33.0 2.1 32 338-369 149-180 (214)
436 3b9q_A Chloroplast SRP recepto 35.5 20 0.0007 34.1 3.0 16 214-229 102-117 (302)
437 3pxi_A Negative regulator of g 35.2 15 0.00053 39.7 2.3 16 214-229 523-538 (758)
438 2h57_A ADP-ribosylation factor 35.1 15 0.00052 31.5 1.8 15 213-227 22-36 (190)
439 1rj9_A FTSY, signal recognitio 35.1 21 0.00072 34.0 3.0 16 214-229 104-119 (304)
440 2pze_A Cystic fibrosis transme 35.0 16 0.00054 33.2 2.0 26 338-363 146-171 (229)
441 1vht_A Dephospho-COA kinase; s 34.8 18 0.0006 32.1 2.3 16 214-229 6-21 (218)
442 1uf9_A TT1252 protein; P-loop, 34.8 21 0.00071 30.9 2.7 16 214-229 10-25 (203)
443 1z3i_X Similar to RAD54-like; 34.7 2.3E+02 0.0078 29.7 11.4 75 263-350 416-497 (644)
444 3nwj_A ATSK2; P loop, shikimat 34.3 28 0.00095 32.1 3.6 18 211-229 48-65 (250)
445 2xb4_A Adenylate kinase; ATP-b 34.2 18 0.00062 32.4 2.3 16 214-229 2-17 (223)
446 3gfo_A Cobalt import ATP-bindi 34.2 16 0.00055 34.3 2.0 32 338-369 159-190 (275)
447 4e22_A Cytidylate kinase; P-lo 34.1 20 0.00068 32.9 2.5 16 214-229 29-44 (252)
448 1g6h_A High-affinity branched- 34.0 17 0.00057 33.7 2.0 32 338-369 169-200 (257)
449 2h17_A ADP-ribosylation factor 33.9 16 0.00055 31.0 1.8 16 213-228 22-37 (181)
450 1odf_A YGR205W, hypothetical 3 33.9 23 0.00077 33.5 3.0 16 214-229 33-48 (290)
451 2pcj_A ABC transporter, lipopr 33.8 16 0.00054 33.1 1.8 32 338-369 156-187 (224)
452 1aky_A Adenylate kinase; ATP:A 33.7 24 0.00081 31.3 3.0 16 214-229 6-21 (220)
453 4g1u_C Hemin import ATP-bindin 33.6 17 0.00058 33.9 2.0 30 340-369 165-194 (266)
454 1ji0_A ABC transporter; ATP bi 33.5 17 0.00059 33.2 2.0 32 338-369 155-186 (240)
455 2wwf_A Thymidilate kinase, put 33.5 17 0.00058 31.8 1.9 16 214-229 12-27 (212)
456 2p5t_B PEZT; postsegregational 33.4 14 0.00047 34.0 1.3 16 214-229 34-49 (253)
457 1r6b_X CLPA protein; AAA+, N-t 33.2 17 0.00059 39.2 2.3 16 214-229 490-505 (758)
458 2dhr_A FTSH; AAA+ protein, hex 33.1 18 0.00061 37.2 2.2 16 214-229 66-81 (499)
459 1b0u_A Histidine permease; ABC 33.1 18 0.00061 33.6 2.1 32 338-369 169-200 (262)
460 2ghi_A Transport protein; mult 33.1 20 0.00069 33.2 2.4 31 339-369 172-202 (260)
461 3lhi_A Putative 6-phosphogluco 33.0 65 0.0022 29.2 5.9 27 320-349 45-71 (232)
462 3nzo_A UDP-N-acetylglucosamine 32.8 3.5E+02 0.012 26.1 12.1 88 203-320 28-119 (399)
463 2ff7_A Alpha-hemolysin translo 32.5 21 0.0007 32.9 2.4 31 338-368 161-191 (247)
464 1ltq_A Polynucleotide kinase; 32.5 20 0.00067 33.6 2.3 16 214-229 4-19 (301)
465 2yz2_A Putative ABC transporte 32.4 19 0.00064 33.6 2.1 32 338-369 154-185 (266)
466 1nn5_A Similar to deoxythymidy 32.2 19 0.00066 31.5 2.1 16 214-229 11-26 (215)
467 3m6a_A ATP-dependent protease 32.2 21 0.00071 37.1 2.6 16 214-229 110-125 (543)
468 1zd9_A ADP-ribosylation factor 31.9 16 0.00054 31.4 1.4 33 195-228 6-38 (188)
469 3sr0_A Adenylate kinase; phosp 31.9 28 0.00095 31.0 3.1 16 214-229 2-17 (206)
470 1vpl_A ABC transporter, ATP-bi 31.7 19 0.00066 33.3 2.1 32 338-369 162-193 (256)
471 3tlx_A Adenylate kinase 2; str 31.6 26 0.00091 31.8 3.0 16 214-229 31-46 (243)
472 2ixe_A Antigen peptide transpo 31.4 20 0.00068 33.5 2.1 32 338-369 172-203 (271)
473 3f9v_A Minichromosome maintena 31.3 19 0.00065 37.8 2.2 16 214-229 329-344 (595)
474 2qi9_C Vitamin B12 import ATP- 31.2 20 0.00067 33.1 2.0 27 343-369 154-180 (249)
475 2nq2_C Hypothetical ABC transp 31.2 19 0.00066 33.2 1.9 32 338-369 144-175 (253)
476 2zu0_C Probable ATP-dependent 31.1 25 0.00086 32.7 2.8 31 339-369 181-211 (267)
477 3lda_A DNA repair protein RAD5 31.0 24 0.00082 35.1 2.7 17 214-230 180-196 (400)
478 1mv5_A LMRA, multidrug resista 30.9 19 0.00066 32.9 1.9 31 339-369 156-186 (243)
479 1tf7_A KAIC; homohexamer, hexa 30.9 29 0.001 35.6 3.5 28 210-238 38-65 (525)
480 2olj_A Amino acid ABC transpor 30.9 20 0.0007 33.3 2.1 32 338-369 175-206 (263)
481 2d2e_A SUFC protein; ABC-ATPas 30.7 26 0.00088 32.2 2.7 31 339-369 160-190 (250)
482 3nh6_A ATP-binding cassette SU 30.6 16 0.00056 34.9 1.4 31 339-369 207-237 (306)
483 2ihy_A ABC transporter, ATP-bi 30.4 21 0.0007 33.6 2.0 32 338-369 177-208 (279)
484 2og2_A Putative signal recogni 30.4 27 0.00093 34.2 3.0 17 214-230 159-175 (359)
485 4ag6_A VIRB4 ATPase, type IV s 30.3 30 0.001 33.9 3.3 18 214-231 37-54 (392)
486 1qvr_A CLPB protein; coiled co 30.3 19 0.00066 39.5 2.0 16 214-229 590-605 (854)
487 3be4_A Adenylate kinase; malar 30.2 30 0.001 30.7 3.0 16 214-229 7-22 (217)
488 2jeo_A Uridine-cytidine kinase 30.2 29 0.001 31.4 3.0 16 214-229 27-42 (245)
489 2fwr_A DNA repair protein RAD2 30.1 7.7 0.00026 39.1 -1.1 69 263-349 349-421 (472)
490 2v3c_C SRP54, signal recogniti 29.9 41 0.0014 33.7 4.3 18 214-231 101-118 (432)
491 2vhj_A Ntpase P4, P4; non- hyd 29.7 33 0.0011 33.2 3.3 18 214-231 125-142 (331)
492 2grj_A Dephospho-COA kinase; T 29.7 23 0.0008 31.1 2.2 16 214-229 14-29 (192)
493 1sq5_A Pantothenate kinase; P- 29.6 38 0.0013 32.0 3.8 16 214-229 82-97 (308)
494 3ake_A Cytidylate kinase; CMP 29.5 25 0.00085 30.5 2.3 16 214-229 4-19 (208)
495 1z63_A Helicase of the SNF2/RA 29.4 91 0.0031 31.2 6.9 76 263-350 341-422 (500)
496 1e69_A Chromosome segregation 29.3 22 0.00074 34.0 2.0 15 215-229 27-41 (322)
497 3aez_A Pantothenate kinase; tr 29.0 30 0.001 33.0 3.0 16 214-229 92-107 (312)
498 3e70_C DPA, signal recognition 29.0 30 0.001 33.3 3.0 16 214-229 131-146 (328)
499 2xgj_A ATP-dependent RNA helic 28.8 64 0.0022 36.2 6.0 76 264-349 344-458 (1010)
500 1gtv_A TMK, thymidylate kinase 28.7 15 0.00053 32.1 0.8 16 214-229 2-17 (214)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=8e-37 Score=292.42 Aligned_cols=196 Identities=34% Similarity=0.482 Sum_probs=174.7
Q ss_pred cccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhh
Q 012319 168 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 247 (466)
Q Consensus 168 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~ 247 (466)
.+.+..+|.+++|++.+++++..+||..|+|+|.++|+.++.++ |++++||||||||++|++|++.++....
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~--~~l~~apTGsGKT~~~~l~~l~~l~~~~------ 95 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGL--DMVGVAQTGSGKTLSYLLPAIVHINHQP------ 95 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTC--CEEEEECTTSCHHHHHHHHHHHHHHTSC------
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEECCCcCHHHHHHHHHHHHHHHhcc------
Confidence 45667899999999999999999999999999999999997665 9999999999999999999999885321
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHH
Q 012319 248 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 327 (466)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~ 327 (466)
......++++|||+|||+||.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.++
T Consensus 96 ---------~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~ 166 (242)
T 3fe2_A 96 ---------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDF 166 (242)
T ss_dssp ---------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred ---------ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHH
Confidence 11223567899999999999999999999998889999999999999988888888999999999999999
Q ss_pred HhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 328 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 328 l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
+..+ ...++++++|||||||+|++++|...+..|+..++ ..+|+++||||++.
T Consensus 167 l~~~---~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~------------------------~~~q~~~~SAT~~~ 219 (242)
T 3fe2_A 167 LECG---KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR------------------------PDRQTLMWSATWPK 219 (242)
T ss_dssp HHHT---SCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC------------------------SSCEEEEEESCCCH
T ss_pred HHcC---CCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC------------------------ccceEEEEEeecCH
Confidence 9654 35689999999999999999999999999998887 67899999999963
No 2
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=300.35 Aligned_cols=188 Identities=32% Similarity=0.545 Sum_probs=162.0
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
...+|.+++|++.++++|..+||..||++|.++||.++.+.+.|+|++||||||||++|++|+++++..
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~----------- 158 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP----------- 158 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT-----------
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc-----------
Confidence 457899999999999999999999999999999999976622299999999999999999999998732
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHh
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 329 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~ 329 (466)
...++++|||+|||+||.|+++.+..++... ++.+..++|+...... ...+++||||||++|++++.
T Consensus 159 ---------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~ 226 (300)
T 3fmo_B 159 ---------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCS 226 (300)
T ss_dssp ---------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHT
T ss_pred ---------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHH
Confidence 2346789999999999999999999998764 6888888888764332 24578999999999999996
Q ss_pred CCCCccccCCcccEEEecccchhhc-cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 330 GGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
+. ..+.++++++|||||||+|++ .+|...+..|+..++ ..+|+|+||||+++
T Consensus 227 ~~--~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~------------------------~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 227 KL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLLFSATFED 279 (300)
T ss_dssp TT--CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC------------------------TTCEEEEEESCCCH
T ss_pred hc--CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC------------------------CCCEEEEEeccCCH
Confidence 42 246689999999999999998 689999999998887 67899999999974
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-35 Score=306.31 Aligned_cols=198 Identities=33% Similarity=0.580 Sum_probs=175.4
Q ss_pred cccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhh
Q 012319 168 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 247 (466)
Q Consensus 168 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~ 247 (466)
.+.+..+|.+++|++.++++|..+||..|||+|.++||.++.++ |++++||||||||++|++|++++++...
T Consensus 51 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~--d~i~~a~TGsGKT~a~~lpil~~l~~~~------ 122 (434)
T 2db3_A 51 VPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGR--DLMACAQTGSGKTAAFLLPILSKLLEDP------ 122 (434)
T ss_dssp CCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHHHHSC------
T ss_pred CCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC--CEEEECCCCCCchHHHHHHHHHHHHhcc------
Confidence 34567899999999999999999999999999999999997554 9999999999999999999999987531
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHH
Q 012319 248 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 327 (466)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~ 327 (466)
......++++|||+|||+||.|+++.+..++...+++++.++||.....+...+..+++|+|+||++|+++
T Consensus 123 ---------~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~ 193 (434)
T 2db3_A 123 ---------HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDF 193 (434)
T ss_dssp ---------CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHH
T ss_pred ---------cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHH
Confidence 11234578999999999999999999999998888999999999999888888889999999999999999
Q ss_pred HhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 328 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 328 l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
+.++ ...++++++|||||||+|+++||...+..|+..+... ..+|+++||||++.
T Consensus 194 l~~~---~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~----------------------~~~q~l~~SAT~~~ 248 (434)
T 2db3_A 194 VDRT---FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR----------------------PEHQTLMFSATFPE 248 (434)
T ss_dssp HHTT---SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC----------------------SSCEEEEEESCCCH
T ss_pred HHhC---CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC----------------------CCceEEEEeccCCH
Confidence 9754 3668999999999999999999999999999886421 56899999999974
No 4
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=279.63 Aligned_cols=197 Identities=30% Similarity=0.438 Sum_probs=164.1
Q ss_pred ccccccCcccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhh
Q 012319 167 EISTEFDAWNE-LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 245 (466)
Q Consensus 167 ~~~~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~ 245 (466)
..|.+...|.+ +++++.++++|.++||..|+|+|.++|+.++.++ |++++||||||||++|++|++.++.....
T Consensus 13 ~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~--~~l~~apTGsGKT~~~~l~~~~~l~~~~~--- 87 (228)
T 3iuy_A 13 LIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGI--DLIVVAQTGTGKTLSYLMPGFIHLDSQPI--- 87 (228)
T ss_dssp CCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEECCCCChHHHHHHHHHHHHHHhccc---
Confidence 34567788998 7999999999999999999999999999997654 99999999999999999999998854321
Q ss_pred hhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHH
Q 012319 246 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 325 (466)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~ 325 (466)
......++++|||+|||+||.|+++.+..+. ..++.+..++||.....+...+..+++|+|+||++|.
T Consensus 88 -----------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~ 155 (228)
T 3iuy_A 88 -----------SREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLN 155 (228)
T ss_dssp ----------------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHH
T ss_pred -----------hhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHH
Confidence 1112356789999999999999999999986 4578899999999888887888889999999999999
Q ss_pred HHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeec
Q 012319 326 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 405 (466)
Q Consensus 326 ~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl 405 (466)
+++... ...++++++|||||||++++++|...+..|+..++ ..+|+++||||+
T Consensus 156 ~~~~~~---~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~~SAT~ 208 (228)
T 3iuy_A 156 DLQMNN---SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR------------------------PDRQTVMTSATW 208 (228)
T ss_dssp HHHHTT---CCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSC------------------------SSCEEEEEESCC
T ss_pred HHHHcC---CcCcccceEEEEECHHHHhccchHHHHHHHHHhCC------------------------cCCeEEEEEeeC
Confidence 988654 35688999999999999999999999999999987 678999999999
Q ss_pred CC
Q 012319 406 AL 407 (466)
Q Consensus 406 ~~ 407 (466)
+.
T Consensus 209 ~~ 210 (228)
T 3iuy_A 209 PD 210 (228)
T ss_dssp CH
T ss_pred CH
Confidence 73
No 5
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=283.68 Aligned_cols=192 Identities=35% Similarity=0.531 Sum_probs=166.4
Q ss_pred CccccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 173 DAWNELR--LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 173 ~~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
..|.+++ +++.++++|..+||..|+++|.++|+.++.++ |++++||||||||++|++|+++.+...+
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~l~~l~~l~~~~--------- 120 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGR--DLLAAAKTGSGKTLAFLIPAVELIVKLR--------- 120 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTC--CCEECCCTTSCHHHHHHHHHHHHHHHTT---------
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--cEEEEccCCCCchHHHHHHHHHHHHhcc---------
Confidence 4566666 99999999999999999999999999997765 9999999999999999999999986431
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhC
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~ 330 (466)
.....++++|||+|||+||.|+++.+..++...++.+..++|+.....+...+..+++|+||||++|.+++..
T Consensus 121 -------~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~ 193 (262)
T 3ly5_A 121 -------FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQN 193 (262)
T ss_dssp -------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred -------ccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHc
Confidence 1122366899999999999999999999998888999999999998888888888899999999999998865
Q ss_pred CCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
.. ...++++++|||||||+|++++|...+..|+..++ ..+|+|+||||++..
T Consensus 194 ~~--~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~------------------------~~~q~l~~SAT~~~~ 245 (262)
T 3ly5_A 194 TP--GFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP------------------------TRRQTMLFSATQTRK 245 (262)
T ss_dssp CT--TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSC------------------------SSSEEEEECSSCCHH
T ss_pred cC--CcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCC------------------------CCCeEEEEEecCCHH
Confidence 32 24588999999999999999999999999999997 678999999999743
No 6
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.2e-35 Score=282.89 Aligned_cols=200 Identities=36% Similarity=0.585 Sum_probs=169.9
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
+..+|.+|+|++.++++|..+||..|+++|.++|+.++.++ |++++||||||||++|++|+++++......
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~--~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~------- 91 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHR--DIMACAQTGSGKTAAFLIPIINHLVCQDLN------- 91 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHHHTTCC--------
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEECCCCChHHHHHHHHHHHHHHhhccc-------
Confidence 56789999999999999999999999999999999997654 999999999999999999999998642100
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhC
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~ 330 (466)
..+.....++++|||+|||+||.|+++.+..++...++.++.++||.....+...+..+++|+|+||++|.+++..
T Consensus 92 ----~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~ 167 (253)
T 1wrb_A 92 ----QQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK 167 (253)
T ss_dssp ---------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT
T ss_pred ----cccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc
Confidence 0011223457999999999999999999999998888999999999988888888888999999999999999965
Q ss_pred CCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
+ ...++.+++|||||||+|++++|...+..|+..+.... ...+|+++||||++
T Consensus 168 ~---~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 168 N---KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS--------------------GINRQTLMFSATFP 220 (253)
T ss_dssp T---SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC--------------------GGGCEEEEEESSCC
T ss_pred C---CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC--------------------CCCcEEEEEEEeCC
Confidence 4 35688999999999999999999999999998664210 02579999999996
No 7
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=278.11 Aligned_cols=189 Identities=39% Similarity=0.664 Sum_probs=169.7
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
...+|.+++|++.++++|..+||..|+++|.++|+.++.++ +++++||||||||++|++|+++.+...
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~--~~lv~a~TGsGKT~~~~~~il~~l~~~---------- 108 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR--DIIGLAETGSGKTGAFALPILNALLET---------- 108 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHHHS----------
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC--CEEEEcCCCCCchhHhHHHHHHHHhcC----------
Confidence 35789999999999999999999999999999999997654 999999999999999999999988632
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhC
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~ 330 (466)
..++++|||+|||+||.|+++.+..++...++++..++||.....+...+..+++|+|+||++|.+++.+
T Consensus 109 ----------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~ 178 (249)
T 3ber_A 109 ----------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLEN 178 (249)
T ss_dssp ----------CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHH
T ss_pred ----------CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc
Confidence 2356899999999999999999999998888999999999998888888888999999999999999864
Q ss_pred CCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
. ....+..+++|||||||++++++|...+..|+..++ ..+|+++||||++.
T Consensus 179 ~--~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 179 T--KGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP------------------------RDRKTFLFSATMTK 229 (249)
T ss_dssp S--TTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSC------------------------SSSEEEEEESSCCH
T ss_pred C--CCcCccccCEEEEcChhhhhccChHHHHHHHHHhCC------------------------CCCeEEEEeccCCH
Confidence 2 124588999999999999999999999999999887 57899999999973
No 8
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-34 Score=267.56 Aligned_cols=185 Identities=34% Similarity=0.621 Sum_probs=166.2
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
.+|++++|++.++++|..+||..|+|+|.++++.++.++ |+++++|||||||++|++|++.++..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~--~~lv~apTGsGKT~~~~~~~~~~~~~------------- 67 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGR--DILARAKNGTGKSGAYLIPLLERLDL------------- 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTC--CEEEECCSSSTTHHHHHHHHHHHCCT-------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCC--CEEEECCCCCchHHHHHHHHHHHhcc-------------
Confidence 469999999999999999999999999999999997654 99999999999999999999987631
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
...++++|||+||++|+.|+++.+..++... ++.+..++|+.....+...+..+++|+|+||++|.+++..+
T Consensus 68 -------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~ 140 (206)
T 1vec_A 68 -------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG 140 (206)
T ss_dssp -------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT
T ss_pred -------cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC
Confidence 2345789999999999999999999998776 78899999999988887778889999999999999998654
Q ss_pred CCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 332 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 332 ~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
...++.+++|||||||++++.+|...+..++..++ ..+|+++||||++
T Consensus 141 ---~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~~ 188 (206)
T 1vec_A 141 ---VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP------------------------KNRQILLYSATFP 188 (206)
T ss_dssp ---CSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSC------------------------TTCEEEEEESCCC
T ss_pred ---CcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCC------------------------ccceEEEEEeeCC
Confidence 35688999999999999999999999999999987 5789999999996
No 9
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=274.44 Aligned_cols=192 Identities=36% Similarity=0.549 Sum_probs=165.0
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
...+|.++++++.++++|..+||..|+++|.++++.++.++ |+++++|||||||++|++|+++.++...
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~--~~li~a~TGsGKT~~~~~~~l~~l~~~~--------- 91 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGK--DVLGAAKTGSGKTLAFLVPVLEALYRLQ--------- 91 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHHHTT---------
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEEeCCCCcHHHHHHHHHHHHHHhhc---------
Confidence 45789999999999999999999999999999999997654 9999999999999999999999986421
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhC
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~ 330 (466)
.....++++|||+|||+||.|+++.+..++...++.+..++||.....+...+ .+++|+|+||++|.+++..
T Consensus 92 -------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~ 163 (236)
T 2pl3_A 92 -------WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDE 163 (236)
T ss_dssp -------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHH
T ss_pred -------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHh
Confidence 11224678999999999999999999999888889999999998776655544 5799999999999998864
Q ss_pred CCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
. ....+..+++|||||||++++++|...+..++..++ ..+|+++||||++.
T Consensus 164 ~--~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 164 T--VSFHATDLQMLVLDEADRILDMGFADTMNAVIENLP------------------------KKRQTLLFSATQTK 214 (236)
T ss_dssp C--SSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSC------------------------TTSEEEEEESSCCH
T ss_pred c--CCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCC------------------------CCCeEEEEEeeCCH
Confidence 3 125578899999999999999999999999999987 57899999999973
No 10
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.1e-34 Score=276.86 Aligned_cols=190 Identities=31% Similarity=0.547 Sum_probs=157.7
Q ss_pred cccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhh
Q 012319 168 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 247 (466)
Q Consensus 168 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~ 247 (466)
.+.+..+|.+++|++.++++|..+||..|+++|.++|+.++.++ |+++++|||||||++|++|+++.+..
T Consensus 25 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~--~~li~apTGsGKT~~~~l~~l~~l~~-------- 94 (237)
T 3bor_A 25 WNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGY--DVIAQAQSGTGKTATFAISILQQLEI-------- 94 (237)
T ss_dssp --CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC--CEEECCCSSHHHHHHHHHHHHHHCCT--------
T ss_pred CCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEECCCCCcHHHHHHHHHHHHHHh--------
Confidence 34556889999999999999999999999999999999997654 99999999999999999999988631
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcC-CcEEEeCcHHHHH
Q 012319 248 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWE 326 (466)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~-~dIiV~TP~~L~~ 326 (466)
...++++|||+|||+||.|+++.+..++...++.+..++||.....+...+..+ ++|+|+||++|++
T Consensus 95 ------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~ 162 (237)
T 3bor_A 95 ------------EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFD 162 (237)
T ss_dssp ------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHH
T ss_pred ------------cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHH
Confidence 224568999999999999999999999888888999999998876666666555 8999999999999
Q ss_pred HHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 327 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 327 ~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
++..+ ...+..+++|||||||+|++++|...+..|+..++ ..+|+|+||||++
T Consensus 163 ~l~~~---~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~i~~SAT~~ 215 (237)
T 3bor_A 163 MLNRR---YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN------------------------TSIQVVLLSATMP 215 (237)
T ss_dssp HHHTT---SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEECSSCC
T ss_pred HHHhC---CcCcccCcEEEECCchHhhccCcHHHHHHHHHhCC------------------------CCCeEEEEEEecC
Confidence 99654 35678899999999999999999999999999987 6789999999997
No 11
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-34 Score=272.69 Aligned_cols=186 Identities=34% Similarity=0.594 Sum_probs=164.0
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
.+|.+++|++.+++++..+||..|+++|.++++.++.++ |+++++|||||||++|++|+++.+..
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l~~------------- 68 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGE--SMVGQSQTGTGKTHAYLLPIMEKIKP------------- 68 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTC--CEEEECCSSHHHHHHHHHHHHHHCCT-------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEECCCCChHHHHHHHHHHHHHHh-------------
Confidence 579999999999999999999999999999999997665 99999999999999999999988732
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC----CcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHH
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 328 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~----~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l 328 (466)
...++++|||+|||+||.|+++.+..++... ++.+..++||.........+..+++|+|+||++|.+++
T Consensus 69 -------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l 141 (219)
T 1q0u_A 69 -------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFI 141 (219)
T ss_dssp -------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHH
T ss_pred -------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHH
Confidence 2235789999999999999999999998766 68888899998776655555568899999999999998
Q ss_pred hCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 329 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 329 ~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
..+ ...+..+++|||||||++++++|...+..|+..++ ..+|+++||||++.
T Consensus 142 ~~~---~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 142 REQ---ALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP------------------------KDLQMLVFSATIPE 193 (219)
T ss_dssp HTT---CCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC------------------------TTCEEEEEESCCCG
T ss_pred HcC---CCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC------------------------cccEEEEEecCCCH
Confidence 654 35678899999999999999999999999999887 57899999999963
No 12
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=5.9e-34 Score=270.37 Aligned_cols=188 Identities=28% Similarity=0.483 Sum_probs=162.6
Q ss_pred ccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhh
Q 012319 169 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 248 (466)
Q Consensus 169 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~ 248 (466)
+.+..+|.+++|++.+.++|..+||..|+++|.++|+.++.++ |+++++|||||||++|++|++..+..
T Consensus 20 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~--~~l~~a~TGsGKT~~~~l~~l~~l~~--------- 88 (230)
T 2oxc_A 20 LAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGL--DLIVQAKSGTGKTCVFSTIALDSLVL--------- 88 (230)
T ss_dssp ----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHCCT---------
T ss_pred CCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEECCCCCcHHHHHHHHHHHHHHh---------
Confidence 3455789999999999999999999999999999999996654 99999999999999999999988732
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHH
Q 012319 249 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 327 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~ 327 (466)
...++++|||+|||+|+.|+++.+..++... ++++..++||.....+...+ .+++|+|+||++|.++
T Consensus 89 -----------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~ 156 (230)
T 2oxc_A 89 -----------ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQL 156 (230)
T ss_dssp -----------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHH
T ss_pred -----------cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHH
Confidence 2235789999999999999999999998665 78999999999887665554 4799999999999999
Q ss_pred HhCCCCccccCCcccEEEecccchhhccC-CHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 328 MSGGEKHLVELHTLSFFVLDEADRMIENG-HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 328 l~~~~~~~~~l~~l~~lViDEad~ll~~g-~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
+..+ ...+..+++|||||||+++++| |...+..|+..++ ..+|+++||||++
T Consensus 157 ~~~~---~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~lSAT~~ 209 (230)
T 2oxc_A 157 IELD---YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP------------------------ASKQMLAVSATYP 209 (230)
T ss_dssp HHTT---SSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC------------------------SSCEEEEEESCCC
T ss_pred HhcC---CcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC------------------------CCCeEEEEEeccC
Confidence 8654 3557889999999999999988 9999999999987 5789999999986
No 13
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=5.8e-34 Score=268.65 Aligned_cols=189 Identities=30% Similarity=0.544 Sum_probs=159.5
Q ss_pred ccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhh
Q 012319 169 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 248 (466)
Q Consensus 169 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~ 248 (466)
+....+|.+++|++.+++.+..+||..|+++|.++++.++.++ ++++++|||||||++|++|+++.+..
T Consensus 10 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~--~~lv~~pTGsGKT~~~~~~~l~~l~~--------- 78 (224)
T 1qde_A 10 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH--DVLAQAQSGTGKTGTFSIAALQRIDT--------- 78 (224)
T ss_dssp CCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHCCT---------
T ss_pred CcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC--CEEEECCCCCcHHHHHHHHHHHHHhc---------
Confidence 3456789999999999999999999999999999999997654 99999999999999999999988731
Q ss_pred hhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHH
Q 012319 249 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 328 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l 328 (466)
...++++|||+|||+|+.|+++.+..++...++.+..++|+.....+...+.. ++|+|+||++|++++
T Consensus 79 -----------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~ 146 (224)
T 1qde_A 79 -----------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNI 146 (224)
T ss_dssp -----------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHH
T ss_pred -----------cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHH
Confidence 23467899999999999999999999988888999999999887666555444 899999999999998
Q ss_pred hCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 329 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 329 ~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
.+. ...+.++.+|||||||++++++|...+..++..++ ..+|+++||||+++
T Consensus 147 ~~~---~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 147 QRR---RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------------------------PTTQVVLLSATMPN 198 (224)
T ss_dssp HTT---SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEEESSCCH
T ss_pred HhC---CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCC------------------------ccCeEEEEEeecCH
Confidence 654 35678999999999999999999999999999887 67899999999974
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.7e-33 Score=261.91 Aligned_cols=186 Identities=41% Similarity=0.658 Sum_probs=163.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 012319 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 253 (466)
Q Consensus 174 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 253 (466)
+|.+++|++.+++.+...||..|+|+|.++++.++.++ ++++++|||||||++|++|+++.+...
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~--~~li~~~TGsGKT~~~~~~~~~~l~~~------------- 66 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGK--DLIGQARTGTGKTLAFALPIAERLAPS------------- 66 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHCCCC-------------
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC--CEEEECCCCChHHHHHHHHHHHHHhhc-------------
Confidence 58999999999999999999999999999999997654 999999999999999999999987421
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCC
Q 012319 254 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 333 (466)
Q Consensus 254 ~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~ 333 (466)
.....++++||++|||+|+.|+++.+..++.. +++..++|+.....+...+..+++|+|+||++|.+++..+
T Consensus 67 ----~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-- 138 (207)
T 2gxq_A 67 ----QERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG-- 138 (207)
T ss_dssp ----CCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT--
T ss_pred ----cccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC--
Confidence 11234678999999999999999999998754 6788899999887777777788999999999999998653
Q ss_pred ccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 334 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 334 ~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
...+..+++|||||||++++.++...+..++..++ ..+|+++||||++.
T Consensus 139 -~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 139 -VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP------------------------PSRQTLLFSATLPS 187 (207)
T ss_dssp -SSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSC------------------------TTSEEEEECSSCCH
T ss_pred -CcchhhceEEEEEChhHhhccchHHHHHHHHHhCC------------------------ccCeEEEEEEecCH
Confidence 35688999999999999999999999999998887 57899999999973
No 15
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.3e-33 Score=261.50 Aligned_cols=189 Identities=36% Similarity=0.636 Sum_probs=163.0
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
....|.+++|++.++++|..+||..|+++|.++++.++.++ |+++++|||||||++|++|++..+.
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~--~~li~~~TGsGKT~~~~~~~~~~~~------------ 77 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM--DVLCQAKSGMGKTAVFVLATLQQLE------------ 77 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHCC------------
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEECCCCCchhhhhhHHHHHhhh------------
Confidence 34679999999999999999999999999999999997654 9999999999999999999998762
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEECCCCHHHHHHHHhc-CCcEEEeCcHHHHHHH
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKA-RPELVVGTPGRLWELM 328 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~-~~dIiV~TP~~L~~~l 328 (466)
....++++|||+||++|+.|+++.+..++... ++++..++|+.....+...+.. .++|+|+||++|..++
T Consensus 78 --------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~ 149 (220)
T 1t6n_A 78 --------PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA 149 (220)
T ss_dssp --------CCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHH
T ss_pred --------ccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHH
Confidence 12235689999999999999999999998765 7899999999988777666654 5799999999999998
Q ss_pred hCCCCccccCCcccEEEecccchhhc-cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 329 SGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 329 ~~~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
... ...+..+++|||||||++++ .+++..+..++..++ ..+|+++||||++.
T Consensus 150 ~~~---~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 150 RNK---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLSK 202 (220)
T ss_dssp HTT---SSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC------------------------SSSEEEEEESCCCT
T ss_pred HhC---CCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC------------------------CcCeEEEEEeecCH
Confidence 654 35688999999999999986 578888999988876 57899999999985
Q ss_pred C
Q 012319 408 S 408 (466)
Q Consensus 408 ~ 408 (466)
.
T Consensus 203 ~ 203 (220)
T 1t6n_A 203 E 203 (220)
T ss_dssp T
T ss_pred H
Confidence 4
No 16
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=270.44 Aligned_cols=194 Identities=34% Similarity=0.548 Sum_probs=159.4
Q ss_pred cccccCccccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHH
Q 012319 168 ISTEFDAWNEL----RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREK 243 (466)
Q Consensus 168 ~~~~~~~f~~l----~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~ 243 (466)
.+.+..+|.++ +|++.+++++..+||..|+|+|.++|+.++.++ |++++||||||||++|++|+++++..
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~--~~l~~a~TGsGKT~~~~l~~l~~l~~---- 93 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGR--ELLASAPTGSGKTLAFSIPILMQLKQ---- 93 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHCS----
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC--CEEEECCCCCcHHHHHHHHHHHHHhh----
Confidence 34556777776 899999999999999999999999999997654 99999999999999999999998731
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHH-HHHHhcCCcEEEeCcH
Q 012319 244 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ-ERLLKARPELVVGTPG 322 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~-~~~l~~~~dIiV~TP~ 322 (466)
....++++|||+|||+||.|+++.+..++...++.+..++|+...... ......+++|+|+||+
T Consensus 94 ---------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 94 ---------------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp ---------------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred ---------------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 233567899999999999999999999998888888877766433221 1122357899999999
Q ss_pred HHHHHHhCCCCccccCCcccEEEecccchhhc---cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEE
Q 012319 323 RLWELMSGGEKHLVELHTLSFFVLDEADRMIE---NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTL 399 (466)
Q Consensus 323 ~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~---~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~l 399 (466)
+|..++... .....++++++|||||||+|++ .+|...+..++..+.. ..+|++
T Consensus 159 ~l~~~l~~~-~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~~~~ 214 (245)
T 3dkp_A 159 RLIYLLKQD-PPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS-----------------------HKVRRA 214 (245)
T ss_dssp HHHHHHHSS-SCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC-----------------------TTCEEE
T ss_pred HHHHHHHhC-CCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC-----------------------CCcEEE
Confidence 999999753 2235688999999999999998 5788889988877652 468999
Q ss_pred EEeeecC
Q 012319 400 VFSATIA 406 (466)
Q Consensus 400 l~SATl~ 406 (466)
+||||++
T Consensus 215 ~~SAT~~ 221 (245)
T 3dkp_A 215 MFSATFA 221 (245)
T ss_dssp EEESSCC
T ss_pred EEeccCC
Confidence 9999996
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.7e-32 Score=278.97 Aligned_cols=212 Identities=31% Similarity=0.516 Sum_probs=173.3
Q ss_pred cccccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhh-h
Q 012319 168 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG-K 246 (466)
Q Consensus 168 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~-~ 246 (466)
.|.+..+|.+++|++.++++|..+||..|+|+|.++||.++.++ |++++||||||||++|++|++++++....... .
T Consensus 10 ~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~--~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~ 87 (417)
T 2i4i_A 10 CPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR--DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALR 87 (417)
T ss_dssp CCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCC--CEEEEcCCCCHHHHHHHHHHHHHHHhccccchhh
Confidence 45667889999999999999999999999999999999986554 99999999999999999999999875421000 0
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHH
Q 012319 247 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 326 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~ 326 (466)
..... ........++++|||+|||+||.|+++.+..++...+++++.++||.....+...+..+++|+|+||++|.+
T Consensus 88 ~~~~~---~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~ 164 (417)
T 2i4i_A 88 AMKEN---GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVD 164 (417)
T ss_dssp HHHHC---BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHH
T ss_pred ccccc---cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHH
Confidence 00000 000112234789999999999999999999999888999999999999988888888899999999999999
Q ss_pred HHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 327 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 327 ~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
++..+ ...++.+++|||||||++++++|...+..++..+...+ ...+|+++||||++
T Consensus 165 ~l~~~---~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 165 MMERG---KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP--------------------KGVRHTMMFSATFP 221 (417)
T ss_dssp HHHTT---SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC--------------------BTTBEEEEEESCCC
T ss_pred HHHcC---CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC--------------------cCCcEEEEEEEeCC
Confidence 99654 35688999999999999999999999999987543211 13689999999996
Q ss_pred C
Q 012319 407 L 407 (466)
Q Consensus 407 ~ 407 (466)
.
T Consensus 222 ~ 222 (417)
T 2i4i_A 222 K 222 (417)
T ss_dssp H
T ss_pred H
Confidence 4
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=2.9e-31 Score=272.05 Aligned_cols=188 Identities=30% Similarity=0.529 Sum_probs=168.5
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
...+|.+++|++.++++|..+||..|+|+|.++|+.++.++ |+++++|||||||++|++|+++.+..
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~--~~lv~a~TGsGKT~~~~~~~~~~l~~----------- 101 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR--DVIAQSQSGTGKTATFSISVLQCLDI----------- 101 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHTCCT-----------
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC--CEEEECCCCCCchHHHHHHHHHHHhh-----------
Confidence 34689999999999999999999999999999999997654 99999999999999999999987621
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhC
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~ 330 (466)
...++++|||+|||+||.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++..
T Consensus 102 ---------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~ 172 (410)
T 2j0s_A 102 ---------QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR 172 (410)
T ss_dssp ---------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT
T ss_pred ---------ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh
Confidence 22456899999999999999999999998889999999999999888888888999999999999999965
Q ss_pred CCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
+ ...+..+++|||||||++++++|...+..++..++ ..+|+++||||++.
T Consensus 173 ~---~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~ 222 (410)
T 2j0s_A 173 R---SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP------------------------PATQVVLISATLPH 222 (410)
T ss_dssp T---SSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSC------------------------TTCEEEEEESCCCH
T ss_pred C---CccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCc------------------------cCceEEEEEcCCCH
Confidence 4 35678899999999999999999999999998876 57899999999963
No 19
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=273.11 Aligned_cols=189 Identities=33% Similarity=0.546 Sum_probs=157.6
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
...+|.+++|++.++++|..+||..|+|+|.++|+.++.++..++|++||||||||++|++|+++++..
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~----------- 158 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP----------- 158 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT-----------
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh-----------
Confidence 457899999999999999999999999999999999977622399999999999999999999987731
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHh
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 329 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~ 329 (466)
...++++|||+|||+||.|+++.+..+.... ++.+...+++...... ....++|+||||++|++++.
T Consensus 159 ---------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~ 226 (479)
T 3fmp_B 159 ---------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCS 226 (479)
T ss_dssp ---------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHT
T ss_pred ---------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHH
Confidence 2345689999999999999999999988754 5777777777654222 23467999999999999996
Q ss_pred CCCCccccCCcccEEEecccchhhc-cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 330 GGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
+. ..+.+.++++|||||||+|++ .++...+..|+..++ ..+|+|+||||+++.
T Consensus 227 ~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~~ 280 (479)
T 3fmp_B 227 KL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLLFSATFEDS 280 (479)
T ss_dssp TS--CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC------------------------TTSEEEEEESCCCHH
T ss_pred hc--CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC------------------------ccceEEEEeCCCCHH
Confidence 42 346678999999999999987 577788888887776 678999999999753
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=4e-30 Score=263.31 Aligned_cols=188 Identities=29% Similarity=0.553 Sum_probs=166.7
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhh
Q 012319 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 249 (466)
Q Consensus 170 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~ 249 (466)
....+|.++++++.+++.|..+||..|+++|.++|+.++.++ ++++++|||||||++|++|+++.+..
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~~~~~~~---------- 104 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY--DVIAQAQSGTGKTATFAISILQQIEL---------- 104 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC--CEEECCCSCSSSHHHHHHHHHHHCCT----------
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCC--CEEEECCCCCcccHHHHHHHHHHHhh----------
Confidence 345789999999999999999999999999999999997655 99999999999999999999987732
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh-cCCcEEEeCcHHHHHHH
Q 012319 250 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELM 328 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~-~~~dIiV~TP~~L~~~l 328 (466)
...+.++|||+||++|+.|+++.+..++...++.+..++|+.....+...+. ..++|+|+||++|++++
T Consensus 105 ----------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l 174 (414)
T 3eiq_A 105 ----------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDML 174 (414)
T ss_dssp ----------TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHH
T ss_pred ----------cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 2235689999999999999999999999888899999999998877766665 67899999999999998
Q ss_pred hCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 329 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 329 ~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
... ...+..+++|||||||+++++++...+..++..++ ..+|+|+||||++
T Consensus 175 ~~~---~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~ 225 (414)
T 3eiq_A 175 NRR---YLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN------------------------SNTQVVLLSATMP 225 (414)
T ss_dssp HHT---SSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSC------------------------TTCEEEEECSCCC
T ss_pred HcC---CcccccCcEEEEECHHHhhccCcHHHHHHHHHhCC------------------------CCCeEEEEEEecC
Confidence 653 35678899999999999999999999999998886 6789999999996
No 21
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-31 Score=303.09 Aligned_cols=182 Identities=20% Similarity=0.234 Sum_probs=156.4
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
..|..++++..+...+...++..|+|+|.++|+.++. ++ ++|++||||||||++|++|++..+.
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~-g~-dvLV~ApTGSGKTlva~l~i~~~l~-------------- 225 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDR-GE-SVLVSAHTSAGKTVVAEYAIAQSLK-------------- 225 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTT-TC-CEEEECCSSSHHHHHHHHHHHHHHH--------------
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHc-CC-CEEEECCCCCChHHHHHHHHHHHHh--------------
Confidence 4667777777776666667777899999999999854 44 9999999999999999999998873
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCC
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 332 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~ 332 (466)
.+.++||++|||+||.|+++.|..++. .++.++|+.. +..+++|+|+||++|++++.++.
T Consensus 226 ---------~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~ 285 (1108)
T 3l9o_A 226 ---------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGS 285 (1108)
T ss_dssp ---------TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCS
T ss_pred ---------cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCc
Confidence 145899999999999999999999865 5677888876 34568999999999999986542
Q ss_pred CccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHH
Q 012319 333 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 412 (466)
Q Consensus 333 ~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~ 412 (466)
..++.+.+|||||||+|++++|...+..++..++ ..+|+|+||||+++..++.
T Consensus 286 ---~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~------------------------~~~qvl~lSATipn~~e~a 338 (1108)
T 3l9o_A 286 ---EVMREVAWVIFDEVHYMRDKERGVVWEETIILLP------------------------DKVRYVFLSATIPNAMEFA 338 (1108)
T ss_dssp ---SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC------------------------TTSEEEEEECSCSSCHHHH
T ss_pred ---cccccCCEEEEhhhhhccccchHHHHHHHHHhcC------------------------CCceEEEEcCCCCCHHHHH
Confidence 4578999999999999999999999999999997 6799999999999999999
Q ss_pred HHHhh
Q 012319 413 KKLKH 417 (466)
Q Consensus 413 ~~l~~ 417 (466)
.|+..
T Consensus 339 ~~l~~ 343 (1108)
T 3l9o_A 339 EWICK 343 (1108)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99864
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=2.1e-30 Score=278.32 Aligned_cols=193 Identities=33% Similarity=0.530 Sum_probs=160.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhc-CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 012319 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ-GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 258 (466)
Q Consensus 180 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 258 (466)
|++.++++|..+||..|+|+|.++|+.++.+ ++ |+|++||||||||++|++|+++++.... .
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~-dvlv~apTGsGKTl~~~lpil~~l~~~~----------------~ 90 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDH-DVIARAKTGTGKTFAFLIPIFQHLINTK----------------F 90 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSE-EEEEECCTTSCHHHHHHHHHHHHHHHTT----------------T
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCC-eEEEEcCCCcHHHHHHHHHHHHHHHhcc----------------c
Confidence 9999999999999999999999999999843 34 9999999999999999999999987531 2
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcC----CCcEEEEEECCCCHHHHHHHHh-cCCcEEEeCcHHHHHHHhCCCC
Q 012319 259 APKGHLRALIITPTRELALQVTDHLKEVAKG----INVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEK 333 (466)
Q Consensus 259 ~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~----~~~~v~~~~gg~~~~~~~~~l~-~~~dIiV~TP~~L~~~l~~~~~ 333 (466)
....++++|||+|||+||.|+++.+..++.. ..+.+..++||.....+...+. .+++||||||++|++++...
T Consensus 91 ~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-- 168 (579)
T 3sqw_A 91 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-- 168 (579)
T ss_dssp SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH--
T ss_pred cccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc--
Confidence 2334678999999999999999999998642 3467888999998877766664 48999999999999988642
Q ss_pred ccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 334 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 334 ~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
....++.+++|||||||+|++++|...+..|+..++.... .....+|+|+||||++..
T Consensus 169 ~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~-----------------~~~~~~~~l~~SAT~~~~ 226 (579)
T 3sqw_A 169 SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS-----------------KSADNIKTLLFSATLDDK 226 (579)
T ss_dssp HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS-----------------SCTTCCEEEEEESSCCTH
T ss_pred cccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhc-----------------ccccCceEEEEeccCChH
Confidence 1245889999999999999999999999999887752211 111468999999999854
No 23
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=8e-30 Score=260.30 Aligned_cols=187 Identities=34% Similarity=0.603 Sum_probs=165.1
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
..+|.+|+|++.++++|..+||..|+|+|.++++.++.++ ++++++|||||||++|++|++.++..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~--~~li~a~TGsGKT~~~~~~~~~~~~~------------ 85 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGR--DILARAKNGTGKTAAFVIPTLEKVKP------------ 85 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTC--CEEEECCTTSCHHHHHHHHHHHHCCT------------
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC--CEEEECCCCcHHHHHHHHHHHHHHhh------------
Confidence 4689999999999999999999999999999999997665 99999999999999999999987631
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
...++++|||+||++|+.|+++.+..++...++.+..++|+.....+...+...++|+|+||++|..++...
T Consensus 86 --------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~ 157 (400)
T 1s2m_A 86 --------KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK 157 (400)
T ss_dssp --------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT
T ss_pred --------ccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC
Confidence 224568999999999999999999999988899999999999988777777788999999999999988653
Q ss_pred CCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 332 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 332 ~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
...+..+.+|||||||++++.++...+..++..++ ...|+++||||++.
T Consensus 158 ---~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~lSAT~~~ 206 (400)
T 1s2m_A 158 ---VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP------------------------PTHQSLLFSATFPL 206 (400)
T ss_dssp ---CSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSC------------------------SSCEEEEEESCCCH
T ss_pred ---CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC------------------------cCceEEEEEecCCH
Confidence 35688899999999999998888888888887776 56899999999963
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=1.2e-29 Score=257.75 Aligned_cols=187 Identities=30% Similarity=0.548 Sum_probs=165.5
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
....|.+++|++.+++++..+||..|+|+|.++++.++.++ ++++++|||+|||++|++|+++.+..
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~--~~lv~~~TGsGKT~~~~~~~~~~l~~----------- 85 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH--DVLAQAQSGTGKTGTFSIAALQRIDT----------- 85 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTC--CEEECCCSSHHHHHHHHHHHHHHCCT-----------
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC--CEEEECCCCChHHHHHHHHHHHHhhc-----------
Confidence 34679999999999999999999999999999999997765 99999999999999999999987631
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhC
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~ 330 (466)
...++++|||+||++|+.|+++.+..++...++.+..++|+.........+. +++|+|+||++|+..+..
T Consensus 86 ---------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~ 155 (394)
T 1fuu_A 86 ---------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR 155 (394)
T ss_dssp ---------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT
T ss_pred ---------cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh
Confidence 2345689999999999999999999998888899999999998876655554 689999999999999865
Q ss_pred CCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
. ...+..+++|||||||++++.++...+..++..++ ..+|+++||||++.
T Consensus 156 ~---~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~ 205 (394)
T 1fuu_A 156 R---RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------------------------PTTQVVLLSATMPN 205 (394)
T ss_dssp T---SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEECSSCCH
T ss_pred C---CcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCC------------------------CCceEEEEEEecCH
Confidence 4 25578899999999999999999999999999887 67899999999974
No 25
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=6e-30 Score=273.55 Aligned_cols=194 Identities=34% Similarity=0.526 Sum_probs=159.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcC
Q 012319 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 259 (466)
Q Consensus 180 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
|++.+++++..+||..|+|+|.++|+.++.+.+.|+|++||||||||++|++|+++++.... ..
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~----------------~~ 142 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK----------------FD 142 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT----------------TS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcc----------------cc
Confidence 99999999999999999999999999998532229999999999999999999999987531 12
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHHHHcC----CCcEEEEEECCCCHHHHHHHH-hcCCcEEEeCcHHHHHHHhCCCCc
Q 012319 260 PKGHLRALIITPTRELALQVTDHLKEVAKG----INVRVVPIVGGMSTEKQERLL-KARPELVVGTPGRLWELMSGGEKH 334 (466)
Q Consensus 260 ~~~~~~vLil~PtreLa~Qv~~~l~~l~~~----~~~~v~~~~gg~~~~~~~~~l-~~~~dIiV~TP~~L~~~l~~~~~~ 334 (466)
...++++|||+|||+||.|+++.+..++.. ..+.+..++||.....+...+ ..+++||||||++|++++.+. .
T Consensus 143 ~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--~ 220 (563)
T 3i5x_A 143 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY--S 220 (563)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH--H
T ss_pred ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc--c
Confidence 334678999999999999999999997542 246688889999887776666 458999999999999988642 1
Q ss_pred cccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 335 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 335 ~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
...++.+++|||||||+|++++|...+..|+..++.... .....+|+|+||||++..
T Consensus 221 ~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~-----------------~~~~~~~~l~~SAT~~~~ 277 (563)
T 3i5x_A 221 NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS-----------------KSADNIKTLLFSATLDDK 277 (563)
T ss_dssp HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS-----------------SCTTCCEEEEEESSCCTH
T ss_pred ccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccc-----------------cCccCceEEEEEccCCHH
Confidence 245888999999999999999999999999887752211 111468999999999864
No 26
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=4.9e-29 Score=250.45 Aligned_cols=186 Identities=35% Similarity=0.645 Sum_probs=164.8
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
..+|.+++|++.++++|..+||..|+|+|.++|+.++.+++ ++++++|||||||++|++|++..+.
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~-~~l~~~~TGsGKT~~~~~~~~~~~~------------- 70 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEY-NIVAQARTGSGKTASFAIPLIELVN------------- 70 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCS-EEEEECCSSSSHHHHHHHHHHHHSC-------------
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-CEEEECCCCChHHHHHHHHHHHHhc-------------
Confidence 46799999999999999999999999999999999987755 9999999999999999999988762
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
...++++|||+||++|+.|+++.+..++...++.+..++|+.....+...+. .++|+|+||++|.+++..+
T Consensus 71 --------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~ 141 (367)
T 1hv8_A 71 --------ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG 141 (367)
T ss_dssp --------SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT
T ss_pred --------ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC
Confidence 1245689999999999999999999999888889999999998877665555 6899999999999998654
Q ss_pred CCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 332 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 332 ~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
...+..+++|||||||++.++++...+..++..++ ...|+++||||++.
T Consensus 142 ---~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~ 190 (367)
T 1hv8_A 142 ---TLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN------------------------KDKRILLFSATMPR 190 (367)
T ss_dssp ---CSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC------------------------SSCEEEEECSSCCH
T ss_pred ---CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC------------------------CCceEEEEeeccCH
Confidence 25578999999999999999999999999998876 57899999999974
No 27
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.96 E-value=2.8e-29 Score=255.14 Aligned_cols=187 Identities=36% Similarity=0.647 Sum_probs=161.2
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
..|.+++|++.++++|..+||..|+|+|.++|+.++.++ ++++++|||+|||++|++|++..+.
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~~~~l~-------------- 71 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM--DVLCQAKSGMGKTAVFVLATLQQLE-------------- 71 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTC--CEEEECSSCSSHHHHHHHHHHHHCC--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC--cEEEECCCCCcHHHHHHHHHHHhhc--------------
Confidence 569999999999999999999999999999999996654 9999999999999999999998762
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEECCCCHHHHHHHHhc-CCcEEEeCcHHHHHHHhC
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKA-RPELVVGTPGRLWELMSG 330 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~-~~dIiV~TP~~L~~~l~~ 330 (466)
....++++|||+||++|+.|+++.+..++... ++++..++|+.........+.. .++|+|+||++|..++..
T Consensus 72 ------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~ 145 (391)
T 1xti_A 72 ------PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN 145 (391)
T ss_dssp ------CCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT
T ss_pred ------ccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc
Confidence 12335689999999999999999999998765 7899999999988777666654 479999999999998865
Q ss_pred CCCccccCCcccEEEecccchhhc-cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
. ...+..+++|||||||++++ .++...+..++..++ ..+|+++||||++..
T Consensus 146 ~---~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~ 197 (391)
T 1xti_A 146 K---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLSKE 197 (391)
T ss_dssp T---SSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC------------------------SSSEEEEEESSCCST
T ss_pred C---CccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC------------------------CCceEEEEEeeCCHH
Confidence 4 25688999999999999987 477788888887776 578999999999865
No 28
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=3.1e-29 Score=256.32 Aligned_cols=190 Identities=33% Similarity=0.540 Sum_probs=159.0
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhh
Q 012319 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 249 (466)
Q Consensus 170 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~ 249 (466)
....+|.+++|++.++++|..+||..|+|+|.++|+.++.+++.+++++||||||||++|++|+++.+..
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---------- 91 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---------- 91 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT----------
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh----------
Confidence 3467899999999999999999999999999999999977622299999999999999999999987732
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHH
Q 012319 250 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 328 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l 328 (466)
...++++|||+||++||.|+++.+..+.... ++.+....|+...... ....++|+|+||++|++++
T Consensus 92 ----------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~ 158 (412)
T 3fht_A 92 ----------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWC 158 (412)
T ss_dssp ----------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHH
T ss_pred ----------cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHH
Confidence 2345689999999999999999999987754 5778878877654322 2346899999999999998
Q ss_pred hCCCCccccCCcccEEEecccchhhc-cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 329 SGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 329 ~~~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
.+. ....+..+++|||||||++++ .++...+..++..++ ..+|+++||||++.
T Consensus 159 ~~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~ 212 (412)
T 3fht_A 159 SKL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLLFSATFED 212 (412)
T ss_dssp TTS--CSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC------------------------TTCEEEEEESCCCH
T ss_pred Hhc--CCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC------------------------CCceEEEEEeecCH
Confidence 542 235678999999999999987 678888888888877 67899999999975
Q ss_pred C
Q 012319 408 S 408 (466)
Q Consensus 408 ~ 408 (466)
.
T Consensus 213 ~ 213 (412)
T 3fht_A 213 S 213 (412)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=5.1e-29 Score=252.85 Aligned_cols=186 Identities=33% Similarity=0.549 Sum_probs=158.4
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
..+|.+++|++.++++|...||..|+|+|.++++.++.++..++++++|||||||++|++|++.++..
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------------ 71 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------------ 71 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------------
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------------
Confidence 47899999999999999999999999999999999977632299999999999999999999987631
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
...++++|||+||++|+.|+++.+..++...++.+..++++..... ...+++|+|+||++|..++...
T Consensus 72 --------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~ 139 (395)
T 3pey_A 72 --------EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRK 139 (395)
T ss_dssp --------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTT
T ss_pred --------CCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcC
Confidence 2345689999999999999999999998888888888887754321 2346899999999999998653
Q ss_pred CCccccCCcccEEEecccchhhc-cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 332 EKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 332 ~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
...+..+++|||||||++.+ .++...+..++..++ ..+|+++||||++..
T Consensus 140 ---~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~ 190 (395)
T 3pey_A 140 ---LMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP------------------------KDTQLVLFSATFADA 190 (395)
T ss_dssp ---CBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC------------------------TTCEEEEEESCCCHH
T ss_pred ---CcccccCCEEEEEChhhhcCccccHHHHHHHHHhCC------------------------CCcEEEEEEecCCHH
Confidence 35688999999999999987 678888888888876 578999999999743
No 30
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=9.3e-28 Score=238.52 Aligned_cols=172 Identities=34% Similarity=0.617 Sum_probs=152.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcC
Q 012319 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 259 (466)
Q Consensus 180 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
|++.+.++|..+||..|+|+|.++++.++.++ ++++++|||+|||++|++|++..
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~--~~lv~~~TGsGKT~~~~~~~~~~----------------------- 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGK--NVVVRAKTGSGKTAAYAIPILEL----------------------- 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHH-----------------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC--CEEEEcCCCCcHHHHHHHHHHhh-----------------------
Confidence 57889999999999999999999999996654 99999999999999999998753
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 260 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 260 ~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
+.++|||+||++|+.|+++.+..++...++.+..++|+.....+...+. .++|+|+||++|..++..+ ...+.
T Consensus 56 ---~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~---~~~~~ 128 (337)
T 2z0m_A 56 ---GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKG---VIDLS 128 (337)
T ss_dssp ---TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTT---SCCGG
T ss_pred ---cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcC---Ccchh
Confidence 2479999999999999999999998888899999999998877666555 4899999999999988653 35578
Q ss_pred cccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 340 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 340 ~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
.+++|||||||++.++++...+..++..++ ...|+++||||++.
T Consensus 129 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~SAT~~~ 172 (337)
T 2z0m_A 129 SFEIVIIDEADLMFEMGFIDDIKIILAQTS------------------------NRKITGLFSATIPE 172 (337)
T ss_dssp GCSEEEEESHHHHHHTTCHHHHHHHHHHCT------------------------TCSEEEEEESCCCH
T ss_pred hCcEEEEEChHHhhccccHHHHHHHHhhCC------------------------cccEEEEEeCcCCH
Confidence 899999999999999999999999998887 56899999999974
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.95 E-value=1.4e-27 Score=262.65 Aligned_cols=190 Identities=22% Similarity=0.311 Sum_probs=163.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 012319 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 253 (466)
Q Consensus 174 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 253 (466)
.|.+++|++.+.+.+...||..|+|+|.++|+.++..++ +++++||||||||++|.+|+++.+...
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~-~~lv~apTGsGKT~~~~l~il~~~~~~------------- 67 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGK-NALISIPTASGKTLIAEIAMVHRILTQ------------- 67 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTC-EEEEECCGGGCHHHHHHHHHHHHHHHH-------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCC-cEEEEcCCccHHHHHHHHHHHHHHHhC-------------
Confidence 588999999999999999999999999999998445565 999999999999999999999988632
Q ss_pred hhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCC
Q 012319 254 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 333 (466)
Q Consensus 254 ~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~ 333 (466)
+.++||++|+|+||.|+++.+..+.. .+++++.++|+...... ....++|+|+||++|..++.+.
T Consensus 68 ---------~~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~-- 132 (720)
T 2zj8_A 68 ---------GGKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHG-- 132 (720)
T ss_dssp ---------CSEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHT--
T ss_pred ---------CCEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcC--
Confidence 35899999999999999999965543 47899999998654332 2347899999999999888653
Q ss_pred ccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHH
Q 012319 334 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 413 (466)
Q Consensus 334 ~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~ 413 (466)
...++++++|||||||++.+.++...+..++..++ ...|+|+||||+++..++..
T Consensus 133 -~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------------------------~~~~ii~lSATl~n~~~~~~ 187 (720)
T 2zj8_A 133 -SSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------------------------GKAQIIGLSATIGNPEELAE 187 (720)
T ss_dssp -CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------------------------TTBEEEEEECCCSCHHHHHH
T ss_pred -hhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------------------------cCCeEEEEcCCcCCHHHHHH
Confidence 24478999999999999998899999999998886 35899999999999999999
Q ss_pred HHhh
Q 012319 414 KLKH 417 (466)
Q Consensus 414 ~l~~ 417 (466)
|+..
T Consensus 188 ~l~~ 191 (720)
T 2zj8_A 188 WLNA 191 (720)
T ss_dssp HTTE
T ss_pred HhCC
Confidence 9864
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.94 E-value=3.3e-27 Score=259.50 Aligned_cols=191 Identities=24% Similarity=0.288 Sum_probs=162.8
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
...|.+++|++.+.+.+...||..|+|+|.++|+.++..++ +++++||||||||++|.+++++.+...
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~-~~lv~apTGsGKT~~~~l~il~~~~~~----------- 74 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGN-RLLLTSPTGSGKTLIAEMGIISFLLKN----------- 74 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTC-CEEEECCTTSCHHHHHHHHHHHHHHHS-----------
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCC-cEEEEcCCCCcHHHHHHHHHHHHHHHC-----------
Confidence 35799999999999999999999999999999999555666 999999999999999999999987521
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
+.++||++|+|+||.|+++.+..+. ..+++++.++|+...... ....++|+|+||++|..++.++
T Consensus 75 -----------~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~ 139 (715)
T 2va8_A 75 -----------GGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHR 139 (715)
T ss_dssp -----------CSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHC
T ss_pred -----------CCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCC
Confidence 3589999999999999999996443 357889989988754332 2247899999999999988653
Q ss_pred CCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHH
Q 012319 332 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 411 (466)
Q Consensus 332 ~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~ 411 (466)
...++++++|||||||.+.+.++...+..++..++ ..|+|+||||+++..++
T Consensus 140 ---~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-------------------------~~~ii~lSATl~n~~~~ 191 (715)
T 2va8_A 140 ---PEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-------------------------RRNLLALSATISNYKQI 191 (715)
T ss_dssp ---CGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-------------------------TSEEEEEESCCTTHHHH
T ss_pred ---hhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-------------------------cCcEEEEcCCCCCHHHH
Confidence 24488999999999999988889999999887774 47999999999999999
Q ss_pred HHHHhh
Q 012319 412 RKKLKH 417 (466)
Q Consensus 412 ~~~l~~ 417 (466)
..|+..
T Consensus 192 ~~~l~~ 197 (715)
T 2va8_A 192 AKWLGA 197 (715)
T ss_dssp HHHHTC
T ss_pred HHHhCC
Confidence 999874
No 33
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.94 E-value=7.5e-27 Score=240.08 Aligned_cols=178 Identities=17% Similarity=0.151 Sum_probs=138.6
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCC
Q 012319 184 LMKSIYR-LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 262 (466)
Q Consensus 184 l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (466)
+.+.+.. +|| .|+|+|.++|+.++.++ |++++||||||||++|++|++..+. .
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~--~~lv~apTGsGKT~~~l~~~~~~~~-----------------------~ 63 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGK--SFTMVAPTGVGKTTFGMMTALWLAR-----------------------K 63 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTC--CEECCSCSSSSHHHHHHHHHHHHHT-----------------------T
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCC--CEEEEeCCCCCHHHHHHHHHHHHhc-----------------------C
Confidence 3444544 566 89999999999997654 9999999999999999999887651 2
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCH---HHHHHHHhcC-CcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST---EKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~---~~~~~~l~~~-~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
++++|||+|||+||.|+++.+..++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. ..+
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~ 137 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQ 137 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hcc
Confidence 56899999999999999999999887 78999999999998 5555556555 99999999999888742 567
Q ss_pred CcccEEEecccchhh----------c-cCCHHH-HHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 339 HTLSFFVLDEADRMI----------E-NGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 339 ~~l~~lViDEad~ll----------~-~g~~~~-l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
..+++|||||||++. + ++|... +..++..++.... .-.-.....+|+++||||+.
T Consensus 138 ~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~-------------~~~l~~~~~~~~i~~SAT~~ 204 (414)
T 3oiy_A 138 KRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI-------------YERPKNLKPGILVVSSATAK 204 (414)
T ss_dssp CCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-------------CCCCTTCCCCEEEESSCCSS
T ss_pred ccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchh-------------hhhcccCCCceEEEEecCCC
Confidence 899999999997654 4 778777 7888877641000 00000014689999999943
No 34
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.94 E-value=1.7e-26 Score=271.73 Aligned_cols=195 Identities=25% Similarity=0.306 Sum_probs=156.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcC
Q 012319 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 259 (466)
Q Consensus 180 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
|.....++++..+|..++|+|.++|+.+++.+. |++++||||||||++|.+|+++.+...
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~-nvlv~APTGSGKTliaelail~~l~~~------------------- 970 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDD-NVFVGAPTGSGKTICAEFAILRMLLQS------------------- 970 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCS-CEEEECCTTSCCHHHHHHHHHHHHHHC-------------------
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCC-cEEEEeCCCCCchHHHHHHHHHHHHhC-------------------
Confidence 456778888888999999999999999988877 999999999999999999999998642
Q ss_pred CCCCeEEEEEeCcHHHHHHHHHHHHHHH-cCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 260 PKGHLRALIITPTRELALQVTDHLKEVA-KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 260 ~~~~~~vLil~PtreLa~Qv~~~l~~l~-~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
.+.++|||+|||+||.|+++.+...+ ...+++|+.++|+...... ...+++||||||++|..++.+. .....+
T Consensus 971 --~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~-~~~~~l 1044 (1724)
T 4f92_B 971 --SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRW-KQRKNV 1044 (1724)
T ss_dssp --TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTT-TTCHHH
T ss_pred --CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCc-cccccc
Confidence 23479999999999999999997654 5578999999998654332 3356899999999987777542 222457
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhhc
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 418 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~~ 418 (466)
++|++|||||+|.|.+ .++..++.++..+. ++......++|+|+||||++|+.++.+||...
T Consensus 1045 ~~v~lvViDE~H~l~d-~rg~~le~il~rl~-----------------~i~~~~~~~~riI~lSATl~N~~dla~WL~~~ 1106 (1724)
T 4f92_B 1045 QNINLFVVDEVHLIGG-ENGPVLEVICSRMR-----------------YISSQIERPIRIVALSSSLSNAKDVAHWLGCS 1106 (1724)
T ss_dssp HSCSEEEECCGGGGGS-TTHHHHHHHHHHHH-----------------HHHHTTSSCCEEEEEESCBTTHHHHHHHHTCC
T ss_pred ceeeEEEeechhhcCC-CCCccHHHHHHHHH-----------------HHHhhcCCCceEEEEeCCCCCHHHHHHHhCCC
Confidence 8999999999998875 57777777765543 12222236789999999999999999999753
No 35
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.94 E-value=4.8e-27 Score=257.73 Aligned_cols=191 Identities=19% Similarity=0.239 Sum_probs=156.9
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 174 AWNELR--LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 174 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
+|.+|+ |++.+.+.+...||..|+|+|.++++.++. ++ +++++||||||||++|.+|+++.+..
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~-~~-~~lv~apTGsGKT~~~~l~il~~~~~------------ 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFS-GK-NLLLAMPTAAGKTLLAEMAMVREAIK------------ 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTT-CS-CEEEECSSHHHHHHHHHHHHHHHHHT------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhC-CC-cEEEEcCCccHHHHHHHHHHHHHHHh------------
Confidence 477788 999999999999999999999999999754 55 99999999999999999999988741
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
+.++||++|+|+||.|+++.++.+ ...+++++.++|+...... ....++|+|+||++|..++.++
T Consensus 68 -----------~~~~l~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~ 132 (702)
T 2p6r_A 68 -----------GGKSLYVVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR 132 (702)
T ss_dssp -----------TCCEEEEESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT
T ss_pred -----------CCcEEEEeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC
Confidence 348999999999999999999644 3458899999998754322 1247899999999999998764
Q ss_pred CCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHH
Q 012319 332 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 411 (466)
Q Consensus 332 ~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~ 411 (466)
...++.+++|||||||.+.+.++...+..++..+... ....|+|+||||+++..++
T Consensus 133 ---~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~---------------------~~~~~ii~lSATl~n~~~~ 188 (702)
T 2p6r_A 133 ---ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---------------------NKALRVIGLSATAPNVTEI 188 (702)
T ss_dssp ---CSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH---------------------CTTCEEEEEECCCTTHHHH
T ss_pred ---hhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc---------------------CcCceEEEECCCcCCHHHH
Confidence 2447899999999999999888998888888776311 1468999999999999999
Q ss_pred HHHHhh
Q 012319 412 RKKLKH 417 (466)
Q Consensus 412 ~~~l~~ 417 (466)
..|+..
T Consensus 189 ~~~l~~ 194 (702)
T 2p6r_A 189 AEWLDA 194 (702)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 999874
No 36
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.93 E-value=1.1e-25 Score=239.06 Aligned_cols=181 Identities=17% Similarity=0.180 Sum_probs=135.6
Q ss_pred CCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 192 GFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 192 g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
+...|+|+|.++|+.++.++ ++|+++|||||||++|++|+++.+... ....++++|||+|
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~--~~l~~~~tGsGKT~~~~~~~~~~~~~~------------------~~~~~~~~lil~P 63 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGK--NALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLAT 63 (556)
T ss_dssp ----CCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEECS
T ss_pred CCCCCCHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHHHHHHhC------------------cccCCCeEEEEeC
Confidence 44589999999999997654 999999999999999999999888431 1223568999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ 351 (466)
|++|+.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|.+++..+. ...+..+++|||||||+
T Consensus 64 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~ 141 (556)
T 4a2p_A 64 KVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHN 141 (556)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGG
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcc
Confidence 9999999999999999888899999999998777666777789999999999999996542 12688999999999999
Q ss_pred hhccCCHHHHH--HHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC--CCHHHHHHH
Q 012319 352 MIENGHFRELQ--SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA--LSADFRKKL 415 (466)
Q Consensus 352 ll~~g~~~~l~--~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~--~~~~~~~~l 415 (466)
+.+++.+..+. .+...+.. ....+|+|+||||++ +..++..|+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~l~lSAT~~~~~~~~~~~~~ 188 (556)
T 4a2p_A 142 TTGNHPYNVLMTRYLEQKFNS---------------------ASQLPQILGLTASVGVGNAKNIEETI 188 (556)
T ss_dssp CSTTSHHHHHHHHHHHHHHCC------------------------CCEEEEEESCCCCTTCSSHHHHH
T ss_pred cCCcchHHHHHHHHHHhhhcc---------------------cCCCCeEEEEeCCcccCchhhHHHHH
Confidence 98777655542 12222211 114689999999995 333444443
No 37
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.93 E-value=3.9e-26 Score=241.42 Aligned_cols=192 Identities=26% Similarity=0.417 Sum_probs=134.8
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhc-CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ-GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
...|...++++.+.+.+...||..|+++|.++|+.++.+ ++ ++|+++|||||||++|++|++.++..
T Consensus 118 l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~-~~ll~apTGsGKT~~~~~~il~~l~~----------- 185 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPR-NMIGQSQSGTGKTAAFALTMLSRVDA----------- 185 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHHCSSCC-CEEEECCSSTTSHHHHHHHHHHHSCT-----------
T ss_pred cccccccccccccccccccccccCcHHHHHHHHHHHHcCCCC-CEEEECCCCccHHHHHHHHHHHHHHh-----------
Confidence 344566678899999999999999999999999999776 34 99999999999999999999988732
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhC
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~ 330 (466)
...++++|||+||++|+.|+++.+..++...++.+...+++.... .....++|+|+||++|+.++..
T Consensus 186 ---------~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~ 252 (508)
T 3fho_A 186 ---------SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKR 252 (508)
T ss_dssp ---------TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHT
T ss_pred ---------CCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHc
Confidence 234568999999999999999999999877777766666554332 2234789999999999998865
Q ss_pred CCCccccCCcccEEEecccchhhc-cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC-
Q 012319 331 GEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS- 408 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~- 408 (466)
. ...+..+++|||||||++.+ .++...+..++..++ ...|+|+||||++..
T Consensus 253 ~---~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~lSAT~~~~~ 305 (508)
T 3fho_A 253 R---QLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP------------------------RNTQIVLFSATFSERV 305 (508)
T ss_dssp T---CSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSC------------------------TTCEEEEEESCCSTHH
T ss_pred C---CccccCCCEEEEechhhhcccCCcHHHHHHHHHhCC------------------------cCCeEEEEeCCCCHHH
Confidence 4 25678999999999999987 688899999999887 578999999999863
Q ss_pred HHHHHHH
Q 012319 409 ADFRKKL 415 (466)
Q Consensus 409 ~~~~~~l 415 (466)
..+..++
T Consensus 306 ~~~~~~~ 312 (508)
T 3fho_A 306 EKYAERF 312 (508)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3344443
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=1.2e-25 Score=264.59 Aligned_cols=191 Identities=17% Similarity=0.215 Sum_probs=150.3
Q ss_pred CCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 192 GFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 192 g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
||..++++|.+++|.+++.++ |+|+|||||||||++|.+++++.+.+.... .......+.++|||+|
T Consensus 76 g~~~ln~iQs~~~~~al~~~~-N~lv~APTGsGKTlva~l~il~~l~~~~~~------------~~~~~~~~~k~lyiaP 142 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDE-NLLLCAPTGAGKTNVALMCMLREIGKHINM------------DGTINVDDFKIIYIAP 142 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCC-CEEEECCTTSCCHHHHHHHHHHHHGGGCCT------------TSSCCTTSCEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHcCCC-cEEEEeCCcchHHHHHHHHHHHHHHhhccc------------cccccCCCCEEEEECC
Confidence 799999999999999988887 999999999999999999999998643110 0112345679999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ 351 (466)
+|+||.|+++.|.+.+...+++|..++|+.....+ ....++||||||+++..++.+. .....++.|++|||||+|.
T Consensus 143 ~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~-~~~~~l~~v~~vIiDEvH~ 218 (1724)
T 4f92_B 143 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKG-GERTYTQLVRLIILDEIHL 218 (1724)
T ss_dssp SHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSS-TTHHHHTTEEEEEETTGGG
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCC-ccchhhcCcCEEEEecchh
Confidence 99999999999999998899999999999865432 2346899999999986555432 2223478999999999997
Q ss_pred hhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhh
Q 012319 352 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 417 (466)
Q Consensus 352 ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~ 417 (466)
|-+ .++..++.++..+.. .........|+|++|||++|..++++||..
T Consensus 219 l~d-~RG~~lE~~l~rl~~-----------------~~~~~~~~~riI~LSATl~N~~dvA~wL~~ 266 (1724)
T 4f92_B 219 LHD-DRGPVLEALVARAIR-----------------NIEMTQEDVRLIGLSATLPNYEDVATFLRV 266 (1724)
T ss_dssp GGS-TTHHHHHHHHHHHHH-----------------HHHHHTCCCEEEEEECSCTTHHHHHHHTTC
T ss_pred cCC-ccHHHHHHHHHHHHH-----------------HHHhCCCCCcEEEEecccCCHHHHHHHhCC
Confidence 754 687787777654320 000011578999999999999999999974
No 39
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.92 E-value=4.6e-25 Score=236.77 Aligned_cols=180 Identities=17% Similarity=0.209 Sum_probs=142.6
Q ss_pred ccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 012319 176 NELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 254 (466)
Q Consensus 176 ~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 254 (466)
.++++++.+...|.. +||..|+|+|.++|+.++.++ |+|+++|||+|||++|++|++..
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~--d~lv~~pTGsGKTl~~~lpal~~------------------ 83 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGK--EVFLVMPTGGGKSLCYQLPALCS------------------ 83 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTC--CEEEECCTTSCTTHHHHHHHHTS------------------
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCC--CEEEEECCCChHHHHHHHHHHHc------------------
Confidence 457889999999998 799999999999999997655 99999999999999999999742
Q ss_pred hhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH------hcCCcEEEeCcHHHH---
Q 012319 255 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL------KARPELVVGTPGRLW--- 325 (466)
Q Consensus 255 ~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l------~~~~dIiV~TP~~L~--- 325 (466)
..++|||+||++|+.|+++.|..+ ++.+..++|+.........+ ...++|||+||++|.
T Consensus 84 --------~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~ 151 (591)
T 2v1x_A 84 --------DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSK 151 (591)
T ss_dssp --------SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCH
T ss_pred --------CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccH
Confidence 237999999999999999999987 67888899998876554332 357899999999874
Q ss_pred ---HHHhCCCCccccCCcccEEEecccchhhccC--CHHHHHH---HHHhCCCCCCCCCCCccccchhhhhcccCCCCce
Q 012319 326 ---ELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFRELQS---IIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 397 (466)
Q Consensus 326 ---~~l~~~~~~~~~l~~l~~lViDEad~ll~~g--~~~~l~~---Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q 397 (466)
+.+.. ...+..+.+|||||||++.++| |...+.. +...+ +.+|
T Consensus 152 ~~~~~l~~----~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~-------------------------~~~~ 202 (591)
T 2v1x_A 152 MFMSRLEK----AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF-------------------------PNAS 202 (591)
T ss_dssp HHHHHHHH----HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC-------------------------TTSE
T ss_pred HHHHHHHh----hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC-------------------------CCCc
Confidence 23321 2457889999999999999888 5444332 33333 3689
Q ss_pred EEEEeeecCCC--HHHHHHHh
Q 012319 398 TLVFSATIALS--ADFRKKLK 416 (466)
Q Consensus 398 ~ll~SATl~~~--~~~~~~l~ 416 (466)
+|+||||++.. .++..+|.
T Consensus 203 ii~lSAT~~~~v~~~i~~~l~ 223 (591)
T 2v1x_A 203 LIGLTATATNHVLTDAQKILC 223 (591)
T ss_dssp EEEEESSCCHHHHHHHHHHTT
T ss_pred EEEEecCCCHHHHHHHHHHhC
Confidence 99999999753 23444543
No 40
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.92 E-value=7.7e-25 Score=232.12 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=136.5
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.|+|+|.++|+.++.++ ++|+++|||||||++|++|+++.+... ....++++|||+||++
T Consensus 4 ~~~~~Q~~~i~~~~~~~--~~l~~~~tGsGKT~~~~~~~~~~~~~~------------------~~~~~~~~lil~P~~~ 63 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGK--NTIICAPTGCGKTFVSLLICEHHLKKF------------------PCGQKGKVVFFANQIP 63 (555)
T ss_dssp CCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEECSSHH
T ss_pred CCcHHHHHHHHHHhCCC--CEEEEeCCCChHHHHHHHHHHHHHHhc------------------ccCCCCEEEEEeCCHH
Confidence 79999999999997654 999999999999999999999988531 1223668999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhc
Q 012319 275 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 354 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~ 354 (466)
|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|..++..+. ...+..+++|||||||++..
T Consensus 64 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~ 141 (555)
T 3tbk_A 64 VYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSK 141 (555)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCST
T ss_pred HHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCC
Confidence 9999999999999988999999999997766666666789999999999999997542 12578899999999999987
Q ss_pred cCCHHHHH-HHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 355 NGHFRELQ-SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 355 ~g~~~~l~-~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
.+.+..+. ..+..... ......+|+|+||||+..
T Consensus 142 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 142 NHPYNQIMFRYLDHKLG-------------------ESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp TCHHHHHHHHHHHHHTS-------------------SCCSCCCEEEEEESCCCC
T ss_pred cchHHHHHHHHHHhhhc-------------------cccCCCCeEEEEecCccc
Confidence 65443332 22222110 011145799999999964
No 41
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.92 E-value=3e-25 Score=240.76 Aligned_cols=150 Identities=21% Similarity=0.294 Sum_probs=125.3
Q ss_pred HCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 012319 190 RLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 269 (466)
Q Consensus 190 ~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil 269 (466)
.+|| .|||+|..++|.++ .| . |+.++||+|||++|+||++.+.+ .+++|+||
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll-~G--~-Iaea~TGeGKTlaf~LP~~l~aL-----------------------~g~~vlVl 130 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALH-DG--N-IAEMKTGEGKTLTSTLPVYLNAL-----------------------TGKGVHVV 130 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHH-TT--S-EEECCTTSCHHHHHHHHHHHHHT-----------------------TSSCEEEE
T ss_pred HcCC-CCcHHHHHhhHHHh-CC--C-EEEccCCcHHHHHHHHHHHHHHH-----------------------cCCCEEEE
Confidence 4899 99999999999984 55 4 89999999999999999985432 14579999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCCC---CccccCCcccEEE
Q 012319 270 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFV 345 (466)
Q Consensus 270 ~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~l~~lV 345 (466)
+|||+||.|+++.+..++..+++++++++||.+...+ ....++||+|||||+| .++|.... .....++.+.++|
T Consensus 131 tptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 131 TVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAV 208 (844)
T ss_dssp ESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEE
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEE
Confidence 9999999999999999999999999999999987543 3345799999999999 56554321 1235679999999
Q ss_pred ecccchhh-ccC---------------CHHHHHHHHHhCC
Q 012319 346 LDEADRMI-ENG---------------HFRELQSIIDMLP 369 (466)
Q Consensus 346 iDEad~ll-~~g---------------~~~~l~~Il~~l~ 369 (466)
|||||+|| |++ |+..+..|+..|+
T Consensus 209 lDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~ 248 (844)
T 1tf5_A 209 IDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLK 248 (844)
T ss_dssp EETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCC
T ss_pred ECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCc
Confidence 99999998 775 6788999998886
No 42
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.92 E-value=1.2e-24 Score=238.18 Aligned_cols=180 Identities=16% Similarity=0.158 Sum_probs=136.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCe
Q 012319 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 264 (466)
Q Consensus 185 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (466)
..++..+||..|+|+|.++|+.++.++ |+|+++|||+|||++|++|+++++... ....+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~--~~iv~~~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~ 62 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKF------------------PQGQKG 62 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHHHHS------------------CTTCCC
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHHHHHHHHHhC------------------ccCCCC
Confidence 345677999999999999999997654 999999999999999999999987532 112235
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEE
Q 012319 265 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 344 (466)
Q Consensus 265 ~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~l 344 (466)
++|||+||++|+.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|++++..+. ...+..+++|
T Consensus 63 ~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~v 140 (696)
T 2ykg_A 63 KVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLM 140 (696)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS--SCCGGGCSEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc--ccccccccEE
Confidence 89999999999999999999999888899999999987655555666789999999999999997542 1257889999
Q ss_pred EecccchhhccCCHHHHH-HHHHh-CCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 345 VLDEADRMIENGHFRELQ-SIIDM-LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 345 ViDEad~ll~~g~~~~l~-~Il~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
||||||++.....+..+. ..+.. +. ......+|+|+||||+.
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~--------------------~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 141 IFDECHNTSKQHPYNMIMFNYLDQKLG--------------------GSSGPLPQVIGLTASVG 184 (696)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHT--------------------TCCSCCCEEEEEESCCC
T ss_pred EEeCCCcccCcccHHHHHHHHHHHhhc--------------------ccCCCCCeEEEEeCccc
Confidence 999999987554333322 11211 11 01115689999999997
No 43
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.92 E-value=7.1e-25 Score=232.45 Aligned_cols=185 Identities=18% Similarity=0.208 Sum_probs=145.3
Q ss_pred cCccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 012319 172 FDAWNELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 250 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 250 (466)
+..|++|+|++.+.+.|.. +||..|+|+|.++|+.++.++ |+++++|||+|||++|++|++..
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~--d~lv~apTGsGKTl~~~lp~l~~-------------- 64 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGR--DCLVVMPTGGGKSLCYQIPALLL-------------- 64 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHS--------------
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCC--CEEEECCCCcHHHHHHHHHHHHh--------------
Confidence 3578999999999999998 899999999999999997655 99999999999999999998742
Q ss_pred hhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHH----HHhcCCcEEEeCcHHHHH
Q 012319 251 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER----LLKARPELVVGTPGRLWE 326 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~----~l~~~~dIiV~TP~~L~~ 326 (466)
..++|||+|+++|+.|+++.+..+ ++.+..++|+........ .....++|+|+||++|..
T Consensus 65 ------------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~ 128 (523)
T 1oyw_A 65 ------------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLML 128 (523)
T ss_dssp ------------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTS
T ss_pred ------------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC
Confidence 136999999999999999999875 678888888887655432 234568999999999952
Q ss_pred HHhCCCCccccCCcccEEEecccchhhccC--CHH---HHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEE
Q 012319 327 LMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR---ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 401 (466)
Q Consensus 327 ~l~~~~~~~~~l~~l~~lViDEad~ll~~g--~~~---~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~ 401 (466)
.. ....+....+.+|||||||++.++| |.. .+..++..++ ..|+++|
T Consensus 129 ~~---~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------------------------~~~~i~l 180 (523)
T 1oyw_A 129 DN---FLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-------------------------TLPFMAL 180 (523)
T ss_dssp TT---HHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-------------------------TSCEEEE
T ss_pred hH---HHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-------------------------CCCEEEE
Confidence 21 1111334789999999999999887 433 3344444443 5789999
Q ss_pred eeecCCC--HHHHHHHh
Q 012319 402 SATIALS--ADFRKKLK 416 (466)
Q Consensus 402 SATl~~~--~~~~~~l~ 416 (466)
|||++.. .++..++.
T Consensus 181 SAT~~~~~~~~i~~~l~ 197 (523)
T 1oyw_A 181 TATADDTTRQDIVRLLG 197 (523)
T ss_dssp ESCCCHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHhC
Confidence 9999854 35566664
No 44
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.6e-24 Score=243.04 Aligned_cols=163 Identities=21% Similarity=0.274 Sum_probs=141.1
Q ss_pred HCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 012319 190 RLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 269 (466)
Q Consensus 190 ~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil 269 (466)
.++| .|+|+|.++|+.++.+. ++|++||||||||++|.++++..+. .+.++||+
T Consensus 82 ~~~f-~L~~~Q~eai~~l~~g~--~vLV~apTGSGKTlva~lai~~~l~-----------------------~g~rvL~l 135 (1010)
T 2xgj_A 82 TYPF-TLDPFQDTAISCIDRGE--SVLVSAHTSAGKTVVAEYAIAQSLK-----------------------NKQRVIYT 135 (1010)
T ss_dssp CCSS-CCCHHHHHHHHHHHHTC--EEEEECCTTSCHHHHHHHHHHHHHH-----------------------TTCEEEEE
T ss_pred hCCC-CCCHHHHHHHHHHHcCC--CEEEECCCCCChHHHHHHHHHHHhc-----------------------cCCeEEEE
Confidence 4667 49999999999986554 9999999999999999999988762 14589999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEeccc
Q 012319 270 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 349 (466)
Q Consensus 270 ~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEa 349 (466)
+||++|+.|+++.|..++. .++.++|+.... ..++|+|+||++|..++.++ ...+..+++||||||
T Consensus 136 ~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~---~~~l~~l~lVViDEa 201 (1010)
T 2xgj_A 136 SPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRG---SEVMREVAWVIFDEV 201 (1010)
T ss_dssp ESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHT---CTTGGGEEEEEEETG
T ss_pred CChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcC---cchhhcCCEEEEech
Confidence 9999999999999999875 577788887532 36899999999999988653 255789999999999
Q ss_pred chhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHh
Q 012319 350 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 416 (466)
Q Consensus 350 d~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~ 416 (466)
|+|.++++...+..++..++ ..+|+|+||||+++..+|..|+.
T Consensus 202 H~l~d~~rg~~~e~il~~l~------------------------~~~~il~LSATi~n~~e~a~~l~ 244 (1010)
T 2xgj_A 202 HYMRDKERGVVWEETIILLP------------------------DKVRYVFLSATIPNAMEFAEWIC 244 (1010)
T ss_dssp GGGGCTTTHHHHHHHHHHSC------------------------TTCEEEEEECCCTTHHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHhcC------------------------CCCeEEEEcCCCCCHHHHHHHHH
Confidence 99999999999999999987 67899999999999999999986
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.91 E-value=1.5e-24 Score=246.86 Aligned_cols=172 Identities=18% Similarity=0.167 Sum_probs=137.8
Q ss_pred HCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 012319 190 RLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 269 (466)
Q Consensus 190 ~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil 269 (466)
.+|| .|||+|.++||.++.++ |+|++||||||||++|+++++..+. .++++|||
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~--dvlv~ApTGSGKTl~~l~~il~~~~-----------------------~~~~~Lil 127 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGK--SFTMVAPTGVGKTTFGMMTALWLAR-----------------------KGKKSALV 127 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTC--CEEECCSTTCCHHHHHHHHHHHHHT-----------------------TTCCEEEE
T ss_pred hcCC-CCCHHHHHHHHHHHcCC--CEEEEeCCCCcHHHHHHHHHHHHHh-----------------------cCCeEEEE
Confidence 3788 69999999999997654 9999999999999988888777651 25689999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCH---HHHHHHHhcC-CcEEEeCcHHHHHHHhCCCCccccCCcccEEE
Q 012319 270 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMST---EKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFV 345 (466)
Q Consensus 270 ~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~---~~~~~~l~~~-~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lV 345 (466)
+|||+||.|+++.|..++ ..+++++.++||.+. ..+...+..+ ++||||||++|++++.. +.++++++||
T Consensus 128 ~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lV 201 (1104)
T 4ddu_A 128 FPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVF 201 (1104)
T ss_dssp ESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEE
T ss_pred echHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEE
Confidence 999999999999999977 778999999999987 5666667665 99999999999988752 6678999999
Q ss_pred ecccch----------hhc-cCCHHH-HHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 346 LDEADR----------MIE-NGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 346 iDEad~----------ll~-~g~~~~-l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
|||||+ |++ +||... +..++..++.. ... ........+|+++||||+.
T Consensus 202 iDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~-~~~------------~~~~~~~~~q~ll~SAT~~ 261 (1104)
T 4ddu_A 202 VDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQG-KIY------------ERPKNLKPGILVVSSATAK 261 (1104)
T ss_dssp ESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHT-SCC------------CCCSSCCCCEEEEECBSSC
T ss_pred EeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccc-hhh------------hhhccCCCceEEEEcCCCC
Confidence 999965 555 888888 88888877510 000 0000114689999999953
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.91 E-value=2.8e-24 Score=238.94 Aligned_cols=173 Identities=17% Similarity=0.189 Sum_probs=132.8
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|+..|+|+|.++|+.++.++ ++|+++|||||||++|++|++..+... ....+.++|||+
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~--~~ll~~~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~~~Lvl~ 303 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGK--NALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLA 303 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHhCC--CEEEEeCCCChHHHHHHHHHHHHHHhc------------------cccCCCeEEEEe
Confidence 678899999999999997654 999999999999999999999988531 122356899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccc
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 350 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad 350 (466)
||++|+.|+++.|..++...+++++.++|+.....+...+..+++|+|+||++|.+++..+. ...+..+++|||||||
T Consensus 304 Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEaH 381 (797)
T 4a2q_A 304 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECH 381 (797)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEETTGG
T ss_pred CCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhcc--ccccccCCEEEEECcc
Confidence 99999999999999999888899999999998777777777889999999999999997542 1257889999999999
Q ss_pred hhhccCCHHHHH-HHHHh-CCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 351 RMIENGHFRELQ-SIIDM-LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 351 ~ll~~g~~~~l~-~Il~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
++...+.+..+. .++.. +.. ....+|+|+||||+.
T Consensus 382 ~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 382 NTTGNHPYNVLMTRYLEQKFNS---------------------ASQLPQILGLTASVG 418 (797)
T ss_dssp GCSTTSHHHHHHHHHHHHHHTT---------------------CCCCCEEEEEESCCC
T ss_pred ccCCCccHHHHHHHHHHHhhcc---------------------CCCCCeEEEEcCCcc
Confidence 998665444432 22211 110 115689999999995
No 47
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=200.82 Aligned_cols=153 Identities=17% Similarity=0.156 Sum_probs=109.9
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
.....|+++|.++++.++.++ ++++++|||+|||++|+++++..+..... ...+.++|||+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~--~~li~~~tGsGKT~~~~~~~~~~~~~~~~-----------------~~~~~~~lil~ 89 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGK--NIIICLPTGSGKTRVAVYIAKDHLDKKKK-----------------ASEPGKVIVLV 89 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHH-----------------TTCCCCEEEEE
T ss_pred cCCCCchHHHHHHHHHHhcCC--CEEEEcCCCCCHHHHHHHHHHHHHhhccc-----------------ccCCCcEEEEE
Confidence 344589999999999997654 99999999999999999999988754321 12356899999
Q ss_pred CcHHHHHH-HHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCC---ccccCCcccEEEe
Q 012319 271 PTRELALQ-VTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK---HLVELHTLSFFVL 346 (466)
Q Consensus 271 PtreLa~Q-v~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~---~~~~l~~l~~lVi 346 (466)
||++|+.| +.+.+..+... ++.+..++|+.........+...++|+|+||++|..++..... ....+..+.+|||
T Consensus 90 p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIi 168 (216)
T 3b6e_A 90 NKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIII 168 (216)
T ss_dssp SSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEE
Confidence 99999999 77788887654 6788888887654443334445789999999999998865321 1245788999999
Q ss_pred cccchhhccCCHHHHHH
Q 012319 347 DEADRMIENGHFRELQS 363 (466)
Q Consensus 347 DEad~ll~~g~~~~l~~ 363 (466)
||||++++.+++..+..
T Consensus 169 DEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 169 DECHHTNKEAVYNNIMR 185 (216)
T ss_dssp TTC-------CHHHHHH
T ss_pred ECchhhccCCcHHHHHH
Confidence 99999987778777643
No 48
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.91 E-value=1.3e-24 Score=247.26 Aligned_cols=170 Identities=19% Similarity=0.254 Sum_probs=138.2
Q ss_pred HCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 012319 190 RLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 269 (466)
Q Consensus 190 ~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil 269 (466)
.+||. | |+|.++|+.++.++ |+|++||||||||+ |++|++.++.. .++++|||
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~--dvlv~apTGSGKTl-~~lp~l~~~~~----------------------~~~~~lil 105 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKE--SFAATAPTGVGKTS-FGLAMSLFLAL----------------------KGKRCYVI 105 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTC--CEECCCCBTSCSHH-HHHHHHHHHHT----------------------TSCCEEEE
T ss_pred hcCCC-H-HHHHHHHHHHHhCC--CEEEEcCCCCCHHH-HHHHHHHHHhh----------------------cCCeEEEE
Confidence 48998 9 99999999997654 99999999999998 99999988742 25689999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCc----EEEEEECCCCHHHH---HHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCccc
Q 012319 270 TPTRELALQVTDHLKEVAKGINV----RVVPIVGGMSTEKQ---ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 342 (466)
Q Consensus 270 ~PtreLa~Qv~~~l~~l~~~~~~----~v~~~~gg~~~~~~---~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~ 342 (466)
+|||+||.|+++.+..++...++ +++.++||.+...+ ...+.. ++|+||||++|++++.+ |+.++
T Consensus 106 ~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-------L~~l~ 177 (1054)
T 1gku_B 106 FPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-------LGHFD 177 (1054)
T ss_dssp ESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-------SCCCS
T ss_pred eccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-------hccCC
Confidence 99999999999999999988888 89999999987663 344455 99999999999988742 67999
Q ss_pred EEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCH
Q 012319 343 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 409 (466)
Q Consensus 343 ~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~ 409 (466)
+|||||||+|++ +...+..++..+...... ........+|+++||||++...
T Consensus 178 ~lViDEah~~l~--~~~~~~~i~~~lgf~~~~-------------~~~~~~~~~q~~l~SAT~t~~~ 229 (1054)
T 1gku_B 178 FIFVDDVDAILK--ASKNVDKLLHLLGFHYDL-------------KTKSWVGEARGCLMVSTATAKK 229 (1054)
T ss_dssp EEEESCHHHHHT--STHHHHHHHHHTTEEEET-------------TTTEEEECCSSEEEECCCCSCC
T ss_pred EEEEeChhhhhh--ccccHHHHHHHhCcchhh-------------hhhhcccCCceEEEEecCCCch
Confidence 999999999987 567888888877521100 0011124679999999998764
No 49
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.91 E-value=1.9e-24 Score=244.11 Aligned_cols=165 Identities=20% Similarity=0.274 Sum_probs=141.1
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
++| .|+++|.++|+.++.++ +++++||||||||++|+++++..+. .+.++|||+
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~--~vlv~apTGsGKTlv~~~~i~~~~~-----------------------~g~~vlvl~ 89 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGD--SVFVAAHTSAGKTVVAEYAIAMAHR-----------------------NMTKTIYTS 89 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTC--EEEEECCTTSCSHHHHHHHHHHHHH-----------------------TTCEEEEEE
T ss_pred CCC-CCCHHHHHHHHHHHcCC--CEEEEECCCCcHHHHHHHHHHHHHh-----------------------cCCeEEEEe
Confidence 566 58999999999996654 9999999999999999999887652 245899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccc
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 350 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad 350 (466)
||++|+.|+++.|..++. ++.++.++|+... ...++|+|+||++|..++..+ ...+..+.+|||||||
T Consensus 90 PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~---~~~l~~l~lvViDEaH 157 (997)
T 4a4z_A 90 PIKALSNQKFRDFKETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRG---ADLIRDVEFVIFDEVH 157 (997)
T ss_dssp SCGGGHHHHHHHHHTTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHT---CSGGGGEEEEEECCTT
T ss_pred CCHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhC---chhhcCCCEEEEECcc
Confidence 999999999999988653 6788889998753 345899999999999988653 2457899999999999
Q ss_pred hhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhh
Q 012319 351 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 417 (466)
Q Consensus 351 ~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~ 417 (466)
++.++++...+..++..++ ..+|+|+||||+++..+|..|+..
T Consensus 158 ~l~d~~~g~~~e~ii~~l~------------------------~~v~iIlLSAT~~n~~ef~~~l~~ 200 (997)
T 4a4z_A 158 YVNDQDRGVVWEEVIIMLP------------------------QHVKFILLSATVPNTYEFANWIGR 200 (997)
T ss_dssp CCCTTCTTCCHHHHHHHSC------------------------TTCEEEEEECCCTTHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHhcc------------------------cCCCEEEEcCCCCChHHHHHHHhc
Confidence 9999999988999999987 678999999999999999999863
No 50
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.90 E-value=5.7e-24 Score=230.25 Aligned_cols=150 Identities=18% Similarity=0.227 Sum_probs=113.4
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. .|+++|..++|.+ +.| + |+.++||||||++|+||++.+.+ .+++|+||+
T Consensus 71 lg~-~p~~VQ~~~i~~l-l~G--~-Iaem~TGsGKTlaf~LP~l~~~l-----------------------~g~~vlVlt 122 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVL-NER--C-IAEMRTGEGKTLTATLPAYLNAL-----------------------TGKGVHVVT 122 (853)
T ss_dssp HSC-CCCHHHHHHHHHH-HSS--E-EEECCTTSCHHHHHHHHHHHHHT-----------------------TSSCCEEEE
T ss_pred cCC-CCChHHHhhcccc-cCC--e-eeeecCCchHHHHHHHHHHHHHH-----------------------cCCcEEEEc
Confidence 675 8999999999988 455 5 89999999999999999986542 145799999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCCC---CccccCCcccEEEe
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVL 346 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~l~~lVi 346 (466)
|||+||.|+++.+..++..+++++++++||.+... +.+..++||+|||||+| .++|..+. .....++.+.++||
T Consensus 123 PTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 123 VNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALV 200 (853)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEE
Confidence 99999999999999999999999999999998643 34445799999999999 78775431 12355799999999
Q ss_pred cccchhh-cc---------------CCHHHHHHHHHhCCC
Q 012319 347 DEADRMI-EN---------------GHFRELQSIIDMLPM 370 (466)
Q Consensus 347 DEad~ll-~~---------------g~~~~l~~Il~~l~~ 370 (466)
||||+|| ++ +|+..+..|+..|+.
T Consensus 201 DEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 201 DEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp SCHHHHTTTTTTCEEEEEEC--------------------
T ss_pred CchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchh
Confidence 9999999 54 367888999988863
No 51
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=200.19 Aligned_cols=178 Identities=17% Similarity=0.184 Sum_probs=128.1
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCC
Q 012319 183 LLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 262 (466)
Q Consensus 183 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (466)
.+...+.......++++|.++++.+..++ +++++|+||||||.+|.+++++.+... ....
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~--~~~i~g~TGsGKTt~~~~~~~~~~~~~------------------~~~~ 108 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNS--VVIIRGATGCGKTTQVPQFILDDFIQN------------------DRAA 108 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCS--EEEEECCTTSSHHHHHHHHHHHHHHHT------------------TCGG
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC--EEEEEeCCCCCcHHhHHHHHhcchhhc------------------CCCC
Confidence 33333333334467999999999996554 999999999999999999998877532 1123
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHc-CCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcc
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL 341 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~-~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l 341 (466)
++++||++|||+|+.|+++.+..... ..+..++.-..... .....+++|+|||||+|++++.. .++++
T Consensus 109 ~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~------~l~~~ 177 (235)
T 3llm_A 109 ECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA------GIRGI 177 (235)
T ss_dssp GCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH------CCTTC
T ss_pred ceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh------hhcCC
Confidence 56899999999999999988876543 22333332221110 00114588999999999999853 38999
Q ss_pred cEEEecccchh-hccCCH-HHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHHHHhh
Q 012319 342 SFFVLDEADRM-IENGHF-RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 417 (466)
Q Consensus 342 ~~lViDEad~l-l~~g~~-~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~~l~~ 417 (466)
++|||||||++ +++++. ..+..++... ..+|+|+||||++... +.+++..
T Consensus 178 ~~lVlDEah~~~~~~~~~~~~l~~i~~~~-------------------------~~~~~il~SAT~~~~~-~~~~~~~ 229 (235)
T 3llm_A 178 SHVIVDEIHERDINTDFLLVVLRDVVQAY-------------------------PEVRIVLMSATIDTSM-FCEYFFN 229 (235)
T ss_dssp CEEEECCTTSCCHHHHHHHHHHHHHHHHC-------------------------TTSEEEEEECSSCCHH-HHHHTTS
T ss_pred cEEEEECCccCCcchHHHHHHHHHHHhhC-------------------------CCCeEEEEecCCCHHH-HHHHcCC
Confidence 99999999986 777776 4666666655 3589999999998554 7776643
No 52
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.89 E-value=2.6e-23 Score=234.37 Aligned_cols=174 Identities=17% Similarity=0.169 Sum_probs=130.9
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
.|+..|+|+|.++|+.++.++ ++|+++|||||||++|++|+++.+... ....+.++|||+
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~--~~ll~a~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~~vLvl~ 303 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGK--NALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLA 303 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHTTTTTC------------------CSSCCCCEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHcCC--CEEEEeCCCchHHHHHHHHHHHHHHhc------------------cccCCCeEEEEe
Confidence 567899999999999997654 999999999999999999999877321 112256899999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccc
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 350 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad 350 (466)
||++|+.|+++.|..++...++++..++|+.....+...+..+++|+|+||++|.+++..+. ...+..+++|||||||
T Consensus 304 Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~--~~~l~~~~liViDEaH 381 (936)
T 4a2w_A 304 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECH 381 (936)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEEETGG
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc--cccccCCCEEEEECcc
Confidence 99999999999999999888999999999987766666666789999999999999997542 2257889999999999
Q ss_pred hhhccCCHHHHH-HHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 351 RMIENGHFRELQ-SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 351 ~ll~~g~~~~l~-~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
++...+.+..+. .++..... .....+|+|+||||+.
T Consensus 382 ~~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 382 NTTGNHPYNVLMTRYLEQKFN--------------------SASQLPQILGLTASVG 418 (936)
T ss_dssp GCSTTCHHHHHHHHHHHHHHT--------------------TCSCCCEEEEEESCCC
T ss_pred ccCCCccHHHHHHHHHHHhhc--------------------cCCCcCeEEEecCCcc
Confidence 998665433332 22221100 0115689999999995
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.89 E-value=4.5e-23 Score=223.62 Aligned_cols=150 Identities=19% Similarity=0.317 Sum_probs=125.8
Q ss_pred HCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 012319 190 RLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 269 (466)
Q Consensus 190 ~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil 269 (466)
.+|+ +|+++|..++|.+ +.| . |+.++||+|||++|+||++...+. +.+|+||
T Consensus 107 ~lG~-rP~~VQ~~~ip~L-l~G--~-Iaem~TGeGKTLa~~LP~~l~aL~-----------------------g~~v~Vv 158 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAAL-HLG--N-VAEMKTGEGKTLTCVLPAYLNALA-----------------------GNGVHIV 158 (922)
T ss_dssp HHSC-CCCHHHHHHHHHH-HTT--E-EEECCTTSCHHHHTHHHHHHHHTT-----------------------TSCEEEE
T ss_pred HcCC-CCCHHHHHHHHhH-hcC--C-EEEecCCCccHHHHHHHHHHHHHh-----------------------CCCeEEE
Confidence 3788 9999999999998 455 4 999999999999999999755431 3479999
Q ss_pred eCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCCC---CccccCCcccEEE
Q 012319 270 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFV 345 (466)
Q Consensus 270 ~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~l~~lV 345 (466)
+||++||.|+++.+..++..+++++++++||.+.... ....++||+||||++| .++|.... .....++.+.++|
T Consensus 159 TpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lI 236 (922)
T 1nkt_A 159 TVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAI 236 (922)
T ss_dssp ESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEE
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEE
Confidence 9999999999999999999999999999999986433 3344699999999999 77775431 1235678999999
Q ss_pred ecccchhh-c---------------cCCHHHHHHHHHhCC
Q 012319 346 LDEADRMI-E---------------NGHFRELQSIIDMLP 369 (466)
Q Consensus 346 iDEad~ll-~---------------~g~~~~l~~Il~~l~ 369 (466)
|||||+|| | ++|+..+..|+..|+
T Consensus 237 VDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~ 276 (922)
T 1nkt_A 237 VDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLME 276 (922)
T ss_dssp ETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSC
T ss_pred EeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCc
Confidence 99999998 4 368899999999996
No 54
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=1.4e-22 Score=197.95 Aligned_cols=154 Identities=22% Similarity=0.176 Sum_probs=121.6
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.|+++|.++++.++.++ +.++++|||+|||+++++++...+.. +..++|||+||++
T Consensus 113 ~l~~~Q~~ai~~~l~~~--~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------~~~~~lil~Pt~~ 168 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNR--RRILNLPTSAGRSLIQALLARYYLEN----------------------YEGKILIIVPTTA 168 (282)
T ss_dssp CCCHHHHHHHHHHHHHS--EEEECCCTTSCHHHHHHHHHHHHHHH----------------------CSSEEEEECSSHH
T ss_pred CccHHHHHHHHHHHhcC--CeEEEcCCCCCcHHHHHHHHHHHHHc----------------------CCCeEEEEECCHH
Confidence 79999999999997775 78889999999999998887766531 1237999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhc
Q 012319 275 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 354 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~ 354 (466)
|+.|+++.+..+.......+..++||..... ......+|+|+||+.|.... ...+..+.+|||||||++..
T Consensus 169 L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~------~~~~~~~~~vIiDEaH~~~~ 239 (282)
T 1rif_A 169 LTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP------KEWFSQFGMMMNDECHLATG 239 (282)
T ss_dssp HHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC------GGGGGGEEEEEEETGGGCCH
T ss_pred HHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH------HHHHhhCCEEEEECCccCCc
Confidence 9999999999987666677888888765422 22256899999999875432 13467889999999999963
Q ss_pred cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCCH
Q 012319 355 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 409 (466)
Q Consensus 355 ~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~ 409 (466)
..+..++..+. ..+|+|+||||+++..
T Consensus 240 ----~~~~~il~~~~------------------------~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 240 ----KSISSIISGLN------------------------NCMFKFGLSGSLRDGK 266 (282)
T ss_dssp ----HHHHHHTTTCT------------------------TCCEEEEECSSCCTTS
T ss_pred ----ccHHHHHHHhh------------------------cCCeEEEEeCCCCCcc
Confidence 36666776664 4689999999998654
No 55
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.87 E-value=1.6e-22 Score=221.43 Aligned_cols=147 Identities=17% Similarity=0.185 Sum_probs=114.6
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.|+|+|.++|+.++.++ ++|+++|||+|||++|++|++..+...+.. ..+.++|||+||++
T Consensus 7 ~l~~~Q~~~i~~il~g~--~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----------------~~~~~vlvl~P~~~ 67 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGK--NIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----------------SEPGKVIVLVNKVL 67 (699)
T ss_dssp CCCHHHHHHHHHHHSSC--CEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----------------TCCCCBCCEESCSH
T ss_pred CccHHHHHHHHHHHhCC--CEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----------------CCCCeEEEEECCHH
Confidence 79999999999997654 999999999999999999999998765321 12357999999999
Q ss_pred HHHHH-HHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCC---CccccCCcccEEEecccc
Q 012319 275 LALQV-TDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE---KHLVELHTLSFFVLDEAD 350 (466)
Q Consensus 275 La~Qv-~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~---~~~~~l~~l~~lViDEad 350 (466)
|+.|+ ++.|..++.. ++++..++|+.........+...++|||+||++|.+++.+.. .....+..+++|||||||
T Consensus 68 L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH 146 (699)
T 4gl2_A 68 LVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH 146 (699)
T ss_dssp HHHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGG
T ss_pred HHHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECcc
Confidence 99999 9999999865 488999999987665556666789999999999999884321 223567889999999999
Q ss_pred hhhccCCHHHH
Q 012319 351 RMIENGHFREL 361 (466)
Q Consensus 351 ~ll~~g~~~~l 361 (466)
++...+++..+
T Consensus 147 ~~~~~~~~~~i 157 (699)
T 4gl2_A 147 HTNKEAVYNNI 157 (699)
T ss_dssp GCBTTBSSCSH
T ss_pred ccCccchHHHH
Confidence 98755544333
No 56
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.86 E-value=4.7e-21 Score=198.31 Aligned_cols=161 Identities=22% Similarity=0.286 Sum_probs=131.0
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.|+|+|.++++.++. + ++|+++|||+|||++|+++++..+.. .+.++|||+||++
T Consensus 9 ~l~~~Q~~~i~~~~~-~--~~ll~~~tG~GKT~~~~~~~~~~~~~----------------------~~~~~liv~P~~~ 63 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE-T--NCLIVLPTGLGKTLIAMMIAEYRLTK----------------------YGGKVLMLAPTKP 63 (494)
T ss_dssp CCCHHHHHHHHHGGG-S--CEEEECCTTSCHHHHHHHHHHHHHHH----------------------SCSCEEEECSSHH
T ss_pred CccHHHHHHHHHHhh-C--CEEEEcCCCCCHHHHHHHHHHHHHhc----------------------CCCeEEEEECCHH
Confidence 699999999999854 4 89999999999999999999887741 2457999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhc
Q 012319 275 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 354 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~ 354 (466)
|+.|+++.+..++......+..++|+........ ....++|+|+||+.|...+..+ ...+..+.+|||||||++.+
T Consensus 64 L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~---~~~~~~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 64 LVLQHAESFRRLFNLPPEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAG---RISLEDVSLIVFDEAHRAVG 139 (494)
T ss_dssp HHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTT---SCCTTSCSEEEEETGGGCST
T ss_pred HHHHHHHHHHHHhCcchhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcC---CcchhhceEEEEECCcccCC
Confidence 9999999999987544558888999988765433 3346899999999999988653 35678899999999999986
Q ss_pred cCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 355 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 355 ~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
...+..+..++.... ..+++++||||+.+.
T Consensus 140 ~~~~~~~~~~~~~~~------------------------~~~~~l~lTaTp~~~ 169 (494)
T 1wp9_A 140 NYAYVFIAREYKRQA------------------------KNPLVIGLTASPGST 169 (494)
T ss_dssp TCHHHHHHHHHHHHC------------------------SSCCEEEEESCSCSS
T ss_pred CCcHHHHHHHHHhcC------------------------CCCeEEEEecCCCCC
Confidence 656666666655443 467999999999854
No 57
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.86 E-value=2.6e-21 Score=212.60 Aligned_cols=138 Identities=25% Similarity=0.373 Sum_probs=114.7
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHhc----CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 012319 183 LLMKSIYRLGFKEPTPIQKACIPAAAHQ----GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 258 (466)
Q Consensus 183 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~~----~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 258 (466)
.+...+..++| .||++|.++|+.++.+ ...+++++|+||||||++|++|++..+..
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------------- 416 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------------- 416 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-------------------
Confidence 44445577999 9999999999998764 11289999999999999999999988732
Q ss_pred CCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHH---Hh-cCCcEEEeCcHHHHHHHhCCCCc
Q 012319 259 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LK-ARPELVVGTPGRLWELMSGGEKH 334 (466)
Q Consensus 259 ~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~---l~-~~~dIiV~TP~~L~~~l~~~~~~ 334 (466)
+.++|||+||++||.|+++.+..++...++++..++|+......... +. ..++|+||||+.|.+.
T Consensus 417 ----g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~------- 485 (780)
T 1gm5_A 417 ----GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED------- 485 (780)
T ss_dssp ----TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC-------
T ss_pred ----CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh-------
Confidence 35899999999999999999999998889999999999987654332 33 3599999999987542
Q ss_pred cccCCcccEEEecccchh
Q 012319 335 LVELHTLSFFVLDEADRM 352 (466)
Q Consensus 335 ~~~l~~l~~lViDEad~l 352 (466)
..+.++.+|||||||++
T Consensus 486 -~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 486 -VHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp -CCCSCCCEEEEESCCCC
T ss_pred -hhccCCceEEecccchh
Confidence 45789999999999986
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.84 E-value=4.7e-21 Score=202.12 Aligned_cols=154 Identities=22% Similarity=0.183 Sum_probs=125.1
Q ss_pred CCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 012319 194 KEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 273 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 273 (466)
..|+|+|.++++.++.++ +++++++||+|||++|+++++..+.. ...++|||+||+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~--~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------~~~~vlvl~P~~ 167 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNR--RRILNLPTSAGRSLIQALLARYYLEN----------------------YEGKILIIVPTT 167 (510)
T ss_dssp ECCCHHHHHHHHHHHHHS--EEEEECCSTTTHHHHHHHHHHHHHHH----------------------CSSEEEEEESSH
T ss_pred CCCCHHHHHHHHHHHhcC--CcEEEeCCCCCHHHHHHHHHHHHHhC----------------------CCCeEEEEECcH
Confidence 389999999999997765 99999999999999999988877631 124899999999
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhh
Q 012319 274 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 274 eLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll 353 (466)
+|+.|+++.|..+....++.+..++|+.....+ +...++|+|+||+.|... ....+..+.+|||||||++.
T Consensus 168 ~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~------~~~~~~~~~liIiDE~H~~~ 238 (510)
T 2oca_A 168 ALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ------PKEWFSQFGMMMNDECHLAT 238 (510)
T ss_dssp HHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS------CGGGGGGEEEEEEETGGGCC
T ss_pred HHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc------hhhhhhcCCEEEEECCcCCC
Confidence 999999999998866666788888888766443 456789999999976432 12457789999999999986
Q ss_pred ccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 354 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 354 ~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
. ..+..++..++ ..+++|+||||+++.
T Consensus 239 ~----~~~~~il~~~~------------------------~~~~~l~lSATp~~~ 265 (510)
T 2oca_A 239 G----KSISSIISGLN------------------------NCMFKFGLSGSLRDG 265 (510)
T ss_dssp H----HHHHHHGGGCT------------------------TCCEEEEEESCGGGC
T ss_pred c----ccHHHHHHhcc------------------------cCcEEEEEEeCCCCC
Confidence 4 45677777765 467999999999754
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.83 E-value=1.1e-21 Score=204.39 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=111.5
Q ss_pred CCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 192 GFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 192 g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
|+..|+|+|+ +||.++.++. .+|++||||||||++|++|++.+++.. ++++|||+|
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~-~~lv~a~TGsGKT~~~~~~~l~~~~~~----------------------~~~~lvl~P 56 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKR-LTIMDLHPGAGKTKRILPSIVREALLR----------------------RLRTLILAP 56 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTC-EEEECCCTTSSCCTTHHHHHHHHHHHT----------------------TCCEEEEES
T ss_pred CCCCCCCcHH-HHHHHHhcCC-eEEEECCCCCCHhhHHHHHHHHHHHhc----------------------CCcEEEECC
Confidence 7889999986 7999977764 559999999999999999999887531 468999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ 351 (466)
||+||.|+++.+. ++.+....+.... ....+..|.|+|++.|.+.+.+. ..++++++|||||||+
T Consensus 57 tr~La~Q~~~~l~------g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~ 121 (451)
T 2jlq_A 57 TRVVAAEMEEALR------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHF 121 (451)
T ss_dssp SHHHHHHHHHHTT------TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTC
T ss_pred CHHHHHHHHHHhc------Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCcc
Confidence 9999999999885 2333222211110 11235679999999998887543 4588999999999997
Q ss_pred hhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 352 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 352 ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
+ +.++...+..+..... ...+|+|+||||++.
T Consensus 122 ~-~~~~~~~~~~~~~~~~-----------------------~~~~~~i~~SAT~~~ 153 (451)
T 2jlq_A 122 T-DPCSVAARGYISTRVE-----------------------MGEAAAIFMTATPPG 153 (451)
T ss_dssp C-SHHHHHHHHHHHHHHH-----------------------TTSCEEEEECSSCTT
T ss_pred C-CcchHHHHHHHHHhhc-----------------------CCCceEEEEccCCCc
Confidence 7 4444333333332211 146899999999974
No 60
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.83 E-value=4.2e-20 Score=199.89 Aligned_cols=133 Identities=22% Similarity=0.297 Sum_probs=111.9
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|+ .||++|..++|.+ +.| + |++++||||||++|++|++...+ .+.+|+||+
T Consensus 76 lG~-~Pt~VQ~~~ip~L-lqG--~-IaeakTGeGKTLvf~Lp~~L~aL-----------------------~G~qv~VvT 127 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVL-HEG--K-IAEMKTGEGKTLVATLAVALNAL-----------------------TGKGVHVVT 127 (997)
T ss_dssp TCC-CCCHHHHHHHHHH-HTT--S-EEECCSTHHHHHHHHHHHHHHHT-----------------------TCSCCEEEE
T ss_pred hCC-CCcHHHHhhcccc-cCC--c-eeeccCCCchHHHHHHHHHHHHH-----------------------hCCCEEEEe
Confidence 899 9999999999998 455 4 89999999999999999965442 134799999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHH-HHHHhCCC---CccccCC---cccE
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELH---TLSF 343 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~---~l~~ 343 (466)
||++||.|++..+..++..+++++++++||.+... +....++||+||||++| +++|..+. .....++ .+.+
T Consensus 128 PTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~ 205 (997)
T 2ipc_A 128 VNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHY 205 (997)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcce
Confidence 99999999999999999999999999999998543 33445799999999999 88886532 1124577 8999
Q ss_pred EEecccchhh
Q 012319 344 FVLDEADRMI 353 (466)
Q Consensus 344 lViDEad~ll 353 (466)
+||||||+||
T Consensus 206 lIIDEaDsmL 215 (997)
T 2ipc_A 206 AIIDEVDSIL 215 (997)
T ss_dssp EEETTHHHHT
T ss_pred EEEechHHHH
Confidence 9999999987
No 61
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.81 E-value=4.5e-19 Score=203.10 Aligned_cols=168 Identities=21% Similarity=0.245 Sum_probs=130.4
Q ss_pred CCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHHh----cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012319 178 LRLHPLLMKSIY-RLGFKEPTPIQKACIPAAAH----QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 252 (466)
Q Consensus 178 l~l~~~l~~~l~-~~g~~~pt~iQ~~~i~~~l~----~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 252 (466)
+.++..+.+.+. .++| .|||+|.++|+.++. ++..|+|++++||+|||++|+++++..+.
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-------------- 650 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-------------- 650 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------------
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------------
Confidence 455666666664 4777 579999999999976 33238999999999999999999887652
Q ss_pred hhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHH---Hh-cCCcEEEeCcHHHHHHH
Q 012319 253 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LK-ARPELVVGTPGRLWELM 328 (466)
Q Consensus 253 ~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~---l~-~~~dIiV~TP~~L~~~l 328 (466)
.+.++|||+||++||.|+++.|..++...++++..++|..+....... +. ..++|+||||+.|.
T Consensus 651 ---------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~--- 718 (1151)
T 2eyq_A 651 ---------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ--- 718 (1151)
T ss_dssp ---------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH---
T ss_pred ---------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh---
Confidence 245899999999999999999999888888899999888776554333 33 35999999997663
Q ss_pred hCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 329 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 329 ~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
. ...+.++.+|||||||++. .....++..++ ..+|+|+||||+.
T Consensus 719 -~----~~~~~~l~lvIiDEaH~~g-----~~~~~~l~~l~------------------------~~~~vl~lSATp~ 762 (1151)
T 2eyq_A 719 -S----DVKFKDLGLLIVDEEHRFG-----VRHKERIKAMR------------------------ANVDILTLTATPI 762 (1151)
T ss_dssp -S----CCCCSSEEEEEEESGGGSC-----HHHHHHHHHHH------------------------TTSEEEEEESSCC
T ss_pred -C----CccccccceEEEechHhcC-----hHHHHHHHHhc------------------------CCCCEEEEcCCCC
Confidence 2 1457899999999999953 23344555554 5689999999986
No 62
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.80 E-value=2.7e-21 Score=208.27 Aligned_cols=167 Identities=17% Similarity=0.133 Sum_probs=118.6
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 012319 178 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 257 (466)
Q Consensus 178 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 257 (466)
+++++.+++++... ...|+|+|+++++.++ .++ |+|++||||||||++|++|+++.++.
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~-~g~-dvlv~a~TGSGKT~~~~lpil~~l~~------------------ 213 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFR-KKR-LTIMDLHPGAGKTKRILPSIVREALK------------------ 213 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGS-TTC-EEEECCCTTSSTTTTHHHHHHHHHHH------------------
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHh-cCC-eEEEEcCCCCCHHHHHHHHHHHHHHh------------------
Confidence 45566655555433 5789999988888774 444 99999999999999999999999853
Q ss_pred cCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCcccc
Q 012319 258 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 337 (466)
Q Consensus 258 ~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~ 337 (466)
.++++|||+|||+||.|+++.|.. +.+. +.+..-. .....+..|.++|.+.|...+... ..
T Consensus 214 ----~~~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~----~~ 274 (618)
T 2whx_A 214 ----RRLRTLILAPTRVVAAEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS----TR 274 (618)
T ss_dssp ----TTCCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC----SS
T ss_pred ----CCCeEEEEcChHHHHHHHHHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhcc----cc
Confidence 146899999999999999988862 2332 2221100 001123457778888877665432 44
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
++++++|||||||++ ++++...+..|+..++. ..+|+|+||||++..
T Consensus 275 l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~-----------------------~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 275 VPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM-----------------------GEAAAIFMTATPPGS 321 (618)
T ss_dssp CCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH-----------------------TSCEEEEECSSCTTC
T ss_pred ccCCeEEEEECCCCC-CccHHHHHHHHHHHhcc-----------------------cCccEEEEECCCchh
Confidence 899999999999998 68888888888877641 468999999999754
No 63
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.80 E-value=3.3e-19 Score=196.65 Aligned_cols=190 Identities=17% Similarity=0.211 Sum_probs=135.6
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhh
Q 012319 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 249 (466)
Q Consensus 170 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~ 249 (466)
.+...|.++++++.+.+.+...+ ..|+++|+++|+.++.++. +++++||||||||+ ++|++ ++...
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~-~vii~gpTGSGKTt--llp~l--l~~~~-------- 134 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQ-IMVFVGETGSGKTT--QIPQF--VLFDE-------- 134 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCS-EEEEECCTTSSHHH--HHHHH--HHHHH--------
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCC-eEEEECCCCCCHHH--HHHHH--HHHhc--------
Confidence 35678999999999999999888 7899999999999988876 89999999999999 56665 22110
Q ss_pred hhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc-CCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHH
Q 012319 250 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 328 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~-~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l 328 (466)
.....+.+++|++|+|+||.|++..+..... ..+..++...... ......++|+|+|||+|.+++
T Consensus 135 --------~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~------~~~~~~~~I~v~T~G~l~r~l 200 (773)
T 2xau_A 135 --------MPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE------NKTSNKTILKYMTDGMLLREA 200 (773)
T ss_dssp --------CGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE------EECCTTCSEEEEEHHHHHHHH
T ss_pred --------cccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccc------cccCCCCCEEEECHHHHHHHH
Confidence 0111246899999999999999987765432 1122222111110 011246899999999999877
Q ss_pred hCCCCccccCCcccEEEecccch-hhccCC-HHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 329 SGGEKHLVELHTLSFFVLDEADR-MIENGH-FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 329 ~~~~~~~~~l~~l~~lViDEad~-ll~~g~-~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
... ..+..+++|||||||. +++..+ ...+..|+... ...|+|+||||+.
T Consensus 201 ~~~----~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-------------------------~~~~iIl~SAT~~ 251 (773)
T 2xau_A 201 MED----HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-------------------------PDLKIIIMSATLD 251 (773)
T ss_dssp HHS----TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-------------------------TTCEEEEEESCSC
T ss_pred hhC----ccccCCCEEEecCccccccchHHHHHHHHHHHHhC-------------------------CCceEEEEecccc
Confidence 543 4589999999999995 665332 23333444333 3579999999994
Q ss_pred CCHHHHHHHhh
Q 012319 407 LSADFRKKLKH 417 (466)
Q Consensus 407 ~~~~~~~~l~~ 417 (466)
...+..++..
T Consensus 252 -~~~l~~~~~~ 261 (773)
T 2xau_A 252 -AEKFQRYFND 261 (773)
T ss_dssp -CHHHHHHTTS
T ss_pred -HHHHHHHhcC
Confidence 6777777753
No 64
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.79 E-value=5.3e-19 Score=184.61 Aligned_cols=137 Identities=20% Similarity=0.129 Sum_probs=111.3
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.|+|+|.++++.++.++ +++++++||+|||++|++++... +.++|||+||++
T Consensus 93 ~l~~~Q~~ai~~i~~~~--~~ll~~~TGsGKT~~~l~~i~~~--------------------------~~~~Lvl~P~~~ 144 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDK--RGCIVLPTGSGKTHVAMAAINEL--------------------------STPTLIVVPTLA 144 (472)
T ss_dssp CBCHHHHHHHHHHTTTT--EEEEECCTTSCHHHHHHHHHHHH--------------------------CSCEEEEESSHH
T ss_pred CcCHHHHHHHHHHHhcC--CEEEEeCCCCCHHHHHHHHHHHc--------------------------CCCEEEEECCHH
Confidence 79999999999986654 89999999999999999887642 237999999999
Q ss_pred HHHHHHHHHHHHHcCCCcE-EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhh
Q 012319 275 LALQVTDHLKEVAKGINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~~~~-v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll 353 (466)
|+.|+++.|..+ ++. ++.++|+.. ..++|+|+||+.|...+.. ....+.+|||||||++.
T Consensus 145 L~~Q~~~~~~~~----~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~------~~~~~~liIvDEaH~~~ 205 (472)
T 2fwr_A 145 LAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLP 205 (472)
T ss_dssp HHHHHHHHGGGG----CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH------HTTTCSEEEEETGGGTT
T ss_pred HHHHHHHHHHhC----CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH------hcCCCCEEEEECCcCCC
Confidence 999999999884 677 888887754 3579999999999876631 12468999999999998
Q ss_pred ccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 354 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 354 ~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
..++.. ++..++ ..++|+||||+..
T Consensus 206 ~~~~~~----~~~~~~-------------------------~~~~l~lSATp~~ 230 (472)
T 2fwr_A 206 AESYVQ----IAQMSI-------------------------APFRLGLTATFER 230 (472)
T ss_dssp STTTHH----HHHTCC-------------------------CSEEEEEESCCCC
T ss_pred ChHHHH----HHHhcC-------------------------CCeEEEEecCccC
Confidence 776643 555553 4689999999973
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.79 E-value=2.7e-20 Score=199.96 Aligned_cols=147 Identities=15% Similarity=0.165 Sum_probs=112.2
Q ss_pred CcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 012319 196 PTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 275 (466)
Q Consensus 196 pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreL 275 (466)
|...|++.|+.++.+++ +++++||||||||++|.+|+++. +.++|||+|||+|
T Consensus 217 P~~~~q~~i~~~L~~~~-~vlv~ApTGSGKT~a~~l~ll~~--------------------------g~~vLVl~PTReL 269 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQ-VAHLHAPTGSGKSTKVPAAYAAQ--------------------------GYKVLVLNPSVAA 269 (666)
T ss_dssp CSCCCCCSCCCCCSSCE-EEEEECCTTSCTTTHHHHHHHHT--------------------------TCCEEEEESCHHH
T ss_pred CcHHHHHHHHHHHHcCC-eEEEEeCCchhHHHHHHHHHHHC--------------------------CCeEEEEcchHHH
Confidence 33344455555556666 99999999999999999988752 3479999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhcc
Q 012319 276 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 355 (466)
Q Consensus 276 a~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~ 355 (466)
|.|+++.+.... +..+...+|+.. +..+++|+|+|||+|+ .. ..+.++++++|||||||. +++
T Consensus 270 A~Qia~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~---~~l~l~~l~~lVlDEAH~-l~~ 332 (666)
T 3o8b_A 270 TLGFGAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKFL---AD---GGCSGGAYDIIICDECHS-TDS 332 (666)
T ss_dssp HHHHHHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHHH---HT---TSCCTTSCSEEEETTTTC-CSH
T ss_pred HHHHHHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHHH---hC---CCcccCcccEEEEccchh-cCc
Confidence 999999887654 455666777754 4567999999999983 22 236688899999999964 568
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 356 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 356 g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
+|...+..|++.++.. ....+++||||++..
T Consensus 333 ~~~~~l~~Il~~l~~~----------------------~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 333 TTILGIGTVLDQAETA----------------------GARLVVLATATPPGS 363 (666)
T ss_dssp HHHHHHHHHHHHTTTT----------------------TCSEEEEEESSCTTC
T ss_pred cHHHHHHHHHHhhhhc----------------------CCceEEEECCCCCcc
Confidence 8888899999998721 123378889999853
No 66
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=1.9e-18 Score=164.51 Aligned_cols=139 Identities=20% Similarity=0.114 Sum_probs=108.0
Q ss_pred CCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 012319 194 KEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 273 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 273 (466)
..|+++|.+++..++.++ ++++++|||+|||++++.++... +.++||++||+
T Consensus 92 ~~l~~~Q~~ai~~~~~~~--~~ll~~~tG~GKT~~a~~~~~~~--------------------------~~~~liv~P~~ 143 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDK--RGCIVLPTGSGKTHVAMAAINEL--------------------------STPTLIVVPTL 143 (237)
T ss_dssp CCCCHHHHHHHHHHTTTS--EEEEEESSSTTHHHHHHHHHHHS--------------------------CSCEEEEESSH
T ss_pred CCcCHHHHHHHHHHHhCC--CEEEEeCCCCCHHHHHHHHHHHc--------------------------CCCEEEEeCCH
Confidence 379999999999986654 89999999999999998776532 23699999999
Q ss_pred HHHHHHHHHHHHHHcCCCcE-EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchh
Q 012319 274 ELALQVTDHLKEVAKGINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352 (466)
Q Consensus 274 eLa~Qv~~~l~~l~~~~~~~-v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~l 352 (466)
+|+.|+.+.+..+ ++. +..+.|+.. ...+|+|+||+.|...+. .....+.+|||||||++
T Consensus 144 ~L~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~------~~~~~~~llIiDEaH~l 204 (237)
T 2fz4_A 144 ALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAE------KLGNRFMLLIFDEVHHL 204 (237)
T ss_dssp HHHHHHHHHHGGG----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHH------HHTTTCSEEEEECSSCC
T ss_pred HHHHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHH------HhcccCCEEEEECCccC
Confidence 9999999998873 667 777777653 357999999999876553 11356899999999999
Q ss_pred hccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 353 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 353 l~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
.+..+ ..++..++ ..++|+||||+...
T Consensus 205 ~~~~~----~~i~~~~~-------------------------~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 205 PAESY----VQIAQMSI-------------------------APFRLGLTATFERE 231 (237)
T ss_dssp CTTTH----HHHHHTCC-------------------------CSEEEEEEESCC--
T ss_pred CChHH----HHHHHhcc-------------------------CCEEEEEecCCCCC
Confidence 76543 33555553 46899999999743
No 67
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.74 E-value=1.5e-18 Score=180.98 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=96.1
Q ss_pred HHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHH
Q 012319 205 PAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 284 (466)
Q Consensus 205 ~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~ 284 (466)
+.++..++ ++|++||||||||++|++|+++.++.. ++++|||+|||+||.|+++.+.
T Consensus 15 ~~~l~~~~-~vlv~a~TGsGKT~~~~l~il~~~~~~----------------------~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 15 PNMLRKRQ-MTVLDLHPGSGKTRKILPQIIKDAIQQ----------------------RLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp CGGGSTTC-EEEECCCTTSCTTTTHHHHHHHHHHHT----------------------TCCEEEEECSHHHHHHHHHHTT
T ss_pred HHHHhcCC-cEEEECCCCCCHHHHHHHHHHHHHHhC----------------------CCcEEEECchHHHHHHHHHHhc
Confidence 45556666 999999999999999999999988531 4689999999999999999886
Q ss_pred HHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch-----hhccCCHH
Q 012319 285 EVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-----MIENGHFR 359 (466)
Q Consensus 285 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~-----ll~~g~~~ 359 (466)
++.+....+.... .-..+.-|.++|.+.|...+... ..++++++|||||||+ ++..++..
T Consensus 72 ------g~~v~~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~~ 136 (459)
T 2z83_A 72 ------GLPVRYQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYIA 136 (459)
T ss_dssp ------TSCEEECC-------------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHHH
T ss_pred ------CceEeEEeccccc-----CCCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHHH
Confidence 2233222211111 01234567889999887766543 4588999999999998 44444432
Q ss_pred HHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 360 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 360 ~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
.+. . + ..+|+|+||||++..
T Consensus 137 ~~~----~-~------------------------~~~~~il~SAT~~~~ 156 (459)
T 2z83_A 137 TKV----E-L------------------------GEAAAIFMTATPPGT 156 (459)
T ss_dssp HHH----H-T------------------------TSCEEEEECSSCTTC
T ss_pred HHh----c-c------------------------CCccEEEEEcCCCcc
Confidence 221 1 1 468999999999854
No 68
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.72 E-value=7.6e-19 Score=182.24 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=92.1
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 288 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~ 288 (466)
..++ |+|++||||||||++|++|+++.+... ++++|||+|||+||.|+++.+..+
T Consensus 6 ~~g~-~vlv~a~TGSGKT~~~l~~~l~~~~~~----------------------~~~~lil~Ptr~La~Q~~~~l~~~-- 60 (440)
T 1yks_A 6 KKGM-TTVLDFHPGAGKTRRFLPQILAECARR----------------------RLRTLVLAPTRVVLSEMKEAFHGL-- 60 (440)
T ss_dssp STTC-EEEECCCTTSSTTTTHHHHHHHHHHHT----------------------TCCEEEEESSHHHHHHHHHHTTTS--
T ss_pred hCCC-CEEEEcCCCCCHHHHHHHHHHHHHHhc----------------------CCeEEEEcchHHHHHHHHHHHhcC--
Confidence 4455 999999999999999999999987531 468999999999999999988743
Q ss_pred CCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCC-----CccccCCcccEEEecccchhhccCCHHHHHH
Q 012319 289 GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-----KHLVELHTLSFFVLDEADRMIENGHFRELQS 363 (466)
Q Consensus 289 ~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~-----~~~~~l~~l~~lViDEad~ll~~g~~~~l~~ 363 (466)
++. ...+.. -+|+||+++++++..+. .....++++.+|||||||++ +.++...+..
T Consensus 61 --~v~--~~~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~ 121 (440)
T 1yks_A 61 --DVK--FHTQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGW 121 (440)
T ss_dssp --CEE--EESSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHH
T ss_pred --CeE--Eecccc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHH
Confidence 222 111110 04888877764443210 01134789999999999998 4444444444
Q ss_pred HHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 364 IIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 364 Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
+...+. ...+|+|+||||++..
T Consensus 122 ~~~~~~-----------------------~~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 122 AAHRAR-----------------------ANESATILMTATPPGT 143 (440)
T ss_dssp HHHHHH-----------------------TTSCEEEEECSSCTTC
T ss_pred HHHHhc-----------------------cCCceEEEEeCCCCch
Confidence 433332 1468999999999643
No 69
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.72 E-value=2.5e-19 Score=194.34 Aligned_cols=155 Identities=18% Similarity=0.270 Sum_probs=101.7
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHH-----hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012319 187 SIYRLGFK-----EPTPIQK-----ACIPAAA-----HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 251 (466)
Q Consensus 187 ~l~~~g~~-----~pt~iQ~-----~~i~~~l-----~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 251 (466)
+++..||. .||+||+ ++||.++ ..++ |+|++||||||||++|++|+++.+..
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~-dvlv~apTGSGKTl~~ll~il~~l~~------------ 268 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQ-LTVLDLHPGAGKTRRILPQIIKDAIQ------------ 268 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTC-EEEECCCTTTTTTTTHHHHHHHHHHH------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHh------------
Confidence 45556776 8999999 9999876 1444 99999999999999999999998753
Q ss_pred hhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCC
Q 012319 252 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 331 (466)
Q Consensus 252 ~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~ 331 (466)
.++++|||+|||+||.|+++.|..+ ++.. ..+. +. .++||+++++++..+
T Consensus 269 ----------~~~~~lilaPTr~La~Q~~~~l~~~----~i~~--~~~~---------l~-----~v~tp~~ll~~l~~~ 318 (673)
T 2wv9_A 269 ----------KRLRTAVLAPTRVVAAEMAEALRGL----PVRY--LTPA---------VQ-----REHSGNEIVDVMCHA 318 (673)
T ss_dssp ----------TTCCEEEEESSHHHHHHHHHHTTTS----CCEE--CCC-----------------CCCCSCCCEEEEEHH
T ss_pred ----------CCCcEEEEccHHHHHHHHHHHHhcC----Ceee--eccc---------cc-----ccCCHHHHHHHHHhh
Confidence 1468999999999999999988744 2221 1110 00 145555443222111
Q ss_pred C-----CccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 332 E-----KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 332 ~-----~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
. .....++++.+|||||||++ +..+...+..+...++. ..+|+|+||||++
T Consensus 319 ~l~~~l~~~~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-----------------------~~~~vl~~SAT~~ 374 (673)
T 2wv9_A 319 TLTHRLMSPLRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-----------------------GEAAAIFMTATPP 374 (673)
T ss_dssp HHHHHHHSSSCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-----------------------TSCEEEEECSSCT
T ss_pred hhHHHHhcccccccceEEEEeCCccc-CccHHHHHHHHHHhccc-----------------------cCCcEEEEcCCCC
Confidence 0 00135889999999999998 23333333334333320 4689999999997
Q ss_pred CC
Q 012319 407 LS 408 (466)
Q Consensus 407 ~~ 408 (466)
..
T Consensus 375 ~~ 376 (673)
T 2wv9_A 375 GT 376 (673)
T ss_dssp TC
T ss_pred hh
Confidence 43
No 70
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.72 E-value=6.4e-18 Score=181.51 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=93.4
Q ss_pred CCcHHHHHHHHHHHh----cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 195 EPTPIQKACIPAAAH----QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~----~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
.|+|+|.++|+.++. +++ +++++++||||||+++ ++++..++...- .......++++|||+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~-~~ll~~~TGsGKT~~~-~~~~~~l~~~~~-------------~~~~~~~~~~vlil~ 242 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKK-RSLITMATGTGKTVVA-FQISWKLWSARW-------------NRTGDYRKPRILFLA 242 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCS-EEEEEECTTSCHHHHH-HHHHHHHHHTTC-------------CSSCSSSCCCEEEEE
T ss_pred CchHHHHHHHHHHHHHHhcCCC-ceEEEecCCCChHHHH-HHHHHHHHhccc-------------ccccccCCCeEEEEe
Confidence 699999999998865 344 7999999999999996 445555543200 000112457899999
Q ss_pred CcHHHHHHHH-HHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCC-CccccCCcccEEEecc
Q 012319 271 PTRELALQVT-DHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-KHLVELHTLSFFVLDE 348 (466)
Q Consensus 271 PtreLa~Qv~-~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~-~~~~~l~~l~~lViDE 348 (466)
||++|+.|++ +.+..+ +..+..+.++ ......+|+|+||++|...+.... ...+.+..+.+|||||
T Consensus 243 P~~~L~~Q~~~~~~~~~----~~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDE 310 (590)
T 3h1t_A 243 DRNVLVDDPKDKTFTPF----GDARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDE 310 (590)
T ss_dssp C-----------CCTTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESC
T ss_pred CCHHHHHHHHHHHHHhc----chhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEEC
Confidence 9999999999 777655 3334334332 234578999999999988764211 1223457789999999
Q ss_pred cchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC
Q 012319 349 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 407 (466)
Q Consensus 349 ad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~ 407 (466)
||++... ....+..|+.+++ ..++|+||||...
T Consensus 311 aH~~~~~-~~~~~~~il~~~~-------------------------~~~~l~lTATP~~ 343 (590)
T 3h1t_A 311 CHRGSAR-DNSNWREILEYFE-------------------------PAFQIGMTATPLR 343 (590)
T ss_dssp CC----------CHHHHHHST-------------------------TSEEEEEESSCSC
T ss_pred Ccccccc-chHHHHHHHHhCC-------------------------cceEEEecccccc
Confidence 9999743 2355677777775 4689999999864
No 71
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.71 E-value=1.5e-17 Score=171.97 Aligned_cols=134 Identities=15% Similarity=0.188 Sum_probs=94.7
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
++|++||||||||++|++|+++.++.. ++++|||+||++||.|+++.+. ++.
T Consensus 4 ~~lv~a~TGsGKT~~~l~~~l~~~~~~----------------------g~~~lvl~Pt~~La~Q~~~~~~------~~~ 55 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRVLPQLVREAVKK----------------------RLRTVILAPTRVVASEMYEALR------GEP 55 (431)
T ss_dssp EEEEECCTTSCTTTTHHHHHHHHHHHT----------------------TCCEEEEESSHHHHHHHHHHTT------TSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhC----------------------CCCEEEECcHHHHHHHHHHHhC------CCe
Confidence 999999999999999999999877532 4589999999999999998775 345
Q ss_pred EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCC
Q 012319 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNG 373 (466)
Q Consensus 294 v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~ 373 (466)
+....|+... .-..+.-+.++|.+.+.+.+... ..++++.+|||||||++ +.++...+..+.....
T Consensus 56 v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~---- 121 (431)
T 2v6i_A 56 IRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS---- 121 (431)
T ss_dssp EEEC--------------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH----
T ss_pred EEEEecCccc-----cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh----
Confidence 5544443221 12234567788999887666432 45889999999999997 3444444444443321
Q ss_pred CCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 374 SNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
...+|+|+||||++..
T Consensus 122 -------------------~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 122 -------------------MGDAGAIFMTATPPGT 137 (431)
T ss_dssp -------------------TTSCEEEEEESSCTTC
T ss_pred -------------------CCCCcEEEEeCCCCcc
Confidence 1468999999999853
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.71 E-value=3.2e-17 Score=184.81 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=116.3
Q ss_pred CCcHHHHHHHHHHHhc-------------CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCC
Q 012319 195 EPTPIQKACIPAAAHQ-------------GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK 261 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~-------------~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
.|+|+|..|++.++.. ++ +.+++++||||||+++ ++++..+.. ..
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~-~gli~~~TGSGKT~t~-~~l~~ll~~--------------------~~ 328 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPES-GGYIWHTTGSGKTLTS-FKAARLATE--------------------LD 328 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGG-SEEEEECTTSSHHHHH-HHHHHHHTT--------------------CT
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCC-CEEEEecCCCCHHHHH-HHHHHHHHh--------------------cC
Confidence 5999999999998751 23 8999999999999997 666644311 11
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh-cCCcEEEeCcHHHHHHHhCCCCccccCCc
Q 012319 262 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHT 340 (466)
Q Consensus 262 ~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~-~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 340 (466)
...++|||+|+++|+.|+.+.|..++.. .+.++.+.......+. .+++|+|+||++|..++..... ...+..
T Consensus 329 ~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~-~~~~~~ 401 (1038)
T 2w00_A 329 FIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESD-LPVYNQ 401 (1038)
T ss_dssp TCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCC-CGGGGS
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccc-hhcccc
Confidence 2358999999999999999999887542 1235555555555554 5789999999999998754311 123557
Q ss_pred ccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCCC
Q 012319 341 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 408 (466)
Q Consensus 341 l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~ 408 (466)
..+|||||||++... .....|+..++ ..++|+||||+...
T Consensus 402 ~~lvIiDEAHrs~~~---~~~~~I~~~~p-------------------------~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 402 QVVFIFDECHRSQFG---EAQKNLKKKFK-------------------------RYYQFGFTGTPIFP 441 (1038)
T ss_dssp CEEEEEESCCTTHHH---HHHHHHHHHCS-------------------------SEEEEEEESSCCCS
T ss_pred ccEEEEEccchhcch---HHHHHHHHhCC-------------------------cccEEEEeCCcccc
Confidence 789999999998732 33556677775 47999999999743
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.65 E-value=5.4e-16 Score=165.27 Aligned_cols=133 Identities=17% Similarity=0.040 Sum_probs=101.8
Q ss_pred CCCCCcHHHHHHHHHH---HhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEE
Q 012319 192 GFKEPTPIQKACIPAA---AHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 268 (466)
Q Consensus 192 g~~~pt~iQ~~~i~~~---l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi 268 (466)
|| .|+|.|.+++..+ +..++ ++++.||||+|||++|++|++.. ++++||
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~-~~~~~a~TGtGKT~~~l~p~l~~--------------------------~~~v~i 52 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNF-LVALNAPTGSGKTLFSLLVSLEV--------------------------KPKVLF 52 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTC-EEEEECCTTSSHHHHHHHHHHHH--------------------------CSEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCC-cEEEECCCCccHHHHHHHHHHhC--------------------------CCeEEE
Confidence 45 6899999977654 34555 99999999999999999999871 358999
Q ss_pred EeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCH---------------------------------HHHH--------
Q 012319 269 ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST---------------------------------EKQE-------- 307 (466)
Q Consensus 269 l~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~---------------------------------~~~~-------- 307 (466)
++||++|+.|+.+.+..+....++++..+.|+.+. ....
T Consensus 53 ~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~ 132 (551)
T 3crv_A 53 VVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGL 132 (551)
T ss_dssp EESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCC
Confidence 99999999999999998877777888877764221 1111
Q ss_pred ----------HHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhc
Q 012319 308 ----------RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 354 (466)
Q Consensus 308 ----------~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~ 354 (466)
+.....++|||+|++.|++.+.... ........+|||||||+|.+
T Consensus 133 ~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~--~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 133 QDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREF--IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTT--SCCCSTTEEEEETTGGGGGG
T ss_pred cCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHh--cCCCcCCeEEEEecccchHH
Confidence 2233578999999999998754322 11124678999999999987
No 74
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.65 E-value=5e-17 Score=176.04 Aligned_cols=133 Identities=17% Similarity=0.114 Sum_probs=96.2
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
+++++||||||||+ +++..+... .++||++|||+||.|+++.+..+ ++.
T Consensus 157 ~vlv~apTGSGKT~----~al~~l~~~-----------------------~~gl~l~PtR~LA~Qi~~~l~~~----g~~ 205 (677)
T 3rc3_A 157 IIFHSGPTNSGKTY----HAIQKYFSA-----------------------KSGVYCGPLKLLAHEIFEKSNAA----GVP 205 (677)
T ss_dssp EEEEECCTTSSHHH----HHHHHHHHS-----------------------SSEEEEESSHHHHHHHHHHHHHT----TCC
T ss_pred EEEEEcCCCCCHHH----HHHHHHHhc-----------------------CCeEEEeCHHHHHHHHHHHHHhc----CCc
Confidence 99999999999997 555555421 23599999999999999999875 678
Q ss_pred EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHHHhCCCCCC
Q 012319 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNG 373 (466)
Q Consensus 294 v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~ 373 (466)
+..++|+.. ++|+|||++.+++.........+..+++|||||||+|++.++...+..++..++.
T Consensus 206 v~lltG~~~-------------~iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~--- 269 (677)
T 3rc3_A 206 CDLVTGEER-------------VTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA--- 269 (677)
T ss_dssp EEEECSSCE-------------ECCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE---
T ss_pred EEEEECCee-------------EEecCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCc---
Confidence 888888743 3444444443333211001122467899999999999999999999999988862
Q ss_pred CCCCCccccchhhhhcccCCCCceEEEEeeecCCCHHHHH
Q 012319 374 SNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 413 (466)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~~~~~~~ 413 (466)
..+|++++|||.+....+..
T Consensus 270 --------------------~~i~il~~SAT~~~i~~l~~ 289 (677)
T 3rc3_A 270 --------------------EEVHLCGEPAAIDLVMELMY 289 (677)
T ss_dssp --------------------EEEEEEECGGGHHHHHHHHH
T ss_pred --------------------cceEEEeccchHHHHHHHHH
Confidence 46899999999754333333
No 75
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.53 E-value=9.2e-15 Score=155.33 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=86.5
Q ss_pred CCCCCCcHHHHHHHHHH---HhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEE
Q 012319 191 LGFKEPTPIQKACIPAA---AHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 267 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~---l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 267 (466)
.|| .|+|+|.+++..+ +..++ ++++.||||+|||++|++|++.. +.++|
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~-~~~~~a~TGtGKT~~~l~~~~~~--------------------------~~~~~ 55 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGK-TLLLNAKPGLGKTVFVEVLGMQL--------------------------KKKVL 55 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTC-EEEEECCTTSCHHHHHHHHHHHH--------------------------TCEEE
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCC-CEEEEcCCCCcHHHHHHHHHHhC--------------------------CCcEE
Confidence 467 8999999987544 34555 99999999999999999998652 24899
Q ss_pred EEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCH--------HH------------------------H---------
Q 012319 268 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST--------EK------------------------Q--------- 306 (466)
Q Consensus 268 il~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~--------~~------------------------~--------- 306 (466)
|++||++|+.|+++.+..+ ++++..+.|.... .. .
T Consensus 56 ~~~~t~~l~~q~~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~ 131 (540)
T 2vl7_A 56 IFTRTHSQLDSIYKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVD 131 (540)
T ss_dssp EEESCHHHHHHHHHHHGGG----TCCEEEC--------------------------------------------------
T ss_pred EEcCCHHHHHHHHHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcC
Confidence 9999999999999888764 3444444332210 00 0
Q ss_pred ------HHHHhcCCcEEEeCcHHHHHHHhCCCCc----cccCCcccEEEecccchhhc
Q 012319 307 ------ERLLKARPELVVGTPGRLWELMSGGEKH----LVELHTLSFFVLDEADRMIE 354 (466)
Q Consensus 307 ------~~~l~~~~dIiV~TP~~L~~~l~~~~~~----~~~l~~l~~lViDEad~ll~ 354 (466)
.+.....++|||+|+..|++.+...... ...+....+|||||||+|.+
T Consensus 132 ~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 132 YCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp -------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred CChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 0111235799999999998754321100 00245678999999999943
No 76
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.50 E-value=3.3e-14 Score=149.34 Aligned_cols=149 Identities=17% Similarity=0.191 Sum_probs=105.3
Q ss_pred CCcHHHHHHHHHHH---hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAAA---HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l---~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.|+|+|.+++..++ ..+. ++|++.+||+|||++++. ++..+... ....++|||||
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~-~~ilad~~GlGKT~~ai~-~i~~~~~~--------------------~~~~~~LIv~P 94 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGF-GICLADDMGLGKTLQTIA-VFSDAKKE--------------------NELTPSLVICP 94 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTC-CEEECCCTTSCHHHHHHH-HHHHHHHT--------------------TCCSSEEEEEC
T ss_pred cchHHHHHHHHHHHHHhhCCC-CEEEEeCCCCcHHHHHHH-HHHHHHhc--------------------CCCCCEEEEcc
Confidence 69999999997663 3344 899999999999999754 44444311 12346999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ 351 (466)
+ .|+.|..+++.+++. ++++..++|+... .....++|+|+||+.|..... +....+.+|||||||+
T Consensus 95 ~-~l~~qw~~e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~ 160 (500)
T 1z63_A 95 L-SVLKNWEEELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQN 160 (500)
T ss_dssp S-TTHHHHHHHHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGG
T ss_pred H-HHHHHHHHHHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCccc
Confidence 5 689999999999865 4566666666421 123467999999999865331 3345678999999999
Q ss_pred hhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 352 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 352 ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
+...+ ......+..++ ..+.+++|||..
T Consensus 161 ~kn~~--~~~~~~l~~l~-------------------------~~~~l~LTaTP~ 188 (500)
T 1z63_A 161 IKNPQ--TKIFKAVKELK-------------------------SKYRIALTGTPI 188 (500)
T ss_dssp GSCTT--SHHHHHHHTSC-------------------------EEEEEEECSSCS
T ss_pred cCCHh--HHHHHHHHhhc-------------------------cCcEEEEecCCC
Confidence 96443 23444555553 357899999985
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.42 E-value=2.2e-13 Score=153.84 Aligned_cols=135 Identities=21% Similarity=0.183 Sum_probs=92.7
Q ss_pred CCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 012319 194 KEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 273 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 273 (466)
..|+|+|..++..++......+|++++||+|||++++..+...+.. ....++|||||+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~---------------------g~~~rvLIVvP~- 209 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS---------------------GAAERVLIIVPE- 209 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT---------------------SSCCCEEEECCT-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh---------------------CCCCeEEEEeCH-
Confidence 3799999999998876544489999999999999997766555421 112369999999
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHH--HHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccch
Q 012319 274 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER--LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 351 (466)
Q Consensus 274 eLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~--~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ 351 (466)
.|+.|....+...+ ++.+..+.|+........ ......+|+|+|++.|..... ....+....+.+|||||||+
T Consensus 210 sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~--~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 210 TLQHQWLVEMLRRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQ--RLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp TTHHHHHHHHHHHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTT--TTHHHHTSCCCEEEECCSSC
T ss_pred HHHHHHHHHHHHHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHH--HHHHhhhcCCCEEEehhhHh
Confidence 99999999997765 555555544322111100 111256999999988853211 11123356789999999999
Q ss_pred hhcc
Q 012319 352 MIEN 355 (466)
Q Consensus 352 ll~~ 355 (466)
+...
T Consensus 285 ~kn~ 288 (968)
T 3dmq_A 285 LVWS 288 (968)
T ss_dssp CCCB
T ss_pred hcCC
Confidence 9643
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.39 E-value=3.4e-12 Score=138.33 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=108.0
Q ss_pred CCcHHHHHHHHHHHh--------cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEE
Q 012319 195 EPTPIQKACIPAAAH--------QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 266 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~--------~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 266 (466)
.++|+|.+++..++. ++. ..|++.+||+|||+..+..+...+... ........++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~-g~ILad~mGlGKT~~~i~~i~~l~~~~----------------~~~~p~~~~~ 117 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSY-GCIMADEMGLGKTLQCITLIWTLLKQS----------------PDCKPEIDKV 117 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCC-EEEECCCTTSCHHHHHHHHHHHHHHCC----------------TTSSCSCSCE
T ss_pred cccHHHHHHHHHHHHhhhcccccCCC-CeEeeeCCCchHHHHHHHHHHHHHHhC----------------ccccCCCCcE
Confidence 689999999988752 333 789999999999999866655443110 0011122368
Q ss_pred EEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHH--HH-h-----cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 267 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER--LL-K-----ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 267 Lil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~--~l-~-----~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
|||+|+ .|+.|..+++.+++.. .+.+..++||........ .+ . ...+|+|+|++.|...... +..
T Consensus 118 LiV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~-----l~~ 190 (644)
T 1z3i_X 118 IVVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV-----LHK 190 (644)
T ss_dssp EEEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT-----TTT
T ss_pred EEEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH-----hhc
Confidence 999997 8999999999998764 466777777754332211 11 1 1478999999999765421 223
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
..+.+|||||||++-.. .......+..+. ....+++|||.-
T Consensus 191 ~~~~~vI~DEaH~ikn~--~~~~~~al~~l~-------------------------~~~rl~LTgTPi 231 (644)
T 1z3i_X 191 GKVGLVICDEGHRLKNS--DNQTYLALNSMN-------------------------AQRRVLISGTPI 231 (644)
T ss_dssp SCCCEEEETTGGGCCTT--CHHHHHHHHHHC-------------------------CSEEEEECSSCS
T ss_pred CCccEEEEECceecCCh--hhHHHHHHHhcc-------------------------cCcEEEEecCcc
Confidence 46789999999998532 233334444443 346799999974
No 79
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.37 E-value=1.8e-12 Score=139.62 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=67.4
Q ss_pred CCcHHHHHHHHHH---HhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAA---AHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~---l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.|+|.|.+.+..+ +..++ ++++.||||+|||++|++|++.++... +.++||++|
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~-~~~~~apTGtGKT~a~l~p~l~~~~~~----------------------~~kvli~t~ 59 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSY-GVALESPTGSGKTIMALKSALQYSSER----------------------KLKVLYLVR 59 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSS-EEEEECCTTSCHHHHHHHHHHHHHHHH----------------------TCEEEEEES
T ss_pred CCCHHHHHHHHHHHHHHHcCC-CEEEECCCCCCHHHHHHHHHHHhhhhc----------------------CCeEEEECC
Confidence 6899998887643 34555 999999999999999999999987532 358999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECC
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGG 300 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg 300 (466)
|++|+.|+.+.+..+....++++..+.|+
T Consensus 60 T~~l~~Qi~~el~~l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 60 TNSQEEQVIKELRSLSSTMKIRAIPMQGR 88 (620)
T ss_dssp SHHHHHHHHHHHHHHHHHSCCCEEECCCH
T ss_pred CHHHHHHHHHHHHHHhhccCeEEEEEECC
Confidence 99999999999999887667777666654
No 80
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.31 E-value=6.9e-12 Score=139.20 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=106.0
Q ss_pred CCcHHHHHHHHHHH---hcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAAA---HQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l---~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.++|+|.+++..++ ..+. +.|++.+||+|||+..+..+...+... .....+|||||
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~-~~ILademGlGKT~~ai~~i~~l~~~~--------------------~~~~~~LIV~P 294 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGD-NGILADEMGLGKTVQTVAFISWLIFAR--------------------RQNGPHIIVVP 294 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTC-CEEECCCTTSSTTHHHHHHHHHHHHHH--------------------SCCSCEEEECC
T ss_pred CcCHHHHHHHHHHHHHhhcCC-CEEEEeCCCcchHHHHHHHHHHHHHhc--------------------CCCCCEEEEEC
Confidence 68899999997664 2444 899999999999998766554433221 11225899999
Q ss_pred cHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH------------hcCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 272 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL------------KARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l------------~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
..|+.|..++|..++. ++.+.+++|+.......+.. ...++|+|+|++.+...... +...
T Consensus 295 -~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-----l~~~ 366 (800)
T 3mwy_W 295 -LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-----LGSI 366 (800)
T ss_dssp -TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-----HHTS
T ss_pred -chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH-----HhcC
Confidence 7788999999998864 46666666665443332221 23578999999999764321 2233
Q ss_pred cccEEEecccchhhccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecC
Q 012319 340 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 406 (466)
Q Consensus 340 ~l~~lViDEad~ll~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~ 406 (466)
...+|||||||++-. ....+...+..++ ....+++|||.-
T Consensus 367 ~w~~vIvDEaH~lkn--~~s~~~~~l~~l~-------------------------~~~rl~LTgTPi 406 (800)
T 3mwy_W 367 KWQFMAVDEAHRLKN--AESSLYESLNSFK-------------------------VANRMLITGTPL 406 (800)
T ss_dssp EEEEEEETTGGGGCC--SSSHHHHHHTTSE-------------------------EEEEEEECSCCC
T ss_pred CcceeehhhhhhhcC--chhHHHHHHHHhh-------------------------hccEEEeeCCcC
Confidence 578999999999843 2234444444442 345689999984
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.12 E-value=3.8e-10 Score=120.62 Aligned_cols=133 Identities=23% Similarity=0.223 Sum_probs=99.6
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEe
Q 012319 191 LGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 270 (466)
Q Consensus 191 ~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 270 (466)
+|. +|+++|......+ +.|+ |+...||+|||+++.+|++-..+ .|..|.||+
T Consensus 72 lg~-r~~dvQligg~~L-~~G~---iaEM~TGEGKTLva~lp~~lnAL-----------------------~G~~vhVvT 123 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIAL-HEGK---VAEMKTGEGKTLAATMPIYLNAL-----------------------IGKGVHLVT 123 (822)
T ss_dssp TSC-CCCHHHHHHHHHH-HTTC---EEECCTTSCHHHHTHHHHHHHHT-----------------------TSSCEEEEE
T ss_pred hCC-CCcHHHHHHHHHH-hCCC---hhhccCCCCccHHHHHHHHHHHh-----------------------cCCceEEEe
Confidence 666 7999999888766 6664 88999999999999999875443 245799999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCcEEEEEECC--------------------------------------------------
Q 012319 271 PTRELALQVTDHLKEVAKGINVRVVPIVGG-------------------------------------------------- 300 (466)
Q Consensus 271 PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg-------------------------------------------------- 300 (466)
||+.||.|-++.+..++..+|+.+++++..
T Consensus 124 ~ndyLA~rdae~m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 203 (822)
T 3jux_A 124 VNDYLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVE 203 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEE
T ss_pred ccHHHHHhHHHHHHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhcccc
Confidence 999999999999999999999999999872
Q ss_pred CCHHHHHHHHhcCCcEEEeCcHHHH-HHHhCCC---CccccCCcccEEEecccchhh
Q 012319 301 MSTEKQERLLKARPELVVGTPGRLW-ELMSGGE---KHLVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 301 ~~~~~~~~~l~~~~dIiV~TP~~L~-~~l~~~~---~~~~~l~~l~~lViDEad~ll 353 (466)
++...... .-.+||..||..-|- +.|.... ..-...+.+.+.||||+|.||
T Consensus 204 ~~~~err~--aY~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 204 LKEITRKE--AYLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp CCBCCHHH--HHHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred CCHHHHHH--HhcCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 22111111 124899999998862 3332110 111235778999999999865
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.95 E-value=2.7e-09 Score=114.67 Aligned_cols=134 Identities=21% Similarity=0.273 Sum_probs=81.7
Q ss_pred cHHHHHHHHHHHhcCCccEEEecCCCCchh--HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 197 TPIQKACIPAAAHQGKVDIIGAAETGSGKT--LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 197 t~iQ~~~i~~~l~~~~~dvl~~a~TGSGKT--l~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
+++|+.+++.++.++ +++++|++||||| ++++++++..+. ...+.++++++||+.
T Consensus 151 ~~~Q~~Ai~~~l~~~--~~vi~G~pGTGKTt~l~~ll~~l~~~~---------------------~~~~~~vll~APTg~ 207 (608)
T 1w36_D 151 INWQKVAAAVALTRR--ISVISGGPGTGKTTTVAKLLAALIQMA---------------------DGERCRIRLAAPTGK 207 (608)
T ss_dssp CCHHHHHHHHHHTBS--EEEEECCTTSTHHHHHHHHHHHHHHTC---------------------SSCCCCEEEEBSSHH
T ss_pred CHHHHHHHHHHhcCC--CEEEEeCCCCCHHHHHHHHHHHHHHhh---------------------hcCCCeEEEEeCChh
Confidence 789999999997654 9999999999999 567777765431 123568999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEE-eCcHHHHHHHhCCCCccccCCcccEEEecccchhh
Q 012319 275 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVV-GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 353 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV-~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll 353 (466)
+|.++.+.+...+..+++..... .+... . ....+-++ .+|+.. . +.... .....+++||||||+ |+
T Consensus 208 AA~~L~e~~~~~~~~l~l~~~~~-~~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~---~~~l~~d~lIIDEAs-ml 274 (608)
T 1w36_D 208 AAARLTESLGKALRQLPLTDEQK-KRIPE--D----ASTLHRLLGAQPGSQ-R-LRHHA---GNPLHLDVLVVDEAS-MI 274 (608)
T ss_dssp HHHHHHHHHTHHHHHSSCCSCCC-CSCSC--C----CBTTTSCC-------------CT---TSCCSCSEEEECSGG-GC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHH-hccch--h----hhhhHhhhccCCCch-H-HHhcc---CCCCCCCEEEEechh-hC
Confidence 99999988877655443321000 00000 0 00111122 223221 1 11111 112378999999999 65
Q ss_pred ccCCHHHHHHHHHhCC
Q 012319 354 ENGHFRELQSIIDMLP 369 (466)
Q Consensus 354 ~~g~~~~l~~Il~~l~ 369 (466)
+ ...+..|+..++
T Consensus 275 ~---~~~~~~Ll~~l~ 287 (608)
T 1w36_D 275 D---LPMMSRLIDALP 287 (608)
T ss_dssp B---HHHHHHHHHTCC
T ss_pred C---HHHHHHHHHhCC
Confidence 4 567788888886
No 83
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.10 E-value=2e-05 Score=81.67 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=52.3
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHhc----CCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCC
Q 012319 187 SIYRLGFKEPTPIQKACIPAAAHQ----GKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 262 (466)
Q Consensus 187 ~l~~~g~~~pt~iQ~~~i~~~l~~----~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (466)
....+.|..+++-|+.++..++.. .. .+++.|+.|||||.+. ..++..+... +
T Consensus 17 ~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll-~~~~~~l~~~---------------------~ 73 (459)
T 3upu_A 17 RGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLT-KFIIEALIST---------------------G 73 (459)
T ss_dssp ----CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHH-HHHHHHHHHT---------------------T
T ss_pred ccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHH-HHHHHHHHhc---------------------C
Confidence 345577899999999999877543 34 8999999999999644 4455555422 1
Q ss_pred CeEEEEEeCcHHHHHHHHHHH
Q 012319 263 HLRALIITPTRELALQVTDHL 283 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l 283 (466)
...+++++||...|..+...+
T Consensus 74 ~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 74 ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCCEEEEESSHHHHHHHHHHH
T ss_pred CceEEEecCcHHHHHHHHhhh
Confidence 136899999999887766544
No 84
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.05 E-value=1.3e-05 Score=86.57 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=53.3
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.+.+-|.+|+..++..+. -.||+||.|||||.+.+ .++.+++.. +.++|+++||..
T Consensus 189 ~LN~~Q~~AV~~al~~~~-~~lI~GPPGTGKT~ti~-~~I~~l~~~----------------------~~~ILv~a~TN~ 244 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKE-LAIIHGPPGTGKTTTVV-EIILQAVKQ----------------------GLKVLCCAPSNI 244 (646)
T ss_dssp TCCHHHHHHHHHHHHCSS-EEEEECCTTSCHHHHHH-HHHHHHHHT----------------------TCCEEEEESSHH
T ss_pred CCCHHHHHHHHHHhcCCC-ceEEECCCCCCHHHHHH-HHHHHHHhC----------------------CCeEEEEcCchH
Confidence 578999999999877654 67999999999998753 344444321 357999999999
Q ss_pred HHHHHHHHHHHH
Q 012319 275 LALQVTDHLKEV 286 (466)
Q Consensus 275 La~Qv~~~l~~l 286 (466)
.|.++...|...
T Consensus 245 AvD~i~erL~~~ 256 (646)
T 4b3f_X 245 AVDNLVERLALC 256 (646)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999998888654
No 85
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.03 E-value=3.7e-05 Score=82.75 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=53.7
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 193 FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 193 ~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
+..+++.|..++..++..+ .++++||.|||||.+. ..++.++... .+.++|+++||
T Consensus 178 ~~~ln~~Q~~av~~~l~~~--~~li~GppGTGKT~~~-~~~i~~l~~~---------------------~~~~ilv~a~t 233 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRP--LSLIQGPPGTGKTVTS-ATIVYHLARQ---------------------GNGPVLVCAPS 233 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCS--EEEEECCTTSCHHHHH-HHHHHHHHTS---------------------SSCCEEEEESS
T ss_pred cCCCCHHHHHHHHHHhcCC--CeEEECCCCCCHHHHH-HHHHHHHHHc---------------------CCCeEEEEeCc
Confidence 4568999999999886544 7899999999999765 3344444310 24579999999
Q ss_pred HHHHHHHHHHHHHH
Q 012319 273 RELALQVTDHLKEV 286 (466)
Q Consensus 273 reLa~Qv~~~l~~l 286 (466)
...|.++...+...
T Consensus 234 n~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 234 NIAVDQLTEKIHQT 247 (624)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998887654
No 86
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=8e-05 Score=82.25 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=54.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 193 FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 193 ~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
+..+++.|..++..++..+ -+++.||.|||||.+. ..++.+++... +.++|+++||
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~--~~lI~GppGTGKT~~i-~~~i~~l~~~~---------------------~~~ILv~a~t 413 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRP--LSLIQGPPGTGKTVTS-ATIVYHLSKIH---------------------KDRILVCAPS 413 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCS--EEEEECSTTSSHHHHH-HHHHHHHHHHH---------------------CCCEEEEESS
T ss_pred cccCCHHHHHHHHHHhcCC--CEEEECCCCCCHHHHH-HHHHHHHHhCC---------------------CCeEEEEcCc
Confidence 3467899999999886543 7899999999999765 33444444321 3479999999
Q ss_pred HHHHHHHHHHHHHH
Q 012319 273 RELALQVTDHLKEV 286 (466)
Q Consensus 273 reLa~Qv~~~l~~l 286 (466)
...|.++...+...
T Consensus 414 n~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 414 NVAVDHLAAKLRDL 427 (802)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988765
No 87
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.94 E-value=2.9e-05 Score=82.58 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=47.9
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.+++.|..++..++..+ .+++.|+.|||||.+. ..++..+.. .+.++++++||..
T Consensus 189 ~L~~~Q~~Av~~~~~~~--~~~I~G~pGTGKTt~i-~~l~~~l~~----------------------~g~~Vl~~ApT~~ 243 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHR--LVVLTGGPGTGKSTTT-KAVADLAES----------------------LGLEVGLCAPTGK 243 (574)
T ss_dssp TCCHHHHHHHHHHTTCS--EEEEECCTTSCHHHHH-HHHHHHHHH----------------------TTCCEEEEESSHH
T ss_pred CCCHHHHHHHHHHHhCC--EEEEEcCCCCCHHHHH-HHHHHHHHh----------------------cCCeEEEecCcHH
Confidence 68999999999986544 8999999999999653 233333321 1357999999999
Q ss_pred HHHHHHHHH
Q 012319 275 LALQVTDHL 283 (466)
Q Consensus 275 La~Qv~~~l 283 (466)
.|..+.+.+
T Consensus 244 Aa~~L~e~~ 252 (574)
T 3e1s_A 244 AARRLGEVT 252 (574)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhHhhh
Confidence 988776543
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.91 E-value=0.00013 Score=80.47 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=53.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCc
Q 012319 193 FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 272 (466)
Q Consensus 193 ~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 272 (466)
...+++.|..++..++..+ .+++.||.|||||.+. ..++..+... .+.++|+++||
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~--~~lI~GppGTGKT~ti-~~~i~~l~~~---------------------~~~~ilv~a~t 409 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRP--LSLIQGPPGTGKTVTS-ATIVYHLARQ---------------------GNGPVLVCAPS 409 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSS--EEEEECCTTSCHHHHH-HHHHHHHHTT---------------------CSSCEEEEESS
T ss_pred ccCCCHHHHHHHHHhccCC--eEEEEcCCCCCHHHHH-HHHHHHHHHc---------------------CCCcEEEEcCc
Confidence 3467999999999886544 7899999999999765 3444444321 23479999999
Q ss_pred HHHHHHHHHHHHHH
Q 012319 273 RELALQVTDHLKEV 286 (466)
Q Consensus 273 reLa~Qv~~~l~~l 286 (466)
...|.++.+.+...
T Consensus 410 n~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 410 NIAVDQLTEKIHQT 423 (800)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887654
No 89
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.03 E-value=0.0019 Score=69.81 Aligned_cols=70 Identities=27% Similarity=0.440 Sum_probs=52.7
Q ss_pred CCCCCcHHHHHHHHHHHh---cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEE
Q 012319 192 GFKEPTPIQKACIPAAAH---QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 268 (466)
Q Consensus 192 g~~~pt~iQ~~~i~~~l~---~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi 268 (466)
+| .|++.|..+|..++. .+....++.+.||||||+++.- ++..+ .+ .+||
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~------------------------~~-~~lv 58 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL------------------------GR-PALV 58 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH------------------------TC-CEEE
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh------------------------CC-CEEE
Confidence 56 899999998876643 2322467889999999987743 22322 01 3899
Q ss_pred EeCcHHHHHHHHHHHHHHHc
Q 012319 269 ITPTRELALQVTDHLKEVAK 288 (466)
Q Consensus 269 l~PtreLa~Qv~~~l~~l~~ 288 (466)
|+|+..+|.|+++.|..++.
T Consensus 59 v~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 59 LAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp EESSHHHHHHHHHHHHHHCT
T ss_pred EecCHHHHHHHHHHHHHHCC
Confidence 99999999999999999964
No 90
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.75 E-value=0.007 Score=60.86 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=54.9
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.|+|+|...+..+. ..+ -+++..+-+.|||.+.+..++-.++. .++..+++++||+.
T Consensus 163 ~L~p~Qk~il~~l~-~~R-~~vi~~sRq~GKT~l~a~~~l~~a~~---------------------~~g~~v~~vA~t~~ 219 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS-SKR-MTVCNLSRQLGKTTVVAIFLAHFVCF---------------------NKDKAVGILAHKGS 219 (385)
T ss_dssp CCCHHHHHHHHHHH-HSS-EEEEEECSSSCHHHHHHHHHHHHHHS---------------------SSSCEEEEEESSHH
T ss_pred CCCHHHHHHHHhhc-cCc-EEEEEEcCcCChhHHHHHHHHHHHHh---------------------CCCCeEEEEeCCHH
Confidence 78999999987763 334 68888999999998876655544321 23557999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 012319 275 LALQVTDHLKEVAKG 289 (466)
Q Consensus 275 La~Qv~~~l~~l~~~ 289 (466)
.|..+++.+..+...
T Consensus 220 qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 220 MSAEVLDRTKQAIEL 234 (385)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999888888877653
No 91
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.71 E-value=0.01 Score=63.16 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=56.1
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.|+|+|...+..+ ...+ -+++..+-|+|||.+....++-.++. .++..+++++||+.
T Consensus 163 ~l~p~Q~~i~~~l-~~~r-~~~i~~~Rq~GKS~~~a~~~l~~~~~---------------------~~~~~i~~va~t~~ 219 (592)
T 3cpe_A 163 QLRDYQRDMLKIM-SSKR-MTVCNLSRQLGKTTVVAIFLAHFVCF---------------------NKDKAVGILAHKGS 219 (592)
T ss_dssp CCCHHHHHHHHHH-HHCS-EEEEEECSSSCHHHHHHHHHHHHHHT---------------------SSSCEEEEEESSHH
T ss_pred cCCHHHHHHHHhh-cccc-EEEEEEcCccChHHHHHHHHHHHHHh---------------------CCCCeEEEEECCHH
Confidence 6899999988776 4444 78889999999998876555544431 12457999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 012319 275 LALQVTDHLKEVAKGI 290 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~ 290 (466)
.|..++..+..+....
T Consensus 220 qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 220 MSAEVLDRTKQAIELL 235 (592)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999998888877654
No 92
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.61 E-value=0.0041 Score=66.66 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=56.6
Q ss_pred CCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 012319 194 KEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 273 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 273 (466)
..+++-|.+++... .+ .++|.|+.|||||.+.+--+. +++.. .+...-++|+|++|+
T Consensus 8 ~~Ln~~Q~~av~~~--~~--~~lV~a~aGsGKT~~l~~ri~-~l~~~------------------~~~~~~~iL~ltft~ 64 (647)
T 3lfu_A 8 DSLNDKQREAVAAP--RS--NLLVLAGAGSGKTRVLVHRIA-WLMSV------------------ENCSPYSIMAVTFTN 64 (647)
T ss_dssp TTCCHHHHHHHTCC--SS--CEEEEECTTSCHHHHHHHHHH-HHHHT------------------SCCCGGGEEEEESSH
T ss_pred hcCCHHHHHHHhCC--CC--CEEEEECCCCCHHHHHHHHHH-HHHHh------------------CCCChhhEEEEeccH
Confidence 46899999999632 33 899999999999976544333 33321 112234799999999
Q ss_pred HHHHHHHHHHHHHHcC--CCcEEEEE
Q 012319 274 ELALQVTDHLKEVAKG--INVRVVPI 297 (466)
Q Consensus 274 eLa~Qv~~~l~~l~~~--~~~~v~~~ 297 (466)
.+|.++.+.+..+... .++.+..+
T Consensus 65 ~aa~e~~~rl~~~~~~~~~~~~v~Tf 90 (647)
T 3lfu_A 65 KAAAEMRHRIGQLMGTSQGGMWVGTF 90 (647)
T ss_dssp HHHHHHHHHHHHHHCSCCTTCEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCcEEEcH
Confidence 9999999999887543 24455443
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.48 E-value=0.019 Score=50.68 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHH--------hcCCccEEEecCCCCchhHHH
Q 012319 197 TPIQKACIPAAA--------HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 197 t~iQ~~~i~~~l--------~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++.|..++..+. ..+. .+++.||+|+|||...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGK-GLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCC-EEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCC-EEEEECCCCCCHHHHH
Confidence 445555554442 2344 8999999999999654
No 94
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.21 E-value=0.0074 Score=65.22 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.+++-|.+++... .+ .++|.|+.|||||.+.+--+...+... +....++|+|+.|+.
T Consensus 2 ~L~~~Q~~av~~~--~~--~~lV~AgaGSGKT~~l~~ri~~ll~~~-------------------~~~~~~IL~lTfT~~ 58 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TG--PCLVLAGAGSGKTRVITNKIAHLIRGC-------------------GYQARHIAAVTFTNK 58 (673)
T ss_dssp CCCHHHHHHHHCC--SS--EEEECCCTTSCHHHHHHHHHHHHHHHH-------------------CCCGGGEEEEESSHH
T ss_pred CCCHHHHHHHhCC--CC--CEEEEeCCCCChHHHHHHHHHHHHHhc-------------------CCCHHHeEEEeccHH
Confidence 4789999998642 33 899999999999987644444333221 112347999999999
Q ss_pred HHHHHHHHHHHHHcCC---CcEEEEEE
Q 012319 275 LALQVTDHLKEVAKGI---NVRVVPIV 298 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~---~~~v~~~~ 298 (466)
.|.++.+.+..+.... ++.|..++
T Consensus 59 Aa~em~~Rl~~~l~~~~~~~~~v~Tfh 85 (673)
T 1uaa_A 59 AAREMKERVGQTLGRKEARGLMISTFH 85 (673)
T ss_dssp HHHHHHHHHHHHSCTTTTTTSEEEEHH
T ss_pred HHHHHHHHHHHHcCcccccCCEEEeHH
Confidence 9999999998875432 45665544
No 95
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.075 Score=51.90 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=17.7
Q ss_pred ccEEEecCCCCchhHHHHHHHHHHH
Q 012319 213 VDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 213 ~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.++++.||+|+|||.+. -.++..+
T Consensus 46 ~~lli~GpPGTGKT~~v-~~v~~~L 69 (318)
T 3te6_A 46 KLFYITNADDSTKFQLV-NDVMDEL 69 (318)
T ss_dssp CEEEEECCCSHHHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 48999999999999765 3344444
No 96
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.89 E-value=0.011 Score=54.78 Aligned_cols=33 Identities=9% Similarity=0.078 Sum_probs=22.5
Q ss_pred EEEeCcHHHHHHHhCCCCccccCCcccEEEecccchh
Q 012319 316 LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 352 (466)
Q Consensus 316 IiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~l 352 (466)
+-+.+...++..+... ..-...++||||||+.+
T Consensus 69 ~~~~~~~~i~~~i~~~----~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 69 VEVESAPEILNYIMSN----SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp EEESSTHHHHHHHHST----TSCTTCCEEEECSGGGS
T ss_pred cccCCHHHHHHHHHHH----hhCCCCCEEEEecCccC
Confidence 4466777788777542 11235789999999865
No 97
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.84 E-value=0.014 Score=63.63 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=56.8
Q ss_pred CCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcH
Q 012319 194 KEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 273 (466)
Q Consensus 194 ~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 273 (466)
..+++-|.+++... .+ .++|.|..|||||.+..--+...+ .. .+...-++|+|+.|+
T Consensus 10 ~~Ln~~Q~~av~~~--~g--~~lV~AgAGSGKT~vL~~ri~~ll-~~------------------~~~~p~~IL~vTFTn 66 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EG--PLLIMAGAGSGKTRVLTHRIAYLM-AE------------------KHVAPWNILAITFTN 66 (724)
T ss_dssp TTSCHHHHHHHHCC--SS--CEEEEECTTSCHHHHHHHHHHHHH-HT------------------TCCCGGGEEEEESSH
T ss_pred hhCCHHHHHHHhCC--CC--CEEEEEcCCCCHHHHHHHHHHHHH-Hh------------------cCCCHHHeEEEeccH
Confidence 46899999998642 33 899999999999977644443333 21 112234799999999
Q ss_pred HHHHHHHHHHHHHHcC--CCcEEEEEE
Q 012319 274 ELALQVTDHLKEVAKG--INVRVVPIV 298 (466)
Q Consensus 274 eLa~Qv~~~l~~l~~~--~~~~v~~~~ 298 (466)
..|.++.+.+..+... .++.|..++
T Consensus 67 kAA~Em~~Rl~~~l~~~~~~~~v~Tfh 93 (724)
T 1pjr_A 67 KAAREMRERVQSLLGGAAEDVWISTFH 93 (724)
T ss_dssp HHHHHHHHHHHHHHGGGGTTSEEEEHH
T ss_pred HHHHHHHHHHHHHhcccccCcEEeeHH
Confidence 9999999988877532 245555543
No 98
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.65 E-value=0.034 Score=59.96 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=50.2
Q ss_pred CCcHHHHHHHHHHHh---cCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeC
Q 012319 195 EPTPIQKACIPAAAH---QGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 271 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~---~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 271 (466)
.|+..|..+|..++. .+....++.+-||||||++..- ++..+ .+ .+|||+|
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~------------------------~~-~~lvv~~ 65 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV------------------------NK-PTLVIAH 65 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH------------------------CC-CEEEECS
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh------------------------CC-CEEEEEC
Confidence 788899888876543 3422467789999999977643 22222 01 3899999
Q ss_pred cHHHHHHHHHHHHHHHc
Q 012319 272 TRELALQVTDHLKEVAK 288 (466)
Q Consensus 272 treLa~Qv~~~l~~l~~ 288 (466)
+..+|.|++..|..++.
T Consensus 66 ~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 66 NKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp SHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 99999999999999964
No 99
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.54 E-value=0.011 Score=60.41 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=53.4
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
-.++.|+.|||||....- .+ . ..+.+|++||++++..+.+.+... +..
T Consensus 163 v~~I~G~aGsGKTt~I~~----~~-~-----------------------~~~~lVlTpT~~aa~~l~~kl~~~----~~~ 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS----RV-N-----------------------FEEDLILVPGRQAAEMIRRRANAS----GII 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHH----HC-C-----------------------TTTCEEEESCHHHHHHHHHHHTTT----SCC
T ss_pred EEEEEcCCCCCHHHHHHH----Hh-c-----------------------cCCeEEEeCCHHHHHHHHHHhhhc----Ccc
Confidence 568899999999965421 11 0 014699999999998887776432 100
Q ss_pred EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHH
Q 012319 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 360 (466)
Q Consensus 294 v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~ 360 (466)
....+-|.|-..++. ... .......++||||||- |++.+....
T Consensus 211 ------------------~~~~~~V~T~dsfL~--~~~---~~~~~~~d~liiDE~s-m~~~~~l~~ 253 (446)
T 3vkw_A 211 ------------------VATKDNVRTVDSFLM--NYG---KGARCQFKRLFIDEGL-MLHTGCVNF 253 (446)
T ss_dssp ------------------CCCTTTEEEHHHHHH--TTT---SSCCCCCSEEEEETGG-GSCHHHHHH
T ss_pred ------------------ccccceEEEeHHhhc--CCC---CCCCCcCCEEEEeCcc-cCCHHHHHH
Confidence 011233666555432 111 1112347899999997 544444433
No 100
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.40 E-value=0.019 Score=51.82 Aligned_cols=18 Identities=17% Similarity=-0.099 Sum_probs=14.6
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-.++.+++|||||.+.+-
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 678899999999966543
No 101
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.36 E-value=0.028 Score=60.17 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=67.4
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.+|.-|.+++..++.-.....++.|+-|.|||.+..+.+-... ..++|.+||.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~--------------------------~~~~vtAP~~~ 228 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA--------------------------GRAIVTAPAKA 228 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS--------------------------SCEEEECSSCC
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH--------------------------hCcEEECCCHH
Confidence 6899999999888652221678899999999976655443221 13699999998
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhc
Q 012319 275 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 354 (466)
Q Consensus 275 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~ 354 (466)
-+..+.+.... .|-+..|..+.. .+...++||||||=.|
T Consensus 229 a~~~l~~~~~~-----------------------------~i~~~~Pd~~~~----------~~~~~dlliVDEAAaI-- 267 (671)
T 2zpa_A 229 STDVLAQFAGE-----------------------------KFRFIAPDALLA----------SDEQADWLVVDEAAAI-- 267 (671)
T ss_dssp SCHHHHHHHGG-----------------------------GCCBCCHHHHHH----------SCCCCSEEEEETGGGS--
T ss_pred HHHHHHHHhhC-----------------------------CeEEeCchhhhh----------CcccCCEEEEEchhcC--
Confidence 76544432211 144456765431 1345889999999755
Q ss_pred cCCHHHHHHHHH
Q 012319 355 NGHFRELQSIID 366 (466)
Q Consensus 355 ~g~~~~l~~Il~ 366 (466)
....+..++.
T Consensus 268 --p~pll~~ll~ 277 (671)
T 2zpa_A 268 --PAPLLHQLVS 277 (671)
T ss_dssp --CHHHHHHHHT
T ss_pred --CHHHHHHHHh
Confidence 4566666664
No 102
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.09 E-value=0.094 Score=47.05 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=55.4
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++|+..|..++..|... ++.+..++|+++.......+ .....|||+| +.+..| +++.
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~G----ldi~ 121 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASKG----LDFP 121 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHTT----CCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----CchhcC----CCcc
Confidence 47999999999999999988876 67888999999876654443 2468999999 344444 7788
Q ss_pred cccEEEec
Q 012319 340 TLSFFVLD 347 (466)
Q Consensus 340 ~l~~lViD 347 (466)
.+.+||.=
T Consensus 122 ~v~~VI~~ 129 (191)
T 2p6n_A 122 AIQHVINY 129 (191)
T ss_dssp CCSEEEES
T ss_pred cCCEEEEe
Confidence 88888763
No 103
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.05 E-value=0.26 Score=46.37 Aligned_cols=16 Identities=25% Similarity=0.220 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||...
T Consensus 66 ~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 7999999999999754
No 104
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.02 E-value=0.069 Score=46.38 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=55.4
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++|+..|..++..|... ++.+..++|+++.......+ .....|||+|. .+..| +++.
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----ld~~ 102 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAARG----IDIE 102 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTTT----CCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----Cchh
Confidence 37999999999999999988775 77899999999876654443 24679999993 34443 7788
Q ss_pred cccEEEecc
Q 012319 340 TLSFFVLDE 348 (466)
Q Consensus 340 ~l~~lViDE 348 (466)
.+.+||.-.
T Consensus 103 ~~~~Vi~~~ 111 (163)
T 2hjv_A 103 NISLVINYD 111 (163)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEeC
Confidence 888888644
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.97 E-value=0.0092 Score=53.52 Aligned_cols=17 Identities=24% Similarity=0.018 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
-+++.|+.|+|||...+
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997654
No 106
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.91 E-value=0.28 Score=43.61 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 40 HLLFSGPPGTGKTATA 55 (226)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999653
No 107
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.81 E-value=0.24 Score=49.50 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+|+.||+|+|||...
T Consensus 150 ~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLA 165 (389)
T ss_dssp EEEEESSTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999654
No 108
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.75 E-value=0.13 Score=46.81 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||...
T Consensus 54 ~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLI 69 (242)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999654
No 109
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.71 E-value=0.15 Score=50.13 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=18.8
Q ss_pred ccEEEecccchhhccC-CHHHHHHHHHhC
Q 012319 341 LSFFVLDEADRMIENG-HFRELQSIIDML 368 (466)
Q Consensus 341 l~~lViDEad~ll~~g-~~~~l~~Il~~l 368 (466)
-.+|||||+|.+.... ....+..++..+
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 4589999999997442 345555666544
No 110
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.68 E-value=0.092 Score=45.60 Aligned_cols=72 Identities=17% Similarity=0.391 Sum_probs=55.0
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++|+..|..++..|... ++.+..++|+++.......+ .....|||||. .+..| +++.
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----~d~~ 97 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDVQ 97 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTT----CCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhcC----CCcc
Confidence 47999999999999999888764 67889999999876654443 24679999993 34443 6788
Q ss_pred cccEEEecc
Q 012319 340 TLSFFVLDE 348 (466)
Q Consensus 340 ~l~~lViDE 348 (466)
.+.+||.-.
T Consensus 98 ~~~~Vi~~~ 106 (165)
T 1fuk_A 98 QVSLVINYD 106 (165)
T ss_dssp SCSEEEESS
T ss_pred cCCEEEEeC
Confidence 888887643
No 111
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.63 E-value=0.17 Score=46.03 Aligned_cols=70 Identities=20% Similarity=0.350 Sum_probs=55.1
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++|+.-+..++..|... ++.+..++|+++...+...+. +..+|||||. .+..| +++.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----idi~ 98 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAARG----LDIP 98 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTCS----SSCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhcC----CCCc
Confidence 37999999999999999988876 678899999999876654443 4678999993 34443 7788
Q ss_pred cccEEEe
Q 012319 340 TLSFFVL 346 (466)
Q Consensus 340 ~l~~lVi 346 (466)
.+.+||.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 8888874
No 112
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.58 E-value=0.041 Score=63.65 Aligned_cols=72 Identities=29% Similarity=0.314 Sum_probs=53.5
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
.+|+-|.++|..- ++ +++|.|.-|||||.+.+--++..+... ..+...-++|+|++|+.
T Consensus 10 ~~t~eQ~~~i~~~---~~-~~~v~a~AGSGKT~vl~~ri~~ll~~~-----------------~~~~~~~~il~~Tft~~ 68 (1232)
T 3u4q_A 10 TWTDDQWNAIVST---GQ-DILVAAAAGSGKTAVLVERMIRKITAE-----------------ENPIDVDRLLVVTFTNA 68 (1232)
T ss_dssp CCCHHHHHHHHCC---SS-CEEEEECTTCCHHHHHHHHHHHHHSCS-----------------SSCCCGGGEEEECSSHH
T ss_pred CCCHHHHHHHhCC---CC-CEEEEecCCCcHHHHHHHHHHHHHhcC-----------------CCCCCccceEEEeccHH
Confidence 6899999998542 33 999999999999988766666555321 01122347999999999
Q ss_pred HHHHHHHHHHHHH
Q 012319 275 LALQVTDHLKEVA 287 (466)
Q Consensus 275 La~Qv~~~l~~l~ 287 (466)
.|..+.+.+....
T Consensus 69 aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 69 SAAEMKHRIAEAL 81 (1232)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887743
No 113
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.56 E-value=0.073 Score=46.76 Aligned_cols=71 Identities=17% Similarity=0.307 Sum_probs=54.8
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.++++..|..++..|... ++.+..++|+++.......+. +..+|||||. .+..| +++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G----id~ 100 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCARG----IDV 100 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCTT----TCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhcC----CCc
Confidence 348999999999999998888764 778999999998766544432 4689999994 33333 778
Q ss_pred CcccEEEe
Q 012319 339 HTLSFFVL 346 (466)
Q Consensus 339 ~~l~~lVi 346 (466)
..+.+||.
T Consensus 101 ~~~~~Vi~ 108 (175)
T 2rb4_A 101 KQVTIVVN 108 (175)
T ss_dssp TTEEEEEE
T ss_pred ccCCEEEE
Confidence 88998885
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.15 E-value=0.049 Score=46.90 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.+|+|+|||...
T Consensus 38 ~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLL 53 (149)
T ss_dssp EEEEESSSTTTTCHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 8999999999999654
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.12 E-value=0.14 Score=49.69 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||...
T Consensus 39 ~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLL 54 (324)
T ss_dssp SEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 8999999999999654
No 116
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.07 E-value=0.22 Score=48.07 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=17.9
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHh
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDM 367 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~ 367 (466)
....+|||||+|.|........+..+++.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~ 132 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEA 132 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHh
Confidence 35689999999988512233444444443
No 117
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.04 E-value=0.074 Score=48.05 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=13.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-.++.|+.|||||...
T Consensus 22 l~fiyG~MgsGKTt~L 37 (195)
T 1w4r_A 22 IQVILGPMFSGKSTEL 37 (195)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6788999999999443
No 118
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.83 E-value=0.39 Score=47.20 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||...
T Consensus 47 ~vll~G~~G~GKT~la 62 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVS 62 (384)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 7999999999999654
No 119
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.80 E-value=0.63 Score=41.74 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999653
No 120
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=93.67 E-value=0.22 Score=43.59 Aligned_cols=72 Identities=17% Similarity=0.280 Sum_probs=55.0
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++++..|..++..|... ++.+..++|+++.......+. ....|||||. .+..| +++.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----ldi~ 98 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG----MDIE 98 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCSTT----CCGG
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chhcC----cchh
Confidence 37999999999999999988775 678889999998766544432 4689999995 23333 6778
Q ss_pred cccEEEecc
Q 012319 340 TLSFFVLDE 348 (466)
Q Consensus 340 ~l~~lViDE 348 (466)
.+.+||.=.
T Consensus 99 ~~~~Vi~~d 107 (172)
T 1t5i_A 99 RVNIAFNYD 107 (172)
T ss_dssp GCSEEEESS
T ss_pred hCCEEEEEC
Confidence 888888643
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.63 E-value=0.17 Score=51.58 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||...
T Consensus 132 ~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999654
No 122
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.23 E-value=0.45 Score=46.40 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=22.9
Q ss_pred CcHHHHHHHHHHH---hcCC--ccEEEecCCCCchhHHH
Q 012319 196 PTPIQKACIPAAA---HQGK--VDIIGAAETGSGKTLAF 229 (466)
Q Consensus 196 pt~iQ~~~i~~~l---~~~~--~dvl~~a~TGSGKTl~~ 229 (466)
+.|+|..++..+. ..++ +.+++.||.|+|||...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 3577777665443 3332 14899999999999655
No 123
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.12 E-value=0.096 Score=49.60 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=29.6
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHH-HhcCCccEEEecCCCCchhHHH
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAA-AHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ-~~~i~~~-l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..|.++.-....++.+...-. .+++ ...+..+ +.... .+++.||+|+|||...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~-~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPK-GILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCS-EEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCC-eEEEECCCCCcHHHHH
Confidence 567777666666666654310 1111 1111111 12233 8999999999999654
No 124
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.12 E-value=0.15 Score=46.75 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=49.9
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
-.+++++.|||||...+-- +.+... .+.+++|+.|...--. -...++...++.
T Consensus 30 I~vitG~M~sGKTT~Llr~-~~r~~~----------------------~g~kvli~kp~~D~R~----~~~~I~Sr~G~~ 82 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRR-LRRGIY----------------------AKQKVVVFKPAIDDRY----HKEKVVSHNGNA 82 (219)
T ss_dssp EEEEEECTTSCHHHHHHHH-HHHHHH----------------------TTCCEEEEEEC---------------CBTTBC
T ss_pred EEEEECCCCCCHHHHHHHH-HHHHHH----------------------cCCceEEEEeccCCcc----hhhhHHHhcCCc
Confidence 6788999999999655333 333211 1347899988654110 001122222322
Q ss_pred EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhccCCHHHHHHHH
Q 012319 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 365 (466)
Q Consensus 294 v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~Il 365 (466)
. ..+.|..+.-|+..+ ...+.+|+||||..+- ......+..+.
T Consensus 83 ~-------------------~a~~v~~~~di~~~i---------~~~~dvV~IDEaQFf~-~~~v~~l~~la 125 (219)
T 3e2i_A 83 I-------------------EAINISKASEIMTHD---------LTNVDVIGIDEVQFFD-DEIVSIVEKLS 125 (219)
T ss_dssp C-------------------EEEEESSGGGGGGSC---------CTTCSEEEECCGGGSC-THHHHHHHHHH
T ss_pred e-------------------eeEEeCCHHHHHHHH---------hcCCCEEEEechhcCC-HHHHHHHHHHH
Confidence 1 235555554443322 2467899999999764 33444444444
No 125
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.11 E-value=0.23 Score=45.98 Aligned_cols=22 Identities=14% Similarity=-0.052 Sum_probs=16.1
Q ss_pred cEEEecCCCCchhHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQ 235 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~ 235 (466)
-.+++|+.|||||.+.+--+.+
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r 42 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRR 42 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6688999999999665444433
No 126
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=93.11 E-value=0.12 Score=46.04 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=45.3
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.++|+..|..++..|... ++.+..++|+++.......+ .....|||||. .+..| +++
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----ldi 112 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LDI 112 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC---------------CC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhcC----CCc
Confidence 347999999999999999888764 67888999998765433222 35789999994 23333 677
Q ss_pred CcccEEEe
Q 012319 339 HTLSFFVL 346 (466)
Q Consensus 339 ~~l~~lVi 346 (466)
..+.+||.
T Consensus 113 ~~~~~VI~ 120 (185)
T 2jgn_A 113 SNVKHVIN 120 (185)
T ss_dssp CSBSEEEE
T ss_pred ccCCEEEE
Confidence 88888876
No 127
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.06 E-value=0.13 Score=49.18 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||...
T Consensus 69 ~vll~G~~GtGKT~la 84 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVA 84 (309)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999664
No 128
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.06 E-value=0.18 Score=49.62 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999654
No 129
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.06 E-value=0.21 Score=48.95 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 47 ~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999654
No 130
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.00 E-value=0.16 Score=46.48 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=24.8
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 274 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptre 274 (466)
-.+++++.|||||.+.+--+.+... .+.+++|+.|...
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~-----------------------~g~kVli~k~~~d 67 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQF-----------------------AKQHAIVFKPCID 67 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH-----------------------TTCCEEEEECC--
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-----------------------CCCEEEEEEeccC
Confidence 5578999999999766444443321 1447999998764
No 131
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.82 E-value=0.39 Score=48.82 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=33.9
Q ss_pred CcccEEEecccchhh---ccCCHHHHHHHHHhCCCCCCCCCCCccccchhhhhcccCCCCceEEEEeeecCC-CHHHHHH
Q 012319 339 HTLSFFVLDEADRMI---ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL-SADFRKK 414 (466)
Q Consensus 339 ~~l~~lViDEad~ll---~~g~~~~l~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ll~SATl~~-~~~~~~~ 414 (466)
...++||||.+-++- +..+...+..|+..+. +..-+++++|+.+. ..+.++.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~------------------------pd~vlLVlDa~~gq~a~~~a~~ 233 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK------------------------PDDVILVIDASIGQKAYDLASR 233 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC------------------------CSEEEEEEEGGGGGGGHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC------------------------CcceEEEEeCccchHHHHHHHH
Confidence 467899999998642 3445666777766664 34567788888752 2344444
Q ss_pred Hh
Q 012319 415 LK 416 (466)
Q Consensus 415 l~ 416 (466)
+.
T Consensus 234 f~ 235 (433)
T 3kl4_A 234 FH 235 (433)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 132
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.54 E-value=0.29 Score=46.99 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=29.2
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH-HhcCCccEEEecCCCCchhHHH
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPAA-AHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~-~~i~~~-l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
...|.++.-...+.+.|...-. .|+.. ..+..+ +..+. .+++.||+|+|||+..
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~-~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSK-GVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCS-EEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCc-eEEEECCCCcCHHHHH
Confidence 3567777666666666554200 01110 011111 12233 7999999999999654
No 133
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=92.25 E-value=0.37 Score=46.45 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=53.8
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++|+.-+..++..|... ++.+..++|+++...+...+ .+..+|||||. .+..| +++.
T Consensus 29 ~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~G----idi~ 95 (300)
T 3i32_A 29 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAARG----LDIP 95 (300)
T ss_dssp SSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTCS----TTCC
T ss_pred CCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhcC----cccc
Confidence 37999999999998888877654 78899999999876655444 34689999994 34433 7788
Q ss_pred cccEEEe
Q 012319 340 TLSFFVL 346 (466)
Q Consensus 340 ~l~~lVi 346 (466)
.+.+||.
T Consensus 96 ~v~~VI~ 102 (300)
T 3i32_A 96 QVDLVVH 102 (300)
T ss_dssp CCSEEEE
T ss_pred ceeEEEE
Confidence 8888874
No 134
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.22 E-value=0.52 Score=46.76 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=56.6
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCcccc
Q 012319 262 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 337 (466)
Q Consensus 262 ~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~ 337 (466)
.+.++||.++|+..|..+++.|... ++.+..++|+.+.......+ ....+|||||. .+..| ++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----id 341 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LD 341 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTT----SC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcC----CC
Confidence 3558999999999999999988774 67889999999876554443 24689999995 45554 77
Q ss_pred CCcccEEEe
Q 012319 338 LHTLSFFVL 346 (466)
Q Consensus 338 l~~l~~lVi 346 (466)
+..+.+||.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 888988875
No 135
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.85 E-value=1.4 Score=45.77 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=59.3
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.++|+.-|..++..|..... .++.+..++|++........+. ...+|||||. .+..| +++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G----iDi 408 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG----MDF 408 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS----CCC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhcC----CCc
Confidence 45899999999999999999988754 3678889999998766544432 5789999995 44444 778
Q ss_pred CcccEEEeccc
Q 012319 339 HTLSFFVLDEA 349 (466)
Q Consensus 339 ~~l~~lViDEa 349 (466)
..+.+||.-..
T Consensus 409 p~v~~VI~~~~ 419 (563)
T 3i5x_A 409 PNVHEVLQIGV 419 (563)
T ss_dssp TTCCEEEEESC
T ss_pred ccCCEEEEECC
Confidence 88988886543
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.35 E-value=0.5 Score=46.02 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=20.9
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
...++|||||+|. ++......+..++...+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 4567999999999 45555666666666554
No 137
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.31 E-value=0.45 Score=47.03 Aligned_cols=70 Identities=20% Similarity=0.355 Sum_probs=55.7
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++++.-|..++..|... ++.+..++|+++...+...+ .+..+|||||. .+..| +++.
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idip 333 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDVE 333 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTSS----CCCT
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccccC----CCcc
Confidence 48999999999999999998875 67888899999876654444 24689999995 44444 7888
Q ss_pred cccEEEe
Q 012319 340 TLSFFVL 346 (466)
Q Consensus 340 ~l~~lVi 346 (466)
.+.+||.
T Consensus 334 ~~~~Vi~ 340 (412)
T 3fht_A 334 QVSVVIN 340 (412)
T ss_dssp TEEEEEE
T ss_pred CCCEEEE
Confidence 9998884
No 138
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.21 E-value=0.56 Score=42.86 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=15.3
Q ss_pred cCCccEEEecCCCCchhHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~ 229 (466)
.+. -+++.|++|+|||...
T Consensus 22 ~G~-~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 22 ERN-VVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTC-EEEEEECTTSSHHHHH
T ss_pred CCc-EEEEECCCCCCHHHHH
Confidence 344 7899999999999654
No 139
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.19 E-value=0.63 Score=47.49 Aligned_cols=26 Identities=38% Similarity=0.364 Sum_probs=18.1
Q ss_pred cCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.+. -+++.|++|+|||.. ++-+...+
T Consensus 202 ~G~-liiI~G~pG~GKTtl-~l~ia~~~ 227 (454)
T 2r6a_A 202 RSD-LIIVAARPSVGKTAF-ALNIAQNV 227 (454)
T ss_dssp TTC-EEEEECCTTSCHHHH-HHHHHHHH
T ss_pred CCC-EEEEECCCCCCHHHH-HHHHHHHH
Confidence 344 788999999999954 44444444
No 140
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.13 E-value=1.1 Score=43.31 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
++++.||+|+|||...
T Consensus 60 ~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999654
No 141
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.05 E-value=1.7 Score=45.50 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=59.3
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.++|+.-|..++..|..... .++.+..++|+++.......+ ....+|||||. .+..| +++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~G----iDi 357 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG----MDF 357 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS----CCC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhcC----CCc
Confidence 45899999999999999999988653 367888999999876654443 35789999995 34444 778
Q ss_pred CcccEEEeccc
Q 012319 339 HTLSFFVLDEA 349 (466)
Q Consensus 339 ~~l~~lViDEa 349 (466)
..+.+||.-..
T Consensus 358 p~v~~VI~~~~ 368 (579)
T 3sqw_A 358 PNVHEVLQIGV 368 (579)
T ss_dssp TTCCEEEEESC
T ss_pred ccCCEEEEcCC
Confidence 88998886554
No 142
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.91 E-value=0.48 Score=46.55 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=57.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.++++..|..+++.|... ++.+..++|+++.......+. ....|||||. .+..| +++
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----idi 316 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG----MDI 316 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCSSC----BCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhhcC----CCc
Confidence 358999999999999999988775 678889999998765544433 4679999994 33333 788
Q ss_pred CcccEEEeccc
Q 012319 339 HTLSFFVLDEA 349 (466)
Q Consensus 339 ~~l~~lViDEa 349 (466)
..+++||.-..
T Consensus 317 ~~~~~Vi~~~~ 327 (391)
T 1xti_A 317 ERVNIAFNYDM 327 (391)
T ss_dssp TTEEEEEESSC
T ss_pred ccCCEEEEeCC
Confidence 88999987554
No 143
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.90 E-value=0.95 Score=44.19 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.7
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||.|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999654
No 144
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=90.73 E-value=0.56 Score=45.94 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=58.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.++++.-|..++..|... ++.+..++|+++...+...+ .+..+|||||. .+..| +++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi 309 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARG----IDI 309 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSS----CCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcC----CCc
Confidence 458999999999999999988775 67888899999876654444 24678999995 44444 788
Q ss_pred CcccEEEecccch
Q 012319 339 HTLSFFVLDEADR 351 (466)
Q Consensus 339 ~~l~~lViDEad~ 351 (466)
..+.+||.-....
T Consensus 310 p~~~~Vi~~~~p~ 322 (395)
T 3pey_A 310 PTVSMVVNYDLPT 322 (395)
T ss_dssp TTEEEEEESSCCB
T ss_pred ccCCEEEEcCCCC
Confidence 8999998765543
No 145
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=90.60 E-value=1.8 Score=46.40 Aligned_cols=77 Identities=23% Similarity=0.429 Sum_probs=60.7
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.++|+..|..++..|... ++.+..++|+.........+ .+..+|+|||. .+..| +++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~G----lDi 511 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREG----LDI 511 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCSTT----CCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhCC----ccc
Confidence 348999999999999999888875 67888899998876654443 24689999995 34444 788
Q ss_pred CcccEEEecccchh
Q 012319 339 HTLSFFVLDEADRM 352 (466)
Q Consensus 339 ~~l~~lViDEad~l 352 (466)
..+++||+=++|..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 89999999999854
No 146
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=90.41 E-value=0.59 Score=46.12 Aligned_cols=72 Identities=8% Similarity=0.221 Sum_probs=55.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.++++..|..+++.|... ++.+..++|+++...+...+ .....|||||. .+..| +++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G----idi 324 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTRG----IDI 324 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSSS----CCC
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccccC----CCc
Confidence 348999999999999999999876 67888899999876654433 24679999994 33333 778
Q ss_pred CcccEEEec
Q 012319 339 HTLSFFVLD 347 (466)
Q Consensus 339 ~~l~~lViD 347 (466)
..+.+||.-
T Consensus 325 p~~~~Vi~~ 333 (400)
T 1s2m_A 325 QAVNVVINF 333 (400)
T ss_dssp TTEEEEEES
T ss_pred cCCCEEEEe
Confidence 888888753
No 147
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.37 E-value=0.5 Score=42.60 Aligned_cols=16 Identities=38% Similarity=0.360 Sum_probs=13.7
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+++.||+|+|||...
T Consensus 25 ~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFS 40 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 7889999999999654
No 148
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.37 E-value=0.44 Score=46.17 Aligned_cols=16 Identities=31% Similarity=0.328 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 57 ~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLA 72 (338)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 8999999999999654
No 149
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.32 E-value=0.58 Score=47.68 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
.+++++++|+|||....
T Consensus 102 vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 67889999999997653
No 150
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.30 E-value=0.48 Score=45.85 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=30.0
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhc---CCccEEEecCCCCchhHHH
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ---GKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~---~~~dvl~~a~TGSGKTl~~ 229 (466)
...|.++.-...+.+.|...-. .|.. .|.++.. ....++++||+|+|||...
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3568888777777776655310 0110 1111111 1127999999999999654
No 151
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=90.21 E-value=0.48 Score=45.86 Aligned_cols=73 Identities=16% Similarity=0.404 Sum_probs=55.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.++++.-|..+++.|... ++.+..++|+.+.......+ ....+|||||. .+..| +++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id~ 304 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG----IDV 304 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH----CCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----CCc
Confidence 457999999999999999988875 67888999999876554433 24679999994 22222 667
Q ss_pred CcccEEEecc
Q 012319 339 HTLSFFVLDE 348 (466)
Q Consensus 339 ~~l~~lViDE 348 (466)
..+.+||.-.
T Consensus 305 ~~~~~Vi~~~ 314 (367)
T 1hv8_A 305 NDLNCVINYH 314 (367)
T ss_dssp SCCSEEEESS
T ss_pred ccCCEEEEec
Confidence 8888887643
No 152
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.89 E-value=0.64 Score=49.26 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=54.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.++||.-|.+++..|... ++.+..++|+++.......+ ....+|||||. .+..| +++
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~~~G----ID~ 333 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AFGMG----IDK 333 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TSCTT----CCC
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhhcC----CCc
Confidence 457999999999999999998875 77899999999876654433 35689999994 23333 677
Q ss_pred CcccEEEe
Q 012319 339 HTLSFFVL 346 (466)
Q Consensus 339 ~~l~~lVi 346 (466)
..+++||.
T Consensus 334 p~V~~VI~ 341 (591)
T 2v1x_A 334 PDVRFVIH 341 (591)
T ss_dssp SCEEEEEE
T ss_pred ccccEEEE
Confidence 78888774
No 153
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.65 E-value=0.68 Score=45.60 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||+..
T Consensus 86 ~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLA 101 (355)
T ss_dssp CEEEECSTTSCHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 7999999999999654
No 154
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=89.49 E-value=0.73 Score=45.69 Aligned_cols=70 Identities=19% Similarity=0.394 Sum_probs=54.9
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++++..|..+++.|... ++.+..++|+.+.......+ .+...|||||. .+..| +++.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi~ 343 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWARG----LDVP 343 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSSS----CCCT
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhCc----CCcc
Confidence 38999999999999999888775 67888899999876554443 24689999995 44444 7788
Q ss_pred cccEEEe
Q 012319 340 TLSFFVL 346 (466)
Q Consensus 340 ~l~~lVi 346 (466)
.+.+||.
T Consensus 344 ~v~~Vi~ 350 (410)
T 2j0s_A 344 QVSLIIN 350 (410)
T ss_dssp TEEEEEE
T ss_pred cCCEEEE
Confidence 8988885
No 155
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=89.07 E-value=0.067 Score=46.82 Aligned_cols=70 Identities=20% Similarity=0.379 Sum_probs=50.8
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++++..|..++..|... ++.+..++|+++.......+. ....|||||. .+..| +++.
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----id~~ 97 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAARG----IDIP 97 (170)
Confidence 47999999999999988888765 678888999887655433332 3578999993 33333 6677
Q ss_pred cccEEEe
Q 012319 340 TLSFFVL 346 (466)
Q Consensus 340 ~l~~lVi 346 (466)
.+.+||.
T Consensus 98 ~~~~Vi~ 104 (170)
T 2yjt_D 98 DVSHVFN 104 (170)
Confidence 7777765
No 156
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=89.27 E-value=0.93 Score=45.76 Aligned_cols=69 Identities=16% Similarity=0.294 Sum_probs=55.0
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccCCc
Q 012319 265 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHT 340 (466)
Q Consensus 265 ~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 340 (466)
++||.++|+.-|..+++.|... ++.+..++|+.........+. ....|||||. .+..| +++..
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~rG----lDi~~ 368 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASRG----LDIKN 368 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTSS----CCCTT
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhCC----CCccc
Confidence 3999999999999999888765 778899999998766554443 4689999996 44444 78889
Q ss_pred ccEEEe
Q 012319 341 LSFFVL 346 (466)
Q Consensus 341 l~~lVi 346 (466)
+.+||.
T Consensus 369 v~~VI~ 374 (434)
T 2db3_A 369 IKHVIN 374 (434)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 998886
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=89.27 E-value=3.1 Score=39.40 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999654
No 158
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.67 E-value=0.83 Score=43.73 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||...
T Consensus 40 ~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCEEECCTTCCCHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 8999999999999654
No 159
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.25 E-value=1 Score=46.80 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=53.4
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++||.-|..+++.|... ++.+..++|+++.......+ ....+|||||. .+..| +++.
T Consensus 237 ~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~~~G----iD~p 303 (523)
T 1oyw_A 237 KSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AFGMG----INKP 303 (523)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TSCTT----TCCT
T ss_pred CcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhhCC----CCcc
Confidence 46999999999999999998875 67889999999876544333 35689999995 23333 6677
Q ss_pred cccEEEe
Q 012319 340 TLSFFVL 346 (466)
Q Consensus 340 ~l~~lVi 346 (466)
.+++||.
T Consensus 304 ~v~~VI~ 310 (523)
T 1oyw_A 304 NVRFVVH 310 (523)
T ss_dssp TCCEEEE
T ss_pred CccEEEE
Confidence 7887775
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.22 E-value=1.2 Score=42.37 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
+++++||.|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999654
No 161
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.20 E-value=1.1 Score=45.68 Aligned_cols=23 Identities=43% Similarity=0.362 Sum_probs=16.9
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
-+++.|++|+|||. |++.+..++
T Consensus 202 l~ii~G~pg~GKT~-lal~ia~~~ 224 (444)
T 2q6t_A 202 LNIIAARPAMGKTA-FALTIAQNA 224 (444)
T ss_dssp EEEEEECTTSCHHH-HHHHHHHHH
T ss_pred EEEEEeCCCCCHHH-HHHHHHHHH
Confidence 67899999999994 445444444
No 162
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.14 E-value=2.1 Score=41.22 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=17.4
Q ss_pred cCCccEEEecCCCCchhHHHHHHHHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAFGLPIMQR 236 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~~lpil~~ 236 (466)
.+. -++++|++|+|||.. ++.+..+
T Consensus 67 ~G~-l~li~G~pG~GKTtl-~l~ia~~ 91 (315)
T 3bh0_A 67 RRN-FVLIAARPSMGKTAF-ALKQAKN 91 (315)
T ss_dssp TTC-EEEEECCTTSSHHHH-HHHHHHH
T ss_pred CCc-EEEEEeCCCCCHHHH-HHHHHHH
Confidence 344 789999999999944 3444433
No 163
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=87.53 E-value=1.6 Score=46.91 Aligned_cols=76 Identities=22% Similarity=0.356 Sum_probs=59.2
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH---h-cCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---K-ARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l---~-~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++|+..|..++..|... ++.+..++|+.+.......+ . +..+|+|||. .+..| +++.
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~~G----lDip 506 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLREG----LDIP 506 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCTT----CCCT
T ss_pred CEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhhcC----ccCC
Confidence 48999999999999999888875 67888899998876654443 2 4689999994 23333 7788
Q ss_pred cccEEEecccchh
Q 012319 340 TLSFFVLDEADRM 352 (466)
Q Consensus 340 ~l~~lViDEad~l 352 (466)
.+++||+=+++..
T Consensus 507 ~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 507 EVSLVAILDADKE 519 (664)
T ss_dssp TEEEEEETTTTSC
T ss_pred CCCEEEEeCCccc
Confidence 9999999888753
No 164
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.52 E-value=13 Score=35.25 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=19.2
Q ss_pred cEEEecccchhhc---cCCHHHHHHHHHhC
Q 012319 342 SFFVLDEADRMIE---NGHFRELQSIIDML 368 (466)
Q Consensus 342 ~~lViDEad~ll~---~g~~~~l~~Il~~l 368 (466)
-+|||||+|.+.. ..+...+..++...
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~ 168 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNL 168 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHC
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcC
Confidence 4789999999864 35666666666543
No 165
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=87.20 E-value=0.81 Score=47.27 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||+..
T Consensus 240 ~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIA 255 (489)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred cEEEECcCCCCHHHHH
Confidence 7999999999999754
No 166
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.11 E-value=0.85 Score=41.70 Aligned_cols=31 Identities=13% Similarity=0.038 Sum_probs=21.8
Q ss_pred CcccEEEecccchhhc-----cCCHHHHHHHHHhCC
Q 012319 339 HTLSFFVLDEADRMIE-----NGHFRELQSIIDMLP 369 (466)
Q Consensus 339 ~~l~~lViDEad~ll~-----~g~~~~l~~Il~~l~ 369 (466)
...++||+||.-.+++ ......+..++..+.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~ 169 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL 169 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 4678999999998886 344444666666653
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.75 E-value=2.7 Score=41.39 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=13.7
Q ss_pred cEEE--ecCCCCchhHHH
Q 012319 214 DIIG--AAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~--~a~TGSGKTl~~ 229 (466)
.+++ +|+.|+|||...
T Consensus 52 ~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEECTTCCSSSHHHHH
T ss_pred EEEEeCcCcCCCCHHHHH
Confidence 6888 899999999654
No 168
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.73 E-value=2.4 Score=38.11 Aligned_cols=24 Identities=29% Similarity=0.119 Sum_probs=20.0
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.|++...+|.|||.+.+--++..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~ 53 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAV 53 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999998866666655
No 169
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=86.26 E-value=0.82 Score=52.35 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=61.4
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.+++|++|+++-+..+++.|..... ++++..++|+++.......+ .+..+|||||. .+..| +++
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e~G----iDi 880 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----IDI 880 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGGG----SCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cceee----ecc
Confidence 45899999999999999999988743 56888999999876554433 35789999995 44444 789
Q ss_pred CcccEEEecccch
Q 012319 339 HTLSFFVLDEADR 351 (466)
Q Consensus 339 ~~l~~lViDEad~ 351 (466)
..+.+||+..++.
T Consensus 881 p~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 881 PTANTIIIERADH 893 (1151)
T ss_dssp TTEEEEEETTTTS
T ss_pred cCCcEEEEeCCCC
Confidence 9999999888764
No 170
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=85.91 E-value=0.68 Score=47.03 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=47.6
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccE
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 343 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~ 343 (466)
.++||.+|+++-|..+++.|... ++.+..++|............+..+|||||. .+..| +++. +.+
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~G----iDip-v~~ 243 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEMG----ANLC-VER 243 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STTCC----TTCC-CSE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhee----eccC-ceE
Confidence 47999999999999999998875 6788889985433333333345789999995 34444 6777 888
Q ss_pred EE
Q 012319 344 FV 345 (466)
Q Consensus 344 lV 345 (466)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 171
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=85.21 E-value=1.2 Score=44.62 Aligned_cols=74 Identities=22% Similarity=0.409 Sum_probs=52.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEC--------CCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG--------GMSTEKQERLL----KARPELVVGTPGRLWELMSG 330 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~g--------g~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~ 330 (466)
+.++||.++++..+..+++.|... ++.+..++| +++...+...+ .+...|||+|. .+..
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~~ 431 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGEE 431 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGGG
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cccc
Confidence 458999999999999999888876 678888998 65543332222 24679999993 2333
Q ss_pred CCCccccCCcccEEEeccc
Q 012319 331 GEKHLVELHTLSFFVLDEA 349 (466)
Q Consensus 331 ~~~~~~~l~~l~~lViDEa 349 (466)
| +++..+.+||+=..
T Consensus 432 G----ldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 432 G----LDVPEVDLVVFYEP 446 (494)
T ss_dssp G----GGSTTCCEEEESSC
T ss_pred C----CCchhCCEEEEeCC
Confidence 3 78888988886544
No 172
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=84.75 E-value=3.7 Score=39.40 Aligned_cols=17 Identities=18% Similarity=-0.052 Sum_probs=14.2
Q ss_pred ccEEEecCCCCchhHHH
Q 012319 213 VDIIGAAETGSGKTLAF 229 (466)
Q Consensus 213 ~dvl~~a~TGSGKTl~~ 229 (466)
+.+++.||.|+|||.+.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 19 ISILINGEDLSYPREVS 35 (305)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36899999999998654
No 173
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.53 E-value=0.73 Score=45.19 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=18.3
Q ss_pred hcCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
..+. -+++.|++|+|||.. ++-+..++
T Consensus 44 ~~G~-LiiIaG~pG~GKTt~-al~ia~~~ 70 (338)
T 4a1f_A 44 NKGS-LVIIGARPSMGKTSL-MMNMVLSA 70 (338)
T ss_dssp CTTC-EEEEEECTTSCHHHH-HHHHHHHH
T ss_pred CCCc-EEEEEeCCCCCHHHH-HHHHHHHH
Confidence 3444 688999999999954 44444444
No 174
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.48 E-value=0.73 Score=38.85 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=16.3
Q ss_pred hcCCccEEEecCCCCchhHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+. +|++.|++|+|||...
T Consensus 22 ~~~~-~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDI-AVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCS-CEEEESSTTSSHHHHH
T ss_pred CCCC-CEEEECCCCCCHHHHH
Confidence 3444 9999999999999765
No 175
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.74 E-value=0.76 Score=38.69 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=16.0
Q ss_pred hcCCccEEEecCCCCchhHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~ 229 (466)
.... +|+++|++|+|||...
T Consensus 25 ~~~~-~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTS-PVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSS-CEEEEEETTCCHHHHH
T ss_pred CCCC-cEEEECCCCccHHHHH
Confidence 3444 8999999999999654
No 176
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.69 E-value=4.2 Score=38.81 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=14.9
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+++.+++|+|||.....
T Consensus 107 vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 788899999999976543
No 177
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.18 E-value=3.6 Score=38.55 Aligned_cols=22 Identities=18% Similarity=0.060 Sum_probs=16.8
Q ss_pred hcCCccEEEecCCCCchhHHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~l 231 (466)
..+. -+++.||+|+|||.....
T Consensus 28 ~~G~-i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 28 VAGT-VGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp ETTS-EEEEEESTTSSHHHHHHH
T ss_pred cCCC-EEEEEcCCCCCHHHHHHH
Confidence 4454 789999999999965433
No 178
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.87 E-value=1.3 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=18.6
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
++++.|+||||||..+ .+++..++
T Consensus 55 h~~i~G~tGsGKs~~~-~~li~~~~ 78 (437)
T 1e9r_A 55 HLLVNGATGTGKSVLL-RELAYTGL 78 (437)
T ss_dssp CEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHH
Confidence 9999999999999874 44554444
No 179
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=81.82 E-value=2.2 Score=47.23 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.0
Q ss_pred CccEEEecCCCCchhHHH
Q 012319 212 KVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 212 ~~dvl~~a~TGSGKTl~~ 229 (466)
..+++++||+|+|||...
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 348999999999999654
No 180
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=81.73 E-value=3.7 Score=44.82 Aligned_cols=75 Identities=12% Similarity=0.222 Sum_probs=56.1
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHH-------cCCCcEEEEEECCCCHHHHHHHHhc---------CCcEEEeCcHHHHH
Q 012319 263 HLRALIITPTRELALQVTDHLKEVA-------KGINVRVVPIVGGMSTEKQERLLKA---------RPELVVGTPGRLWE 326 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~-------~~~~~~v~~~~gg~~~~~~~~~l~~---------~~dIiV~TP~~L~~ 326 (466)
+.++||.+|++.-|..++..|...+ ...++.+..++|+.+...+...+.. ...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 3489999999999999998887632 2347889999999998877665542 458999995
Q ss_pred HHhCCCCccccCCcccEEEe
Q 012319 327 LMSGGEKHLVELHTLSFFVL 346 (466)
Q Consensus 327 ~l~~~~~~~~~l~~l~~lVi 346 (466)
.+..+ +++..+.+||-
T Consensus 378 iae~G----idIp~v~~VId 393 (773)
T 2xau_A 378 IAETS----LTIDGIVYVVD 393 (773)
T ss_dssp HHHHT----CCCTTEEEEEE
T ss_pred HHHhC----cCcCCeEEEEe
Confidence 23333 67788887663
No 181
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=81.73 E-value=4.5 Score=41.60 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=36.8
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHc
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 288 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~ 288 (466)
.+.+.+-||||||++..-- +... +..+|||+|+...|.|+++.|..++.
T Consensus 16 ~~~l~g~~gs~ka~~~a~l-~~~~-------------------------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEI-AERH-------------------------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp EEEEECCCTTHHHHHHHHH-HHHS-------------------------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred eEEEeCCCchHHHHHHHHH-HHHh-------------------------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 6788999999999754221 1111 11389999999999999999998854
No 182
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=81.15 E-value=1.5 Score=45.52 Aligned_cols=41 Identities=24% Similarity=0.120 Sum_probs=28.3
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 186 KSIYRLGFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 186 ~~l~~~g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..|...|. +++.+..-+...+..+. .++++||||||||...
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~-~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKF-SAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTC-CEEEEESTTSSHHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCC-EEEEECCCCCCHHHHH
Confidence 34555663 34555555656556776 8999999999999653
No 183
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=80.87 E-value=1.7 Score=43.83 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=41.4
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCc
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 321 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP 321 (466)
.++||++|++.-|..+++.|... ++++..++|+...........+..+|||||.
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 37999999999999999988876 6788999987433222233345789999995
No 184
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.85 E-value=2.4 Score=50.97 Aligned_cols=31 Identities=23% Similarity=0.053 Sum_probs=21.6
Q ss_pred HHHHHh-----cCCccEEEecCCCCchhHHHHHHHHH
Q 012319 204 IPAAAH-----QGKVDIIGAAETGSGKTLAFGLPIMQ 235 (466)
Q Consensus 204 i~~~l~-----~~~~dvl~~a~TGSGKTl~~~lpil~ 235 (466)
+..++. .+. .+++++|+|+|||...+..+.+
T Consensus 1415 LD~lLG~GGi~~g~-~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGR-IVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp HHHHHSSSSEETTS-EEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhcCCCCccCCe-EEEEECCCCCCHHHHHHHHHHH
Confidence 555544 244 9999999999999766444433
No 185
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=80.60 E-value=2.5 Score=40.16 Aligned_cols=70 Identities=11% Similarity=0.257 Sum_probs=50.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.+++++.+..+++.|. .+..++|+.+.......+. +..+|||||. .+..| +++
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id~ 282 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VASRG----LDI 282 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHHTT----CCC
T ss_pred CCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccccC----CCc
Confidence 4579999999998887766554 4567889988766544442 4689999994 45554 778
Q ss_pred CcccEEEeccc
Q 012319 339 HTLSFFVLDEA 349 (466)
Q Consensus 339 ~~l~~lViDEa 349 (466)
..+.+||.-..
T Consensus 283 ~~~~~Vi~~~~ 293 (337)
T 2z0m_A 283 PLVEKVINFDA 293 (337)
T ss_dssp CCBSEEEESSC
T ss_pred cCCCEEEEecC
Confidence 88998886433
No 186
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=80.19 E-value=3.5 Score=44.29 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=55.6
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHH---HHHHHHh---cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 265 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE---KQERLLK---ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 265 ~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~---~~~~~l~---~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
..+|+++|+.-+..++..|... ++.+..++|+++.. .+...+. +..+|||||. .+..| +++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~G----lDi 388 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGMG----LNL 388 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGSS----CCC
T ss_pred CCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHCC----cCc
Confidence 3467799999888888888764 67889999999976 4445555 4579999996 44444 778
Q ss_pred CcccEEEecccchh
Q 012319 339 HTLSFFVLDEADRM 352 (466)
Q Consensus 339 ~~l~~lViDEad~l 352 (466)
.+.+||+-.+.+.
T Consensus 389 -~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 389 -SIRRIIFYSLIKP 401 (677)
T ss_dssp -CBSEEEESCSBC-
T ss_pred -CccEEEECCcccc
Confidence 8999998877653
No 187
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=79.08 E-value=1.8 Score=46.47 Aligned_cols=68 Identities=10% Similarity=0.146 Sum_probs=48.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH-hcCCcEEEeCcHHHHHHHhCCCCccccCCcc
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL-KARPELVVGTPGRLWELMSGGEKHLVELHTL 341 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l-~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l 341 (466)
+.++||.+||++-|..++..|... ++.+..++|.. .......+ ....+|||||. .+..+ +++. +
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaTd-----v~e~G----IDip-v 474 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITTD-----ISEMG----ANFG-A 474 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHHHGGGGGTCCCSEEEECG-----GGGTT----CCCC-C
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHHHHHHHHCCCceEEEECc-----hhhcc----eeeC-C
Confidence 447999999999999988888764 78899999852 22222222 34689999994 34444 6677 7
Q ss_pred cEEE
Q 012319 342 SFFV 345 (466)
Q Consensus 342 ~~lV 345 (466)
.+||
T Consensus 475 ~~VI 478 (673)
T 2wv9_A 475 SRVI 478 (673)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7765
No 188
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=78.96 E-value=0.4 Score=49.02 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=0.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
..++||.||++.-|..++..|... ++.+..++|+++.......+ .+..+|||||. .+..| +++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~~G----lDi 399 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDV 399 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccccC----Ccc
Confidence 457999999999999988888765 67788899998765544333 23578999994 44443 778
Q ss_pred CcccEEE
Q 012319 339 HTLSFFV 345 (466)
Q Consensus 339 ~~l~~lV 345 (466)
..+.+||
T Consensus 400 p~v~~VI 406 (479)
T 3fmp_B 400 EQVSVVI 406 (479)
T ss_dssp -------
T ss_pred ccCCEEE
Confidence 8888876
No 189
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=78.76 E-value=0.75 Score=45.48 Aligned_cols=70 Identities=17% Similarity=0.394 Sum_probs=46.6
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccCC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 339 (466)
.++||.++++.-|..+++.|... ++.+..++|+++...+...+. +..+|||||. .+..| +++.
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idip 347 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LLARG----IDVQ 347 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SCC------CCGG
T ss_pred CcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----ccccC----CCcc
Confidence 47999999999999988888654 678888999988765544432 3578999995 23333 6777
Q ss_pred cccEEEe
Q 012319 340 TLSFFVL 346 (466)
Q Consensus 340 ~l~~lVi 346 (466)
.+.+||.
T Consensus 348 ~v~~Vi~ 354 (414)
T 3eiq_A 348 QVSLVIN 354 (414)
T ss_dssp GCSCEEE
T ss_pred CCCEEEE
Confidence 8888775
No 190
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=78.62 E-value=2 Score=43.60 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=47.9
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEE
Q 012319 265 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 344 (466)
Q Consensus 265 ~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~l 344 (466)
++||.+||+.-|..++..|... ++.+..++|............+..+|||||. .+..| +++.. .+|
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~G----iDip~-~~V 255 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEMG----ANFRA-GRV 255 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGSS----CCCCC-SEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHhC----cCCCC-CEE
Confidence 7999999999999998888654 6788888887653322222235689999995 44444 66766 665
Q ss_pred E
Q 012319 345 V 345 (466)
Q Consensus 345 V 345 (466)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 191
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=78.21 E-value=5.6 Score=40.62 Aligned_cols=75 Identities=15% Similarity=0.299 Sum_probs=45.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEE--------CCCCHHHHHHHH---h--cCCcEEEeCcHHHHHHHh
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIV--------GGMSTEKQERLL---K--ARPELVVGTPGRLWELMS 329 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~--------gg~~~~~~~~~l---~--~~~dIiV~TP~~L~~~l~ 329 (466)
..++||.++++..|..++..|........+.+..++ |+++...+...+ . +..+|||||. .+.
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~ 463 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VAD 463 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----CTT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hhh
Confidence 358999999999999999999876432234444444 455554433322 2 3579999995 334
Q ss_pred CCCCccccCCcccEEEe
Q 012319 330 GGEKHLVELHTLSFFVL 346 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lVi 346 (466)
.| +++..+.+||.
T Consensus 464 ~G----lDlp~v~~VI~ 476 (555)
T 3tbk_A 464 EG----IDIAECNLVIL 476 (555)
T ss_dssp CC----EETTSCSEEEE
T ss_pred cC----CccccCCEEEE
Confidence 43 88899998886
No 192
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=77.60 E-value=3.7 Score=43.60 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=47.9
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccE
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 343 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~ 343 (466)
.++||.++|+.-|..+++.|... ++.+..++|...............+|||||. .+..+ +++. +.+
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~rG----iDi~-v~~ 421 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEMG----ANFR-AGR 421 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGTT----CCCC-CSE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHcC----cccC-ceE
Confidence 37999999999999999998875 6788888886333222233345789999996 44444 5564 666
Q ss_pred E
Q 012319 344 F 344 (466)
Q Consensus 344 l 344 (466)
|
T Consensus 422 V 422 (618)
T 2whx_A 422 V 422 (618)
T ss_dssp E
T ss_pred E
Confidence 5
No 193
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=77.58 E-value=7.5 Score=37.40 Aligned_cols=17 Identities=35% Similarity=0.085 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
-+++.|++|+|||...+
T Consensus 109 i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHhHHHH
Confidence 78999999999995543
No 194
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=76.75 E-value=2.6 Score=42.24 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=21.4
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 556666776556788899999999986
No 195
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=76.65 E-value=4.2 Score=36.86 Aligned_cols=53 Identities=8% Similarity=0.051 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHhc--CCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 182 PLLMKSIYRLGFKEPTPIQKACIPAAAHQ--GKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 182 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~--~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
..|.+-|.-.|+ .+... ...+..++.+ .+..+++.+|.|+|||..+ ..+++.+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 356666665554 23333 3445555443 2226999999999999654 4455544
No 196
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=76.59 E-value=0.89 Score=48.74 Aligned_cols=75 Identities=19% Similarity=0.414 Sum_probs=50.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHH--HcCCCcEEEEEECC--------CCHHHHHHHHh----cCCcEEEeCcHHHHHHH
Q 012319 263 HLRALIITPTRELALQVTDHLKEV--AKGINVRVVPIVGG--------MSTEKQERLLK----ARPELVVGTPGRLWELM 328 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l--~~~~~~~v~~~~gg--------~~~~~~~~~l~----~~~dIiV~TP~~L~~~l 328 (466)
+.++||.++++..|..+++.|... ....++.+..++|+ ++...+...+. +..+|||||- .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 458999999999999999988764 22236888889998 88766555443 3678999995 33
Q ss_pred hCCCCccccCCcccEEEe
Q 012319 329 SGGEKHLVELHTLSFFVL 346 (466)
Q Consensus 329 ~~~~~~~~~l~~l~~lVi 346 (466)
..| +++..+.+||.
T Consensus 475 ~~G----IDip~v~~VI~ 488 (699)
T 4gl2_A 475 EEG----LDIKECNIVIR 488 (699)
T ss_dssp CTT----SCCCSCCCCEE
T ss_pred ccC----CccccCCEEEE
Confidence 333 77888888873
No 197
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=76.39 E-value=6.9 Score=39.91 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=51.1
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccCCc
Q 012319 265 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHT 340 (466)
Q Consensus 265 ~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 340 (466)
+.+|++..+.-+..+++.|... +.++..++|+++.......+ ....+|||||+..+ ..| +++..
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~----~~G----iDip~ 416 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF----STG----ISVKN 416 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH----HHS----CCCCS
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh----hcc----ccccc
Confidence 4455555566666666666553 45888899999876543333 35679999996555 333 67889
Q ss_pred ccEEEecccc
Q 012319 341 LSFFVLDEAD 350 (466)
Q Consensus 341 l~~lViDEad 350 (466)
+.+||+..+.
T Consensus 417 v~~vi~~~~~ 426 (510)
T 2oca_A 417 LHHVVLAHGV 426 (510)
T ss_dssp EEEEEESSCC
T ss_pred CcEEEEeCCC
Confidence 9999998887
No 198
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.95 E-value=2.5 Score=46.26 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-||+.||.|+|||+..
T Consensus 240 GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIA 255 (806)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999654
No 199
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=74.82 E-value=2.6 Score=44.99 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=43.6
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEEC--------CCCHHHHHHHH----h-cCCcEEEeCcHHHHHHHh
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG--------GMSTEKQERLL----K-ARPELVVGTPGRLWELMS 329 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~g--------g~~~~~~~~~l----~-~~~dIiV~TP~~L~~~l~ 329 (466)
+.++||.++++..|..+++.|........+++..++| +++...+...+ . +...|||||- .+.
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~~ 472 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VAD 472 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----SSC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hhh
Confidence 4579999999999999999998763222366776754 66654443333 2 4578999994 333
Q ss_pred CCCCccccCCcccEEEeccc
Q 012319 330 GGEKHLVELHTLSFFVLDEA 349 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lViDEa 349 (466)
.| +++..+.+||.=..
T Consensus 473 ~G----iDip~v~~VI~~d~ 488 (696)
T 2ykg_A 473 EG----IDIAQCNLVILYEY 488 (696)
T ss_dssp CC-------CCCSEEEEESC
T ss_pred cC----CcCccCCEEEEeCC
Confidence 33 78888998886333
No 200
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=74.72 E-value=2.2 Score=41.85 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=20.3
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|+||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344556666556788899999999875
No 201
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=74.68 E-value=2.6 Score=36.10 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|++|+|||...
T Consensus 45 ~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIV 60 (195)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred ceEEECCCCCCHHHHH
Confidence 8999999999999654
No 202
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=74.29 E-value=2.1 Score=42.31 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=20.7
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|.||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 455666666557788899999999875
No 203
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=74.24 E-value=3.3 Score=41.76 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 199 IQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 199 iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
-+..++..++...+..+++.||||||||...
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3444555444332226899999999999653
No 204
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=74.17 E-value=5.7 Score=42.65 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=53.8
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcC--------------------------------CCcEEEEEECCCCHHHHHHHHh
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKG--------------------------------INVRVVPIVGGMSTEKQERLLK 311 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~--------------------------------~~~~v~~~~gg~~~~~~~~~l~ 311 (466)
.++||.+|+|.-|..++..+...... ....+..++|+.+...+.....
T Consensus 253 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~ 332 (715)
T 2va8_A 253 GQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEE 332 (715)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHH
Confidence 47999999999999998888764321 0134788999999876655443
Q ss_pred ----cCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEec
Q 012319 312 ----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 347 (466)
Q Consensus 312 ----~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViD 347 (466)
+...|||||. .+..| +++..+.+||.+
T Consensus 333 ~f~~g~~~vlvaT~-----~l~~G----idip~~~~VI~~ 363 (715)
T 2va8_A 333 GFRQRKIKVIVATP-----TLAAG----VNLPARTVIIGD 363 (715)
T ss_dssp HHHTTCSCEEEECG-----GGGGS----SCCCBSEEEECC
T ss_pred HHHcCCCeEEEECh-----HHhcc----cCCCceEEEEeC
Confidence 5689999994 33333 778888776543
No 205
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=73.63 E-value=7.5 Score=36.57 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=31.5
Q ss_pred HHHHHHHHCCCCCCcHHHHH-HHHHHHhcC---CccEEEecCCCCchhHHHH
Q 012319 183 LLMKSIYRLGFKEPTPIQKA-CIPAAAHQG---KVDIIGAAETGSGKTLAFG 230 (466)
Q Consensus 183 ~l~~~l~~~g~~~pt~iQ~~-~i~~~l~~~---~~dvl~~a~TGSGKTl~~~ 230 (466)
.+.+-|.-.||. |++-. ++..++.+. +..+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 677777778874 66633 345555543 3369999999999997664
No 206
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=73.49 E-value=3.2 Score=36.55 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||...
T Consensus 56 ~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLL 71 (202)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999754
No 207
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=73.29 E-value=2.5 Score=41.16 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=20.1
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344555666556788899999999875
No 208
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=72.48 E-value=2.6 Score=41.68 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=20.2
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 344555666556788899999999885
No 209
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=72.17 E-value=2.5 Score=36.16 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 45 ~vll~G~~G~GKT~la 60 (187)
T 2p65_A 45 NPILLGDPGVGKTAIV 60 (187)
T ss_dssp EEEEESCGGGCHHHHH
T ss_pred ceEEECCCCCCHHHHH
Confidence 8999999999999654
No 210
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=72.14 E-value=2.7 Score=41.32 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=20.2
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|+||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 344555666557788899999999885
No 211
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.04 E-value=2.5 Score=46.36 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=30.8
Q ss_pred cCccccCCCCHHHHHHHHHCC-C--CCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 172 FDAWNELRLHPLLMKSIYRLG-F--KEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g-~--~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
...|.+++.-..+.+.|...- + ..|.-++... +...+ -+|+.+|.|+|||+..
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g----~~~~~-gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG----MTPSK-GVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC----CCCCS-CCEEESSTTSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC----CCCCc-eEEEecCCCCCchHHH
Confidence 357888887777777776531 1 1111111000 01122 6899999999999654
No 212
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=71.96 E-value=2.3 Score=42.79 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=20.0
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|.||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 344556665446788899999999875
No 213
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=71.95 E-value=35 Score=29.84 Aligned_cols=67 Identities=16% Similarity=0.048 Sum_probs=18.7
Q ss_pred HhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHH
Q 012319 208 AHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 286 (466)
Q Consensus 208 l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l 286 (466)
+++| .+-+.+..|-|=|+.+.+|+...-..... ..........+.++|||=........+...|...
T Consensus 18 ~hgG--~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~----------~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~ 84 (206)
T 3mm4_A 18 SHMA--STDSESETRVKSVRTGRKPIGNPEDEQET----------SKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM 84 (206)
T ss_dssp -------------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT
T ss_pred ccCC--ceeeeccCCCcceeeeccCCCCCcccccc----------cCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 4666 78888999999999999997543211100 0011122334568888888877766666666544
No 214
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=71.87 E-value=2.4 Score=42.62 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=21.4
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|+||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 566666776557788899999999875
No 215
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=71.81 E-value=2.8 Score=40.85 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=20.8
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
.+..++.+....|++.|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 455666766556788899999999876
No 216
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=71.64 E-value=2.6 Score=41.79 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=20.2
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|+||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 344556666557788899999999874
No 217
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=71.60 E-value=2.7 Score=38.93 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=15.9
Q ss_pred hcCCccEEEecCCCCchhHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+. .+++.|++|+|||...
T Consensus 27 ~~~~-~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDK-PVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCS-CEEEECCTTSCHHHHH
T ss_pred CCCC-CEEEECCCCCcHHHHH
Confidence 3344 9999999999999654
No 218
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=71.41 E-value=2.8 Score=41.43 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=20.2
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|+||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 344556666557788899999999875
No 219
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=71.35 E-value=2.9 Score=41.46 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=20.2
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+...-|++.|.||||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 344556666557788899999999875
No 220
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=71.23 E-value=2.9 Score=40.98 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=20.0
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.++||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 344555666556788899999999875
No 221
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=70.94 E-value=2.8 Score=41.22 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=20.4
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 344555666557788899999999886
No 222
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=70.75 E-value=2.8 Score=41.33 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=20.3
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.++||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 455566666556788899999999875
No 223
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=70.61 E-value=4.5 Score=36.62 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.7
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++|++|+|||...
T Consensus 32 l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 7899999999999443
No 224
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=70.46 E-value=2.8 Score=41.30 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=19.5
Q ss_pred HHHHHhcCCccEEEecCCCCchhHHH
Q 012319 204 IPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 204 i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
+..++.+....|++.|+||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 44455665556788899999999875
No 225
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=70.44 E-value=2.9 Score=41.21 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=20.4
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 445556666556788899999999886
No 226
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=70.44 E-value=3.2 Score=44.48 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=49.3
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCccc
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 342 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~ 342 (466)
+.++||.++|+.-|..+++.|... ++.+..++|+.....+ .+.+.+|||||. .+..+ +++. ++
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----VaerG----IDId-V~ 458 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMTG----YTGD-FD 458 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHHH----CCCC-BS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHcc----CCCC-Cc
Confidence 458999999999999999888764 7889999999886542 335669999995 23222 4454 77
Q ss_pred EEE
Q 012319 343 FFV 345 (466)
Q Consensus 343 ~lV 345 (466)
+||
T Consensus 459 ~VI 461 (666)
T 3o8b_A 459 SVI 461 (666)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 227
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=70.32 E-value=0.9 Score=44.51 Aligned_cols=71 Identities=18% Similarity=0.402 Sum_probs=0.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
..++||.++++.-|..+++.|... ++.+..++|+++.......+. ....|||||. .+..| +++
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----ldi 325 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----hhhcC----CCc
Confidence 347999999999999888888764 677888888877654433332 3578999995 33333 667
Q ss_pred CcccEEEe
Q 012319 339 HTLSFFVL 346 (466)
Q Consensus 339 ~~l~~lVi 346 (466)
..+.+||.
T Consensus 326 ~~~~~Vi~ 333 (394)
T 1fuu_A 326 QQVSLVIN 333 (394)
T ss_dssp --------
T ss_pred ccCCEEEE
Confidence 77777764
No 228
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=70.21 E-value=2.8 Score=41.27 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=20.1
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+...-|++.|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 344555666556788899999999875
No 229
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=69.49 E-value=2.6 Score=41.58 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=19.7
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+...-|++.|+||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 344555665446788899999999875
No 230
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=69.37 E-value=2.8 Score=41.74 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=20.0
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+...-|++.|.||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 345556665446788899999999875
No 231
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=68.99 E-value=5.1 Score=48.19 Aligned_cols=27 Identities=22% Similarity=0.020 Sum_probs=20.1
Q ss_pred cCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.+. ++++++++|||||...+..+.+.+
T Consensus 1080 ~g~-~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1080 MGR-IVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp TTS-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCc-EEEEECCCCCCHHHHHHHHHHHHH
Confidence 344 899999999999976655554444
No 232
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=68.63 E-value=2.5 Score=41.87 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=20.4
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 455666666446788899999999885
No 233
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=68.59 E-value=3.6 Score=40.44 Aligned_cols=24 Identities=42% Similarity=0.454 Sum_probs=18.4
Q ss_pred HHHHhcCCccEEEecCCCCchhHHH
Q 012319 205 PAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 205 ~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
...+..+. .++++||||||||...
T Consensus 169 ~~~i~~G~-~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 169 RRAVQLER-VIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHHHTTC-CEEEEESSSSCHHHHH
T ss_pred HHHHhcCC-EEEEECCCCCCHHHHH
Confidence 33445666 9999999999999654
No 234
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=68.49 E-value=3.7 Score=40.51 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=16.8
Q ss_pred HHHhcCC-ccEEEecCCCCchhHHH
Q 012319 206 AAAHQGK-VDIIGAAETGSGKTLAF 229 (466)
Q Consensus 206 ~~l~~~~-~dvl~~a~TGSGKTl~~ 229 (466)
.++.++. .-|++.|+||||||.+.
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred hhccCCceeEEEeeCCCCCCCCEEE
Confidence 3444343 12688999999999876
No 235
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.46 E-value=1.4 Score=44.61 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=33.4
Q ss_pred ccCccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 171 EFDAWNELRLHPLLMKSIYRLG---FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
+..+|.+++--..+.+.|...= +..|.-++...+ ...+ -+|+.||.|||||+..
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~----~~pr-GvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI----RAPK-GALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC----CCCC-EEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCC-eeEEECcCCCCHHHHH
Confidence 4578999987777777765431 112222222111 1223 7999999999999754
No 236
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=68.30 E-value=2.4 Score=41.67 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=20.5
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|+||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 455666665446788899999999886
No 237
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=68.25 E-value=3.6 Score=41.81 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=20.4
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|.||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 344556666556788899999999886
No 238
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=68.12 E-value=17 Score=34.66 Aligned_cols=17 Identities=35% Similarity=0.126 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
-+++.|++|+|||...+
T Consensus 100 i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999995443
No 239
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=67.84 E-value=2.4 Score=41.68 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=20.3
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+...-|++.|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 455555666556788899999999876
No 240
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=67.63 E-value=2.7 Score=41.90 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=18.9
Q ss_pred HHHHhcCCccEEEecCCCCchhHHH
Q 012319 205 PAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 205 ~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..++.+...-|++.|+||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 3455665546788899999999876
No 241
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=67.62 E-value=46 Score=36.14 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=52.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhc----CCc--EEEeCcHHHHHHHhCCCCccc
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA----RPE--LVVGTPGRLWELMSGGEKHLV 336 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~d--IiV~TP~~L~~~l~~~~~~~~ 336 (466)
+-++||.+..+..+..+...|... ++.+..++|+++.......+.. ... |++.|.. ....| +
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~----agg~G----l 639 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR----AGGLG----I 639 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHH----HHTTT----C
T ss_pred CCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecc----cccCC----C
Confidence 458999999999888888877655 6788889999998776665542 222 3444432 33333 7
Q ss_pred cCCcccEEEecccc
Q 012319 337 ELHTLSFFVLDEAD 350 (466)
Q Consensus 337 ~l~~l~~lViDEad 350 (466)
+|..+.+||+=+.+
T Consensus 640 NL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 640 NLMTADTVVIFDSD 653 (800)
T ss_dssp CCTTCCEEEESSCC
T ss_pred CccccceEEEecCC
Confidence 78888888775444
No 242
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=67.50 E-value=9.6 Score=43.67 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=41.8
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 287 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~ 287 (466)
..+|.|.-|||||.+...-++..++..... .....+...-++|+|+=|+..|..+.+++....
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~-----------~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGS-----------AAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSS-----------SSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcc-----------cccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 569999999999988877677666421000 000011223479999999998888877776543
No 243
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=67.47 E-value=21 Score=33.86 Aligned_cols=16 Identities=31% Similarity=0.142 Sum_probs=12.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+.+.+++|+|||...
T Consensus 100 ~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTA 115 (295)
T ss_dssp EEEEECCTTTTHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999654
No 244
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=67.12 E-value=6.1 Score=37.82 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=14.9
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
.+++.||+|+|||....
T Consensus 154 ~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 89999999999996553
No 245
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=67.10 E-value=2.8 Score=39.27 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=16.0
Q ss_pred hcCCccEEEecCCCCchhHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+. -++++||||||||...
T Consensus 23 ~~g~-~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMG-LILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSE-EEEEECSTTCSHHHHH
T ss_pred CCCC-EEEEECCCCccHHHHH
Confidence 4454 7899999999999654
No 246
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=66.66 E-value=9 Score=41.04 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=51.9
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcC--------------------------CCcEEEEEECCCCHHHHHHHHh----cC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKG--------------------------INVRVVPIVGGMSTEKQERLLK----AR 313 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~--------------------------~~~~v~~~~gg~~~~~~~~~l~----~~ 313 (466)
.++||.+|+|.-|..++..+...+.. .+..+..++|+.+...+..... +.
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 322 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGN 322 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCC
Confidence 36999999999999988888765321 0124677899999876654443 46
Q ss_pred CcEEEeCcHHHHHHHhCCCCccccCCcccEEEe
Q 012319 314 PELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 346 (466)
Q Consensus 314 ~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lVi 346 (466)
..|||||. .+..| +++..+.+||.
T Consensus 323 ~~vlvaT~-----~l~~G----idip~~~~VI~ 346 (702)
T 2p6r_A 323 IKVVVATP-----TLAAG----VNLPARRVIVR 346 (702)
T ss_dssp CCEEEECS-----TTTSS----SCCCBSEEEEC
T ss_pred CeEEEECc-----HHhcc----CCCCceEEEEc
Confidence 79999996 33333 77788776554
No 247
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=65.99 E-value=3.3 Score=40.05 Aligned_cols=16 Identities=38% Similarity=0.260 Sum_probs=13.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++||||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 5788999999999654
No 248
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=65.96 E-value=3.3 Score=40.14 Aligned_cols=16 Identities=25% Similarity=0.084 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++||||||||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 5788999999999654
No 249
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=65.89 E-value=3.3 Score=40.50 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||||||||...
T Consensus 42 lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999655
No 250
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=65.43 E-value=28 Score=34.98 Aligned_cols=17 Identities=29% Similarity=0.143 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
.+++++++|+|||....
T Consensus 100 vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56778999999997653
No 251
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=64.60 E-value=3.2 Score=41.17 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=20.4
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
.+..++.+....|++.|.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 455556666556788899999999875
No 252
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=64.28 E-value=5.3 Score=39.24 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=15.7
Q ss_pred hcCCccEEEecCCCCchhHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+. .++++||||||||...
T Consensus 121 ~~~g-~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRG-LVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSE-EEEEECSTTSCHHHHH
T ss_pred CCCC-EEEEECCCCCCHHHHH
Confidence 3344 8999999999999654
No 253
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=64.25 E-value=8.5 Score=37.48 Aligned_cols=16 Identities=50% Similarity=0.582 Sum_probs=14.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 53 ~vll~GppGtGKT~la 68 (363)
T 3hws_A 53 NILLIGPTGSGKTLLA 68 (363)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999754
No 254
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=64.22 E-value=5.8 Score=39.16 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=20.1
Q ss_pred ccEEEecccchhhcc---CCHHHHHHHHHhCC
Q 012319 341 LSFFVLDEADRMIEN---GHFRELQSIIDMLP 369 (466)
Q Consensus 341 l~~lViDEad~ll~~---g~~~~l~~Il~~l~ 369 (466)
-.++||||||.++.. .+...+..+++..+
T Consensus 263 ~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~R 294 (392)
T 4ag6_A 263 RTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIR 294 (392)
T ss_dssp TCEEEETTGGGGCCTTCTHHHHHHHHHHHHGG
T ss_pred cEEEEEecHHHHhCcCchHHHHHHHHHHHHhh
Confidence 468999999999852 23455666666665
No 255
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=64.15 E-value=11 Score=40.55 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=51.5
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcC-----------------------------CCcEEEEEECCCCHHHHHHHHh---
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKG-----------------------------INVRVVPIVGGMSTEKQERLLK--- 311 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~-----------------------------~~~~v~~~~gg~~~~~~~~~l~--- 311 (466)
.++||.+|+|.-|..++..+...+.. ....+..++|+.+...+.....
T Consensus 238 ~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 317 (720)
T 2zj8_A 238 KGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR 317 (720)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 47999999999999988888765321 0124788999999876654332
Q ss_pred -cCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEec
Q 012319 312 -ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 347 (466)
Q Consensus 312 -~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViD 347 (466)
+...|||||. .+..| +++..+.+ ||+
T Consensus 318 ~g~~~vlvaT~-----~l~~G----vdip~~~~-VI~ 344 (720)
T 2zj8_A 318 KGIIKAVVATP-----TLSAG----INTPAFRV-IIR 344 (720)
T ss_dssp TTSSCEEEECS-----TTGGG----CCCCBSEE-EEC
T ss_pred CCCCeEEEECc-----Hhhcc----CCCCceEE-EEc
Confidence 4679999995 22222 66777776 444
No 256
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=63.92 E-value=5.5 Score=40.38 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=18.0
Q ss_pred cCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.+. -+++.|++|+|||.. ++.+..++
T Consensus 196 ~G~-liiIaG~pG~GKTtl-al~ia~~~ 221 (444)
T 3bgw_A 196 RRN-FVLIAARPSMGKTAF-ALKQAKNM 221 (444)
T ss_dssp SSC-EEEEEECSSSSHHHH-HHHHHHHH
T ss_pred CCc-EEEEEeCCCCChHHH-HHHHHHHH
Confidence 344 689999999999954 44444444
No 257
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=63.86 E-value=4.2 Score=38.84 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.|++.|++|+|||...
T Consensus 27 ~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVA 42 (304)
T ss_dssp CEEEESCTTSCHHHHH
T ss_pred cEEEECCCCchHHHHH
Confidence 8999999999999654
No 258
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=63.75 E-value=4.4 Score=39.35 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=17.7
Q ss_pred HHHHhcCCccEEEecCCCCchhHH
Q 012319 205 PAAAHQGKVDIIGAAETGSGKTLA 228 (466)
Q Consensus 205 ~~~l~~~~~dvl~~a~TGSGKTl~ 228 (466)
...+..+. .+++.+|||||||..
T Consensus 165 ~~~i~~g~-~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 165 KDGIAIGK-NVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHHHHTC-CEEEEESTTSCHHHH
T ss_pred hhhccCCC-EEEEECCCCCCHHHH
Confidence 33345566 999999999999964
No 259
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=63.41 E-value=4.2 Score=35.36 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++||+|||||...
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7889999999999654
No 260
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=63.27 E-value=10 Score=39.05 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 197 TPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 197 t~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+=..++-.++. +. ++++.||+|+|||...
T Consensus 28 ~~~i~~l~~al~~-~~-~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 28 SHAIRLCLLAALS-GE-SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHH-TC-EEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHhc-CC-eeEeecCchHHHHHHH
Confidence 3333444444434 44 9999999999999654
No 261
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=63.14 E-value=4.8 Score=39.82 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=48.3
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE-EEECCCCHHHHHHHHhcCCcEEEe----CcHHHHHHHhCCCCccccC
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVV-PIVGGMSTEKQERLLKARPELVVG----TPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~-~~~gg~~~~~~~~~l~~~~dIiV~----TP~~L~~~l~~~~~~~~~l 338 (466)
.++||.++|+.-|..++..|... ++.+. .++|. .. .......+..+|||| |. .+..| +++
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~-~r-~~~~f~~g~~~vLvat~s~T~-----~~~~G----iDi 317 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF-EK-NFEDFKVGKINILIGVQAYYG-----KLTRG----VDL 317 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT----TCCEEESSSCH-HH-HHHHHHTTSCSEEEEECCTTC-----CCCCC----CCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCceehhhcCc-ch-HHHHHhCCCCeEEEEecCcCc-----hhhcc----Ccc
Confidence 47999999999999999988875 66776 55554 22 222222356899999 63 23333 778
Q ss_pred Cc-ccEEEecc
Q 012319 339 HT-LSFFVLDE 348 (466)
Q Consensus 339 ~~-l~~lViDE 348 (466)
.. +.+||.=.
T Consensus 318 p~~v~~VI~~~ 328 (414)
T 3oiy_A 318 PERIKYVIFWG 328 (414)
T ss_dssp TTTCCEEEEES
T ss_pred ccccCEEEEEC
Confidence 88 88887533
No 262
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=62.96 E-value=15 Score=34.29 Aligned_cols=16 Identities=38% Similarity=0.401 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 52 ~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIA 67 (310)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999654
No 263
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=62.95 E-value=12 Score=36.60 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=17.0
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
-+++.+|+|+|||. +++.++..+
T Consensus 63 i~~I~GppGsGKST-Lal~la~~~ 85 (356)
T 3hr8_A 63 IVEIFGQESSGKTT-LALHAIAEA 85 (356)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHH-HHHHHHHHH
Confidence 78899999999995 445555444
No 264
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=62.41 E-value=3.5 Score=34.81 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6789999999999754
No 265
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=62.33 E-value=4.2 Score=37.67 Aligned_cols=16 Identities=31% Similarity=-0.041 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++||||||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5789999999999654
No 266
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=62.07 E-value=4.4 Score=41.57 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=33.0
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCC--------CcEEEEEECCCCHHHHHHHH---h--cCCcEEEeCcHHHHHHHh
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGI--------NVRVVPIVGGMSTEKQERLL---K--ARPELVVGTPGRLWELMS 329 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~--------~~~v~~~~gg~~~~~~~~~l---~--~~~dIiV~TP~~L~~~l~ 329 (466)
+.++||.++++..+..+++.|....... +.....++|+++...+...+ . +..+|||||. .+.
T Consensus 390 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~ 464 (556)
T 4a2p_A 390 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD 464 (556)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC--------
T ss_pred CceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----chh
Confidence 4589999999999999998887642111 22333345566554433332 2 3578999995 333
Q ss_pred CCCCccccCCcccEEEec
Q 012319 330 GGEKHLVELHTLSFFVLD 347 (466)
Q Consensus 330 ~~~~~~~~l~~l~~lViD 347 (466)
.| +++..+.+||.=
T Consensus 465 ~G----iDip~v~~VI~~ 478 (556)
T 4a2p_A 465 EG----IDIVQCNLVVLY 478 (556)
T ss_dssp ------------CEEEEE
T ss_pred cC----CCchhCCEEEEe
Confidence 33 778889988863
No 267
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=61.90 E-value=4.5 Score=36.11 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++||+|+|||...
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 7889999999999754
No 268
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=61.88 E-value=11 Score=33.94 Aligned_cols=31 Identities=32% Similarity=0.314 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 197 TPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 197 t~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
+--|..++..+ ..+. -+.+.+|+|||||..+
T Consensus 9 ~~g~~~~l~~i-~~Ge-~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAI-DTNT-IVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHH-HHCS-EEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhc-cCCC-EEEEECCCCCCHHHHH
Confidence 34456677666 5565 7788999999999654
No 269
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=61.69 E-value=10 Score=42.29 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=39.3
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcCC--------CcEEEEEECCCCHHHHHHHH---h--cCCcEEEeCcHHHHHHH
Q 012319 262 GHLRALIITPTRELALQVTDHLKEVAKGI--------NVRVVPIVGGMSTEKQERLL---K--ARPELVVGTPGRLWELM 328 (466)
Q Consensus 262 ~~~~vLil~PtreLa~Qv~~~l~~l~~~~--------~~~v~~~~gg~~~~~~~~~l---~--~~~dIiV~TP~~L~~~l 328 (466)
.+.++||.++++..+..+.+.|....... |.....++|+++...+...+ + +..+|||||- ++
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~~ 704 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 704 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----ch
Confidence 35689999999999999999998752111 23334446666655443333 2 3578999994 33
Q ss_pred hCCCCccccCCcccEEEeccc
Q 012319 329 SGGEKHLVELHTLSFFVLDEA 349 (466)
Q Consensus 329 ~~~~~~~~~l~~l~~lViDEa 349 (466)
..| +++..+.+||+=.+
T Consensus 705 ~eG----IDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 705 DEG----IDIVQCNLVVLYEY 721 (936)
T ss_dssp ---------CCCCSEEEEESC
T ss_pred hcC----CcchhCCEEEEeCC
Confidence 333 77888888886433
No 270
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=61.46 E-value=12 Score=38.66 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=17.8
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
++++.+.||||||.+.-.-++..+
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999976544333333
No 271
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=61.41 E-value=5 Score=35.54 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++||+|+|||...
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999654
No 272
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=61.37 E-value=3.7 Score=37.60 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 41 ~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLA 56 (262)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999654
No 273
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=61.27 E-value=27 Score=33.47 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+++.+++|+|||...
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999764
No 274
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=61.05 E-value=11 Score=42.92 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=29.7
Q ss_pred EEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHH
Q 012319 216 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 285 (466)
Q Consensus 216 l~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~ 285 (466)
+|.|..|||||.+.+--+. +++.. +..+.++|+|||.. +..++...+..
T Consensus 5 lV~agAGSGKT~~l~~ri~-~ll~~-------------------~~~~~~il~lVP~q-~TFt~~~rl~~ 53 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQ-DELRR-------------------APFGKPIIFLVPDQ-MTFLMEYELAK 53 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHH-HHHHH-------------------CTTSSCEEEECCGG-GHHHHHHHHTC
T ss_pred EEEeCCCCChHHHHHHHHH-HHHHh-------------------CCCCCcEEEEecCc-ccHHHHHHHHH
Confidence 6788999999976544333 33322 11345799999976 34444444433
No 275
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=60.99 E-value=3.8 Score=36.31 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=13.2
Q ss_pred cEEEecCCCCchhHH
Q 012319 214 DIIGAAETGSGKTLA 228 (466)
Q Consensus 214 dvl~~a~TGSGKTl~ 228 (466)
-||++||+|+|||..
T Consensus 3 pIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 3 PIVISGPSGTGKSTL 17 (186)
T ss_dssp CEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999964
No 276
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=60.81 E-value=4.4 Score=38.88 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.0
Q ss_pred hcCCccEEEecCCCCchhHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+. ++++.||+|+|||...
T Consensus 44 ~~~~-~vll~G~pGtGKT~la 63 (331)
T 2r44_A 44 CTGG-HILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHTC-CEEEESCCCHHHHHHH
T ss_pred HcCC-eEEEECCCCCcHHHHH
Confidence 3444 9999999999999654
No 277
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=59.90 E-value=11 Score=39.39 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=18.5
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
+++|.|.||||||.+.-.-++..+
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999977654444443
No 278
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=59.74 E-value=7.6 Score=43.48 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=62.9
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHH---HhcC---CcEEEeCcHHHHHHHhCCCCccc
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LKAR---PELVVGTPGRLWELMSGGEKHLV 336 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~---l~~~---~dIiV~TP~~L~~~l~~~~~~~~ 336 (466)
+.++||.++++.-+..+...|... .++.+..++|+++....... +..+ ++|||||. . +..| +
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-v----~~~G----l 570 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-I----GSEG----R 570 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-C----TTCS----S
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-h----hhcC----C
Confidence 458999999999998888887642 37889999999876444333 3333 89999993 2 3333 7
Q ss_pred cCCcccEEEecccchhhccCCHHHHHHHHHhCCC
Q 012319 337 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 370 (466)
Q Consensus 337 ~l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~~ 370 (466)
++..+.+||+-.++ + ....+.+.+.+..+
T Consensus 571 Dl~~~~~VI~~d~p----~-~~~~~~Q~~GR~~R 599 (968)
T 3dmq_A 571 NFQFASHMVMFDLP----F-NPDLLEQRIGRLDR 599 (968)
T ss_dssp CCTTCCEEECSSCC----S-SHHHHHHHHHTTSC
T ss_pred CcccCcEEEEecCC----C-CHHHHHHHhhcccc
Confidence 88889999986665 2 23444555555543
No 279
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=59.09 E-value=19 Score=39.35 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=37.5
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhc--CCcEEEeCc
Q 012319 265 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA--RPELVVGTP 321 (466)
Q Consensus 265 ~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~--~~dIiV~TP 321 (466)
.+||.+.|++-+..+...|... ++.+.+++|+............ ...|+|||.
T Consensus 434 pvLVft~s~~~se~Ls~~L~~~----gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATd 488 (844)
T 1tf5_A 434 PVLVGTVAVETSELISKLLKNK----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN 488 (844)
T ss_dssp CEEEEESCHHHHHHHHHHHHTT----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET
T ss_pred cEEEEECCHHHHHHHHHHHHHC----CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCC
Confidence 4999999999998888877654 7888889998654333211111 357888884
No 280
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=58.83 E-value=4.3 Score=38.18 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 56 ~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLA 71 (297)
T ss_dssp EEEEESSSSSCHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 8999999999999654
No 281
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=58.60 E-value=5.3 Score=38.75 Aligned_cols=16 Identities=31% Similarity=0.179 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999654
No 282
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=58.46 E-value=42 Score=31.21 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=50.1
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH---hc--CCc-EEEeCcHHHHHHHhCCCCcccc
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---KA--RPE-LVVGTPGRLWELMSGGEKHLVE 337 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l---~~--~~d-IiV~TP~~L~~~l~~~~~~~~~ 337 (466)
-++||.+.++..+..+...|.... ++.+..++|+++.......+ .. .+. +|++|- . ... .++
T Consensus 113 ~kvlIFs~~~~~~~~l~~~L~~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~-~----~g~----Gln 180 (271)
T 1z5z_A 113 DKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-A----GGF----GIN 180 (271)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC-T----TCC----CCC
T ss_pred CeEEEEeccHHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh-h----hcC----CcC
Confidence 479999999999988888887632 56777899999875544433 22 345 455553 2 122 367
Q ss_pred CCcccEEEecccc
Q 012319 338 LHTLSFFVLDEAD 350 (466)
Q Consensus 338 l~~l~~lViDEad 350 (466)
|..+.+||+=+..
T Consensus 181 l~~a~~VI~~d~~ 193 (271)
T 1z5z_A 181 LTSANRVIHFDRW 193 (271)
T ss_dssp CTTCSEEEECSCC
T ss_pred cccCCEEEEECCC
Confidence 8888888764443
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=58.39 E-value=6.4 Score=34.64 Aligned_cols=19 Identities=26% Similarity=0.090 Sum_probs=15.8
Q ss_pred cCCccEEEecCCCCchhHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~ 229 (466)
.+. .++++|++|||||...
T Consensus 24 ~~~-~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMV-RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCC-EEEEECCTTSCHHHHH
T ss_pred CCC-EEEEEcCCCCCHHHHH
Confidence 444 8999999999999765
No 284
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=58.32 E-value=1.2 Score=46.13 Aligned_cols=71 Identities=11% Similarity=0.275 Sum_probs=45.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHH----HHHHhcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ----ERLLKARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~----~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.++++.-|..++..|.. .++.+..++|++....+ .....+..+|||||. ++..| +++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~----~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~~G----iDi 423 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTA----DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIARG----IDV 423 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTT----TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC--------------CCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhhcC----CCc
Confidence 34799999999999888887765 36778888888765332 122235678999996 44444 778
Q ss_pred CcccEEEe
Q 012319 339 HTLSFFVL 346 (466)
Q Consensus 339 ~~l~~lVi 346 (466)
..+.+||.
T Consensus 424 p~v~~VI~ 431 (508)
T 3fho_A 424 SQVNLVVN 431 (508)
T ss_dssp TTCCEEEC
T ss_pred cCCCEEEE
Confidence 88998885
No 285
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=58.26 E-value=5.9 Score=35.73 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=13.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+++.+|||+|||...
T Consensus 36 ~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 36 GVLITGDSGVGKSETA 51 (205)
T ss_dssp EEEEECCCTTTTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999998543
No 286
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=58.09 E-value=4.4 Score=37.25 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 47 ~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLA 62 (257)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 7999999999999654
No 287
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=58.06 E-value=4.6 Score=39.93 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=15.9
Q ss_pred hcCCccEEEecCCCCchhHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+. .++++||||||||...
T Consensus 134 ~~g~-~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMG-LILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSE-EEEEECSSSSSHHHHH
T ss_pred cCCC-EEEEECCCCCCHHHHH
Confidence 3444 7899999999999654
No 288
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=57.33 E-value=6.4 Score=33.93 Aligned_cols=16 Identities=31% Similarity=0.214 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|++|||||...
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999765
No 289
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=57.30 E-value=4.9 Score=34.42 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|+.|||||.+.
T Consensus 5 ~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIV 20 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999764
No 290
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=57.20 E-value=6.6 Score=34.38 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=15.0
Q ss_pred cCCccEEEecCCCCchhHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~ 229 (466)
.+. -+.+.||+|||||...
T Consensus 6 ~g~-ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KAN-LFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCC-EEEEECCTTSCHHHHH
T ss_pred CCc-EEEEECcCCCCHHHHH
Confidence 344 6788999999999654
No 291
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=57.07 E-value=4.3 Score=38.50 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||...
T Consensus 38 ~lLl~GppGtGKT~la 53 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQC 53 (293)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6888999999999654
No 292
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.00 E-value=5.9 Score=39.65 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=31.1
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH-HhcCCccEEEecCCCCchhHHH
Q 012319 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPAA-AHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~-~~i~~~-l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
+-..|.+++=-....+.|...- -.|+.. +.+..+ +...+ -+|+.||.|+|||+..
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v---~~Pl~~pe~f~~~gi~~pr-GvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVI---ELPVKHPELFESLGIAQPK-GVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHT---HHHHHCHHHHHHHTCCCCC-CEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHHhCHHHHHhCCCCCCC-ceEEeCCCCCCHHHHH
Confidence 3468888876566666665431 112211 111111 11223 7999999999999754
No 293
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=56.27 E-value=35 Score=32.51 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
-+++.+++|+|||....
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 57789999999996543
No 294
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=56.22 E-value=6.1 Score=38.58 Aligned_cols=16 Identities=38% Similarity=0.198 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 6889999999999654
No 295
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=56.03 E-value=5.3 Score=34.43 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
-+.++||+|||||..+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67889999999997654
No 296
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=56.02 E-value=8.3 Score=38.00 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=17.3
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
-+++.++.|+|||. +++.++..+
T Consensus 76 li~I~G~pGsGKTt-lal~la~~~ 98 (366)
T 1xp8_A 76 ITEIYGPESGGKTT-LALAIVAQA 98 (366)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHH
T ss_pred EEEEEcCCCCChHH-HHHHHHHHH
Confidence 78889999999994 445555544
No 297
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=55.90 E-value=5.3 Score=34.07 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=13.7
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++|+.|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 5789999999999754
No 298
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=55.73 E-value=5.2 Score=40.62 Aligned_cols=54 Identities=7% Similarity=0.108 Sum_probs=39.0
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeCc
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 321 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~TP 321 (466)
.++||.+||+.-|..++..|... ++.+..++|..-.........+..+|||||.
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC
Confidence 47999999999999999988875 6788888885322111111234679999995
No 299
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=55.59 E-value=5 Score=37.84 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 7999999999999654
No 300
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=55.16 E-value=5.4 Score=39.12 Aligned_cols=16 Identities=50% Similarity=0.592 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||...
T Consensus 74 ~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 74 NILLIGPTGSGKTLMA 89 (376)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 8999999999999654
No 301
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.06 E-value=6.2 Score=40.26 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=32.4
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHH-HhcCCccEEEecCCCCchhHHH
Q 012319 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAA-AHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ-~~~i~~~-l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
+-..|.+++--..+.+.|...-. .|+. -+.+..+ +...+ -+|+.||.|+|||+..
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~ppr-GILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPK-GILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCS-EEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCC-ceEeeCCCCCcHHHHH
Confidence 44688998877777777665311 1111 1111111 11233 8999999999999654
No 302
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=54.92 E-value=9.6 Score=37.38 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=16.9
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
-+++.++.|+|||... +.++..+
T Consensus 65 ii~I~G~pGsGKTtLa-l~la~~~ 87 (356)
T 1u94_A 65 IVEIYGPESSGKTTLT-LQVIAAA 87 (356)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH
Confidence 7899999999999654 4444433
No 303
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=54.81 E-value=5.4 Score=36.55 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=28.1
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHH-HhcCCccEEEecCCCCchhHHH
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAA-AHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ-~~~i~~~-l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
...|.++.-...+...+..+-.. +. ..++..+ +.-.. .+++.+|+|+|||...
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~~-g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF----LKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH----HHCHHHHHHTTCCCCS-EEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH----HHCHHHHHHcCCCCCC-eEEEECCCCCCHHHHH
Confidence 35677776666655555442110 00 1122211 01122 5899999999999654
No 304
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=54.72 E-value=6 Score=39.62 Aligned_cols=19 Identities=26% Similarity=0.656 Sum_probs=15.9
Q ss_pred chhhccCCHHHHHHHHHhC
Q 012319 350 DRMIENGHFRELQSIIDML 368 (466)
Q Consensus 350 d~ll~~g~~~~l~~Il~~l 368 (466)
|.|++.|+.+.+..++...
T Consensus 210 d~Ml~~GlleEv~~L~~~~ 228 (409)
T 3eph_A 210 DDMLERGALQEIKQLYEYY 228 (409)
T ss_dssp HHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHCcHHHHHHHHHHhc
Confidence 4488999999999999863
No 305
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=54.70 E-value=7.1 Score=33.97 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=13.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+.+.||+|+|||...
T Consensus 3 ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999654
No 306
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=54.57 E-value=7.8 Score=33.90 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+++.|++|||||...
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7889999999999654
No 307
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=54.42 E-value=8.6 Score=32.61 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7899999999999654
No 308
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=54.26 E-value=7 Score=37.46 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 47 ~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CEEEECCGGGCTTHHH
T ss_pred eEEEECCCCccHHHHH
Confidence 7999999999999654
No 309
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=54.21 E-value=6.5 Score=35.66 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=15.6
Q ss_pred hcCCccEEEecCCCCchhHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+. -+++.||+|+|||..+
T Consensus 14 ~~G~-ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 14 AQGT-LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp -CCC-EEEEECCTTSCHHHHH
T ss_pred CCCc-EEEEECCCCCCHHHHH
Confidence 4555 7889999999999754
No 310
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=54.20 E-value=7.4 Score=34.81 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++||+|+|||...
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 7889999999999644
No 311
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=54.13 E-value=12 Score=36.09 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 72 ~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIA 87 (368)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999654
No 312
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=54.13 E-value=8.6 Score=39.44 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=24.0
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
..+++||||||++| |..+...+..++..|.
T Consensus 413 ~~~rlvvlDEA~km-D~~~~~~~~~l~~~lg 442 (483)
T 3euj_A 413 LPCRLLFLDQAARL-DAMSINTLFELCERLD 442 (483)
T ss_dssp CCCCEEEESSGGGS-CHHHHHHHHHHHHHTT
T ss_pred CceeEEEEeccccC-CHHHHHHHHHHHHHcC
Confidence 58999999999666 5667777777887775
No 313
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=54.07 E-value=5.9 Score=33.48 Aligned_cols=16 Identities=19% Similarity=-0.128 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999754
No 314
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=54.05 E-value=7.6 Score=41.89 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=21.1
Q ss_pred HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
++..++.+....|++.|.||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 566777766556778899999999875
No 315
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.90 E-value=12 Score=47.09 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=32.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHH---HHhcCCccEEEecCCCCchhHHHH
Q 012319 181 HPLLMKSIYRLGFKEPTPIQKACIPA---AAHQGKVDIIGAAETGSGKTLAFG 230 (466)
Q Consensus 181 ~~~l~~~l~~~g~~~pt~iQ~~~i~~---~l~~~~~dvl~~a~TGSGKTl~~~ 230 (466)
...+.+.+...|+ .|++.+..-+-. ++.-++ -|++.||||||||.+|-
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRh-GvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINH-GVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCS-EEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHhee-eEEEECCCCCCHHHHHH
Confidence 4556677778888 566666433322 233444 89999999999999874
No 316
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=53.67 E-value=8.9 Score=39.01 Aligned_cols=17 Identities=29% Similarity=0.259 Sum_probs=15.0
Q ss_pred ccEEEecCCCCchhHHH
Q 012319 213 VDIIGAAETGSGKTLAF 229 (466)
Q Consensus 213 ~dvl~~a~TGSGKTl~~ 229 (466)
.++|+.||+|+|||...
T Consensus 202 ~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp CEEEEESCTTTTTHHHH
T ss_pred CCeEEECCCCCCHHHHH
Confidence 48999999999999765
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=53.63 E-value=5.8 Score=35.09 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.3
Q ss_pred cCCccEEEecCCCCchhHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~ 229 (466)
.+. -++++||+|||||...
T Consensus 11 ~~~-~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 11 RIP-PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCC-CEEEECCTTSCHHHHH
T ss_pred cCC-EEEEECCCCCCHHHHH
Confidence 344 8899999999999644
No 318
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=53.32 E-value=8.9 Score=34.48 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=15.5
Q ss_pred hcCCccEEEecCCCCchhHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+. -+.+.||+|+|||...
T Consensus 21 ~~G~-~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIY-PLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCC-CEEEECSTTSSHHHHH
T ss_pred CCCC-EEEEECCCCCCHHHHH
Confidence 4455 7889999999999654
No 319
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=52.56 E-value=8.9 Score=33.87 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=20.9
Q ss_pred CCcccEEEecccchh--hccCCHHHHHHHHH
Q 012319 338 LHTLSFFVLDEADRM--IENGHFRELQSIID 366 (466)
Q Consensus 338 l~~l~~lViDEad~l--l~~g~~~~l~~Il~ 366 (466)
+...++|||||+..| .+..|+..+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 466789999998877 44556666666664
No 320
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=52.54 E-value=10 Score=37.01 Aligned_cols=23 Identities=26% Similarity=0.083 Sum_probs=16.6
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
-+++.++.|+|||... +.++..+
T Consensus 63 iv~I~G~pGsGKTtLa-l~la~~~ 85 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVA-LHAVANA 85 (349)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH
Confidence 7899999999999554 4444333
No 321
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=52.34 E-value=6 Score=34.27 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|++|||||...
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7889999999999654
No 322
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=51.79 E-value=34 Score=35.50 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=50.3
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcC----CCcEEEEEECCCCH--HHHHHHHhc-CCc---EEEeCcHHHHHHHhCCC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKG----INVRVVPIVGGMST--EKQERLLKA-RPE---LVVGTPGRLWELMSGGE 332 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~----~~~~v~~~~gg~~~--~~~~~~l~~-~~d---IiV~TP~~L~~~l~~~~ 332 (466)
+.++||.++++.-|..+++.|...... .+-.+..++|.+.. ......+.. ..+ |+|+|. ++..|
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l~~G- 512 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LLTTG- 512 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TTTTT-
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hhhcC-
Confidence 458999999999999999999876431 12235566777643 112222333 223 777763 33333
Q ss_pred CccccCCcccEEEeccc
Q 012319 333 KHLVELHTLSFFVLDEA 349 (466)
Q Consensus 333 ~~~~~l~~l~~lViDEa 349 (466)
+++..+.+||++..
T Consensus 513 ---iDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 513 ---VDAPTCKNVVLARV 526 (590)
T ss_dssp ---CCCTTEEEEEEESC
T ss_pred ---ccchheeEEEEEec
Confidence 78899999998655
No 323
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=51.72 E-value=6.9 Score=33.01 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-.++.+|+|+|||..+
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5688999999999763
No 324
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=51.48 E-value=8.2 Score=37.09 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=28.7
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHh----cCCccEEEecCCCCchhHHH
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH----QGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~----~~~~dvl~~a~TGSGKTl~~ 229 (466)
...|.+++-...+.+.|...-. .|+. .|.++. ..+ .+++.||+|+|||+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~-~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWR-GILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCS-EEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCc-eEEEECCCCccHHHHH
Confidence 3578887766666665543200 0100 011111 123 7999999999999654
No 325
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=51.37 E-value=12 Score=37.98 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+|++||+|+|||...
T Consensus 52 ~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLA 67 (447)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 7999999999999654
No 326
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=51.36 E-value=11 Score=41.00 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=37.7
Q ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHcC--------CCcEEEEEECCCCHHHHHHHH---h--cCCcEEEeCcHHHHHHH
Q 012319 262 GHLRALIITPTRELALQVTDHLKEVAKG--------INVRVVPIVGGMSTEKQERLL---K--ARPELVVGTPGRLWELM 328 (466)
Q Consensus 262 ~~~~vLil~PtreLa~Qv~~~l~~l~~~--------~~~~v~~~~gg~~~~~~~~~l---~--~~~dIiV~TP~~L~~~l 328 (466)
.+.++||.++++..|..+.+.|...... .+.....++|+++...+...+ + +..+|||||- .+
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~~ 704 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 704 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----ch
Confidence 3468999999999999999998764211 233344456666655443333 2 3578999995 23
Q ss_pred hCCCCccccCCcccEEEecc
Q 012319 329 SGGEKHLVELHTLSFFVLDE 348 (466)
Q Consensus 329 ~~~~~~~~~l~~l~~lViDE 348 (466)
..| +++..+.+||.=.
T Consensus 705 ~~G----IDlp~v~~VI~yd 720 (797)
T 4a2q_A 705 DEG----IDIVQCNLVVLYE 720 (797)
T ss_dssp ----------CCCSEEEEES
T ss_pred hcC----CCchhCCEEEEeC
Confidence 333 7788999988633
No 327
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=51.04 E-value=9.5 Score=32.70 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|+.|||||...
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 8999999999999754
No 328
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=50.79 E-value=10 Score=33.87 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=13.7
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++|+.|||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 5689999999999864
No 329
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=50.79 E-value=29 Score=30.65 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHhcCCccEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHH
Q 012319 196 PTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 275 (466)
Q Consensus 196 pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreL 275 (466)
..+-|..++..++...+.-.++.++-|++||...+.-++...-. .|.++.||+|+..-
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~----------------------~Gr~V~vLAp~~~s 92 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE----------------------QGREVQIIAADRRS 92 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH----------------------TTCCEEEECSTTHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh----------------------cCeEEEEEcCchHH
Confidence 34678889988887766577888999999998864444333211 25589999999886
Q ss_pred HHHH
Q 012319 276 ALQV 279 (466)
Q Consensus 276 a~Qv 279 (466)
....
T Consensus 93 ~~~l 96 (189)
T 2l8b_A 93 QMNM 96 (189)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 330
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=50.63 E-value=11 Score=32.81 Aligned_cols=15 Identities=40% Similarity=0.284 Sum_probs=12.8
Q ss_pred cEEEecCCCCchhHH
Q 012319 214 DIIGAAETGSGKTLA 228 (466)
Q Consensus 214 dvl~~a~TGSGKTl~ 228 (466)
-+++++++|||||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 678899999999854
No 331
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=50.53 E-value=40 Score=31.90 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
-+++.+++|+|||....
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56778999999997653
No 332
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.52 E-value=18 Score=34.74 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
++++.||.|+|||...
T Consensus 48 ~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTI 63 (340)
T ss_dssp CEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999654
No 333
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=50.29 E-value=7.4 Score=33.75 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+++++|+|||||...
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5688999999999754
No 334
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=49.94 E-value=14 Score=35.60 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 7999999999999754
No 335
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=49.94 E-value=7 Score=38.43 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999765
No 336
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=49.80 E-value=7.5 Score=34.16 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|+.|||||...
T Consensus 20 ~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVG 35 (202)
T ss_dssp CEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999754
No 337
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=49.79 E-value=10 Score=47.14 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 202 ACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 202 ~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+..++..++ .++++||||||||...
T Consensus 1258 ~ll~~~l~~~~-~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1258 KIFYDLLNSKR-GIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHHHTC-EEEEECSTTSSHHHHH
T ss_pred HHHHHHHHCCC-eEEEECCCCCCHHHHH
Confidence 34555566666 9999999999999754
No 338
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=49.74 E-value=9.9 Score=45.04 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=53.9
Q ss_pred cEEEecCCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCeEEEEEeCcHHHHHHHHHHHHHHHcCCCcE
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 293 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~ 293 (466)
.|.+.+|.|||||... ++++....+. +-.++|+.+-.+|.... ++.+ ++.
T Consensus 1433 ~iei~g~~~sGkttl~-~~~~a~~~~~----------------------g~~~~~i~~e~~~~~~~---~~~~----Gv~ 1482 (1706)
T 3cmw_A 1433 IVEIYGPESSGKTTLT-LQVIAAAQRE----------------------GKTCAFIDAEHALDPIY---ARKL----GVD 1482 (1706)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHHHHT----------------------TCCEEEECTTSCCCHHH---HHHT----TCC
T ss_pred EEEEEcCCCCCHHHHH-HHHHHHHHhc----------------------CCeEEEEecCCCCCHHH---HHHc----CCC
Confidence 7899999999999665 5555443221 33688888877665543 3333 332
Q ss_pred EEEEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEecccchhhc
Q 012319 294 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 354 (466)
Q Consensus 294 v~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEad~ll~ 354 (466)
+ -+++|.-|..--++|.--. ..+.-..+++||||-+..|..
T Consensus 1483 ~-------------------~~l~~~~p~~~e~~l~~~~-~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1483 I-------------------DNLLCSQPDTGEQALEICD-ALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp G-------------------GGCEEECCSSHHHHHHHHH-HHHHHTCCSEEEESCSTTCCC
T ss_pred H-------------------HHeEEeCCCcHHHHHHHHH-HHHHcCCCCEEEEccHHhCCc
Confidence 2 1367777754322221100 012224578999999888763
No 339
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=49.73 E-value=9.2 Score=37.29 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||...
T Consensus 119 ~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIG 134 (357)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999754
No 340
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=49.72 E-value=17 Score=33.28 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=16.9
Q ss_pred CCccEEEecCCCCchhHHHHH
Q 012319 211 GKVDIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 211 ~~~dvl~~a~TGSGKTl~~~l 231 (466)
++.++++.++.|+|||.+.+-
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHH
Confidence 445799999999999977644
No 341
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=49.54 E-value=4.2 Score=37.62 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 46 ~vll~G~~GtGKT~la 61 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCBCSSCSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 6899999999999654
No 342
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=49.21 E-value=11 Score=40.87 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=15.4
Q ss_pred CccEEEecCCCCchhHHH
Q 012319 212 KVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 212 ~~dvl~~a~TGSGKTl~~ 229 (466)
..++|+.||+|+|||...
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 349999999999999764
No 343
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=49.16 E-value=5.9 Score=35.41 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=11.2
Q ss_pred ccEEEecccchhh
Q 012319 341 LSFFVLDEADRMI 353 (466)
Q Consensus 341 l~~lViDEad~ll 353 (466)
-.+|||||||.++
T Consensus 88 ~~vliIDEAq~l~ 100 (199)
T 2r2a_A 88 GSIVIVDEAQDVW 100 (199)
T ss_dssp TCEEEETTGGGTS
T ss_pred ceEEEEEChhhhc
Confidence 4689999999985
No 344
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=49.06 E-value=9.9 Score=32.63 Aligned_cols=16 Identities=25% Similarity=0.040 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+++.+++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 6688999999999764
No 345
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=48.88 E-value=7.9 Score=33.28 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|+.|||||...
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999754
No 346
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=48.75 E-value=11 Score=32.54 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=15.8
Q ss_pred hcCCccEEEecCCCCchhHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+. .++++|+.|||||...
T Consensus 7 ~~~~-~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTN-IIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSC-EEEEEECTTSSHHHHH
T ss_pred cCCC-EEEEECCCCCCHHHHH
Confidence 3344 7899999999999754
No 347
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=48.69 E-value=11 Score=33.22 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=15.4
Q ss_pred hcCCccEEEecCCCCchhHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+. -+.+.+|+|||||..+
T Consensus 18 ~~Ge-i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 18 AVGR-VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp -CCC-EEEEECSTTSSHHHHH
T ss_pred CCCC-EEEEECCCCCCHHHHH
Confidence 4554 7889999999999654
No 348
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=48.64 E-value=22 Score=44.17 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=31.6
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHH---HHHhcCCccEEEecCCCCchhHHHH
Q 012319 181 HPLLMKSIYRLGFKEPTPIQKACIP---AAAHQGKVDIIGAAETGSGKTLAFG 230 (466)
Q Consensus 181 ~~~l~~~l~~~g~~~pt~iQ~~~i~---~~l~~~~~dvl~~a~TGSGKTl~~~ 230 (466)
...+.+.+...|+ .+++.+..-+. .++..+. -|++.||||||||.++-
T Consensus 891 ~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~-gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQ-ALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCS-EEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcc-eEEEECCCCCCHHHHHH
Confidence 3456667777777 46665533222 2223444 89999999999998864
No 349
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.61 E-value=7.5 Score=39.35 Aligned_cols=54 Identities=17% Similarity=0.184 Sum_probs=29.3
Q ss_pred ccCccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 171 EFDAWNELRLHPLLMKSIYRLG---FKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
+...|.+++--....+.|...- +..|.-++... +...+ -+|+.||.|||||+..
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g----~~~pr-GvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG----IKPPK-GVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC----CCCCC-EEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC----CCCCC-eEEEECCCCCcHHHHH
Confidence 3457888875555555554321 11111111111 11223 7999999999999764
No 350
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=48.47 E-value=13 Score=32.36 Aligned_cols=15 Identities=27% Similarity=-0.026 Sum_probs=12.6
Q ss_pred cEEEecCCCCchhHH
Q 012319 214 DIIGAAETGSGKTLA 228 (466)
Q Consensus 214 dvl~~a~TGSGKTl~ 228 (466)
-+.+.++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999964
No 351
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=48.46 E-value=7.7 Score=36.70 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++|+.|||||...
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999754
No 352
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.23 E-value=7.7 Score=39.15 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+|+.||.|||||+..
T Consensus 208 GiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLV 223 (428)
T ss_dssp EEEEESCTTTTHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999764
No 353
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=48.05 E-value=15 Score=41.58 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=50.4
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHhcCCcEEEeC---cHHHHHHHhCCCCccccCC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGT---PGRLWELMSGGEKHLVELH 339 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~dIiV~T---P~~L~~~l~~~~~~~~~l~ 339 (466)
+.++||.|+|+.-|..++..|... +.+..++|+... .......+..+||||| .. .+..| +++.
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-----~~v~~lhg~~~~-~l~~F~~G~~~VLVaTas~Td----v~~rG----IDip 340 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-----FRIGIVTATKKG-DYEKFVEGEIDHLIGTAHYYG----TLVRG----LDLP 340 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-----SCEEECTTSSSH-HHHHHHHTSCSEEEEECC----------CC----SCCT
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-----cCeeEEeccHHH-HHHHHHcCCCcEEEEecCCCC----eeEec----cccC
Confidence 357999999999998888777543 678889998853 2233344678999994 22 33333 7788
Q ss_pred cc-cEEEecccc
Q 012319 340 TL-SFFVLDEAD 350 (466)
Q Consensus 340 ~l-~~lViDEad 350 (466)
.+ ++||.=.+-
T Consensus 341 ~VI~~VI~~~~P 352 (1054)
T 1gku_B 341 ERIRFAVFVGCP 352 (1054)
T ss_dssp TTCCEEEEESCC
T ss_pred CcccEEEEeCCC
Confidence 84 888865555
No 354
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=47.92 E-value=8.1 Score=36.23 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=25.9
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH-HhcCCccEEEecCCCCchhHHH
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPAA-AHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~-~~i~~~-l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..|.+++-...+.+.|...- ..|+.. .++..+ +.-.+ .+++.||+|+|||...
T Consensus 7 ~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~-GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCS-EEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCC-eEEEECCCCCcHHHHH
Confidence 56777776666666665421 112221 122221 01122 5899999999999654
No 355
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=47.82 E-value=10 Score=35.32 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=27.7
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHH-HhcCCccEEEecCCCCchhHHH
Q 012319 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAA-AHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 173 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ-~~~i~~~-l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..|.++.-...+...+..+-.. +. ...+..+ +.-.. .+++.+|+|+|||...
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~----~~~~~~l~~~~~~~~~-gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEF----LKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHH----HHCHHHHHHTTCCCCC-EEEEECCTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHH----HHCHHHHHHcCCCCCC-eEEEECCCcChHHHHH
Confidence 5677776666665555443110 00 1112111 01122 5899999999999654
No 356
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=47.73 E-value=10 Score=33.51 Aligned_cols=18 Identities=22% Similarity=-0.176 Sum_probs=14.7
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
-+++.+++|+|||.....
T Consensus 22 ~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 789999999999965433
No 357
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=47.56 E-value=8.7 Score=32.74 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|+.|||||...
T Consensus 10 ~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6889999999999754
No 358
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=47.14 E-value=8.8 Score=33.30 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|+.|||||.+.
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999754
No 359
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=46.98 E-value=51 Score=37.12 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.7
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHH
Q 012319 263 HLRALIITPTRELALQVTDHLKEVA 287 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~ 287 (466)
+.++||+|+++.-|..+++.|..+.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhh
Confidence 4689999999999999999999876
No 360
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=46.95 E-value=10 Score=33.38 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 31 ~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIA 46 (200)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7889999999999654
No 361
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=46.85 E-value=26 Score=39.75 Aligned_cols=74 Identities=7% Similarity=0.038 Sum_probs=48.4
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCC-----------------------------------CcEEEEEECCCCHHHHH
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGI-----------------------------------NVRVVPIVGGMSTEKQE 307 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~-----------------------------------~~~v~~~~gg~~~~~~~ 307 (466)
+.++||.++++.-|..++..|..+.-.. ...+..++|++....+.
T Consensus 441 ~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~ 520 (1108)
T 3l9o_A 441 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 520 (1108)
T ss_dssp CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHH
T ss_pred CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHH
Confidence 3479999999999998887775432110 11278899999876654
Q ss_pred HHH----hcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEE
Q 012319 308 RLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 345 (466)
Q Consensus 308 ~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lV 345 (466)
..+ .+..+|||||. .+..| +++..+.+||
T Consensus 521 ~v~~~F~~G~ikVLVAT~-----vla~G----IDiP~v~~VI 553 (1108)
T 3l9o_A 521 VIEILFQEGFLKVLFATE-----TFSIG----LNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHHHTCCCEEEEES-----CCCSC----CCC--CEEEE
T ss_pred HHHHHHhCCCCeEEEECc-----HHhcC----CCCCCceEEE
Confidence 433 35689999995 23333 6677777755
No 362
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=46.79 E-value=65 Score=32.28 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
.+++++++|+|||....
T Consensus 102 vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67778999999997653
No 363
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=46.76 E-value=10 Score=38.28 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=14.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||+|+|||...
T Consensus 65 ~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALA 80 (456)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCcCCHHHHH
Confidence 8999999999999765
No 364
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=46.08 E-value=9.3 Score=32.88 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.|+++|+.|||||...
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999765
No 365
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=45.82 E-value=8.8 Score=33.11 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|+.|||||...
T Consensus 7 ~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999754
No 366
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=45.46 E-value=12 Score=32.29 Aligned_cols=16 Identities=31% Similarity=0.229 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++|+.|||||...
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999654
No 367
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=45.25 E-value=13 Score=32.34 Aligned_cols=16 Identities=44% Similarity=0.507 Sum_probs=13.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+.+.+|+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999654
No 368
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=45.14 E-value=8.5 Score=37.77 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=0.0
Q ss_pred EEEecCCCCchhHHH
Q 012319 215 IIGAAETGSGKTLAF 229 (466)
Q Consensus 215 vl~~a~TGSGKTl~~ 229 (466)
.+++|+||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 369
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=45.09 E-value=14 Score=41.96 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=52.0
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEE-EEECCCCHHHHHHHHhcCCcEEEeCcHHHHHHHhCCCCccccCCc-c
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKGINVRVV-PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT-L 341 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~-~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~-l 341 (466)
.++||.+|++.-|..++..|... ++.+. .++|. .........+..+|||||... -+.+..| +++.. |
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~----g~~~~~~lhg~--rr~l~~F~~G~~~VLVatas~-TdvlarG----IDip~~V 378 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF--EKNFEDFKVGKINILIGVQAY-YGKLTRG----VDLPERI 378 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHT----TCCEEESSSSH--HHHHHHHHHTSCSEEEEETTT-HHHHCCS----CCCTTTC
T ss_pred CCEEEEECcHHHHHHHHHHHHhC----CCCeeeEecCc--HHHHHHHHCCCCCEEEEecCC-CCeeEec----CcCCCCC
Confidence 47999999999999999988875 67776 66663 212222234578999993110 0245554 78888 8
Q ss_pred cEEEecccch
Q 012319 342 SFFVLDEADR 351 (466)
Q Consensus 342 ~~lViDEad~ 351 (466)
++||.=..-.
T Consensus 379 ~~VI~~d~P~ 388 (1104)
T 4ddu_A 379 KYVIFWGTPS 388 (1104)
T ss_dssp CEEEEESCCE
T ss_pred CEEEEECCCC
Confidence 8888765554
No 370
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=44.64 E-value=12 Score=33.43 Aligned_cols=20 Identities=20% Similarity=-0.117 Sum_probs=15.8
Q ss_pred cEEEecCCCCchhHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPI 233 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpi 233 (466)
-+++.+|+|+|||.....-+
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 78999999999997654433
No 371
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=44.61 E-value=57 Score=33.44 Aligned_cols=16 Identities=38% Similarity=0.331 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.|++++++|+|||...
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6788899999999765
No 372
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=44.47 E-value=13 Score=32.97 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=13.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+.+.||+|||||...
T Consensus 24 ~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLS 39 (208)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6778999999999643
No 373
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=44.40 E-value=20 Score=34.69 Aligned_cols=23 Identities=22% Similarity=0.011 Sum_probs=16.7
Q ss_pred cEEEecCCCCchhHHHHHHHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
-+++.+|.|+|||... +.++..+
T Consensus 30 iteI~G~pGsGKTtL~-Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFG-LTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHH
Confidence 5789999999999544 4444444
No 374
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=44.27 E-value=11 Score=33.45 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999764
No 375
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=43.94 E-value=13 Score=31.78 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|+.|||||...
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999754
No 376
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=43.66 E-value=14 Score=32.49 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+++.|+.|||||...
T Consensus 27 ~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLA 42 (200)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7888999999999654
No 377
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=43.56 E-value=13 Score=37.56 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=28.6
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCcHHHHH-HHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKA-CIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 172 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~-~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
...|.++.-...+.+.|...-. .|+... .+.......+ .+++.||+|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~-~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWR-GILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCS-EEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCc-eEEEECCCCCCHHHHH
Confidence 3567777666666666544210 011000 0000011223 8999999999999654
No 378
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=43.44 E-value=13 Score=33.07 Aligned_cols=19 Identities=32% Similarity=0.069 Sum_probs=15.0
Q ss_pred cCCccEEEecCCCCchhHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~ 229 (466)
.+. -+.+.+|+|||||...
T Consensus 24 ~G~-~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQA-ITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSE-EEEEEESTTSSHHHHH
T ss_pred CCc-EEEEECCCCCCHHHHH
Confidence 344 7889999999999654
No 379
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=43.09 E-value=10 Score=32.56 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.|++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999654
No 380
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=42.86 E-value=12 Score=33.26 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999765
No 381
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=42.53 E-value=10 Score=34.00 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|++|||||...
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999764
No 382
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=42.49 E-value=12 Score=31.69 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.++.|||||...
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6889999999999754
No 383
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=42.27 E-value=14 Score=32.15 Aligned_cols=30 Identities=17% Similarity=0.488 Sum_probs=24.3
Q ss_pred cccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 340 TLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 340 ~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
.-.++|+||.+.-||......+..++..+.
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~ 115 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESS 115 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhc
Confidence 347999999999998877788887776664
No 384
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=42.08 E-value=21 Score=37.48 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=18.7
Q ss_pred HHHHHhcCCccEEEecCCCCchhHHH
Q 012319 204 IPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 204 i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
+...+..+. .+++.+|+|+|||..+
T Consensus 53 l~~~i~~g~-~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 53 IKTAANQKR-HVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHHTTC-CEEEECCTTSSHHHHH
T ss_pred ccccccCCC-EEEEEeCCCCCHHHHH
Confidence 333345565 9999999999999654
No 385
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=42.05 E-value=14 Score=32.73 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+.+.|++|||||...
T Consensus 7 ~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 7 VITIDGPSGAGKGTLC 22 (227)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999754
No 386
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=42.00 E-value=14 Score=32.56 Aligned_cols=16 Identities=44% Similarity=0.146 Sum_probs=13.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+.+.|++|||||...
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999654
No 387
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=41.87 E-value=12 Score=33.31 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-.++.||+|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5688999999999764
No 388
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=41.86 E-value=12 Score=31.87 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++++.|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999754
No 389
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=41.85 E-value=9.3 Score=34.42 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=11.1
Q ss_pred cCCccEEEecCCCCchhHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~ 229 (466)
.+. -+.+.||+|||||...
T Consensus 26 ~G~-ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGV-ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCC-EEEEECSCC----CHH
T ss_pred CCC-EEEEECCCCCCHHHHH
Confidence 444 6788999999999654
No 390
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=41.72 E-value=11 Score=34.47 Aligned_cols=32 Identities=6% Similarity=0.177 Sum_probs=24.8
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+.+-++|++||--.-+|......+..++..+.
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45567999999998888777777777776664
No 391
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.67 E-value=11 Score=37.93 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=29.9
Q ss_pred ccCccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 171 EFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 171 ~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
+-.+|.+++=-..+.+.|... -+..|.-++...+ ...+ -+|+.||.|+|||+..
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi----~~pr-GvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI----KPPK-GVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC----CCCS-EEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCC-CCceECCCCchHHHHH
Confidence 346788886445554444432 1122322222111 1223 7999999999999754
No 392
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.59 E-value=14 Score=46.57 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCccEEEecCCCCchhHH
Q 012319 201 KACIPAAAHQGKVDIIGAAETGSGKTLA 228 (466)
Q Consensus 201 ~~~i~~~l~~~~~dvl~~a~TGSGKTl~ 228 (466)
...+..++..++ .|+++||||+|||..
T Consensus 1294 ~~ll~~ll~~~~-pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1294 VDVLHAWLSEHR-PLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHHHHHHHTTC-CCEEESSTTSSHHHH
T ss_pred HHHHHHHHHCCC-cEEEECCCCCCHHHH
Confidence 445566666776 999999999999943
No 393
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=41.36 E-value=12 Score=32.67 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.|+++|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999754
No 394
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.29 E-value=14 Score=37.96 Aligned_cols=16 Identities=31% Similarity=0.227 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||+|+|||.+.
T Consensus 79 ~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAA 94 (516)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 8999999999999664
No 395
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=41.25 E-value=16 Score=34.17 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=16.0
Q ss_pred hcCCccEEEecCCCCchhHHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAFG 230 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~~ 230 (466)
..+. -+++.|++|+|||....
T Consensus 33 ~~G~-~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 33 RGGE-VIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp CTTC-EEEEEESTTSSHHHHHH
T ss_pred CCCe-EEEEEeCCCCCHHHHHH
Confidence 3454 78899999999996543
No 396
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=41.01 E-value=13 Score=31.98 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.|+++|+.|||||...
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIG 19 (184)
T ss_dssp SEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999764
No 397
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=40.88 E-value=12 Score=32.87 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.7
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+.+.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5789999999999754
No 398
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=40.88 E-value=68 Score=37.12 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=25.4
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+++-.++|+||+=.-+|......+...+..+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAA 601 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 56678999999999888887777777776653
No 399
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=40.66 E-value=15 Score=31.43 Aligned_cols=16 Identities=25% Similarity=0.246 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|+.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999754
No 400
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=40.54 E-value=12 Score=33.97 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 29 ~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVC 44 (246)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999754
No 401
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=40.25 E-value=17 Score=37.09 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=17.7
Q ss_pred cCCccEEEecCCCCchhHHHHHHHHHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAFGLPIMQRL 237 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~~lpil~~l 237 (466)
.+. -+++.|++|+|||... +.++.++
T Consensus 241 ~G~-l~li~G~pG~GKT~la-l~~a~~~ 266 (503)
T 1q57_A 241 GGE-VIMVTSGSGMVMSTFV-RQQALQW 266 (503)
T ss_dssp TTC-EEEEEESSCHHHHHHH-HHHHHHH
T ss_pred CCe-EEEEeecCCCCchHHH-HHHHHHH
Confidence 344 7889999999999544 4444333
No 402
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=40.07 E-value=15 Score=32.20 Aligned_cols=16 Identities=38% Similarity=0.075 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+.+.|++|||||...
T Consensus 23 ~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLA 38 (207)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6788999999999654
No 403
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=39.80 E-value=14 Score=31.02 Aligned_cols=16 Identities=25% Similarity=-0.020 Sum_probs=13.7
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999654
No 404
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=39.77 E-value=16 Score=34.07 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||.|+|||...
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 6999999999999654
No 405
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=39.67 E-value=13 Score=32.43 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.|+++|+.|||||...
T Consensus 22 ~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQA 37 (201)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999754
No 406
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=39.48 E-value=18 Score=39.14 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.9
Q ss_pred ccEEEecCCCCchhHHH
Q 012319 213 VDIIGAAETGSGKTLAF 229 (466)
Q Consensus 213 ~dvl~~a~TGSGKTl~~ 229 (466)
.+++++||+|+|||...
T Consensus 208 ~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIA 224 (758)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CCeEEEcCCCCCHHHHH
Confidence 48999999999999764
No 407
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=39.38 E-value=12 Score=32.49 Aligned_cols=16 Identities=31% Similarity=0.142 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 6 ~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQC 21 (204)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 7899999999999765
No 408
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=39.04 E-value=13 Score=34.23 Aligned_cols=16 Identities=31% Similarity=0.179 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.|+++|+.|||||...
T Consensus 6 lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999754
No 409
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=38.84 E-value=14 Score=32.39 Aligned_cols=16 Identities=31% Similarity=0.144 Sum_probs=13.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999999754
No 410
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=38.79 E-value=26 Score=33.07 Aligned_cols=28 Identities=7% Similarity=-0.077 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCccEEEecCCCCchhHH
Q 012319 200 QKACIPAAAHQGKVDIIGAAETGSGKTLA 228 (466)
Q Consensus 200 Q~~~i~~~l~~~~~dvl~~a~TGSGKTl~ 228 (466)
+...+..++..+. .+++.|+.|+|||..
T Consensus 20 el~~L~~~l~~~~-~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 20 ESRKLEESLENYP-LTLLLGIRRVGKSSL 47 (350)
T ss_dssp HHHHHHHHHHHCS-EEEEECCTTSSHHHH
T ss_pred HHHHHHHHHhcCC-eEEEECCCcCCHHHH
Confidence 3333444444444 899999999999954
No 411
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=38.76 E-value=9.3 Score=33.20 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=13.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999654
No 412
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=38.45 E-value=17 Score=34.81 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=15.6
Q ss_pred hcCCccEEEecCCCCchhHHH
Q 012319 209 HQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 209 ~~~~~dvl~~a~TGSGKTl~~ 229 (466)
..+. -+.+.+|+|||||...
T Consensus 124 ~~Ge-~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 124 PKKN-CLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TTCS-EEEEECSSSSSHHHHH
T ss_pred cCCC-EEEEECCCCCcHHHHH
Confidence 3454 7889999999999543
No 413
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=37.88 E-value=15 Score=37.30 Aligned_cols=16 Identities=38% Similarity=0.401 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
++++.+|+|+|||...
T Consensus 52 ~iLl~GppGtGKT~la 67 (444)
T 1g41_A 52 NILMIGPTGVGKTEIA 67 (444)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 8999999999999754
No 414
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=37.84 E-value=19 Score=31.16 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 5789999999999654
No 415
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=37.68 E-value=14 Score=33.82 Aligned_cols=27 Identities=4% Similarity=0.162 Sum_probs=19.3
Q ss_pred CcccEEEecccchhhccCCHHHHHHHH
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSII 365 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il 365 (466)
.+-++|++||.=.-+|......+..++
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 445799999999888765555555544
No 416
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=37.58 E-value=15 Score=31.61 Aligned_cols=16 Identities=38% Similarity=0.191 Sum_probs=13.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999654
No 417
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=37.39 E-value=14 Score=37.75 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=14.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.+|+|+|||+..
T Consensus 51 gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLA 66 (476)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999764
No 418
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=37.33 E-value=14 Score=35.57 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-.+++||+|+|||..+
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999764
No 419
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=37.31 E-value=47 Score=36.33 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=37.8
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh--cCCcEEEeCc
Q 012319 265 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK--ARPELVVGTP 321 (466)
Q Consensus 265 ~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~--~~~dIiV~TP 321 (466)
.+||.+.|++-+..+...|... ++.+.+++|............ ....|+|||.
T Consensus 443 pvLVft~sie~se~Ls~~L~~~----gi~~~vLnak~~~rEa~iia~agr~G~VtIATn 497 (853)
T 2fsf_A 443 PVLVGTISIEKSELVSNELTKA----GIKHNVLNAKFHANEAAIVAQAGYPAAVTIATN 497 (853)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT----TCCCEECCTTCHHHHHHHHHTTTSTTCEEEEES
T ss_pred CEEEEECcHHHHHHHHHHHHHC----CCCEEEecCChhHHHHHHHHhcCCCCeEEEecc
Confidence 4999999999999988888775 778888888864332221111 2347999985
No 420
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=37.30 E-value=15 Score=31.99 Aligned_cols=16 Identities=31% Similarity=0.154 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-|++.|+.|||||...
T Consensus 6 ~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6889999999999654
No 421
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=37.14 E-value=1e+02 Score=27.00 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=38.2
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHH--HHHHHHhcCCcEEEeCcHHHHHHHh
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE--KQERLLKARPELVVGTPGRLWELMS 329 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~--~~~~~l~~~~dIiV~TP~~L~~~l~ 329 (466)
..+.++++|...|...+.+.+..+ +..+....++.... .-... ..++||||+- |.-..+|.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~----~~~i~i~~~~l~~~v~~a~~~-~~~~dVIISR-Ggta~~lr 66 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEK----NFIPITKTASLTRASKIAFGL-QDEVDAIISR-GATSDYIK 66 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHH----TCEEEEEECCHHHHHHHHHHH-TTTCSEEEEE-HHHHHHHH
T ss_pred CCcEEEEEccHHHHHHHHHHHhhh----CCceEEEECCHHHHHHHHHHh-cCCCeEEEEC-ChHHHHHH
Confidence 357999999999988666655554 33555566664322 22222 5688987765 44455564
No 422
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=37.05 E-value=23 Score=31.89 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.6
Q ss_pred ccEEEecCCCCchhHHH
Q 012319 213 VDIIGAAETGSGKTLAF 229 (466)
Q Consensus 213 ~dvl~~a~TGSGKTl~~ 229 (466)
..+++.|+.|||||...
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 38999999999999654
No 423
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=37.00 E-value=15 Score=32.56 Aligned_cols=16 Identities=25% Similarity=0.115 Sum_probs=13.7
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999754
No 424
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=36.90 E-value=23 Score=31.15 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+.+.+|+|+|||...
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 5788999999999754
No 425
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=36.88 E-value=16 Score=30.78 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
++++.++.|||||.+.
T Consensus 9 ~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLA 24 (168)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999765
No 426
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=36.67 E-value=36 Score=32.21 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=17.8
Q ss_pred HHh-cCCccEEEecCCCCchhHHHHH
Q 012319 207 AAH-QGKVDIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 207 ~l~-~~~~dvl~~a~TGSGKTl~~~l 231 (466)
+|. +..++++..+.||+|||.-.++
T Consensus 87 cLd~GyNvcIfSyGQTGsGKT~ral~ 112 (298)
T 2o0a_A 87 CLNQKKNFNLISLSTTPHGSLRESLI 112 (298)
T ss_dssp HHHTTCCEEEEEECSSCCHHHHHHHH
T ss_pred HHhCCCceEEEEECCCCCCccHHHHH
Confidence 346 5556788899999999944433
No 427
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=36.43 E-value=19 Score=32.05 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999764
No 428
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=36.36 E-value=19 Score=31.77 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=20.5
Q ss_pred CcHHHHHHHHHHHhcCCccEEEecCCCCchhHHH
Q 012319 196 PTPIQKACIPAAAHQGKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 196 pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~~ 229 (466)
.++.++..+. + ..+. .++++|+.|||||...
T Consensus 12 ~~~~~r~~~~-~-~~~~-~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTELR-N-QRGL-TIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHHHH-T-SSCE-EEEEECSTTSSHHHHH
T ss_pred cCHHHhhccc-C-CCCC-EEEEECCCCCCHHHHH
Confidence 3455555532 2 3443 7889999999999654
No 429
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=36.01 E-value=13 Score=31.69 Aligned_cols=16 Identities=31% Similarity=0.121 Sum_probs=10.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 7 ~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 7 IIWINGPFGVGKTHTA 22 (183)
T ss_dssp EEEEECCC----CHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7889999999999765
No 430
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=35.97 E-value=83 Score=34.69 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=37.7
Q ss_pred EEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHHh--cCCcEEEeCc
Q 012319 265 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK--ARPELVVGTP 321 (466)
Q Consensus 265 ~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~--~~~dIiV~TP 321 (466)
.+||.+.|++-+..+...|... ++.+.+++|........-... ....|+|||.
T Consensus 462 pvLVft~Sie~sE~Ls~~L~~~----Gi~~~vLnak~~~rEa~iia~agr~G~VtIATn 516 (922)
T 1nkt_A 462 PVLIGTTSVERSEYLSRQFTKR----RIPHNVLNAKYHEQEATIIAVAGRRGGVTVATN 516 (922)
T ss_dssp CEEEEESCHHHHHHHHHHHHHT----TCCCEEECSSCHHHHHHHHHTTTSTTCEEEEET
T ss_pred cEEEEECCHHHHHHHHHHHHHC----CCCEEEecCChhHHHHHHHHhcCCCCeEEEecc
Confidence 4999999999999988888775 778888998864322211111 2347999984
No 431
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=35.93 E-value=17 Score=31.36 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=13.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999765
No 432
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=35.82 E-value=20 Score=31.52 Aligned_cols=16 Identities=25% Similarity=-0.029 Sum_probs=13.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+.+.|++|||||...
T Consensus 24 ~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6788999999999654
No 433
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=35.79 E-value=17 Score=31.05 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.7
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.++.|||||...
T Consensus 7 ~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6789999999999754
No 434
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=35.61 E-value=22 Score=30.57 Aligned_cols=16 Identities=31% Similarity=0.191 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|+.|||||...
T Consensus 15 ~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6889999999999754
No 435
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=35.58 E-value=16 Score=32.98 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=26.7
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+..-++|++||--.-+|......+..++..+.
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 180 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 45678999999999999988888888887663
No 436
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=35.49 E-value=20 Score=34.07 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+.+.+|+|+|||...
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6778999999999764
No 437
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=35.20 E-value=15 Score=39.65 Aligned_cols=16 Identities=38% Similarity=0.277 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||||+|||...
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999765
No 438
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=35.14 E-value=15 Score=31.46 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=13.5
Q ss_pred ccEEEecCCCCchhH
Q 012319 213 VDIIGAAETGSGKTL 227 (466)
Q Consensus 213 ~dvl~~a~TGSGKTl 227 (466)
..|++.|.+|+|||.
T Consensus 22 ~ki~v~G~~~~GKSs 36 (190)
T 2h57_A 22 VHVLCLGLDNSGKTT 36 (190)
T ss_dssp EEEEEEECTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 489999999999995
No 439
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=35.09 E-value=21 Score=34.02 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+.+.+|+|||||...
T Consensus 104 vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTI 119 (304)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6778899999999654
No 440
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=34.97 E-value=16 Score=33.19 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=18.3
Q ss_pred CCcccEEEecccchhhccCCHHHHHH
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQS 363 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~ 363 (466)
+.+-+++++||.-.-+|......+..
T Consensus 146 ~~~p~lllLDEPts~LD~~~~~~i~~ 171 (229)
T 2pze_A 146 YKDADLYLLDSPFGYLDVLTEKEIFE 171 (229)
T ss_dssp HSCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred hcCCCEEEEECcccCCCHHHHHHHHH
Confidence 35568999999998887655544444
No 441
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=34.84 E-value=18 Score=32.11 Aligned_cols=16 Identities=25% Similarity=0.219 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6789999999999754
No 442
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=34.83 E-value=21 Score=30.92 Aligned_cols=16 Identities=31% Similarity=0.194 Sum_probs=13.8
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.|.+.+++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6788999999999764
No 443
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=34.73 E-value=2.3e+02 Score=29.65 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=50.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH---hcC-Cc---EEEeCcHHHHHHHhCCCCcc
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---KAR-PE---LVVGTPGRLWELMSGGEKHL 335 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l---~~~-~d---IiV~TP~~L~~~l~~~~~~~ 335 (466)
+-++||.+.++..+..+...|... ++.+..++|+++.......+ ..+ .. +||+|- . ... .
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~-a----~g~----G 482 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNR----RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK-A----GGC----G 482 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHH----TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG-G----SCT----T
T ss_pred CCEEEEEEccHHHHHHHHHHHHHC----CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc-c----ccC----C
Confidence 348999999999888877777654 67888899999876554443 332 22 555552 2 222 3
Q ss_pred ccCCcccEEEecccc
Q 012319 336 VELHTLSFFVLDEAD 350 (466)
Q Consensus 336 ~~l~~l~~lViDEad 350 (466)
++|..+..||+=+.+
T Consensus 483 lnl~~a~~Vi~~d~~ 497 (644)
T 1z3i_X 483 LNLIGANRLVMFDPD 497 (644)
T ss_dssp CCCTTEEEEEECSCC
T ss_pred cccccCCEEEEECCC
Confidence 778888888765544
No 444
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=34.34 E-value=28 Score=32.15 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.5
Q ss_pred CCccEEEecCCCCchhHHH
Q 012319 211 GKVDIIGAAETGSGKTLAF 229 (466)
Q Consensus 211 ~~~dvl~~a~TGSGKTl~~ 229 (466)
+. .+++.|+.|||||...
T Consensus 48 g~-~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 48 GR-SMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TC-CEEEECSTTSCHHHHH
T ss_pred CC-EEEEECCCCCCHHHHH
Confidence 44 8999999999999764
No 445
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=34.20 E-value=18 Score=32.38 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=13.7
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999754
No 446
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=34.16 E-value=16 Score=34.32 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=25.0
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+..-++||+||-=.-||......+..++..+.
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 45568999999998888777777777776653
No 447
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=34.05 E-value=20 Score=32.91 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+.+.+|+|||||...
T Consensus 29 ~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 29 VITVDGPSGAGKGTLC 44 (252)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7889999999999665
No 448
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=33.95 E-value=17 Score=33.67 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=25.5
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+.+-++|++||-=.-+|......+..++..+.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 200 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 35568999999998888877788888877664
No 449
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=33.91 E-value=16 Score=31.04 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.8
Q ss_pred ccEEEecCCCCchhHH
Q 012319 213 VDIIGAAETGSGKTLA 228 (466)
Q Consensus 213 ~dvl~~a~TGSGKTl~ 228 (466)
..|++.|.+|+|||..
T Consensus 22 ~~i~v~G~~~~GKSsl 37 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTI 37 (181)
T ss_dssp EEEEEEEETTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3899999999999953
No 450
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=33.88 E-value=23 Score=33.53 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-|.++|++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999654
No 451
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=33.76 E-value=16 Score=33.08 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=24.6
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+..-++|++||--.-+|......+..++..+.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~ 187 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 45568999999998888777777777776653
No 452
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=33.71 E-value=24 Score=31.31 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 6 ~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQA 21 (220)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999754
No 453
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=33.60 E-value=17 Score=33.93 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=23.9
Q ss_pred cccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 340 TLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 340 ~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+-++|++||-=.-||......+..++..+.
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 567999999988888777777777776664
No 454
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=33.49 E-value=17 Score=33.18 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=25.2
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+.+-++|++||--.-+|......+..++..+.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 186 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 45568999999998888877777777776653
No 455
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=33.46 E-value=17 Score=31.80 Aligned_cols=16 Identities=25% Similarity=0.071 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-|+++|+.|||||...
T Consensus 12 ~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQS 27 (212)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 7899999999999754
No 456
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=33.44 E-value=14 Score=33.98 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++|+.|||||...
T Consensus 34 ~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEESCGGGTTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999754
No 457
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=33.24 E-value=17 Score=39.16 Aligned_cols=16 Identities=38% Similarity=0.356 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.++++||||+|||...
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6999999999999765
No 458
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=33.07 E-value=18 Score=37.20 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.+|+|+|||+..
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999654
No 459
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=33.06 E-value=18 Score=33.63 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=25.2
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+.+-++|++||--.-||......+..++..+.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 35568999999998888877777777776663
No 460
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=33.06 E-value=20 Score=33.22 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=24.8
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
.+-++|++||.-.-+|......+..++..+.
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~ 202 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 4457999999998888877778888777664
No 461
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=33.02 E-value=65 Score=29.21 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=19.7
Q ss_pred CcHHHHHHHhCCCCccccCCcccEEEeccc
Q 012319 320 TPGRLWELMSGGEKHLVELHTLSFFVLDEA 349 (466)
Q Consensus 320 TP~~L~~~l~~~~~~~~~l~~l~~lViDEa 349 (466)
||..|...|... .++++++.++-+||-
T Consensus 45 tp~~~y~~L~~~---~i~w~~v~~f~~DEr 71 (232)
T 3lhi_A 45 SPIAFFNALSQK---DLDWKNVGITLADER 71 (232)
T ss_dssp TTHHHHHHHHTS---CCCGGGEEEEESEEE
T ss_pred CHHHHHHHHHhc---CCCchheEEEEeeec
Confidence 566677766542 377889999999994
No 462
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=32.78 E-value=3.5e+02 Score=26.14 Aligned_cols=88 Identities=9% Similarity=0.202 Sum_probs=51.9
Q ss_pred HHHHHHhcCCccEEEecCCCC-chhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCC-eEEEEEeCcHHHHHHHH
Q 012319 203 CIPAAAHQGKVDIIGAAETGS-GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVT 280 (466)
Q Consensus 203 ~i~~~l~~~~~dvl~~a~TGS-GKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vLil~PtreLa~Qv~ 280 (466)
.+...+.+. .++|.|.||+ |..++ ..|+.. + -.++++.-...-..++.
T Consensus 28 ~~~~~~~~k--~vLVTGatG~IG~~l~------~~L~~~----------------------g~~~V~~~~r~~~~~~~~~ 77 (399)
T 3nzo_A 28 ELQSVVSQS--RFLVLGGAGSIGQAVT------KEIFKR----------------------NPQKLHVVDISENNMVELV 77 (399)
T ss_dssp HHHHHHHTC--EEEEETTTSHHHHHHH------HHHHTT----------------------CCSEEEEECSCHHHHHHHH
T ss_pred HHHHHhCCC--EEEEEcCChHHHHHHH------HHHHHC----------------------CCCEEEEEECCcchHHHHH
Confidence 444444444 8999888875 55433 333211 2 25666666666566666
Q ss_pred HHHHHHHcCCCcEEEEEECCCCHHHHHHHHh--cCCcEEEeC
Q 012319 281 DHLKEVAKGINVRVVPIVGGMSTEKQERLLK--ARPELVVGT 320 (466)
Q Consensus 281 ~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l~--~~~dIiV~T 320 (466)
..+.......+..+..+.++.........+. .++|+||-.
T Consensus 78 ~~l~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 119 (399)
T 3nzo_A 78 RDIRSSFGYINGDFQTFALDIGSIEYDAFIKADGQYDYVLNL 119 (399)
T ss_dssp HHHHHHTCCCSSEEEEECCCTTSHHHHHHHHHCCCCSEEEEC
T ss_pred HHHHHhcCCCCCcEEEEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 6666654433456777777766554433333 579999843
No 463
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=32.50 E-value=21 Score=32.88 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=24.7
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDML 368 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l 368 (466)
+.+-++|++||.-.-+|......+..++..+
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4556899999999888887777777777665
No 464
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=32.47 E-value=20 Score=33.57 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=13.9
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-++++|+.|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999764
No 465
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=32.42 E-value=19 Score=33.56 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=26.1
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+.+-++|++||--.-+|......+..++..+.
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 45668999999999888888888888877664
No 466
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=32.25 E-value=19 Score=31.47 Aligned_cols=16 Identities=19% Similarity=0.094 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-|+++|+.|||||...
T Consensus 11 ~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQS 26 (215)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999764
No 467
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=32.19 E-value=21 Score=37.06 Aligned_cols=16 Identities=31% Similarity=0.175 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.+|+|+|||...
T Consensus 110 ~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLA 125 (543)
T ss_dssp EEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999654
No 468
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=31.93 E-value=16 Score=31.37 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=15.3
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEecCCCCchhHH
Q 012319 195 EPTPIQKACIPAAAHQGKVDIIGAAETGSGKTLA 228 (466)
Q Consensus 195 ~pt~iQ~~~i~~~l~~~~~dvl~~a~TGSGKTl~ 228 (466)
++++-|....+.. ......|++.|++|+|||..
T Consensus 6 ~~~~~~~~~~~~~-~~~~~ki~v~G~~~~GKSsl 38 (188)
T 1zd9_A 6 HHHHHSSGLVPRG-SKEEMELTLVGLQYSGKTTF 38 (188)
T ss_dssp --------------CCEEEEEEEECSTTSSHHHH
T ss_pred ccccccccccccC-CCCccEEEEECCCCCCHHHH
Confidence 3555666666665 33334899999999999943
No 469
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=31.89 E-value=28 Score=31.04 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.5
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||.||||+...
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999998654
No 470
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=31.72 E-value=19 Score=33.31 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=25.6
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+.+-++|++||--.-+|......+..++..+.
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 45668999999998888877778887776663
No 471
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=31.59 E-value=26 Score=31.82 Aligned_cols=16 Identities=31% Similarity=0.218 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 31 ~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQS 46 (243)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999654
No 472
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=31.44 E-value=20 Score=33.53 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=26.7
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+..-++|++||.-.-||......+..++..+.
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 45668999999999988888888888887774
No 473
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=31.31 E-value=19 Score=37.83 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=14.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
++++.||+|+|||...
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 7999999999999643
No 474
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=31.20 E-value=20 Score=33.11 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=22.6
Q ss_pred EEEecccchhhccCCHHHHHHHHHhCC
Q 012319 343 FFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 343 ~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+|++||--.-+|......+..++..+.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~ 180 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALS 180 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 999999999888888888888876663
No 475
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=31.17 E-value=19 Score=33.21 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=25.7
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+.+-++|++||--.-+|......+..++..+.
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 175 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLA 175 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 35568999999999888888888888876664
No 476
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=31.06 E-value=25 Score=32.68 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=25.5
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
.+-++|++||--.-||......+..++..+.
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 211 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLR 211 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 3457999999999888888888888887774
No 477
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=31.04 E-value=24 Score=35.10 Aligned_cols=17 Identities=18% Similarity=-0.097 Sum_probs=14.4
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
-+++.+|+|+|||....
T Consensus 180 i~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCH 196 (400)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEEcCCCCChHHHHH
Confidence 78999999999996554
No 478
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=30.95 E-value=19 Score=32.89 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=24.3
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
.+-++|++||.-.-+|......+..++..+.
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 156 RNPKILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp HCCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 3457999999999888888777777776653
No 479
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=30.93 E-value=29 Score=35.64 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=20.3
Q ss_pred cCCccEEEecCCCCchhHHHHHHHHHHHH
Q 012319 210 QGKVDIIGAAETGSGKTLAFGLPIMQRLL 238 (466)
Q Consensus 210 ~~~~dvl~~a~TGSGKTl~~~lpil~~l~ 238 (466)
.+. -+++.+|+|||||....+.++..++
T Consensus 38 ~Ge-~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGR-STLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTS-EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCe-EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 444 7899999999999766554455554
No 480
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=30.88 E-value=20 Score=33.33 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=25.6
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+.+-++|++||-=.-||......+..++..+.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 206 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45668999999998888877778887776663
No 481
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=30.73 E-value=26 Score=32.22 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=25.6
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
.+-++|++||.-.-+|......+..++..+.
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 190 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMR 190 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 4457999999999998888888888887764
No 482
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=30.56 E-value=16 Score=34.88 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=23.7
Q ss_pred CcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 339 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 339 ~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
.+-++||+||+=.-+|......|..++..+.
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~ 237 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVC 237 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 4457999999998888777777777776653
No 483
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=30.42 E-value=21 Score=33.62 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=24.7
Q ss_pred CCcccEEEecccchhhccCCHHHHHHHHHhCC
Q 012319 338 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 369 (466)
Q Consensus 338 l~~l~~lViDEad~ll~~g~~~~l~~Il~~l~ 369 (466)
+..-++|++||-=.-||......+..++..+.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 208 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLS 208 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 35568999999998888777777777776653
No 484
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=30.40 E-value=27 Score=34.16 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHHH
Q 012319 214 DIIGAAETGSGKTLAFG 230 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~ 230 (466)
-+.+.+|+|+|||....
T Consensus 159 vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 57789999999997653
No 485
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=30.34 E-value=30 Score=33.91 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=13.4
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
++++.|+||||||...-.
T Consensus 37 ~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CEEEECCTTSSHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHH
Confidence 788888888888865433
No 486
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=30.31 E-value=19 Score=39.54 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=14.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.||||+|||...
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999754
No 487
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=30.17 E-value=30 Score=30.65 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=14.0
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+++.|+.|||||...
T Consensus 7 ~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 7 NLILIGAPGSGKGTQC 22 (217)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999754
No 488
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=30.16 E-value=29 Score=31.44 Aligned_cols=16 Identities=31% Similarity=0.158 Sum_probs=13.4
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+-+.||+|||||...
T Consensus 27 iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999764
No 489
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=30.13 E-value=7.7 Score=39.10 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=47.3
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeCcHHHHHHHhCCCCccccC
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 338 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 338 (466)
+.++||.++++..+..+.+.|. +..++|+++.......+ ....+|||||- ++..| +++
T Consensus 349 ~~k~lvF~~~~~~~~~l~~~l~---------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~-----~~~~G----ldl 410 (472)
T 2fwr_A 349 KDKIIIFTRHNELVYRISKVFL---------IPAITHRTSREEREEILEGFRTGRFRAIVSSQ-----VLDEG----IDV 410 (472)
T ss_dssp SSCBCCBCSCHHHHHHHHHHTT---------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSS-----CCCSS----SCS
T ss_pred CCcEEEEECCHHHHHHHHHHhC---------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcC-----chhcC----ccc
Confidence 4579999999998888877662 33467777654443322 25789999993 23333 788
Q ss_pred CcccEEEeccc
Q 012319 339 HTLSFFVLDEA 349 (466)
Q Consensus 339 ~~l~~lViDEa 349 (466)
..+.+||+=..
T Consensus 411 p~~~~Vi~~~~ 421 (472)
T 2fwr_A 411 PDANVGVIMSG 421 (472)
T ss_dssp CCBSEEEEECC
T ss_pred ccCcEEEEECC
Confidence 89998887443
No 490
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=29.92 E-value=41 Score=33.73 Aligned_cols=18 Identities=33% Similarity=0.259 Sum_probs=14.8
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+++++++|+|||....-
T Consensus 101 vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CEEEECCSSSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 788999999999976533
No 491
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=29.73 E-value=33 Score=33.19 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=14.5
Q ss_pred cEEEecCCCCchhHHHHH
Q 012319 214 DIIGAAETGSGKTLAFGL 231 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~~l 231 (466)
.+++.+|+|+|||...+.
T Consensus 125 viLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp EEEEECSCSSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 678999999999965433
No 492
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=29.68 E-value=23 Score=31.13 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+.+.|+.|||||.+.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999765
No 493
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=29.62 E-value=38 Score=32.01 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.1
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+.+.|++|||||...
T Consensus 82 iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999654
No 494
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=29.50 E-value=25 Score=30.54 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=13.6
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
.+.+.++.|||||...
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999754
No 495
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=29.45 E-value=91 Score=31.22 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=51.5
Q ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHcCCCcEEEEEECCCCHHHHHHHH---hcC--Cc-EEEeCcHHHHHHHhCCCCccc
Q 012319 263 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---KAR--PE-LVVGTPGRLWELMSGGEKHLV 336 (466)
Q Consensus 263 ~~~vLil~PtreLa~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~l---~~~--~d-IiV~TP~~L~~~l~~~~~~~~ 336 (466)
+-++||.+.++..+..+...|.... ++.+..++|+++.......+ ..+ .. |||+|- .+.. .+
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~~---~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~-----~~~~----Gl 408 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-----AGGF----GI 408 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH---TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC-----CC-C----CC
T ss_pred CCcEEEEEehHHHHHHHHHHHHHhh---CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc-----cccC----CC
Confidence 4479999999999988888887642 56677889999875554433 233 33 566663 1222 27
Q ss_pred cCCcccEEEecccc
Q 012319 337 ELHTLSFFVLDEAD 350 (466)
Q Consensus 337 ~l~~l~~lViDEad 350 (466)
++..+.+||+=+.+
T Consensus 409 nl~~~~~vi~~d~~ 422 (500)
T 1z63_A 409 NLTSANRVIHFDRW 422 (500)
T ss_dssp CCTTCSEEEESSCC
T ss_pred chhhCCEEEEeCCC
Confidence 78888888875554
No 496
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.25 E-value=22 Score=33.97 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=0.0
Q ss_pred EEEecCCCCchhHHH
Q 012319 215 IIGAAETGSGKTLAF 229 (466)
Q Consensus 215 vl~~a~TGSGKTl~~ 229 (466)
.++.|+||+|||...
T Consensus 27 ~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 27 TAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEECCTTTCSTHHH
T ss_pred EEEECCCCCcHHHHH
No 497
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=29.00 E-value=30 Score=33.02 Aligned_cols=16 Identities=25% Similarity=0.071 Sum_probs=13.2
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+.+.||+|||||...
T Consensus 92 ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCchHHHHH
Confidence 5678899999999654
No 498
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=28.99 E-value=30 Score=33.33 Aligned_cols=16 Identities=38% Similarity=0.355 Sum_probs=13.7
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+.+.+|+|+|||...
T Consensus 131 vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6788999999999654
No 499
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=28.84 E-value=64 Score=36.21 Aligned_cols=76 Identities=8% Similarity=0.090 Sum_probs=49.2
Q ss_pred eEEEEEeCcHHHHHHHHHHHHHHHcC-----------------------------------CCcEEEEEECCCCHHHHHH
Q 012319 264 LRALIITPTRELALQVTDHLKEVAKG-----------------------------------INVRVVPIVGGMSTEKQER 308 (466)
Q Consensus 264 ~~vLil~PtreLa~Qv~~~l~~l~~~-----------------------------------~~~~v~~~~gg~~~~~~~~ 308 (466)
.++||.+++|.-|..++..|..+.-. ....+..++||+....+..
T Consensus 344 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ 423 (1010)
T 2xgj_A 344 NPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEV 423 (1010)
T ss_dssp CSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHH
Confidence 36999999999998888776542100 0123788899998765543
Q ss_pred HH----hcCCcEEEeCcHHHHHHHhCCCCccccCCcccEEEeccc
Q 012319 309 LL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 349 (466)
Q Consensus 309 ~l----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~l~~lViDEa 349 (466)
.. .+...|||||. .+..| +++..+.+ ||+-.
T Consensus 424 ve~~F~~G~ikVLVAT~-----~la~G----IDiP~~~v-VI~~~ 458 (1010)
T 2xgj_A 424 IEILFQEGFLKVLFATE-----TFSIG----LNMPAKTV-VFTSV 458 (1010)
T ss_dssp HHHHHHTTCCSEEEEEG-----GGGGS----TTCCBSEE-EESCS
T ss_pred HHHHHhcCCCcEEEEeh-----Hhhcc----CCCCCceE-EEeCC
Confidence 33 25688999995 23333 66777665 55433
No 500
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=28.74 E-value=15 Score=32.14 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=13.3
Q ss_pred cEEEecCCCCchhHHH
Q 012319 214 DIIGAAETGSGKTLAF 229 (466)
Q Consensus 214 dvl~~a~TGSGKTl~~ 229 (466)
-+++.|+.|||||...
T Consensus 2 ~I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4788999999999654
Done!