Query 012322
Match_columns 466
No_of_seqs 390 out of 3396
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 01:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 1.1E-99 2E-104 733.4 43.7 458 3-466 49-507 (674)
2 KOG0923 mRNA splicing factor A 100.0 1.8E-98 4E-103 717.0 38.8 461 2-466 262-724 (902)
3 KOG0924 mRNA splicing factor A 100.0 6.4E-95 1.4E-99 693.9 38.6 461 3-466 354-814 (1042)
4 COG1643 HrpA HrpA-like helicas 100.0 3.6E-90 7.7E-95 706.5 47.2 454 2-465 47-506 (845)
5 KOG0925 mRNA splicing factor A 100.0 5.2E-90 1.1E-94 638.5 34.9 454 3-465 45-503 (699)
6 PRK11131 ATP-dependent RNA hel 100.0 4.8E-85 1E-89 691.1 45.9 450 2-465 71-531 (1294)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.5E-84 5.4E-89 688.3 46.3 450 2-465 64-522 (1283)
8 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.2E-84 9.1E-89 672.9 46.3 448 4-462 1-448 (819)
9 PRK11664 ATP-dependent RNA hel 100.0 6.8E-82 1.5E-86 658.1 48.3 448 1-459 1-450 (812)
10 KOG0926 DEAH-box RNA helicase 100.0 4.6E-82 9.9E-87 614.7 37.0 458 3-463 254-818 (1172)
11 KOG0920 ATP-dependent RNA heli 100.0 2.1E-81 4.5E-86 638.5 31.5 461 2-466 170-663 (924)
12 PHA02653 RNA helicase NPH-II; 100.0 9E-57 2E-61 457.8 34.7 396 8-443 167-597 (675)
13 PRK02362 ski2-like helicase; P 100.0 3.8E-45 8.2E-50 386.0 34.4 419 6-442 24-515 (737)
14 PRK01172 ski2-like helicase; P 100.0 9.4E-46 2E-50 388.1 29.1 422 4-443 21-494 (674)
15 KOG0331 ATP-dependent RNA heli 100.0 2.3E-44 5E-49 347.8 24.6 313 8-351 116-452 (519)
16 KOG0921 Dosage compensation co 100.0 3.9E-45 8.4E-50 360.5 14.6 454 3-463 376-889 (1282)
17 PRK00254 ski2-like helicase; P 100.0 7.9E-43 1.7E-47 367.5 31.4 430 6-453 24-521 (720)
18 KOG0330 ATP-dependent RNA heli 100.0 5.7E-44 1.2E-48 324.1 18.1 310 8-351 86-411 (476)
19 PRK11776 ATP-dependent RNA hel 100.0 6.3E-43 1.4E-47 351.9 27.5 310 6-350 27-352 (460)
20 PTZ00110 helicase; Provisional 100.0 5.4E-42 1.2E-46 348.6 28.3 313 6-350 153-487 (545)
21 PRK10590 ATP-dependent RNA hel 100.0 4.2E-42 9.2E-47 344.4 27.1 310 6-350 24-355 (456)
22 PRK04837 ATP-dependent RNA hel 100.0 7.4E-42 1.6E-46 340.5 26.1 310 7-350 32-365 (423)
23 COG0513 SrmB Superfamily II DN 100.0 6.9E-42 1.5E-46 344.5 25.3 309 6-347 52-380 (513)
24 PLN00206 DEAD-box ATP-dependen 100.0 8.7E-42 1.9E-46 346.2 25.8 311 7-351 145-479 (518)
25 PRK11634 ATP-dependent RNA hel 100.0 1.8E-41 4E-46 347.6 28.2 310 6-349 29-354 (629)
26 PRK11192 ATP-dependent RNA hel 100.0 1E-41 2.3E-46 341.0 25.2 313 6-351 24-356 (434)
27 PRK04537 ATP-dependent RNA hel 100.0 3.2E-41 6.9E-46 344.1 27.8 309 6-349 32-366 (572)
28 PRK01297 ATP-dependent RNA hel 100.0 4.3E-41 9.3E-46 339.4 26.9 310 6-349 110-444 (475)
29 PTZ00424 helicase 45; Provisio 100.0 3.8E-41 8.2E-46 334.5 25.7 313 6-351 51-378 (401)
30 PLN03137 ATP-dependent DNA hel 100.0 3.9E-41 8.4E-46 349.8 25.0 306 6-350 461-790 (1195)
31 TIGR03817 DECH_helic helicase/ 100.0 1.4E-40 3E-45 347.6 27.6 320 5-347 36-386 (742)
32 TIGR00614 recQ_fam ATP-depende 100.0 1.2E-40 2.7E-45 334.8 24.0 304 7-351 13-337 (470)
33 COG1202 Superfamily II helicas 100.0 1.7E-40 3.7E-45 314.9 21.8 419 13-464 225-688 (830)
34 COG1204 Superfamily II helicas 100.0 4.2E-40 9.1E-45 340.2 25.4 420 8-442 35-527 (766)
35 KOG0328 Predicted ATP-dependen 100.0 1.8E-40 3.9E-45 289.1 17.7 312 7-351 51-377 (400)
36 KOG0333 U5 snRNP-like RNA heli 100.0 2.2E-40 4.9E-45 311.0 19.1 311 8-349 270-626 (673)
37 PRK11057 ATP-dependent DNA hel 100.0 1.9E-39 4.2E-44 334.4 25.4 303 6-349 26-345 (607)
38 COG0514 RecQ Superfamily II DN 100.0 1.6E-39 3.5E-44 320.1 22.2 303 8-350 20-340 (590)
39 KOG0342 ATP-dependent RNA heli 100.0 2.9E-39 6.4E-44 302.0 22.3 311 6-350 105-440 (543)
40 KOG0338 ATP-dependent RNA heli 100.0 7.2E-40 1.6E-44 306.5 17.0 310 8-350 206-536 (691)
41 TIGR01389 recQ ATP-dependent D 100.0 7.5E-39 1.6E-43 331.1 24.2 302 6-350 14-334 (591)
42 KOG0345 ATP-dependent RNA heli 100.0 5.5E-39 1.2E-43 298.3 20.3 326 7-364 30-383 (567)
43 KOG0340 ATP-dependent RNA heli 100.0 7E-39 1.5E-43 287.8 17.6 313 8-351 32-365 (442)
44 PRK13767 ATP-dependent helicas 100.0 1.7E-37 3.6E-42 330.8 25.9 313 6-343 33-396 (876)
45 KOG0326 ATP-dependent RNA heli 100.0 9.7E-39 2.1E-43 282.8 12.8 311 7-351 109-433 (459)
46 KOG0343 RNA Helicase [RNA proc 100.0 1E-37 2.2E-42 294.6 18.7 312 6-349 92-424 (758)
47 COG1201 Lhr Lhr-like helicases 100.0 2.2E-36 4.8E-41 308.5 27.0 299 7-335 24-348 (814)
48 KOG0332 ATP-dependent RNA heli 100.0 1.9E-36 4E-41 273.8 18.3 318 8-349 115-445 (477)
49 KOG0335 ATP-dependent RNA heli 100.0 1E-36 2.2E-41 289.8 16.1 306 8-347 99-444 (482)
50 PRK09751 putative ATP-dependen 100.0 4.6E-36 9.9E-41 324.5 23.3 296 25-341 1-379 (1490)
51 KOG0952 DNA/RNA helicase MER3/ 100.0 1E-35 2.3E-40 299.6 21.9 438 7-455 112-638 (1230)
52 KOG0348 ATP-dependent RNA heli 100.0 8.8E-36 1.9E-40 280.7 20.0 344 7-371 161-579 (708)
53 KOG0336 ATP-dependent RNA heli 100.0 1.7E-36 3.8E-41 276.8 14.2 310 9-351 246-576 (629)
54 KOG0339 ATP-dependent RNA heli 100.0 1.5E-35 3.3E-40 277.3 16.9 312 7-351 247-579 (731)
55 COG1111 MPH1 ERCC4-like helica 100.0 2.2E-34 4.8E-39 271.5 23.5 323 4-349 14-483 (542)
56 TIGR00580 mfd transcription-re 100.0 1.4E-34 3E-39 305.3 24.5 298 6-347 452-770 (926)
57 KOG0341 DEAD-box protein abstr 100.0 6.8E-36 1.5E-40 271.1 10.4 304 14-351 201-532 (610)
58 PRK10917 ATP-dependent DNA hel 100.0 4.4E-34 9.6E-39 297.7 25.1 298 5-345 261-587 (681)
59 PRK10689 transcription-repair 100.0 3.4E-34 7.4E-39 308.6 22.8 298 6-346 601-918 (1147)
60 TIGR01587 cas3_core CRISPR-ass 100.0 1.6E-33 3.5E-38 275.3 22.8 291 22-348 1-337 (358)
61 TIGR00643 recG ATP-dependent D 100.0 3.5E-33 7.7E-38 289.2 24.8 300 6-345 236-564 (630)
62 KOG0350 DEAD-box ATP-dependent 100.0 2.4E-33 5.1E-38 262.5 20.4 315 7-351 161-544 (620)
63 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.7E-33 8E-38 286.5 22.7 294 5-336 15-378 (844)
64 KOG0346 RNA helicase [RNA proc 100.0 1.8E-33 3.9E-38 259.4 16.7 308 9-349 45-412 (569)
65 KOG0347 RNA helicase [RNA proc 100.0 1.7E-34 3.6E-39 272.9 9.4 309 9-351 207-574 (731)
66 KOG0352 ATP-dependent DNA heli 100.0 2.2E-33 4.8E-38 257.9 15.6 306 9-351 24-366 (641)
67 KOG0354 DEAD-box like helicase 100.0 1.6E-32 3.4E-37 273.7 23.0 322 3-347 60-529 (746)
68 KOG0351 ATP-dependent DNA heli 100.0 1.8E-33 3.9E-38 292.9 15.8 306 7-351 266-596 (941)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 2.6E-31 5.7E-36 257.1 26.5 285 9-333 1-357 (357)
70 KOG4284 DEAD box protein [Tran 100.0 1.5E-32 3.2E-37 263.9 16.6 313 8-349 50-381 (980)
71 KOG0344 ATP-dependent RNA heli 100.0 2.3E-32 5E-37 261.8 17.6 307 10-351 163-499 (593)
72 PHA02558 uvsW UvsW helicase; P 100.0 4.6E-31 1E-35 266.8 24.1 296 4-339 113-443 (501)
73 COG1205 Distinct helicase fami 100.0 4.5E-31 9.7E-36 277.1 22.5 327 5-351 70-426 (851)
74 KOG0327 Translation initiation 100.0 7.7E-31 1.7E-35 239.4 15.6 308 8-351 51-374 (397)
75 PRK09401 reverse gyrase; Revie 100.0 2.7E-30 5.9E-35 279.2 20.7 292 5-333 80-429 (1176)
76 KOG0951 RNA helicase BRR2, DEA 100.0 1E-29 2.2E-34 259.7 23.1 427 9-444 313-834 (1674)
77 PRK13766 Hef nuclease; Provisi 100.0 1.5E-29 3.2E-34 270.7 25.7 316 3-349 13-481 (773)
78 KOG0334 RNA helicase [RNA proc 100.0 1.1E-30 2.4E-35 265.6 14.0 312 5-348 387-721 (997)
79 PRK14701 reverse gyrase; Provi 100.0 2.5E-29 5.4E-34 277.1 16.7 312 5-346 79-455 (1638)
80 KOG0353 ATP-dependent DNA heli 100.0 4.2E-28 9E-33 220.2 20.7 305 7-349 96-469 (695)
81 KOG0947 Cytoplasmic exosomal R 100.0 8.2E-29 1.8E-33 247.4 16.9 325 4-347 296-723 (1248)
82 COG4581 Superfamily II RNA hel 100.0 1.4E-28 3E-33 254.9 19.1 329 4-347 118-537 (1041)
83 PRK09694 helicase Cas3; Provis 100.0 2.9E-27 6.3E-32 247.5 26.5 297 6-335 287-662 (878)
84 KOG0337 ATP-dependent RNA heli 100.0 5.8E-29 1.3E-33 228.6 11.9 307 9-349 47-370 (529)
85 TIGR01054 rgy reverse gyrase. 100.0 1E-27 2.2E-32 259.6 22.9 275 5-305 78-412 (1171)
86 TIGR00603 rad25 DNA repair hel 100.0 4.5E-27 9.8E-32 239.4 25.5 303 4-351 254-611 (732)
87 COG4098 comFA Superfamily II D 100.0 4.8E-27 1E-31 211.1 22.3 290 11-341 107-410 (441)
88 KOG0948 Nuclear exosomal RNA h 100.0 8.2E-29 1.8E-33 241.8 10.3 327 4-349 128-541 (1041)
89 PRK05580 primosome assembly pr 99.9 1.7E-26 3.6E-31 240.1 22.5 312 4-343 143-545 (679)
90 TIGR03714 secA2 accessory Sec 99.9 8.5E-26 1.8E-30 230.2 26.0 108 211-349 422-539 (762)
91 PRK09200 preprotein translocas 99.9 5.1E-26 1.1E-30 234.0 22.9 108 212-349 427-543 (790)
92 PRK12898 secA preprotein trans 99.9 7.6E-26 1.7E-30 227.9 22.8 106 213-348 473-587 (656)
93 TIGR00595 priA primosomal prot 99.9 2.6E-26 5.5E-31 230.4 18.3 293 24-343 1-377 (505)
94 COG1200 RecG RecG-like helicas 99.9 1.1E-25 2.4E-30 221.8 20.8 301 6-348 263-592 (677)
95 COG1061 SSL2 DNA or RNA helica 99.9 4.4E-25 9.5E-30 219.0 23.8 288 4-335 35-376 (442)
96 COG1197 Mfd Transcription-repa 99.9 4.5E-25 9.8E-30 229.1 23.7 293 12-348 605-914 (1139)
97 KOG0950 DNA polymerase theta/e 99.9 2.5E-25 5.3E-30 224.2 20.2 326 5-349 223-613 (1008)
98 TIGR00963 secA preprotein tran 99.9 1.2E-24 2.6E-29 220.4 21.4 109 211-349 403-519 (745)
99 PRK11448 hsdR type I restricti 99.9 4.9E-24 1.1E-28 229.5 27.1 307 4-337 412-802 (1123)
100 COG1203 CRISPR-associated heli 99.9 5.5E-23 1.2E-27 215.8 20.3 311 5-347 195-550 (733)
101 PRK04914 ATP-dependent helicas 99.9 5.9E-22 1.3E-26 209.0 27.7 313 4-348 151-606 (956)
102 KOG0329 ATP-dependent RNA heli 99.9 5.6E-23 1.2E-27 177.5 12.6 277 5-351 65-359 (387)
103 KOG0949 Predicted helicase, DE 99.9 2.2E-21 4.8E-26 195.0 16.9 162 4-170 510-682 (1330)
104 PRK12906 secA preprotein trans 99.9 2.5E-20 5.3E-25 190.9 21.0 109 211-349 438-555 (796)
105 PRK13104 secA preprotein trans 99.8 1.4E-19 3E-24 186.4 20.6 123 212-348 443-588 (896)
106 KOG0349 Putative DEAD-box RNA 99.8 2.4E-20 5.3E-25 172.5 13.3 271 48-344 285-612 (725)
107 PRK12904 preprotein translocas 99.8 3.5E-19 7.6E-24 183.3 20.0 126 211-348 428-574 (830)
108 TIGR00631 uvrb excinuclease AB 99.8 1.3E-18 2.8E-23 179.1 22.9 115 211-348 440-554 (655)
109 COG1198 PriA Primosomal protei 99.8 1E-17 2.2E-22 171.0 20.3 312 4-343 197-599 (730)
110 COG4096 HsdR Type I site-speci 99.8 1.4E-17 3.1E-22 167.0 20.3 294 6-336 166-526 (875)
111 KOG0953 Mitochondrial RNA heli 99.8 5.9E-18 1.3E-22 161.6 14.9 278 20-347 191-477 (700)
112 TIGR00348 hsdR type I site-spe 99.8 1.9E-17 4.1E-22 172.5 19.8 287 21-338 264-638 (667)
113 PRK13107 preprotein translocas 99.8 2.3E-17 5.1E-22 169.6 19.6 135 200-349 438-593 (908)
114 COG1110 Reverse gyrase [DNA re 99.8 6.9E-17 1.5E-21 164.6 20.8 271 5-304 82-419 (1187)
115 PF00270 DEAD: DEAD/DEAH box h 99.7 1.6E-17 3.4E-22 144.5 11.8 156 8-166 2-167 (169)
116 COG0556 UvrB Helicase subunit 99.7 7.2E-16 1.6E-20 147.2 22.7 168 150-345 386-555 (663)
117 cd00268 DEADc DEAD-box helicas 99.7 9.7E-17 2.1E-21 144.0 15.5 156 6-163 22-187 (203)
118 KOG4150 Predicted ATP-dependen 99.7 4E-17 8.8E-22 156.1 11.8 319 6-346 287-639 (1034)
119 PRK05298 excinuclease ABC subu 99.7 2.5E-16 5.3E-21 163.6 13.8 112 212-346 445-556 (652)
120 PRK12899 secA preprotein trans 99.7 6E-15 1.3E-19 152.3 23.2 121 6-128 93-226 (970)
121 TIGR01407 dinG_rel DnaQ family 99.7 3.9E-14 8.5E-19 152.4 27.3 138 195-343 657-811 (850)
122 cd00079 HELICc Helicase superf 99.6 1.5E-15 3.3E-20 125.9 9.4 103 212-342 27-130 (131)
123 PLN03142 Probable chromatin-re 99.6 5.6E-14 1.2E-18 149.6 23.1 112 212-351 486-603 (1033)
124 PF04408 HA2: Helicase associa 99.6 1.8E-15 3.8E-20 118.7 7.2 67 399-465 1-67 (102)
125 PF00271 Helicase_C: Helicase 99.6 4.9E-16 1.1E-20 116.3 3.8 71 247-335 7-77 (78)
126 TIGR02562 cas3_yersinia CRISPR 99.6 6.8E-13 1.5E-17 138.3 25.3 97 216-337 759-881 (1110)
127 KOG1123 RNA polymerase II tran 99.6 2.3E-14 5.1E-19 135.6 12.7 301 5-349 302-655 (776)
128 KOG0951 RNA helicase BRR2, DEA 99.6 1.3E-13 2.9E-18 142.9 18.9 319 18-359 1157-1508(1674)
129 PRK07246 bifunctional ATP-depe 99.5 3E-12 6.5E-17 136.1 27.7 134 195-344 631-781 (820)
130 PRK12900 secA preprotein trans 99.5 6.4E-14 1.4E-18 145.2 12.1 166 152-349 535-713 (1025)
131 smart00487 DEXDc DEAD-like hel 99.5 4.2E-13 9.2E-18 119.5 15.4 157 4-162 7-172 (201)
132 PRK12326 preprotein translocas 99.5 1.6E-12 3.6E-17 131.2 20.7 107 212-348 426-548 (764)
133 cd00046 DEXDc DEAD-like helica 99.5 4.2E-13 9.1E-18 112.5 13.4 136 21-160 1-144 (144)
134 PF07652 Flavi_DEAD: Flaviviru 99.5 2.2E-13 4.7E-18 110.2 10.1 134 18-163 2-139 (148)
135 smart00847 HA2 Helicase associ 99.5 1.3E-13 2.8E-18 106.5 7.2 65 400-464 2-67 (92)
136 PF04851 ResIII: Type III rest 99.4 1E-12 2.2E-17 115.8 12.7 147 4-161 2-183 (184)
137 smart00490 HELICc helicase sup 99.4 1.1E-13 2.4E-18 104.4 5.0 71 247-335 11-81 (82)
138 KOG0921 Dosage compensation co 99.4 9.6E-15 2.1E-19 146.5 -4.3 421 4-440 405-874 (1282)
139 PRK08074 bifunctional ATP-depe 99.4 3.4E-10 7.3E-15 122.7 28.7 139 195-343 735-890 (928)
140 PRK12903 secA preprotein trans 99.4 5.8E-11 1.3E-15 121.9 21.2 106 212-347 425-539 (925)
141 PRK13103 secA preprotein trans 99.4 1.4E-11 3E-16 127.6 16.8 105 23-128 98-213 (913)
142 PF02399 Herpes_ori_bp: Origin 99.3 5.8E-10 1.3E-14 113.9 23.4 294 18-347 47-388 (824)
143 PRK14873 primosome assembly pr 99.3 6.5E-11 1.4E-15 122.2 16.5 135 24-167 164-310 (665)
144 CHL00122 secA preprotein trans 99.3 1.2E-10 2.5E-15 120.4 17.7 113 13-128 82-207 (870)
145 TIGR03117 cas_csf4 CRISPR-asso 99.2 2.9E-08 6.4E-13 101.5 30.0 137 196-346 454-616 (636)
146 PRK12902 secA preprotein trans 99.2 3.2E-09 6.9E-14 109.8 21.1 115 13-128 91-216 (939)
147 COG4889 Predicted helicase [Ge 99.1 1.2E-10 2.6E-15 117.5 8.7 313 6-340 162-577 (1518)
148 COG1121 ZnuC ABC-type Mn/Zn tr 99.1 9.7E-11 2.1E-15 105.1 5.4 150 17-170 27-207 (254)
149 TIGR00604 rad3 DNA repair heli 99.1 1.4E-08 3E-13 107.7 21.0 138 194-339 504-665 (705)
150 COG1120 FepC ABC-type cobalami 99.1 1.1E-09 2.4E-14 98.9 10.5 145 16-161 24-200 (258)
151 COG1126 GlnQ ABC-type polar am 99.1 1.1E-09 2.4E-14 94.3 9.7 145 16-161 24-197 (240)
152 KOG0385 Chromatin remodeling c 99.0 1.9E-08 4.1E-13 100.8 19.7 116 211-351 485-603 (971)
153 KOG0387 Transcription-coupled 98.9 1.8E-07 3.9E-12 94.4 22.1 126 201-351 535-662 (923)
154 KOG1000 Chromatin remodeling p 98.9 4.7E-07 1E-11 86.7 23.3 274 9-302 202-573 (689)
155 COG4555 NatA ABC-type Na+ tran 98.9 3.6E-09 7.7E-14 90.0 7.0 144 17-161 25-194 (245)
156 cd03229 ABC_Class3 This class 98.9 3.3E-09 7.1E-14 92.8 6.8 134 17-160 23-161 (178)
157 cd03216 ABC_Carb_Monos_I This 98.9 1.4E-08 3.1E-13 87.2 10.6 121 17-161 23-143 (163)
158 cd03222 ABC_RNaseL_inhibitor T 98.9 1.6E-08 3.5E-13 87.5 10.6 111 16-160 21-132 (177)
159 KOG0390 DNA repair protein, SN 98.9 8.4E-07 1.8E-11 91.4 23.6 107 218-351 599-711 (776)
160 cd03230 ABC_DR_subfamily_A Thi 98.8 5.8E-09 1.3E-13 90.7 6.8 130 17-160 23-155 (173)
161 COG1136 SalX ABC-type antimicr 98.8 1.2E-08 2.5E-13 90.4 8.4 150 16-169 27-209 (226)
162 cd03246 ABCC_Protease_Secretio 98.8 1.2E-08 2.6E-13 88.8 8.4 134 16-161 24-157 (173)
163 KOG0384 Chromodomain-helicase 98.8 1.2E-07 2.6E-12 99.7 16.8 118 210-352 696-816 (1373)
164 COG1127 Ttg2A ABC-type transpo 98.8 1E-08 2.2E-13 89.8 7.6 143 16-161 30-207 (263)
165 cd03214 ABC_Iron-Siderophores_ 98.8 1.5E-08 3.2E-13 88.8 8.7 130 17-161 22-159 (180)
166 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 3.1E-08 6.8E-13 83.2 9.9 105 17-160 23-127 (144)
167 cd03228 ABCC_MRP_Like The MRP 98.8 2.5E-08 5.4E-13 86.6 9.2 132 17-161 25-156 (171)
168 cd03247 ABCC_cytochrome_bd The 98.8 3.9E-08 8.5E-13 86.0 10.3 135 16-161 24-158 (178)
169 COG1131 CcmA ABC-type multidru 98.8 2.1E-08 4.5E-13 94.5 8.6 141 17-160 28-197 (293)
170 COG2884 FtsE Predicted ATPase 98.8 4.5E-08 9.8E-13 82.6 9.1 150 16-168 24-203 (223)
171 cd03233 ABC_PDR_domain1 The pl 98.8 1.4E-08 3E-13 90.7 6.5 152 17-169 30-187 (202)
172 cd03213 ABCG_EPDR ABCG transpo 98.7 1E-08 2.2E-13 91.0 5.2 137 16-161 31-172 (194)
173 cd03215 ABC_Carb_Monos_II This 98.7 1.3E-08 2.9E-13 89.3 5.7 133 17-160 23-164 (182)
174 COG1124 DppF ABC-type dipeptid 98.7 5.8E-08 1.3E-12 85.6 9.0 150 17-175 30-214 (252)
175 TIGR02868 CydC thiol reductant 98.7 2.2E-08 4.7E-13 103.3 7.5 142 16-159 357-528 (529)
176 COG1116 TauB ABC-type nitrate/ 98.7 2.1E-07 4.4E-12 82.8 12.4 140 16-162 25-193 (248)
177 PRK13541 cytochrome c biogenes 98.7 1.3E-08 2.9E-13 90.3 4.9 144 17-161 23-184 (195)
178 cd00267 ABC_ATPase ABC (ATP-bi 98.7 4.9E-08 1.1E-12 83.5 8.2 119 17-160 22-140 (157)
179 COG1119 ModF ABC-type molybden 98.7 8.6E-08 1.9E-12 84.6 9.6 144 16-160 53-233 (257)
180 COG4604 CeuD ABC-type enteroch 98.7 2E-07 4.2E-12 79.3 11.2 150 16-172 23-205 (252)
181 cd03232 ABC_PDR_domain2 The pl 98.7 2.1E-08 4.6E-13 88.8 5.8 136 16-161 29-169 (192)
182 COG1122 CbiO ABC-type cobalt t 98.7 1.6E-08 3.5E-13 91.2 5.1 151 16-169 26-206 (235)
183 PRK13538 cytochrome c biogenes 98.7 4.2E-08 9E-13 87.9 7.6 145 16-161 23-190 (204)
184 COG0610 Type I site-specific r 98.7 7.2E-07 1.6E-11 96.7 18.2 134 21-160 274-413 (962)
185 TIGR01188 drrA daunorubicin re 98.7 2.5E-08 5.5E-13 94.8 6.3 145 16-161 15-185 (302)
186 COG1134 TagH ABC-type polysacc 98.7 3.9E-07 8.4E-12 80.6 13.1 153 17-172 50-217 (249)
187 PRK13540 cytochrome c biogenes 98.7 5.5E-08 1.2E-12 86.8 7.9 144 17-161 24-188 (200)
188 COG1117 PstB ABC-type phosphat 98.7 2.9E-08 6.4E-13 85.3 5.7 161 16-178 29-230 (253)
189 TIGR00960 3a0501s02 Type II (G 98.7 1.4E-07 3E-12 85.3 10.5 143 17-160 26-198 (216)
190 COG4608 AppF ABC-type oligopep 98.7 2.2E-07 4.7E-12 83.8 11.4 147 16-179 35-186 (268)
191 cd03238 ABC_UvrA The excision 98.7 2.2E-07 4.7E-12 80.4 11.1 126 16-161 17-150 (176)
192 COG3840 ThiQ ABC-type thiamine 98.7 3.5E-08 7.6E-13 82.6 5.8 143 16-161 21-191 (231)
193 TIGR01189 ccmA heme ABC export 98.7 7.3E-08 1.6E-12 85.9 8.3 142 17-160 23-187 (198)
194 COG1118 CysA ABC-type sulfate/ 98.7 6E-08 1.3E-12 88.1 7.6 148 12-160 20-198 (345)
195 COG4152 ABC-type uncharacteriz 98.7 3.9E-08 8.5E-13 86.3 6.1 144 16-160 24-190 (300)
196 PRK13537 nodulation ABC transp 98.7 3.7E-08 8E-13 93.7 6.5 144 17-161 30-199 (306)
197 cd03269 ABC_putative_ATPase Th 98.7 2.4E-08 5.1E-13 89.9 4.9 144 16-160 22-188 (210)
198 cd03226 ABC_cobalt_CbiO_domain 98.7 9.6E-08 2.1E-12 85.6 8.7 142 17-160 23-186 (205)
199 KOG0952 DNA/RNA helicase MER3/ 98.7 8.6E-09 1.9E-13 106.5 2.0 243 21-264 944-1228(1230)
200 PRK13539 cytochrome c biogenes 98.6 8.6E-08 1.9E-12 86.0 7.9 145 16-161 24-188 (207)
201 cd03237 ABC_RNaseL_inhibitor_d 98.6 9.2E-08 2E-12 88.0 8.2 143 17-161 22-177 (246)
202 cd03231 ABC_CcmA_heme_exporter 98.6 9.2E-08 2E-12 85.4 8.0 143 17-160 23-185 (201)
203 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.6 1.6E-07 3.4E-12 85.1 9.6 145 16-161 26-202 (218)
204 TIGR02673 FtsE cell division A 98.6 1.2E-07 2.7E-12 85.6 8.8 144 16-160 24-197 (214)
205 cd03223 ABCD_peroxisomal_ALDP 98.6 2E-07 4.3E-12 80.4 9.6 119 16-160 23-148 (166)
206 PRK13536 nodulation factor exp 98.6 3.7E-08 8E-13 94.8 5.4 150 17-169 64-239 (340)
207 COG1135 AbcC ABC-type metal io 98.6 4.9E-08 1.1E-12 88.8 5.7 143 16-161 28-203 (339)
208 TIGR01166 cbiO cobalt transpor 98.6 1.4E-07 3.1E-12 83.4 8.5 144 17-161 15-188 (190)
209 COG3839 MalK ABC-type sugar tr 98.6 1E-08 2.3E-13 96.4 1.2 143 16-159 25-193 (338)
210 KOG0058 Peptide exporter, ABC 98.6 1E-07 2.3E-12 96.2 8.2 143 16-160 490-663 (716)
211 cd03268 ABC_BcrA_bacitracin_re 98.6 9.8E-08 2.1E-12 85.8 7.4 142 17-160 23-186 (208)
212 TIGR03608 L_ocin_972_ABC putat 98.6 4.9E-08 1.1E-12 87.6 5.2 144 17-161 21-195 (206)
213 cd03258 ABC_MetN_methionine_tr 98.6 2.4E-07 5.2E-12 84.8 9.6 151 16-169 27-208 (233)
214 cd03262 ABC_HisP_GlnQ_permease 98.6 6.3E-07 1.4E-11 80.8 12.2 151 16-169 22-202 (213)
215 TIGR03740 galliderm_ABC gallid 98.6 1.4E-07 3.1E-12 85.7 8.0 150 17-169 23-191 (223)
216 TIGR02315 ABC_phnC phosphonate 98.6 8.2E-08 1.8E-12 88.5 6.4 145 16-161 24-207 (243)
217 cd03261 ABC_Org_Solvent_Resist 98.6 5.5E-08 1.2E-12 89.2 5.2 145 16-161 22-198 (235)
218 cd03265 ABC_DrrA DrrA is the A 98.6 7.2E-08 1.6E-12 87.5 5.8 145 16-161 22-193 (220)
219 cd03256 ABC_PhnC_transporter A 98.6 1E-07 2.2E-12 87.8 6.7 145 16-161 23-206 (241)
220 PRK10908 cell division protein 98.6 2.6E-07 5.6E-12 84.0 9.1 145 16-161 24-198 (222)
221 cd03217 ABC_FeS_Assembly ABC-t 98.6 5E-07 1.1E-11 80.5 10.8 141 16-161 22-165 (200)
222 COG3842 PotA ABC-type spermidi 98.6 2.7E-08 5.8E-13 94.2 2.6 143 16-159 27-196 (352)
223 PRK09544 znuC high-affinity zi 98.6 9.6E-08 2.1E-12 88.2 6.3 150 17-169 27-188 (251)
224 TIGR03771 anch_rpt_ABC anchore 98.6 8.8E-07 1.9E-11 80.4 12.5 144 17-161 3-174 (223)
225 cd03266 ABC_NatA_sodium_export 98.6 9.3E-08 2E-12 86.6 6.1 143 17-160 28-196 (218)
226 COG4988 CydD ABC-type transpor 98.6 5.3E-07 1.1E-11 89.2 11.6 143 16-161 343-516 (559)
227 PRK13543 cytochrome c biogenes 98.6 2.7E-07 5.8E-12 83.3 8.9 143 17-160 34-197 (214)
228 cd03225 ABC_cobalt_CbiO_domain 98.6 1.6E-07 3.5E-12 84.6 7.4 143 17-160 24-194 (211)
229 COG1419 FlhF Flagellar GTP-bin 98.6 1.3E-06 2.8E-11 83.4 13.7 129 19-170 202-333 (407)
230 cd03235 ABC_Metallic_Cations A 98.6 5.9E-07 1.3E-11 81.0 11.0 145 16-161 21-193 (213)
231 TIGR01288 nodI ATP-binding ABC 98.6 9.9E-08 2.1E-12 90.8 6.1 150 17-169 27-202 (303)
232 cd03218 ABC_YhbG The ABC trans 98.5 7.4E-08 1.6E-12 88.2 4.9 151 16-169 22-200 (232)
233 cd03292 ABC_FtsE_transporter F 98.5 3.1E-07 6.8E-12 82.9 8.9 143 17-160 24-196 (214)
234 cd03293 ABC_NrtD_SsuB_transpor 98.5 1.5E-07 3.2E-12 85.4 6.8 151 16-169 26-199 (220)
235 cd03224 ABC_TM1139_LivF_branch 98.5 7.8E-08 1.7E-12 87.4 5.0 144 16-160 22-192 (222)
236 KOG0392 SNF2 family DNA-depend 98.5 4.2E-06 9.2E-11 88.3 17.9 117 213-351 1340-1458(1549)
237 PRK11174 cysteine/glutathione 98.5 9.8E-08 2.1E-12 99.8 6.1 142 17-161 373-545 (588)
238 cd03263 ABC_subfamily_A The AB 98.5 1.5E-07 3.3E-12 85.4 6.5 149 17-169 25-199 (220)
239 TIGR03522 GldA_ABC_ATP gliding 98.5 1.4E-07 3E-12 89.8 6.5 143 17-161 25-193 (301)
240 TIGR03864 PQQ_ABC_ATP ABC tran 98.5 1.2E-07 2.5E-12 87.1 5.8 144 17-161 24-194 (236)
241 PRK09493 glnQ glutamine ABC tr 98.5 9.6E-08 2.1E-12 87.9 5.1 144 17-161 24-197 (240)
242 TIGR02211 LolD_lipo_ex lipopro 98.5 4.4E-07 9.6E-12 82.3 9.3 145 16-161 27-203 (221)
243 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.5 3.3E-07 7.2E-12 83.2 8.4 142 17-160 45-202 (224)
244 TIGR02314 ABC_MetN D-methionin 98.5 2.3E-07 5E-12 89.2 7.7 150 17-169 28-208 (343)
245 cd03259 ABC_Carb_Solutes_like 98.5 1E-06 2.2E-11 79.5 11.5 144 16-160 22-191 (213)
246 PF00448 SRP54: SRP54-type pro 98.5 1.3E-06 2.9E-11 77.0 11.9 128 21-165 2-130 (196)
247 cd03251 ABCC_MsbA MsbA is an e 98.5 5.3E-07 1.2E-11 82.6 9.7 143 17-161 25-198 (234)
248 cd03248 ABCC_TAP TAP, the Tran 98.5 4.9E-07 1.1E-11 82.3 9.3 144 16-161 36-210 (226)
249 TIGR01277 thiQ thiamine ABC tr 98.5 3.4E-07 7.3E-12 82.6 8.0 145 16-161 20-190 (213)
250 cd03219 ABC_Mj1267_LivG_branch 98.5 3.2E-07 6.9E-12 84.2 7.9 65 96-161 140-204 (236)
251 PRK13546 teichoic acids export 98.5 4E-07 8.7E-12 84.6 8.6 143 17-160 47-203 (264)
252 PRK10584 putative ABC transpor 98.5 5E-07 1.1E-11 82.4 9.2 144 17-161 33-208 (228)
253 PRK15177 Vi polysaccharide exp 98.5 3.1E-07 6.8E-12 82.6 7.5 143 16-160 9-163 (213)
254 TIGR01186 proV glycine betaine 98.5 2E-07 4.3E-12 90.2 6.6 138 17-161 16-191 (363)
255 cd03254 ABCC_Glucan_exporter_l 98.5 1.9E-07 4.2E-12 85.2 6.1 144 16-161 25-199 (229)
256 COG2274 SunT ABC-type bacterio 98.5 1.9E-07 4.2E-12 97.3 6.7 144 16-161 495-669 (709)
257 PRK13650 cbiO cobalt transport 98.5 3E-07 6.4E-12 86.5 7.4 145 16-161 29-202 (279)
258 COG1125 OpuBA ABC-type proline 98.5 2.4E-07 5.1E-12 82.0 6.2 144 16-162 23-198 (309)
259 PRK11247 ssuB aliphatic sulfon 98.5 1.3E-07 2.8E-12 87.6 4.7 145 16-161 34-195 (257)
260 cd03301 ABC_MalK_N The N-termi 98.5 3.5E-07 7.5E-12 82.6 7.5 143 17-160 23-191 (213)
261 PRK13635 cbiO cobalt transport 98.5 3.8E-07 8.2E-12 85.7 7.9 144 17-161 30-202 (279)
262 cd03296 ABC_CysA_sulfate_impor 98.5 2.3E-07 5E-12 85.3 6.3 145 16-161 24-198 (239)
263 TIGR03410 urea_trans_UrtE urea 98.5 1.7E-07 3.8E-12 85.6 5.5 145 16-161 22-193 (230)
264 PRK11153 metN DL-methionine tr 98.5 3.8E-07 8.3E-12 88.2 8.1 150 17-169 28-208 (343)
265 TIGR01184 ntrCD nitrate transp 98.5 4.4E-07 9.5E-12 82.8 8.1 144 17-161 8-176 (230)
266 cd03295 ABC_OpuCA_Osmoprotecti 98.5 3E-07 6.5E-12 84.7 7.0 144 16-160 23-196 (242)
267 TIGR02857 CydD thiol reductant 98.5 1.6E-07 3.5E-12 96.9 5.7 143 16-160 344-517 (529)
268 PRK11124 artP arginine transpo 98.5 2.2E-07 4.8E-12 85.6 6.0 144 16-160 24-201 (242)
269 PRK13657 cyclic beta-1,2-gluca 98.5 1.8E-07 3.9E-12 97.7 6.1 142 16-160 357-530 (588)
270 PRK13644 cbiO cobalt transport 98.5 2.3E-07 5.1E-12 86.9 6.3 144 17-161 25-197 (274)
271 cd03369 ABCC_NFT1 Domain 2 of 98.5 3.6E-07 7.9E-12 82.0 7.2 144 16-161 30-185 (207)
272 COG4133 CcmA ABC-type transpor 98.5 6.1E-07 1.3E-11 75.9 7.9 139 16-156 24-185 (209)
273 PRK09536 btuD corrinoid ABC tr 98.5 2.2E-07 4.7E-12 91.1 6.1 144 17-161 26-200 (402)
274 PRK11176 lipid transporter ATP 98.5 3.4E-07 7.4E-12 95.7 7.9 144 16-161 365-540 (582)
275 PRK10247 putative ABC transpor 98.5 1.6E-06 3.5E-11 78.9 11.4 144 17-161 30-199 (225)
276 PRK10895 lipopolysaccharide AB 98.5 2.5E-07 5.4E-12 85.2 6.2 143 17-160 26-197 (241)
277 TIGR03375 type_I_sec_LssB type 98.5 1.3E-06 2.7E-11 93.2 12.4 143 16-161 487-661 (694)
278 cd03298 ABC_ThiQ_thiamine_tran 98.5 4.2E-07 9E-12 81.9 7.4 144 16-160 20-189 (211)
279 PRK11614 livF leucine/isoleuci 98.5 1.6E-07 3.4E-12 86.3 4.5 151 16-169 27-204 (237)
280 PRK13643 cbiO cobalt transport 98.5 2.2E-07 4.8E-12 87.7 5.6 150 17-169 29-211 (288)
281 PF13401 AAA_22: AAA domain; P 98.5 2.7E-07 5.9E-12 76.2 5.5 117 18-157 2-123 (131)
282 cd03253 ABCC_ATM1_transporter 98.4 6.4E-07 1.4E-11 82.2 8.5 143 17-161 24-197 (236)
283 cd03294 ABC_Pro_Gly_Bertaine T 98.4 4.2E-07 9E-12 85.0 7.3 144 17-161 47-222 (269)
284 PRK11231 fecE iron-dicitrate t 98.4 3E-07 6.4E-12 85.4 6.3 150 17-169 25-205 (255)
285 PRK11831 putative ABC transpor 98.4 6.6E-07 1.4E-11 83.7 8.6 143 17-160 30-204 (269)
286 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.4 8.7E-07 1.9E-11 81.4 9.2 144 16-161 25-199 (238)
287 PRK11264 putative amino-acid A 98.4 2.3E-07 4.9E-12 86.0 5.3 71 96-169 141-211 (250)
288 PRK11248 tauB taurine transpor 98.4 4.9E-07 1.1E-11 83.8 7.5 150 17-169 24-196 (255)
289 TIGR03411 urea_trans_UrtD urea 98.4 2.2E-07 4.7E-12 85.7 5.2 150 16-169 24-209 (242)
290 PRK13647 cbiO cobalt transport 98.4 3.6E-07 7.7E-12 85.7 6.7 150 17-169 28-205 (274)
291 PRK11308 dppF dipeptide transp 98.4 9.3E-07 2E-11 84.8 9.6 142 17-161 38-216 (327)
292 PRK11650 ugpC glycerol-3-phosp 98.4 1.9E-06 4.2E-11 83.5 11.8 142 16-160 26-195 (356)
293 cd03252 ABCC_Hemolysin The ABC 98.4 5.6E-07 1.2E-11 82.6 7.7 142 17-161 25-198 (237)
294 PRK15112 antimicrobial peptide 98.4 2.1E-06 4.5E-11 80.3 11.7 151 16-169 35-217 (267)
295 COG1132 MdlB ABC-type multidru 98.4 2.6E-07 5.6E-12 96.1 6.0 143 17-161 352-525 (567)
296 cd03260 ABC_PstB_phosphate_tra 98.4 2.5E-07 5.4E-12 84.4 5.2 142 16-160 22-200 (227)
297 COG4987 CydC ABC-type transpor 98.4 4.6E-07 1E-11 88.4 7.2 142 16-161 360-534 (573)
298 cd03250 ABCC_MRP_domain1 Domai 98.4 1.8E-06 4E-11 77.2 10.7 142 16-161 27-189 (204)
299 PRK11144 modC molybdate transp 98.4 1.8E-07 3.9E-12 90.8 4.4 143 17-160 21-189 (352)
300 PRK13631 cbiO cobalt transport 98.4 3.9E-07 8.4E-12 87.1 6.6 65 96-161 173-237 (320)
301 PRK11629 lolD lipoprotein tran 98.4 7.6E-07 1.6E-11 81.5 8.3 145 16-161 31-207 (233)
302 PRK13634 cbiO cobalt transport 98.4 3.2E-07 6.9E-12 86.7 6.0 150 17-169 30-213 (290)
303 PRK13638 cbiO cobalt transport 98.4 6.5E-07 1.4E-11 83.9 8.0 144 17-161 24-197 (271)
304 PRK15056 manganese/iron transp 98.4 2.6E-06 5.7E-11 79.8 12.1 151 16-169 29-209 (272)
305 PRK14722 flhF flagellar biosyn 98.4 2.7E-06 5.8E-11 81.9 12.2 127 17-166 134-263 (374)
306 cd03267 ABC_NatA_like Similar 98.4 3.2E-07 6.9E-12 84.1 5.8 144 16-160 43-214 (236)
307 PRK15079 oligopeptide ABC tran 98.4 4.6E-07 1E-11 86.9 7.0 144 17-161 44-223 (331)
308 PRK12723 flagellar biosynthesi 98.4 5.5E-06 1.2E-10 80.5 14.3 128 20-170 174-307 (388)
309 COG0410 LivF ABC-type branched 98.4 4.7E-07 1E-11 79.3 6.3 141 16-157 25-194 (237)
310 PRK10771 thiQ thiamine transpo 98.4 3.2E-07 7E-12 83.9 5.6 151 16-169 21-197 (232)
311 cd03244 ABCC_MRP_domain2 Domai 98.4 1.8E-06 3.9E-11 78.4 10.4 142 16-161 26-199 (221)
312 COG4525 TauB ABC-type taurine 98.4 5.2E-06 1.1E-10 70.6 12.2 139 15-163 26-196 (259)
313 cd03300 ABC_PotA_N PotA is an 98.4 2.2E-07 4.7E-12 85.0 4.4 150 17-169 23-198 (232)
314 COG4619 ABC-type uncharacteriz 98.4 1.6E-06 3.4E-11 71.9 8.8 144 16-161 25-195 (223)
315 TIGR02324 CP_lyasePhnL phospho 98.4 4.5E-06 9.7E-11 75.9 13.0 144 16-160 30-209 (224)
316 cd03297 ABC_ModC_molybdenum_tr 98.4 2.8E-07 6.1E-12 83.2 5.0 143 17-161 21-193 (214)
317 PRK13648 cbiO cobalt transport 98.4 5.2E-07 1.1E-11 84.4 7.0 144 17-161 32-204 (269)
318 PRK13649 cbiO cobalt transport 98.4 3E-06 6.5E-11 79.8 12.2 151 16-169 29-212 (280)
319 TIGR03265 PhnT2 putative 2-ami 98.4 2.1E-06 4.7E-11 83.1 11.4 144 17-161 27-196 (353)
320 PRK13545 tagH teichoic acids e 98.4 2.2E-06 4.7E-11 85.6 11.6 144 17-161 47-204 (549)
321 cd03257 ABC_NikE_OppD_transpor 98.4 1.1E-06 2.4E-11 80.2 8.9 145 16-161 27-207 (228)
322 PRK14250 phosphate ABC transpo 98.4 8.9E-07 1.9E-11 81.5 8.3 143 17-161 26-193 (241)
323 TIGR02203 MsbA_lipidA lipid A 98.4 4.6E-07 9.9E-12 94.5 7.2 144 16-161 354-529 (571)
324 PRK11300 livG leucine/isoleuci 98.4 5.1E-07 1.1E-11 83.9 6.7 65 96-161 150-215 (255)
325 TIGR00972 3a0107s01c2 phosphat 98.4 2.9E-07 6.2E-12 85.1 5.0 64 96-161 141-204 (247)
326 PRK10070 glycine betaine trans 98.4 7.6E-07 1.7E-11 87.2 8.2 144 17-161 51-226 (400)
327 PRK13637 cbiO cobalt transport 98.4 3.4E-06 7.4E-11 79.6 12.3 150 17-169 30-212 (287)
328 PRK13548 hmuV hemin importer A 98.4 5.8E-07 1.3E-11 83.5 6.9 145 16-161 24-202 (258)
329 PRK11000 maltose/maltodextrin 98.4 2.5E-06 5.4E-11 83.3 11.6 145 16-161 25-195 (369)
330 cd03264 ABC_drug_resistance_li 98.4 5.3E-07 1.2E-11 81.2 6.5 141 17-160 23-189 (211)
331 PRK10790 putative multidrug tr 98.4 1.1E-06 2.5E-11 91.9 9.8 138 16-161 363-536 (592)
332 TIGR02204 MsbA_rel ABC transpo 98.4 4.6E-07 9.9E-12 94.6 6.9 143 17-161 363-536 (576)
333 COG4598 HisP ABC-type histidin 98.4 1.5E-06 3.3E-11 72.7 8.4 143 17-161 29-213 (256)
334 TIGR03005 ectoine_ehuA ectoine 98.4 2.5E-07 5.5E-12 85.7 4.4 64 97-161 144-208 (252)
335 PRK13652 cbiO cobalt transport 98.4 4E-07 8.6E-12 85.6 5.7 150 17-169 27-205 (277)
336 PRK11889 flhF flagellar biosyn 98.4 7.3E-06 1.6E-10 78.4 14.1 123 21-164 242-366 (436)
337 PRK10789 putative multidrug tr 98.4 4.2E-07 9.1E-12 94.4 6.5 144 16-161 337-511 (569)
338 cd03236 ABC_RNaseL_inhibitor_d 98.4 3.4E-06 7.4E-11 78.0 11.7 144 16-160 22-199 (255)
339 PRK13633 cobalt transporter AT 98.4 5.9E-07 1.3E-11 84.5 6.8 144 17-161 33-206 (280)
340 TIGR03415 ABC_choXWV_ATP choli 98.4 5.3E-07 1.2E-11 87.7 6.6 144 17-161 47-226 (382)
341 TIGR00968 3a0106s01 sulfate AB 98.4 2.4E-07 5.3E-12 84.9 4.1 143 17-160 23-191 (237)
342 TIGR02982 heterocyst_DevA ABC 98.4 1.5E-06 3.2E-11 78.8 9.1 144 17-161 28-203 (220)
343 TIGR03873 F420-0_ABC_ATP propo 98.4 5E-07 1.1E-11 84.0 6.1 150 17-169 24-204 (256)
344 TIGR03258 PhnT 2-aminoethylpho 98.4 2.7E-06 5.8E-11 82.6 11.4 144 17-161 28-200 (362)
345 TIGR02142 modC_ABC molybdenum 98.4 2.5E-07 5.4E-12 89.9 4.2 144 17-161 20-193 (354)
346 PRK12901 secA preprotein trans 98.4 4.3E-06 9.2E-11 88.2 13.4 162 152-348 565-742 (1112)
347 cd03245 ABCC_bacteriocin_expor 98.4 4.7E-07 1E-11 82.1 5.8 144 16-161 26-200 (220)
348 PRK13632 cbiO cobalt transport 98.4 6.4E-07 1.4E-11 83.9 6.8 145 16-161 31-204 (271)
349 PRK09452 potA putrescine/sperm 98.4 2.9E-06 6.3E-11 82.7 11.5 143 17-160 37-205 (375)
350 TIGR02770 nickel_nikD nickel i 98.4 1.1E-06 2.4E-11 80.2 8.2 151 16-169 8-193 (230)
351 PRK10575 iron-hydroxamate tran 98.4 5.6E-07 1.2E-11 84.1 6.3 144 17-161 34-209 (265)
352 TIGR00958 3a01208 Conjugate Tr 98.4 4.4E-07 9.6E-12 96.6 6.3 142 16-161 503-675 (711)
353 PRK13640 cbiO cobalt transport 98.4 8.6E-07 1.9E-11 83.5 7.6 145 16-161 29-205 (282)
354 PRK11432 fbpC ferric transport 98.4 3.1E-06 6.7E-11 81.9 11.5 138 16-160 28-197 (351)
355 TIGR01842 type_I_sec_PrtD type 98.4 4.4E-07 9.6E-12 93.9 6.0 145 16-161 340-515 (544)
356 PRK11160 cysteine/glutathione 98.4 1.4E-06 2.9E-11 90.7 9.6 144 16-161 362-535 (574)
357 cd03234 ABCG_White The White s 98.4 1.4E-06 3.1E-11 79.3 8.6 152 16-169 29-211 (226)
358 PRK13651 cobalt transporter AT 98.4 7.6E-07 1.6E-11 84.6 7.0 72 95-169 161-232 (305)
359 PRK13639 cbiO cobalt transport 98.4 1.2E-06 2.6E-11 82.2 8.3 151 16-169 24-204 (275)
360 PRK11701 phnK phosphonate C-P 98.4 4.3E-06 9.3E-11 77.8 11.9 143 17-160 29-212 (258)
361 cd03299 ABC_ModC_like Archeal 98.4 4.1E-06 8.9E-11 76.7 11.6 144 17-161 22-191 (235)
362 PRK10253 iron-enterobactin tra 98.4 6.2E-07 1.3E-11 83.7 6.2 151 16-169 29-211 (265)
363 PRK10619 histidine/lysine/argi 98.4 4.9E-07 1.1E-11 84.1 5.5 71 96-169 149-219 (257)
364 PRK15439 autoinducer 2 ABC tra 98.4 5.1E-07 1.1E-11 92.5 6.1 144 17-161 34-201 (510)
365 PRK13636 cbiO cobalt transport 98.4 1.6E-06 3.4E-11 81.8 9.0 151 16-169 28-209 (283)
366 TIGR01192 chvA glucan exporter 98.4 5.3E-07 1.2E-11 93.9 6.3 143 16-160 357-530 (585)
367 PRK13642 cbiO cobalt transport 98.4 8E-07 1.7E-11 83.5 6.9 145 16-161 29-202 (277)
368 TIGR03796 NHPM_micro_ABC1 NHPM 98.4 5E-07 1.1E-11 96.6 6.2 141 16-161 501-673 (710)
369 PRK13646 cbiO cobalt transport 98.4 5.6E-06 1.2E-10 78.1 12.6 150 17-169 30-213 (286)
370 TIGR03797 NHPM_micro_ABC2 NHPM 98.4 4.5E-07 9.8E-12 96.5 5.7 138 17-160 476-645 (686)
371 PRK09984 phosphonate/organopho 98.3 6.4E-07 1.4E-11 83.6 5.8 66 95-161 148-214 (262)
372 PRK10418 nikD nickel transport 98.3 2.4E-06 5.1E-11 79.3 9.5 65 96-161 137-202 (254)
373 TIGR01193 bacteriocin_ABC ABC- 98.3 7.4E-07 1.6E-11 95.2 6.8 142 17-161 497-670 (708)
374 cd03291 ABCC_CFTR1 The CFTR su 98.3 1E-06 2.2E-11 82.7 6.7 142 17-161 60-220 (282)
375 PRK10938 putative molybdenum t 98.3 2E-06 4.2E-11 87.9 9.4 144 16-160 25-195 (490)
376 TIGR02323 CP_lyasePhnK phospho 98.3 2.7E-06 5.9E-11 78.9 9.5 144 16-160 25-209 (253)
377 PF06862 DUF1253: Protein of u 98.3 0.00026 5.5E-09 69.4 23.3 233 94-351 131-419 (442)
378 PRK11022 dppD dipeptide transp 98.3 4.2E-06 9.2E-11 80.3 11.0 63 98-161 152-215 (326)
379 TIGR01194 cyc_pep_trnsptr cycl 98.3 1.5E-06 3.3E-11 89.9 8.5 144 16-160 364-531 (555)
380 TIGR02769 nickel_nikE nickel i 98.3 2E-06 4.3E-11 80.3 8.5 145 16-161 33-212 (265)
381 PRK13641 cbiO cobalt transport 98.3 2.2E-06 4.8E-11 80.9 8.8 151 16-169 29-212 (287)
382 PRK14247 phosphate ABC transpo 98.3 9.5E-07 2E-11 81.8 6.1 65 95-161 142-206 (250)
383 COG1123 ATPase components of v 98.3 3.8E-06 8.2E-11 83.6 10.6 159 16-179 313-506 (539)
384 COG4181 Predicted ABC-type tra 98.3 4.4E-06 9.6E-11 69.5 9.1 141 16-160 32-207 (228)
385 TIGR01978 sufC FeS assembly AT 98.3 7.2E-07 1.6E-11 82.3 5.1 60 100-160 145-204 (243)
386 PRK10419 nikE nickel transport 98.3 2E-06 4.3E-11 80.4 8.1 144 16-160 34-212 (268)
387 PRK10762 D-ribose transporter 98.3 6.5E-07 1.4E-11 91.6 5.2 151 16-169 26-208 (501)
388 PRK11607 potG putrescine trans 98.3 5.7E-06 1.2E-10 80.8 11.4 143 17-160 42-210 (377)
389 PRK10851 sulfate/thiosulfate t 98.3 5.8E-07 1.3E-11 87.0 4.4 143 17-160 25-197 (353)
390 PRK10522 multidrug transporter 98.3 4.9E-06 1.1E-10 86.1 11.5 142 17-160 346-510 (547)
391 cd03289 ABCC_CFTR2 The CFTR su 98.3 1.8E-06 4E-11 80.6 7.5 60 100-161 139-198 (275)
392 PRK09473 oppD oligopeptide tra 98.3 5.3E-06 1.2E-10 79.7 10.8 63 98-161 160-223 (330)
393 PRK13547 hmuV hemin importer A 98.3 2.1E-06 4.5E-11 80.3 7.6 66 95-161 141-216 (272)
394 COG4175 ProV ABC-type proline/ 98.3 5.4E-06 1.2E-10 75.8 9.8 180 17-202 51-266 (386)
395 PF13604 AAA_30: AAA domain; P 98.3 3.2E-06 6.9E-11 74.9 8.3 61 7-68 3-65 (196)
396 cd00009 AAA The AAA+ (ATPases 98.3 2.4E-05 5.2E-10 65.5 13.5 37 9-45 6-44 (151)
397 CHL00131 ycf16 sulfate ABC tra 98.3 1.2E-06 2.7E-11 81.2 5.9 61 100-161 152-212 (252)
398 PRK13645 cbiO cobalt transport 98.3 2.8E-06 6E-11 80.4 8.4 150 17-169 34-218 (289)
399 PRK10982 galactose/methyl gala 98.3 7.4E-07 1.6E-11 91.0 4.8 144 17-161 21-195 (491)
400 PRK09700 D-allose transporter 98.3 1.8E-06 3.8E-11 88.7 7.6 143 17-160 28-205 (510)
401 PRK14267 phosphate ABC transpo 98.3 9.6E-07 2.1E-11 81.9 5.1 64 96-161 146-209 (253)
402 PRK13409 putative ATPase RIL; 98.3 2.1E-06 4.6E-11 88.8 8.1 142 17-161 362-515 (590)
403 TIGR01846 type_I_sec_HlyB type 98.3 1.1E-06 2.3E-11 93.7 6.1 142 17-161 480-653 (694)
404 COG3845 ABC-type uncharacteriz 98.3 1.1E-05 2.5E-10 78.2 12.4 145 16-161 26-201 (501)
405 PRK14241 phosphate transporter 98.3 1.1E-05 2.3E-10 75.1 12.0 64 95-160 144-207 (258)
406 PF00176 SNF2_N: SNF2 family N 98.3 5.8E-06 1.3E-10 78.7 10.4 134 18-162 23-174 (299)
407 cd03290 ABCC_SUR1_N The SUR do 98.3 1E-06 2.2E-11 79.8 4.8 65 96-161 137-203 (218)
408 PRK14251 phosphate ABC transpo 98.3 9.5E-06 2.1E-10 75.2 11.4 64 96-161 144-207 (251)
409 COG0444 DppD ABC-type dipeptid 98.2 4.9E-06 1.1E-10 76.9 9.1 61 100-161 154-215 (316)
410 PRK14259 phosphate ABC transpo 98.2 1.6E-06 3.4E-11 81.2 6.0 70 96-169 151-220 (269)
411 COG4618 ArpD ABC-type protease 98.2 1.6E-06 3.4E-11 84.1 6.0 139 16-161 358-533 (580)
412 COG4559 ABC-type hemin transpo 98.2 1.3E-05 2.8E-10 69.2 10.9 159 17-179 24-217 (259)
413 cd03288 ABCC_SUR2 The SUR doma 98.2 3.1E-06 6.6E-11 78.7 7.8 143 17-161 44-216 (257)
414 PRK11288 araG L-arabinose tran 98.2 1.1E-05 2.4E-10 82.6 12.5 151 16-169 275-463 (501)
415 KOG0057 Mitochondrial Fe/S clu 98.2 1.7E-06 3.6E-11 84.7 6.1 137 16-161 374-547 (591)
416 PRK09580 sufC cysteine desulfu 98.2 7.2E-06 1.6E-10 75.8 10.1 62 99-161 145-206 (248)
417 COG3638 ABC-type phosphate/pho 98.2 4.1E-06 9E-11 73.6 7.8 151 16-170 26-216 (258)
418 PLN03232 ABC transporter C fam 98.2 3.1E-06 6.7E-11 96.9 9.1 144 16-161 1258-1431(1495)
419 PRK09700 D-allose transporter 98.2 2E-06 4.3E-11 88.3 6.9 150 17-169 286-476 (510)
420 PRK05703 flhF flagellar biosyn 98.2 2.4E-05 5.2E-10 77.5 14.2 126 19-167 220-349 (424)
421 PRK14269 phosphate ABC transpo 98.2 1.1E-05 2.4E-10 74.5 11.1 64 96-161 139-202 (246)
422 PRK03695 vitamin B12-transport 98.2 2E-06 4.3E-11 79.4 6.1 65 96-161 123-194 (248)
423 PRK10744 pstB phosphate transp 98.2 1.4E-06 3E-11 81.2 5.1 70 96-169 153-222 (260)
424 PRK14273 phosphate ABC transpo 98.2 1.2E-06 2.6E-11 81.3 4.6 65 95-161 146-210 (254)
425 PRK14262 phosphate ABC transpo 98.2 4.1E-06 8.8E-11 77.6 8.1 70 96-169 143-212 (250)
426 COG1101 PhnK ABC-type uncharac 98.2 8.3E-06 1.8E-10 70.6 9.2 154 5-161 13-210 (263)
427 COG4178 ABC-type uncharacteriz 98.2 5.4E-06 1.2E-10 83.6 9.3 138 16-161 415-575 (604)
428 PRK11288 araG L-arabinose tran 98.2 1.1E-06 2.4E-11 89.9 4.7 145 16-161 26-201 (501)
429 PRK14242 phosphate transporter 98.2 1.2E-06 2.5E-11 81.3 4.4 63 97-161 147-209 (253)
430 PRK14275 phosphate ABC transpo 98.2 1.4E-05 3E-10 75.4 11.7 71 95-169 178-248 (286)
431 PRK13409 putative ATPase RIL; 98.2 1.1E-05 2.4E-10 83.6 11.9 142 16-161 95-272 (590)
432 PRK15439 autoinducer 2 ABC tra 98.2 1.1E-05 2.5E-10 82.6 11.9 151 16-169 285-470 (510)
433 PTZ00265 multidrug resistance 98.2 2.3E-06 4.9E-11 97.3 7.3 61 100-161 1359-1420(1466)
434 PRK14268 phosphate ABC transpo 98.2 1.4E-06 3.1E-11 80.9 4.8 64 95-160 150-213 (258)
435 PRK15093 antimicrobial peptide 98.2 1.9E-05 4.1E-10 76.0 12.6 64 97-161 156-220 (330)
436 COG0653 SecA Preprotein transl 98.2 2E-05 4.4E-10 81.8 13.2 112 211-345 427-543 (822)
437 PRK14974 cell division protein 98.2 2.5E-05 5.4E-10 74.5 12.9 124 21-163 141-267 (336)
438 COG0396 sufC Cysteine desulfur 98.2 3.1E-06 6.7E-11 74.0 6.1 53 114-170 159-211 (251)
439 PRK14272 phosphate ABC transpo 98.2 1.7E-06 3.6E-11 80.3 4.9 65 95-161 144-208 (252)
440 COG0488 Uup ATPase components 98.2 4E-06 8.7E-11 84.7 7.9 140 16-159 344-495 (530)
441 PRK14265 phosphate ABC transpo 98.2 1.7E-06 3.8E-11 81.0 5.0 70 96-169 158-227 (274)
442 KOG0055 Multidrug/pheromone ex 98.2 2.2E-06 4.7E-11 92.1 6.1 142 16-161 375-549 (1228)
443 PRK13549 xylose transporter AT 98.2 1.6E-06 3.4E-11 88.9 5.0 65 95-160 139-203 (506)
444 KOG0389 SNF2 family DNA-depend 98.2 1.3E-05 2.9E-10 81.2 11.2 114 213-351 777-892 (941)
445 PLN03130 ABC transporter C fam 98.2 2.1E-06 4.6E-11 98.4 6.4 142 16-161 1261-1434(1622)
446 PRK10762 D-ribose transporter 98.2 1.5E-05 3.2E-10 81.7 11.9 73 94-169 390-462 (501)
447 PRK14260 phosphate ABC transpo 98.2 2E-05 4.4E-10 73.3 11.8 71 95-169 146-216 (259)
448 PRK14238 phosphate transporter 98.2 4.7E-06 1E-10 78.0 7.5 64 96-161 164-227 (271)
449 PRK14270 phosphate ABC transpo 98.2 2.6E-06 5.7E-11 78.9 5.7 70 96-169 144-213 (251)
450 TIGR00957 MRP_assoc_pro multi 98.2 2.7E-06 5.8E-11 97.5 6.9 143 16-161 1308-1481(1522)
451 TIGR02633 xylG D-xylose ABC tr 98.2 1.6E-05 3.4E-10 81.5 11.9 72 95-169 399-470 (500)
452 PRK10536 hypothetical protein; 98.2 5E-06 1.1E-10 75.2 7.2 56 4-59 58-114 (262)
453 PF02562 PhoH: PhoH-like prote 98.2 2E-06 4.3E-11 75.7 4.5 56 5-60 4-60 (205)
454 PRK14257 phosphate ABC transpo 98.2 2.4E-05 5.2E-10 75.1 12.2 64 95-160 221-284 (329)
455 PRK10982 galactose/methyl gala 98.2 1.7E-05 3.6E-10 81.1 11.8 143 17-161 271-452 (491)
456 PRK14235 phosphate transporter 98.2 2.7E-06 5.8E-11 79.5 5.5 63 96-160 160-222 (267)
457 PRK12726 flagellar biosynthesi 98.1 2.3E-05 4.9E-10 74.9 11.5 132 18-169 204-336 (407)
458 PRK14240 phosphate transporter 98.1 2.1E-06 4.5E-11 79.5 4.6 63 96-160 143-205 (250)
459 PRK14248 phosphate ABC transpo 98.1 7E-06 1.5E-10 76.8 7.9 65 95-161 160-224 (268)
460 KOG1002 Nucleotide excision re 98.1 0.00012 2.7E-09 70.6 16.1 90 246-350 661-752 (791)
461 PRK14246 phosphate ABC transpo 98.1 3.7E-05 8E-10 71.4 12.6 63 96-160 150-212 (257)
462 PRK14236 phosphate transporter 98.1 9.4E-06 2E-10 76.1 8.6 64 96-161 165-228 (272)
463 COG4586 ABC-type uncharacteriz 98.1 1.9E-05 4.2E-10 70.8 10.0 148 17-169 47-224 (325)
464 COG1129 MglA ABC-type sugar tr 98.1 5.8E-06 1.3E-10 81.7 7.4 144 16-161 30-206 (500)
465 PTZ00243 ABC transporter; Prov 98.1 3.5E-06 7.5E-11 96.5 6.7 143 16-161 1332-1506(1560)
466 PRK14274 phosphate ABC transpo 98.1 3.8E-06 8.3E-11 78.2 5.8 63 96-160 152-214 (259)
467 PRK10261 glutathione transport 98.1 1.1E-05 2.4E-10 84.6 9.8 145 16-161 346-525 (623)
468 COG1123 ATPase components of v 98.1 3.6E-05 7.9E-10 76.7 12.8 61 100-161 155-216 (539)
469 PRK13549 xylose transporter AT 98.1 2.5E-05 5.3E-10 80.2 12.2 72 95-169 401-472 (506)
470 PRK14237 phosphate transporter 98.1 2.7E-06 5.9E-11 79.5 4.7 70 96-169 160-229 (267)
471 PRK14264 phosphate ABC transpo 98.1 3.5E-05 7.7E-10 73.4 12.3 64 96-161 197-260 (305)
472 PLN03211 ABC transporter G-25; 98.1 1.9E-06 4.1E-11 90.4 3.8 63 98-161 205-267 (659)
473 PRK14271 phosphate ABC transpo 98.1 4.1E-06 8.9E-11 78.6 5.7 70 96-169 160-229 (276)
474 PRK14245 phosphate ABC transpo 98.1 4E-05 8.6E-10 71.0 12.3 70 96-169 143-212 (250)
475 TIGR02633 xylG D-xylose ABC tr 98.1 2.5E-06 5.4E-11 87.4 4.5 64 96-160 138-201 (500)
476 PRK10261 glutathione transport 98.1 7.9E-06 1.7E-10 85.7 8.3 65 96-161 165-230 (623)
477 PRK14249 phosphate ABC transpo 98.1 1.1E-05 2.3E-10 74.8 8.4 65 95-161 143-207 (251)
478 PRK14254 phosphate ABC transpo 98.1 2.6E-06 5.7E-11 80.3 4.3 64 95-160 176-239 (285)
479 PRK14253 phosphate ABC transpo 98.1 4.4E-06 9.5E-11 77.3 5.7 69 97-169 143-211 (249)
480 COG0488 Uup ATPase components 98.1 1.4E-05 3E-10 80.9 9.5 62 94-159 148-209 (530)
481 PRK14243 phosphate transporter 98.1 5.1E-06 1.1E-10 77.5 6.0 70 96-169 148-217 (264)
482 PF13245 AAA_19: Part of AAA d 98.1 1.6E-05 3.4E-10 58.3 7.3 56 14-69 4-62 (76)
483 TIGR00954 3a01203 Peroxysomal 98.1 1.9E-05 4.2E-10 83.2 10.9 134 17-161 475-640 (659)
484 PRK14261 phosphate ABC transpo 98.1 3.4E-06 7.4E-11 78.2 4.8 64 95-160 145-208 (253)
485 COG0411 LivG ABC-type branched 98.1 2.2E-06 4.8E-11 75.7 3.2 145 16-161 26-211 (250)
486 PRK14263 phosphate ABC transpo 98.1 3.5E-06 7.6E-11 78.4 4.8 70 97-170 147-216 (261)
487 TIGR01257 rim_protein retinal- 98.1 7.7E-06 1.7E-10 94.1 8.3 144 17-161 1962-2131(2272)
488 smart00382 AAA ATPases associa 98.1 3.1E-05 6.8E-10 64.3 10.1 37 20-57 2-38 (148)
489 PRK14266 phosphate ABC transpo 98.1 5.1E-06 1.1E-10 76.9 5.7 64 95-160 142-205 (250)
490 PLN03073 ABC transporter F fam 98.1 9.2E-06 2E-10 85.9 8.2 140 17-160 532-684 (718)
491 PLN03232 ABC transporter C fam 98.1 1.3E-05 2.9E-10 91.8 10.1 138 17-161 640-801 (1495)
492 PRK14244 phosphate ABC transpo 98.1 4.9E-06 1.1E-10 77.1 5.4 62 97-160 147-208 (251)
493 PRK14721 flhF flagellar biosyn 98.1 8.4E-05 1.8E-09 72.9 14.1 128 18-168 189-319 (420)
494 TIGR03269 met_CoM_red_A2 methy 98.1 1.2E-05 2.6E-10 82.8 8.6 71 96-169 165-236 (520)
495 TIGR01271 CFTR_protein cystic 98.1 2.6E-05 5.6E-10 89.4 12.0 140 16-161 1241-1413(1490)
496 PRK10636 putative ABC transpor 98.1 8.9E-06 1.9E-10 85.4 7.7 141 16-160 334-487 (638)
497 TIGR01257 rim_protein retinal- 98.1 6.5E-06 1.4E-10 94.8 6.9 143 17-161 953-1121(2272)
498 TIGR03269 met_CoM_red_A2 methy 98.1 3.8E-05 8.2E-10 79.1 12.0 72 95-169 423-495 (520)
499 PRK14256 phosphate ABC transpo 98.0 3.4E-06 7.5E-11 78.2 3.9 69 97-169 146-214 (252)
500 PRK14258 phosphate ABC transpo 98.0 5.3E-05 1.1E-09 70.6 11.8 71 96-169 147-218 (261)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-99 Score=733.43 Aligned_cols=458 Identities=58% Similarity=0.944 Sum_probs=445.2
Q ss_pred CCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeee
Q 012322 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (466)
Q Consensus 3 ~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g 82 (466)
.|||++++++|++.+.++++++|+|+|||||||++|+++.+..+...++|.|++|+|.++..++++++++.+...|..+|
T Consensus 49 ~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 49 SLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred cCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 69999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccCh
Q 012322 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (466)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~ 162 (466)
|.++|++..+.+++|.|+|.|+|++.++.++.+.++++||+||||||++.+|.++++++++++.++ +.++|+||||++.
T Consensus 129 Y~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~-~LklIimSATlda 207 (674)
T KOG0922|consen 129 YTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRP-DLKLIIMSATLDA 207 (674)
T ss_pred eEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCC-CceEEEEeeeecH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred hHHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccC
Q 012322 163 EKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE 242 (466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~ 242 (466)
+.+.+||.+++++.++|+.+|+++.|.+.+..+|+++.+..++++|..+++|.+|||++++++++.+++.|.+.......
T Consensus 208 ~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~ 287 (674)
T KOG0922|consen 208 EKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPE 287 (674)
T ss_pred HHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766654
Q ss_pred CCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecH
Q 012322 243 GSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISK 322 (466)
Q Consensus 243 ~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~ 322 (466)
.. ...+.++||.|+.+++.++++..+.|.+|||+|||++|++++||+|.||||+|+.|++.|||..|+..+...|+|+
T Consensus 288 ~~--~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISk 365 (674)
T KOG0922|consen 288 DC--PELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISK 365 (674)
T ss_pred cC--cceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechH
Confidence 43 2278899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCCeEEEecCccchhhhCCCCCCCccccCCchHHHHHHHhCCCCCCccccccCCCCCCHHHHHHHHH
Q 012322 323 VQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALK 402 (466)
Q Consensus 323 ~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 402 (466)
+++.||+|||||.+||+||+||++++|+. |++.+.|||+|.+|...+|++|++|+++ +..|+|+|||+.+++..|++
T Consensus 366 asA~QRaGRAGRt~pGkcyRLYte~~~~~-~~~~~~PEI~R~~Ls~~vL~Lkalgi~d--~l~F~f~d~P~~~~l~~AL~ 442 (674)
T KOG0922|consen 366 ASANQRAGRAGRTGPGKCYRLYTESAYDK-MPLQTVPEIQRVNLSSAVLQLKALGIND--PLRFPFIDPPPPEALEEALE 442 (674)
T ss_pred HHHhhhcccCCCCCCceEEEeeeHHHHhh-cccCCCCceeeechHHHHHHHHhcCCCC--cccCCCCCCCChHHHHHHHH
Confidence 99999999999999999999999999976 9999999999999999999999999998 99999999999999999999
Q ss_pred HHHHcccccCCCCCCH-HHHHHccCCCCHHHHHHHHHhhhhCCHHHHHHHhhhhcCCCcccCCCC
Q 012322 403 QLYLIDAIDENGSITS-IGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRS 466 (466)
Q Consensus 403 ~L~~~~~l~~~~~~T~-lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~f~~~~~ 466 (466)
.|..+|+||++|.+|. +|+.|+.+|++|.++|+++.+..++|++|+++|+|+||++++|.+|++
T Consensus 443 ~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~ 507 (674)
T KOG0922|consen 443 ELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKD 507 (674)
T ss_pred HHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccc
Confidence 9999999999999999 999999999999999999999999999999999999999999999874
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-98 Score=717.04 Aligned_cols=461 Identities=52% Similarity=0.918 Sum_probs=447.4
Q ss_pred CCCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcE-EEEeCchhHHHHHHHHHHHHHhCCccCCe
Q 012322 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-IGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (466)
Q Consensus 2 ~~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~-i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 80 (466)
+.||||.++++++.++.++++++|+|.|||||||++|+++....++.+++ |.|++|+|.+|..++.++++++|...|..
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e 341 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE 341 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccc
Confidence 36999999999999999999999999999999999999999999987775 99999999999999999999999999999
Q ss_pred eeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
+||.+++++..+.++.|.|+|.|+|++.++..+.+..+++|||||||+|.+.+|.+.++++.+.+.++ +.+++++|||+
T Consensus 342 VGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp-dLKllIsSAT~ 420 (902)
T KOG0923|consen 342 VGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP-DLKLLISSATM 420 (902)
T ss_pred cceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC-cceEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred ChhHHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhc
Q 012322 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~ 240 (466)
+.+.|..||++++++.++|+.|||+++|...+..+|+++.+..++++|...+.|.+|||+.+.++++.+.+.|.+....+
T Consensus 421 DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~L 500 (902)
T KOG0923|consen 421 DAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRL 500 (902)
T ss_pred CHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred cCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeee
Q 012322 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQI 320 (466)
Q Consensus 241 ~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~ 320 (466)
+... ..+-+.++|++||.+.+.+||+..++|.++|++|||+||++++|++|.||||.|+.|++.|+|++||..+...|+
T Consensus 501 Gski-~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~pi 579 (902)
T KOG0923|consen 501 GSKI-RELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPI 579 (902)
T ss_pred cccc-ceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeee
Confidence 6544 467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhccccCCCCCCeEEEecCccchhhhCCCCCCCccccCCchHHHHHHHhCCCCCCccccccCCCCCCHHHHHHH
Q 012322 321 SKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDA 400 (466)
Q Consensus 321 s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~~~~~ 400 (466)
|++++.||+|||||.+||+||+||+...|.+.+.+.+.|||+|.+|..++|.|+++|+.+ +..|+|+|||+.+++..|
T Consensus 580 SKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~D--l~~FdFmDpPp~etL~~a 657 (902)
T KOG0923|consen 580 SKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHD--LIHFDFLDPPPTETLLKA 657 (902)
T ss_pred chhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcch--hcccccCCCCChHHHHHH
Confidence 999999999999999999999999999999989999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHcccccCCCCCCHHHHHHccCCCCHHHHHHHHHhhhhCCHHHHHHHhhhhcCCC-cccCCCC
Q 012322 401 LKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAET-TLLPGRS 466 (466)
Q Consensus 401 l~~L~~~~~l~~~~~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~f~~~~~ 466 (466)
++.|+.+||++..|+||.+|+.|+++|+||+++|||+.+-.+.|.+++++|+||+|+.. +|.+|.+
T Consensus 658 LE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~ 724 (902)
T KOG0923|consen 658 LEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKD 724 (902)
T ss_pred HHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchh
Confidence 99999999999999999999999999999999999999999999999999999999986 8888753
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-95 Score=693.91 Aligned_cols=461 Identities=52% Similarity=0.900 Sum_probs=448.8
Q ss_pred CCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeee
Q 012322 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (466)
Q Consensus 3 ~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g 82 (466)
.||+++.++++++.|.++++++|+|.|||||||++++++++..+...+.+.|++|+|.+|..++++++++++...|..+|
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 69999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccCh
Q 012322 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (466)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~ 162 (466)
|.++|++.....+.|.|+|.|.|++..+.+..+.++++||+||||+|++++|.+.++++.+++.+. +.++|++|||++.
T Consensus 434 YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRr-dlKliVtSATm~a 512 (1042)
T KOG0924|consen 434 YSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR-DLKLIVTSATMDA 512 (1042)
T ss_pred eEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhc-cceEEEeeccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999887 9999999999999
Q ss_pred hHHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccC
Q 012322 163 EKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE 242 (466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~ 242 (466)
+.|.+||++++.+.++|+.|||++.|...+..+|++..+...+.+|...+.|.+|||.+++++++..+..+...+..+..
T Consensus 513 ~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~ 592 (1042)
T KOG0924|consen 513 QKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDS 592 (1042)
T ss_pred HHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877665
Q ss_pred CCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecH
Q 012322 243 GSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISK 322 (466)
Q Consensus 243 ~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~ 322 (466)
....++.|+++++.||.+-+.++|+....|.+++|||||+||+++++|+|.||||+|++|.++|++..|+..+...|+|+
T Consensus 593 ~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~ 672 (1042)
T KOG0924|consen 593 APTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQ 672 (1042)
T ss_pred CCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechh
Confidence 54458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCCeEEEecCccchhhhCCCCCCCccccCCchHHHHHHHhCCCCCCccccccCCCCCCHHHHHHHHH
Q 012322 323 VQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALK 402 (466)
Q Consensus 323 ~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 402 (466)
+++.||+|||||++||.||++|++..|.+.|.+.+.|||+|.++..++|.|+++|+++ +..|+|+|||+.+.+..++-
T Consensus 673 AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~d--ll~FdFmD~Pped~~~~sly 750 (1042)
T KOG0924|consen 673 ANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDD--LLKFDFMDPPPEDNLLNSLY 750 (1042)
T ss_pred ccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhh--hhCCCcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998889999999999999999999999999988 99999999999999999999
Q ss_pred HHHHcccccCCCCCCHHHHHHccCCCCHHHHHHHHHhhhhCCHHHHHHHhhhhcCCCcccCCCC
Q 012322 403 QLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRS 466 (466)
Q Consensus 403 ~L~~~~~l~~~~~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~f~~~~~ 466 (466)
.|..+|||+..|.||++|+.|+++|+||.++||++-+..+||.+|+++|++||||+..|.+|.+
T Consensus 751 ~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpke 814 (1042)
T KOG0924|consen 751 QLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKE 814 (1042)
T ss_pred HHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999864
No 4
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.6e-90 Score=706.52 Aligned_cols=454 Identities=51% Similarity=0.831 Sum_probs=437.3
Q ss_pred CCCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCee
Q 012322 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (466)
Q Consensus 2 ~~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~ 81 (466)
..||+++.+.+|++++.+++.++|+|||||||||++|+++....+..++.|.+++|+|.+|..+++++++.++..+|..|
T Consensus 47 ~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 47 SGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred ccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 46999999999999999999999999999999999999999998877789999999999999999999999999999999
Q ss_pred eeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
||.+++++..+.+++|.++|.|+|++.+..++.+..+++|||||+|||++++|+++++++.++..++.+.|+|+||||++
T Consensus 127 GY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld 206 (845)
T COG1643 127 GYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLD 206 (845)
T ss_pred eEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999988887899999999999
Q ss_pred hhHHHhhcCCCCeEeeCCCcCceeeeecCCCCCch-HHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHH-hhhh
Q 012322 162 GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSY-LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLED-KIRS 239 (466)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~-~~~~ 239 (466)
.+.|.+||++++++.++|+.||+++.|.+....++ +...+...+.++..++.|++|||+|+.++++.+++.|.+ .+.
T Consensus 207 ~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~- 285 (845)
T COG1643 207 AERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG- 285 (845)
T ss_pred HHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcccc-
Confidence 99999999999999999999999999988887888 899999999999999999999999999999999999998 211
Q ss_pred ccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceee
Q 012322 240 LDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQ 319 (466)
Q Consensus 240 ~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~ 319 (466)
....+.++||.|+.+++.++|+....|++|||+|||++|+|++||+|++|||+|+.|.+.||+.+|+..+...|
T Consensus 286 ------~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ 359 (845)
T COG1643 286 ------DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEP 359 (845)
T ss_pred ------CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEE
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecHHHHHHhccccCCCCCCeEEEecCccchhhhCCCCCCCccccCCchHHHHHHHhCCCC-CCccccccCCCCCCHHHHH
Q 012322 320 ISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLS-DINVLKFDFLDPPSSESLE 398 (466)
Q Consensus 320 ~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p~i~~~~l~~~~l~l~~~~~~-~~~~~~~~~~~~p~~~~~~ 398 (466)
+|++++.||+|||||.+||.||+||++++|.. ++.++.|||++++|+.++|+++++|+. + ...|+|+|||+..++.
T Consensus 360 ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~-~~~~t~PEIlrtdLs~~vL~l~~~G~~~d--~~~f~fld~P~~~~i~ 436 (845)
T COG1643 360 ISKASADQRAGRAGRTGPGICYRLYSEEDFLA-FPEFTLPEILRTDLSGLVLQLKSLGIGQD--IAPFPFLDPPPEAAIQ 436 (845)
T ss_pred echhhhhhhccccccCCCceEEEecCHHHHHh-cccCCChhhhhcchHHHHHHHHhcCCCCC--cccCccCCCCChHHHH
Confidence 99999999999999999999999999999995 999999999999999999999999995 7 8999999999999999
Q ss_pred HHHHHHHHcccccCCCCCCHHHHHHccCCCCHHHHHHHHHhhhhCCHHHHHHHhhhhcCCC---cccCCC
Q 012322 399 DALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAET---TLLPGR 465 (466)
Q Consensus 399 ~~l~~L~~~~~l~~~~~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~f~~~~ 465 (466)
.|++.|.++||+|.+|.+|++|+.|+.+|+||++|+|++.+..++|+.++++|+|+||+++ .|..+.
T Consensus 437 ~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~ 506 (845)
T COG1643 437 AALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDV 506 (845)
T ss_pred HHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 566654
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-90 Score=638.50 Aligned_cols=454 Identities=49% Similarity=0.811 Sum_probs=435.5
Q ss_pred CCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeee
Q 012322 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (466)
Q Consensus 3 ~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g 82 (466)
+||+|++++++++.+.+++.++++|.|||||||++|++...........+.|++|+|.++.+++.++++++....|..+|
T Consensus 45 ~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVG 124 (699)
T KOG0925|consen 45 ELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVG 124 (699)
T ss_pred cCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhcc
Confidence 69999999999999999999999999999999999999987766656789999999999999999999999999999999
Q ss_pred eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccCh
Q 012322 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (466)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~ 162 (466)
|.+++++....++-+.|+|.|+|++..++++.+..+++||+||||+|++.+|.+.++++.+...++ +.++|+||||++.
T Consensus 125 ysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~a 203 (699)
T KOG0925|consen 125 YSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLDA 203 (699)
T ss_pred ccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccch
Confidence 999999999999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred hHHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccC
Q 012322 163 EKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE 242 (466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~ 242 (466)
.+++.||+++|++.++| .+|++++|.+....+|+++.+..++++|..+++|.+|||+++.++++.+++.+......+..
T Consensus 204 ~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~ 282 (699)
T KOG0925|consen 204 EKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGP 282 (699)
T ss_pred HHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999987776664
Q ss_pred CCCCCeEEEeecCCCCHHHHhcccCCCCCC-----cceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccce
Q 012322 243 GSCMDAVILPLHGSLPPEMQVRVFSPPPPN-----CRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDV 317 (466)
Q Consensus 243 ~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g-----~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~ 317 (466)
. .....|.++| +.++..+++..+.. .+||+|+|+++|.++++++|.+|||.|+.++++|||+-++..+..
T Consensus 283 ~-~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv 357 (699)
T KOG0925|consen 283 Q-VGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLV 357 (699)
T ss_pred c-cCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeee
Confidence 3 3578899999 77778888776532 579999999999999999999999999999999999999999999
Q ss_pred eeecHHHHHHhccccCCCCCCeEEEecCccchhhhCCCCCCCccccCCchHHHHHHHhCCCCCCccccccCCCCCCHHHH
Q 012322 318 VQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESL 397 (466)
Q Consensus 318 ~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~~ 397 (466)
.|||++++.||+|||||.+||+||+||+++.+...|.+.+.|||++++|.+++|++|.+|+++ +..|+|+|||.++++
T Consensus 358 ~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~d--lvhfdfmDpPAPEtL 435 (699)
T KOG0925|consen 358 SPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDD--LVHFDFMDPPAPETL 435 (699)
T ss_pred ccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCccc--ccCCcCCCCCChHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHcccccCCCCCCHHHHHHccCCCCHHHHHHHHHhhhhCCHHHHHHHhhhhcCCCcccCCC
Q 012322 398 EDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGR 465 (466)
Q Consensus 398 ~~~l~~L~~~~~l~~~~~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~f~~~~ 465 (466)
.+|++.|..++++|.||++|++|..|+++|+||++|||++.+.+|+|..|+++|+||+|++++|++|+
T Consensus 436 MrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~ 503 (699)
T KOG0925|consen 436 MRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPT 503 (699)
T ss_pred HHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.8e-85 Score=691.07 Aligned_cols=450 Identities=40% Similarity=0.662 Sum_probs=410.9
Q ss_pred CCCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCee
Q 012322 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (466)
Q Consensus 2 ~~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~ 81 (466)
.+|||++++++|++.+.++++++|+|+|||||||++|+++........+.|++++|++..+..+++++++.++...+..+
T Consensus 71 ~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~V 150 (1294)
T PRK11131 71 ENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCV 150 (1294)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhccee
Confidence 47999999999999999999999999999999999999988765544458899999999999999999999999899999
Q ss_pred eeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
||.++++.+...+++|+++|+|.+++.+..++.+.++++|||||||+++++.|++..+++.++..++ +.|+|+||||++
T Consensus 151 GY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rp-dlKvILmSATid 229 (1294)
T PRK11131 151 GYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRP-DLKVIITSATID 229 (1294)
T ss_pred ceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCC-CceEEEeeCCCC
Confidence 9999999888889999999999999999988899999999999999999999999988888887665 889999999999
Q ss_pred hhHHHhhcCCCCeEeeCCCcCceeeeecCCCCC------chHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHH
Q 012322 162 GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPT------SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLED 235 (466)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~ 235 (466)
.+.+.++|.+.+++.++++.+|+++.|.+.... +++...+..+..+. ....|++|||+||+++++.+++.|.+
T Consensus 230 ~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~ 308 (1294)
T PRK11131 230 PERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNK 308 (1294)
T ss_pred HHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999988765322 23333333333332 45678999999999999999999987
Q ss_pred hhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCcccc
Q 012322 236 KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (466)
Q Consensus 236 ~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~ 315 (466)
.. .....+.++||+|++++|.++++. .|.++||||||++|+|||||+|++|||+|+.+.+.||+.+|+..+
T Consensus 309 ~~-------~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~L 379 (1294)
T PRK11131 309 LN-------LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRL 379 (1294)
T ss_pred cC-------CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccC
Confidence 51 124568999999999999999986 478999999999999999999999999999999999999999999
Q ss_pred ceeeecHHHHHHhccccCCCCCCeEEEecCccchhhhCCCCCCCccccCCchHHHHHHHhCCCCCCccccccCCCCCCHH
Q 012322 316 DVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSE 395 (466)
Q Consensus 316 ~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~ 395 (466)
+..|+|+++|.||+|||||.++|.||+||++++|.. +++++.|||++.+|..++|+++++|+.+ +..|+|++||+.+
T Consensus 380 p~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~-~~~~~~PEIlR~~L~~viL~lk~lgl~d--i~~F~fldpP~~~ 456 (1294)
T PRK11131 380 PIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS-RPEFTDPEILRTNLASVILQMTALGLGD--IAAFPFVEAPDKR 456 (1294)
T ss_pred CeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHh-hhcccCCccccCCHHHHHHHHHHcCCCC--cceeeCCCCCCHH
Confidence 999999999999999999999999999999999987 9999999999999999999999999988 8899999999999
Q ss_pred HHHHHHHHHHHcccccCC-----CCCCHHHHHHccCCCCHHHHHHHHHhhhhCCHHHHHHHhhhhcCCCcccCCC
Q 012322 396 SLEDALKQLYLIDAIDEN-----GSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGR 465 (466)
Q Consensus 396 ~~~~~l~~L~~~~~l~~~-----~~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~f~~~~ 465 (466)
++.++++.|.++||||.+ +++|++|+.|++||+||++|||++.|..++|++|+++|+|+||+++||..|.
T Consensus 457 ~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~ 531 (1294)
T PRK11131 457 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPM 531 (1294)
T ss_pred HHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCc
Confidence 999999999999999864 5799999999999999999999999999999999999999999999999885
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.5e-84 Score=688.29 Aligned_cols=450 Identities=43% Similarity=0.702 Sum_probs=413.5
Q ss_pred CCCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCee
Q 012322 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (466)
Q Consensus 2 ~~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~ 81 (466)
.+|||++++++|++++.++++++|+|+|||||||++|+++........+.|++++|+|..+..+++++++.++..+|..+
T Consensus 64 ~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~V 143 (1283)
T TIGR01967 64 DNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKV 143 (1283)
T ss_pred CCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEE
Confidence 37999999999999999999999999999999999999998776544568999999999999999999999999999999
Q ss_pred eeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
||.++++...+.+++|.++|+|.|++.+..++.+.++++|||||+|+|+++.|+++.+++.++..++ +.|+|+||||++
T Consensus 144 GY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp-dLKlIlmSATld 222 (1283)
T TIGR01967 144 GYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP-DLKIIITSATID 222 (1283)
T ss_pred eeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCC-CCeEEEEeCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999987776 899999999999
Q ss_pred hhHHHhhcCCCCeEeeCCCcCceeeeecCCCCC------chHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHH
Q 012322 162 GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPT------SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLED 235 (466)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~ 235 (466)
.+.+.++|++++++.++++.+|+++.|.+.... ++....+..+..+. .+..|++|||+|++++++.+++.|.+
T Consensus 223 ~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~-~~~~GdILVFLpg~~EI~~l~~~L~~ 301 (1283)
T TIGR01967 223 PERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELF-AEGPGDILIFLPGEREIRDAAEILRK 301 (1283)
T ss_pred HHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHH-hhCCCCEEEeCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999988754321 23333333333333 34568999999999999999999987
Q ss_pred hhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCcccc
Q 012322 236 KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (466)
Q Consensus 236 ~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~ 315 (466)
... .+..+.++||+|+.++|.++++.+ +..+||||||++|+|||||+|++|||+|+++.+.||+.+|+..+
T Consensus 302 ~~~-------~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L 372 (1283)
T TIGR01967 302 RNL-------RHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRL 372 (1283)
T ss_pred cCC-------CCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcccc
Confidence 521 256799999999999999998875 35799999999999999999999999999999999999999999
Q ss_pred ceeeecHHHHHHhccccCCCCCCeEEEecCccchhhhCCCCCCCccccCCchHHHHHHHhCCCCCCccccccCCCCCCHH
Q 012322 316 DVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSE 395 (466)
Q Consensus 316 ~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~ 395 (466)
+..|+|+++|.||+|||||.++|.||+||++++|.. +++++.|||++.+|..++|+++++|+.+ +..|+|++||+.+
T Consensus 373 ~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~-~~~~~~PEIlR~~L~~viL~l~~lg~~d--i~~f~fldpP~~~ 449 (1283)
T TIGR01967 373 PIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNS-RPEFTDPEILRTNLASVILQMLALRLGD--IAAFPFIEAPDPR 449 (1283)
T ss_pred CCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHh-hhhccCcccccccHHHHHHHHHhcCCCC--cccccCCCCCCHH
Confidence 999999999999999999999999999999999988 8999999999999999999999999988 8899999999999
Q ss_pred HHHHHHHHHHHcccccCCC---CCCHHHHHHccCCCCHHHHHHHHHhhhhCCHHHHHHHhhhhcCCCcccCCC
Q 012322 396 SLEDALKQLYLIDAIDENG---SITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGR 465 (466)
Q Consensus 396 ~~~~~l~~L~~~~~l~~~~---~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~f~~~~ 465 (466)
++..+++.|.++|+||.+| ++|++|+.|+.||+||++|+||+.|..++|++++++|+|+||+++||..|.
T Consensus 450 ~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~ 522 (1283)
T TIGR01967 450 AIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPM 522 (1283)
T ss_pred HHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcc
Confidence 9999999999999999998 799999999999999999999999999999999999999999999998764
No 8
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.2e-84 Score=672.94 Aligned_cols=448 Identities=36% Similarity=0.569 Sum_probs=411.0
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
|||+++.++|++.+.++++++++|+|||||||++++.+..... .+.++++++|+|+++.++++++++.++..++..+||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 8999999999999999999999999999999999988776543 346899999999999999999999999999999999
Q ss_pred eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChh
Q 012322 84 AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (466)
Q Consensus 84 ~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~ 163 (466)
.++++.....+++|+++|+|.+++.+..++.+.++++|||||+|+++++.|+...+++.+....+.+.++|+||||++.+
T Consensus 80 ~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 80 RVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 99998887788999999999999999888899999999999999999999998888888776655689999999999988
Q ss_pred HHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCC
Q 012322 164 KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEG 243 (466)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~ 243 (466)
.+.+||++++++.++++.+|++.+|......+++...+...+........|++|||+|++++++.+++.|.+.+.
T Consensus 160 ~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~----- 234 (819)
T TIGR01970 160 RLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLD----- 234 (819)
T ss_pred HHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcC-----
Confidence 899999999999999999999999887655554443333333333334568999999999999999999987531
Q ss_pred CCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHH
Q 012322 244 SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKV 323 (466)
Q Consensus 244 ~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~ 323 (466)
.++.+.++||+|++++|.++++.|++|+++||||||++|+|||||+|++|||+|+++...||+.+|+..+...|+|++
T Consensus 235 --~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 312 (819)
T TIGR01970 235 --SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQA 312 (819)
T ss_pred --CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHH
Confidence 268899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCCeEEEecCccchhhhCCCCCCCccccCCchHHHHHHHhCCCCCCccccccCCCCCCHHHHHHHHHH
Q 012322 324 QANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQ 403 (466)
Q Consensus 324 ~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 403 (466)
+|.||+|||||.++|.||+||+++++.. +.++..|||.+.+|..++|+++.+|+.+ ...|+|++||+.+++..|++.
T Consensus 313 sa~QR~GRAGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~~L~~~~L~l~~~g~~~--~~~~~~l~~P~~~~i~~a~~~ 389 (819)
T TIGR01970 313 SATQRAGRAGRLEPGVCYRLWSEEQHQR-LPAQDEPEILQADLSGLALELAQWGAKD--PSDLRWLDAPPSVALAAARQL 389 (819)
T ss_pred HHHhhhhhcCCCCCCEEEEeCCHHHHHh-hhcCCCcceeccCcHHHHHHHHHcCCCC--hhhCCCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999999987 9999999999999999999999999987 678999999999999999999
Q ss_pred HHHcccccCCCCCCHHHHHHccCCCCHHHHHHHHHhhhhCCHHHHHHHhhhhcCCCccc
Q 012322 404 LYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLL 462 (466)
Q Consensus 404 L~~~~~l~~~~~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~f~ 462 (466)
|..+|+||++|++|++|+.|+++|++|++|+|++.|..++|.+++++|+|+|+.++++.
T Consensus 390 L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~ 448 (819)
T TIGR01970 390 LQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPR 448 (819)
T ss_pred HHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999764
No 9
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=6.8e-82 Score=658.14 Aligned_cols=448 Identities=34% Similarity=0.554 Sum_probs=408.2
Q ss_pred CCCCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCe
Q 012322 1 MANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (466)
Q Consensus 1 ~~~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 80 (466)
|++|||+++.++|++++.++++++++|||||||||++++.+...... +.++++++|+|+++.|+++++++.++..++..
T Consensus 1 ~~~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 1 MSSLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-NGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-CCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 78999999999999999999999999999999999999877755432 34899999999999999999999999999999
Q ss_pred eeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
+||.++++......++|+|+|+|.+.+.+..++.+.++++||+||+|+++++.|+.+.+++.+.+..+++.++++||||+
T Consensus 80 VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl 159 (812)
T PRK11664 80 VGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATL 159 (812)
T ss_pred EEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCC
Confidence 99999988877788899999999999999888899999999999999999999998888888776655689999999999
Q ss_pred ChhHHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhc
Q 012322 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~ 240 (466)
+.+.+.+|+.+++++.++++.++++.+|......+++...+...+........|++|||+||+++++.+++.|.+...
T Consensus 160 ~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-- 237 (812)
T PRK11664 160 DNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA-- 237 (812)
T ss_pred CHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc--
Confidence 988899999999999999999999999887665555554444334444444578999999999999999999987421
Q ss_pred cCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeee
Q 012322 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQI 320 (466)
Q Consensus 241 ~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~ 320 (466)
.++.+.++||+|+.++|.++++.|++|+++||||||++|+|||||+|++|||+|+++...||+.+|+..+...|+
T Consensus 238 -----~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 312 (812)
T PRK11664 238 -----SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRI 312 (812)
T ss_pred -----CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEee
Confidence 267899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhccccCCCCCCeEEEecCccchhhhCCCCCCCccccCCchHHHHHHHhCCCCCCccccccCCCCCCHHHHHHH
Q 012322 321 SKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDA 400 (466)
Q Consensus 321 s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~~~~~ 400 (466)
|+++|.||+|||||.++|.||+||+++++.. +.++..|||++++|+.++|.++++|..+ ...|+|+|||+..++..|
T Consensus 313 Skasa~QR~GRaGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL~~~~L~l~~~g~~~--~~~~~~ld~P~~~~~~~A 389 (812)
T PRK11664 313 SQASMTQRAGRAGRLEPGICLHLYSKEQAER-AAAQSEPEILHSDLSGLLLELLQWGCHD--PAQLSWLDQPPAAALAAA 389 (812)
T ss_pred chhhhhhhccccCCCCCcEEEEecCHHHHhh-CccCCCCceeccchHHHHHHHHHcCCCC--HHhCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999987 9999999999999999999999999987 778999999999999999
Q ss_pred HHHHHHcccccCCCCCCHHHHHHccCCCCHHHHHHHHHhhhhCCHH--HHHHHhhhhcCCC
Q 012322 401 LKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLS--QALTVAAMLSAET 459 (466)
Q Consensus 401 l~~L~~~~~l~~~~~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~ 459 (466)
++.|..+|+||++|+||++|+.|++||++|++|+|++.|..++|.. .++.++|+++-++
T Consensus 390 ~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~ 450 (812)
T PRK11664 390 KRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPP 450 (812)
T ss_pred HHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999999999998754 7888888887653
No 10
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-82 Score=614.72 Aligned_cols=458 Identities=45% Similarity=0.756 Sum_probs=429.8
Q ss_pred CCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCC-----CcEEEEeCchhHHHHHHHHHHHHHhCCcc
Q 012322 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK-----SGIIGVTQPRRVAAVSVARRVAQELGVRL 77 (466)
Q Consensus 3 ~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~-----~~~i~~~~p~~~l~~~~~~~~~~~~~~~~ 77 (466)
+|||....++|+++|.++..+||+|.|||||||++|+++++..+.. ++.|-+++|+|.++...+++++.+++. .
T Consensus 254 ~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~ 332 (1172)
T KOG0926|consen 254 DLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-L 332 (1172)
T ss_pred cCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-C
Confidence 6999999999999999999999999999999999999999887643 458889999999999999999999988 7
Q ss_pred CCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh---------
Q 012322 78 GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA--------- 148 (466)
Q Consensus 78 ~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~--------- 148 (466)
+..+||.++++......+.|.|+|.|.|++.+.++..+.++++||+||||+|++++|.+.+++.++...+.
T Consensus 333 ~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~ 412 (1172)
T KOG0926|consen 333 GSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQI 412 (1172)
T ss_pred ccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred cCceEEEEecccChhHHH---hhcCC-CCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHH
Q 012322 149 SKLKILITSATLDGEKVS---KFFSN-CPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (466)
Q Consensus 149 ~~~~ii~~SAT~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~ 224 (466)
...++|+||||+-..+|. ..|.. +|++.++.|.||+.++|......+|+.+.+.....+|.+-+.|.+|||+.+..
T Consensus 413 kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQq 492 (1172)
T KOG0926|consen 413 KPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQ 492 (1172)
T ss_pred CceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChH
Confidence 257899999999765554 44543 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcc---------------------------------------------------------------
Q 012322 225 DIEKLVSKLEDKIRSLD--------------------------------------------------------------- 241 (466)
Q Consensus 225 ~~~~l~~~L~~~~~~~~--------------------------------------------------------------- 241 (466)
++..+++.|++.+....
T Consensus 493 EV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~ 572 (1172)
T KOG0926|consen 493 EVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALA 572 (1172)
T ss_pred HHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccc
Confidence 99999999998743100
Q ss_pred --------------------------CCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEE
Q 012322 242 --------------------------EGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (466)
Q Consensus 242 --------------------------~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~V 295 (466)
...+...-|.++|+-|+.+.+.++|+..++|.+-++||||+||++++||+|+||
T Consensus 573 De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYV 652 (1172)
T KOG0926|consen 573 DENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYV 652 (1172)
T ss_pred cccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEE
Confidence 003346779999999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchhhhCCCCCCCccccCCchHHHHHHHh
Q 012322 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKS 375 (466)
Q Consensus 296 I~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p~i~~~~l~~~~l~l~~ 375 (466)
||+|+.|...||..+|+..+...|+|+++.-||+|||||.+||+||+||+...|.+.|.++..|||++.+.+.++|++|+
T Consensus 653 VD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKs 732 (1172)
T KOG0926|consen 653 VDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKS 732 (1172)
T ss_pred EeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHHHHHHccCCCCHHHHHHHHHhhhhCCHHHHHHHhhhh
Q 012322 376 LDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAML 455 (466)
Q Consensus 376 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~L~~~~~l~~~~~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 455 (466)
+++++ +..|+|++||....++.|...|..+||||.+|.+|++|+.|+.+|++|+.+|||+-+.+++|+.-.+.++++|
T Consensus 733 MnI~k--VvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaL 810 (1172)
T KOG0926|consen 733 MNIDK--VVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSAL 810 (1172)
T ss_pred cCccc--eecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccC
Q 012322 456 SAETTLLP 463 (466)
Q Consensus 456 ~~~~~f~~ 463 (466)
|++.+|+.
T Consensus 811 sv~e~~i~ 818 (1172)
T KOG0926|consen 811 SVYEVLIV 818 (1172)
T ss_pred hccchhhh
Confidence 99999874
No 11
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=2.1e-81 Score=638.51 Aligned_cols=461 Identities=41% Similarity=0.670 Sum_probs=416.8
Q ss_pred CCCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcC--CCcEEEEeCchhHHHHHHHHHHHHHhCCccCC
Q 012322 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT--KSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (466)
Q Consensus 2 ~~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~--~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 79 (466)
++||+|+++++|++++.++++++|+|.|||||||++|+++...... +...++|++|+|..|..++++++++.+...+.
T Consensus 170 ~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 170 ESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred HhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 3799999999999999999999999999999999999999876433 33489999999999999999999999999999
Q ss_pred eeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecc
Q 012322 80 EVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (466)
Q Consensus 80 ~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (466)
.+||.++.+......+.+.|||.|.|++.+..++.+.++++||+||+|+|+.++|+++-+++.++..++ +.++|+||||
T Consensus 250 ~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p-~LkvILMSAT 328 (924)
T KOG0920|consen 250 EVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP-DLKVILMSAT 328 (924)
T ss_pred eeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC-CceEEEeeee
Confidence 999999999999888999999999999999999999999999999999999999999999999999887 9999999999
Q ss_pred cChhHHHhhcCCCCeEeeCCCcCceeeeecCCC-----------------CCc--------------hHHHHHHHHHHHh
Q 012322 160 LDGEKVSKFFSNCPTLNVPGKLYPVEILHSKER-----------------PTS--------------YLESALKTAIDIH 208 (466)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~--------------~~~~~~~~~~~~~ 208 (466)
++.+.+.+||++++++.++|+.+|+..+|.+.. ... ..+.....+..++
T Consensus 329 ~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~ 408 (924)
T KOG0920|consen 329 LDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYID 408 (924)
T ss_pred cchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcc
Confidence 999999999999999999999999987764320 000 0111222333444
Q ss_pred hcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccc
Q 012322 209 VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLT 288 (466)
Q Consensus 209 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gid 288 (466)
.....|.+|||+|+.+++..+++.|......... .++.+.++|+.|+.++++.++...+.|.+|||+|||++|++|+
T Consensus 409 ~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~---~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSIT 485 (924)
T KOG0920|consen 409 EREFEGAILVFLPGWEEILQLKELLEVNLPFADS---LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSIT 485 (924)
T ss_pred cCCCCceEEEEcCCHHHHHHHHHHhhhccccccc---cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhccc
Confidence 5566899999999999999999999764322111 3688999999999999999999999999999999999999999
Q ss_pred cCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchhhhCCCCCCCccccCCchH
Q 012322 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAG 368 (466)
Q Consensus 289 ip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p~i~~~~l~~ 368 (466)
||||-||||+|+.|++.||+..++..+...|+|+++..||+|||||.++|.||+||++..|+..+..++.|||+|.+|.+
T Consensus 486 IdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~ 565 (924)
T KOG0920|consen 486 IDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEE 565 (924)
T ss_pred ccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999955559999999999999
Q ss_pred HHHHHHhCCCCCCccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHHHHHHccCCCCHHHHHHHHHhhhhCCHHHH
Q 012322 369 SVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQA 448 (466)
Q Consensus 369 ~~l~l~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~L~~~~~l~~~~~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (466)
++|++|.+++.+........++||+.+++..|+..|.++||++.+.++|++|+.++.+|+||++||++++|..|+|++++
T Consensus 566 l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~ 645 (924)
T KOG0920|consen 566 LCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPA 645 (924)
T ss_pred hhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccccchh
Confidence 99999998887743233367899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCcccCCCC
Q 012322 449 LTVAAMLSAETTLLPGRS 466 (466)
Q Consensus 449 ~~i~~~~~~~~~f~~~~~ 466 (466)
++|+|+++.++||.-|.+
T Consensus 646 l~iaa~Ls~k~PF~~~~~ 663 (924)
T KOG0920|consen 646 LTIAAALSFKSPFVSPLG 663 (924)
T ss_pred hhHHHHhccCCCcccCCC
Confidence 999999999999998864
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=9e-57 Score=457.83 Aligned_cols=396 Identities=21% Similarity=0.311 Sum_probs=302.6
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc-------------C-cCCCcEEEEeCchhHHHHHHHHHHHHHh
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-------------G-YTKSGIIGVTQPRRVAAVSVARRVAQEL 73 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~-------------~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 73 (466)
..|+++++.+.+|++++++|+||||||+++|+++... . ...+..+++++|+++++.|+..++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 3566889999999999999999999999999877531 0 1134589999999999999999988776
Q ss_pred CCccCCeeeeeEeecccc-------CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 74 GVRLGEEVGYAIRFEDRT-------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 74 ~~~~~~~~g~~~~~~~~~-------~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
+............++... ....+++++|++. ....+.++++|||||||++....+.++.+++.+...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 643211111122222211 1245788998753 223678999999999999999998888877655432
Q ss_pred hhcCceEEEEecccCh--hHHHhhcCCCCeEeeCCCc-CceeeeecCCCC-----CchHHHHHHHHHHHhh---cCCCCC
Q 012322 147 RASKLKILITSATLDG--EKVSKFFSNCPTLNVPGKL-YPVEILHSKERP-----TSYLESALKTAIDIHV---REPEGD 215 (466)
Q Consensus 147 ~~~~~~ii~~SAT~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~ 215 (466)
..|+++||||++. +.+.+|++++..+.++++. ++++..|..... .++.......+...+. ...+++
T Consensus 321 ---~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~ 397 (675)
T PHA02653 321 ---IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSS 397 (675)
T ss_pred ---cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCc
Confidence 3489999999964 4688999999999999875 888888764331 1222222222233222 124579
Q ss_pred EEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCC-CCCcceEEEEecccccccccCCeEE
Q 012322 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP-PPNCRRFIVSTNIAETSLTVDGVVY 294 (466)
Q Consensus 216 ~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f-~~g~~~ilvaT~~~~~Gidip~v~~ 294 (466)
+|||+||+++++.+++.|.+.. +++.+.++||+|++.+ +.+++| ++|+++||||||++|+|||||+|++
T Consensus 398 iLVFlpg~~ei~~l~~~L~~~~--------~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 398 GIVFVASVSQCEEYKKYLEKRL--------PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred EEEEECcHHHHHHHHHHHHhhc--------CCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 9999999999999999998762 2678999999999753 444555 6899999999999999999999999
Q ss_pred EEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchhhhCCCCCCCccccCCchHHHHHHH
Q 012322 295 VIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLK 374 (466)
Q Consensus 295 VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p~i~~~~l~~~~l~l~ 374 (466)
|||+|+.+.+. +..+. ..|+|+++|.||+|||||.++|.||+||+++++. ..+++..++|..++|+++
T Consensus 468 VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~------pI~ri~~~~L~~~vL~lk 535 (675)
T PHA02653 468 VYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLK------PIKRIDSEFLHNYILYAK 535 (675)
T ss_pred EEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHhH------HHHHHhHHHHHHHHHHHH
Confidence 99999876553 33333 4689999999999999999999999999998741 133333344889999999
Q ss_pred hCCCCCCccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHH--HHHHccCCCCHHHHHHHHHhhhhC
Q 012322 375 SLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSI--GRTMAELPLEPSLSRMLMEANEFG 443 (466)
Q Consensus 375 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~L~~~~~l~~~~~~T~l--G~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
++|++. ..+.|++||+.+++..|++.|..+|++|+ ++|.+ |+-++-+ +.||++++|....
T Consensus 536 ~~g~~~---~~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~~~ 597 (675)
T PHA02653 536 YFNLTL---PEDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGILA 597 (675)
T ss_pred HcCCCC---cccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccHhH
Confidence 999954 33459999999999999999999998755 79999 9999988 9999999886543
No 13
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.8e-45 Score=385.98 Aligned_cols=419 Identities=19% Similarity=0.216 Sum_probs=283.3
Q ss_pred chHhHHHHHHH-HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHh--CCccCCeee
Q 012322 6 ILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGEEVG 82 (466)
Q Consensus 6 i~~~q~~i~~~-i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~--~~~~~~~~g 82 (466)
+++.|.+.++. +.+|+++++++|||||||..+...+..... .+.+++++.|+++++.|+++.+.+.. +..++...|
T Consensus 24 l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tG 102 (737)
T PRK02362 24 LYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTG 102 (737)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 57789998887 889999999999999999554433322221 46689999999999999999887532 333333333
Q ss_pred eeEeeccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHH---HHHHHHHHHHHhhhcCceEEEEec
Q 012322 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTD---ILLGLVKRLVNLRASKLKILITSA 158 (466)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~---~~~~~l~~i~~~~~~~~~ii~~SA 158 (466)
... .........+|+++||+++..++.+.. ++++++++|+||+|. ..+.+ .+..++.++.... .+.|++++||
T Consensus 103 d~~-~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~-l~d~~rg~~le~il~rl~~~~-~~~qii~lSA 179 (737)
T PRK02362 103 DYD-SRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL-IDSANRGPTLEVTLAKLRRLN-PDLQVVALSA 179 (737)
T ss_pred CcC-ccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc-cCCCcchHHHHHHHHHHHhcC-CCCcEEEEcc
Confidence 211 111122457899999999988776543 688999999999994 33322 2333344444333 3789999999
Q ss_pred cc-ChhHHHhhcCCCCeEeeCCCcCceeee--------ecCCC---CCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHH
Q 012322 159 TL-DGEKVSKFFSNCPTLNVPGKLYPVEIL--------HSKER---PTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (466)
Q Consensus 159 T~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~ 226 (466)
|+ +.+.+.+|++... +....++.+.... +.... ...........+.... ..++++||||+|+++|
T Consensus 180 Tl~n~~~la~wl~~~~-~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~ 256 (737)
T PRK02362 180 TIGNADELADWLDAEL-VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTL--EEGGQCLVFVSSRRNA 256 (737)
T ss_pred cCCCHHHHHHHhCCCc-ccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHH--HcCCCeEEEEeCHHHH
Confidence 99 5577999986432 2222222222211 11000 0000022233333322 2467999999999999
Q ss_pred HHHHHHHHHhhhhc-------------------cCC-------CCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEe
Q 012322 227 EKLVSKLEDKIRSL-------------------DEG-------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST 280 (466)
Q Consensus 227 ~~l~~~L~~~~~~~-------------------~~~-------~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT 280 (466)
+.++..|.+..... ... .+...++.+|||||++++|..+++.|++|.++|||||
T Consensus 257 ~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT 336 (737)
T PRK02362 257 EGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISST 336 (737)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEec
Confidence 99999997653210 000 0112478999999999999999999999999999999
Q ss_pred cccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC---CCeEEEecCccc-----hhhh
Q 012322 281 NIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTV-----YHDE 352 (466)
Q Consensus 281 ~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~-----~~~~ 352 (466)
+++++|||+|++++||+. ...||+..|. .|.+..+|+||+|||||.+ .|.|+.+....+ +..+
T Consensus 337 ~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~ 407 (737)
T PRK02362 337 PTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERY 407 (737)
T ss_pred hhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHH
Confidence 999999999999999973 3456665433 5789999999999999983 499999986642 2221
Q ss_pred CCCCCCCcccc------CCchHHHHHHHhCCCCCCc-----cccccCCCCC------CHHHHHHHHHHHHHcccccCCC-
Q 012322 353 FLDVTVPEIQR------SSLAGSVLYLKSLDLSDIN-----VLKFDFLDPP------SSESLEDALKQLYLIDAIDENG- 414 (466)
Q Consensus 353 ~~~~~~p~i~~------~~l~~~~l~l~~~~~~~~~-----~~~~~~~~~p------~~~~~~~~l~~L~~~~~l~~~~- 414 (466)
+.. .|+-.. ..+...++.....+..... .....|+..+ ..+.++.+++.|.+.|+|+.++
T Consensus 408 l~~--~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~ 485 (737)
T PRK02362 408 IWA--DPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGE 485 (737)
T ss_pred HhC--CCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCC
Confidence 211 222222 2355666666666543210 1111232222 3456889999999999998775
Q ss_pred --CCCHHHHHHccCCCCHHHHHHHHHhhhh
Q 012322 415 --SITSIGRTMAELPLEPSLSRMLMEANEF 442 (466)
Q Consensus 415 --~~T~lG~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
.+|++|++++.++++|..+..+..+...
T Consensus 486 ~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~ 515 (737)
T PRK02362 486 TLEATELGHLVSRLYIDPLSAAEIIDGLEA 515 (737)
T ss_pred eEeEChHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 4999999999999999999999887664
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=9.4e-46 Score=388.08 Aligned_cols=422 Identities=17% Similarity=0.188 Sum_probs=279.0
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHh--CCccCCee
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGEEV 81 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~--~~~~~~~~ 81 (466)
..++++|.++++.+.+|++++++||||||||..+...+..... .+.+++++.|+++++.|+++.+.+.. +..+....
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~-~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~ 99 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL-AGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISI 99 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH-hCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 4578999999999999999999999999999765554443322 34678888899999999999886532 22222222
Q ss_pred eeeEeeccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHH---HHHHHHHHHHHhhhcCceEEEEe
Q 012322 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTD---ILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~---~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
|... .........+|+++||+.+...+...+ .+.+++++|+||+|+ ..+.+ .+..++..+.... .+.++|++|
T Consensus 100 G~~~-~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~-l~d~~rg~~le~ll~~~~~~~-~~~riI~lS 176 (674)
T PRK01172 100 GDYD-DPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI-IGDEDRGPTLETVLSSARYVN-PDARILALS 176 (674)
T ss_pred CCCC-CChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchh-ccCCCccHHHHHHHHHHHhcC-cCCcEEEEe
Confidence 2111 111112457999999999888776655 588999999999995 32222 2333333333333 478999999
Q ss_pred ccc-ChhHHHhhcCCCCeEeeCCCcCceeeee--cCCCC---CchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHH
Q 012322 158 ATL-DGEKVSKFFSNCPTLNVPGKLYPVEILH--SKERP---TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (466)
Q Consensus 158 AT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~ 231 (466)
||+ +.+.+++|++. ..+....+..|+.... ..... ..........++... ...++++||||+|+++++.++.
T Consensus 177 ATl~n~~~la~wl~~-~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~vLVF~~sr~~~~~~a~ 254 (674)
T PRK01172 177 ATVSNANELAQWLNA-SLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKET-VNDGGQVLVFVSSRKNAEDYAE 254 (674)
T ss_pred CccCCHHHHHHHhCC-CccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHH-HhCCCcEEEEeccHHHHHHHHH
Confidence 999 56779999864 3344444555554321 11000 000000011111111 1346799999999999999999
Q ss_pred HHHHhhhhccCC---------------CCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEE
Q 012322 232 KLEDKIRSLDEG---------------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVI 296 (466)
Q Consensus 232 ~L~~~~~~~~~~---------------~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI 296 (466)
.|.+........ .+...++.+|||+|++++|..+++.|++|.++|||||+++++|+|+|+.++||
T Consensus 255 ~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII 334 (674)
T PRK01172 255 MLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV 334 (674)
T ss_pred HHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE
Confidence 998764322100 00123588999999999999999999999999999999999999999987777
Q ss_pred eCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC---CCeEEEecCc-cchh---hhCCCCCCCccccCC----
Q 012322 297 DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPS-TVYH---DEFLDVTVPEIQRSS---- 365 (466)
Q Consensus 297 ~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~-~~~~---~~~~~~~~p~i~~~~---- 365 (466)
+ |.+ .|+. ....++|..+|.||+|||||.+ .|.++.+... ++++ ..+... |+-.++.
T Consensus 335 ~-~~~---~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~--~~pi~S~l~~~ 402 (674)
T PRK01172 335 R-DIT---RYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGE--PEPVISYMGSQ 402 (674)
T ss_pred c-Cce---EeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCC--CCceeecCCCc
Confidence 5 332 2332 1224689999999999999984 6777766533 2222 222222 2222221
Q ss_pred --chHHHHHHHhCCCCCC--ccccc---cCC--CCCC---HHHHHHHHHHHHHcccccCCC--CCCHHHHHHccCCCCHH
Q 012322 366 --LAGSVLYLKSLDLSDI--NVLKF---DFL--DPPS---SESLEDALKQLYLIDAIDENG--SITSIGRTMAELPLEPS 431 (466)
Q Consensus 366 --l~~~~l~l~~~~~~~~--~~~~~---~~~--~~p~---~~~~~~~l~~L~~~~~l~~~~--~~T~lG~~~~~~~~~~~ 431 (466)
+...++.....|.... ++..+ .|+ ..++ .+.++.+++.|.+.|+|+.++ .+|++|++++.+|++|.
T Consensus 403 ~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~ 482 (674)
T PRK01172 403 RKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPE 482 (674)
T ss_pred ccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHH
Confidence 1222344455554211 11111 333 3222 567899999999999998654 68999999999999999
Q ss_pred HHHHHHHhhhhC
Q 012322 432 LSRMLMEANEFG 443 (466)
Q Consensus 432 ~~~~~~~~~~~~ 443 (466)
.++.+..+....
T Consensus 483 t~~~~~~~l~~~ 494 (674)
T PRK01172 483 SALILKSAFDHD 494 (674)
T ss_pred HHHHHHHHhhcc
Confidence 999998877643
No 15
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-44 Score=347.79 Aligned_cols=313 Identities=21% Similarity=0.224 Sum_probs=240.8
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcC------cCCCcEEEEeCchhHHHHHHHHHHHHHhCCc---
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQELGVR--- 76 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~------~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~--- 76 (466)
..|..-+..+.+|++++.+|.|||||| +++|.+..... ...+.+++++.|+|+++.|+.+.+.+.....
T Consensus 116 pIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~ 195 (519)
T KOG0331|consen 116 PIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLR 195 (519)
T ss_pred hhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCcc
Confidence 456677888999999999999999999 77887777654 2346689999999999999988765443221
Q ss_pred cCCeeeeeEee--ccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh-hcCce
Q 012322 77 LGEEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLK 152 (466)
Q Consensus 77 ~~~~~g~~~~~--~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~-~~~~~ 152 (466)
.....|..... ........+|+++|||++..++.... .++++.++|+|||| ++++++|... +++++... +...|
T Consensus 196 ~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~q-I~~Il~~i~~~~rQ 273 (519)
T KOG0331|consen 196 STCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQ-IRKILSQIPRPDRQ 273 (519)
T ss_pred EEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHH-HHHHHHhcCCCccc
Confidence 22222211111 11223568999999999999996554 89999999999999 9999998777 67777766 43558
Q ss_pred EEEEecccChhH--H-HhhcCCCCeEeeCCCc-----CceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHH
Q 012322 153 ILITSATLDGEK--V-SKFFSNCPTLNVPGKL-----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (466)
Q Consensus 153 ii~~SAT~~~~~--~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~ 224 (466)
.++.|||.+.+. + .+|+.++..+.+.+.. ..+..+..... .......+..++..+....++++||||+|++
T Consensus 274 tlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 274 TLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKR 352 (519)
T ss_pred EEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchh
Confidence 999999998754 3 4677755555554331 11111111111 2223334445555555667789999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccce
Q 012322 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (466)
Q Consensus 225 ~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~ 304 (466)
.|++++..|+.. ++++..+||+.++.+|..+++.|++|+..||||||+|++|+|+|+|++||||++|+
T Consensus 353 ~~~~l~~~l~~~----------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~-- 420 (519)
T KOG0331|consen 353 TCDELARNLRRK----------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPN-- 420 (519)
T ss_pred hHHHHHHHHHhc----------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCC--
Confidence 999999999886 68899999999999999999999999999999999999999999999999999988
Q ss_pred eecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
+.+.|+||+||+||. +.|.++.+++..++..
T Consensus 421 ----------------~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 421 ----------------NVEDYVHRIGRTGRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred ----------------CHHHHHhhcCccccCCCCceEEEEEeHHHHHH
Confidence 666999999999997 8999999999988755
No 16
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=3.9e-45 Score=360.52 Aligned_cols=454 Identities=36% Similarity=0.576 Sum_probs=391.4
Q ss_pred CCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCC----cEEEEeCchhHHHHHHHHHHHHHhCCccC
Q 012322 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS----GIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (466)
Q Consensus 3 ~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~----~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 78 (466)
+||+..+.++|++.+.+++.++|.+.||+||||++.+.+++.-...+ ..+++.+|++..+..++++++++.+..++
T Consensus 376 ~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g 455 (1282)
T KOG0921|consen 376 ELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVG 455 (1282)
T ss_pred hCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhc
Confidence 68999999999999999999999999999999999988886643322 25678999999999999999999999999
Q ss_pred CeeeeeEeeccccC-ccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 79 EEVGYAIRFEDRTS-ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 79 ~~~g~~~~~~~~~~-~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
.++||++++++..+ ....|.++|-|.+++.+.+. +..+.++|+||.|++..++++++.+++.+....+ +.++++||
T Consensus 456 ~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~-dl~v~lms 532 (1282)
T KOG0921|consen 456 ETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMISTYR-DLRVVLMS 532 (1282)
T ss_pred ccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhhccch-hhhhhhhh
Confidence 99999999988775 55678899999999887654 5688999999999999999999999999988776 99999999
Q ss_pred cccChhHHHhhcCCCCeEeeCCCcCceeeeecCCC-------------C------------Cc-------------h---
Q 012322 158 ATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKER-------------P------------TS-------------Y--- 196 (466)
Q Consensus 158 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~------------~~-------------~--- 196 (466)
||++.+.+..||+..+...+.++.+|++.++.... . .+ +
T Consensus 533 atIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~ 612 (1282)
T KOG0921|consen 533 ATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNES 612 (1282)
T ss_pred cccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcch
Confidence 99999999999999999999998888765432110 0 00 0
Q ss_pred -------------HHHHHHHHH-HHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHH
Q 012322 197 -------------LESALKTAI-DIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQ 262 (466)
Q Consensus 197 -------------~~~~~~~~~-~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r 262 (466)
.....+.+. .+....-.|-++||.+..+.+..+..+|...-.. +....+.+++.|+.+...++
T Consensus 613 ~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~f---g~~~~y~ilp~Hsq~~~~eq 689 (1282)
T KOG0921|consen 613 TRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEF---GQANKYEILPLHSQLTSQEQ 689 (1282)
T ss_pred hhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhh---ccchhcccccchhhcccHhh
Confidence 000111111 1222334678999999999999999988654211 11236789999999999999
Q ss_pred hcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEE
Q 012322 263 VRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYR 342 (466)
Q Consensus 263 ~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~ 342 (466)
.++++..+.|..++|++|++++..+++.++.+|||.+..+...|-....+....+.|.|+-+..||.||+||.++|.|++
T Consensus 690 rkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~ 769 (1282)
T KOG0921|consen 690 RKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFH 769 (1282)
T ss_pred hhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceeccccccc
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred ecCccchhhhCCCCCCCccccCCchHHHHHHHhCCCCCCccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHHHHH
Q 012322 343 LYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRT 422 (466)
Q Consensus 343 l~~~~~~~~~~~~~~~p~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~L~~~~~l~~~~~~T~lG~~ 422 (466)
+.++..|.. +.++..|++.+.++.+..+..|.+.+.++......-+.||+...+..+-..|..++++|.++.+|++|+.
T Consensus 770 lcs~arF~~-l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~ 848 (1282)
T KOG0921|consen 770 LCSRARFEA-LEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRM 848 (1282)
T ss_pred ccHHHHHHH-HHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhh
Confidence 999999988 9999999999999999998888777666334445678999999999999999999999999999999999
Q ss_pred HccCCCCHHHHHHHHHhhhhCCHHHHHHHhhhhcCCCcccC
Q 012322 423 MAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLP 463 (466)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~f~~ 463 (466)
++++|+.|..++++..+.-++|.+-|+.+++..+...+|.+
T Consensus 849 la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~ 889 (1282)
T KOG0921|consen 849 LARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVP 889 (1282)
T ss_pred hhhccCcccccceeeechhhccchhhhhhhccccccccccc
Confidence 99999999999999999999999999999999999988764
No 17
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=7.9e-43 Score=367.50 Aligned_cols=430 Identities=16% Similarity=0.136 Sum_probs=277.3
Q ss_pred chHhHHHHHHH-HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHH--hCCccCCeee
Q 012322 6 ILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQE--LGVRLGEEVG 82 (466)
Q Consensus 6 i~~~q~~i~~~-i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~--~~~~~~~~~g 82 (466)
.+++|.+.+.. +.+|+++++++|||||||......+.......+.+++++.|+++++.|+++++.+. .+..+....|
T Consensus 24 l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~G 103 (720)
T PRK00254 24 LYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTG 103 (720)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 46788888875 89999999999999999954433322222224568999999999999999887642 2333333333
Q ss_pred eeEeeccccCccceEEEcCHHHHHHHHhhC-CCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc-
Q 012322 83 YAIRFEDRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL- 160 (466)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~-~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~- 160 (466)
... .......+.+|+++||+.+..++... .+++++++||+||+|. ..+.+.. ..+..++.....+.++|++|||+
T Consensus 104 d~~-~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~-l~~~~rg-~~le~il~~l~~~~qiI~lSATl~ 180 (720)
T PRK00254 104 DYD-STDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL-IGSYDRG-ATLEMILTHMLGRAQILGLSATVG 180 (720)
T ss_pred CCC-CchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc-cCCccch-HHHHHHHHhcCcCCcEEEEEccCC
Confidence 111 11112345789999999998877544 3789999999999994 3333222 22444444444578999999999
Q ss_pred ChhHHHhhcCCCCeEeeCCCcCcee--eeecC-----CCC-CchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHH
Q 012322 161 DGEKVSKFFSNCPTLNVPGKLYPVE--ILHSK-----ERP-TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~ 232 (466)
+.+.+.+|++... +....++.+.. +.+.. ... ..+.......+.+... .++++||||+|++.|+.++..
T Consensus 181 n~~~la~wl~~~~-~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~ 257 (720)
T PRK00254 181 NAEELAEWLNAEL-VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALE 257 (720)
T ss_pred CHHHHHHHhCCcc-ccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHH
Confidence 5678899986432 22233333332 11111 000 1111222222222222 357999999999999999888
Q ss_pred HHHhhhhcc----------------CC-------CCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEeccccccccc
Q 012322 233 LEDKIRSLD----------------EG-------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (466)
Q Consensus 233 L~~~~~~~~----------------~~-------~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi 289 (466)
|.+.+.... .. .+...++.+|||+|++++|..+++.|++|.++|||||+++++|||+
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvni 337 (720)
T PRK00254 258 LAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINL 337 (720)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCC
Confidence 865422100 00 0013469999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC---CCCeEEEecCccc----hhhhCCCCCCCccc
Q 012322 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTV----YHDEFLDVTVPEIQ 362 (466)
Q Consensus 290 p~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~---~~G~~~~l~~~~~----~~~~~~~~~~p~i~ 362 (466)
|++++||... ..|+ ..++ ...+..+|+||+|||||. ..|.++.+.+.++ +..++. ..|+-.
T Consensus 338 pa~~vVI~~~----~~~~-~~~~-----~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~--~~pe~l 405 (720)
T PRK00254 338 PAFRVIIRDT----KRYS-NFGW-----EDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIF--GKPEKL 405 (720)
T ss_pred CceEEEECCc----eEcC-CCCc-----eeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHh--CCchhh
Confidence 9999999632 2332 1122 344678999999999996 4799999886543 222111 112211
Q ss_pred ------cCCchHHHHHHHhCCCCCCc-----cc--cccCCCCCC----HHHHHHHHHHHHHcccccCC--C--CCCHHHH
Q 012322 363 ------RSSLAGSVLYLKSLDLSDIN-----VL--KFDFLDPPS----SESLEDALKQLYLIDAIDEN--G--SITSIGR 421 (466)
Q Consensus 363 ------~~~l~~~~l~l~~~~~~~~~-----~~--~~~~~~~p~----~~~~~~~l~~L~~~~~l~~~--~--~~T~lG~ 421 (466)
.+.+...++.....+..... .. .|-+...|+ .+.++.+++.|.+.++|+.+ + .+|++|+
T Consensus 406 ~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~ 485 (720)
T PRK00254 406 FSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGI 485 (720)
T ss_pred hccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHH
Confidence 12234445554444321100 01 111112233 34577889999999999653 2 5799999
Q ss_pred HHccCCCCHHHHHHHHHhhhh----CCHHHHHHHhh
Q 012322 422 TMAELPLEPSLSRMLMEANEF----GCLSQALTVAA 453 (466)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~ 453 (466)
+++.++++|..++.+..+..- .....++-+.+
T Consensus 486 ~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~ 521 (720)
T PRK00254 486 RTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIA 521 (720)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhh
Confidence 999999999999999877642 34444544443
No 18
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-44 Score=324.13 Aligned_cols=310 Identities=21% Similarity=0.235 Sum_probs=237.4
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcCc-CCCcEEEEeCchhHHHHHHHHHHHH---HhCCccCCeee
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQ---ELGVRLGEEVG 82 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~---~~~~~~~~~~g 82 (466)
..|.+.+..+..|++++..|.|||||| +++.+++..... .+....+++.|+|+++.|+++.+.. ..|..+...+|
T Consensus 86 ~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvG 165 (476)
T KOG0330|consen 86 KIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVG 165 (476)
T ss_pred hhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEec
Confidence 567888899999999999999999999 665555554433 3345899999999999999887632 23444444555
Q ss_pred eeEee--ccccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEec
Q 012322 83 YAIRF--EDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (466)
Q Consensus 83 ~~~~~--~~~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (466)
..... ......+++|+++|||.|.+++.+.. .+.+++++|+|||| +.++.+|... +..+++..|.+.+.+++||
T Consensus 166 G~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~-ld~ILk~ip~erqt~LfsA 243 (476)
T KOG0330|consen 166 GMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEE-LDYILKVIPRERQTFLFSA 243 (476)
T ss_pred CchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHH-HHHHHHhcCccceEEEEEe
Confidence 22111 11234679999999999999997443 78899999999999 9999998777 7888888888999999999
Q ss_pred ccChhH--HH-hhcCCCCeEeeCCCcCcee---eeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHH
Q 012322 159 TLDGEK--VS-KFFSNCPTLNVPGKLYPVE---ILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (466)
Q Consensus 159 T~~~~~--~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~ 232 (466)
|++.+. +. .-+.++..+.+....-.++ ..|...+. .+.+. .++.+.....++++||||+|...++.++-.
T Consensus 244 TMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-k~K~~---yLV~ll~e~~g~s~iVF~~t~~tt~~la~~ 319 (476)
T KOG0330|consen 244 TMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-KDKDT---YLVYLLNELAGNSVIVFCNTCNTTRFLALL 319 (476)
T ss_pred ecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc-cccch---hHHHHHHhhcCCcEEEEEeccchHHHHHHH
Confidence 997642 33 3344455555554332222 12221111 11111 122333334568999999999999999999
Q ss_pred HHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCc
Q 012322 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (466)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~ 312 (466)
|+.. ++.+.++||+|+++.|...++.|++|.+.|+||||++++|+|+|.|++||||++|.
T Consensus 320 L~~l----------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~---------- 379 (476)
T KOG0330|consen 320 LRNL----------GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPT---------- 379 (476)
T ss_pred HHhc----------CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCC----------
Confidence 9886 99999999999999999999999999999999999999999999999999999987
Q ss_pred cccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 313 ~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
+...|+||+||+||. .+|+++.|++..+.+.
T Consensus 380 --------~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~ 411 (476)
T KOG0330|consen 380 --------HSKDYIHRVGRTARAGRSGKAITLVTQYDVEL 411 (476)
T ss_pred --------cHHHHHHHcccccccCCCcceEEEEehhhhHH
Confidence 444899999999999 7999999999865543
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6.3e-43 Score=351.93 Aligned_cols=310 Identities=18% Similarity=0.246 Sum_probs=232.2
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcCcC-CCcEEEEeCchhHHHHHHHHHHHHHhC----CccCC
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRVAQELG----VRLGE 79 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~----~~~~~ 79 (466)
..+.|+++++.+.+|++++++|||||||| +++.+++...... .+..++++.|+++++.|+.+.+..... ..+..
T Consensus 27 ~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~ 106 (460)
T PRK11776 27 MTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLT 106 (460)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 45789999999999999999999999999 3333444433222 244789999999999999987755432 22222
Q ss_pred eeeeeEeec---cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 80 EVGYAIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 80 ~~g~~~~~~---~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
..|. .... .......+|+++|||.+..++.... .+.++++||+||+| +.++.++... +..++...+...++++
T Consensus 107 ~~Gg-~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~-l~~i~~~~~~~~q~ll 183 (460)
T PRK11776 107 LCGG-VPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDA-IDAIIRQAPARRQTLL 183 (460)
T ss_pred EECC-CChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHH-HHHHHHhCCcccEEEE
Confidence 2221 1111 1123568999999999999886544 68899999999999 6677666555 6777777777889999
Q ss_pred EecccChhH--H-HhhcCCCCeEeeCCCc--CceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHH
Q 012322 156 TSATLDGEK--V-SKFFSNCPTLNVPGKL--YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (466)
Q Consensus 156 ~SAT~~~~~--~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~ 230 (466)
+|||++... + ..++.++..+.+.... ..++..+......+ ....+..+.....++++||||+|+++++.++
T Consensus 184 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~ 259 (460)
T PRK11776 184 FSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDE----RLPALQRLLLHHQPESCVVFCNTKKECQEVA 259 (460)
T ss_pred EEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHH
Confidence 999997642 3 3445555555444322 12233332222222 3333444444455678999999999999999
Q ss_pred HHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCC
Q 012322 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (466)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~ 310 (466)
+.|.+. ++.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.
T Consensus 260 ~~L~~~----------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~-------- 321 (460)
T PRK11776 260 DALNAQ----------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR-------- 321 (460)
T ss_pred HHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC--------
Confidence 999876 78899999999999999999999999999999999999999999999999999876
Q ss_pred CccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchh
Q 012322 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (466)
Q Consensus 311 ~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (466)
+..+|+||+||+||. ..|.||.++++++..
T Consensus 322 ----------~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 322 ----------DPEVHVHRIGRTGRAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred ----------CHhHhhhhcccccCCCCcceEEEEEchhHHH
Confidence 666999999999999 689999999887653
No 20
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.4e-42 Score=348.57 Aligned_cols=313 Identities=22% Similarity=0.244 Sum_probs=225.7
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcC-----cCCCcEEEEeCchhHHHHHHHHHHHHHhC---C
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG-----YTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~-----~~~~~~i~~~~p~~~l~~~~~~~~~~~~~---~ 75 (466)
...+|.+.+..+.+|++++++|||||||| +++|.+..... ...+..+++++|+++|+.|+.+.+.+... .
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i 232 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKI 232 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCc
Confidence 35789999999999999999999999999 34555544321 12356899999999999998887655432 1
Q ss_pred ccCCeeeeeEeec--cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCce
Q 012322 76 RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (466)
Q Consensus 76 ~~~~~~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (466)
......|...... .......+|+++|||++.+.+.... .+.++++||+|||| +.++.++... ++.++...+.+.+
T Consensus 233 ~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~-i~~il~~~~~~~q 310 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQ-IRKIVSQIRPDRQ 310 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHH-HHHHHHhCCCCCe
Confidence 2111111110000 1112457899999999998886554 68899999999999 7777777665 5666665556889
Q ss_pred EEEEecccChhH--HH-hhcCCCC-eEeeCCCc----CceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHH
Q 012322 153 ILITSATLDGEK--VS-KFFSNCP-TLNVPGKL----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (466)
Q Consensus 153 ii~~SAT~~~~~--~~-~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~ 224 (466)
++++|||++.+. +. .++...+ .+.+.... ..+...+..... ......+..++..... ..+++||||++++
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~-~~k~~~L~~ll~~~~~-~~~k~LIF~~t~~ 388 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE-HEKRGKLKMLLQRIMR-DGDKILIFVETKK 388 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec-hhHHHHHHHHHHHhcc-cCCeEEEEecChH
Confidence 999999997642 33 3443322 23222111 111111111111 1111222222222221 4679999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccce
Q 012322 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (466)
Q Consensus 225 ~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~ 304 (466)
.|+.++..|+.. ++.+..+||++++++|..+++.|++|+.+|||||+++++|||+|+|++||++++|.
T Consensus 389 ~a~~l~~~L~~~----------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~-- 456 (545)
T PTZ00110 389 GADFLTKELRLD----------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPN-- 456 (545)
T ss_pred HHHHHHHHHHHc----------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCC--
Confidence 999999999865 77889999999999999999999999999999999999999999999999999876
Q ss_pred eecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchh
Q 012322 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (466)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (466)
+.++|+||+||+||. .+|.||.++++++..
T Consensus 457 ----------------s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 457 ----------------QIEDYVHRIGRTGRAGAKGASYTFLTPDKYR 487 (545)
T ss_pred ----------------CHHHHHHHhcccccCCCCceEEEEECcchHH
Confidence 677999999999999 789999999987654
No 21
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.2e-42 Score=344.40 Aligned_cols=310 Identities=18% Similarity=0.212 Sum_probs=226.2
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcCc-------CCCcEEEEeCchhHHHHHHHHHHHHHhC---
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY-------TKSGIIGVTQPRRVAAVSVARRVAQELG--- 74 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~~-------~~~~~i~~~~p~~~l~~~~~~~~~~~~~--- 74 (466)
..++|.++++.+.++++++++|||||||| +++.+++..... ....++++++|+++++.|+.+.+.+...
T Consensus 24 pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~ 103 (456)
T PRK10590 24 PTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN 103 (456)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 45789999999999999999999999999 333333332211 1123799999999999999988765443
Q ss_pred CccCCeeeeeEeec---cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 75 VRLGEEVGYAIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 75 ~~~~~~~g~~~~~~---~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
.......|. ...+ .......+|+++||+.++..+.... .+.++++||||||| +.++.++... ++.++...+..
T Consensus 104 ~~~~~~~gg-~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~-i~~il~~l~~~ 180 (456)
T PRK10590 104 IRSLVVFGG-VSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHD-IRRVLAKLPAK 180 (456)
T ss_pred CEEEEEECC-cCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHH-HHHHHHhCCcc
Confidence 222122221 1111 1123467999999999998876554 68999999999999 6666666555 56666666667
Q ss_pred ceEEEEecccChh--HH-HhhcCCCCeEeeCCCcCc---eeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHH
Q 012322 151 LKILITSATLDGE--KV-SKFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (466)
Q Consensus 151 ~~ii~~SAT~~~~--~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~ 224 (466)
.+++++|||++.+ .+ ..++.+...+.+..+... +...+.... . ......+..+.......++||||+++.
T Consensus 181 ~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~---~~k~~~l~~l~~~~~~~~~lVF~~t~~ 256 (456)
T PRK10590 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD-K---KRKRELLSQMIGKGNWQQVLVFTRTKH 256 (456)
T ss_pred CeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcC-H---HHHHHHHHHHHHcCCCCcEEEEcCcHH
Confidence 8999999999764 23 455555554544332211 111111111 1 111222223333344568999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccce
Q 012322 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (466)
Q Consensus 225 ~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~ 304 (466)
+++.+++.|.+. ++.+..+||+|++++|.++++.|++|+++|||||+++++|||+|+|++||++++|.
T Consensus 257 ~~~~l~~~L~~~----------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~-- 324 (456)
T PRK10590 257 GANHLAEQLNKD----------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPN-- 324 (456)
T ss_pred HHHHHHHHHHHC----------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCC--
Confidence 999999999775 78899999999999999999999999999999999999999999999999988876
Q ss_pred eecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchh
Q 012322 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (466)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (466)
+..+|+||+||+||. ..|.++.+++.++..
T Consensus 325 ----------------~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 325 ----------------VPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred ----------------CHHHhhhhccccccCCCCeeEEEEecHHHHH
Confidence 667999999999998 789999999877643
No 22
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.4e-42 Score=340.46 Aligned_cols=310 Identities=18% Similarity=0.178 Sum_probs=224.1
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhc-C--c-----CCCcEEEEeCchhHHHHHHHHHHHHH---hC
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-G--Y-----TKSGIIGVTQPRRVAAVSVARRVAQE---LG 74 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~-~--~-----~~~~~i~~~~p~~~l~~~~~~~~~~~---~~ 74 (466)
.+.|.+.+..+.+|++++++|||||||| +++.+++... . . ..+.+++++.|+++++.|+.+.+... .+
T Consensus 32 t~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~ 111 (423)
T PRK04837 32 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATG 111 (423)
T ss_pred CHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCC
Confidence 4789999999999999999999999999 3333332211 1 1 12458999999999999998765433 33
Q ss_pred CccCCeeeeeEeec--cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh--c
Q 012322 75 VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA--S 149 (466)
Q Consensus 75 ~~~~~~~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~--~ 149 (466)
..+....|...... .......+|+++||+.+.+.+.... .+.+++++|+|||| +.++.++... ++.+....+ .
T Consensus 112 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~~f~~~-i~~i~~~~~~~~ 189 (423)
T PRK04837 112 LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDLGFIKD-IRWLFRRMPPAN 189 (423)
T ss_pred ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HHhhcccHHH-HHHHHHhCCCcc
Confidence 33332232110000 1123457999999999998886543 68899999999999 5666666555 455655554 2
Q ss_pred CceEEEEecccChhH---HHhhcCCCCeEeeCCCcCc---eeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCH
Q 012322 150 KLKILITSATLDGEK---VSKFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ 223 (466)
Q Consensus 150 ~~~ii~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~ 223 (466)
..+.+++|||++... ...++.++..+.+...... +...+.... .......+..+......+++||||+++
T Consensus 190 ~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~----~~~k~~~l~~ll~~~~~~~~lVF~~t~ 265 (423)
T PRK04837 190 QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPS----NEEKMRLLQTLIEEEWPDRAIIFANTK 265 (423)
T ss_pred ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCC----HHHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 456789999997643 3355555555544332211 111111111 122333334444444567999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccc
Q 012322 224 DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (466)
Q Consensus 224 ~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~ 303 (466)
..|+.+++.|... ++.+..+||+|++++|.++++.|++|+++|||||+++++|||+|+|++||++++|.
T Consensus 266 ~~~~~l~~~L~~~----------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~- 334 (423)
T PRK04837 266 HRCEEIWGHLAAD----------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPD- 334 (423)
T ss_pred HHHHHHHHHHHhC----------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCC-
Confidence 9999999999875 78899999999999999999999999999999999999999999999999988876
Q ss_pred eeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchh
Q 012322 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (466)
Q Consensus 304 ~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (466)
+..+|+||+||+||. +.|.++.++++++..
T Consensus 335 -----------------s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~ 365 (423)
T PRK04837 335 -----------------DCEDYVHRIGRTGRAGASGHSISLACEEYAL 365 (423)
T ss_pred -----------------chhheEeccccccCCCCCeeEEEEeCHHHHH
Confidence 666899999999999 789999999887543
No 23
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-42 Score=344.51 Aligned_cols=309 Identities=21% Similarity=0.287 Sum_probs=239.5
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcC--cCCCcE-EEEeCchhHHHHHHHHHHHHHh----CCcc
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--YTKSGI-IGVTQPRRVAAVSVARRVAQEL----GVRL 77 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~--~~~~~~-i~~~~p~~~l~~~~~~~~~~~~----~~~~ 77 (466)
..+.|...+..+..|+++++.|+|||||| .++.+++.... ...... .+++.|+|+++.|+++.+.+.. +..+
T Consensus 52 pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~ 131 (513)
T COG0513 52 PTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRV 131 (513)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccE
Confidence 35688999999999999999999999999 44444444443 222222 8999999999999988765433 2333
Q ss_pred CCeeeeeEeec--cccCccceEEEcCHHHHHHHHhhC-CCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEE
Q 012322 78 GEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (466)
Q Consensus 78 ~~~~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~-~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (466)
...+|...... .......+|+++|||+++.++... ..+.++.++|+|||+ ++++++|... +..+....+.+.+++
T Consensus 132 ~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~-i~~I~~~~p~~~qtl 209 (513)
T COG0513 132 AVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDD-IEKILKALPPDRQTL 209 (513)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHH-HHHHHHhCCcccEEE
Confidence 33333211111 111235999999999999998666 489999999999999 8999988877 788888887789999
Q ss_pred EEecccChhH---HHhhcCCCCeEeeCCCc-----CceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHH
Q 012322 155 ITSATLDGEK---VSKFFSNCPTLNVPGKL-----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (466)
Q Consensus 155 ~~SAT~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~ 226 (466)
++|||++... ...++.++..+.+.... ..++..+......+ ..+..+..+......+++||||+|+..+
T Consensus 210 lfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~ 286 (513)
T COG0513 210 LFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLV 286 (513)
T ss_pred EEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHH
Confidence 9999998742 34666666666665222 22233333222212 3555556666556666899999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceee
Q 012322 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (466)
Q Consensus 227 ~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~ 306 (466)
+.++..|... ++.+..+||+|++++|.++++.|++|+.+||||||++++|||||+|.+||||++|.
T Consensus 287 ~~l~~~l~~~----------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~---- 352 (513)
T COG0513 287 EELAESLRKR----------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPL---- 352 (513)
T ss_pred HHHHHHHHHC----------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCC----
Confidence 9999999887 89999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCcc
Q 012322 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (466)
Q Consensus 307 ~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 347 (466)
+...|+||+||+||. ..|.++.++++.
T Consensus 353 --------------~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 353 --------------DPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred --------------CHHHheeccCccccCCCCCeEEEEeCcH
Confidence 666999999999999 799999999864
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=8.7e-42 Score=346.18 Aligned_cols=311 Identities=17% Similarity=0.149 Sum_probs=222.4
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcC-------cCCCcEEEEeCchhHHHHHHHHHHHHHhC---
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG-------YTKSGIIGVTQPRRVAAVSVARRVAQELG--- 74 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~-------~~~~~~i~~~~p~~~l~~~~~~~~~~~~~--- 74 (466)
.++|.+.+..+.+|++++++|||||||| +++|.+..... ...+.+++++.|+++++.|+.+.+.....
T Consensus 145 tpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~ 224 (518)
T PLN00206 145 TPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLP 224 (518)
T ss_pred CHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC
Confidence 5689999999999999999999999999 45554433221 12456899999999999998776644322
Q ss_pred CccCCeeeeeEeec--cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCc
Q 012322 75 VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (466)
Q Consensus 75 ~~~~~~~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~ 151 (466)
.......|...... .......+|+++|||.+...+.... .+.++++||+|||| +.++.++... +..+....+ +.
T Consensus 225 ~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~~-i~~i~~~l~-~~ 301 (518)
T PLN00206 225 FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRDQ-VMQIFQALS-QP 301 (518)
T ss_pred ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHHH-HHHHHHhCC-CC
Confidence 12111222111111 1123457999999999988885543 78999999999999 5666666544 455555555 78
Q ss_pred eEEEEecccChh--HHHhhcC-CCCeEeeCCCcCc---eeeeecCCCCCchHHHHHHHHHHHhhc--CCCCCEEEecCCH
Q 012322 152 KILITSATLDGE--KVSKFFS-NCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVR--EPEGDVLIFMTGQ 223 (466)
Q Consensus 152 ~ii~~SAT~~~~--~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lVF~~t~ 223 (466)
+++++|||++.+ .+...+. +...+.+.....+ +..........+ ....+..+... ...+++||||+++
T Consensus 302 q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~----k~~~l~~~l~~~~~~~~~~iVFv~s~ 377 (518)
T PLN00206 302 QVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQ----KKQKLFDILKSKQHFKPPAVVFVSSR 377 (518)
T ss_pred cEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchh----HHHHHHHHHHhhcccCCCEEEEcCCc
Confidence 999999999764 3444443 3333443322211 111111111111 11222222221 2246899999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccc
Q 012322 224 DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (466)
Q Consensus 224 ~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~ 303 (466)
..++.+++.|... .++.+..+||+++.++|..+++.|++|+.+|||||+++++|||+|+|++||++|+|.
T Consensus 378 ~~a~~l~~~L~~~---------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~- 447 (518)
T PLN00206 378 LGADLLANAITVV---------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPN- 447 (518)
T ss_pred hhHHHHHHHHhhc---------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCC-
Confidence 9999999998764 377899999999999999999999999999999999999999999999999988765
Q ss_pred eeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 304 ~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
+..+|+||+|||||. .+|.++.++++++...
T Consensus 448 -----------------s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~ 479 (518)
T PLN00206 448 -----------------TIKEYIHQIGRASRMGEKGTAIVFVNEEDRNL 479 (518)
T ss_pred -----------------CHHHHHHhccccccCCCCeEEEEEEchhHHHH
Confidence 777999999999999 6899999998877544
No 25
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.8e-41 Score=347.58 Aligned_cols=310 Identities=19% Similarity=0.213 Sum_probs=230.8
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcC-cCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
.+++|.+++..+.++++++++|||||||| +++.+++.... ...+.++++++|+++++.|+++.+.+..+...+..+..
T Consensus 29 ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~ 108 (629)
T PRK11634 29 PSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVA 108 (629)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 46789999999999999999999999999 33333333322 22345899999999999999888765543222222211
Q ss_pred eE---eecc---ccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEE
Q 012322 84 AI---RFED---RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (466)
Q Consensus 84 ~~---~~~~---~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~ 156 (466)
.. ..+. ......+|+++||+.+..++.... .+.++++||+|||| ..++..+... +..++...+...+++++
T Consensus 109 ~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd-~ml~~gf~~d-i~~Il~~lp~~~q~llf 186 (629)
T PRK11634 109 LYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD-EMLRMGFIED-VETIMAQIPEGHQTALF 186 (629)
T ss_pred EECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH-HHhhcccHHH-HHHHHHhCCCCCeEEEE
Confidence 11 1111 123468999999999998886554 68899999999999 4566666555 56666666778899999
Q ss_pred ecccChhH---HHhhcCCCCeEeeCCCcC---ceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHH
Q 012322 157 SATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (466)
Q Consensus 157 SAT~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~ 230 (466)
|||++... ...|+.++..+.+..... .+...|..... ......+..+.......++||||+|+..++.++
T Consensus 187 SAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~----~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~ 262 (629)
T PRK11634 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG----MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVA 262 (629)
T ss_pred EccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech----hhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHH
Confidence 99997643 456676666655543321 11122211111 122333344444455678999999999999999
Q ss_pred HHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCC
Q 012322 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (466)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~ 310 (466)
+.|.+. ++.+..+||+|++++|.++++.|++|+++|||||+++++|||+|+|++||++++|.
T Consensus 263 ~~L~~~----------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~-------- 324 (629)
T PRK11634 263 EALERN----------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPM-------- 324 (629)
T ss_pred HHHHhC----------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCC--------
Confidence 999876 78899999999999999999999999999999999999999999999999988765
Q ss_pred CccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 311 ~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
+..+|+||+||+||. +.|.++.++++.+.
T Consensus 325 ----------~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 325 ----------DSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred ----------CHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 677999999999999 67999999987654
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1e-41 Score=340.98 Aligned_cols=313 Identities=19% Similarity=0.205 Sum_probs=226.8
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhc-C----cCCCcEEEEeCchhHHHHHHHHHHHHH---hCCc
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-G----YTKSGIIGVTQPRRVAAVSVARRVAQE---LGVR 76 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~-~----~~~~~~i~~~~p~~~l~~~~~~~~~~~---~~~~ 76 (466)
.+.+|.+.+..+.+|++++++|||||||| +++.+++... . ..+..+++++.|+++++.|+++.+... .+..
T Consensus 24 p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~ 103 (434)
T PRK11192 24 PTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLD 103 (434)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcE
Confidence 46789999999999999999999999999 3333333221 1 122458999999999999988876543 3333
Q ss_pred cCCeeeeeEee--ccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceE
Q 012322 77 LGEEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (466)
Q Consensus 77 ~~~~~g~~~~~--~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~i 153 (466)
++...|..... ......+.+|+++|||++...+.... .+.++++||+|||| +.++..+... +..+....+...++
T Consensus 104 v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~-~~~i~~~~~~~~q~ 181 (434)
T PRK11192 104 IATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQD-IETIAAETRWRKQT 181 (434)
T ss_pred EEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHH-HHHHHHhCccccEE
Confidence 33333311111 11123467899999999998886655 57899999999999 6666665444 55665555557899
Q ss_pred EEEecccChhH---HHhhc-CCCCeEeeCCCcC---ceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHH
Q 012322 154 LITSATLDGEK---VSKFF-SNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (466)
Q Consensus 154 i~~SAT~~~~~---~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~ 226 (466)
+++|||++... +..++ .+...+....... .+...+... +........+..+......+++||||++++++
T Consensus 182 ~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~---~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~ 258 (434)
T PRK11192 182 LLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRA---DDLEHKTALLCHLLKQPEVTRSIVFVRTRERV 258 (434)
T ss_pred EEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEe---CCHHHHHHHHHHHHhcCCCCeEEEEeCChHHH
Confidence 99999997543 33333 3333333322111 111111111 11223333444444444567999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceee
Q 012322 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (466)
Q Consensus 227 ~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~ 306 (466)
+.+++.|... ++.+..+||+|++++|..+++.|++|+++|||||+++++|||+|++++||++++|.
T Consensus 259 ~~l~~~L~~~----------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~---- 324 (434)
T PRK11192 259 HELAGWLRKA----------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPR---- 324 (434)
T ss_pred HHHHHHHHhC----------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCC----
Confidence 9999999875 78899999999999999999999999999999999999999999999999988765
Q ss_pred cCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 307 ~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
|...|+||+||+||. ..|.++.+++..++..
T Consensus 325 --------------s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 325 --------------SADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred --------------CHHHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 677999999999998 7899999998777644
No 27
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-41 Score=344.05 Aligned_cols=309 Identities=17% Similarity=0.213 Sum_probs=225.2
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcC--------cCCCcEEEEeCchhHHHHHHHHHHHHHh---
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--------YTKSGIIGVTQPRRVAAVSVARRVAQEL--- 73 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~--------~~~~~~i~~~~p~~~l~~~~~~~~~~~~--- 73 (466)
..+.|.+.+..+.+|++++++|||||||| +++..++.... ...+.+++++.|+++++.|+++.+.+..
T Consensus 32 ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~ 111 (572)
T PRK04537 32 CTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL 111 (572)
T ss_pred CCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 35789999999999999999999999999 43333333221 1123589999999999999988765432
Q ss_pred CCccCCeeeeeEeecc---ccCccceEEEcCHHHHHHHHhhC--CCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 74 GVRLGEEVGYAIRFED---RTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 74 ~~~~~~~~g~~~~~~~---~~~~~~~i~~~T~g~l~~~~~~~--~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
++.+....|.. ..+. ......+|+++||+.+.+.+... ..+.++++||||||| ..++.++... +..++...+
T Consensus 112 ~i~v~~l~Gg~-~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh-~lld~gf~~~-i~~il~~lp 188 (572)
T PRK04537 112 GLRFALVYGGV-DYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-RMFDLGFIKD-IRFLLRRMP 188 (572)
T ss_pred CceEEEEECCC-CHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH-HHhhcchHHH-HHHHHHhcc
Confidence 22222222211 1111 12345789999999999888654 357889999999999 5666666554 455555554
Q ss_pred c--CceEEEEecccChhH---HHhhcCCCCeEeeCCCcCc---eeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEec
Q 012322 149 S--KLKILITSATLDGEK---VSKFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFM 220 (466)
Q Consensus 149 ~--~~~ii~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~ 220 (466)
. +.+++++|||++... ...++.+...+.+...... +...+.... .......+..++......++||||
T Consensus 189 ~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~----~~~k~~~L~~ll~~~~~~k~LVF~ 264 (572)
T PRK04537 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA----DEEKQTLLLGLLSRSEGARTMVFV 264 (572)
T ss_pred cccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC----HHHHHHHHHHHHhcccCCcEEEEe
Confidence 3 678999999997643 3455555444433322211 111111111 122333444444455567999999
Q ss_pred CCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCc
Q 012322 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (466)
Q Consensus 221 ~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~ 300 (466)
+|++.++.+++.|.+. ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||++++
T Consensus 265 nt~~~ae~l~~~L~~~----------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~ 334 (572)
T PRK04537 265 NTKAFVERVARTLERH----------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDL 334 (572)
T ss_pred CCHHHHHHHHHHHHHc----------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCC
Confidence 9999999999999875 788999999999999999999999999999999999999999999999999887
Q ss_pred ccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
|. +..+|+||+||+||. ..|.|+.++++.+.
T Consensus 335 P~------------------s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 335 PF------------------DAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred CC------------------CHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 65 777999999999999 78999999987654
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.3e-41 Score=339.43 Aligned_cols=310 Identities=18% Similarity=0.221 Sum_probs=223.1
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCc-------CCCcEEEEeCchhHHHHHHHHHHHHHh---
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY-------TKSGIIGVTQPRRVAAVSVARRVAQEL--- 73 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~-------~~~~~i~~~~p~~~l~~~~~~~~~~~~--- 73 (466)
.+++|.+.+..+.+|+++++++||||||| ++++.+...... .+..+++++.|+++++.|+.+.+....
T Consensus 110 ~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~ 189 (475)
T PRK01297 110 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT 189 (475)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccC
Confidence 47899999999999999999999999999 333433222111 114589999999999999988775543
Q ss_pred CCccCCeeeeeEee---ccccCccceEEEcCHHHHHHHHhhC-CCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-
Q 012322 74 GVRLGEEVGYAIRF---EDRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA- 148 (466)
Q Consensus 74 ~~~~~~~~g~~~~~---~~~~~~~~~i~~~T~g~l~~~~~~~-~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~- 148 (466)
+..+....|..... ........+|+++||++++...... ..+.++++|||||+| ...+.++... ++.++...+
T Consensus 190 ~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah-~l~~~~~~~~-l~~i~~~~~~ 267 (475)
T PRK01297 190 GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD-RMLDMGFIPQ-VRQIIRQTPR 267 (475)
T ss_pred CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH-HHHhcccHHH-HHHHHHhCCC
Confidence 22222222211000 1112345799999999998876543 378999999999999 4555555443 555555543
Q ss_pred -cCceEEEEecccChhH---HHhhcCCCCeEeeCCCcCc---eeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecC
Q 012322 149 -SKLKILITSATLDGEK---VSKFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMT 221 (466)
Q Consensus 149 -~~~~ii~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~ 221 (466)
.+.+++++|||++.+. ...|..+...+.+...... +...+...... .....+.........+++||||+
T Consensus 268 ~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~k~~~l~~ll~~~~~~~~IVF~~ 343 (475)
T PRK01297 268 KEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS----DKYKLLYNLVTQNPWERVMVFAN 343 (475)
T ss_pred CCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch----hHHHHHHHHHHhcCCCeEEEEeC
Confidence 2568999999996542 3455555544444332211 11111111111 12222333333445579999999
Q ss_pred CHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcc
Q 012322 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (466)
Q Consensus 222 t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~ 301 (466)
++++++.+++.|.+. ++.+..+||+++.++|.++++.|++|+++|||||+++++|||+|++++||++|+|
T Consensus 344 s~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P 413 (475)
T PRK01297 344 RKDEVRRIEERLVKD----------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLP 413 (475)
T ss_pred CHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCC
Confidence 999999999999765 6778899999999999999999999999999999999999999999999999987
Q ss_pred cceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
. |..+|+||+|||||. ..|.++.++++++.
T Consensus 414 ~------------------s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 414 E------------------DPDDYVHRIGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred C------------------CHHHHHHhhCccCCCCCCceEEEEecHHHH
Confidence 6 778999999999999 68999999987754
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.8e-41 Score=334.52 Aligned_cols=313 Identities=16% Similarity=0.198 Sum_probs=224.2
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcC-cCCCcEEEEeCchhHHHHHHHHHHHHHhC---CccCCe
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEE 80 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~---~~~~~~ 80 (466)
..+.|.+.+..+.++++++++||||||||.. +.+++.... ...+.+++++.|+++++.|+.+.+..... ......
T Consensus 51 ~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~ 130 (401)
T PTZ00424 51 PSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHAC 130 (401)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEE
Confidence 3678999999999999999999999999943 223333222 22456899999999999998876644332 222222
Q ss_pred eeeeEeec--cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 81 VGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 81 ~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
.|.....+ .......+|+++||+.+.+.+.... .+.++++||+||+| +..+.++... +..+....+.+.+++++|
T Consensus 131 ~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah-~~~~~~~~~~-~~~i~~~~~~~~~~i~~S 208 (401)
T PTZ00424 131 VGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD-EMLSRGFKGQ-IYDVFKKLPPDVQVALFS 208 (401)
T ss_pred ECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH-HHHhcchHHH-HHHHHhhCCCCcEEEEEE
Confidence 22111101 1112346899999999988876554 68899999999999 4444444333 445555555689999999
Q ss_pred cccChhH---HHhhcCCCCeEeeCCCcC---ceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHH
Q 012322 158 ATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (466)
Q Consensus 158 AT~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~ 231 (466)
||++.+. ...++.+...+.+..... .+...+......++. ...+..........++||||+|+++++.+++
T Consensus 209 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~ 285 (401)
T PTZ00424 209 ATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWK---FDTLCDLYETLTITQAIIYCNTRRKVDYLTK 285 (401)
T ss_pred ecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHH---HHHHHHHHHhcCCCeEEEEecCcHHHHHHHH
Confidence 9997643 234554443333332211 112222222222222 2333333334455789999999999999999
Q ss_pred HHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCC
Q 012322 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (466)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~ 311 (466)
.|.+. +..+..+||+|+.++|..+++.|++|+++|||||+++++|||+|++++||++|.|.
T Consensus 286 ~l~~~----------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~--------- 346 (401)
T PTZ00424 286 KMHER----------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA--------- 346 (401)
T ss_pred HHHHC----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC---------
Confidence 99775 67899999999999999999999999999999999999999999999999988755
Q ss_pred ccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 312 ~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
|..+|+||+||+||. ..|.|+.++++++...
T Consensus 347 ---------s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 347 ---------SPENYIHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred ---------CHHHEeecccccccCCCCceEEEEEcHHHHHH
Confidence 777999999999998 7899999998887654
No 30
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.9e-41 Score=349.79 Aligned_cols=306 Identities=19% Similarity=0.164 Sum_probs=214.5
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
..+.|.++++.+..|+++++++|||+||| +++|++.. ++.++++.|+++|+.++...+.. .++......+.
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L~s~ 533 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLLQ-ANIPAASLSAG 533 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHHh-CCCeEEEEECC
Confidence 35789999999999999999999999999 56666543 35789999999999877666543 34333222221
Q ss_pred eEeecc------c--cCccceEEEcCHHHHHH------HHhhCCCCCCCcEEEecCCCccc-cCHHHHHHH--HHHHHHh
Q 012322 84 AIRFED------R--TSERTLIKYLTDGVLLR------EILSNPDLSPYSVIILDEAHERS-LNTDILLGL--VKRLVNL 146 (466)
Q Consensus 84 ~~~~~~------~--~~~~~~i~~~T~g~l~~------~~~~~~~l~~~~~iIiDEah~~~-~~~~~~~~~--l~~i~~~ 146 (466)
....+. . .....+|+|+|||++.. .+........+++||||||||.. +..+|...+ +..+...
T Consensus 534 ~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~ 613 (1195)
T PLN03137 534 MEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK 613 (1195)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh
Confidence 110000 0 11467999999998752 11111133558999999999733 233443332 2234444
Q ss_pred hhcCceEEEEecccChhH---HHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhh-cCCCCCEEEecCC
Q 012322 147 RASKLKILITSATLDGEK---VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHV-REPEGDVLIFMTG 222 (466)
Q Consensus 147 ~~~~~~ii~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lVF~~t 222 (466)
.+ +.+++++|||++... +.+.++......+..........|........ ....+..... ....++.||||+|
T Consensus 614 fp-~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk---~le~L~~~I~~~~~~esgIIYC~S 689 (1195)
T PLN03137 614 FP-NIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKK---CLEDIDKFIKENHFDECGIIYCLS 689 (1195)
T ss_pred CC-CCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchh---HHHHHHHHHHhcccCCCceeEeCc
Confidence 44 788999999997743 44444432222222111111223322222211 1122222222 2234678999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCccc
Q 012322 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (466)
Q Consensus 223 ~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~ 302 (466)
+++++.+++.|.+. ++.+.+|||+|++++|..+++.|.+|+++|||||++++||||+|+|++|||+++|+
T Consensus 690 Rke~E~LAe~L~~~----------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPk 759 (1195)
T PLN03137 690 RMDCEKVAERLQEF----------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK 759 (1195)
T ss_pred hhHHHHHHHHHHHC----------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCC
Confidence 99999999999875 88899999999999999999999999999999999999999999999999999887
Q ss_pred ceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchh
Q 012322 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (466)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (466)
|.+.|+||+|||||. .+|.|+.+|+..++.
T Consensus 760 ------------------SiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 760 ------------------SIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred ------------------CHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 777999999999999 689999999887764
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.4e-40 Score=347.61 Aligned_cols=320 Identities=18% Similarity=0.156 Sum_probs=218.0
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHh--CCccCCee
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGEEV 81 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~--~~~~~~~~ 81 (466)
..+++|.+.++.+.+|+++++++||||||| .++.+++.......+.+++++.|+++|+.|+.+.+.+.. +..+....
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~ 115 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYD 115 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEe
Confidence 367899999999999999999999999999 333333333323345689999999999999999886653 12221122
Q ss_pred eeeEeec-cccCccceEEEcCHHHHHHHHhhC-----CCCCCCcEEEecCCCccccC--HHHHHHHHHHH---HHhhhcC
Q 012322 82 GYAIRFE-DRTSERTLIKYLTDGVLLREILSN-----PDLSPYSVIILDEAHERSLN--TDILLGLVKRL---VNLRASK 150 (466)
Q Consensus 82 g~~~~~~-~~~~~~~~i~~~T~g~l~~~~~~~-----~~l~~~~~iIiDEah~~~~~--~~~~~~~l~~i---~~~~~~~ 150 (466)
|.....+ .....+.+|+++||+++...++.. ..+.++++|||||+|. ..+ ...+..+++++ ....+.+
T Consensus 116 Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~-~~g~fg~~~~~il~rL~ri~~~~g~~ 194 (742)
T TIGR03817 116 GDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS-YRGVFGSHVALVLRRLRRLCARYGAS 194 (742)
T ss_pred CCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh-ccCccHHHHHHHHHHHHHHHHhcCCC
Confidence 2111111 112345799999999987544321 2478999999999995 322 11222233333 3333457
Q ss_pred ceEEEEecccCh-hHHHhhcCCCCeEeeCCCcCc---eeeee-cCCC-----------CCchHHHHHHHHHHHhhcCCCC
Q 012322 151 LKILITSATLDG-EKVSKFFSNCPTLNVPGKLYP---VEILH-SKER-----------PTSYLESALKTAIDIHVREPEG 214 (466)
Q Consensus 151 ~~ii~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 214 (466)
.|++++|||++. ..+.+++.+.+...+.....+ ....+ .+.. ...........+..... .+.
T Consensus 195 ~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~ 272 (742)
T TIGR03817 195 PVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGA 272 (742)
T ss_pred CEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCC
Confidence 899999999944 444444333344333322111 11111 1110 00111122222222222 357
Q ss_pred CEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEE
Q 012322 215 DVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVY 294 (466)
Q Consensus 215 ~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~ 294 (466)
++||||+|++.++.++..|++.+..... ..+..+..|||++++++|.+++++|++|++++|||||++|+|||+|++++
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~--~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~ 350 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDP--DLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDA 350 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcc--ccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccE
Confidence 9999999999999999999876433211 12467889999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCcc
Q 012322 295 VIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (466)
Q Consensus 295 VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 347 (466)
||++|+|. +.++|+||+|||||. +.|.++.+.+.+
T Consensus 351 VI~~~~P~------------------s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 351 VVIAGFPG------------------TRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred EEEeCCCC------------------CHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 99999876 777999999999999 679999888644
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-40 Score=334.79 Aligned_cols=304 Identities=17% Similarity=0.148 Sum_probs=213.9
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeee
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~ 84 (466)
.+.|.++++.+.+|+++++++||||||| +++|.+.. ++..+++.|+++++.|+...+.. .+.......+..
T Consensus 13 r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~-~gi~~~~l~~~~ 85 (470)
T TIGR00614 13 RPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKA-SGIPATFLNSSQ 85 (470)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHH-cCCcEEEEeCCC
Confidence 5789999999999999999999999999 45554432 45688899999999999888753 444332222211
Q ss_pred Eee------ccccCccceEEEcCHHHHHHHH--hhCC-CCCCCcEEEecCCCcccc-CHHHHHH--HHHHHHHhhhcCce
Q 012322 85 IRF------EDRTSERTLIKYLTDGVLLREI--LSNP-DLSPYSVIILDEAHERSL-NTDILLG--LVKRLVNLRASKLK 152 (466)
Q Consensus 85 ~~~------~~~~~~~~~i~~~T~g~l~~~~--~~~~-~l~~~~~iIiDEah~~~~-~~~~~~~--~l~~i~~~~~~~~~ 152 (466)
... ........+++++||+.+.... .... ...++++|||||||+..- ..++... .+..+....+ +.+
T Consensus 86 ~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ 164 (470)
T TIGR00614 86 SKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFP-NVP 164 (470)
T ss_pred CHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcC-CCc
Confidence 100 0112345789999999865321 1111 467899999999996332 2233222 1333444454 889
Q ss_pred EEEEecccChhH---HHhhcC--CCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhh-cCCCCCEEEecCCHHHH
Q 012322 153 ILITSATLDGEK---VSKFFS--NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHV-REPEGDVLIFMTGQDDI 226 (466)
Q Consensus 153 ii~~SAT~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lVF~~t~~~~ 226 (466)
++++|||++... +.++++ ++.++........+....... ..+. ...+..... ..++..+||||+|++++
T Consensus 165 ~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~-~~~~----~~~l~~~l~~~~~~~~~IIF~~s~~~~ 239 (470)
T TIGR00614 165 IMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRK-TPKI----LEDLLRFIRKEFKGKSGIIYCPSRKKS 239 (470)
T ss_pred eEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeC-CccH----HHHHHHHHHHhcCCCceEEEECcHHHH
Confidence 999999998753 344443 222222221111111111111 1122 222333332 23345669999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceee
Q 012322 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (466)
Q Consensus 227 ~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~ 306 (466)
+.+++.|.+. ++.+..+||+|++++|.++++.|++|+++|||||+++++|||+|+|++||+++.|+
T Consensus 240 e~la~~L~~~----------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~---- 305 (470)
T TIGR00614 240 EQVTASLQNL----------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK---- 305 (470)
T ss_pred HHHHHHHHhc----------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC----
Confidence 9999999875 78899999999999999999999999999999999999999999999999999876
Q ss_pred cCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 307 ~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
|.++|+||+|||||. .+|.|+.+|+..+...
T Consensus 306 --------------s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 306 --------------SMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred --------------CHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 777999999999999 6899999999887643
No 33
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.7e-40 Score=314.94 Aligned_cols=419 Identities=19% Similarity=0.181 Sum_probs=298.1
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHh---CCccCCeeeeeEee--
Q 012322 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGEEVGYAIRF-- 87 (466)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~---~~~~~~~~g~~~~~-- 87 (466)
+-.-+.+|++.+|+++|+||||......-......++++.++++|..++++|.+..+.+.+ +..+...+|....-
T Consensus 225 Ve~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~ 304 (830)
T COG1202 225 VEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTR 304 (830)
T ss_pred hhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhccc
Confidence 4456789999999999999998554433222233457899999999999999999886554 44554555532111
Q ss_pred ----ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccC---HHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 88 ----EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLN---TDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 88 ----~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~---~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
......+.+|++.|++-+..++.....+.+++.+||||+|. .-+ ...+..++.++....+ +.|+|.+|||+
T Consensus 305 ~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHt-L~deERG~RLdGLI~RLr~l~~-~AQ~i~LSATV 382 (830)
T COG1202 305 EEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHT-LEDEERGPRLDGLIGRLRYLFP-GAQFIYLSATV 382 (830)
T ss_pred CCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeee-ccchhcccchhhHHHHHHHhCC-CCeEEEEEeec
Confidence 12234679999999999888888888999999999999994 222 1236667778777777 99999999999
Q ss_pred -ChhHHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHH-----hhcCCCCCEEEecCCHHHHHHHHHHHH
Q 012322 161 -DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDI-----HVREPEGDVLIFMTGQDDIEKLVSKLE 234 (466)
Q Consensus 161 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~lVF~~t~~~~~~l~~~L~ 234 (466)
|++.+++.+ +...+..+.++.|++.+..-..........+..+... ....-.|++|||.+|++.|+.++..|.
T Consensus 383 gNp~elA~~l-~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~ 461 (830)
T COG1202 383 GNPEELAKKL-GAKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALT 461 (830)
T ss_pred CChHHHHHHh-CCeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhh
Confidence 888899998 5667778888888876544332222222222222221 122336899999999999999999998
Q ss_pred HhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccc
Q 012322 235 DKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYS 314 (466)
Q Consensus 235 ~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~ 314 (466)
.+ ++.+.+||+||+..+|+.++..|.++.+.++|+|.+++.|||+|+-.+|+.+ ..
T Consensus 462 ~k----------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs--------------La 517 (830)
T COG1202 462 GK----------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES--------------LA 517 (830)
T ss_pred cC----------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH--------------HH
Confidence 76 8999999999999999999999999999999999999999999976666642 34
Q ss_pred cceeeecHHHHHHhccccCCC---CCCeEEEecCccchhh-hCCC------------CCCCccccC----CchHHHHHHH
Q 012322 315 LDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTVYHD-EFLD------------VTVPEIQRS----SLAGSVLYLK 374 (466)
Q Consensus 315 ~~~~~~s~~~~~Qr~GRaGR~---~~G~~~~l~~~~~~~~-~~~~------------~~~p~i~~~----~l~~~~l~l~ 374 (466)
|...|.|..+|.||.|||||. ..|++|.+.......+ .|.+ ...|-+.+- ..++ +|.
T Consensus 518 MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~-vLA-- 594 (830)
T COG1202 518 MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEEN-VLA-- 594 (830)
T ss_pred cccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHH-HHH--
Confidence 567899999999999999998 6799999986553322 1211 111111111 1122 222
Q ss_pred hCCCCCC--cccccc--CCCCCCHHHHHHHHHHHHHcccccCCC---CCCHHHHHHccCCCCHHHHHHHHHhhhhCCHHH
Q 012322 375 SLDLSDI--NVLKFD--FLDPPSSESLEDALKQLYLIDAIDENG---SITSIGRTMAELPLEPSLSRMLMEANEFGCLSQ 447 (466)
Q Consensus 375 ~~~~~~~--~~~~~~--~~~~p~~~~~~~~l~~L~~~~~l~~~~---~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (466)
..+..+. .+.... .+- ..-..+.++..|++.|+|+.+| ++|+.|++++..-+.|..|..|..++ ....+|
T Consensus 595 ~~~v~~s~~~i~~v~~~~~g--~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v-~~~~~p 671 (830)
T COG1202 595 SAGVTNSLSVIERVNSLMLG--AAFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREGV-LASMDP 671 (830)
T ss_pred HhhhcCcHHHHhhcChhhcc--ccCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHHhh-hccCCh
Confidence 2222110 000110 000 0122468899999999999886 69999999999999999999999886 444456
Q ss_pred HHHHhhhhcCCCcccCC
Q 012322 448 ALTVAAMLSAETTLLPG 464 (466)
Q Consensus 448 ~~~i~~~~~~~~~f~~~ 464 (466)
.-+++.+....+.++.|
T Consensus 672 l~i~~~l~pfE~ayls~ 688 (830)
T COG1202 672 LRIAAELEPFENAYLSG 688 (830)
T ss_pred HhHhhccccccccccCh
Confidence 55565555555555543
No 34
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.2e-40 Score=340.19 Aligned_cols=420 Identities=21% Similarity=0.253 Sum_probs=278.9
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHH--HHhCCccCCeeeeeE
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA--QELGVRLGEEVGYAI 85 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~--~~~~~~~~~~~g~~~ 85 (466)
++|..+...+.+++|++|++|||||||.++...+......++.++++++|+++++.+.++++. +.+|.+++...|..
T Consensus 35 ~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~- 113 (766)
T COG1204 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDY- 113 (766)
T ss_pred HHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCc-
Confidence 455566666777899999999999999766666665554456799999999999999999997 66777777666622
Q ss_pred eeccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccC-HH-HHHHHHHHHHHhhhcCceEEEEeccc-C
Q 012322 86 RFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TD-ILLGLVKRLVNLRASKLKILITSATL-D 161 (466)
Q Consensus 86 ~~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~-~~-~~~~~l~~i~~~~~~~~~ii~~SAT~-~ 161 (466)
........+++|+++|++.+.....+.+ ++.+++++||||+|.-.-+ .+ .+..++.+...... ..+++++|||+ |
T Consensus 114 ~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~-~~rivgLSATlpN 192 (766)
T COG1204 114 DLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE-LIRIVGLSATLPN 192 (766)
T ss_pred ccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc-ceEEEEEeeecCC
Confidence 2222334679999999999998887766 7889999999999952222 22 24444445544443 58999999999 5
Q ss_pred hhHHHhhcCCCCeEeeCCCc--------CceeeeecCCCC----CchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHH
Q 012322 162 GEKVSKFFSNCPTLNVPGKL--------YPVEILHSKERP----TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (466)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l 229 (466)
.+.+++|++.... ...-+. +........... ..........+...+ ..++++||||+|++.+...
T Consensus 193 ~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~ 269 (766)
T COG1204 193 AEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKT 269 (766)
T ss_pred HHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHH
Confidence 5789999976544 211111 111122111111 111222233333322 4578999999999999999
Q ss_pred HHHHHHhhhhccC--------------C-------------CCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecc
Q 012322 230 VSKLEDKIRSLDE--------------G-------------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI 282 (466)
Q Consensus 230 ~~~L~~~~~~~~~--------------~-------------~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~ 282 (466)
+..|+..+..... . .+...++++||+||+.++|..+++.|++|+++|||||++
T Consensus 270 A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpT 349 (766)
T COG1204 270 AKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPT 349 (766)
T ss_pred HHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechH
Confidence 9999853321100 0 112346899999999999999999999999999999999
Q ss_pred cccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC---CCCeEEEec-Cccchhh--hCCCC
Q 012322 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLY-PSTVYHD--EFLDV 356 (466)
Q Consensus 283 ~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~---~~G~~~~l~-~~~~~~~--~~~~~ 356 (466)
++.|||+|.-++||. ....|++..| ...++..++.||+|||||. .-|..+.+. +.++.+. .....
T Consensus 350 LA~GVNLPA~~VIIk----~~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~ 420 (766)
T COG1204 350 LAAGVNLPARTVIIK----DTRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQ 420 (766)
T ss_pred HhhhcCCcceEEEEe----eeEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhc
Confidence 999999997777774 4556777444 3567999999999999998 346666555 2222221 12223
Q ss_pred CCCccccCCc------hHHHHHHHhCCCCCCccccc-c-----CCCC------CCHHHHHHHHHHHHHcc-cccCCC---
Q 012322 357 TVPEIQRSSL------AGSVLYLKSLDLSDINVLKF-D-----FLDP------PSSESLEDALKQLYLID-AIDENG--- 414 (466)
Q Consensus 357 ~~p~i~~~~l------~~~~l~l~~~~~~~~~~~~~-~-----~~~~------p~~~~~~~~l~~L~~~~-~l~~~~--- 414 (466)
..|+...+.+ ...++.+.+.+-.- ..... . |..| -....+..++..|.+.+ .++...
T Consensus 421 ~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v-~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~ 499 (766)
T COG1204 421 SEPEPIESKLGDELNLRTFLLGVISVGDAV-SWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEAL 499 (766)
T ss_pred cCcchHHHhhcccccchheEEEEEeccchh-hHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeecccccc
Confidence 3343321111 11111111111000 00000 0 0111 23456778899999986 555433
Q ss_pred CCCHHHHHHccCCCCHHHHHHHHHhhhh
Q 012322 415 SITSIGRTMAELPLEPSLSRMLMEANEF 442 (466)
Q Consensus 415 ~~T~lG~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
..|++|+.+++++++|..++.+......
T Consensus 500 ~ate~g~~~s~~yi~~~sa~~~~~~l~~ 527 (766)
T COG1204 500 HATELGKLVSRLYIDPESAKIFRDLLAE 527 (766)
T ss_pred chhHHHHHhhhccCCHHHHHHHHHHHHH
Confidence 7899999999999999999998877653
No 35
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-40 Score=289.07 Aligned_cols=312 Identities=17% Similarity=0.226 Sum_probs=240.1
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcCcCCC-cEEEEeCchhHHHHHHHHHH---HHHhCCccCCee
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKS-GIIGVTQPRRVAAVSVARRV---AQELGVRLGEEV 81 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~~~~~-~~i~~~~p~~~l~~~~~~~~---~~~~~~~~~~~~ 81 (466)
++.|+..+..+.+|++++.++.+|+||| ++..-.+........ ..++++.|+|+++.|+.+.+ +...+..+....
T Consensus 51 S~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~haci 130 (400)
T KOG0328|consen 51 SAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACI 130 (400)
T ss_pred hHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEe
Confidence 4578888889999999999999999999 444444444433333 58999999999999987765 344555554444
Q ss_pred eeeEeec--cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEec
Q 012322 82 GYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (466)
Q Consensus 82 g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (466)
|.....+ .+.....+++..|||.....+..+. ....+.++|+|||++ .++.++-.. +-.+.+..|++.|++++||
T Consensus 131 gg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kgfk~Q-iydiyr~lp~~~Qvv~~SA 208 (400)
T KOG0328|consen 131 GGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKGFKEQ-IYDIYRYLPPGAQVVLVSA 208 (400)
T ss_pred cCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHhhHHHH-HHHHHHhCCCCceEEEEec
Confidence 4222112 1223568899999999999886554 678899999999994 566666555 5566677777999999999
Q ss_pred ccChhHH---HhhcCCCCeEeeCCCcCce---eeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHH
Q 012322 159 TLDGEKV---SKFFSNCPTLNVPGKLYPV---EILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (466)
Q Consensus 159 T~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~ 232 (466)
|++.+.+ .+|+.++..+.+.....+. +.+|......++.. +.+.+++..-.=.+.+|||||++.+..+.+.
T Consensus 209 Tlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKf---dtLcdLYd~LtItQavIFcnTk~kVdwLtek 285 (400)
T KOG0328|consen 209 TLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKF---DTLCDLYDTLTITQAVIFCNTKRKVDWLTEK 285 (400)
T ss_pred cCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhH---hHHHHHhhhhehheEEEEecccchhhHHHHH
Confidence 9998653 4677777666665544443 34455444445433 3344444333345899999999999999999
Q ss_pred HHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCc
Q 012322 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (466)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~ 312 (466)
+++. .+.|...||+|++++|.++++.|+.|+.+|+++||+.++|+|+|.|..||||++|.
T Consensus 286 m~~~----------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~---------- 345 (400)
T KOG0328|consen 286 MREA----------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPN---------- 345 (400)
T ss_pred HHhh----------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCc----------
Confidence 9886 78899999999999999999999999999999999999999999999999999887
Q ss_pred cccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 313 ~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
..+.|+||+||.||. +.|.++.+...++...
T Consensus 346 --------nre~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 346 --------NRELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred --------cHHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 456999999999999 8999999998887654
No 36
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.2e-40 Score=311.00 Aligned_cols=311 Identities=20% Similarity=0.245 Sum_probs=238.8
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhc---------CcCCCcEEEEeCchhHHHHHHHHH---HHHHh
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRH---------GYTKSGIIGVTQPRRVAAVSVARR---VAQEL 73 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~---------~~~~~~~i~~~~p~~~l~~~~~~~---~~~~~ 73 (466)
+.|...+....++++++.++.|||||| .++|++.... ....|...+++.|+|.+++|+... +.+.+
T Consensus 270 pIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l 349 (673)
T KOG0333|consen 270 PIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL 349 (673)
T ss_pred hHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccc
Confidence 445566667788899999999999999 4445444432 123467899999999999998775 45556
Q ss_pred CCccCCeeeeeEeecc--ccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh--
Q 012322 74 GVRLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-- 148 (466)
Q Consensus 74 ~~~~~~~~g~~~~~~~--~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-- 148 (466)
++.+...+|.....+. +.+..++|+++|||.|...+-+.- .+.++.++|+|||+ ++.|++|-..+.+.+ ...|
T Consensus 350 g~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL-~~mPss 427 (673)
T KOG0333|consen 350 GIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKIL-EQMPSS 427 (673)
T ss_pred cceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHH-HhCCcc
Confidence 6666666664333333 456789999999999998885544 68899999999999 899998877744433 3222
Q ss_pred ---------------------cC--ceEEEEecccChh---HHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHH
Q 012322 149 ---------------------SK--LKILITSATLDGE---KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALK 202 (466)
Q Consensus 149 ---------------------~~--~~ii~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (466)
.+ .+.+++|||+++. ....||.++.++.+.....+....-+...... .+..+.
T Consensus 428 n~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~-ed~k~k 506 (673)
T KOG0333|consen 428 NAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVS-EDEKRK 506 (673)
T ss_pred ccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEec-chHHHH
Confidence 01 5789999999874 35688988888777653333221111100000 122355
Q ss_pred HHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecc
Q 012322 203 TAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI 282 (466)
Q Consensus 203 ~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~ 282 (466)
.++.+.......++|||+|+++.|+.+++.|.+. ++.+..+||+-++++|..+++.|+.|...|+||||+
T Consensus 507 kL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~----------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv 576 (673)
T KOG0333|consen 507 KLIEILESNFDPPIIIFVNTKKGADALAKILEKA----------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDV 576 (673)
T ss_pred HHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc----------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc
Confidence 5555555556679999999999999999999987 899999999999999999999999999999999999
Q ss_pred cccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 283 ~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
+++|||||||.+||||++++ |...|.||+||+||. +.|.++.++++++-
T Consensus 577 AgRGIDIpnVSlVinydmak------------------sieDYtHRIGRTgRAGk~GtaiSflt~~dt 626 (673)
T KOG0333|consen 577 AGRGIDIPNVSLVINYDMAK------------------SIEDYTHRIGRTGRAGKSGTAISFLTPADT 626 (673)
T ss_pred cccCCCCCccceeeecchhh------------------hHHHHHHHhccccccccCceeEEEeccchh
Confidence 99999999999999999887 777999999999999 78999999999883
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.9e-39 Score=334.38 Aligned_cols=303 Identities=17% Similarity=0.210 Sum_probs=215.0
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
..+.|+++++.+.+|+++++++||||||| +++|.+.. ++.++++.|+++++.|+...+.. .+.......+.
T Consensus 26 ~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s~ 98 (607)
T PRK11057 26 FRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQLLA-NGVAAACLNST 98 (607)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHHHH-cCCcEEEEcCC
Confidence 45789999999999999999999999999 35555533 34678899999999999887754 34332211111
Q ss_pred eEe------eccccCccceEEEcCHHHHHHHH-hhCCCCCCCcEEEecCCCccccC-HHHHH--HHHHHHHHhhhcCceE
Q 012322 84 AIR------FEDRTSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLN-TDILL--GLVKRLVNLRASKLKI 153 (466)
Q Consensus 84 ~~~------~~~~~~~~~~i~~~T~g~l~~~~-~~~~~l~~~~~iIiDEah~~~~~-~~~~~--~~l~~i~~~~~~~~~i 153 (466)
... .........+++++||+.+.... .......++++|||||||+...+ .++.. ..+..+....+ +.++
T Consensus 99 ~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p-~~~~ 177 (607)
T PRK11057 99 QTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPF 177 (607)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCC-CCcE
Confidence 000 01112345789999999876432 22223457899999999973322 22322 22444554554 7899
Q ss_pred EEEecccChhH---HHhhcC-CCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHH
Q 012322 154 LITSATLDGEK---VSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (466)
Q Consensus 154 i~~SAT~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l 229 (466)
+++|||++... +...+. ..+.+.......+ ...|....... ....+........++++||||+|+++|+.+
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~----~~~~l~~~l~~~~~~~~IIFc~tr~~~e~l 252 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFK----PLDQLMRYVQEQRGKSGIIYCNSRAKVEDT 252 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccc----hHHHHHHHHHhcCCCCEEEEECcHHHHHHH
Confidence 99999997653 333332 2233333221111 11221111111 122333333445567999999999999999
Q ss_pred HHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCC
Q 012322 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (466)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~ 309 (466)
++.|++. ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||+++.|+
T Consensus 253 a~~L~~~----------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~------- 315 (607)
T PRK11057 253 AARLQSR----------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR------- 315 (607)
T ss_pred HHHHHhC----------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCC-------
Confidence 9999876 78899999999999999999999999999999999999999999999999988876
Q ss_pred CCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 310 ~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
|.++|+||+|||||. .+|.|+.+|+..++
T Consensus 316 -----------s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 316 -----------NIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred -----------CHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 778999999999999 68999999988875
No 38
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-39 Score=320.08 Aligned_cols=303 Identities=19% Similarity=0.172 Sum_probs=220.0
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeE
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI 85 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 85 (466)
.-|+++++.+.++++++++.|||+||| +++|.++. .+..+++.|..+|..++...+.. .|+......+...
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~~-~Gi~A~~lnS~l~ 92 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLEA-AGIRAAYLNSTLS 92 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHHH-cCceeehhhcccC
Confidence 458899999999999999999999999 88888877 34788999999999988887733 3433322222111
Q ss_pred eec------cccCccceEEEcCHHHHHHHHh-hCCCCCCCcEEEecCCCccc-cCHHHHHHH--HHHHHHhhhcCceEEE
Q 012322 86 RFE------DRTSERTLIKYLTDGVLLREIL-SNPDLSPYSVIILDEAHERS-LNTDILLGL--VKRLVNLRASKLKILI 155 (466)
Q Consensus 86 ~~~------~~~~~~~~i~~~T~g~l~~~~~-~~~~l~~~~~iIiDEah~~~-~~~~~~~~~--l~~i~~~~~~~~~ii~ 155 (466)
..+ .-.....+++|.+|+.+..-.. ....-..+.+++||||||-+ |..||..++ +..+....+ +.++++
T Consensus 93 ~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~~p~~A 171 (590)
T COG0514 93 REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-NPPVLA 171 (590)
T ss_pred HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-CCCEEE
Confidence 111 1123457999999998764331 11135678999999999933 333443332 345555555 889999
Q ss_pred EecccChhH---HHhhcC-C-CCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHH
Q 012322 156 TSATLDGEK---VSKFFS-N-CPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (466)
Q Consensus 156 ~SAT~~~~~---~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~ 230 (466)
+|||.++.. +.+.+. + +.++...- ...++.|......+...+.. .+.. ......++.||||.||+.++.++
T Consensus 172 lTATA~~~v~~DI~~~L~l~~~~~~~~sf--dRpNi~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia 247 (590)
T COG0514 172 LTATATPRVRDDIREQLGLQDANIFRGSF--DRPNLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELA 247 (590)
T ss_pred EeCCCChHHHHHHHHHhcCCCcceEEecC--CCchhhhhhhhcccHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHH
Confidence 999998754 333333 2 22322221 11122332222222222221 2221 23455677999999999999999
Q ss_pred HHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCC
Q 012322 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (466)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~ 310 (466)
++|.+. ++.+..|||||+.++|..+++.|..++++|+|||.+++||||.|||++|||+++|+
T Consensus 248 ~~L~~~----------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~-------- 309 (590)
T COG0514 248 EWLRKN----------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG-------- 309 (590)
T ss_pred HHHHHC----------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCC--------
Confidence 999987 89999999999999999999999999999999999999999999999999999887
Q ss_pred CccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchh
Q 012322 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (466)
Q Consensus 311 ~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (466)
|.++|.|.+|||||+ .+..|+.||++++..
T Consensus 310 ----------s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 310 ----------SIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred ----------CHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 778999999999999 799999999988854
No 39
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.9e-39 Score=302.05 Aligned_cols=311 Identities=18% Similarity=0.185 Sum_probs=232.9
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhc--C--cCCCcEEEEeCchhHHHHHHHHHHHHHhCCc---
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRH--G--YTKSGIIGVTQPRRVAAVSVARRVAQELGVR--- 76 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~--~--~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~--- 76 (466)
+-+.|+..+..+..|+++++.|.|||||| .++|.+-... . ...+..+++++|+|+++.|.+....+.+...
T Consensus 105 MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~ 184 (543)
T KOG0342|consen 105 MTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESI 184 (543)
T ss_pred hhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCc
Confidence 45678888999999999999999999999 5566554432 2 2345588999999999999988766554433
Q ss_pred -cCCeeeeeEee--ccccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCc
Q 012322 77 -LGEEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (466)
Q Consensus 77 -~~~~~g~~~~~--~~~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~ 151 (466)
++..+|.+-.. ..+....++|+++|||+|+.++.+.. ...+.+++|+|||| |.++.+|..+ ++.+++..+++.
T Consensus 185 ~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~d-i~~Ii~~lpk~r 262 (543)
T KOG0342|consen 185 TVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEED-VEQIIKILPKQR 262 (543)
T ss_pred ceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHH-HHHHHHhccccc
Confidence 33333322211 11223479999999999999997765 56777899999999 8999999888 788888888899
Q ss_pred eEEEEecccChhH--HHhh-cC-CCCeEeeCCCcCc-----eeeeecCCCCCchHHHHHHHHHHHhhcCCC-CCEEEecC
Q 012322 152 KILITSATLDGEK--VSKF-FS-NCPTLNVPGKLYP-----VEILHSKERPTSYLESALKTAIDIHVREPE-GDVLIFMT 221 (466)
Q Consensus 152 ~ii~~SAT~~~~~--~~~~-~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lVF~~ 221 (466)
|.+++|||.+++. +... +. ++..+.+....-+ ++.-|...+.... +..++..+..... .+++|||+
T Consensus 263 qt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~----f~ll~~~LKk~~~~~KiiVF~s 338 (543)
T KOG0342|consen 263 QTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSR----FSLLYTFLKKNIKRYKIIVFFS 338 (543)
T ss_pred eeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccch----HHHHHHHHHHhcCCceEEEEec
Confidence 9999999998753 3322 22 2333333221111 1111222222222 2223333333333 79999999
Q ss_pred CHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcc
Q 012322 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (466)
Q Consensus 222 t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~ 301 (466)
|...+.-+++.|... .+.|..+||++++..|..++.+|++.+.-||||||+++||+|+|+|++||++|.|
T Consensus 339 T~~~vk~~~~lL~~~----------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P 408 (543)
T KOG0342|consen 339 TCMSVKFHAELLNYI----------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPP 408 (543)
T ss_pred hhhHHHHHHHHHhhc----------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCC
Confidence 999999999999854 8889999999999999999999999999999999999999999999999999987
Q ss_pred cceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchh
Q 012322 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (466)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (466)
. ...+|+||+||+||. +.|.++.+..+.+..
T Consensus 409 ~------------------d~~~YIHRvGRTaR~gk~G~alL~l~p~El~ 440 (543)
T KOG0342|consen 409 S------------------DPEQYIHRVGRTAREGKEGKALLLLAPWELG 440 (543)
T ss_pred C------------------CHHHHHHHhccccccCCCceEEEEeChhHHH
Confidence 6 556999999999998 789999998776654
No 40
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-40 Score=306.48 Aligned_cols=310 Identities=22% Similarity=0.277 Sum_probs=235.9
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcCcCC----CcEEEEeCchhHHHHHHHH---HHHHHhCCccCC
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTK----SGIIGVTQPRRVAAVSVAR---RVAQELGVRLGE 79 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~~~~----~~~i~~~~p~~~l~~~~~~---~~~~~~~~~~~~ 79 (466)
+.|...+....-|++++.+|.|||||| .++.+++....+.+ ..+++++.|+|+++.|++. ++++...+.++.
T Consensus 206 pIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L 285 (691)
T KOG0338|consen 206 PIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGL 285 (691)
T ss_pred chhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeee
Confidence 346666777778899999999999999 66666666554433 3489999999999998766 456667777777
Q ss_pred eeeee-Eee-ccccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 80 EVGYA-IRF-EDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 80 ~~g~~-~~~-~~~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
.+|.. ++. +......++|+++|||++..++.+.+ .+.++.++|+|||+ |+++..|... ++.+++.++.+.|.++
T Consensus 286 ~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFade-mnEii~lcpk~RQTmL 363 (691)
T KOG0338|consen 286 AVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFADE-MNEIIRLCPKNRQTML 363 (691)
T ss_pred eecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHHHH-HHHHHHhcccccccee
Confidence 77632 111 22235679999999999999998877 78999999999999 9998888776 8999999999999999
Q ss_pred EecccChh--HHHhh-cCCCCeEeeCCCcCc---eeeeecC-CCCCc-hHHHHHHHHHHHhhcCCCCCEEEecCCHHHHH
Q 012322 156 TSATLDGE--KVSKF-FSNCPTLNVPGKLYP---VEILHSK-ERPTS-YLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (466)
Q Consensus 156 ~SAT~~~~--~~~~~-~~~~~~~~~~~~~~~---~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~ 227 (466)
+||||+.+ .+... +..+..+.++..... +...|.. .+..+ .-+..+..++. ..-...++||+.|++.|.
T Consensus 364 FSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~---rtf~~~~ivFv~tKk~AH 440 (691)
T KOG0338|consen 364 FSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLIT---RTFQDRTIVFVRTKKQAH 440 (691)
T ss_pred ehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHH---HhcccceEEEEehHHHHH
Confidence 99999764 24433 334444555442211 1111111 11111 11222222222 122468999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeec
Q 012322 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (466)
Q Consensus 228 ~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~ 307 (466)
++.-.|.-. ++.+.-+||+|++++|.+.++.|++++++||||||++++|+||++|..||||.+|+
T Consensus 441 Rl~IllGLl----------gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~----- 505 (691)
T KOG0338|consen 441 RLRILLGLL----------GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPK----- 505 (691)
T ss_pred HHHHHHHHh----------hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCch-----
Confidence 988877654 88899999999999999999999999999999999999999999999999988776
Q ss_pred CCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchh
Q 012322 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (466)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (466)
+...|+||.||+.|. +.|..+.|..+.+..
T Consensus 506 -------------t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRk 536 (691)
T KOG0338|consen 506 -------------TIEHYLHRVGRTARAGRAGRSVTLVGESDRK 536 (691)
T ss_pred -------------hHHHHHHHhhhhhhcccCcceEEEeccccHH
Confidence 788999999999999 789999999887653
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=7.5e-39 Score=331.09 Aligned_cols=302 Identities=19% Similarity=0.218 Sum_probs=214.4
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
..+.|.++++.+.+|+++++++|||+||| +++|.++. ++.++++.|+++++.|+...+.. .+..+....+
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~-~gi~~~~~~s- 85 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRA-AGVAAAYLNS- 85 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHH-cCCcEEEEeC-
Confidence 35689999999999999999999999999 45555432 34678889999999999888755 4443222111
Q ss_pred eEeec-------cccCccceEEEcCHHHHHHHH-hhCCCCCCCcEEEecCCCcccc-CHHHHHH--HHHHHHHhhhcCce
Q 012322 84 AIRFE-------DRTSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSL-NTDILLG--LVKRLVNLRASKLK 152 (466)
Q Consensus 84 ~~~~~-------~~~~~~~~i~~~T~g~l~~~~-~~~~~l~~~~~iIiDEah~~~~-~~~~~~~--~l~~i~~~~~~~~~ 152 (466)
..... .......+++++||+.+.... .......++++|||||||+... ..++... .+..+....+ +.+
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-~~~ 164 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-QVP 164 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC-CCC
Confidence 11111 112345789999999886433 2223456899999999997432 2333222 2334444444 567
Q ss_pred EEEEecccChhH---HHhhcCC--CCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHH
Q 012322 153 ILITSATLDGEK---VSKFFSN--CPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (466)
Q Consensus 153 ii~~SAT~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~ 227 (466)
++++|||++... +..+++- +..+. .. ....+..+......+. ...+........++++||||+|+++++
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~-~~r~nl~~~v~~~~~~----~~~l~~~l~~~~~~~~IIf~~sr~~~e 238 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADANEFI-TS-FDRPNLRFSVVKKNNK----QKFLLDYLKKHRGQSGIIYASSRKKVE 238 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cC-CCCCCcEEEEEeCCCH----HHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 999999997754 4555542 22222 11 1111222221111111 222233333334678999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeec
Q 012322 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (466)
Q Consensus 228 ~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~ 307 (466)
.+++.|... ++.+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|+|++||+++.|+
T Consensus 239 ~la~~L~~~----------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~----- 303 (591)
T TIGR01389 239 ELAERLESQ----------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPG----- 303 (591)
T ss_pred HHHHHHHhC----------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCC-----
Confidence 999999875 78889999999999999999999999999999999999999999999999988876
Q ss_pred CCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchh
Q 012322 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (466)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (466)
|.++|.||+|||||. .+|.|+.+|+..++.
T Consensus 304 -------------s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 304 -------------NLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred -------------CHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 777999999999999 689999999887753
No 42
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-39 Score=298.27 Aligned_cols=326 Identities=19% Similarity=0.198 Sum_probs=244.4
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhc-----CcCCC-cEEEEeCchhHHHHHHHHHHHHH----hCC
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-----GYTKS-GIIGVTQPRRVAAVSVARRVAQE----LGV 75 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~-----~~~~~-~~i~~~~p~~~l~~~~~~~~~~~----~~~ 75 (466)
-+.|..-+..+..++++++.++|||||| .++.+++... ...++ -..+++.|+|+++.|+.+.+... .+.
T Consensus 30 TpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l 109 (567)
T KOG0345|consen 30 TPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNL 109 (567)
T ss_pred CHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhcc
Confidence 3578888899999999999999999999 4544444433 11122 26788999999999987764322 344
Q ss_pred ccCCeeeeeEeeccc---cCccceEEEcCHHHHHHHHhhCC---CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc
Q 012322 76 RLGEEVGYAIRFEDR---TSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (466)
Q Consensus 76 ~~~~~~g~~~~~~~~---~~~~~~i~~~T~g~l~~~~~~~~---~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~ 149 (466)
.+...+|.....++. ...+++|+++|||+|...+.+.. .+..++++|+|||| +.++++|... +..++...|+
T Consensus 110 ~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~-~n~ILs~LPK 187 (567)
T KOG0345|consen 110 NCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEAS-VNTILSFLPK 187 (567)
T ss_pred ceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHH-HHHHHHhccc
Confidence 444455542222211 23568899999999999886633 45599999999999 9999999888 7889999998
Q ss_pred CceEEEEecccChh--H-HHhhcCCCCeEeeCCCc---Cc--eeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecC
Q 012322 150 KLKILITSATLDGE--K-VSKFFSNCPTLNVPGKL---YP--VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMT 221 (466)
Q Consensus 150 ~~~ii~~SAT~~~~--~-~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~ 221 (466)
+.+.-++|||.+.+ . ....+.|+..+.+.... .| +...|.... .+..+..+++++.....+++|||++
T Consensus 188 QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~----a~eK~~~lv~~L~~~~~kK~iVFF~ 263 (567)
T KOG0345|consen 188 QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE----ADEKLSQLVHLLNNNKDKKCIVFFP 263 (567)
T ss_pred ccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec----HHHHHHHHHHHHhccccccEEEEec
Confidence 99999999999653 2 34556666666655433 23 334444322 2344555666666677789999999
Q ss_pred CHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcc
Q 012322 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (466)
Q Consensus 222 t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~ 301 (466)
|...++-.+..+.... ....+..+||.|...+|..++++|++-...+++|||++++|+|||+|++||+++.|
T Consensus 264 TCasVeYf~~~~~~~l--------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP 335 (567)
T KOG0345|consen 264 TCASVEYFGKLFSRLL--------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPP 335 (567)
T ss_pred CcchHHHHHHHHHHHh--------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCC
Confidence 9999999999888763 47789999999999999999999999888999999999999999999999998877
Q ss_pred cceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEec--CccchhhhCCCCCCCccccC
Q 012322 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLY--PSTVYHDEFLDVTVPEIQRS 364 (466)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~--~~~~~~~~~~~~~~p~i~~~ 364 (466)
+ ..++|+||+||+||. +.|.++.+. .+++|...|.....|++.+.
T Consensus 336 ~------------------~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~ 383 (567)
T KOG0345|consen 336 K------------------DPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERI 383 (567)
T ss_pred C------------------ChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhh
Confidence 6 555899999999999 678776665 34455554444445655543
No 43
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-39 Score=287.77 Aligned_cols=313 Identities=20% Similarity=0.241 Sum_probs=235.4
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcCcC-CCcEEEEeCchhHHHHHHHHHHH---HHhCCccCCeee
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVG 82 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~---~~~~~~~~~~~g 82 (466)
+.|+..+..|.+|++++-+|.|||||| .+..+++...... .|...+++.|+|+++.|.++++. +..+.++...+|
T Consensus 32 piQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivG 111 (442)
T KOG0340|consen 32 PIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVG 111 (442)
T ss_pred chHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEc
Confidence 467888899999999999999999999 5555666655443 45688999999999999999873 444555555555
Q ss_pred eeEe--eccccCccceEEEcCHHHHHHHHhhCC-----CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 83 YAIR--FEDRTSERTLIKYLTDGVLLREILSNP-----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 83 ~~~~--~~~~~~~~~~i~~~T~g~l~~~~~~~~-----~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
.... .......+.+++++|||++..++.++. .++++.++|+|||+ +.+..+|-.. ++.+.+..|...+.++
T Consensus 112 G~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~-L~~i~e~lP~~RQtLl 189 (442)
T KOG0340|consen 112 GTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDI-LEGIEECLPKPRQTLL 189 (442)
T ss_pred cHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhH-HhhhhccCCCccceEE
Confidence 3221 223345789999999999999887763 58899999999999 8888877655 7888888886779999
Q ss_pred EecccChhHHHhhcCCC------CeEeeCCCcCceeeeecCCC--CCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHH
Q 012322 156 TSATLDGEKVSKFFSNC------PTLNVPGKLYPVEILHSKER--PTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (466)
Q Consensus 156 ~SAT~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~ 227 (466)
+|||++.. +...++.+ ..++.......++..+.... ..+..+..+-.++.....++++.++||+++..+|+
T Consensus 190 fSATitd~-i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ 268 (442)
T KOG0340|consen 190 FSATITDT-IKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQ 268 (442)
T ss_pred EEeehhhH-HHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHH
Confidence 99999743 34433211 11111111111111111111 01112222233333334446789999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeec
Q 012322 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (466)
Q Consensus 228 ~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~ 307 (466)
.++..|+.. .+.+..+||.|++.+|...+.+|+.+..+||+|||++++|+|||.|+.|||+++|+.
T Consensus 269 ~l~~~l~~l----------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~---- 334 (442)
T KOG0340|consen 269 LLSMTLKNL----------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRD---- 334 (442)
T ss_pred HHHHHHhhh----------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCC----
Confidence 999999886 899999999999999999999999999999999999999999999999999998874
Q ss_pred CCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
...|+||.||+.|. +.|.++.++++.+.+.
T Consensus 335 --------------P~~yiHRvGRtARAGR~G~aiSivt~rDv~l 365 (442)
T KOG0340|consen 335 --------------PKDYIHRVGRTARAGRKGMAISIVTQRDVEL 365 (442)
T ss_pred --------------HHHHHHhhcchhcccCCcceEEEechhhHHH
Confidence 44899999999999 7899999999777643
No 44
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.7e-37 Score=330.80 Aligned_cols=313 Identities=21% Similarity=0.226 Sum_probs=211.4
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcC------cCCCcEEEEeCchhHHHHHHHHHHHH------
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQ------ 71 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~------~~~~~~i~~~~p~~~l~~~~~~~~~~------ 71 (466)
.++.|.+.++.+.+|++++++|||||||| .+++.+..... ...+..++++.|+++++.|+.+++.+
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999 34443322211 12345799999999999999876532
Q ss_pred ----HhCCcc-CCee----eeeEeecc--ccCccceEEEcCHHHHHHHHhhCC---CCCCCcEEEecCCCccccC---HH
Q 012322 72 ----ELGVRL-GEEV----GYAIRFED--RTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLN---TD 134 (466)
Q Consensus 72 ----~~~~~~-~~~~----g~~~~~~~--~~~~~~~i~~~T~g~l~~~~~~~~---~l~~~~~iIiDEah~~~~~---~~ 134 (466)
..+... ...+ |.....+. .....++|+++||+.+..++.... .+.++++|||||+|+ ..+ ..
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~-l~~~~RG~ 191 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS-LAENKRGV 191 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh-hccCccHH
Confidence 112222 1122 21111111 112357899999999876653322 478999999999995 332 22
Q ss_pred HHHHHHHHHHHhhhcCceEEEEecccCh-hHHHhhcCCC-------CeEeeCC---CcCceeeeecC-----CCCCchHH
Q 012322 135 ILLGLVKRLVNLRASKLKILITSATLDG-EKVSKFFSNC-------PTLNVPG---KLYPVEILHSK-----ERPTSYLE 198 (466)
Q Consensus 135 ~~~~~l~~i~~~~~~~~~ii~~SAT~~~-~~~~~~~~~~-------~~~~~~~---~~~~~~~~~~~-----~~~~~~~~ 198 (466)
.+...+.++....+.+.+++++|||+++ +.+.+|+... +...+.. +.......... ........
T Consensus 192 ~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~ 271 (876)
T PRK13767 192 HLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISE 271 (876)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHH
Confidence 3344456666555457899999999954 6677777542 1111211 11112111110 00111112
Q ss_pred HHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEE
Q 012322 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV 278 (466)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilv 278 (466)
.....+.... ...+++||||||++.|+.++..|.+.+... ..+..+.+|||+|++++|..+++.|++|+++|||
T Consensus 272 ~l~~~L~~~i--~~~~~~LVF~nTr~~ae~la~~L~~~~~~~----~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLV 345 (876)
T PRK13767 272 ALYETLHELI--KEHRTTLIFTNTRSGAERVLYNLRKRFPEE----YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVV 345 (876)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHHHhchhh----ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 2223333222 235689999999999999999998754321 1246789999999999999999999999999999
Q ss_pred EecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC----CCCeEEEe
Q 012322 279 STNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT----RPGKCYRL 343 (466)
Q Consensus 279 aT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~----~~G~~~~l 343 (466)
||+++++|||+|++++||++|.|+ |.++|+||+||+||. ..|.++..
T Consensus 346 aTs~Le~GIDip~Vd~VI~~~~P~------------------sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 346 SSTSLELGIDIGYIDLVVLLGSPK------------------SVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred ECChHHhcCCCCCCcEEEEeCCCC------------------CHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 999999999999999999988765 777999999999997 24666664
No 45
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-39 Score=282.83 Aligned_cols=311 Identities=19% Similarity=0.235 Sum_probs=237.8
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcCcC-CCcEEEEeCchhHHHHHHHH---HHHHHhCCccCCee
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVAR---RVAQELGVRLGEEV 81 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~---~~~~~~~~~~~~~~ 81 (466)
++.|++-+.....|++++.-|.+|+||| .+..+.+...... .....++++|+|+++.|..+ ++++..+..+..+.
T Consensus 109 SPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvtt 188 (459)
T KOG0326|consen 109 SPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTT 188 (459)
T ss_pred CCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEec
Confidence 3567888888899999999999999999 4444444444433 34478899999999887654 45666666666666
Q ss_pred eeeEeeccc--cCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEec
Q 012322 82 GYAIRFEDR--TSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (466)
Q Consensus 82 g~~~~~~~~--~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (466)
|.....++. .....+++++|||+.+++..... .+++..++|+|||+ ..++.+|... +..++...|+..|+++.||
T Consensus 189 GGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~-~e~li~~lP~~rQillySA 266 (459)
T KOG0326|consen 189 GGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPI-VEKLISFLPKERQILLYSA 266 (459)
T ss_pred CCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhH-HHHHHHhCCccceeeEEec
Confidence 643332322 34678999999999999886665 78999999999999 7888888766 7888899999999999999
Q ss_pred ccChhH---HHhhcCCCCeEeeCCCc--CceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHH
Q 012322 159 TLDGEK---VSKFFSNCPTLNVPGKL--YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKL 233 (466)
Q Consensus 159 T~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L 233 (466)
|.|... ..+++.++..+..-... ..+..+|.-......+ ..++.++. +-.-.+.+||||+.+.+|.+|..+
T Consensus 267 TFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKv-hCLntLfs---kLqINQsIIFCNS~~rVELLAkKI 342 (459)
T KOG0326|consen 267 TFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKV-HCLNTLFS---KLQINQSIIFCNSTNRVELLAKKI 342 (459)
T ss_pred ccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhh-hhHHHHHH---HhcccceEEEeccchHhHHHHHHH
Confidence 997532 44666666555544322 2223333222221111 12222222 122358899999999999999998
Q ss_pred HHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCcc
Q 012322 234 EDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMY 313 (466)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~ 313 (466)
.+. ++.+.+.|+.|.+++|.+++..|++|..+.+||||.+.+|||+++|++|||+++||
T Consensus 343 Tel----------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk----------- 401 (459)
T KOG0326|consen 343 TEL----------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK----------- 401 (459)
T ss_pred Hhc----------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC-----------
Confidence 876 99999999999999999999999999999999999999999999999999999998
Q ss_pred ccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 314 ~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
+.++|.||+||+||. ..|.++.|.+-++...
T Consensus 402 -------~aEtYLHRIGRsGRFGhlGlAInLityedrf~ 433 (459)
T KOG0326|consen 402 -------NAETYLHRIGRSGRFGHLGLAINLITYEDRFN 433 (459)
T ss_pred -------CHHHHHHHccCCccCCCcceEEEEEehhhhhh
Confidence 666999999999999 7899999988776544
No 46
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=294.64 Aligned_cols=312 Identities=19% Similarity=0.233 Sum_probs=244.6
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHH--hcCc--CCCcEEEEeCchhHHHHHHHHHH---HHHhCCc
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILH--RHGY--TKSGIIGVTQPRRVAAVSVARRV---AQELGVR 76 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~--~~~~--~~~~~i~~~~p~~~l~~~~~~~~---~~~~~~~ 76 (466)
+-+.|.+.+.....|++++-.|.|||||| .++|.+-. ...+ ..|--.+++.|+|+++.|.+..+ ++...+.
T Consensus 92 ~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fS 171 (758)
T KOG0343|consen 92 MTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFS 171 (758)
T ss_pred HHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccc
Confidence 34677788888889999999999999999 44443322 2233 23557889999999999988865 4555667
Q ss_pred cCCeeeee-EeeccccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceE
Q 012322 77 LGEEVGYA-IRFEDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (466)
Q Consensus 77 ~~~~~g~~-~~~~~~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~i 153 (466)
.|..+|.. +.++.......+|++||||+|+.++...+ ...++.++|+|||+ |.++++|... +..++...|...|.
T Consensus 172 aGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~t-L~~Ii~~lP~~RQT 249 (758)
T KOG0343|consen 172 AGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKT-LNAIIENLPKKRQT 249 (758)
T ss_pred cceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHH-HHHHHHhCChhhee
Confidence 77777633 23344445678999999999999998777 56788899999999 9999998776 88899999889999
Q ss_pred EEEecccCh--hHHHhh-cCCCCeEeeCCCc---Cc--eeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHH
Q 012322 154 LITSATLDG--EKVSKF-FSNCPTLNVPGKL---YP--VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (466)
Q Consensus 154 i~~SAT~~~--~~~~~~-~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~ 225 (466)
+++|||... ..+++. +.++..+.+.... .| +...|...+ +...++.+......+.+.++|||+.|.++
T Consensus 250 LLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~----l~~Ki~~L~sFI~shlk~K~iVF~SscKq 325 (758)
T KOG0343|consen 250 LLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP----LEDKIDMLWSFIKSHLKKKSIVFLSSCKQ 325 (758)
T ss_pred eeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe----hhhHHHHHHHHHHhccccceEEEEehhhH
Confidence 999999854 345554 4456665554221 11 112222211 34456666666677778899999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCccccee
Q 012322 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (466)
Q Consensus 226 ~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~ 305 (466)
+.-+++.+.+.- ++..+..+||+|++..|.+++..|-..+.-|++|||++++|+|+|.|++||+++.|.
T Consensus 326 vkf~~e~F~rlr--------pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPe--- 394 (758)
T KOG0343|consen 326 VKFLYEAFCRLR--------PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPE--- 394 (758)
T ss_pred HHHHHHHHHhcC--------CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCch---
Confidence 999999998762 689999999999999999999999998899999999999999999999999977654
Q ss_pred ecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 306 ~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
...+|+||+||+.|. ..|.|+.+.++.+.
T Consensus 395 ---------------dv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 395 ---------------DVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred ---------------hHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 777999999999999 78999998877763
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=308.47 Aligned_cols=299 Identities=22% Similarity=0.261 Sum_probs=226.9
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCc-----CCCcEEEEeCchhHHHHHHHHHH---HHHhCCc
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY-----TKSGIIGVTQPRRVAAVSVARRV---AQELGVR 76 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~-----~~~~~i~~~~p~~~l~~~~~~~~---~~~~~~~ 76 (466)
.+.|.+++..+.+|++++|+|||||||| .++|.+...... ..+..++++.|.|++.+++..++ .+.+|..
T Consensus 24 t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~ 103 (814)
T COG1201 24 TPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIE 103 (814)
T ss_pred CHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCc
Confidence 4679999999999999999999999999 566655544433 23458899999999999998886 4567777
Q ss_pred cCCeeeeeEeeccc--cCccceEEEcCHHHHHHHHhhCC---CCCCCcEEEecCCCccc-cCHHH-HHHHHHHHHHhhhc
Q 012322 77 LGEEVGYAIRFEDR--TSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERS-LNTDI-LLGLVKRLVNLRAS 149 (466)
Q Consensus 77 ~~~~~g~~~~~~~~--~~~~~~i~~~T~g~l~~~~~~~~---~l~~~~~iIiDEah~~~-~~~~~-~~~~l~~i~~~~~~ 149 (466)
+....|.....+.+ ....++|+++|||.|.-.+.+.. .+.++.++||||+|+-. -..+. +.-.+.++....+
T Consensus 104 v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~- 182 (814)
T COG1201 104 VAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG- 182 (814)
T ss_pred cceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc-
Confidence 76666655444333 34568999999999987775432 79999999999999611 22222 2223666666666
Q ss_pred CceEEEEeccc-ChhHHHhhcCCC----CeEeeCC-CcCceeeeecCCCCC---chHHHHHHHHHHHhhcCCCCCEEEec
Q 012322 150 KLKILITSATL-DGEKVSKFFSNC----PTLNVPG-KLYPVEILHSKERPT---SYLESALKTAIDIHVREPEGDVLIFM 220 (466)
Q Consensus 150 ~~~ii~~SAT~-~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lVF~ 220 (466)
+.+.|++|||. +++.+++|+... .++.... +...+++........ .........+.....+ ...+|||+
T Consensus 183 ~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~--~~ttLIF~ 260 (814)
T COG1201 183 DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKK--HRTTLIFT 260 (814)
T ss_pred ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhh--cCcEEEEE
Confidence 89999999999 667899998654 3444443 334444443332211 1122333444443333 34899999
Q ss_pred CCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCc
Q 012322 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (466)
Q Consensus 221 ~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~ 300 (466)
|||..++.++..|++.. ...+..|||+++.++|..++++|++|+.+++|||+.+|-|||+.+|+.||+++-
T Consensus 261 NTR~~aE~l~~~L~~~~---------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~S 331 (814)
T COG1201 261 NTRSGAERLAFRLKKLG---------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGS 331 (814)
T ss_pred eChHHHHHHHHHHHHhc---------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCC
Confidence 99999999999999873 477899999999999999999999999999999999999999999999999887
Q ss_pred ccceeecCCCCccccceeeecHHHHHHhccccCCC
Q 012322 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (466)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~ 335 (466)
|+ +.+.+.||+||+|+.
T Consensus 332 P~------------------sV~r~lQRiGRsgHr 348 (814)
T COG1201 332 PK------------------SVNRFLQRIGRAGHR 348 (814)
T ss_pred cH------------------HHHHHhHhccccccc
Confidence 77 677999999999998
No 48
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-36 Score=273.77 Aligned_cols=318 Identities=18% Similarity=0.209 Sum_probs=238.4
Q ss_pred HhHHHHHHHHhc--CCEEEEEcCCCCcHH-HHHHHHHHhcCcC-CCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 8 QYEETIVETVEQ--NPVVVVIGETGSGKS-TQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 8 ~~q~~i~~~i~~--~~~~ii~apTGsGKT-t~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
..|+..+..+.. .+++|.++.+|+||| .++..++.+.... .....+|+.|+++++.|.-+-+.+ .|.....+..|
T Consensus 115 kIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~e-MGKf~~ita~y 193 (477)
T KOG0332|consen 115 KIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEE-MGKFTELTASY 193 (477)
T ss_pred hHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHH-hcCceeeeEEE
Confidence 456666666553 578999999999999 4555555544433 345788999999999998876644 44444556666
Q ss_pred eEeeccccC---ccceEEEcCHHHHHHHHhh--CCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEec
Q 012322 84 AIRFEDRTS---ERTLIKYLTDGVLLREILS--NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (466)
Q Consensus 84 ~~~~~~~~~---~~~~i~~~T~g~l~~~~~~--~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (466)
.++...... -..+|++.|||.+..++.. ...+..+.++|+|||+ .++++.-+.+.-.++....+++.+++++||
T Consensus 194 air~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFSA 272 (477)
T KOG0332|consen 194 AIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFSA 272 (477)
T ss_pred EecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-hhhhcccccccchhhhhhcCCcceEEeeec
Confidence 666553332 3478999999999998865 3378899999999999 666665444445566666777999999999
Q ss_pred ccChhH---HHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHH
Q 012322 159 TLDGEK---VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLED 235 (466)
Q Consensus 159 T~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~ 235 (466)
|..... ......++..+.+..+...+...++-......-+.++..+.+++-.-.-|+.+|||.|++.+..++..+..
T Consensus 273 Tf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~ 352 (477)
T KOG0332|consen 273 TFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRA 352 (477)
T ss_pred hhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHh
Confidence 996532 34566777777776654433333322222222334445555555444457999999999999999999998
Q ss_pred hhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCcccc
Q 012322 236 KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (466)
Q Consensus 236 ~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~ 315 (466)
. |..|..+||+|..++|..+++.|++|+-+|||+||+.+||||++.|.+||||++|-. |+.
T Consensus 353 ~----------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~--~~~------- 413 (477)
T KOG0332|consen 353 E----------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVK--YTG------- 413 (477)
T ss_pred c----------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccc--cCC-------
Confidence 7 899999999999999999999999999999999999999999999999999999842 211
Q ss_pred ceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 316 DVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 316 ~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
.-+++.|+||+||+||. +.|.++.+...++-
T Consensus 414 ---~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s 445 (477)
T KOG0332|consen 414 ---EPDYETYLHRIGRTGRFGKKGLAINLVDDKDS 445 (477)
T ss_pred ---CCCHHHHHHHhcccccccccceEEEeecccCc
Confidence 13788999999999999 78999998866544
No 49
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=289.80 Aligned_cols=306 Identities=17% Similarity=0.173 Sum_probs=221.1
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCc--------C--CCcEEEEeCchhHHHHHHHHHHHHHhCC
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY--------T--KSGIIGVTQPRRVAAVSVARRVAQELGV 75 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~--------~--~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 75 (466)
.+|+--+..+..|+.+.++|+|||||| .++|.+-..... . .....+++.|+|+++.|++.+..+....
T Consensus 99 pvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~ 178 (482)
T KOG0335|consen 99 PVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYL 178 (482)
T ss_pred cceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccc
Confidence 356666788899999999999999999 455554443211 1 1358899999999999999987766543
Q ss_pred ccCCe-eeeeEe----eccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccC-HHHHHHHHHHHHHhhh
Q 012322 76 RLGEE-VGYAIR----FEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRA 148 (466)
Q Consensus 76 ~~~~~-~g~~~~----~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~-~~~~~~~l~~i~~~~~ 148 (466)
..-.. +.|... ........++|+++|||.|...+.... .+.++.++|+|||+ +++| ++|... +++++....
T Consensus 179 s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~-Ir~iv~~~~ 256 (482)
T KOG0335|consen 179 SGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQ-IRKIVEQLG 256 (482)
T ss_pred ccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-Hhhhhcccccc-HHHHhcccC
Confidence 32222 222211 111223579999999999999885444 79999999999999 8888 777666 677766543
Q ss_pred ----cCceEEEEecccChhH--H-HhhcCC-CCeEeeC---CCcCceeeeecCCCCCchHHHHHHHHHHHhhcC----CC
Q 012322 149 ----SKLKILITSATLDGEK--V-SKFFSN-CPTLNVP---GKLYPVEILHSKERPTSYLESALKTAIDIHVRE----PE 213 (466)
Q Consensus 149 ----~~~~ii~~SAT~~~~~--~-~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 213 (466)
...+.+++|||.+.+. + ..++.+ ...+.+. +..-.+..........+ +...+++++... ..
T Consensus 257 ~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~----kr~~Lldll~~~~~~~~~ 332 (482)
T KOG0335|consen 257 MPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEME----KRSKLLDLLNKDDGPPSD 332 (482)
T ss_pred CCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchh----hHHHHHHHhhcccCCccc
Confidence 3789999999998643 2 233333 2222222 11111111111111111 222223333211 23
Q ss_pred C-----CEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccc
Q 012322 214 G-----DVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLT 288 (466)
Q Consensus 214 ~-----~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gid 288 (466)
+ .++|||.|++.+..++..|... ++....+||..++.+|.+.++.|+.|+..++|||+++++|+|
T Consensus 333 ~~~~~e~tlvFvEt~~~~d~l~~~l~~~----------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlD 402 (482)
T KOG0335|consen 333 GEPKWEKTLVFVETKRGADELAAFLSSN----------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLD 402 (482)
T ss_pred CCcccceEEEEeeccchhhHHHHHHhcC----------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCC
Confidence 3 8999999999999999999886 888999999999999999999999999999999999999999
Q ss_pred cCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCcc
Q 012322 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (466)
Q Consensus 289 ip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 347 (466)
+|+|++||+|++|. ...+|+||+||+||. ..|.+..++...
T Consensus 403 i~~V~hVInyDmP~------------------d~d~YvHRIGRTGR~Gn~G~atsf~n~~ 444 (482)
T KOG0335|consen 403 IPNVKHVINYDMPA------------------DIDDYVHRIGRTGRVGNGGRATSFFNEK 444 (482)
T ss_pred CCCCceeEEeecCc------------------chhhHHHhccccccCCCCceeEEEeccc
Confidence 99999999998877 455999999999999 679999998733
No 50
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=4.6e-36 Score=324.54 Aligned_cols=296 Identities=23% Similarity=0.220 Sum_probs=197.1
Q ss_pred EEcCCCCcHH--HHHHHHHHhcCc----------CCCcEEEEeCchhHHHHHHHHHHHHHh---------------CCcc
Q 012322 25 VIGETGSGKS--TQLSQILHRHGY----------TKSGIIGVTQPRRVAAVSVARRVAQEL---------------GVRL 77 (466)
Q Consensus 25 i~apTGsGKT--t~~~~~~~~~~~----------~~~~~i~~~~p~~~l~~~~~~~~~~~~---------------~~~~ 77 (466)
|++||||||| .+++.+...... .++.+++|+.|+++++.|+.+++...+ ++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999 445544433211 134689999999999999998874311 1222
Q ss_pred CCeeeeeEeecc--ccCccceEEEcCHHHHHHHHhhC--CCCCCCcEEEecCCCccccCHH---HHHHHHHHHHHhhhcC
Q 012322 78 GEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTD---ILLGLVKRLVNLRASK 150 (466)
Q Consensus 78 ~~~~g~~~~~~~--~~~~~~~i~~~T~g~l~~~~~~~--~~l~~~~~iIiDEah~~~~~~~---~~~~~l~~i~~~~~~~ 150 (466)
+...|.....+. .....++|+++||+++..++.+. ..++++++|||||+|. ..+.. .+...+.++....+.+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~-L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHA-VAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHH-hcccccccHHHHHHHHHHHhCCCC
Confidence 222221111111 11246799999999998776543 3689999999999995 33332 2344466776666667
Q ss_pred ceEEEEeccc-ChhHHHhhcCCC-CeEee-CC--CcCceeeeecCCCCCc------------------hH-HHHHHHHHH
Q 012322 151 LKILITSATL-DGEKVSKFFSNC-PTLNV-PG--KLYPVEILHSKERPTS------------------YL-ESALKTAID 206 (466)
Q Consensus 151 ~~ii~~SAT~-~~~~~~~~~~~~-~~~~~-~~--~~~~~~~~~~~~~~~~------------------~~-~~~~~~~~~ 206 (466)
.|+|++|||+ |.+.+.+|+... ++..+ .. +..++++........+ .. ......++.
T Consensus 160 ~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~ 239 (1490)
T PRK09751 160 AQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILD 239 (1490)
T ss_pred CeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHH
Confidence 8999999999 556788998643 22112 11 2233332221111000 00 001112222
Q ss_pred HhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhcc----------------CC-------CCCCeEEEeecCCCCHHHHh
Q 012322 207 IHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLD----------------EG-------SCMDAVILPLHGSLPPEMQV 263 (466)
Q Consensus 207 ~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~----------------~~-------~~~~~~v~~~h~~l~~~~r~ 263 (466)
.. ...+++||||||++.|+.++..|++...+.. .+ ......+..|||+|++++|.
T Consensus 240 ~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 240 EV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 22 2357899999999999999999987532100 00 00123477899999999999
Q ss_pred cccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC--CCeEE
Q 012322 264 RVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR--PGKCY 341 (466)
Q Consensus 264 ~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~--~G~~~ 341 (466)
.+++.|++|++++||||+++++|||+++|++||++|.|+ |.++|+||+||+||.. .+.++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~------------------sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPL------------------SVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCC------------------CHHHHHHHhCCCCCCCCCccEEE
Confidence 999999999999999999999999999999999988765 7889999999999983 34444
No 51
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=299.63 Aligned_cols=438 Identities=17% Similarity=0.178 Sum_probs=283.8
Q ss_pred hHhHHHHHH-HHhcCCEEEEEcCCCCcHHHHHH-HHHHhcC--------cCCCcEEEEeCchhHHHHHHHHHHHHHhC--
Q 012322 7 LQYEETIVE-TVEQNPVVVVIGETGSGKSTQLS-QILHRHG--------YTKSGIIGVTQPRRVAAVSVARRVAQELG-- 74 (466)
Q Consensus 7 ~~~q~~i~~-~i~~~~~~ii~apTGsGKTt~~~-~~~~~~~--------~~~~~~i~~~~p~~~l~~~~~~~~~~~~~-- 74 (466)
...|.++.+ +...+++.+|+||||||||-++. .++.... ...+-++++++|.++++.+..+.+.+.++
T Consensus 112 N~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~ 191 (1230)
T KOG0952|consen 112 NRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL 191 (1230)
T ss_pred HHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc
Confidence 345555544 45789999999999999994333 3333222 12345899999999999999999987764
Q ss_pred -CccCCeeeeeEeeccccCccceEEEcCHHHHHHHH---hh-CCCCCCCcEEEecCCCccccCHH-HHHHHHHHHH---H
Q 012322 75 -VRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREI---LS-NPDLSPYSVIILDEAHERSLNTD-ILLGLVKRLV---N 145 (466)
Q Consensus 75 -~~~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~---~~-~~~l~~~~~iIiDEah~~~~~~~-~~~~~l~~i~---~ 145 (466)
..+.+..|..... .....+++|+++||+...-.- .. ..+++.+.++||||+|...-+.+ .+..++.+.+ .
T Consensus 192 gi~v~ELTGD~ql~-~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ve 270 (1230)
T KOG0952|consen 192 GISVRELTGDTQLT-KTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVE 270 (1230)
T ss_pred cceEEEecCcchhh-HHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHH
Confidence 5555555532222 222567999999999753222 11 22678899999999997332322 2344444333 2
Q ss_pred hhhcCceEEEEecccCh-hHHHhhcCC---CCeEeeCCCcCce--eeeecCCCCC--c-----hHHHHHHHHHHHhhcCC
Q 012322 146 LRASKLKILITSATLDG-EKVSKFFSN---CPTLNVPGKLYPV--EILHSKERPT--S-----YLESALKTAIDIHVREP 212 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~~-~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~ 212 (466)
.....++++++|||+|+ ++++.|++. ..++.+.++..|+ ...+...... . .-....+.+.+.+ ..
T Consensus 271 ssqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~ 348 (1230)
T KOG0952|consen 271 SSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QE 348 (1230)
T ss_pred hhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--Hc
Confidence 33348899999999965 789999975 3456666654443 3333222111 1 1122233333333 34
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhccCC------C-------CCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEE
Q 012322 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEG------S-------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS 279 (466)
Q Consensus 213 ~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~------~-------~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilva 279 (466)
+.+++|||++|+++.+.|+.|.+.....+.. . +...++..||+||..++|..+++.|..|.++|++|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 6799999999999999999998765443221 0 01245778999999999999999999999999999
Q ss_pred ecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC---CCCeEEEecCccchhhhCC--
Q 012322 280 TNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTVYHDEFL-- 354 (466)
Q Consensus 280 T~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~---~~G~~~~l~~~~~~~~~~~-- 354 (466)
|++++.|+|+|+-.++|- .+..||++.|... -.+....+|..|||||. ..|..+.+.+.+..+.+..
T Consensus 429 TaTLAwGVNLPA~aViIK----GT~~ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 429 TATLAWGVNLPAYAVIIK----GTQVYDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred cceeeeccCCcceEEEec----CCcccccccCcee----eehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 999999999997666664 5678998876432 22566778999999998 5688888877775544322
Q ss_pred ---------------CCCCCccccC---CchHHHHHHHhC----CCCCCc----cccccCCCCCCH-----HHHHHHHHH
Q 012322 355 ---------------DVTVPEIQRS---SLAGSVLYLKSL----DLSDIN----VLKFDFLDPPSS-----ESLEDALKQ 403 (466)
Q Consensus 355 ---------------~~~~p~i~~~---~l~~~~l~l~~~----~~~~~~----~~~~~~~~~p~~-----~~~~~~l~~ 403 (466)
++-..||... ++++.+-+++.. ++..+. +..-+....|.. +-+..+++.
T Consensus 501 ~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~ 580 (1230)
T KOG0952|consen 501 TGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAME 580 (1230)
T ss_pred cCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHH
Confidence 2223333332 333444443321 010000 000011112211 223345555
Q ss_pred HHHcccc--cCCC---CCCHHHHHHccCCCCHHHHHHHHHhhh-hCCHHHHHHHhhhh
Q 012322 404 LYLIDAI--DENG---SITSIGRTMAELPLEPSLSRMLMEANE-FGCLSQALTVAAML 455 (466)
Q Consensus 404 L~~~~~l--~~~~---~~T~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~ 455 (466)
|-+...+ |..+ ..|.+||.++.+++..+..+.+..... +--.++++-++|.-
T Consensus 581 L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~a 638 (1230)
T KOG0952|consen 581 LDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMA 638 (1230)
T ss_pred hhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhh
Confidence 5544333 4433 789999999999999999999999988 77888888777653
No 52
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-36 Score=280.69 Aligned_cols=344 Identities=19% Similarity=0.198 Sum_probs=238.8
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcC------cCCCcEEEEeCchhHHHHHHHHHHHHHhCCccC
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~------~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 78 (466)
-+.|.+.+..+.+|++++|.++|||||| +++|.+-.... ...|...++++|+|+++.|.++.+.+.....-.
T Consensus 161 TsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hW 240 (708)
T KOG0348|consen 161 TSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHW 240 (708)
T ss_pred chHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceE
Confidence 3567788888899999999999999999 56665544332 234678999999999999999988777665444
Q ss_pred CeeeeeEeeccccC------ccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh--
Q 012322 79 EEVGYAIRFEDRTS------ERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-- 148 (466)
Q Consensus 79 ~~~g~~~~~~~~~~------~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-- 148 (466)
...|+....+.+.+ ...+|++.|||+|.+++.+-. .++++..+|+||++ +.++.+|-.. +..+++...
T Consensus 241 IVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekd-it~Il~~v~~~ 318 (708)
T KOG0348|consen 241 IVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKD-ITQILKAVHSI 318 (708)
T ss_pred EeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhh-HHHHHHHHhhc
Confidence 44454444454443 468999999999999997665 67889999999999 8888887555 344433321
Q ss_pred -----------cCceEEEEecccChh--HHHhh-cCCCCeEeeCCCc---C----------c---------------eee
Q 012322 149 -----------SKLKILITSATLDGE--KVSKF-FSNCPTLNVPGKL---Y----------P---------------VEI 186 (466)
Q Consensus 149 -----------~~~~ii~~SAT~~~~--~~~~~-~~~~~~~~~~~~~---~----------~---------------~~~ 186 (466)
...+-+++|||++.. .+++. +.++..+...... . + ...
T Consensus 319 ~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~q 398 (708)
T KOG0348|consen 319 QNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQ 398 (708)
T ss_pred cchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhh
Confidence 136778999999653 34433 2333333311100 0 0 001
Q ss_pred eecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCC------------CCCCeEEEeec
Q 012322 187 LHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEG------------SCMDAVILPLH 254 (466)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~------------~~~~~~v~~~h 254 (466)
.|...+..-.+-.....+.+.....+..+++||+.+.+.++-=+..+......-.++ -..+..+.-+|
T Consensus 399 ry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLH 478 (708)
T KOG0348|consen 399 RYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLH 478 (708)
T ss_pred ceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEec
Confidence 111122222233334444455555566789999999999999888887765431100 11356789999
Q ss_pred CCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCC
Q 012322 255 GSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR 334 (466)
Q Consensus 255 ~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR 334 (466)
|+|++++|..+++.|...+.-|++|||++++|+|+|+|++||+|+-| .+.++|+||+||+.|
T Consensus 479 Gsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P------------------~s~adylHRvGRTAR 540 (708)
T KOG0348|consen 479 GSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPP------------------FSTADYLHRVGRTAR 540 (708)
T ss_pred CchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCC------------------CCHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999996644 388899999999999
Q ss_pred C-CCCeEEEec--CccchhhhCCCCCCCccccCCchHHHH
Q 012322 335 T-RPGKCYRLY--PSTVYHDEFLDVTVPEIQRSSLAGSVL 371 (466)
Q Consensus 335 ~-~~G~~~~l~--~~~~~~~~~~~~~~p~i~~~~l~~~~l 371 (466)
. +.|.++.+. ++.+|.+.+..+ .+.+...++..++.
T Consensus 541 aG~kG~alLfL~P~Eaey~~~l~~~-~~~l~q~~~~~~l~ 579 (708)
T KOG0348|consen 541 AGEKGEALLFLLPSEAEYVNYLKKH-HIMLLQFDMEILLP 579 (708)
T ss_pred ccCCCceEEEecccHHHHHHHHHhh-cchhhccchhhhhh
Confidence 8 677766554 555565533333 33355555554433
No 53
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=276.78 Aligned_cols=310 Identities=20% Similarity=0.222 Sum_probs=232.1
Q ss_pred hHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcC------cCCCcEEEEeCchhHHHHHHHHHHHHHh--CCccC
Q 012322 9 YEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLG 78 (466)
Q Consensus 9 ~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~------~~~~~~i~~~~p~~~l~~~~~~~~~~~~--~~~~~ 78 (466)
.|.+.+..+.+|.+++.+|.||+||| .++|.++.... ...+..++++.|+++++.|+.-...++. +....
T Consensus 246 IqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksv 325 (629)
T KOG0336|consen 246 IQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSV 325 (629)
T ss_pred chhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceE
Confidence 34456777899999999999999999 55555554332 2245688999999999999877654432 33333
Q ss_pred CeeeeeEeecc--ccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 79 EEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 79 ~~~g~~~~~~~--~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
...|..-+.+. ....+..|+++|||.|-.+..... .+..+.++|+|||+ +++|++|-..+.+.++..+| +.++++
T Consensus 326 c~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRP-DRqtvm 403 (629)
T KOG0336|consen 326 CVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRP-DRQTVM 403 (629)
T ss_pred EEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCC-cceeee
Confidence 33333323222 234678999999999999887766 78999999999999 99999999887777777777 999999
Q ss_pred EecccChhH---HHhhcCCCCeEeeCCC----cCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHH
Q 012322 156 TSATLDGEK---VSKFFSNCPTLNVPGK----LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (466)
Q Consensus 156 ~SAT~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~ 228 (466)
.|||.|... ...|+.++..+.+..- ...++..+......+.. ......+. ......++||||..+..|..
T Consensus 404 TSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~--~ms~ndKvIiFv~~K~~AD~ 480 (629)
T KOG0336|consen 404 TSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVA--NMSSNDKVIIFVSRKVMADH 480 (629)
T ss_pred ecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHH--hcCCCceEEEEEechhhhhh
Confidence 999998743 4577765544433321 11222222211222222 22222222 22445699999999999888
Q ss_pred HHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecC
Q 012322 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (466)
Q Consensus 229 l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~ 308 (466)
+...+.-. ++....+||+-.+.+|+..++.|+.|+++||||||++++|+|+|||++|++|++|.
T Consensus 481 LSSd~~l~----------gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~------ 544 (629)
T KOG0336|consen 481 LSSDFCLK----------GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPR------ 544 (629)
T ss_pred ccchhhhc----------ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCc------
Confidence 88776543 78888999999999999999999999999999999999999999999999999987
Q ss_pred CCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 309 ~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
..++|+||+||+||. +.|..+.+++.+++..
T Consensus 545 ------------nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 545 ------------NIEEYVHRVGRTGRAGRTGTSISFLTRNDWSM 576 (629)
T ss_pred ------------cHHHHHHHhcccccCCCCcceEEEEehhhHHH
Confidence 667999999999999 7899999999988854
No 54
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-35 Score=277.26 Aligned_cols=312 Identities=22% Similarity=0.253 Sum_probs=234.4
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhc-----CcCCCcEEEEeCchhHHHHHHHHH---HHHHhCCc
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRH-----GYTKSGIIGVTQPRRVAAVSVARR---VAQELGVR 76 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~-----~~~~~~~i~~~~p~~~l~~~~~~~---~~~~~~~~ 76 (466)
++.|.+++.....|++++-+|-|||||| ...|.+.... ....+...++++|+++++.|+... +.+-+++.
T Consensus 247 tpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~ 326 (731)
T KOG0339|consen 247 TPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLR 326 (731)
T ss_pred CcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccce
Confidence 3567778888899999999999999999 4555555533 234567889999999999998664 44555666
Q ss_pred cCCeeeeeEeeccc--cCccceEEEcCHHHHHHHH-hhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceE
Q 012322 77 LGEEVGYAIRFEDR--TSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (466)
Q Consensus 77 ~~~~~g~~~~~~~~--~~~~~~i~~~T~g~l~~~~-~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~i 153 (466)
+....|....++.. ....+.|+++|||+|..+. +....+.+++++|+||++ |+++++|... ++.|.....++.|.
T Consensus 327 ~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~q-VrSI~~hirpdrQt 404 (731)
T KOG0339|consen 327 VVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQ-VRSIKQHIRPDRQT 404 (731)
T ss_pred EEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHH-HHHHHhhcCCcceE
Confidence 55555544333322 2367899999999999988 444589999999999999 9999999887 67777666569999
Q ss_pred EEEecccChhH---HHhhcCCCCeEeeCC---CcCceeeeecCCCCCchHHHHHHHHHH-HhhcCCCCCEEEecCCHHHH
Q 012322 154 LITSATLDGEK---VSKFFSNCPTLNVPG---KLYPVEILHSKERPTSYLESALKTAID-IHVREPEGDVLIFMTGQDDI 226 (466)
Q Consensus 154 i~~SAT~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lVF~~t~~~~ 226 (466)
+++|||+.... ..+++.++..+.... ..-.+.......+. -..++..++. +......|++|+|+..+.++
T Consensus 405 llFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s---~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~ 481 (731)
T KOG0339|consen 405 LLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPS---EEKKLNWLLRHLVEFSSEGKVLIFVTKKADA 481 (731)
T ss_pred EEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccC---cHHHHHHHHHHhhhhccCCcEEEEEeccCCH
Confidence 99999997642 446666544332211 11111100000000 1112222221 12234568999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceee
Q 012322 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (466)
Q Consensus 227 ~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~ 306 (466)
++++..|.-. ++++..+||++.+.+|.+++.+|+++...|+||||++++|+|||+++.||++++.+
T Consensus 482 e~i~a~Lklk----------~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ar---- 547 (731)
T KOG0339|consen 482 EEIAANLKLK----------GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFAR---- 547 (731)
T ss_pred HHHHHHhccc----------cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccc----
Confidence 9999999776 89999999999999999999999999999999999999999999999999988765
Q ss_pred cCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 307 ~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
+...+.||+||+||. ..|.+|.|+++.+-..
T Consensus 548 --------------dIdththrigrtgRag~kGvayTlvTeKDa~f 579 (731)
T KOG0339|consen 548 --------------DIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEF 579 (731)
T ss_pred --------------hhHHHHHHhhhcccccccceeeEEechhhHHH
Confidence 667899999999999 6799999999987643
No 55
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.2e-34 Score=271.53 Aligned_cols=323 Identities=19% Similarity=0.207 Sum_probs=222.9
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHH-hcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeee
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILH-RHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~-~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g 82 (466)
+--..||..+......+ +++++.|||-|||+.+...+. .....++ +++++.|++-|+.|.+..+.+.++......+.
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheee
Confidence 45567898888887776 788999999999977665555 3444444 99999999999999999999999987665544
Q ss_pred eeEee--cccc--CccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 83 YAIRF--EDRT--SERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 83 ~~~~~--~~~~--~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
..... +.+. -.+.+|.++||+.+.+-+.+.. .+.++.++|+|||| |.......-.+.+..++... +..++++|
T Consensus 92 ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k-~~~ilgLT 169 (542)
T COG1111 92 LTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAK-NPLILGLT 169 (542)
T ss_pred ecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhcc-CceEEEEe
Confidence 32222 1111 1457899999999998886665 88999999999999 88777666666777776665 88999999
Q ss_pred cccC--hhHHHhhcCCCCe--Eee--CCC----c--CceeeeecCCC---------------------------------
Q 012322 158 ATLD--GEKVSKFFSNCPT--LNV--PGK----L--YPVEILHSKER--------------------------------- 192 (466)
Q Consensus 158 AT~~--~~~~~~~~~~~~~--~~~--~~~----~--~~~~~~~~~~~--------------------------------- 192 (466)
||+- .+.+.+...+..+ +.+ +.. . ...++.+.+..
T Consensus 170 ASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~ 249 (542)
T COG1111 170 ASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSS 249 (542)
T ss_pred cCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccC
Confidence 9993 3455555433111 111 000 0 00011110000
Q ss_pred ---CC----------------c---------------------------------hH-----------------------
Q 012322 193 ---PT----------------S---------------------------------YL----------------------- 197 (466)
Q Consensus 193 ---~~----------------~---------------------------------~~----------------------- 197 (466)
.. + |+
T Consensus 250 ~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~ 329 (542)
T COG1111 250 PVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPY 329 (542)
T ss_pred cccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChh
Confidence 00 0 00
Q ss_pred -HHH--------------------HHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCC
Q 012322 198 -ESA--------------------LKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS 256 (466)
Q Consensus 198 -~~~--------------------~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~ 256 (466)
... .+.+.......++.++|||.+-|+.++.+.+.|.+...... ....|-.-.-...|
T Consensus 330 ~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~-~rFiGQa~r~~~~G 408 (542)
T COG1111 330 FKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR-VRFIGQASREGDKG 408 (542)
T ss_pred hHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-eEEeeccccccccc
Confidence 000 00001111233446999999999999999999988732210 00000000112368
Q ss_pred CCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC
Q 012322 257 LPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR 336 (466)
Q Consensus 257 l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 336 (466)
|++.+|.++++.|++|..+|||||+++|.|+|||+++.||.| +|.. |..-++||.||+||.+
T Consensus 409 MsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifY--------Epvp----------SeIR~IQR~GRTGR~r 470 (542)
T COG1111 409 MSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFY--------EPVP----------SEIRSIQRKGRTGRKR 470 (542)
T ss_pred cCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEe--------cCCc----------HHHHHHHhhCccccCC
Confidence 999999999999999999999999999999999999999973 3322 6778899999999999
Q ss_pred CCeEEEecCccch
Q 012322 337 PGKCYRLYPSTVY 349 (466)
Q Consensus 337 ~G~~~~l~~~~~~ 349 (466)
+|..|.|+++...
T Consensus 471 ~Grv~vLvt~gtr 483 (542)
T COG1111 471 KGRVVVLVTEGTR 483 (542)
T ss_pred CCeEEEEEecCch
Confidence 9999999988843
No 56
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.4e-34 Score=305.31 Aligned_cols=298 Identities=18% Similarity=0.200 Sum_probs=206.1
Q ss_pred chHhHHHHHHHHhcC------CEEEEEcCCCCcHHHH-HHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCC---
Q 012322 6 ILQYEETIVETVEQN------PVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV--- 75 (466)
Q Consensus 6 i~~~q~~i~~~i~~~------~~~ii~apTGsGKTt~-~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~--- 75 (466)
..+.|.+.++.+.++ .+.+++||||||||.. +.+++... ..+.+++++.|+++++.|.++.+.+.+..
T Consensus 452 ~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al--~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i 529 (926)
T TIGR00580 452 ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAV--LDGKQVAVLVPTTLLAQQHFETFKERFANFPV 529 (926)
T ss_pred CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHH--HhCCeEEEEeCcHHHHHHHHHHHHHHhccCCc
Confidence 356788888888764 6889999999999933 33333222 23578999999999999999988776542
Q ss_pred ccCCeeeeeEeecc------ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc
Q 012322 76 RLGEEVGYAIRFED------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (466)
Q Consensus 76 ~~~~~~g~~~~~~~------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~ 149 (466)
.+....|.....+. ....+.+|+++|+..+ .....+.+++++||||+|. +.... +..++..+.
T Consensus 530 ~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahr--fgv~~-----~~~L~~~~~ 598 (926)
T TIGR00580 530 TIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQR--FGVKQ-----KEKLKELRT 598 (926)
T ss_pred EEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeecccc--cchhH-----HHHHHhcCC
Confidence 22111121110010 1123578999999432 3344688999999999993 22221 222233334
Q ss_pred CceEEEEecccChhHHHhhc-C--CCCeEeeC-CCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHH
Q 012322 150 KLKILITSATLDGEKVSKFF-S--NCPTLNVP-GKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (466)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~~~-~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~ 225 (466)
+.++++||||+.+..+...+ + +...+..+ ....++...+..... . .....+.... ..+++++||||++++
T Consensus 599 ~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~---~i~~~i~~el--~~g~qv~if~n~i~~ 672 (926)
T TIGR00580 599 SVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-E---LVREAIRREL--LRGGQVFYVHNRIES 672 (926)
T ss_pred CCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-H---HHHHHHHHHH--HcCCeEEEEECCcHH
Confidence 78999999999776654332 2 23333332 223455544432211 1 1111222222 235799999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCccccee
Q 012322 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (466)
Q Consensus 226 ~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~ 305 (466)
++.+++.|++.+ ++..+..+||+|++++|.+++++|++|+.+|||||+++|+|||+|++++||..+.++
T Consensus 673 ~e~l~~~L~~~~--------p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~--- 741 (926)
T TIGR00580 673 IEKLATQLRELV--------PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK--- 741 (926)
T ss_pred HHHHHHHHHHhC--------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC---
Confidence 999999998763 467899999999999999999999999999999999999999999999999755432
Q ss_pred ecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCcc
Q 012322 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (466)
Q Consensus 306 ~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 347 (466)
.+.++|.||+||+||. ..|.||.++++.
T Consensus 742 --------------~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 742 --------------FGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred --------------CCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 1345788999999999 789999998654
No 57
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=6.8e-36 Score=271.13 Aligned_cols=304 Identities=20% Similarity=0.225 Sum_probs=222.6
Q ss_pred HHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhc--------CcCCCcEEEEeCchhHHHHHHHHHHHHHh------C---
Q 012322 14 VETVEQNPVVVVIGETGSGKS--TQLSQILHRH--------GYTKSGIIGVTQPRRVAAVSVARRVAQEL------G--- 74 (466)
Q Consensus 14 ~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~--------~~~~~~~i~~~~p~~~l~~~~~~~~~~~~------~--- 74 (466)
+..+.+|++.+-+|-|||||| ..+|.++... ....|..-++++|.|+++.|.+.-+.++. |
T Consensus 201 lPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~ 280 (610)
T KOG0341|consen 201 LPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPE 280 (610)
T ss_pred cceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 456778999999999999999 5566655433 12356788999999999999877654332 1
Q ss_pred CccCCeeeee-Eeec-cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCc
Q 012322 75 VRLGEEVGYA-IRFE-DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (466)
Q Consensus 75 ~~~~~~~g~~-~~~~-~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~ 151 (466)
.+....+|.. ++.. .......+|+++|||+|...+.... .+.-++++.+|||+ |.+|.+|-.+ ++.+....+...
T Consensus 281 lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEdd-ir~iF~~FK~QR 358 (610)
T KOG0341|consen 281 LRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDD-IRTIFSFFKGQR 358 (610)
T ss_pred hhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhh-HHHHHHHHhhhh
Confidence 1222223311 1111 1124578999999999999886554 67788999999999 9999998777 788888887788
Q ss_pred eEEEEecccChhHHHhhcCC----CCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHH-HhhcCCCCCEEEecCCHHHH
Q 012322 152 KILITSATLDGEKVSKFFSN----CPTLNVPGKLYPVEILHSKERPTSYLESALKTAID-IHVREPEGDVLIFMTGQDDI 226 (466)
Q Consensus 152 ~ii~~SAT~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lVF~~t~~~~ 226 (466)
|.+++|||+|.. ++.|... +..+.+. +.-..+... ....+|+....+.+.. .+..+...++|||+..+.++
T Consensus 359 QTLLFSATMP~K-IQ~FAkSALVKPvtvNVG-RAGAAsldV--iQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DV 434 (610)
T KOG0341|consen 359 QTLLFSATMPKK-IQNFAKSALVKPVTVNVG-RAGAASLDV--IQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADV 434 (610)
T ss_pred heeeeeccccHH-HHHHHHhhcccceEEecc-cccccchhH--HHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccCh
Confidence 999999999854 4444332 2222222 211100000 0112333322222211 12334456999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceee
Q 012322 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (466)
Q Consensus 227 ~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~ 306 (466)
..++++|--. ++.++.+|||-.+++|...++.|+.|+.+|+||||+++.|+|+|++.+||||++|.
T Consensus 435 D~IhEYLLlK----------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~---- 500 (610)
T KOG0341|consen 435 DDIHEYLLLK----------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPE---- 500 (610)
T ss_pred HHHHHHHHHc----------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChH----
Confidence 9999999765 89999999999999999999999999999999999999999999999999998876
Q ss_pred cCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 307 ~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
..++|+||+||+||. ..|.+-.+.++.....
T Consensus 501 --------------eIENYVHRIGRTGRsg~~GiATTfINK~~~es 532 (610)
T KOG0341|consen 501 --------------EIENYVHRIGRTGRSGKTGIATTFINKNQEES 532 (610)
T ss_pred --------------HHHHHHHHhcccCCCCCcceeeeeecccchHH
Confidence 566999999999999 7899999988876554
No 58
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.4e-34 Score=297.72 Aligned_cols=298 Identities=16% Similarity=0.199 Sum_probs=204.4
Q ss_pred CchHhHHHHHHHHhcC------CEEEEEcCCCCcHHH-HHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHh---C
Q 012322 5 PILQYEETIVETVEQN------PVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---G 74 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~------~~~ii~apTGsGKTt-~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~---~ 74 (466)
.....|+++++.+..+ .+.+++||||||||. .+.+++... ..+.+++++.|+++++.|+++.+.+.+ +
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~ 338 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPLG 338 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 4678899998888876 378999999999993 333333222 246789999999999999999887655 3
Q ss_pred CccCCeeeeeEeec------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 75 VRLGEEVGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 75 ~~~~~~~g~~~~~~------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
..++...|.....+ .....+.+|+++|++.+.. ...+.+++++||||+| +. ..... ..+. ...
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~H-rf-g~~qr----~~l~-~~~ 407 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQH-RF-GVEQR----LALR-EKG 407 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechh-hh-hHHHH----HHHH-hcC
Confidence 44433333221100 1123468999999986643 2357899999999999 32 22211 1122 223
Q ss_pred cCceEEEEecccChhHHH-hhcCCCCeEee---CCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHH
Q 012322 149 SKLKILITSATLDGEKVS-KFFSNCPTLNV---PGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (466)
Q Consensus 149 ~~~~ii~~SAT~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~ 224 (466)
.+.++++||||+.+..+. ..+++..+..+ +....++...+.... .....+..+.... ..+++++||||..+
T Consensus 408 ~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~---~~~~~~~~i~~~~--~~g~q~~v~~~~ie 482 (681)
T PRK10917 408 ENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDS---RRDEVYERIREEI--AKGRQAYVVCPLIE 482 (681)
T ss_pred CCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcc---cHHHHHHHHHHHH--HcCCcEEEEEcccc
Confidence 367899999999766543 33333332222 222234444433322 2222333333322 34569999999654
Q ss_pred --------HHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEE
Q 012322 225 --------DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVI 296 (466)
Q Consensus 225 --------~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI 296 (466)
.++.+++.|.+.+ ++..+..+||+|++++|.++++.|++|+.+|||||+++++|||+|++++||
T Consensus 483 ~s~~l~~~~~~~~~~~L~~~~--------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VI 554 (681)
T PRK10917 483 ESEKLDLQSAEETYEELQEAF--------PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMV 554 (681)
T ss_pred cccchhHHHHHHHHHHHHHHC--------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEE
Confidence 4566677776653 247799999999999999999999999999999999999999999999999
Q ss_pred eCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecC
Q 012322 297 DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (466)
Q Consensus 297 ~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~ 345 (466)
+++.++ .+.+++.||+||+||. .+|.||.+++
T Consensus 555 i~~~~r-----------------~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 555 IENAER-----------------FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EeCCCC-----------------CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 866543 1345788999999999 6899999985
No 59
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.4e-34 Score=308.61 Aligned_cols=298 Identities=17% Similarity=0.179 Sum_probs=203.6
Q ss_pred chHhHHHHHHHHhcC------CEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCC---c
Q 012322 6 ILQYEETIVETVEQN------PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---R 76 (466)
Q Consensus 6 i~~~q~~i~~~i~~~------~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~---~ 76 (466)
..+.|.++++.+..+ .+++++|+||||||.++...+... ...+.++++++|+++++.|+++.+.+.++. .
T Consensus 601 ~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~-~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~ 679 (1147)
T PRK10689 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 (1147)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCce
Confidence 456788888888776 789999999999994332222211 124678999999999999999988765532 2
Q ss_pred cCCeeeeeEeeccc------cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 77 LGEEVGYAIRFEDR------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 77 ~~~~~g~~~~~~~~------~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
+....|.....+.. .....+|+++||+.+. ....+.+++++||||+|. . .... +..++..+.+
T Consensus 680 i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~~v~~~~L~lLVIDEahr-f-G~~~-----~e~lk~l~~~ 748 (1147)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----SDVKWKDLGLLIVDEEHR-F-GVRH-----KERIKAMRAD 748 (1147)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----CCCCHhhCCEEEEechhh-c-chhH-----HHHHHhcCCC
Confidence 21122211111111 1245789999997442 333567899999999994 2 2211 1222333458
Q ss_pred ceEEEEecccChhHHH---hhcCCCCeEeeCCC-cCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHH
Q 012322 151 LKILITSATLDGEKVS---KFFSNCPTLNVPGK-LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (466)
Q Consensus 151 ~~ii~~SAT~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~ 226 (466)
.+++++|||+.++.+. ..+.+...+..+.. ..++.......... .....+..... .+++++||||+++.+
T Consensus 749 ~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~----~~k~~il~el~--r~gqv~vf~n~i~~i 822 (1147)
T PRK10689 749 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSL----VVREAILREIL--RGGQVYYLYNDVENI 822 (1147)
T ss_pred CcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcH----HHHHHHHHHHh--cCCeEEEEECCHHHH
Confidence 8999999998776543 23344445544332 23444333221111 11122222222 357999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceee
Q 012322 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (466)
Q Consensus 227 ~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~ 306 (466)
+.+++.|.+.+ ++..+..+||+|++++|.+++++|++|+.+|||||+++++|||+|++++||...
T Consensus 823 e~la~~L~~~~--------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~------- 887 (1147)
T PRK10689 823 QKAAERLAELV--------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER------- 887 (1147)
T ss_pred HHHHHHHHHhC--------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEec-------
Confidence 99999998874 366788899999999999999999999999999999999999999999999311
Q ss_pred cCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCc
Q 012322 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPS 346 (466)
Q Consensus 307 ~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~ 346 (466)
+. ..+.++|.||+||+||. ..|.||.+++.
T Consensus 888 -ad---------~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 888 -AD---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred -CC---------CCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 10 01234789999999999 78999999864
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.6e-33 Score=275.33 Aligned_cols=291 Identities=20% Similarity=0.209 Sum_probs=184.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH-hcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeE------e-----ecc
Q 012322 22 VVVVIGETGSGKSTQLSQILH-RHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI------R-----FED 89 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~-~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~------~-----~~~ 89 (466)
+++|.||||||||.....++. ......+.+++++.|+++++.|+++++.+.++...+...+... . ...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 378999999999954443333 2222345689999999999999999998887654332222110 0 000
Q ss_pred ---------ccCccceEEEcCHHHHHHHHhhCC-------CCCCCcEEEecCCCccccCH--HHHHHHHHHHHHhhhcCc
Q 012322 90 ---------RTSERTLIKYLTDGVLLREILSNP-------DLSPYSVIILDEAHERSLNT--DILLGLVKRLVNLRASKL 151 (466)
Q Consensus 90 ---------~~~~~~~i~~~T~g~l~~~~~~~~-------~l~~~~~iIiDEah~~~~~~--~~~~~~l~~i~~~~~~~~ 151 (466)
......+|+++|++++...+.... ..-..+++|+||+|. ..+. +++...++.+. ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~-~~~~~~~~l~~~l~~l~---~~~~ 156 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHF-YDEYTLALILAVLEVLK---DNDV 156 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCC-CCHHHHHHHHHHHHHHH---HcCC
Confidence 001236799999999887765421 111237999999994 4332 22333222222 2478
Q ss_pred eEEEEecccChhHHHhhcCCCCeEeeCC--CcCc---ee-eee-cCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHH
Q 012322 152 KILITSATLDGEKVSKFFSNCPTLNVPG--KLYP---VE-ILH-SKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (466)
Q Consensus 152 ~ii~~SAT~~~~~~~~~~~~~~~~~~~~--~~~~---~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~ 224 (466)
++++||||++ +.+.+++.......... ...+ .. ..+ ............+..++... ..++++||||+|++
T Consensus 157 ~~i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~t~~ 233 (358)
T TIGR01587 157 PILLMSATLP-KFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFI--KKGGKIAIIVNTVD 233 (358)
T ss_pred CEEEEecCch-HHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHh--hCCCeEEEEECCHH
Confidence 9999999998 44555554321111000 0000 00 000 00000011112222222222 34579999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhc----ccCCCCCCcceEEEEecccccccccCCeEEEEeCCc
Q 012322 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVR----VFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (466)
Q Consensus 225 ~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~----~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~ 300 (466)
+++.+++.|.+.. ....+..+||++++.+|.+ +++.|++|+.+|||||+++++|+|+| +++||+..
T Consensus 234 ~~~~~~~~L~~~~--------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~- 303 (358)
T TIGR01587 234 RAQEFYQQLKENA--------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITEL- 303 (358)
T ss_pred HHHHHHHHHHhhc--------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcC-
Confidence 9999999998762 2346899999999999976 47899999999999999999999997 77777632
Q ss_pred ccceeecCCCCccccceeeecHHHHHHhccccCCCC--C---CeEEEecCccc
Q 012322 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR--P---GKCYRLYPSTV 348 (466)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~--~---G~~~~l~~~~~ 348 (466)
.+..+|+||+||+||.+ . |..|.++...+
T Consensus 304 -------------------~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 304 -------------------APIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred -------------------CCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 24568999999999973 2 36777765443
No 61
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.5e-33 Score=289.17 Aligned_cols=300 Identities=15% Similarity=0.179 Sum_probs=200.6
Q ss_pred chHhHHHHHHHHhcC------CEEEEEcCCCCcHHHHHH-HHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhC---C
Q 012322 6 ILQYEETIVETVEQN------PVVVVIGETGSGKSTQLS-QILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (466)
Q Consensus 6 i~~~q~~i~~~i~~~------~~~ii~apTGsGKTt~~~-~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~---~ 75 (466)
....|+++++.+..+ .+.+++||||||||..+. +++... ..+.+++++.|+++++.|+++.+.+.++ .
T Consensus 236 lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~--~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi 313 (630)
T TIGR00643 236 LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAI--EAGYQVALMAPTEILAEQHYNSLRNLLAPLGI 313 (630)
T ss_pred CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEECCHHHHHHHHHHHHHHHhcccCc
Confidence 567788888888765 357999999999994332 222222 2466899999999999999998876653 4
Q ss_pred ccCCeeeeeEee------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc
Q 012322 76 RLGEEVGYAIRF------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (466)
Q Consensus 76 ~~~~~~g~~~~~------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~ 149 (466)
.+....|..... ......+.+|+++|++.+.. ...+.+++++||||+|. +....... +....... .
T Consensus 314 ~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~--fg~~qr~~-l~~~~~~~-~ 385 (630)
T TIGR00643 314 EVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHR--FGVEQRKK-LREKGQGG-F 385 (630)
T ss_pred EEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhh--ccHHHHHH-HHHhcccC-C
Confidence 433333321111 11123457999999987643 33578899999999993 22222221 21111111 1
Q ss_pred CceEEEEecccChhHHHh-hcCCCCeE---eeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCH--
Q 012322 150 KLKILITSATLDGEKVSK-FFSNCPTL---NVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ-- 223 (466)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~-- 223 (466)
..++++||||+.+..+.. .+++.... ..+....++...+.... .....+..+.... ..+++++|||+..
T Consensus 386 ~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~---~~~~~~~~i~~~l--~~g~q~~v~~~~i~~ 460 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHD---EKDIVYEFIEEEI--AKGRQAYVVYPLIEE 460 (630)
T ss_pred CCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcc---hHHHHHHHHHHHH--HhCCcEEEEEccccc
Confidence 578999999986655432 22222211 12222334444443222 1222333222221 2356899999976
Q ss_pred ------HHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEe
Q 012322 224 ------DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVID 297 (466)
Q Consensus 224 ------~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~ 297 (466)
..++.+++.|.+.+ .+..+..+||+|++++|.++++.|++|+.+|||||+++|+|||+|++++||+
T Consensus 461 s~~~~~~~a~~~~~~L~~~~--------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi 532 (630)
T TIGR00643 461 SEKLDLKAAEALYERLKKAF--------PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI 532 (630)
T ss_pred cccchHHHHHHHHHHHHhhC--------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE
Confidence 45666677776543 3678999999999999999999999999999999999999999999999998
Q ss_pred CCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecC
Q 012322 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (466)
Q Consensus 298 ~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~ 345 (466)
++.++ .+.+++.||+||+||. .+|.|+.++.
T Consensus 533 ~~~~r-----------------~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 533 EDAER-----------------FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred eCCCc-----------------CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 66443 1356889999999998 6999999983
No 62
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=262.51 Aligned_cols=315 Identities=18% Similarity=0.196 Sum_probs=209.0
Q ss_pred hHhHHHHHHHH----h-----cCCEEEEEcCCCCcHH--HHHHHHHHhcCc-CCCcEEEEeCchhHHHHHHHHHHHHHhC
Q 012322 7 LQYEETIVETV----E-----QNPVVVVIGETGSGKS--TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELG 74 (466)
Q Consensus 7 ~~~q~~i~~~i----~-----~~~~~ii~apTGsGKT--t~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 74 (466)
++.|..++..+ . ..++++|.|||||||| +.+|..-..... ...-+.+++.|++.++.|++..+.+...
T Consensus 161 FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~ 240 (620)
T KOG0350|consen 161 FPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNS 240 (620)
T ss_pred cchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhcc
Confidence 44565555555 2 3578899999999999 455543333222 2345889999999999999998765442
Q ss_pred CccCCeeeeeEeeccc-----------cCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 75 VRLGEEVGYAIRFEDR-----------TSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 75 ~~~~~~~g~~~~~~~~-----------~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
..+..++......+- .....+|+++|||+|..++.+.+ .+.+++++|||||+ |.++..|. .++.
T Consensus 241 -~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ-~Wl~ 317 (620)
T KOG0350|consen 241 -GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQ-EWLD 317 (620)
T ss_pred -CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHH-HHHH
Confidence 223333322211110 11235899999999999997554 79999999999999 77766552 2222
Q ss_pred HHHHhhh----------------------------------cCceEEEEeccc--ChhHHHhhcCCCC-eEeeCCC---c
Q 012322 142 RLVNLRA----------------------------------SKLKILITSATL--DGEKVSKFFSNCP-TLNVPGK---L 181 (466)
Q Consensus 142 ~i~~~~~----------------------------------~~~~ii~~SAT~--~~~~~~~~~~~~~-~~~~~~~---~ 181 (466)
.+....+ .....+.+|||+ ++..+.++--+.| .+.+.+. .
T Consensus 318 ~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~r 397 (620)
T KOG0350|consen 318 TVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGR 397 (620)
T ss_pred HHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeeccccee
Confidence 2222111 012255667776 3444554433322 3333221 0
Q ss_pred C--ceeeeecCC-CCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCC
Q 012322 182 Y--PVEILHSKE-RPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLP 258 (466)
Q Consensus 182 ~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~ 258 (466)
| |........ ....+.. ..+..........++|+|+++.+.+.+++..|.-.+.+ ...++..|.|+++
T Consensus 398 yslp~~l~~~~vv~~~~~kp---l~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~------~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 398 YSLPSSLSHRLVVTEPKFKP---LAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS------DNFKVSEFTGQLN 468 (620)
T ss_pred eecChhhhhceeecccccch---HhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc------ccchhhhhhhhhh
Confidence 1 100000000 0000111 11222333345579999999999999999999855443 3566777999999
Q ss_pred HHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CC
Q 012322 259 PEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RP 337 (466)
Q Consensus 259 ~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~ 337 (466)
...|.+.++.|..|.+++|||+|+++||||+.+|+.||+|+.|. +.-+|+||+||++|. +.
T Consensus 469 ~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~------------------~~ktyVHR~GRTARAgq~ 530 (620)
T KOG0350|consen 469 GKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPA------------------SDKTYVHRAGRTARAGQD 530 (620)
T ss_pred HHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCc------------------hhhHHHHhhcccccccCC
Confidence 99999999999999999999999999999999999999977654 666999999999999 78
Q ss_pred CeEEEecCccchhh
Q 012322 338 GKCYRLYPSTVYHD 351 (466)
Q Consensus 338 G~~~~l~~~~~~~~ 351 (466)
|.||.+..+++...
T Consensus 531 G~a~tll~~~~~r~ 544 (620)
T KOG0350|consen 531 GYAITLLDKHEKRL 544 (620)
T ss_pred ceEEEeeccccchH
Confidence 99999998776543
No 63
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.7e-33 Score=286.51 Aligned_cols=294 Identities=16% Similarity=0.160 Sum_probs=187.1
Q ss_pred CchHhHHHHHHHHhcCC-EEEEEcCCCCcHHHHHHHHHHhcCc--CCCcEEEEeCchhHHHHHHHHHHHHHhC-------
Q 012322 5 PILQYEETIVETVEQNP-VVVVIGETGSGKSTQLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQELG------- 74 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~-~~ii~apTGsGKTt~~~~~~~~~~~--~~~~~i~~~~p~~~l~~~~~~~~~~~~~------- 74 (466)
.-+++|++++..+..|+ ++++.+|||||||..+..++..... ....++++++|+|+++.|+++.+.+...
T Consensus 15 ~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~ 94 (844)
T TIGR02621 15 SPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPE 94 (844)
T ss_pred CCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccch
Confidence 35789999999999998 5777899999999543322222211 1233677788999999999887643321
Q ss_pred -------------------CccCCeeeeeEeec--cccCccceEEEcCHHHHHHHHhh-------------CCCCCCCcE
Q 012322 75 -------------------VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILS-------------NPDLSPYSV 120 (466)
Q Consensus 75 -------------------~~~~~~~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~-------------~~~l~~~~~ 120 (466)
+++....|...... ......++|+++|...+.+..+. ...+.+.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~ 174 (844)
T TIGR02621 95 VEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDAL 174 (844)
T ss_pred hhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceE
Confidence 11111122111001 11234578999997655443331 113688999
Q ss_pred EEecCCCccccCHHHHHHHHHHHHHhh--hc---CceEEEEecccChhH--HH-hhcCCCCeEeeCCCcCcee--eeecC
Q 012322 121 IILDEAHERSLNTDILLGLVKRLVNLR--AS---KLKILITSATLDGEK--VS-KFFSNCPTLNVPGKLYPVE--ILHSK 190 (466)
Q Consensus 121 iIiDEah~~~~~~~~~~~~l~~i~~~~--~~---~~~ii~~SAT~~~~~--~~-~~~~~~~~~~~~~~~~~~~--~~~~~ 190 (466)
||+|||| +++.|... ++.+.+.. +. +.|+++||||++.+. +. .+..+...+.+..+....+ ..+..
T Consensus 175 LVLDEAD---Ld~gF~~~-l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~ 250 (844)
T TIGR02621 175 IVHDEAH---LEPAFQEL-LKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVP 250 (844)
T ss_pred EEEehhh---hccccHHH-HHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEe
Confidence 9999999 34444443 55555532 22 268999999997542 32 3333333333322221111 11211
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHh-----cc
Q 012322 191 ERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQV-----RV 265 (466)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~-----~~ 265 (466)
..........+..+.... ....+++||||||++.|+.+++.|.+. ++ ..+||+|++.+|. ++
T Consensus 251 v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~----------g~--~lLHG~m~q~dR~~~~~~~i 317 (844)
T TIGR02621 251 PSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKE----------KF--ELLTGTLRGAERDDLVKKEI 317 (844)
T ss_pred cChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhc----------CC--eEeeCCCCHHHHhhHHHHHH
Confidence 121122222233332222 345679999999999999999999865 33 7899999999999 77
Q ss_pred cCCCCC----Cc-------ceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCC
Q 012322 266 FSPPPP----NC-------RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR 334 (466)
Q Consensus 266 ~~~f~~----g~-------~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR 334 (466)
++.|++ |+ .+|||||+++|+||||+. ++||+.. .+.++|+||+||+||
T Consensus 318 l~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~--------------------aP~esyIQRiGRtgR 376 (844)
T TIGR02621 318 FNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDL--------------------APFESMQQRFGRVNR 376 (844)
T ss_pred HHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECC--------------------CCHHHHHHHhcccCC
Confidence 888876 43 689999999999999996 7777522 135799999999999
Q ss_pred CC
Q 012322 335 TR 336 (466)
Q Consensus 335 ~~ 336 (466)
.+
T Consensus 377 ~G 378 (844)
T TIGR02621 377 FG 378 (844)
T ss_pred CC
Confidence 83
No 64
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-33 Score=259.42 Aligned_cols=308 Identities=18% Similarity=0.178 Sum_probs=223.8
Q ss_pred hHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcC------cCCCcEEEEeCchhHHHHHHHHHHHHH---hC--C
Q 012322 9 YEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQE---LG--V 75 (466)
Q Consensus 9 ~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~------~~~~~~i~~~~p~~~l~~~~~~~~~~~---~~--~ 75 (466)
.|+..+.-+.+|++++..|.|||||| +++|.+-.... ...+...++++|++++++|+++.+.+. ++ +
T Consensus 45 IQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~l 124 (569)
T KOG0346|consen 45 IQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDL 124 (569)
T ss_pred hhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhh
Confidence 57777888899999999999999999 44554333221 123457889999999999998876432 22 1
Q ss_pred ccCCee-eee-EeeccccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCc
Q 012322 76 RLGEEV-GYA-IRFEDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (466)
Q Consensus 76 ~~~~~~-g~~-~~~~~~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~ 151 (466)
+..... ... ..........++|+++||+.+++++..+. .+..++++|+|||+ ..+.-++..+ ++.+....|+..
T Consensus 125 r~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEAD-LllsfGYeed-lk~l~~~LPr~~ 202 (569)
T KOG0346|consen 125 RAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEAD-LLLSFGYEED-LKKLRSHLPRIY 202 (569)
T ss_pred hhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhh-hhhhcccHHH-HHHHHHhCCchh
Confidence 111111 000 00112234678999999999999997776 67889999999999 3555555555 788888888899
Q ss_pred eEEEEecccChh--HHHhhcCC-CCeEeeCCCcCc----eeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHH
Q 012322 152 KILITSATLDGE--KVSKFFSN-CPTLNVPGKLYP----VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (466)
Q Consensus 152 ~ii~~SAT~~~~--~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~ 224 (466)
|.++||||++.+ .+.+.+.. +.++.......+ +..++......+.+. .+-.++. ..--.|++|||+||.+
T Consensus 203 Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl-llyallK--L~LI~gKsliFVNtId 279 (569)
T KOG0346|consen 203 QCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL-LLYALLK--LRLIRGKSLIFVNTID 279 (569)
T ss_pred hheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH-HHHHHHH--HHHhcCceEEEEechh
Confidence 999999999664 46666554 444555443333 222222222222211 1111221 2234689999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecc----------------------
Q 012322 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI---------------------- 282 (466)
Q Consensus 225 ~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~---------------------- 282 (466)
.|.++.-.|... ++....++|.||.+.|.-+++.|..|..+|++|||.
T Consensus 280 r~YrLkLfLeqF----------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kn 349 (569)
T KOG0346|consen 280 RCYRLKLFLEQF----------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKN 349 (569)
T ss_pred hhHHHHHHHHHh----------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCC
Confidence 999999999887 888889999999999999999999999999999992
Q ss_pred -------------cccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 283 -------------AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 283 -------------~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
.++|||+.+|..|+||++|. +..+|+||+||++|. .+|.+..++.+..
T Consensus 350 dkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~------------------t~~sYIHRvGRTaRg~n~GtalSfv~P~e 411 (569)
T KOG0346|consen 350 DKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE------------------TVTSYIHRVGRTARGNNKGTALSFVSPKE 411 (569)
T ss_pred ccccccccCchhchhccccchheeeeeecCCCC------------------chHHHHHhccccccCCCCCceEEEecchH
Confidence 34899999999999999987 555999999999999 8999998886654
Q ss_pred h
Q 012322 349 Y 349 (466)
Q Consensus 349 ~ 349 (466)
.
T Consensus 412 ~ 412 (569)
T KOG0346|consen 412 E 412 (569)
T ss_pred H
Confidence 4
No 65
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=272.91 Aligned_cols=309 Identities=20% Similarity=0.227 Sum_probs=211.4
Q ss_pred hHHHHHHHHhcC-CEEEEEcCCCCcHH-HHHHHHHHhcCc--------------CCCcEEEEeCchhHHHHHHHHHHH--
Q 012322 9 YEETIVETVEQN-PVVVVIGETGSGKS-TQLSQILHRHGY--------------TKSGIIGVTQPRRVAAVSVARRVA-- 70 (466)
Q Consensus 9 ~q~~i~~~i~~~-~~~ii~apTGsGKT-t~~~~~~~~~~~--------------~~~~~i~~~~p~~~l~~~~~~~~~-- 70 (466)
.|.-.+.+...| .+++-.|.|||||| .+..+++..... ......+++.|+|+++.|+.+.+.
T Consensus 207 IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai 286 (731)
T KOG0347|consen 207 IQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAI 286 (731)
T ss_pred chhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHh
Confidence 344455555555 67888999999999 444444441110 112248899999999999988764
Q ss_pred -HHhCCccCCeeeeeEe--eccccCccceEEEcCHHHHHHHHhhCC----CCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 71 -QELGVRLGEEVGYAIR--FEDRTSERTLIKYLTDGVLLREILSNP----DLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 71 -~~~~~~~~~~~g~~~~--~~~~~~~~~~i~~~T~g~l~~~~~~~~----~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
...++.+...+|.... .+......++|+++|||+|..++..+. .+.+++++|+||++ |++..+.+.+ +..+
T Consensus 287 ~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD-RmvekghF~E-ls~l 364 (731)
T KOG0347|consen 287 AEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD-RMVEKGHFEE-LSKL 364 (731)
T ss_pred ccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-HHhhhccHHH-HHHH
Confidence 4445555555552211 112234578999999999998885443 57889999999999 8887776655 3333
Q ss_pred HHhh-----hcCceEEEEecccChhHHHhhc---CC-C-------------CeEeeCCCcCceeeeecCCCCCchHHHHH
Q 012322 144 VNLR-----ASKLKILITSATLDGEKVSKFF---SN-C-------------PTLNVPGKLYPVEILHSKERPTSYLESAL 201 (466)
Q Consensus 144 ~~~~-----~~~~~ii~~SAT~~~~~~~~~~---~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (466)
++.. +...|.+++|||++-......- .. . ..+.+.+.+ .++.. .+.........
T Consensus 365 L~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp---kiiD~-t~q~~ta~~l~ 440 (731)
T KOG0347|consen 365 LKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKP---KIIDL-TPQSATASTLT 440 (731)
T ss_pred HHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCC---eeEec-CcchhHHHHHH
Confidence 3322 2467899999998632211100 00 0 001111111 11111 01111111111
Q ss_pred HHHHHH-----------hhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCC
Q 012322 202 KTAIDI-----------HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPP 270 (466)
Q Consensus 202 ~~~~~~-----------~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~ 270 (466)
+..+.. ....-+|++|||||+.+.+.+++-+|... ++...++|+.|.+.+|.+.++.|+
T Consensus 441 Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L----------~i~p~~LHA~M~QKqRLknLEkF~ 510 (731)
T KOG0347|consen 441 ESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL----------DIPPLPLHASMIQKQRLKNLEKFK 510 (731)
T ss_pred HHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc----------CCCCchhhHHHHHHHHHHhHHHHh
Confidence 211111 12334699999999999999999999876 888899999999999999999999
Q ss_pred CCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 271 PNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 271 ~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
+...-||+|||+|+||+|||+|.+||||-.|+ +...|+||.||+.|. ..|..+.++.+.+.
T Consensus 511 ~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPr------------------tseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 511 QSPSGVLIATDVAARGLDIPGVQHVIHYQVPR------------------TSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred cCCCeEEEeehhhhccCCCCCcceEEEeecCC------------------ccceeEecccccccccCCCeEEEEeChHHh
Confidence 99999999999999999999999999988887 444889999999999 78999999988765
Q ss_pred hh
Q 012322 350 HD 351 (466)
Q Consensus 350 ~~ 351 (466)
..
T Consensus 573 ~~ 574 (731)
T KOG0347|consen 573 GP 574 (731)
T ss_pred HH
Confidence 43
No 66
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-33 Score=257.86 Aligned_cols=306 Identities=18% Similarity=0.170 Sum_probs=209.7
Q ss_pred hHHH-HHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeE
Q 012322 9 YEET-IVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI 85 (466)
Q Consensus 9 ~q~~-i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 85 (466)
.|+. +...+..+.++.++.|||+||| +++|.++. ++..+++.|..++..++...+.+ +...+........
T Consensus 24 LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSKlS 96 (641)
T KOG0352|consen 24 LQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQIDHLKR-LKVPCESLNSKLS 96 (641)
T ss_pred HHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHHHHHh-cCCchhHhcchhh
Confidence 3444 5556778889999999999999 78888776 44788999999999988887633 2222111111000
Q ss_pred ee--------ccccCccceEEEcCHHHH-----HHHHhhCCCCCCCcEEEecCCCc-cccCHHHHHHH--HHHHHHhhhc
Q 012322 86 RF--------EDRTSERTLIKYLTDGVL-----LREILSNPDLSPYSVIILDEAHE-RSLNTDILLGL--VKRLVNLRAS 149 (466)
Q Consensus 86 ~~--------~~~~~~~~~i~~~T~g~l-----~~~~~~~~~l~~~~~iIiDEah~-~~~~~~~~~~~--l~~i~~~~~~ 149 (466)
.. -.......+++|.||++- +..+..-..-..++++++||||| .-+..||..++ +-.+....+
T Consensus 97 t~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~- 175 (641)
T KOG0352|consen 97 TVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP- 175 (641)
T ss_pred HHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCC-
Confidence 00 112345678999999863 33333223445678999999999 22333333332 234444454
Q ss_pred CceEEEEecccChhHHHhhcC----CCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhh-------------cCC
Q 012322 150 KLKILITSATLDGEKVSKFFS----NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHV-------------REP 212 (466)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 212 (466)
+..-+++|||.+++.-++.+. ..|+-.+....+.-+.+|.. .-.+++.+.+..+.+... +.-
T Consensus 176 ~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~-~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~ 254 (641)
T KOG0352|consen 176 GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDN-HMKSFITDCLTVLADFSSSNLGKHEKASQNKKTF 254 (641)
T ss_pred CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHH-HHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCc
Confidence 889999999998865444432 22322222222222222211 111112222222211110 112
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCe
Q 012322 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGV 292 (466)
Q Consensus 213 ~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v 292 (466)
.|..||||.||++|++++-.|... +++...||+||...+|.++.+.|.++++.||+||..++||||.|+|
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~~----------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~V 324 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEIA----------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDV 324 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhhc----------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcce
Confidence 468899999999999999999876 8999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 293 VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 293 ~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
++|||+..++ +.+.|.|..|||||+ .+..|-..|++++.+.
T Consensus 325 RFViHW~~~q------------------n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 325 RFVIHWSPSQ------------------NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred eEEEecCchh------------------hhHHHHHhccccccCCCccceeeeecccchHH
Confidence 9999977655 778999999999999 6889999999988765
No 67
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=273.71 Aligned_cols=322 Identities=20% Similarity=0.261 Sum_probs=211.9
Q ss_pred CCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHh-cCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCee
Q 012322 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (466)
Q Consensus 3 ~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~-~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~ 81 (466)
++++..||+++.+... |++++|++|||+|||..+..++.. ..+.++.++++.+|++-++.|+...+. .++.... ..
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~-~~~~~~~-~T 136 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFS-IYLIPYS-VT 136 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHh-hccCccc-ce
Confidence 6899999999999988 999999999999999665555543 344556899999999999999885543 3333311 11
Q ss_pred eeeEeecc-----ccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEE
Q 012322 82 GYAIRFED-----RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (466)
Q Consensus 82 g~~~~~~~-----~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (466)
+....... ..-...++.++||+.+.+-+.+.. .++.+.++|||||| +.......-.+++.++.....+.|++
T Consensus 137 ~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~qIL 215 (746)
T KOG0354|consen 137 GQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGNQIL 215 (746)
T ss_pred eeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccccEE
Confidence 11111000 011357899999999988775443 36789999999999 77776666666777776665455999
Q ss_pred EEecccCh--hHHHhhcCCCCe-EeeC--------------CCcCceee-------------------------------
Q 012322 155 ITSATLDG--EKVSKFFSNCPT-LNVP--------------GKLYPVEI------------------------------- 186 (466)
Q Consensus 155 ~~SAT~~~--~~~~~~~~~~~~-~~~~--------------~~~~~~~~------------------------------- 186 (466)
++|||+.. +.+.++..+-.. +.+. -...|++.
T Consensus 216 gLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~ 295 (746)
T KOG0354|consen 216 GLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEIS 295 (746)
T ss_pred EEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccc
Confidence 99999843 233333211000 0000 00000000
Q ss_pred ----eecC------------CCCC-c------------------------------------------------------
Q 012322 187 ----LHSK------------ERPT-S------------------------------------------------------ 195 (466)
Q Consensus 187 ----~~~~------------~~~~-~------------------------------------------------------ 195 (466)
.|.. .+.. .
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~ 375 (746)
T KOG0354|consen 296 DKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRN 375 (746)
T ss_pred cccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHH
Confidence 0000 0000 0
Q ss_pred --------------------hHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhh-ccCCCCCCeEEEeec
Q 012322 196 --------------------YLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS-LDEGSCMDAVILPLH 254 (466)
Q Consensus 196 --------------------~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~-~~~~~~~~~~v~~~h 254 (466)
.+......+.+.....+..++|||+.+|+.|..+..+|.+.... .......|.+-..--
T Consensus 376 ~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~ 455 (746)
T KOG0354|consen 376 FTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQS 455 (746)
T ss_pred HHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccc
Confidence 00111111222223344569999999999999999999863211 000000011111112
Q ss_pred CCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCC
Q 012322 255 GSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR 334 (466)
Q Consensus 255 ~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR 334 (466)
.+|++.++.++++.|++|.++|||||+++|.|+||+.++.||-||... +....+||+|| ||
T Consensus 456 ~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~s------------------npIrmIQrrGR-gR 516 (746)
T KOG0354|consen 456 TGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSS------------------NPIRMVQRRGR-GR 516 (746)
T ss_pred cccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCc------------------cHHHHHHHhcc-cc
Confidence 589999999999999999999999999999999999999999866533 45588899999 99
Q ss_pred CCCCeEEEecCcc
Q 012322 335 TRPGKCYRLYPST 347 (466)
Q Consensus 335 ~~~G~~~~l~~~~ 347 (466)
.+.|+|+.|++..
T Consensus 517 a~ns~~vll~t~~ 529 (746)
T KOG0354|consen 517 ARNSKCVLLTTGS 529 (746)
T ss_pred ccCCeEEEEEcch
Confidence 9999999999844
No 68
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-33 Score=292.87 Aligned_cols=306 Identities=20% Similarity=0.188 Sum_probs=219.4
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeee
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~ 84 (466)
...|.+++..+..|+++.|..|||+||| +++|+++. ++..+++.|...|+.++...+ ...++......+..
T Consensus 266 R~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L-~~~~I~a~~L~s~q 338 (941)
T KOG0351|consen 266 RPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHL-SKKGIPACFLSSIQ 338 (941)
T ss_pred ChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhh-hhcCcceeeccccc
Confidence 3568888899999999999999999999 88888876 448889999999999998887 33333322222211
Q ss_pred Ee------eccccC--ccceEEEcCHHHHHHHH---hhCCCCCC---CcEEEecCCCccc-cCHHHHHHH--HHHHHHhh
Q 012322 85 IR------FEDRTS--ERTLIKYLTDGVLLREI---LSNPDLSP---YSVIILDEAHERS-LNTDILLGL--VKRLVNLR 147 (466)
Q Consensus 85 ~~------~~~~~~--~~~~i~~~T~g~l~~~~---~~~~~l~~---~~~iIiDEah~~~-~~~~~~~~~--l~~i~~~~ 147 (466)
.. ++.... ...+|+|.||+.+.... .....+.. +.++|||||||.+ |..+|...+ +..+....
T Consensus 339 ~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~ 418 (941)
T KOG0351|consen 339 TAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRF 418 (941)
T ss_pred cHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhC
Confidence 11 111112 36889999999875432 11113333 8899999999933 333333221 22333333
Q ss_pred hcCceEEEEecccChhHHHhh---cC--CCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCC
Q 012322 148 ASKLKILITSATLDGEKVSKF---FS--NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTG 222 (466)
Q Consensus 148 ~~~~~ii~~SAT~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t 222 (466)
+ ...+|++|||.+...-.+. ++ ++.++........ ..|....... .+.............+.+.+||||.+
T Consensus 419 ~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~N--L~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~s 494 (941)
T KOG0351|consen 419 P-GVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPN--LKYEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLS 494 (941)
T ss_pred C-CCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCC--ceEEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCC
Confidence 3 6899999999977543333 32 3443333222222 2221111110 12222233333445667899999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCccc
Q 012322 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (466)
Q Consensus 223 ~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~ 302 (466)
+.+|+.++..|++. ++...+||+||++.+|..|.+.|..++++|||||=+++||||.|||+.|||+++||
T Consensus 495 r~~ce~vs~~L~~~----------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPk 564 (941)
T KOG0351|consen 495 RKECEQVSAVLRSL----------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPK 564 (941)
T ss_pred cchHHHHHHHHHHh----------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCch
Confidence 99999999999987 78889999999999999999999999999999999999999999999999999998
Q ss_pred ceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
|.+.|.|.+|||||+ .+..|..+|...++..
T Consensus 565 ------------------s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 565 ------------------SFEGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred ------------------hHHHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 788999999999999 7899999998887755
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.6e-31 Score=257.11 Aligned_cols=285 Identities=16% Similarity=0.188 Sum_probs=179.3
Q ss_pred hHHHHHHHHhcCC--EEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhC-------CccCC
Q 012322 9 YEETIVETVEQNP--VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-------VRLGE 79 (466)
Q Consensus 9 ~q~~i~~~i~~~~--~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~-------~~~~~ 79 (466)
+|.+.++++.+++ +++++||||||||......+.. .+.+.+++.|+++++.++++++.+.+. ..+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~----~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH----GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLH 76 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH----cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 5888999998887 4788999999999433222222 234578899999999999998876652 11111
Q ss_pred eeeeeEe----ec------------------cccCccceEEEcCHHHHHHHHhh---CC------CCCCCcEEEecCCCc
Q 012322 80 EVGYAIR----FE------------------DRTSERTLIKYLTDGVLLREILS---NP------DLSPYSVIILDEAHE 128 (466)
Q Consensus 80 ~~g~~~~----~~------------------~~~~~~~~i~~~T~g~l~~~~~~---~~------~l~~~~~iIiDEah~ 128 (466)
..|.... .. ......+.|++++|+.+...+.. .. ++.++++||+||+|+
T Consensus 77 ~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~ 156 (357)
T TIGR03158 77 VSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHL 156 (357)
T ss_pred ecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccc
Confidence 1121000 00 00012467788888887654432 11 357899999999997
Q ss_pred cccCHH-HH---HHHHHHHHHhhhcCceEEEEecccChhH---HHhh-cCCCCeEeeCCCcC------------------
Q 012322 129 RSLNTD-IL---LGLVKRLVNLRASKLKILITSATLDGEK---VSKF-FSNCPTLNVPGKLY------------------ 182 (466)
Q Consensus 129 ~~~~~~-~~---~~~l~~i~~~~~~~~~ii~~SAT~~~~~---~~~~-~~~~~~~~~~~~~~------------------ 182 (466)
...+.. .+ ...+. +......+.++++||||+++.. +.+. +.+.+...+.++.+
T Consensus 157 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T TIGR03158 157 YDAKQLVGMLFLLAYMQ-LIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFR 235 (357)
T ss_pred cCcccchhhhhhhHHHH-HHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccc
Confidence 443222 11 12222 2222223579999999998653 2232 01234444444410
Q ss_pred ----ceeeeecCCC--CCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCC
Q 012322 183 ----PVEILHSKER--PTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS 256 (466)
Q Consensus 183 ----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~ 256 (466)
+++..+.... ....+....+.+........++++||||||+++++.+++.|++.. .+..+..+||.
T Consensus 236 ~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~--------~~~~~~~l~g~ 307 (357)
T TIGR03158 236 PVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG--------LGDDIGRITGF 307 (357)
T ss_pred eeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC--------CCceEEeeecC
Confidence 2332222211 111222223333333333456799999999999999999998751 24578889999
Q ss_pred CCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccC
Q 012322 257 LPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (466)
Q Consensus 257 l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaG 333 (466)
+++++|.++. +.+|+|||+++++|||+|++ +||. . |.+..+|+||+||+|
T Consensus 308 ~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi~-~-------------------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLIF-S-------------------ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEEE-C-------------------CCCHHHHhhhcccCC
Confidence 9999997653 67899999999999999987 4442 1 236779999999998
No 70
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.5e-32 Score=263.89 Aligned_cols=313 Identities=17% Similarity=0.213 Sum_probs=245.0
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHH-HH-hcCcCCCcEEEEeCchhHHHHHHHHHHHHH----hCCccCCee
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQI-LH-RHGYTKSGIIGVTQPRRVAAVSVARRVAQE----LGVRLGEEV 81 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~-~~-~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~----~~~~~~~~~ 81 (466)
..|...+..+..+-++||++.+|+|||.....+ +. ..........+++.|+|+++.|+...+.+. .|..+...+
T Consensus 50 kiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfI 129 (980)
T KOG4284|consen 50 KIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFI 129 (980)
T ss_pred chhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEe
Confidence 457778888899999999999999999322222 22 222234557889999999999998877543 345555556
Q ss_pred eeeE-eeccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecc
Q 012322 82 GYAI-RFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (466)
Q Consensus 82 g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (466)
|... ..+......++|++.|||++..+...+. ..+.++++|+|||+ ..++++.+..-+..++...|...|++++|||
T Consensus 130 GGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~a~SAT 208 (980)
T KOG4284|consen 130 GGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVAAFSAT 208 (980)
T ss_pred cCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheeeEEecc
Confidence 5432 2233334679999999999998886555 78999999999999 6788888888899999999989999999999
Q ss_pred cChh---HHHhhcCCCCeEeeCCCc---CceeeeecCCCC----CchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHH
Q 012322 160 LDGE---KVSKFFSNCPTLNVPGKL---YPVEILHSKERP----TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (466)
Q Consensus 160 ~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l 229 (466)
-|.. .+.+|+.++..+..+.+. +.++.++...+. .+....++..+-++...-+-.+.||||+....|+.+
T Consensus 209 Yp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~ 288 (980)
T KOG4284|consen 209 YPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPI 288 (980)
T ss_pred CchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHH
Confidence 9763 488999888888776543 233333332222 223444555566666666777999999999999999
Q ss_pred HHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCC
Q 012322 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (466)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~ 309 (466)
+.+|... |+.+.++.|.|++.+|..+++.++.-..+|||+||..++|||-|+++.|||.+-|
T Consensus 289 a~~L~ss----------G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p-------- 350 (980)
T KOG4284|consen 289 ATHLKSS----------GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAP-------- 350 (980)
T ss_pred HHHhhcc----------CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCC--------
Confidence 9999876 8999999999999999999999999999999999999999999999999996643
Q ss_pred CCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 310 ~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
.+-.+|.||+|||||. ..|.++.+...+..
T Consensus 351 ----------~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 351 ----------ADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred ----------cchHHHHHHhhhcccccccceeEEEeccchh
Confidence 3666899999999999 67999988765544
No 71
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=261.82 Aligned_cols=307 Identities=17% Similarity=0.190 Sum_probs=218.9
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCc-----CCCcEEEEeCchhHHHHHHHHHHHHHh--CCccCCe
Q 012322 10 EETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY-----TKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGEE 80 (466)
Q Consensus 10 q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~-----~~~~~i~~~~p~~~l~~~~~~~~~~~~--~~~~~~~ 80 (466)
|...+..+.++++++.+|||||||| +.+|.+...... ..|-+.+++.|+++++.|.+..+.+.. .......
T Consensus 163 q~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a 242 (593)
T KOG0344|consen 163 QKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRA 242 (593)
T ss_pred cchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhh
Confidence 4467888999999999999999999 455544443322 234589999999999999999876544 1111111
Q ss_pred eeeeEe------eccccCccceEEEcCHHHHHHHHhhCC---CCCCCcEEEecCCCccccCH-HHHHHHHHHHHHh-hhc
Q 012322 81 VGYAIR------FEDRTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNT-DILLGLVKRLVNL-RAS 149 (466)
Q Consensus 81 ~g~~~~------~~~~~~~~~~i~~~T~g~l~~~~~~~~---~l~~~~~iIiDEah~~~~~~-~~~~~~l~~i~~~-~~~ 149 (466)
.+.... .........++++.||-.+...+...+ .+..+.++|+||++ +.+.. .|... +..+... ..+
T Consensus 243 ~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Q-la~I~sac~s~ 320 (593)
T KOG0344|consen 243 AQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQ-LADIYSACQSP 320 (593)
T ss_pred hhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHH-HHHHHHHhcCc
Confidence 111000 001112457899999999888886654 78899999999999 67777 44444 4444443 335
Q ss_pred CceEEEEecccChhHHHhhc----CCCCeEeeCCCcCce-----eeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEec
Q 012322 150 KLKILITSATLDGEKVSKFF----SNCPTLNVPGKLYPV-----EILHSKERPTSYLESALKTAIDIHVREPEGDVLIFM 220 (466)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~ 220 (466)
+.++=++|||.+.. +++|. .+...+.+..+.... +..|-... ...+-.+.+.....-+.++|||+
T Consensus 321 ~i~~a~FSat~~~~-VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse-----~~K~lA~rq~v~~g~~PP~lIfV 394 (593)
T KOG0344|consen 321 DIRVALFSATISVY-VEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSE-----KGKLLALRQLVASGFKPPVLIFV 394 (593)
T ss_pred chhhhhhhccccHH-HHHHHHHhhccceeEEEecchhHhhhhhhhheeeecc-----hhHHHHHHHHHhccCCCCeEEEE
Confidence 78888999999753 33443 233333333221111 11111111 11222333333344567999999
Q ss_pred CCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCc
Q 012322 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (466)
Q Consensus 221 ~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~ 300 (466)
.+.+.|..+...|... .++++...||..++.+|.+.+++|+.|+++|++||+++++|+|+-+++.||++|+
T Consensus 395 Qs~eRak~L~~~L~~~---------~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 395 QSKERAKQLFEELEIY---------DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDF 465 (593)
T ss_pred ecHHHHHHHHHHhhhc---------cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCC
Confidence 9999999999999632 4888999999999999999999999999999999999999999999999999988
Q ss_pred ccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
|. |..+|+||+||+||. +.|.+|.+|++++...
T Consensus 466 p~------------------s~~syihrIGRtgRag~~g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 466 PQ------------------SDLSYIHRIGRTGRAGRSGKAITFYTDQDMPR 499 (593)
T ss_pred Cc------------------hhHHHHHHhhccCCCCCCcceEEEeccccchh
Confidence 76 666999999999999 7899999999987654
No 72
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.98 E-value=4.6e-31 Score=266.83 Aligned_cols=296 Identities=13% Similarity=0.059 Sum_probs=197.3
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
...+++|.+.+..+..++..++++|||+|||.++..+..........++++++|+++++.|+.+++.+..........+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 56778999988888888888999999999996554443322222334899999999999999999876553322111111
Q ss_pred eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChh
Q 012322 84 AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (466)
Q Consensus 84 ~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~ 163 (466)
..........+|+++|++.+.+.. ..++.++++||+|||| +..... +..++...++..+++++|||+...
T Consensus 193 --~~g~~~~~~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH-~~~~~~-----~~~il~~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 193 --YSGTAKDTDAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECH-LFTGKS-----LTSIITKLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred --ecCcccCCCCCEEEeeHHHHhhch--hhhccccCEEEEEchh-cccchh-----HHHHHHhhhccceEEEEeccCCCc
Confidence 111112245789999999887543 2257899999999999 444332 234444443356799999999542
Q ss_pred H-----HHhhcCCCCeEeeC-------CCcCceeee--ecCCC--------CCchH------------HHHHHHHHHHhh
Q 012322 164 K-----VSKFFSNCPTLNVP-------GKLYPVEIL--HSKER--------PTSYL------------ESALKTAIDIHV 209 (466)
Q Consensus 164 ~-----~~~~~~~~~~~~~~-------~~~~~~~~~--~~~~~--------~~~~~------------~~~~~~~~~~~~ 209 (466)
. +..+|+.. ...+. +...+..+. ..... ..+|. ...+......+.
T Consensus 263 ~~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~ 341 (501)
T PHA02558 263 KANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA 341 (501)
T ss_pred cccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1 22344321 11110 111111110 00000 00110 011111111111
Q ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEe-cccccccc
Q 012322 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST-NIAETSLT 288 (466)
Q Consensus 210 ~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT-~~~~~Gid 288 (466)
..+++++||+++.++++.+++.|.+. +..+..+||+++.++|.++++.|++|+..||||| +++++|+|
T Consensus 342 -~~~~~~lV~~~~~~h~~~L~~~L~~~----------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 342 -KKGENTFVMFKYVEHGKPLYEMLKKV----------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred -hcCCCEEEEEEEHHHHHHHHHHHHHc----------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 34568999999999999999999886 6789999999999999999999999999999999 89999999
Q ss_pred cCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCe
Q 012322 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGK 339 (466)
Q Consensus 289 ip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~ 339 (466)
+|++++||...-++ |...|+||+||++|..+|+
T Consensus 411 ip~ld~vIl~~p~~------------------s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 411 IKNLHHVIFAHPSK------------------SKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccEEEEecCCc------------------chhhhhhhhhccccCCCCC
Confidence 99999999744322 6778999999999996654
No 73
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=4.5e-31 Score=277.06 Aligned_cols=327 Identities=22% Similarity=0.213 Sum_probs=227.6
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCcc-----C
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRL-----G 78 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~-----~ 78 (466)
.+|+||.+.++.+.+|++++|+.||||||| +++.+++......+..+.+++.|+++|+++|.+++.+...... +
T Consensus 70 ~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~ 149 (851)
T COG1205 70 RLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFG 149 (851)
T ss_pred cccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceee
Confidence 479999999999999999999999999999 6666677666666666899999999999999999876654322 1
Q ss_pred CeeeeeEeecc--ccCccceEEEcCHHHHHHHHhhCC-----CCCCCcEEEecCCCc-cccCHHHHHHHHHHHHHhh---
Q 012322 79 EEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP-----DLSPYSVIILDEAHE-RSLNTDILLGLVKRLVNLR--- 147 (466)
Q Consensus 79 ~~~g~~~~~~~--~~~~~~~i~~~T~g~l~~~~~~~~-----~l~~~~~iIiDEah~-~~~~~~~~~~~l~~i~~~~--- 147 (466)
...|.....+. .....++|++++|.++...++... .+.++++||+||+|- ++.-..-+..+++++....
T Consensus 150 ~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~ 229 (851)
T COG1205 150 RYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRY 229 (851)
T ss_pred eecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhcc
Confidence 11121111111 124678999999999987554332 578899999999996 3333333444455555444
Q ss_pred hcCceEEEEeccc-Chh-HHHhhcCCCCeEeeCCCcCc--eeeeecCCCCCc--------hHHHHHHHHHHHhhcCCCCC
Q 012322 148 ASKLKILITSATL-DGE-KVSKFFSNCPTLNVPGKLYP--VEILHSKERPTS--------YLESALKTAIDIHVREPEGD 215 (466)
Q Consensus 148 ~~~~~ii~~SAT~-~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 215 (466)
+.+.++|++|||+ ++. ...++++..-...+.+...+ ........+..- -.......+..... ..+-+
T Consensus 230 ~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~-~~~~~ 308 (851)
T COG1205 230 GSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLV-RNGIQ 308 (851)
T ss_pred CCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHH-HcCce
Confidence 3478999999999 443 45566654322223332222 222222222100 11111122222111 23458
Q ss_pred EEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEE
Q 012322 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (466)
Q Consensus 216 ~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~V 295 (466)
+|+|+.+++.++.++...++.....+ . .....+..|+|++.+++|.+++..|+.|+..++++|++++.|||+.+++.|
T Consensus 309 tL~F~~sr~~~e~~~~~~~~~~~~~~-~-~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldav 386 (851)
T COG1205 309 TLVFFRSRKQVELLYLSPRRRLVREG-G-KLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAV 386 (851)
T ss_pred EEEEEehhhhhhhhhhchhHHHhhcc-h-hhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhH
Confidence 99999999999999866665544332 1 124568899999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC-CCeEEEecCccchhh
Q 012322 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-PGKCYRLYPSTVYHD 351 (466)
Q Consensus 296 I~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~~ 351 (466)
|.+|+|. .|..+++||+|||||.. .+..+..+..+..+.
T Consensus 387 i~~g~P~-----------------~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~ 426 (851)
T COG1205 387 IAYGYPG-----------------VSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDS 426 (851)
T ss_pred hhcCCCC-----------------chHHHHHHhhhhccCCCCCceEEEEeCCCccch
Confidence 9999864 16679999999999994 666666666665554
No 74
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7.7e-31 Score=239.43 Aligned_cols=308 Identities=19% Similarity=0.259 Sum_probs=229.8
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcCcC-CCcEEEEeCchhHHHHHHHHHHH---HHhCCccCCeee
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVG 82 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~---~~~~~~~~~~~g 82 (466)
+.|+..+..+-+|.++.+.+++|+||| ++...++...... ....++++.|+++++.|..+... ...+..+...+|
T Consensus 51 aIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~ig 130 (397)
T KOG0327|consen 51 AIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIG 130 (397)
T ss_pred HHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecC
Confidence 455555566677899999999999999 6666666554332 34478899999999999885442 223334444444
Q ss_pred eeEee-cc--ccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEec
Q 012322 83 YAIRF-ED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (466)
Q Consensus 83 ~~~~~-~~--~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (466)
..... +. ......+|++.|||.....+.... ....+.++++|||++ ++..++... +..+.+..+.+.|++++||
T Consensus 131 g~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE-mLs~gfkdq-I~~if~~lp~~vQv~l~SA 208 (397)
T KOG0327|consen 131 GTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE-MLSRGFKDQ-IYDIFQELPSDVQVVLLSA 208 (397)
T ss_pred cccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh-hhccchHHH-HHHHHHHcCcchhheeecc
Confidence 32222 22 223457999999999988875444 455699999999995 555555554 7888888888999999999
Q ss_pred ccChhHH---HhhcCCCCeEeeCCCcCc---eeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHH
Q 012322 159 TLDGEKV---SKFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (466)
Q Consensus 159 T~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~ 232 (466)
|++.+.+ .+|..++..+.+...... ...+|....+.+ ++..+.+++. .-.+.+|||||++.+..+...
T Consensus 209 T~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~ 282 (397)
T KOG0327|consen 209 TMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDK 282 (397)
T ss_pred cCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHHH
Confidence 9988653 356655555554433222 222333222222 4445555554 456899999999999999999
Q ss_pred HHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCc
Q 012322 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (466)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~ 312 (466)
|... +..+...|+.|.+.+|..++++|+.|..+||+.|+.+++|+|+-++..||++++|.
T Consensus 283 L~~~----------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~---------- 342 (397)
T KOG0327|consen 283 LRAH----------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPA---------- 342 (397)
T ss_pred HhhC----------CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecccc----------
Confidence 9665 88999999999999999999999999999999999999999999999999988765
Q ss_pred cccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 313 ~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
.+.+|.||+||+||. .+|.++.++++++...
T Consensus 343 --------~~~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 343 --------RKENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred --------chhhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 556999999999999 8999999998877654
No 75
>PRK09401 reverse gyrase; Reviewed
Probab=99.97 E-value=2.7e-30 Score=279.16 Aligned_cols=292 Identities=14% Similarity=0.072 Sum_probs=190.5
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCC---ccCCee
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGEEV 81 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~---~~~~~~ 81 (466)
..+++|...+..+..|++++++||||||||+++..++.... .++.+++++.|+++++.|+++++.+.... .+....
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~-~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~ 158 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLA-KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILY 158 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEE
Confidence 45789999999999999999999999999965443333222 24678999999999999999988655432 211112
Q ss_pred eeeEe-e-cc------ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccC-----------HHHHHHHHHH
Q 012322 82 GYAIR-F-ED------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLN-----------TDILLGLVKR 142 (466)
Q Consensus 82 g~~~~-~-~~------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~-----------~~~~~~~l~~ 142 (466)
|.... . +. ......+|+++|||.+.+.+. .....+++++|+|||| +.++ .+|....++.
T Consensus 159 g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD-~~L~~~k~id~~l~~lGF~~~~i~~ 236 (1176)
T PRK09401 159 YHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVD-AVLKSSKNIDKLLYLLGFSEEDIEK 236 (1176)
T ss_pred ccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChH-HhhhcccchhhHHHhCCCCHHHHHH
Confidence 21100 0 00 012458999999999988765 2234569999999999 4443 1221112222
Q ss_pred HHHhhh------------------------cCceEEEEecccChhHHH-hhcCCCCeEeeCCCcC---ceeeeecCCCCC
Q 012322 143 LVNLRA------------------------SKLKILITSATLDGEKVS-KFFSNCPTLNVPGKLY---PVEILHSKERPT 194 (466)
Q Consensus 143 i~~~~~------------------------~~~~ii~~SAT~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 194 (466)
+....+ .+.+++++|||++++.+. .++.+...+.+..... .+...|....
T Consensus 237 i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~-- 314 (1176)
T PRK09401 237 AMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE-- 314 (1176)
T ss_pred HHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc--
Confidence 222211 157899999999865332 2333333333332211 1222222111
Q ss_pred chHHHHHHHHHHHhhcCCCCCEEEecCCHHH---HHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCC
Q 012322 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDD---IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP 271 (466)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~---~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~ 271 (466)
+ ....+..+... .+.++||||+++.. ++.+++.|... ++.+..+||+| + . .++.|++
T Consensus 315 ~----k~~~L~~ll~~-l~~~~LIFv~t~~~~~~ae~l~~~L~~~----------gi~v~~~hg~l---~-~-~l~~F~~ 374 (1176)
T PRK09401 315 D----SVEKLVELVKR-LGDGGLIFVPSDKGKEYAEELAEYLEDL----------GINAELAISGF---E-R-KFEKFEE 374 (1176)
T ss_pred c----HHHHHHHHHHh-cCCCEEEEEecccChHHHHHHHHHHHHC----------CCcEEEEeCcH---H-H-HHHHHHC
Confidence 1 11222222222 23579999999777 99999999886 88999999999 2 2 3499999
Q ss_pred CcceEEEE----ecccccccccCC-eEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccC
Q 012322 272 NCRRFIVS----TNIAETSLTVDG-VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (466)
Q Consensus 272 g~~~ilva----T~~~~~Gidip~-v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaG 333 (466)
|+.+|||| ||+++||||+|+ |++||++|.|+... ..-....+.+|.||+-
T Consensus 375 G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~------------~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 375 GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF------------SLEEELAPPFLLLRLL 429 (1176)
T ss_pred CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE------------eccccccCHHHHHHHH
Confidence 99999999 699999999999 89999999998443 0111234557888774
No 76
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1e-29 Score=259.69 Aligned_cols=427 Identities=17% Similarity=0.167 Sum_probs=260.5
Q ss_pred hHHHHHHH-HhcCCEEEEEcCCCCcHH-HHHHHHHHhcCc----C-----CCcEEEEeCchhHHHHHHHHHHHHHh---C
Q 012322 9 YEETIVET-VEQNPVVVVIGETGSGKS-TQLSQILHRHGY----T-----KSGIIGVTQPRRVAAVSVARRVAQEL---G 74 (466)
Q Consensus 9 ~q~~i~~~-i~~~~~~ii~apTGsGKT-t~~~~~~~~~~~----~-----~~~~i~~~~p~~~l~~~~~~~~~~~~---~ 74 (466)
.|..+..+ +...+++++|||||+||| .-+..++..... . ...+++++.|.+++++++...+++.+ |
T Consensus 313 IQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~G 392 (1674)
T KOG0951|consen 313 IQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLG 392 (1674)
T ss_pred HHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccC
Confidence 34455544 445678999999999999 333333333221 1 12378999999999999998887654 4
Q ss_pred CccCCeeeeeEeeccccCccceEEEcCHHHHHHHHhhC---CCCCCCcEEEecCCCccccCHHHHH-HHHHHHHH---hh
Q 012322 75 VRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSN---PDLSPYSVIILDEAHERSLNTDILL-GLVKRLVN---LR 147 (466)
Q Consensus 75 ~~~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~---~~l~~~~~iIiDEah~~~~~~~~~~-~~l~~i~~---~~ 147 (466)
+.++...|... ........++++++||+...-.-..+ ...+-++++||||.|...-+.+..+ ....+... ..
T Consensus 393 I~V~ElTgD~~-l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~ 471 (1674)
T KOG0951|consen 393 ITVLELTGDSQ-LGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSEST 471 (1674)
T ss_pred cEEEEeccccc-chhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhc
Confidence 55555554221 12233467999999999764333332 2455688999999996433444333 22222222 22
Q ss_pred hcCceEEEEecccCh-hHHHhhcCCCC--eEee--CCCcCceeeeecCCCCCchH---HHHHHHHHH-HhhcCCCCCEEE
Q 012322 148 ASKLKILITSATLDG-EKVSKFFSNCP--TLNV--PGKLYPVEILHSKERPTSYL---ESALKTAID-IHVREPEGDVLI 218 (466)
Q Consensus 148 ~~~~~ii~~SAT~~~-~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~lV 218 (466)
..+.+++++|||+|+ ++++.|+...+ .+.. .-|+.|++..|-.....+.. ..+-+..++ +.....++++||
T Consensus 472 ~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLV 551 (1674)
T KOG0951|consen 472 EEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLV 551 (1674)
T ss_pred ccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence 358899999999965 67888775433 2223 34566666665543333222 222222222 122334589999
Q ss_pred ecCCHHHHHHHHHHHHHhhhh----------ccC-----------------CCCCCeEEEeecCCCCHHHHhcccCCCCC
Q 012322 219 FMTGQDDIEKLVSKLEDKIRS----------LDE-----------------GSCMDAVILPLHGSLPPEMQVRVFSPPPP 271 (466)
Q Consensus 219 F~~t~~~~~~l~~~L~~~~~~----------~~~-----------------~~~~~~~v~~~h~~l~~~~r~~~~~~f~~ 271 (466)
|+.+|+++-+.|..+++.+-+ -+. .....++++.||+||+..+|..+++.|.+
T Consensus 552 FVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~ 631 (1674)
T KOG0951|consen 552 FVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFAD 631 (1674)
T ss_pred EEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhc
Confidence 999999999999999853321 110 02246789999999999999999999999
Q ss_pred CcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC-----CCeEEEecCc
Q 012322 272 NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-----PGKCYRLYPS 346 (466)
Q Consensus 272 g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-----~G~~~~l~~~ 346 (466)
|.++|+|+|.++++|+|+|+-+++|- ...+|||..|... ..|..+.+||.|||||.+ .|..+.=+++
T Consensus 632 g~iqvlvstatlawgvnlpahtViik----gtqvy~pekg~w~----elsp~dv~qmlgragrp~~D~~gegiiit~~se 703 (1674)
T KOG0951|consen 632 GHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPEKGRWT----ELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSE 703 (1674)
T ss_pred CceeEEEeehhhhhhcCCCcceEEec----CccccCcccCccc----cCCHHHHHHHHhhcCCCccCcCCceeeccCchH
Confidence 99999999999999999998888884 5678999987542 457888899999999982 3333333333
Q ss_pred cchhhhCCCCC--CCccccCCchHHHHHHHhCCCCCC----ccc----------cc--------cCCCCCC----HHHHH
Q 012322 347 TVYHDEFLDVT--VPEIQRSSLAGSVLYLKSLDLSDI----NVL----------KF--------DFLDPPS----SESLE 398 (466)
Q Consensus 347 ~~~~~~~~~~~--~p~i~~~~l~~~~l~l~~~~~~~~----~~~----------~~--------~~~~~p~----~~~~~ 398 (466)
-.|...+...+ .++-.-..+..-+-.-+.+|+.+. +.. .. +..|++. .+-+.
T Consensus 704 ~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvh 783 (1674)
T KOG0951|consen 704 LQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVH 783 (1674)
T ss_pred hhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHH
Confidence 33222111111 111111111111111111221110 000 00 0012221 13456
Q ss_pred HHHHHHHHcccccCC---C--CCCHHHHHHccCCCCHHHHHHHHHhhhhCC
Q 012322 399 DALKQLYLIDAIDEN---G--SITSIGRTMAELPLEPSLSRMLMEANEFGC 444 (466)
Q Consensus 399 ~~l~~L~~~~~l~~~---~--~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~ 444 (466)
.|.-.|.+.|.|--+ | +.|.+|++.+.+++.-..+...-......|
T Consensus 784 sa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~ 834 (1674)
T KOG0951|consen 784 SAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETM 834 (1674)
T ss_pred HHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhh
Confidence 777788888888433 3 689999999999987766655544444333
No 77
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=1.5e-29 Score=270.67 Aligned_cols=316 Identities=22% Similarity=0.272 Sum_probs=207.0
Q ss_pred CCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeee
Q 012322 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (466)
Q Consensus 3 ~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g 82 (466)
.+..+.||.++.....++ ++++++|||+|||.++..++.......+.+++++.|++.++.|+.+.+.+.++........
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 91 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVV 91 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEE
Confidence 467789999999988877 7899999999999544333332223346789999999999999999888777653111111
Q ss_pred eeE--eeccc--cCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 83 YAI--RFEDR--TSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 83 ~~~--~~~~~--~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
+.. ....+ .....+|+++||+.+...+.... .+.++++||+|||| +.........+++...... ....++++|
T Consensus 92 ~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~-~~~~il~lT 169 (773)
T PRK13766 92 FTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDA-KNPLVLGLT 169 (773)
T ss_pred EeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcC-CCCEEEEEE
Confidence 111 11110 11357899999999887775544 67889999999999 4443322223333333333 367799999
Q ss_pred cccCh--hHHHhhcCCC--CeEeeCCCcC--------ceeeee--------------------------------c--CC
Q 012322 158 ATLDG--EKVSKFFSNC--PTLNVPGKLY--------PVEILH--------------------------------S--KE 191 (466)
Q Consensus 158 AT~~~--~~~~~~~~~~--~~~~~~~~~~--------~~~~~~--------------------------------~--~~ 191 (466)
||+.. +.+...+.+. ..+.+..+.. +.++.+ . ..
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 99832 2222222110 0000000000 000000 0 00
Q ss_pred ----------------------CCCc------------------------------hHH---------------------
Q 012322 192 ----------------------RPTS------------------------------YLE--------------------- 198 (466)
Q Consensus 192 ----------------------~~~~------------------------------~~~--------------------- 198 (466)
.... |+.
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 0000 000
Q ss_pred -----------------HHHHHHHHHh----hcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCC-
Q 012322 199 -----------------SALKTAIDIH----VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS- 256 (466)
Q Consensus 199 -----------------~~~~~~~~~~----~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~- 256 (466)
.+...+..+. ...+++++||||++++.++.+++.|... ++.+..+||.
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~----------~~~~~~~~g~~ 399 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE----------GIKAVRFVGQA 399 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC----------CCceEEEEccc
Confidence 0000111111 1245679999999999999999999654 5566667765
Q ss_pred -------CCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhc
Q 012322 257 -------LPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRV 329 (466)
Q Consensus 257 -------l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~ 329 (466)
|++.+|.++++.|++|..+|+|||+++++|+|+|++++||+++.+. +...|+||+
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~------------------s~~r~iQR~ 461 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVP------------------SEIRSIQRK 461 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCC------------------CHHHHHHHh
Confidence 9999999999999999999999999999999999999999966433 666899999
Q ss_pred cccCCCCCCeEEEecCccch
Q 012322 330 GRAGRTRPGKCYRLYPSTVY 349 (466)
Q Consensus 330 GRaGR~~~G~~~~l~~~~~~ 349 (466)
||+||.++|.+|.|+.+...
T Consensus 462 GR~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 462 GRTGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred cccCcCCCCEEEEEEeCCCh
Confidence 99999999999999976543
No 78
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.1e-30 Score=265.57 Aligned_cols=312 Identities=19% Similarity=0.245 Sum_probs=224.9
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCc-----CCCcEEEEeCchhHHHHHHHHHHHHH---hC
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY-----TKSGIIGVTQPRRVAAVSVARRVAQE---LG 74 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~-----~~~~~i~~~~p~~~l~~~~~~~~~~~---~~ 74 (466)
+..+.|...+.+|.+|+++|.+|.|||||| +++|.+...... ..|...+++.|++.++.|+.+.+.+. .+
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ 466 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG 466 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC
Confidence 345678889999999999999999999999 446665333221 23668899999999999998876543 44
Q ss_pred CccCCeeeeeEeecc--ccCccceEEEcCHHHHHHHHhhCC----CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 75 VRLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 75 ~~~~~~~g~~~~~~~--~~~~~~~i~~~T~g~l~~~~~~~~----~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
..+....|.....+. .....+.|++||||.....+.... .+.++.++|+|||+ +.++..|...... +++..+
T Consensus 467 ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD-rmfdmgfePq~~~-Ii~nlr 544 (997)
T KOG0334|consen 467 IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD-RMFDMGFEPQITR-ILQNLR 544 (997)
T ss_pred ceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhh-hhheeccCcccch-HHhhcc
Confidence 444434442221111 112458999999999888874433 45566699999999 8888888666555 444445
Q ss_pred cCceEEEEecccChh--HHH-hhcCCCCeEeeCCCcC---ceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCC
Q 012322 149 SKLKILITSATLDGE--KVS-KFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTG 222 (466)
Q Consensus 149 ~~~~ii~~SAT~~~~--~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t 222 (466)
++.|.+++|||.+.. .++ ..+..+..+.+.++.. .+...+......+.....+..++.. ....+++||||..
T Consensus 545 pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e--~~e~~~tiiFv~~ 622 (997)
T KOG0334|consen 545 PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGE--RYEDGKTIIFVDK 622 (997)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHH--HhhcCCEEEEEcC
Confidence 599999999999864 233 3333222233443321 1111221112111111122222222 2347899999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCccc
Q 012322 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (466)
Q Consensus 223 ~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~ 302 (466)
.+.|..+.+.|.+. ++.+..+||+.++.+|..+++.|++|..++++||+++++|+|++++..||+|++|+
T Consensus 623 qe~~d~l~~~L~~a----------g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pn 692 (997)
T KOG0334|consen 623 QEKADALLRDLQKA----------GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPN 692 (997)
T ss_pred chHHHHHHHHHHhc----------CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccch
Confidence 99999999999865 88888899999999999999999999999999999999999999999999998877
Q ss_pred ceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
-++.|+||.||+||. +.|.||.+.++++
T Consensus 693 ------------------h~edyvhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 693 ------------------HYEDYVHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred ------------------hHHHHHHHhcccccCCccceeEEEeChHH
Confidence 455799999999999 7899999998844
No 79
>PRK14701 reverse gyrase; Provisional
Probab=99.96 E-value=2.5e-29 Score=277.13 Aligned_cols=312 Identities=13% Similarity=0.099 Sum_probs=198.5
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCc-cCCeeee
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEEVGY 83 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~-~~~~~g~ 83 (466)
..++.|.+++..+.+|++++++||||||||++...+..... ..+.+++++.|+++++.|+.+.+....... .+..+..
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~ 157 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVY 157 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEE
Confidence 45789999999999999999999999999964322222221 245689999999999999999886543211 1111111
Q ss_pred ---eEeecc-------ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccC-----------HHHHHHHHHH
Q 012322 84 ---AIRFED-------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLN-----------TDILLGLVKR 142 (466)
Q Consensus 84 ---~~~~~~-------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~-----------~~~~~~~l~~ 142 (466)
...... ....+.+|+++|||.+.+.+.... ..+++++||||||+ .+. .+|..++...
T Consensus 158 ~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~-ml~~~knid~~L~llGF~~e~~~~ 235 (1638)
T PRK14701 158 YHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDA-FLKASKNIDRSLQLLGFYEEIIEK 235 (1638)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECcee-ccccccccchhhhcCCChHHHHHH
Confidence 111111 112357999999998877654322 26799999999995 332 2333332221
Q ss_pred ---HH----------------------HhhhcCce-EEEEecccChh-HHHhhcCCCCeEeeCCCcCc---eeeeecCCC
Q 012322 143 ---LV----------------------NLRASKLK-ILITSATLDGE-KVSKFFSNCPTLNVPGKLYP---VEILHSKER 192 (466)
Q Consensus 143 ---i~----------------------~~~~~~~~-ii~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 192 (466)
++ ...+...+ ++++|||+++. ....++.+...+.+...... +...|....
T Consensus 236 ~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~ 315 (1638)
T PRK14701 236 AWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNPE 315 (1638)
T ss_pred HHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEECC
Confidence 11 11122334 67799999763 45566655555555443221 222222111
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCEEEecCCHHH---HHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCC
Q 012322 193 PTSYLESALKTAIDIHVREPEGDVLIFMTGQDD---IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP 269 (466)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~---~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f 269 (466)
.+.. ..+..+.... +.++||||+|++. |+.+++.|.+. ++.+..+||+ |..+++.|
T Consensus 316 -~~~k----~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~----------Gi~a~~~h~~-----R~~~l~~F 374 (1638)
T PRK14701 316 -KIIK----EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED----------GFKIELVSAK-----NKKGFDLF 374 (1638)
T ss_pred -HHHH----HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC----------CCeEEEecch-----HHHHHHHH
Confidence 1111 1233332222 4579999999876 48899999876 8999999995 88899999
Q ss_pred CCCcceEEEEe----cccccccccCC-eEEEEeCCccccee----ecCCCCccccceeeecHHHHHHhccccCCC-CCCe
Q 012322 270 PPNCRRFIVST----NIAETSLTVDG-VVYVIDCGYVKQRQ----YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGK 339 (466)
Q Consensus 270 ~~g~~~ilvaT----~~~~~Gidip~-v~~VI~~g~~~~~~----~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~ 339 (466)
++|+.+||||| ++++||||+|+ |+|||++|+|+... |...... +.. .....++.||+||. .++.
T Consensus 375 ~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~~~----~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 375 EEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--ILG----LLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred HcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--hhc----chHHHHHhhhhcccCCcch
Confidence 99999999999 58999999999 99999999999331 1111110 000 12344778999998 5666
Q ss_pred EEEecCc
Q 012322 340 CYRLYPS 346 (466)
Q Consensus 340 ~~~l~~~ 346 (466)
++..+..
T Consensus 449 ~~~~~~~ 455 (1638)
T PRK14701 449 GVLDVFP 455 (1638)
T ss_pred hHHHhHH
Confidence 6544433
No 80
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=4.2e-28 Score=220.21 Aligned_cols=305 Identities=17% Similarity=0.154 Sum_probs=210.5
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeee
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~ 84 (466)
.+.|.+.+++...++..+++.|||.||| +++|+++. .+..+++.|...++.++.-.+. .+|+.........
T Consensus 96 rplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~plislmedqil~lk-qlgi~as~lnans 168 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISLMEDQILQLK-QLGIDASMLNANS 168 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhHHHHHHHHHHHH-HhCcchhhccCcc
Confidence 4567788889999999999999999999 77887765 4578899999999888776653 3444322211111
Q ss_pred Eeec--------cccCccceEEEcCHHHHHHH------HhhCCCCCCCcEEEecCCCc-----cccCHHHHHHHHHHHHH
Q 012322 85 IRFE--------DRTSERTLIKYLTDGVLLRE------ILSNPDLSPYSVIILDEAHE-----RSLNTDILLGLVKRLVN 145 (466)
Q Consensus 85 ~~~~--------~~~~~~~~i~~~T~g~l~~~------~~~~~~l~~~~~iIiDEah~-----~~~~~~~~~~~l~~i~~ 145 (466)
...+ .....+.+++|.||+.+.+. +........+.+|-+||+|| +.+.+|+- .+..+.+
T Consensus 169 ske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~--~l~ilkr 246 (695)
T KOG0353|consen 169 SKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYK--ALGILKR 246 (695)
T ss_pred cHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchH--HHHHHHH
Confidence 1110 11234578999999976532 22222566788999999999 33444431 1333444
Q ss_pred hhhcCceEEEEecccChhHH---HhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhc-CCCCCEEEecC
Q 012322 146 LRASKLKILITSATLDGEKV---SKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVR-EPEGDVLIFMT 221 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lVF~~ 221 (466)
..+ +..+++++||.+...+ .+.+.-..-+.+..........|........-++..+.+...... -.+...||||-
T Consensus 247 qf~-~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~ 325 (695)
T KOG0353|consen 247 QFK-GAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCF 325 (695)
T ss_pred hCC-CCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEe
Confidence 454 8899999999866433 333322112222211111122222222222222233333333332 23446799999
Q ss_pred CHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcc
Q 012322 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (466)
Q Consensus 222 t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~ 301 (466)
+++++++++..|+.. ++....||+.|.|++|.-+-+.|..|++.|+|||-++++|||.|+|++|||..+|
T Consensus 326 sq~d~ekva~alkn~----------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ 395 (695)
T KOG0353|consen 326 SQKDCEKVAKALKNH----------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLP 395 (695)
T ss_pred ccccHHHHHHHHHhc----------CccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccc
Confidence 999999999999987 8889999999999999999999999999999999999999999999999998888
Q ss_pred cceeecCCCCccccceeeecHHHHHH-------------------------------------------hccccCCC-CC
Q 012322 302 KQRQYNPSSGMYSLDVVQISKVQANQ-------------------------------------------RVGRAGRT-RP 337 (466)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~~~~Q-------------------------------------------r~GRaGR~-~~ 337 (466)
+ |.+.|.| ..|||||+ .+
T Consensus 396 k------------------sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~ 457 (695)
T KOG0353|consen 396 K------------------SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMK 457 (695)
T ss_pred h------------------hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCc
Confidence 7 5556666 88999999 78
Q ss_pred CeEEEecCccch
Q 012322 338 GKCYRLYPSTVY 349 (466)
Q Consensus 338 G~~~~l~~~~~~ 349 (466)
..|+..|.-.+.
T Consensus 458 a~cilyy~~~di 469 (695)
T KOG0353|consen 458 ADCILYYGFADI 469 (695)
T ss_pred ccEEEEechHHH
Confidence 999999866654
No 81
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=8.2e-29 Score=247.43 Aligned_cols=325 Identities=14% Similarity=0.131 Sum_probs=230.7
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
+-+..+|.+.+..+..|+.++|.|+|.+|||..+...+... ...+.+.+++.|.+++.+|.++.+.+.++.- +..
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKfRDFk~tF~Dv-gLl--- 370 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKFRDFKETFGDV-GLL--- 370 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchHHHHHHhcccc-cee---
Confidence 45778999999999999999999999999996665444432 2346799999999999999999998888632 222
Q ss_pred eEeeccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC-
Q 012322 84 AIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD- 161 (466)
Q Consensus 84 ~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~- 161 (466)
..+.+..+...++++|.+.|.+++.... .++++..+|+||+|- .-|. ...-++..++-..|+.+++|++|||.+
T Consensus 371 --TGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHY-iND~-eRGvVWEEViIMlP~HV~~IlLSATVPN 446 (1248)
T KOG0947|consen 371 --TGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHY-INDV-ERGVVWEEVIIMLPRHVNFILLSATVPN 446 (1248)
T ss_pred --ecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeee-cccc-cccccceeeeeeccccceEEEEeccCCC
Confidence 3345566789999999999998886665 788999999999993 2222 223345667777788999999999994
Q ss_pred hhHHHhhcCCC-----CeEeeCCCcCceeeeecCC-C-------CCchHH------------------------------
Q 012322 162 GEKVSKFFSNC-----PTLNVPGKLYPVEILHSKE-R-------PTSYLE------------------------------ 198 (466)
Q Consensus 162 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~-------~~~~~~------------------------------ 198 (466)
...|++|.+.. .++....|+.|.+.+.... . ...++.
T Consensus 447 ~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs 526 (1248)
T KOG0947|consen 447 TLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGS 526 (1248)
T ss_pred hHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccc
Confidence 46799999752 2344445666665432111 0 000000
Q ss_pred -----------------------H---HHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhh-------------
Q 012322 199 -----------------------S---ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS------------- 239 (466)
Q Consensus 199 -----------------------~---~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~------------- 239 (466)
. ..-.++.......--+++|||=+++.|++.+++|...--.
T Consensus 527 ~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~ 606 (1248)
T KOG0947|consen 527 QKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLS 606 (1248)
T ss_pred cccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 0 1111222222333348999999999999999999652100
Q ss_pred -----ccC-C----------CCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccc
Q 012322 240 -----LDE-G----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (466)
Q Consensus 240 -----~~~-~----------~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~ 303 (466)
+.. . ...--+++.||||+-|--+.-++-.|..|-+||++||.++++|||.|+-++|+++=. |
T Consensus 607 k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~-K- 684 (1248)
T KOG0947|consen 607 KAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLR-K- 684 (1248)
T ss_pred HHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehh-h-
Confidence 000 0 001225778999999999999999999999999999999999999998888876422 2
Q ss_pred eeecCCCCccccceeeecHHHHHHhccccCCC---CCCeEEEecCcc
Q 012322 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPST 347 (466)
Q Consensus 304 ~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~---~~G~~~~l~~~~ 347 (466)
.|... + .-...-+|.||+|||||. ..|.++.+....
T Consensus 685 --hDG~e-f-----R~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 685 --HDGNE-F-----RELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred --ccCcc-e-----eecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 22221 1 233566999999999998 578888877554
No 82
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.4e-28 Score=254.94 Aligned_cols=329 Identities=15% Similarity=0.163 Sum_probs=236.9
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
+.++.+|++.+..+..|+.++++||||||||.+...++..... .+.+++++.|.+++.+|.++.+...++-- ...+|.
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL 195 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-DGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGL 195 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-cCCceEeccchhhhhhhHHHHHHHHhhhh-hhhccc
Confidence 5678999999999999999999999999999665544443333 35569999999999999999998888743 233342
Q ss_pred eEeeccccCccceEEEcCHHHHHHHHhhC-CCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc-C
Q 012322 84 AIRFEDRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL-D 161 (466)
Q Consensus 84 ~~~~~~~~~~~~~i~~~T~g~l~~~~~~~-~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~-~ 161 (466)
...+...++++.++++|.+.|.+.+... ..+..+..||+||+|. .-+.+. .-.+...+-..+.++++|++|||+ |
T Consensus 196 -~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHy-i~D~eR-G~VWEE~Ii~lP~~v~~v~LSATv~N 272 (1041)
T COG4581 196 -MTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHY-IGDRER-GVVWEEVIILLPDHVRFVFLSATVPN 272 (1041)
T ss_pred -eecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeee-cccccc-chhHHHHHHhcCCCCcEEEEeCCCCC
Confidence 2224445677899999999999888766 4899999999999994 323322 223566666777788999999999 6
Q ss_pred hhHHHhhcC-----CCCeEeeCCCcCceeeeecCCC--------CCchHHHH----H-----------------------
Q 012322 162 GEKVSKFFS-----NCPTLNVPGKLYPVEILHSKER--------PTSYLESA----L----------------------- 201 (466)
Q Consensus 162 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~----~----------------------- 201 (466)
++.|+.|++ .+.++..+.|+.|...++.... ..++.... .
T Consensus 273 ~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~ 352 (1041)
T COG4581 273 AEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYAR 352 (1041)
T ss_pred HHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccc
Confidence 678999996 3556666777777766554331 01000000 0
Q ss_pred ---------------HHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHh-----------h--------hhccCCC---
Q 012322 202 ---------------KTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDK-----------I--------RSLDEGS--- 244 (466)
Q Consensus 202 ---------------~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~-----------~--------~~~~~~~--- 244 (466)
-.++........-++++|+=++..|+..+..+... + ..+....
T Consensus 353 ~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~l 432 (1041)
T COG4581 353 RTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDREL 432 (1041)
T ss_pred cccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcC
Confidence 01222222233458999999999999999888621 0 0111100
Q ss_pred ---------CCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCcccc
Q 012322 245 ---------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (466)
Q Consensus 245 ---------~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~ 315 (466)
...-+++.||+||-|..|..++..|..|-++|++||.+++.|+|.| .+.|+.+++.| ||..
T Consensus 433 p~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-artvv~~~l~K---~dG~------ 502 (1041)
T COG4581 433 PLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-ARTVVFTSLSK---FDGN------ 502 (1041)
T ss_pred cccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-ccceeeeeeEE---ecCC------
Confidence 0112466899999999999999999999999999999999999999 55555566554 4422
Q ss_pred ceeeecHHHHHHhccccCCC---CCCeEEEecCcc
Q 012322 316 DVVQISKVQANQRVGRAGRT---RPGKCYRLYPST 347 (466)
Q Consensus 316 ~~~~~s~~~~~Qr~GRaGR~---~~G~~~~l~~~~ 347 (466)
...|.+..+|.|+.|||||. ..|.++.+.++.
T Consensus 503 ~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 503 GHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred ceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 23688999999999999998 469988885443
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=2.9e-27 Score=247.45 Aligned_cols=297 Identities=20% Similarity=0.188 Sum_probs=181.6
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHh-cCcCCCcEEEEeCchhHHHHHHHHHHHHH----hC-CccCC
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQE----LG-VRLGE 79 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~-~~~~~~~~i~~~~p~~~l~~~~~~~~~~~----~~-~~~~~ 79 (466)
-+++|+.+.+....+..++|.||||+|||..+..++.. ....+...+++..|+++.++++++++.+. ++ ..+..
T Consensus 287 p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L 366 (878)
T PRK09694 287 PRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNLIL 366 (878)
T ss_pred ChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEe
Confidence 46778877555445778999999999999443333332 22233468999999999999999998642 22 11212
Q ss_pred eeeeeEe---ec--------------------c------ccCccceEEEcCHHHHHHHHhhCC--CCC----CCcEEEec
Q 012322 80 EVGYAIR---FE--------------------D------RTSERTLIKYLTDGVLLREILSNP--DLS----PYSVIILD 124 (466)
Q Consensus 80 ~~g~~~~---~~--------------------~------~~~~~~~i~~~T~g~l~~~~~~~~--~l~----~~~~iIiD 124 (466)
..|.... +. . +..--..++++|..+++...+... .+. .-++||||
T Consensus 367 ~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiD 446 (878)
T PRK09694 367 AHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVD 446 (878)
T ss_pred ecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEe
Confidence 2221100 00 0 000126899999998886554332 222 23599999
Q ss_pred CCCccccCHHHHHHHHHHHHHhh-hcCceEEEEecccChhHHHhhc---CCC---------CeEeeCCC----cC-----
Q 012322 125 EAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATLDGEKVSKFF---SNC---------PTLNVPGK----LY----- 182 (466)
Q Consensus 125 Eah~~~~~~~~~~~~l~~i~~~~-~~~~~ii~~SAT~~~~~~~~~~---~~~---------~~~~~~~~----~~----- 182 (466)
|+|. ++. +...++..+++.. ..+.++|+||||++.....+++ +.. |.+..... .+
T Consensus 447 EVHA--yD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~ 523 (878)
T PRK09694 447 EVHA--YDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAH 523 (878)
T ss_pred chhh--CCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecccc
Confidence 9994 444 3333444444432 2367899999999875432222 211 11111000 00
Q ss_pred ------ceeeeecCC--CCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeec
Q 012322 183 ------PVEILHSKE--RPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLH 254 (466)
Q Consensus 183 ------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h 254 (466)
+..+..... .........++.+.... ..++++||||||++.++++++.|++... ....+..+|
T Consensus 524 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-------~~~~v~llH 594 (878)
T PRK09694 524 PEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNN-------TQVDIDLFH 594 (878)
T ss_pred ccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCC-------CCceEEEEe
Confidence 000100000 00011122333333322 3457899999999999999999987521 135789999
Q ss_pred CCCCHHHHh----cccCCC-CCCc---ceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHH
Q 012322 255 GSLPPEMQV----RVFSPP-PPNC---RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQAN 326 (466)
Q Consensus 255 ~~l~~~~r~----~~~~~f-~~g~---~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~ 326 (466)
|+++..+|. ++++.| ++|+ .+|||||+++|+|+|++ ++++|... .+..+++
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdl--------------------aPidsLi 653 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQL--------------------CPVDLLF 653 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECC--------------------CCHHHHH
Confidence 999999994 456677 5665 47999999999999995 78888522 2456899
Q ss_pred HhccccCCC
Q 012322 327 QRVGRAGRT 335 (466)
Q Consensus 327 Qr~GRaGR~ 335 (466)
||+||+||.
T Consensus 654 QRaGR~~R~ 662 (878)
T PRK09694 654 QRLGRLHRH 662 (878)
T ss_pred HHHhccCCC
Confidence 999999998
No 84
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=5.8e-29 Score=228.65 Aligned_cols=307 Identities=20% Similarity=0.172 Sum_probs=219.5
Q ss_pred hHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCc-CCCcEEEEeCchhHHHHHHHHHHHH---HhCCccCCeee
Q 012322 9 YEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQ---ELGVRLGEEVG 82 (466)
Q Consensus 9 ~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~---~~~~~~~~~~g 82 (466)
+|..-+..+.++++++-.|-|||||| .++|++...... ..|.+.+++.|++.++.|..+.+.+ ..+......+|
T Consensus 47 iqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~g 126 (529)
T KOG0337|consen 47 IQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVG 126 (529)
T ss_pred hhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcc
Confidence 45566678889999999999999999 455555443332 3456999999999999998776543 23344444555
Q ss_pred eeEeeccc--cCccceEEEcCHHHHHHHHhhC-CCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecc
Q 012322 83 YAIRFEDR--TSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (466)
Q Consensus 83 ~~~~~~~~--~~~~~~i~~~T~g~l~~~~~~~-~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (466)
+....+.. ...+.+|+++|||.+....... ..++.+.++|+||++ +.+.++|... +..++...+.+.+.++||||
T Consensus 127 gD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeq-l~e~l~rl~~~~QTllfSat 204 (529)
T KOG0337|consen 127 GDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQ-LHEILSRLPESRQTLLFSAT 204 (529)
T ss_pred cchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHH-HHHHHHhCCCcceEEEEecc
Confidence 33222222 2357999999999987765433 368889999999999 8888888777 67777777778899999999
Q ss_pred cChhH--HHh-hcCCCCeEee--CCCcC-ceeeeecCCCCCchHHHHHHHHHHHhhc-CCCCCEEEecCCHHHHHHHHHH
Q 012322 160 LDGEK--VSK-FFSNCPTLNV--PGKLY-PVEILHSKERPTSYLESALKTAIDIHVR-EPEGDVLIFMTGQDDIEKLVSK 232 (466)
Q Consensus 160 ~~~~~--~~~-~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lVF~~t~~~~~~l~~~ 232 (466)
++... +++ -+.++..+.+ +.+.. .++..+..... +.....++.+... -.+.+++||++|+.+++-+...
T Consensus 205 lp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~----a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~l 280 (529)
T KOG0337|consen 205 LPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK----AEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGL 280 (529)
T ss_pred CchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc----HHHHHHHHHHHhccccccceeEEecccchHHHHHHH
Confidence 98652 222 1222222221 11111 11111111111 1122222222221 1245899999999999999999
Q ss_pred HHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCc
Q 012322 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (466)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~ 312 (466)
|... ++.+..++|.|.++-|..-...|+.++..++|.|+++++|+|||-.+.||++++|....
T Consensus 281 l~~~----------g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~k------- 343 (529)
T KOG0337|consen 281 LRDF----------GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDK------- 343 (529)
T ss_pred HHhc----------CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCc-------
Confidence 9887 78888899999999999999999999999999999999999999999999999875322
Q ss_pred cccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 313 ~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
-|+||.||+.|. +.|.+|-++...+.
T Consensus 344 -----------lFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 344 -----------LFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred -----------eEEEEecchhhccccceEEEEEecccc
Confidence 567999999998 58999988866544
No 85
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.96 E-value=1e-27 Score=259.63 Aligned_cols=275 Identities=15% Similarity=0.147 Sum_probs=182.1
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHh---CCccCC--
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGE-- 79 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~---~~~~~~-- 79 (466)
..++.|...+..+..|++++++||||||||+++..++.... ..+.+++++.|+++++.|+++.+.+.. +.....
T Consensus 78 ~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~-~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~ 156 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLA-KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIG 156 (1171)
T ss_pred CCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 56789999999999999999999999999965444433322 236789999999999999998876544 222211
Q ss_pred -eeeeeEeecc-------ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccC-----------HHHHHHHH
Q 012322 80 -EVGYAIRFED-------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLN-----------TDILLGLV 140 (466)
Q Consensus 80 -~~g~~~~~~~-------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~-----------~~~~~~~l 140 (466)
..|. ..... ......+|+++||+.+.+.+.... .+++++|+|||| +.++ .+|..+.+
T Consensus 157 ~~~Gg-~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD-~~L~~~k~vd~il~llGF~~e~i 232 (1171)
T TIGR01054 157 AYHSR-LPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVD-ALLKASKNVDKLLKLLGFSEELI 232 (1171)
T ss_pred eecCC-CCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChH-hhhhccccHHHHHHHcCCCHHHH
Confidence 1121 11111 112358999999999987765422 289999999999 4544 12211112
Q ss_pred HHH----------------------HHhhhcCc--eEEEEeccc-ChhHHHhhcCCCCeEeeCCCcC---ceeeeecCCC
Q 012322 141 KRL----------------------VNLRASKL--KILITSATL-DGEKVSKFFSNCPTLNVPGKLY---PVEILHSKER 192 (466)
Q Consensus 141 ~~i----------------------~~~~~~~~--~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 192 (466)
..+ ++..+.+. .++++|||. +...-..++.+...+.+..... .+...|....
T Consensus 233 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~ 312 (1171)
T TIGR01054 233 EKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDE 312 (1171)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEEEEecc
Confidence 221 11222233 367789995 4332224444433344433221 2222222111
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCEEEecCCH---HHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCC
Q 012322 193 PTSYLESALKTAIDIHVREPEGDVLIFMTGQ---DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP 269 (466)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~---~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f 269 (466)
... .. +..+... .+.++||||+++ +.|+.+++.|.+. ++.+..+||+++. .+++.|
T Consensus 313 --~~~-~~---L~~ll~~-l~~~~IVFv~t~~~~~~a~~l~~~L~~~----------g~~a~~lhg~~~~----~~l~~F 371 (1171)
T TIGR01054 313 --DLK-ET---LLEIVKK-LGTGGIVYVSIDYGKEKAEEIAEFLENH----------GVKAVAYHATKPK----EDYEKF 371 (1171)
T ss_pred --cHH-HH---HHHHHHH-cCCCEEEEEeccccHHHHHHHHHHHHhC----------CceEEEEeCCCCH----HHHHHH
Confidence 111 12 2222222 235799999999 9999999999876 8899999999973 578999
Q ss_pred CCCcceEEEEe----cccccccccCC-eEEEEeCCccccee
Q 012322 270 PPNCRRFIVST----NIAETSLTVDG-VVYVIDCGYVKQRQ 305 (466)
Q Consensus 270 ~~g~~~ilvaT----~~~~~Gidip~-v~~VI~~g~~~~~~ 305 (466)
++|+.+||||| ++++||||+|+ |++||++|.|+...
T Consensus 372 r~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 372 AEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred HcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 99999999995 99999999999 89999999998753
No 86
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=4.5e-27 Score=239.43 Aligned_cols=303 Identities=16% Similarity=0.154 Sum_probs=193.5
Q ss_pred CCchHhHHHHHHHHhcC---CEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCe
Q 012322 4 LPILQYEETIVETVEQN---PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~---~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 80 (466)
..++.||++.++.+..+ +..+|+.|||+|||.+...++... +..+++++|+..++.|+.+.+.+.........
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I 329 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQI 329 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceE
Confidence 45789999998887643 367889999999996555554433 35688999999999999999987765443322
Q ss_pred eeeeEeeccccCccceEEEcCHHHHHHHH---------hhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCc
Q 012322 81 VGYAIRFEDRTSERTLIKYLTDGVLLREI---------LSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (466)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~~~T~g~l~~~~---------~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~ 151 (466)
..+.............|+++|+.++.... +....-..+++||+||+| +.. ... .+.++.... ..
T Consensus 330 ~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH-~lp-A~~----fr~il~~l~-a~ 402 (732)
T TIGR00603 330 CRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH-VVP-AAM----FRRVLTIVQ-AH 402 (732)
T ss_pred EEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc-ccc-HHH----HHHHHHhcC-cC
Confidence 22111111111234679999998775321 111122468999999999 332 222 233333333 44
Q ss_pred eEEEEecccChh--H---HHhhcCCCCeEee-------CCCcCceee--eecCCCCC---chH--------------HHH
Q 012322 152 KILITSATLDGE--K---VSKFFSNCPTLNV-------PGKLYPVEI--LHSKERPT---SYL--------------ESA 200 (466)
Q Consensus 152 ~ii~~SAT~~~~--~---~~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~---~~~--------------~~~ 200 (466)
..+++|||+..+ . +..++ ++.++.. .|-..++.. .+.+.... +|+ ..+
T Consensus 403 ~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K 481 (732)
T TIGR00603 403 CKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNK 481 (732)
T ss_pred cEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHH
Confidence 679999999421 1 22233 2333322 122222221 11111100 010 011
Q ss_pred HH---HHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCC-cceE
Q 012322 201 LK---TAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRRF 276 (466)
Q Consensus 201 ~~---~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g-~~~i 276 (466)
+. .++..+. ..+.++||||.+...++.++..|. +..+||+++..+|.++++.|+.| .+++
T Consensus 482 ~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~---------------~~~I~G~ts~~ER~~il~~Fr~~~~i~v 545 (732)
T TIGR00603 482 FRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLG---------------KPFIYGPTSQQERMQILQNFQHNPKVNT 545 (732)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcC---------------CceEECCCCHHHHHHHHHHHHhCCCccE
Confidence 12 2232222 356799999999998888877652 23489999999999999999875 7899
Q ss_pred EEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCC-CeE-------EEecCccc
Q 012322 277 IVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP-GKC-------YRLYPSTV 348 (466)
Q Consensus 277 lvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~-G~~-------~~l~~~~~ 348 (466)
||+|+++.+|||+|++++||+...+ +-|..+|+||+||++|.++ |.+ |.|++++.
T Consensus 546 Lv~SkVgdeGIDlP~a~vvI~~s~~-----------------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 546 IFLSKVGDTSIDLPEANVLIQISSH-----------------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred EEEecccccccCCCCCCEEEEeCCC-----------------CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 9999999999999999999984432 1277899999999999954 333 88887776
Q ss_pred hhh
Q 012322 349 YHD 351 (466)
Q Consensus 349 ~~~ 351 (466)
.+.
T Consensus 609 ~E~ 611 (732)
T TIGR00603 609 QEM 611 (732)
T ss_pred hHH
Confidence 544
No 87
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=4.8e-27 Score=211.07 Aligned_cols=290 Identities=19% Similarity=0.248 Sum_probs=198.0
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhC-CccCCeeeeeEeecc
Q 012322 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-VRLGEEVGYAIRFED 89 (466)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 89 (466)
+.+++.+.+.+.++|.|-||+|||-++-+.+.... ..|.++.+..|+...+.+++.++.+.+. .......| ++
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al-~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg-----~S 180 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL-NQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYG-----DS 180 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH-hcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEec-----CC
Confidence 35778889999999999999999955444333222 3577899999999999999999988775 45444444 22
Q ss_pred ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 90 RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 90 ~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
...-...++++|..++++.- +.++++||||+|.-.+..|-.+. -.+.+.++.....|.+|||++.+...+..
T Consensus 181 ~~~fr~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~--~Av~~ark~~g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 181 DSYFRAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQ--YAVKKARKKEGATIYLTATPTKKLERKIL 252 (441)
T ss_pred chhccccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHH--HHHHHhhcccCceEEEecCChHHHHHHhh
Confidence 22234789999999998853 46899999999965554444333 23334444577899999998866544444
Q ss_pred CC-CCeEeeCCCc----CceeeeecCCCCCchH-----HHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhh
Q 012322 170 SN-CPTLNVPGKL----YPVEILHSKERPTSYL-----ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS 239 (466)
Q Consensus 170 ~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~ 239 (466)
.+ ...+.++.|. .|+.-..-.......+ ..++...+..+. ..+.+++||+|+.+..+++++.|++.+
T Consensus 253 ~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~-~~~~P~liF~p~I~~~eq~a~~lk~~~-- 329 (441)
T COG4098 253 KGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR-KTGRPVLIFFPEIETMEQVAAALKKKL-- 329 (441)
T ss_pred hCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH-hcCCcEEEEecchHHHHHHHHHHHhhC--
Confidence 32 2334444432 2222111111111111 112222222222 234699999999999999999997774
Q ss_pred ccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceee
Q 012322 240 LDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQ 319 (466)
Q Consensus 240 ~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~ 319 (466)
+...++..|+. ...|.+..+.|++|++++|++|+++|||+++|+|++.|- ++.. ..
T Consensus 330 ------~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl---------gaeh-------~v 385 (441)
T COG4098 330 ------PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL---------GAEH-------RV 385 (441)
T ss_pred ------Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe---------cCCc-------cc
Confidence 45667888876 467888899999999999999999999999999998763 1111 22
Q ss_pred ecHHHHHHhccccCCC---CCCeEE
Q 012322 320 ISKVQANQRVGRAGRT---RPGKCY 341 (466)
Q Consensus 320 ~s~~~~~Qr~GRaGR~---~~G~~~ 341 (466)
.+.+..+|.+||+||. ..|..+
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~ 410 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVL 410 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEE
Confidence 3788999999999998 346543
No 88
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=8.2e-29 Score=241.80 Aligned_cols=327 Identities=14% Similarity=0.182 Sum_probs=232.7
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
+-+.++|...+..+.+++.+++.|.|.+|||..+.-.+.... ....+++++.|.+++.+|.++.+..+++ .+|...|
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sL-r~kQRVIYTSPIKALSNQKYREl~~EF~-DVGLMTG- 204 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSL-REKQRVIYTSPIKALSNQKYRELLEEFK-DVGLMTG- 204 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHH-HhcCeEEeeChhhhhcchhHHHHHHHhc-ccceeec-
Confidence 457889999999999999999999999999955543333222 2456999999999999999999988875 3455555
Q ss_pred eEeeccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccCh
Q 012322 84 AIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (466)
Q Consensus 84 ~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~ 162 (466)
+-..++++..+++|.+.|...+.... .+..+..+|+||+| .+-|.+... ++..-+-..|.+.+.+++|||+|+
T Consensus 205 ----DVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-YMRDkERGV-VWEETIIllP~~vr~VFLSATiPN 278 (1041)
T KOG0948|consen 205 ----DVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-YMRDKERGV-VWEETIILLPDNVRFVFLSATIPN 278 (1041)
T ss_pred ----ceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh-hccccccce-eeeeeEEeccccceEEEEeccCCC
Confidence 22235677889999999988885554 78999999999999 333333211 123333345669999999999954
Q ss_pred -hHHHhhcCC-----CCeEeeCCCcCceeeeecCC----------CCCchHHHHHH------------------------
Q 012322 163 -EKVSKFFSN-----CPTLNVPGKLYPVEILHSKE----------RPTSYLESALK------------------------ 202 (466)
Q Consensus 163 -~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~------------------------ 202 (466)
..|++|... +.++...-|+.|..-+..+. ...++.++.+.
T Consensus 279 A~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~k 358 (1041)
T KOG0948|consen 279 ARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRK 358 (1041)
T ss_pred HHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccccccccc
Confidence 679999842 55666666666655432111 11112222221
Q ss_pred --------------HHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhh------------------ccCC-------
Q 012322 203 --------------TAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS------------------LDEG------- 243 (466)
Q Consensus 203 --------------~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~------------------~~~~------- 243 (466)
.++.........++|||+=++++|+..|-.+.+.... +++.
T Consensus 359 G~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqi 438 (1041)
T KOG0948|consen 359 GGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQI 438 (1041)
T ss_pred CCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHH
Confidence 2222222333468999999999999999988653211 1100
Q ss_pred ----CCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceee
Q 012322 244 ----SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQ 319 (466)
Q Consensus 244 ----~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~ 319 (466)
....-++..|||||-|--++.++-.|.+|-+++|+||.++++|+|.|+-++|+- ....||. -...|
T Consensus 439 e~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT----~~rKfDG------~~fRw 508 (1041)
T KOG0948|consen 439 ENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT----AVRKFDG------KKFRW 508 (1041)
T ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----eccccCC------cceee
Confidence 011335777999999999999988999999999999999999999997666653 2223443 34579
Q ss_pred ecHHHHHHhccccCCC---CCCeEEEecCccch
Q 012322 320 ISKVQANQRVGRAGRT---RPGKCYRLYPSTVY 349 (466)
Q Consensus 320 ~s~~~~~Qr~GRaGR~---~~G~~~~l~~~~~~ 349 (466)
+|--+|+||.|||||. ..|.|+.+.++..-
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDekm~ 541 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKME 541 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCcCC
Confidence 9999999999999998 57999999877643
No 89
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.95 E-value=1.7e-26 Score=240.06 Aligned_cols=312 Identities=18% Similarity=0.202 Sum_probs=200.3
Q ss_pred CCchHhHHHHHHHHhcC---CEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCe
Q 012322 4 LPILQYEETIVETVEQN---PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~---~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 80 (466)
..+++.|+++++.+.++ +++++.|+||||||.....++.... ..+..++++.|+++++.|+.+++.+.++..+...
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~ 221 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRARFGAPVAVL 221 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEE
Confidence 34788999999999874 7899999999999943332322221 2367899999999999999999988887655444
Q ss_pred eeeeEeec------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHH-----HHHHHHHHHHhhhc
Q 012322 81 VGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLRAS 149 (466)
Q Consensus 81 ~g~~~~~~------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~-----~~~~l~~i~~~~~~ 149 (466)
.|.....+ .......+|+++|++.+. ..+.++++|||||+|..+...+. ... +.... ....
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~-va~~r-a~~~ 293 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD-LAVVR-AKLE 293 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHH-HHHHH-hhcc
Confidence 44221111 112345789999997653 24688999999999964332221 111 11122 2224
Q ss_pred CceEEEEecccChhHHHhhcC-CCCeEeeCCCc----Cc-eeeeecCCC----C-CchHHHHHHHHHHHhhcCCCCCEEE
Q 012322 150 KLKILITSATLDGEKVSKFFS-NCPTLNVPGKL----YP-VEILHSKER----P-TSYLESALKTAIDIHVREPEGDVLI 218 (466)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~~~~-~~~~~~~~~~~----~~-~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~lV 218 (466)
+.+++++|||++.+.+..... ....+....+. .| +.+...... . .......++.+.+.. +.+.++||
T Consensus 294 ~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll 371 (679)
T PRK05580 294 NIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVLL 371 (679)
T ss_pred CCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEEE
Confidence 889999999998776654432 22333333322 11 222221110 0 001122223232222 23458888
Q ss_pred ecCCHH------------------------------------------------------------HHHHHHHHHHHhhh
Q 012322 219 FMTGQD------------------------------------------------------------DIEKLVSKLEDKIR 238 (466)
Q Consensus 219 F~~t~~------------------------------------------------------------~~~~l~~~L~~~~~ 238 (466)
|+|++. .++++++.|.+.+
T Consensus 372 ~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f- 450 (679)
T PRK05580 372 FLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF- 450 (679)
T ss_pred EEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC-
Confidence 887632 4556666666654
Q ss_pred hccCCCCCCeEEEeecCCCC--HHHHhcccCCCCCCcceEEEEecccccccccCCeEEE--EeCCccc-ceeecCCCCcc
Q 012322 239 SLDEGSCMDAVILPLHGSLP--PEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV--IDCGYVK-QRQYNPSSGMY 313 (466)
Q Consensus 239 ~~~~~~~~~~~v~~~h~~l~--~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~V--I~~g~~~-~~~~~~~~~~~ 313 (466)
++..+..+|+++. .++++++++.|++|+.+|||+|+++++|+|+|+|++| +|.+.+- .+.|+..
T Consensus 451 -------p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~---- 519 (679)
T PRK05580 451 -------PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRAS---- 519 (679)
T ss_pred -------CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchH----
Confidence 4678899999986 4678899999999999999999999999999999988 4544331 1112111
Q ss_pred ccceeeecHHHHHHhccccCCC-CCCeEEEe
Q 012322 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRL 343 (466)
Q Consensus 314 ~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l 343 (466)
--....+.|++||+||. .+|.++..
T Consensus 520 -----Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 520 -----ERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred -----HHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 12356889999999996 78988854
No 90
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.95 E-value=8.5e-26 Score=230.20 Aligned_cols=108 Identities=18% Similarity=0.129 Sum_probs=94.0
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccC
Q 012322 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (466)
Q Consensus 211 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip 290 (466)
..+.++||||+|++.++.++..|.+. ++.+..+||++..+++..+.+++++| .|+||||+++||+||+
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~----------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~ 489 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLRE----------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIK 489 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHC----------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCC
Confidence 34569999999999999999999886 78888999999999998888888877 7999999999999999
Q ss_pred ---------CeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 291 ---------GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 291 ---------~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
++.+|+++..|. .... .||+||+||. .+|.++.+++.++.
T Consensus 490 l~~~v~~~GGL~vIit~~~ps------------------~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 490 LGKGVAELGGLAVIGTERMEN------------------SRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCccccccCCeEEEEecCCCC------------------cHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 999999977654 2223 7999999999 79999999887654
No 91
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5.1e-26 Score=234.02 Aligned_cols=108 Identities=20% Similarity=0.177 Sum_probs=96.7
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEeccccccccc--
Q 012322 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV-- 289 (466)
Q Consensus 212 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi-- 289 (466)
.+.++||||+|++.++.++..|.+. ++.+..+||++...++..+..++++| +|+||||+++||+||
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~----------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l 494 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEA----------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKL 494 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC----------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCc
Confidence 4679999999999999999999886 78889999999999988888888776 799999999999999
Q ss_pred -CCeE-----EEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 290 -DGVV-----YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 290 -p~v~-----~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
|+|. +||++++|. |...|.||+||+||. .+|.++.+++.++.
T Consensus 495 ~~~V~~~GGL~VI~~d~p~------------------s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 495 GEGVHELGGLAVIGTERME------------------SRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred ccccccccCcEEEeccCCC------------------CHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 7999 999988876 667999999999999 79999999886654
No 92
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=7.6e-26 Score=227.92 Aligned_cols=106 Identities=24% Similarity=0.205 Sum_probs=91.2
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccC--
Q 012322 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD-- 290 (466)
Q Consensus 213 ~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip-- 290 (466)
+.++||||+|++.++.+++.|.+. ++.+..+||+++..++..+...+.+ ..|+||||+++||+||+
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~----------gi~~~~Lhg~~~~rE~~ii~~ag~~--g~VlVATdmAgRGtDI~l~ 540 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREA----------GLPHQVLNAKQDAEEAAIVARAGQR--GRITVATNMAGRGTDIKLE 540 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC----------CCCEEEeeCCcHHHHHHHHHHcCCC--CcEEEEccchhcccCcCCc
Confidence 468999999999999999999886 8889999999876666655555554 46999999999999999
Q ss_pred -CeE-----EEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 291 -GVV-----YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 291 -~v~-----~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
+|. +||++++|. |...|.||+||+||. .+|.++.+++.++
T Consensus 541 ~~V~~~GGLhVI~~d~P~------------------s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 541 PGVAARGGLHVILTERHD------------------SARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred cchhhcCCCEEEEcCCCC------------------CHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 776 999988876 666899999999999 7999999998765
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2.6e-26 Score=230.44 Aligned_cols=293 Identities=16% Similarity=0.169 Sum_probs=184.9
Q ss_pred EEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeec------cccCccceE
Q 012322 24 VVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE------DRTSERTLI 97 (466)
Q Consensus 24 ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~i 97 (466)
++.||||||||.....++... ...+..++++.|+..++.|+++++.+.++..+....+.....+ .....+.+|
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 468999999994433333222 2246689999999999999999998888765443333111101 112345789
Q ss_pred EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHH-----HHHHHHHHHHhhhcCceEEEEecccChhHHHhhcCCC
Q 012322 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNC 172 (466)
Q Consensus 98 ~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~-----~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~~~~ 172 (466)
+++|...+. ..+.++++|||||.|+.++..+. ... +....... .+.++|++|||++.+.+.....+.
T Consensus 80 VVGTrsalf------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~-~a~~ra~~-~~~~vil~SATPsles~~~~~~g~ 151 (505)
T TIGR00595 80 VIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARD-VAVYRAKK-FNCPVVLGSATPSLESYHNAKQKA 151 (505)
T ss_pred EECChHHHc------CcccCCCEEEEECCCccccccccCCCCcHHH-HHHHHHHh-cCCCEEEEeCCCCHHHHHHHhcCC
Confidence 999987553 24778999999999964433221 111 22222223 388999999998877665544322
Q ss_pred -CeEeeCC----CcCc-eeeeecCCCC--CchHHHHHHHHHHHhhcCCCCCEEEecCCHHH-------------------
Q 012322 173 -PTLNVPG----KLYP-VEILHSKERP--TSYLESALKTAIDIHVREPEGDVLIFMTGQDD------------------- 225 (466)
Q Consensus 173 -~~~~~~~----~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~------------------- 225 (466)
..+.... ...| +++....... .......++.+.+.. ..++++|||+|++.-
T Consensus 152 ~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~ 229 (505)
T TIGR00595 152 YRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCD 229 (505)
T ss_pred eEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCC
Confidence 2222221 1111 2222221111 111222333333332 235689999887653
Q ss_pred -----------------------------------------HHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHH--
Q 012322 226 -----------------------------------------IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQ-- 262 (466)
Q Consensus 226 -----------------------------------------~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r-- 262 (466)
++++.+.|.+.+ ++..+..+|++++...+
T Consensus 230 ~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f--------p~~~v~~~d~d~~~~~~~~ 301 (505)
T TIGR00595 230 VSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF--------PGARIARIDSDTTSRKGAH 301 (505)
T ss_pred CceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC--------CCCcEEEEecccccCccHH
Confidence 567777777764 47789999999987665
Q ss_pred hcccCCCCCCcceEEEEecccccccccCCeEEEE--eCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCe
Q 012322 263 VRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVI--DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGK 339 (466)
Q Consensus 263 ~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI--~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~ 339 (466)
.++++.|++|+.+|||+|+++++|+|+|+|+.|+ |.+..- +..++...--....+.|++|||||. .+|.
T Consensus 302 ~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l--------~~pd~ra~E~~~~ll~q~~GRagR~~~~g~ 373 (505)
T TIGR00595 302 EALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGL--------HSPDFRAAERGFQLLTQVAGRAGRAEDPGQ 373 (505)
T ss_pred HHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccc--------cCcccchHHHHHHHHHHHHhccCCCCCCCE
Confidence 8899999999999999999999999999999874 544311 1111111112456789999999997 7888
Q ss_pred EEEe
Q 012322 340 CYRL 343 (466)
Q Consensus 340 ~~~l 343 (466)
++..
T Consensus 374 viiq 377 (505)
T TIGR00595 374 VIIQ 377 (505)
T ss_pred EEEE
Confidence 8843
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=1.1e-25 Score=221.78 Aligned_cols=301 Identities=15% Similarity=0.192 Sum_probs=208.4
Q ss_pred chHhHHHHHHHHhcC----C--EEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhC---Cc
Q 012322 6 ILQYEETIVETVEQN----P--VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---VR 76 (466)
Q Consensus 6 i~~~q~~i~~~i~~~----~--~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~---~~ 76 (466)
+-.-|+.+++.|..+ . +-+++|.-|||||..+...+... ...|..+....||..+|.|.+..+.+.+. +.
T Consensus 263 LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~ 341 (677)
T COG1200 263 LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIR 341 (677)
T ss_pred ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCe
Confidence 445666666666543 2 44899999999995554444433 33577888999999999999998876654 34
Q ss_pred cCCeeeeeEee------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-
Q 012322 77 LGEEVGYAIRF------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS- 149 (466)
Q Consensus 77 ~~~~~g~~~~~------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~- 149 (466)
++...|....- +...+...++++.|...++ ....++++.++|+||=| |. ... -+..+.....
T Consensus 342 V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ----d~V~F~~LgLVIiDEQH-RF-GV~-----QR~~L~~KG~~ 410 (677)
T COG1200 342 VALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ----DKVEFHNLGLVIIDEQH-RF-GVH-----QRLALREKGEQ 410 (677)
T ss_pred EEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh----cceeecceeEEEEeccc-cc-cHH-----HHHHHHHhCCC
Confidence 33333311111 1223467899999985433 34478899999999999 32 111 1222223333
Q ss_pred CceEEEEecccChhHHH-hhcCCCCe---EeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHH
Q 012322 150 KLKILITSATLDGEKVS-KFFSNCPT---LNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (466)
Q Consensus 150 ~~~ii~~SAT~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~ 225 (466)
...++.||||+-+..++ ..|++-.+ -+.+....|+...+..... ....++.+..... .+.++.|.||-.++
T Consensus 411 ~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~---~~~v~e~i~~ei~--~GrQaY~VcPLIeE 485 (677)
T COG1200 411 NPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHER---RPEVYERIREEIA--KGRQAYVVCPLIEE 485 (677)
T ss_pred CCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEecccc---HHHHHHHHHHHHH--cCCEEEEEeccccc
Confidence 57899999999666654 56665443 3445555677766655433 3333444433332 46689999987664
Q ss_pred --------HHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEe
Q 012322 226 --------IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVID 297 (466)
Q Consensus 226 --------~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~ 297 (466)
++.+++.|+..+ +++++..+||.|+++++.+++++|++|+++|||||++.|.|||+|+.++.|-
T Consensus 486 SE~l~l~~a~~~~~~L~~~~--------~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI 557 (677)
T COG1200 486 SEKLELQAAEELYEELKSFL--------PELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI 557 (677)
T ss_pred cccchhhhHHHHHHHHHHHc--------ccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE
Confidence 455666666443 5788999999999999999999999999999999999999999999998774
Q ss_pred CCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 298 ~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
+|+++ .-.++..|-.||+||. .++.|+.+|....
T Consensus 558 --------e~AER---------FGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 558 --------ENAER---------FGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred --------echhh---------hhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 34433 2445778999999999 7899999996654
No 95
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.94 E-value=4.4e-25 Score=218.98 Aligned_cols=288 Identities=17% Similarity=0.196 Sum_probs=193.6
Q ss_pred CCchHhHHHHHHHHhc----CCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCC
Q 012322 4 LPILQYEETIVETVEQ----NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~----~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 79 (466)
...+.+|++.++++.. ++..+++.|||+|||.+...++..... .+++++|++.++.|+++++.+..+.. .
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~--~ 108 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLN--D 108 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC----CEEEEECcHHHHHHHHHHHHHhcCCc--c
Confidence 4578999999999998 888999999999999887777776543 39999999999999998887776654 1
Q ss_pred eeeeeEeeccccCccceEEEcCHHHHHHH-HhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCce-EEEEe
Q 012322 80 EVGYAIRFEDRTSERTLIKYLTDGVLLRE-ILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK-ILITS 157 (466)
Q Consensus 80 ~~g~~~~~~~~~~~~~~i~~~T~g~l~~~-~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~-ii~~S 157 (466)
.+|........... ..|.++|...+.+. .+......++++||+||+| +..... ...+...+ . ... ++++|
T Consensus 109 ~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~H-h~~a~~-~~~~~~~~----~-~~~~~LGLT 180 (442)
T COG1061 109 EIGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVH-HLPAPS-YRRILELL----S-AAYPRLGLT 180 (442)
T ss_pred ccceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccc-cCCcHH-HHHHHHhh----h-cccceeeec
Confidence 12211111111111 57999999988876 2333344479999999999 343332 22222322 2 333 99999
Q ss_pred cccChhH---H---HhhcCCCCeEeeC-------CCcCceeeeecCCC-----CCch------H----------------
Q 012322 158 ATLDGEK---V---SKFFSNCPTLNVP-------GKLYPVEILHSKER-----PTSY------L---------------- 197 (466)
Q Consensus 158 AT~~~~~---~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-----~~~~------~---------------- 197 (466)
||+...+ . ..+++ ..++... +...|......... ...+ .
T Consensus 181 ATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (442)
T COG1061 181 ATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEA 259 (442)
T ss_pred cCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHH
Confidence 9974321 2 22232 2233222 11122211111000 0000 0
Q ss_pred -------HHHHHHHHHHhhcC-CCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCC
Q 012322 198 -------ESALKTAIDIHVRE-PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP 269 (466)
Q Consensus 198 -------~~~~~~~~~~~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f 269 (466)
......+....... ...+++||+.+..+++.++..+... +. +..+.+..+.++|..+++.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~----------~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 260 RRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP----------GI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred HHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC----------Cc-eEEEECCCCHHHHHHHHHHH
Confidence 00111111122222 3569999999999999999988654 44 78899999999999999999
Q ss_pred CCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC
Q 012322 270 PPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (466)
Q Consensus 270 ~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~ 335 (466)
+.|.+++||++.++..|+|+|+++++|... ..-|...|.||+||.-|.
T Consensus 329 r~g~~~~lv~~~vl~EGvDiP~~~~~i~~~------------------~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 329 RTGGIKVLVTVKVLDEGVDIPDADVLIILR------------------PTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HcCCCCEEEEeeeccceecCCCCcEEEEeC------------------CCCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999622 244888999999999995
No 96
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=4.5e-25 Score=229.09 Aligned_cols=293 Identities=18% Similarity=0.203 Sum_probs=214.3
Q ss_pred HHHHHHhcCC--EEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeecc
Q 012322 12 TIVETVEQNP--VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED 89 (466)
Q Consensus 12 ~i~~~i~~~~--~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 89 (466)
+|.+.+.+++ +=+|||.-|-|||-.+...+..... .|+.+.+++||..+++|.++.+.+.+.-. ...++...++..
T Consensus 605 eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-~GKQVAvLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s 682 (1139)
T COG1197 605 EVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-DGKQVAVLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRS 682 (1139)
T ss_pred HHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-CCCeEEEEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCC
Confidence 4445555665 4599999999999665555554443 46889999999999999999998776422 223443444432
Q ss_pred c----------cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecc
Q 012322 90 R----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (466)
Q Consensus 90 ~----------~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (466)
. ..+..+|++.|.. ++..+..+.+++++||||=|--++.. |.-++..+.++.++-||||
T Consensus 683 ~kE~~~il~~la~G~vDIvIGTHr----LL~kdv~FkdLGLlIIDEEqRFGVk~-------KEkLK~Lr~~VDvLTLSAT 751 (1139)
T COG1197 683 AKEQKEILKGLAEGKVDIVIGTHR----LLSKDVKFKDLGLLIIDEEQRFGVKH-------KEKLKELRANVDVLTLSAT 751 (1139)
T ss_pred HHHHHHHHHHHhcCCccEEEechH----hhCCCcEEecCCeEEEechhhcCccH-------HHHHHHHhccCcEEEeeCC
Confidence 2 2467899999983 44556678999999999999322222 2222223348899999999
Q ss_pred cChhHHHhhcCC---CCeEeeC-CCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHH
Q 012322 160 LDGEKVSKFFSN---CPTLNVP-GKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLED 235 (466)
Q Consensus 160 ~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~ 235 (466)
+-+..+.--+.+ -.++..+ .+.+|+..+..+....-..++... .+ ..+|++-.-.|.+++++++++.|++
T Consensus 752 PIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~R----El--~RgGQvfYv~NrV~~Ie~~~~~L~~ 825 (1139)
T COG1197 752 PIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILR----EL--LRGGQVFYVHNRVESIEKKAERLRE 825 (1139)
T ss_pred CCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHH----HH--hcCCEEEEEecchhhHHHHHHHHHH
Confidence 977776654433 3444443 467888888776543322222222 22 3478988889999999999999999
Q ss_pred hhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCcccc
Q 012322 236 KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (466)
Q Consensus 236 ~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~ 315 (466)
.. +...+..-||.|+.++-++++..|-+|+.+|||||.+.|.|||||+++.+|-- +.
T Consensus 826 LV--------PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe--------~A------- 882 (1139)
T COG1197 826 LV--------PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIE--------RA------- 882 (1139)
T ss_pred hC--------CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEe--------cc-------
Confidence 85 67889999999999999999999999999999999999999999999876631 11
Q ss_pred ceeeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 316 DVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 316 ~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
...-.++..|-.||+||. ..++||.+|++..
T Consensus 883 --D~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 883 --DKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred --ccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 112455788999999999 7899999998654
No 97
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=2.5e-25 Score=224.18 Aligned_cols=326 Identities=15% Similarity=0.192 Sum_probs=215.1
Q ss_pred CchHhHHHHH--HHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHH---HhCCccCC
Q 012322 5 PILQYEETIV--ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ---ELGVRLGE 79 (466)
Q Consensus 5 pi~~~q~~i~--~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~---~~~~~~~~ 79 (466)
..|.+|.+-+ ..+.++++++..+||+.|||.....++.......+..++.+.|....+.+....+.. ..|..+..
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~ 302 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEE 302 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchh
Confidence 3567777654 357799999999999999997666666555444456677777776666665555433 23333332
Q ss_pred eeeeeEeeccc-cCccceEEEcCHHH---HHHHHhhCCCCCCCcEEEecCCCccccCHH---HHHHHHHHHHHh-hhcCc
Q 012322 80 EVGYAIRFEDR-TSERTLIKYLTDGV---LLREILSNPDLSPYSVIILDEAHERSLNTD---ILLGLVKRLVNL-RASKL 151 (466)
Q Consensus 80 ~~g~~~~~~~~-~~~~~~i~~~T~g~---l~~~~~~~~~l~~~~~iIiDEah~~~~~~~---~~~~~l~~i~~~-~~~~~ 151 (466)
..| ++... ......+.++|.++ +.+.++....+..++.||+||.|. ..+.+ .+..++.+++-. .....
T Consensus 303 y~g---~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhm-i~d~~rg~~lE~~l~k~~y~~~~~~~ 378 (1008)
T KOG0950|consen 303 YAG---RFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHM-IGDKGRGAILELLLAKILYENLETSV 378 (1008)
T ss_pred hcc---cCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeee-eeccccchHHHHHHHHHHHhccccce
Confidence 222 22211 22456788899875 555566666888999999999995 22222 234444444433 33346
Q ss_pred eEEEEecccC-hhHHHhhcCCCCeEeeCCCcCceeeeecCCCCCc-h-HHHHHHHHHH---Hh--------------hcC
Q 012322 152 KILITSATLD-GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTS-Y-LESALKTAID---IH--------------VRE 211 (466)
Q Consensus 152 ~ii~~SAT~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~---~~--------------~~~ 211 (466)
++|+||||++ ...+++|++ +.++....++.+...........- . ....+..+-. .. ..-
T Consensus 379 ~iIGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~ 457 (1008)
T KOG0950|consen 379 QIIGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETA 457 (1008)
T ss_pred eEeeeecccCChHHHHHHhh-hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhh
Confidence 7999999995 467888885 444444444444433221111000 0 0111111110 00 011
Q ss_pred -CCCCEEEecCCHHHHHHHHHHHHHhhhhccC----------------------------CCCCCeEEEeecCCCCHHHH
Q 012322 212 -PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE----------------------------GSCMDAVILPLHGSLPPEMQ 262 (466)
Q Consensus 212 -~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~----------------------------~~~~~~~v~~~h~~l~~~~r 262 (466)
++.++|||||++..|+.++..+......... .....+++++||+|++.++|
T Consensus 458 ~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER 537 (1008)
T KOG0950|consen 458 PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEER 537 (1008)
T ss_pred hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchH
Confidence 2346999999999999999877654432110 02246689999999999999
Q ss_pred hcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC---CCCe
Q 012322 263 VRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGK 339 (466)
Q Consensus 263 ~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~---~~G~ 339 (466)
+.++..|+.|.+.|++||++++.|+|.|..+++|..-+ ......+..+|.||+|||||. .-|.
T Consensus 538 ~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~--------------~g~~~l~~~~YkQM~GRAGR~gidT~Gd 603 (1008)
T KOG0950|consen 538 EIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY--------------VGREFLTRLEYKQMVGRAGRTGIDTLGD 603 (1008)
T ss_pred HHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc--------------cccchhhhhhHHhhhhhhhhcccccCcc
Confidence 99999999999999999999999999999999996432 233456888999999999998 4689
Q ss_pred EEEecCccch
Q 012322 340 CYRLYPSTVY 349 (466)
Q Consensus 340 ~~~l~~~~~~ 349 (466)
++.++.+.+.
T Consensus 604 siLI~k~~e~ 613 (1008)
T KOG0950|consen 604 SILIIKSSEK 613 (1008)
T ss_pred eEEEeeccch
Confidence 9999977764
No 98
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.93 E-value=1.2e-24 Score=220.42 Aligned_cols=109 Identities=20% Similarity=0.176 Sum_probs=96.5
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccC
Q 012322 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (466)
Q Consensus 211 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip 290 (466)
..+.++||||+|++.++.++..|.+. ++....+||+ ..+|...+..|..+...|+||||+++||+||+
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~----------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~ 470 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKER----------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIK 470 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHc----------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCC
Confidence 34669999999999999999999986 7778889998 77888888899999999999999999999999
Q ss_pred C-------eEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 291 G-------VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 291 ~-------v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
. ..+||++.+|. |...+.||.||+||. .||.+..+.+.++.
T Consensus 471 l~~V~~~GGl~VI~t~~p~------------------s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 471 LEEVKELGGLYVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred ccchhhcCCcEEEecCCCC------------------cHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 8 45999988766 677999999999999 79999888877754
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=4.9e-24 Score=229.53 Aligned_cols=307 Identities=19% Similarity=0.246 Sum_probs=189.9
Q ss_pred CCchHhHHHHHHHHh----c-CCEEEEEcCCCCcHH-HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCcc
Q 012322 4 LPILQYEETIVETVE----Q-NPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRL 77 (466)
Q Consensus 4 lpi~~~q~~i~~~i~----~-~~~~ii~apTGsGKT-t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~ 77 (466)
+..+.||.+.++.+. + .+..+++++|||||| |.+..+..........++++++|+..|+.|..+.+.... ...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~-~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTK-IEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcc-ccc
Confidence 456789998876664 3 356899999999999 444433333333345689999999999999998775532 111
Q ss_pred CC----eeeeeEeeccccCccceEEEcCHHHHHHHHhhC------CCCCCCcEEEecCCCccccCHH-------H-----
Q 012322 78 GE----EVGYAIRFEDRTSERTLIKYLTDGVLLREILSN------PDLSPYSVIILDEAHERSLNTD-------I----- 135 (466)
Q Consensus 78 ~~----~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~------~~l~~~~~iIiDEah~~~~~~~-------~----- 135 (466)
.. ..+.....+.......+|+++|.+.+.+.+... ..+..+++||+|||| |+...+ .
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 11 111000011112345789999999887765321 356789999999999 664211 0
Q ss_pred --HHHHHHHHHHhhhcCceEEEEecccChhHHHhhcCCCCeEee-------CCCcC----ceee---------eecCC--
Q 012322 136 --LLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNV-------PGKLY----PVEI---------LHSKE-- 191 (466)
Q Consensus 136 --~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~---------~~~~~-- 191 (466)
....++.++... +...|++|||+... ..++|+. ++... .|-.. |..+ .+...
T Consensus 570 ~~~~~~yr~iL~yF--dA~~IGLTATP~r~-t~~~FG~-pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~ 645 (1123)
T PRK11448 570 LDYVSKYRRVLDYF--DAVKIGLTATPALH-TTEIFGE-PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEE 645 (1123)
T ss_pred hhHHHHHHHHHhhc--CccEEEEecCCccc-hhHHhCC-eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccch
Confidence 122345555543 46789999998532 3345543 11110 01000 1000 00000
Q ss_pred ---------------CC--CchH--------------HHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhc
Q 012322 192 ---------------RP--TSYL--------------ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (466)
Q Consensus 192 ---------------~~--~~~~--------------~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~ 240 (466)
.. .++. ...+..+........++++||||.++++|+.+++.|.+.+...
T Consensus 646 ~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~ 725 (1123)
T PRK11448 646 VEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKK 725 (1123)
T ss_pred hhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 00 0000 0111222222222335799999999999999999998765432
Q ss_pred cCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcc-eEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceee
Q 012322 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR-RFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQ 319 (466)
Q Consensus 241 ~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~-~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~ 319 (466)
.... ....+..+||+.+ ++.++++.|+++.. +|+|+++++.+|+|+|.|.+||....+
T Consensus 726 ~~~~-~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpv------------------ 784 (1123)
T PRK11448 726 YGQV-EDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRV------------------ 784 (1123)
T ss_pred cCCc-CccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCC------------------
Confidence 1110 1234556888875 46678999998876 799999999999999999999974433
Q ss_pred ecHHHHHHhccccCCCCC
Q 012322 320 ISKVQANQRVGRAGRTRP 337 (466)
Q Consensus 320 ~s~~~~~Qr~GRaGR~~~ 337 (466)
-|...|+||+||+.|..+
T Consensus 785 kS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 785 RSRILYEQMLGRATRLCP 802 (1123)
T ss_pred CCHHHHHHHHhhhccCCc
Confidence 388899999999999866
No 100
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=5.5e-23 Score=215.84 Aligned_cols=311 Identities=19% Similarity=0.140 Sum_probs=183.1
Q ss_pred CchHhHHHHHHHHhc---CC-EEEEEcCCCCcHHHHHHHHHHhcCc---CCCcEEEEeCchhHHHHHHHHHHHHHhCCcc
Q 012322 5 PILQYEETIVETVEQ---NP-VVVVIGETGSGKSTQLSQILHRHGY---TKSGIIGVTQPRRVAAVSVARRVAQELGVRL 77 (466)
Q Consensus 5 pi~~~q~~i~~~i~~---~~-~~ii~apTGsGKTt~~~~~~~~~~~---~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~ 77 (466)
+.++.|+.+++.+.. .. .+++.||||+|||+....+...... ....+++++.|.+.+..++++++.+..+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 345667777666553 34 7889999999999544433333222 2466999999999999999999876554322
Q ss_pred CCe---eeeeEe----ecc------------ccCccceEEEcCHHHHHHHHhhCCCC-----CCCcEEEecCCCccccCH
Q 012322 78 GEE---VGYAIR----FED------------RTSERTLIKYLTDGVLLREILSNPDL-----SPYSVIILDEAHERSLNT 133 (466)
Q Consensus 78 ~~~---~g~~~~----~~~------------~~~~~~~i~~~T~g~l~~~~~~~~~l-----~~~~~iIiDEah~~~~~~ 133 (466)
... .+.... ... ....-..+.++|+-............ -..+++|+||+|...-+.
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 111 111100 000 00011222234443333311111111 134799999999533332
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEecccChhH---HHhhcCCCCeEeeCCCcCc--eeeeecCCCCCchHHHH--HHHHHH
Q 012322 134 DILLGLVKRLVNLRASKLKILITSATLDGEK---VSKFFSNCPTLNVPGKLYP--VEILHSKERPTSYLESA--LKTAID 206 (466)
Q Consensus 134 ~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~ 206 (466)
....++..+......+.++|+||||+|+.. +.+.+.....+.......+ .+.........+..... ......
T Consensus 355 -~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 433 (733)
T COG1203 355 -MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELI 433 (733)
T ss_pred -hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcc
Confidence 333322333223334889999999998743 4444443322222211000 00000000011111110 011111
Q ss_pred HhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCC----CCCcceEEEEecc
Q 012322 207 IHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP----PPNCRRFIVSTNI 282 (466)
Q Consensus 207 ~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f----~~g~~~ilvaT~~ 282 (466)
......+++++|-|||+..|.++++.|+.. +..+..+||.+...+|.+.++.+ +.+...|+|||++
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~----------~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQV 503 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEK----------GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQV 503 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhc----------CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeE
Confidence 122345679999999999999999999987 22799999999999998887643 4567899999999
Q ss_pred cccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC---CCeEEEecCcc
Q 012322 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPST 347 (466)
Q Consensus 283 ~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 347 (466)
.|.|+|+. .+++| +.+.+..+.+||+||++|.+ +|..|..-...
T Consensus 504 IEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 504 IEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred EEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 99999998 66666 34567789999999999995 56666554333
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.90 E-value=5.9e-22 Score=209.03 Aligned_cols=313 Identities=15% Similarity=0.162 Sum_probs=193.9
Q ss_pred CCchHhHHHHHHHHhcC--CEEEEEcCCCCcHHHHHHHHHHhcCcC-CCcEEEEeCchhHHHHHHHHHHHHHhCCccCCe
Q 012322 4 LPILQYEETIVETVEQN--PVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~--~~~ii~apTGsGKTt~~~~~~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 80 (466)
.-+++||-.+...+... ..+++.-+.|-|||..+..++...... ...++++++|. .+..|+...+.+.++......
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~ 229 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLF 229 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEE
Confidence 34678888887766433 356778899999997666666544322 23589999996 778899888887777543211
Q ss_pred eeeeEe---ec-cccCccceEEEcCHHHHHHH--HhhCCCCCCCcEEEecCCCccccC----HHHHHHHHHHHHHhhhcC
Q 012322 81 VGYAIR---FE-DRTSERTLIKYLTDGVLLRE--ILSNPDLSPYSVIILDEAHERSLN----TDILLGLVKRLVNLRASK 150 (466)
Q Consensus 81 ~g~~~~---~~-~~~~~~~~i~~~T~g~l~~~--~~~~~~l~~~~~iIiDEah~~~~~----~~~~~~~l~~i~~~~~~~ 150 (466)
-+.... .+ ...-...+++++|.+.+.+. ......-..++++|+||||. .-. .......++.+.. ..
T Consensus 230 ~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~-lk~~~~~~s~~y~~v~~La~---~~ 305 (956)
T PRK04914 230 DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH-LVWSEEAPSREYQVVEQLAE---VI 305 (956)
T ss_pred cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh-hccCCCCcCHHHHHHHHHhh---cc
Confidence 110000 00 01112467899999877641 11122234789999999994 221 1112222333322 23
Q ss_pred ceEEEEecccChhHHH------hhc-----C------------------------CCCe---------------------
Q 012322 151 LKILITSATLDGEKVS------KFF-----S------------------------NCPT--------------------- 174 (466)
Q Consensus 151 ~~ii~~SAT~~~~~~~------~~~-----~------------------------~~~~--------------------- 174 (466)
..++++|||+-..... +++ . +.+.
T Consensus 306 ~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~ 385 (956)
T PRK04914 306 PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLL 385 (956)
T ss_pred CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHH
Confidence 4689999998421111 010 0 0000
Q ss_pred -----------------------------Eee-CCC----cCceeeeec--CCCCCchHH--------------------
Q 012322 175 -----------------------------LNV-PGK----LYPVEILHS--KERPTSYLE-------------------- 198 (466)
Q Consensus 175 -----------------------------~~~-~~~----~~~~~~~~~--~~~~~~~~~-------------------- 198 (466)
+.+ +.+ .+|...... -.....|..
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~ 465 (956)
T PRK04914 386 QAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIY 465 (956)
T ss_pred hhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHH
Confidence 000 000 000000000 000011110
Q ss_pred -------------HHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcc
Q 012322 199 -------------SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRV 265 (466)
Q Consensus 199 -------------~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~ 265 (466)
.+++.+..+.......++||||+++..+..+++.|+.. .++.+..+||+|+..+|.++
T Consensus 466 ~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~---------~Gi~~~~ihG~~s~~eR~~~ 536 (956)
T PRK04914 466 QEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER---------EGIRAAVFHEGMSIIERDRA 536 (956)
T ss_pred HHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc---------cCeeEEEEECCCCHHHHHHH
Confidence 11223344444445679999999999999999999654 38889999999999999999
Q ss_pred cCCCCCC--cceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCC--eE
Q 012322 266 FSPPPPN--CRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPG--KC 340 (466)
Q Consensus 266 ~~~f~~g--~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G--~~ 340 (466)
++.|+++ ..+|+|||+++++|+|++.+++||++++|. +...|.||+||+||. +.| .+
T Consensus 537 ~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~------------------nP~~~eQRIGR~~RiGQ~~~V~i 598 (956)
T PRK04914 537 AAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPF------------------NPDLLEQRIGRLDRIGQKHDIQI 598 (956)
T ss_pred HHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCC------------------CHHHHHHHhcccccCCCCceEEE
Confidence 9999874 699999999999999999999999988865 566899999999998 333 34
Q ss_pred EEecCccc
Q 012322 341 YRLYPSTV 348 (466)
Q Consensus 341 ~~l~~~~~ 348 (466)
|.++.+..
T Consensus 599 ~~~~~~~t 606 (956)
T PRK04914 599 HVPYLEGT 606 (956)
T ss_pred EEccCCCC
Confidence 55555443
No 102
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=5.6e-23 Score=177.47 Aligned_cols=277 Identities=18% Similarity=0.203 Sum_probs=180.5
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcCcCCCc-EEEEeCchhHHHHHHHHHHH---HHhC-CccC
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSG-IIGVTQPRRVAAVSVARRVA---QELG-VRLG 78 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~~~~~~-~i~~~~p~~~l~~~~~~~~~---~~~~-~~~~ 78 (466)
|-.-+++.|.+++. |-+++.+|.+|-||| .++..-+....+..|. .+++.+.+|+++-|+.+.+. +.+. .++.
T Consensus 65 psevqhecipqail-gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkva 143 (387)
T KOG0329|consen 65 PSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 143 (387)
T ss_pred chHhhhhhhhHHhh-cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEE
Confidence 44445555666655 566678999999999 4444455555554444 77889999999999877654 3332 2333
Q ss_pred Ceeee-eEeecc-ccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccC-HHHHHHHHHHHHHhhhcCceEE
Q 012322 79 EEVGY-AIRFED-RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKIL 154 (466)
Q Consensus 79 ~~~g~-~~~~~~-~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~-~~~~~~~l~~i~~~~~~~~~ii 154 (466)
...|. .+..+. ....-++|++.|||+++.+..+.. .+.++.++|+||++ ..+. .|.... +..+.+..|...|++
T Consensus 144 VFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcd-kmle~lDMrRD-vQEifr~tp~~KQvm 221 (387)
T KOG0329|consen 144 VFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECD-KMLEQLDMRRD-VQEIFRMTPHEKQVM 221 (387)
T ss_pred EEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHH-HHHHHHHHHHH-HHHHhhcCcccceee
Confidence 33331 111111 112357999999999999887766 79999999999999 3443 333444 677888888899999
Q ss_pred EEecccChhH---HHhhcCCCCeEeeCCCc----CceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHH
Q 012322 155 ITSATLDGEK---VSKFFSNCPTLNVPGKL----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (466)
Q Consensus 155 ~~SAT~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~ 227 (466)
.+|||++.+. ..+|+.++-.+.+.... +....+|.+-.. +.....+ .+.+..-+-++++||+.+.....
T Consensus 222 mfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke-~eKNrkl---~dLLd~LeFNQVvIFvKsv~Rl~ 297 (387)
T KOG0329|consen 222 MFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKE-NEKNRKL---NDLLDVLEFNQVVIFVKSVQRLS 297 (387)
T ss_pred eeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhh-hhhhhhh---hhhhhhhhhcceeEeeehhhhhh
Confidence 9999997653 44666554444333211 111222221111 1111122 22222233468899987765300
Q ss_pred HHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeec
Q 012322 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (466)
Q Consensus 228 ~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~ 307 (466)
| ..+ +|||+++++|+||..++.|+||++|.
T Consensus 298 -----------------------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~----- 327 (387)
T KOG0329|consen 298 -----------------------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPE----- 327 (387)
T ss_pred -----------------------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCC-----
Confidence 1 113 89999999999999999999999876
Q ss_pred CCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
+..+|.||.|||||. ..|.++.+.+.+.-..
T Consensus 328 -------------~~DtYlHrv~rAgrfGtkglaitfvs~e~da~ 359 (387)
T KOG0329|consen 328 -------------DSDTYLHRVARAGRFGTKGLAITFVSDENDAK 359 (387)
T ss_pred -------------CchHHHHHhhhhhccccccceeehhcchhhHH
Confidence 455899999999999 6899999887765544
No 103
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=2.2e-21 Score=195.00 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=112.2
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc-CcCCCcEEEEeCchhHHHHHHHHHHHHHhCCc-cC--C
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-LG--E 79 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~-~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~-~~--~ 79 (466)
+--.++|.+.+..+..++..+|+|||.+|||++-.-.+... .......++++.|+++++.|+...+...+... +. .
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 34467899999999999999999999999995443333322 22345688999999999999988876655321 11 1
Q ss_pred -eeeeeEeeccccCccceEEEcCHHHHHHHHhhC----CCCCCCcEEEecCCCcccc-CHHHHHHHHHHHHHhhhcCceE
Q 012322 80 -EVGYAIRFEDRTSERTLIKYLTDGVLLREILSN----PDLSPYSVIILDEAHERSL-NTDILLGLVKRLVNLRASKLKI 153 (466)
Q Consensus 80 -~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~----~~l~~~~~iIiDEah~~~~-~~~~~~~~l~~i~~~~~~~~~i 153 (466)
..|...+.-....-+++|.++-|+.+...+.+. .+..+++++|+||+|+.+- +.+... ..++... .+++
T Consensus 590 sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~---Eqll~li--~CP~ 664 (1330)
T KOG0949|consen 590 SLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLW---EQLLLLI--PCPF 664 (1330)
T ss_pred hhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHH---HHHHHhc--CCCe
Confidence 112111112222457999999999999988774 3889999999999997332 222222 2222222 6889
Q ss_pred EEEeccc-ChhHHHhhcC
Q 012322 154 LITSATL-DGEKVSKFFS 170 (466)
Q Consensus 154 i~~SAT~-~~~~~~~~~~ 170 (466)
+++|||+ |++.+..|+.
T Consensus 665 L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 665 LVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred eEEecccCCHHHHHHHHH
Confidence 9999999 6677888874
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=2.5e-20 Score=190.93 Aligned_cols=109 Identities=20% Similarity=0.198 Sum_probs=96.7
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEeccccccccc-
Q 012322 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV- 289 (466)
Q Consensus 211 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi- 289 (466)
..+.++||||+|++.++.++..|.+. ++....+||++...++..+.+++++|. |+||||+|+||.||
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~----------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~ 505 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEA----------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIK 505 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHC----------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCC
Confidence 35679999999999999999999987 777888999999999999999998886 99999999999999
Q ss_pred --CCeE-----EEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 290 --DGVV-----YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 290 --p~v~-----~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
++|. +||++.+|. |...+.||.||+||. .||.+..+.+-++-
T Consensus 506 l~~~V~~~GGLhVI~te~pe------------------s~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 506 LGPGVKELGGLAVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred CCcchhhhCCcEEEeeecCC------------------cHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 4899 999987765 777899999999999 79999888877743
No 105
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.4e-19 Score=186.38 Aligned_cols=123 Identities=17% Similarity=0.157 Sum_probs=88.3
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCC
Q 012322 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (466)
Q Consensus 212 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~ 291 (466)
.+.++||||+|++.++.++..|.+. ++....+||++...++..+.++|++| .|+||||+|+||+||-=
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~----------gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~L 510 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKE----------NIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVL 510 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHc----------CCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceec
Confidence 4569999999999999999999987 88889999999999999999999999 49999999999999851
Q ss_pred ---eEE-EEeCCcccc-----------------eeecCCCCccccce-eeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 292 ---VVY-VIDCGYVKQ-----------------RQYNPSSGMYSLDV-VQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 292 ---v~~-VI~~g~~~~-----------------~~~~~~~~~~~~~~-~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
..+ +.+. +.. ...-...|.+...+ ...|.--=.|-.|||||. .||.+-.+.|-++
T Consensus 511 ggn~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 511 GGSLAADLANL--PADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred CCchhhhhhcc--ccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 000 0000 000 00001233343333 234544455999999999 6898766665544
No 106
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.84 E-value=2.4e-20 Score=172.53 Aligned_cols=271 Identities=21% Similarity=0.245 Sum_probs=175.4
Q ss_pred CCcEEEEeCchhHHHHHHHHHHHHHhCC------ccCCeee-eeEee-ccccCccceEEEcCHHHHHHHHhhCC-CCCCC
Q 012322 48 KSGIIGVTQPRRVAAVSVARRVAQELGV------RLGEEVG-YAIRF-EDRTSERTLIKYLTDGVLLREILSNP-DLSPY 118 (466)
Q Consensus 48 ~~~~i~~~~p~~~l~~~~~~~~~~~~~~------~~~~~~g-~~~~~-~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~ 118 (466)
+....+++.|.+++++|....+.+..-. +....+| ...+. .......++|++.|||++...+.... .+.++
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 3457888999999999998876443211 1112222 11111 12234578999999999998876655 78889
Q ss_pred cEEEecCCCcccc---CHHHHHHHHHHHHHhhh--cCceEEEEecccChhH---HH-hhcCCCCeEeeCCC-cCceeeee
Q 012322 119 SVIILDEAHERSL---NTDILLGLVKRLVNLRA--SKLKILITSATLDGEK---VS-KFFSNCPTLNVPGK-LYPVEILH 188 (466)
Q Consensus 119 ~~iIiDEah~~~~---~~~~~~~~l~~i~~~~~--~~~~ii~~SAT~~~~~---~~-~~~~~~~~~~~~~~-~~~~~~~~ 188 (466)
.++++||++. .+ +.+++..+-..+-.... .+.+.+++|||+..-. +. +.+.-+.-+...+. ..|-.+++
T Consensus 365 rFlvlDead~-lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 365 RFLVLDEADL-LLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred EEEEecchhh-hhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 9999999984 22 33343333333322222 3678999999985422 22 11110111111110 00000000
Q ss_pred -------------------------------cCC-CCCchHHHHHHHH-----HHHhhcCCCCCEEEecCCHHHHHHHHH
Q 012322 189 -------------------------------SKE-RPTSYLESALKTA-----IDIHVREPEGDVLIFMTGQDDIEKLVS 231 (466)
Q Consensus 189 -------------------------------~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~lVF~~t~~~~~~l~~ 231 (466)
.+. ...+........+ +....+..-.+.+|||.|+.+|..+.+
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 000 0000111111111 111122334689999999999999999
Q ss_pred HHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCC
Q 012322 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (466)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~ 311 (466)
.+.+.-. ..+.+.++||+..+.+|++.++.|+++..+.++|||++++|+||.++.++|+.-+|.
T Consensus 524 ~~~qkgg-------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd--------- 587 (725)
T KOG0349|consen 524 MMNQKGG-------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPD--------- 587 (725)
T ss_pred HHHHcCC-------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCc---------
Confidence 9988732 368899999999999999999999999999999999999999999999999977766
Q ss_pred ccccceeeecHHHHHHhccccCCC-CCCeEEEec
Q 012322 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLY 344 (466)
Q Consensus 312 ~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~ 344 (466)
.+.+|+||+||+||. +-|.++.|.
T Consensus 588 ---------~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 588 ---------DKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred ---------ccchhhhhhhccchhhhcceeEEEe
Confidence 445999999999999 789888776
No 107
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=3.5e-19 Score=183.27 Aligned_cols=126 Identities=15% Similarity=0.094 Sum_probs=88.8
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccC
Q 012322 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (466)
Q Consensus 211 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip 290 (466)
..+.++||||+|++.++.+++.|.+. ++....+||. ..+|...+.+|..+...|+||||+|+||+||+
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~----------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKA----------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHC----------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 34569999999999999999999886 7888889996 77888889999999999999999999999997
Q ss_pred Ce---EEEEeCCcc----------------cceeecCCCCccccce-eeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 291 GV---VYVIDCGYV----------------KQRQYNPSSGMYSLDV-VQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 291 ~v---~~VI~~g~~----------------~~~~~~~~~~~~~~~~-~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
== .+.....+. .....-...|.+...+ .+.|.--=.|-.||+||. .||.+-.+.+-++
T Consensus 496 LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 496 LGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred CCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 21 000000000 0000001223443333 244555556999999999 6898777666554
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.82 E-value=1.3e-18 Score=179.13 Aligned_cols=115 Identities=18% Similarity=0.128 Sum_probs=100.0
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccC
Q 012322 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (466)
Q Consensus 211 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip 290 (466)
..+.++||||+|++.++.+++.|.+. ++.+..+||+++..+|.++++.|++|++.|+|||+.+++|+|+|
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~----------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL----------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh----------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 34568999999999999999999886 78899999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccc
Q 012322 291 GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTV 348 (466)
Q Consensus 291 ~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~ 348 (466)
++++||.++-- ....|-+..+|+||+|||||..+|.++.+++..+
T Consensus 510 ~v~lVvi~Dad-------------ifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~ 554 (655)
T TIGR00631 510 EVSLVAILDAD-------------KEGFLRSERSLIQTIGRAARNVNGKVIMYADKIT 554 (655)
T ss_pred CCcEEEEeCcc-------------cccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCC
Confidence 99999986511 1112337779999999999999999998887643
No 109
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.78 E-value=1e-17 Score=171.00 Aligned_cols=312 Identities=19% Similarity=0.212 Sum_probs=199.2
Q ss_pred CCchHhHHHHHHHHhcC----CEEEEEcCCCCcHH-HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccC
Q 012322 4 LPILQYEETIVETVEQN----PVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~----~~~ii~apTGsGKT-t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 78 (466)
+.+...|+.+.+.+.+. ...++.|.|||||| .++..+..... .|+.++++.|-..+..|..+++...++.+++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~--~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA--QGKQVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH--cCCEEEEEeccccchHHHHHHHHHHhCCChh
Confidence 45677788888887666 67899999999999 44444444333 4678999999999999999999999997776
Q ss_pred CeeeeeEe---e---ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHH-----HHHHHHHHHHhh
Q 012322 79 EEVGYAIR---F---EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLR 147 (466)
Q Consensus 79 ~~~g~~~~---~---~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~-----~~~~l~~i~~~~ 147 (466)
...+.-.. . .....+..+|++.|--.+. .-+.++++|||||=|..++..+- ..+ +..+....
T Consensus 275 vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd-vA~~Ra~~ 347 (730)
T COG1198 275 VLHSGLSPGERYRVWRRARRGEARVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARD-VAVLRAKK 347 (730)
T ss_pred hhcccCChHHHHHHHHHHhcCCceEEEEechhhc------CchhhccEEEEeccccccccCCcCCCcCHHH-HHHHHHHH
Confidence 65542211 1 1123467888888753221 14789999999999974443332 122 22222222
Q ss_pred hcCceEEEEecccChhHHHhhcCC-CCeEeeCCCcC-----ceeeeecCCCCCc----hHHHHHHHHHHHhhcCCCCCEE
Q 012322 148 ASKLKILITSATLDGEKVSKFFSN-CPTLNVPGKLY-----PVEILHSKERPTS----YLESALKTAIDIHVREPEGDVL 217 (466)
Q Consensus 148 ~~~~~ii~~SAT~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l 217 (466)
.+.++|+-|||+.-+.+.....+ ...+....|.. .+.+........+ +....++.+...+ +.+.++|
T Consensus 348 -~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l--~~geQ~l 424 (730)
T COG1198 348 -ENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL--ERGEQVL 424 (730)
T ss_pred -hCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH--hcCCeEE
Confidence 48999999999987766555433 23333333322 2223322221111 2233344433333 2345788
Q ss_pred EecCCHH------------------------------------------------------------HHHHHHHHHHHhh
Q 012322 218 IFMTGQD------------------------------------------------------------DIEKLVSKLEDKI 237 (466)
Q Consensus 218 VF~~t~~------------------------------------------------------------~~~~l~~~L~~~~ 237 (466)
+|+|.|. .++++.+.|.+.+
T Consensus 425 lflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F 504 (730)
T COG1198 425 LFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF 504 (730)
T ss_pred EEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC
Confidence 8888766 4555555555554
Q ss_pred hhccCCCCCCeEEEeecCCCCHHH--HhcccCCCCCCcceEEEEecccccccccCCeEEEE--eCCcccceeecCCCCcc
Q 012322 238 RSLDEGSCMDAVILPLHGSLPPEM--QVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVI--DCGYVKQRQYNPSSGMY 313 (466)
Q Consensus 238 ~~~~~~~~~~~~v~~~h~~l~~~~--r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI--~~g~~~~~~~~~~~~~~ 313 (466)
++..+..+-++.+... -+..+..|.+|+.+|||-|++++.|.|+|+++.|. |.|. .-+..
T Consensus 505 --------P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~--------~L~~~ 568 (730)
T COG1198 505 --------PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADT--------GLGSP 568 (730)
T ss_pred --------CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechh--------hhcCC
Confidence 4666777777665433 34667889999999999999999999999999874 3221 11222
Q ss_pred ccceeeecHHHHHHhccccCCC-CCCeEEEe
Q 012322 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRL 343 (466)
Q Consensus 314 ~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l 343 (466)
++.-.--....+.|-+|||||. .+|..+.-
T Consensus 569 DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQ 599 (730)
T COG1198 569 DFRASERTFQLLMQVAGRAGRAGKPGEVVIQ 599 (730)
T ss_pred CcchHHHHHHHHHHHHhhhccCCCCCeEEEE
Confidence 2322233455678999999999 88887653
No 110
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.78 E-value=1.4e-17 Score=166.97 Aligned_cols=294 Identities=16% Similarity=0.175 Sum_probs=174.8
Q ss_pred chHhHHHH----HHHHhcCCE-EEEEcCCCCcHH-HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCC
Q 012322 6 ILQYEETI----VETVEQNPV-VVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (466)
Q Consensus 6 i~~~q~~i----~~~i~~~~~-~ii~apTGsGKT-t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 79 (466)
...+|... .+++.+|+. .++++.||+||| |.+..+-........++++++..++++..|....+...+......
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~ 245 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKM 245 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccce
Confidence 34566544 455666654 788999999999 444433333344445799999999999999988776655432111
Q ss_pred eeeeeEeeccccCccceEEEcCHHHHHHHHhhC-C-----CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceE
Q 012322 80 EVGYAIRFEDRTSERTLIKYLTDGVLLREILSN-P-----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (466)
Q Consensus 80 ~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~-~-----~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~i 153 (466)
....+......++|.++|...+....... . ....+++||||||| |+...... .++.... ...
T Consensus 246 ----n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-----~I~dYFd--A~~ 313 (875)
T COG4096 246 ----NKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-----SILDYFD--AAT 313 (875)
T ss_pred ----eeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-----HHHHHHH--HHH
Confidence 11112222335799999999888877544 1 34558999999999 77655542 3333332 223
Q ss_pred EEEecccChh---HHHhhcCCCCeEe------------eCCCcCceeeeec-------CC-------------CCCc---
Q 012322 154 LITSATLDGE---KVSKFFSNCPTLN------------VPGKLYPVEILHS-------KE-------------RPTS--- 195 (466)
Q Consensus 154 i~~SAT~~~~---~~~~~~~~~~~~~------------~~~~~~~~~~~~~-------~~-------------~~~~--- 195 (466)
+++|||+... .--.||++.|+.. ++.+.+.+...+. .. ....
T Consensus 314 ~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~ 393 (875)
T COG4096 314 QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEA 393 (875)
T ss_pred HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccc
Confidence 4449998542 1234563322211 1111111111100 00 0000
Q ss_pred ----------hHHHHHHHHHH-Hhhc----CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHH
Q 012322 196 ----------YLESALKTAID-IHVR----EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPE 260 (466)
Q Consensus 196 ----------~~~~~~~~~~~-~~~~----~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~ 260 (466)
.....+...+. .... ...+++||||.+..+|+.+...+.+.+.+.+ +--+....+.-...
T Consensus 394 ~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~-----~~~a~~IT~d~~~~ 468 (875)
T COG4096 394 RDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN-----GRYAMKITGDAEQA 468 (875)
T ss_pred cccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc-----CceEEEEeccchhh
Confidence 01112222222 2222 1146999999999999999999999876532 23344455554333
Q ss_pred HHhcccCCC--CCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC
Q 012322 261 MQVRVFSPP--PPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR 336 (466)
Q Consensus 261 ~r~~~~~~f--~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~ 336 (466)
++ .++.| ++.-.+|.++.+.+.+|||+|.|..+|-.-. --|+.-|+||.||+-|.+
T Consensus 469 q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~------------------VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 469 QA--LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRK------------------VRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred HH--HHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhh------------------hhhHHHHHHHhcCccccC
Confidence 22 22222 3445689999999999999999988774222 238999999999999974
No 111
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.77 E-value=5.9e-18 Score=161.63 Aligned_cols=278 Identities=22% Similarity=0.261 Sum_probs=179.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceEEE
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ 99 (466)
.+++.-+|||.||||+-+.+-+.. ...-++.-|.|.+|.++++++ ...|+.+....|...++.......++.+-
T Consensus 191 RkIi~H~GPTNSGKTy~ALqrl~~-----aksGvycGPLrLLA~EV~~r~-na~gipCdL~TGeE~~~~~~~~~~a~hvS 264 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQRLKS-----AKSGVYCGPLRLLAHEVYDRL-NALGIPCDLLTGEERRFVLDNGNPAQHVS 264 (700)
T ss_pred heEEEEeCCCCCchhHHHHHHHhh-----hccceecchHHHHHHHHHHHh-hhcCCCccccccceeeecCCCCCcccceE
Confidence 456777999999999665544442 234567779999999999997 55678887777866655444333455555
Q ss_pred cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc---CCCCeEe
Q 012322 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF---SNCPTLN 176 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~---~~~~~~~ 176 (466)
+|-++.- .-..+++.||||++ ..-|.....++-+.++......+.+-+=-|-+ +.+.+.+ ++...+.
T Consensus 265 cTVEM~s-------v~~~yeVAViDEIQ-mm~Dp~RGwAWTrALLGl~AdEiHLCGepsvl--dlV~~i~k~TGd~vev~ 334 (700)
T KOG0953|consen 265 CTVEMVS-------VNTPYEVAVIDEIQ-MMRDPSRGWAWTRALLGLAADEIHLCGEPSVL--DLVRKILKMTGDDVEVR 334 (700)
T ss_pred EEEEEee-------cCCceEEEEehhHH-hhcCcccchHHHHHHHhhhhhhhhccCCchHH--HHHHHHHhhcCCeeEEE
Confidence 5654321 33568999999998 45555555555555555444333332211111 1122222 2222221
Q ss_pred eCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCC
Q 012322 177 VPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS 256 (466)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~ 256 (466)
.-.|..|+.+ .+ ..+.-...-.+|.++|= =|++++..+...+.+. .+..++.++|+
T Consensus 335 ~YeRl~pL~v----------~~----~~~~sl~nlk~GDCvV~-FSkk~I~~~k~kIE~~---------g~~k~aVIYGs 390 (700)
T KOG0953|consen 335 EYERLSPLVV----------EE----TALGSLSNLKPGDCVVA-FSKKDIFTVKKKIEKA---------GNHKCAVIYGS 390 (700)
T ss_pred eecccCccee----------hh----hhhhhhccCCCCCeEEE-eehhhHHHHHHHHHHh---------cCcceEEEecC
Confidence 1112222111 11 11222223345665543 3788999999999887 35668999999
Q ss_pred CCHHHHhcccCCCCC--CcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCC
Q 012322 257 LPPEMQVRVFSPPPP--NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR 334 (466)
Q Consensus 257 l~~~~r~~~~~~f~~--g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR 334 (466)
|||+.|..--..|.+ +..+|+||||+.+||+|+. |+-||-+.+.| |+ .-...+++.++..|-+|||||
T Consensus 391 LPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGR 460 (700)
T KOG0953|consen 391 LPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGR 460 (700)
T ss_pred CCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeeccc---CC------cccceeccHHHHHHHhhcccc
Confidence 999999877777765 8999999999999999998 88888766655 22 233467889999999999999
Q ss_pred C----CCCeEEEecCcc
Q 012322 335 T----RPGKCYRLYPST 347 (466)
Q Consensus 335 ~----~~G~~~~l~~~~ 347 (466)
. ..|.+-.+..++
T Consensus 461 f~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 461 FGSKYPQGEVTTLHSED 477 (700)
T ss_pred cccCCcCceEEEeeHhh
Confidence 8 357777776554
No 112
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.77 E-value=1.9e-17 Score=172.50 Aligned_cols=287 Identities=13% Similarity=0.058 Sum_probs=160.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh-cCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEee-ccccCccceEE
Q 012322 21 PVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-EDRTSERTLIK 98 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~-~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~i~ 98 (466)
+..+|+.+||||||..+..++.. ....+..+++++.|+..|..|..+.+.......+ ...+..... .........|+
T Consensus 264 ~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~-~~~~s~~~L~~~l~~~~~~ii 342 (667)
T TIGR00348 264 RGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCA-ERIESIAELKRLLEKDDGGII 342 (667)
T ss_pred ceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCC-cccCCHHHHHHHHhCCCCCEE
Confidence 56889999999999333333322 2223456899999999999999998866542111 111100000 00112346899
Q ss_pred EcCHHHHHHHHhh---CCCCCCC-cEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChh---HHHhhcC-
Q 012322 99 YLTDGVLLREILS---NPDLSPY-SVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE---KVSKFFS- 170 (466)
Q Consensus 99 ~~T~g~l~~~~~~---~~~l~~~-~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~---~~~~~~~- 170 (466)
++|.+.+.+.... ....... .+||+|||| |+....+. +.+....+ +...+++|||+-.. .-...|+
T Consensus 343 vtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~----~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~ 416 (667)
T TIGR00348 343 ITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA----KNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAY 416 (667)
T ss_pred EEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH----HHHHhhCC-CCcEEEEeCCCcccccccccccccC
Confidence 9999988764322 1111111 289999999 76655432 22223444 78899999999321 1112222
Q ss_pred --CCCeEe--eC---CCcCceeeeecCCCC------------------------Cch---------------------HH
Q 012322 171 --NCPTLN--VP---GKLYPVEILHSKERP------------------------TSY---------------------LE 198 (466)
Q Consensus 171 --~~~~~~--~~---~~~~~~~~~~~~~~~------------------------~~~---------------------~~ 198 (466)
+..+.. +. ...+.+.+.|..... .+. ..
T Consensus 417 ~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 496 (667)
T TIGR00348 417 VFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLE 496 (667)
T ss_pred CCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHH
Confidence 111111 00 011112222221100 000 01
Q ss_pred HHHHHHHHHhh---cCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHH---------------
Q 012322 199 SALKTAIDIHV---REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPE--------------- 260 (466)
Q Consensus 199 ~~~~~~~~~~~---~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~--------------- 260 (466)
.....++..+. ....++.+|||.++..|..+++.|.+...... +.....++++.+.+
T Consensus 497 ~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~-----~~~~vv~s~~~~~~~~~~~~~~~~~~~~~ 571 (667)
T TIGR00348 497 SIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF-----EASAIVMTGKESDDAEIRDYNKHIRTKFD 571 (667)
T ss_pred HHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc-----CCeeEEecCCccchhHHHHHHHHhccccc
Confidence 11111221111 12247999999999999999999877643210 12233444433222
Q ss_pred ------HHhcccCCCCC-CcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccC
Q 012322 261 ------MQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (466)
Q Consensus 261 ------~r~~~~~~f~~-g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaG 333 (466)
....+.+.|++ +..+|+|.++.+.+|+|.|.+.+++- + .|.....++|.+||+-
T Consensus 572 ~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyl-d------------------Kplk~h~LlQai~R~n 632 (667)
T TIGR00348 572 KSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYL-D------------------KPLKYHGLLQAIARTN 632 (667)
T ss_pred cchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEE-e------------------ccccccHHHHHHHHhc
Confidence 12356677765 68899999999999999999987763 0 1223346789999999
Q ss_pred CC-CCC
Q 012322 334 RT-RPG 338 (466)
Q Consensus 334 R~-~~G 338 (466)
|. .+|
T Consensus 633 R~~~~~ 638 (667)
T TIGR00348 633 RIDGKD 638 (667)
T ss_pred cccCCC
Confidence 94 444
No 113
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=2.3e-17 Score=169.60 Aligned_cols=135 Identities=18% Similarity=0.120 Sum_probs=91.1
Q ss_pred HHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEE
Q 012322 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS 279 (466)
Q Consensus 200 ~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilva 279 (466)
.++.+...+ ..+.++||||+|++.++.++..|... ++....+||+++..++..+.++|++|. |+||
T Consensus 438 ii~ei~~~~--~~GrpVLV~t~sv~~se~ls~~L~~~----------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIA 503 (908)
T PRK13107 438 IIKDIKDCR--ERGQPVLVGTVSIEQSELLARLMVKE----------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIA 503 (908)
T ss_pred HHHHHHHHH--HcCCCEEEEeCcHHHHHHHHHHHHHC----------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEe
Confidence 334444443 33569999999999999999999886 778888999999999999999999997 9999
Q ss_pred ecccccccccCCeE----EEE-eCCccc--------------ceeecCCCCccccce-eeecHHHHHHhccccCCC-CCC
Q 012322 280 TNIAETSLTVDGVV----YVI-DCGYVK--------------QRQYNPSSGMYSLDV-VQISKVQANQRVGRAGRT-RPG 338 (466)
Q Consensus 280 T~~~~~Gidip~v~----~VI-~~g~~~--------------~~~~~~~~~~~~~~~-~~~s~~~~~Qr~GRaGR~-~~G 338 (466)
||+|+||.||. .. +-+ ...-+. ....-...|.+...+ ...|.--=.|-.|||||. .||
T Consensus 504 TnmAGRGTDIk-Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPG 582 (908)
T PRK13107 504 TNMAGRGTDIV-LGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAG 582 (908)
T ss_pred cCCcCCCccee-cCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCC
Confidence 99999999985 11 000 000000 000001122332222 233444445999999999 689
Q ss_pred eEEEecCccch
Q 012322 339 KCYRLYPSTVY 349 (466)
Q Consensus 339 ~~~~l~~~~~~ 349 (466)
.+-.+.+-++.
T Consensus 583 ss~f~lSlED~ 593 (908)
T PRK13107 583 SSRFYLSMEDS 593 (908)
T ss_pred ceeEEEEeCcH
Confidence 87776665543
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.75 E-value=6.9e-17 Score=164.59 Aligned_cols=271 Identities=17% Similarity=0.138 Sum_probs=177.8
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCc--cCCeee
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR--LGEEVG 82 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~--~~~~~g 82 (466)
+.|+.|.-=...+..|+...|+||||.||||+...+...... .|.+++++.||..++.|.++++.+..... ....+.
T Consensus 82 ~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~ 160 (1187)
T COG1110 82 RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK-KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV 160 (1187)
T ss_pred CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh-cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 678888887788999999999999999999887766665544 45799999999999999999986543211 111111
Q ss_pred eeEee---------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCc---cccCHHHHHHH-----------
Q 012322 83 YAIRF---------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHE---RSLNTDILLGL----------- 139 (466)
Q Consensus 83 ~~~~~---------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~---~~~~~~~~~~~----------- 139 (466)
|.... +...+.+.+|+++|.+.+.+.+..-.. -++++|++|.+|. .+-+.|..+.+
T Consensus 161 yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a 239 (1187)
T COG1110 161 YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESA 239 (1187)
T ss_pred eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHH
Confidence 21111 112245789999999988776643322 4799999999885 11112211111
Q ss_pred -----HH-------------HHHH--------hhhcCceEEEEecccChh-----HHHhhcCCCCeEeeCCCc---Ccee
Q 012322 140 -----VK-------------RLVN--------LRASKLKILITSATLDGE-----KVSKFFSNCPTLNVPGKL---YPVE 185 (466)
Q Consensus 140 -----l~-------------~i~~--------~~~~~~~ii~~SAT~~~~-----~~~~~~~~~~~~~~~~~~---~~~~ 185 (466)
++ +..+ .+.+...+|+.|||..+. .+.+.++ +.+.+.. .++.
T Consensus 240 ~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----FevG~~~~~LRNIv 315 (1187)
T COG1110 240 YELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEVGSGGEGLRNIV 315 (1187)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----CccCccchhhhhee
Confidence 00 0100 011246789999999553 2444443 1122111 1111
Q ss_pred eeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCC---HHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHH
Q 012322 186 ILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTG---QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQ 262 (466)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t---~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r 262 (466)
-.|... +-. ..+..+...- +...|||++. ++.+++++++|++. ++++..+|++ .
T Consensus 316 D~y~~~---~~~----e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~----------Gi~a~~~~a~-----~ 372 (1187)
T COG1110 316 DIYVES---ESL----EKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSH----------GINAELIHAE-----K 372 (1187)
T ss_pred eeeccC---ccH----HHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhc----------CceEEEeecc-----c
Confidence 112211 222 2222222222 3368999999 99999999999987 8999999983 2
Q ss_pred hcccCCCCCCcceEEEEec----ccccccccCC-eEEEEeCCcccce
Q 012322 263 VRVFSPPPPNCRRFIVSTN----IAETSLTVDG-VVYVIDCGYVKQR 304 (466)
Q Consensus 263 ~~~~~~f~~g~~~ilvaT~----~~~~Gidip~-v~~VI~~g~~~~~ 304 (466)
.+.++.|..|+++++|... ++-+|+|+|. ++|+|-+|.|+..
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 6778999999999998764 7899999997 6999999999654
No 115
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.74 E-value=1.6e-17 Score=144.53 Aligned_cols=156 Identities=22% Similarity=0.200 Sum_probs=106.0
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHh-cCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEe
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIR 86 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~-~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~ 86 (466)
++|.++++.+.+|+++++.||||+|||+.+...+.. .......+++++.|++.++.|+.+.+.+.+.............
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGG 81 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTT
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccccccc
Confidence 579999999999999999999999999555433332 2222345999999999999999999877766521111111000
Q ss_pred e--c----cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh--cCceEEEEe
Q 012322 87 F--E----DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA--SKLKILITS 157 (466)
Q Consensus 87 ~--~----~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~--~~~~ii~~S 157 (466)
. . .....+.+|+++||+.+.+.+.... .+.++++||+||+|+...+ .+ ...+..+..... .+.+++++|
T Consensus 82 ~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~-~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 82 QSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TF-RAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp SCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-TH-HHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cH-HHHHHHHHHHhcCCCCCcEEEEe
Confidence 0 0 1112468999999999998887632 5566999999999952221 22 223444444432 268999999
Q ss_pred cccChhHHH
Q 012322 158 ATLDGEKVS 166 (466)
Q Consensus 158 AT~~~~~~~ 166 (466)
||++ ..++
T Consensus 160 AT~~-~~~~ 167 (169)
T PF00270_consen 160 ATLP-SNVE 167 (169)
T ss_dssp SSST-HHHH
T ss_pred eCCC-hhHh
Confidence 9998 5444
No 116
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.73 E-value=7.2e-16 Score=147.18 Aligned_cols=168 Identities=19% Similarity=0.136 Sum_probs=120.4
Q ss_pred CceEEEEecccChhHHHhhcCCCCeEee--CCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHH
Q 012322 150 KLKILITSATLDGEKVSKFFSNCPTLNV--PGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (466)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~ 227 (466)
..|+|.+|||+.+..+..--++ .+-++ +.......+.. .+...-++..+..+.... ..+.++||-+=|++.++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~-vveQiIRPTGLlDP~iev--Rp~~~QvdDL~~EI~~r~--~~~eRvLVTtLTKkmAE 460 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGN-VVEQIIRPTGLLDPEIEV--RPTKGQVDDLLSEIRKRV--AKNERVLVTTLTKKMAE 460 (663)
T ss_pred cCCEEEEECCCChHHHHhccCc-eeEEeecCCCCCCCceee--ecCCCcHHHHHHHHHHHH--hcCCeEEEEeehHHHHH
Confidence 5689999999976544432211 11111 11111111221 233334444555444433 23479999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeec
Q 012322 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (466)
Q Consensus 228 ~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~ 307 (466)
.+.++|.+. ++++.++|+++..-+|.++++..+.|..+|||--|.+-.|+|+|.|..|.-.+--|
T Consensus 461 dLT~Yl~e~----------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADK----- 525 (663)
T COG0556 461 DLTEYLKEL----------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADK----- 525 (663)
T ss_pred HHHHHHHhc----------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCc-----
Confidence 999999987 99999999999999999999999999999999999999999999999886432211
Q ss_pred CCCCccccceeeecHHHHHHhccccCCCCCCeEEEecC
Q 012322 308 PSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYP 345 (466)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~ 345 (466)
.|+ .-|-.+.+|-+|||.|.-.|+++....
T Consensus 526 --eGF------LRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 526 --EGF------LRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred --ccc------ccccchHHHHHHHHhhccCCeEEEEch
Confidence 122 125558889999999999999987653
No 117
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.73 E-value=9.7e-17 Score=143.99 Aligned_cols=156 Identities=21% Similarity=0.198 Sum_probs=107.9
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcCc---CCCcEEEEeCchhHHHHHHHHHHHHHhCC---ccC
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGY---TKSGIIGVTQPRRVAAVSVARRVAQELGV---RLG 78 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~~---~~~~~i~~~~p~~~l~~~~~~~~~~~~~~---~~~ 78 (466)
.+.+|.++++.+.+|+++++++|||+|||.. +..++..... ..+.+++++.|++.++.|+.+.+.+.... .+.
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~ 101 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVV 101 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEE
Confidence 6889999999999999999999999999933 3333333322 24668999999999999998887655432 211
Q ss_pred CeeeeeEeec--cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 79 EEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 79 ~~~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
...|...... .....+.+|+++|++.+.+.+.... .+.+++++|+||+|. ..+.++. ..+..+....+.+.++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~-~~~~~~~-~~~~~~~~~l~~~~~~~~ 179 (203)
T cd00268 102 VIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR-MLDMGFE-DQIREILKLLPKDRQTLL 179 (203)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH-hhccChH-HHHHHHHHhCCcccEEEE
Confidence 1111110000 1112367899999999988876554 678899999999994 3333333 334555555555899999
Q ss_pred EecccChh
Q 012322 156 TSATLDGE 163 (466)
Q Consensus 156 ~SAT~~~~ 163 (466)
+|||++..
T Consensus 180 ~SAT~~~~ 187 (203)
T cd00268 180 FSATMPKE 187 (203)
T ss_pred EeccCCHH
Confidence 99999853
No 118
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=4e-17 Score=156.09 Aligned_cols=319 Identities=10% Similarity=0.010 Sum_probs=197.4
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHH-hcCcCCCcEEEEeCchhHHHHHHHHHHH------HHhCCccC
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILH-RHGYTKSGIIGVTQPRRVAAVSVARRVA------QELGVRLG 78 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~-~~~~~~~~~i~~~~p~~~l~~~~~~~~~------~~~~~~~~ 78 (466)
-+++|.+++..+.+|++.++.-.|.|||++.-..... ..........++..|++++++...+... +.+...+.
T Consensus 287 ~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V 366 (1034)
T KOG4150|consen 287 GIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYV 366 (1034)
T ss_pred hhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhccee
Confidence 4678999999999999999999999999943221111 1111223456667777777766543210 11111000
Q ss_pred Ce-eeeeEeec-cccCccceEEEcCHHHHHHHHhhCC-----CCCCCcEEEecCCCccccCH-HHHHHHHHHHHHhhh--
Q 012322 79 EE-VGYAIRFE-DRTSERTLIKYLTDGVLLREILSNP-----DLSPYSVIILDEAHERSLNT-DILLGLVKRLVNLRA-- 148 (466)
Q Consensus 79 ~~-~g~~~~~~-~~~~~~~~i~~~T~g~l~~~~~~~~-----~l~~~~~iIiDEah~~~~~~-~~~~~~l~~i~~~~~-- 148 (466)
.+ -|.....+ .-...+.+.++..+.+.....+... .+-...+.++||.|....-. ......++++....+
T Consensus 367 ~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F 446 (1034)
T KOG4150|consen 367 EMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGF 446 (1034)
T ss_pred ecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHH
Confidence 00 01000000 0112457788888877665554332 23345688999999633222 223334555544432
Q ss_pred ---cCceEEEEecccC-hh-HHHhhcC--CCCeEeeCCCcCceee--eecCCC-------CCchHHHHHHHHHHHhhcCC
Q 012322 149 ---SKLKILITSATLD-GE-KVSKFFS--NCPTLNVPGKLYPVEI--LHSKER-------PTSYLESALKTAIDIHVREP 212 (466)
Q Consensus 149 ---~~~~ii~~SAT~~-~~-~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 212 (466)
.+.+++-.|||.. +. ...+.++ ....+...|.+..-+. .|.+.. ..+++.+..+.+.+.. ..
T Consensus 447 ~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i--~~ 524 (1034)
T KOG4150|consen 447 EASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMV--QH 524 (1034)
T ss_pred HhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHH--Hc
Confidence 4789999999983 32 3445554 2345566665433322 232211 1122222222222222 23
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCe
Q 012322 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGV 292 (466)
Q Consensus 213 ~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v 292 (466)
+-++|.||++|+-|+.+....++.+-+.... .--.+..|.||...++|++++...-.|+..-|+|||++|.||||.+.
T Consensus 525 ~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~--LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~L 602 (1034)
T KOG4150|consen 525 GLRCIAFCPSRKLCELVLCLTREILAETAPH--LVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHL 602 (1034)
T ss_pred CCcEEEeccHHHHHHHHHHHHHHHHHHhhHH--HHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccc
Confidence 4589999999999998877666654332210 12235568999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCc
Q 012322 293 VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPS 346 (466)
Q Consensus 293 ~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~ 346 (466)
+.|++.|+|. |.++++|..|||||. .+..++.+...
T Consensus 603 DAVl~~GFP~------------------S~aNl~QQ~GRAGRRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 603 DAVLHLGFPG------------------SIANLWQQAGRAGRRNKPSLAVYVAFL 639 (1034)
T ss_pred eeEEEccCch------------------hHHHHHHHhccccccCCCceEEEEEec
Confidence 9999999976 888999999999998 66665544433
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.68 E-value=2.5e-16 Score=163.57 Aligned_cols=112 Identities=20% Similarity=0.145 Sum_probs=99.6
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCC
Q 012322 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (466)
Q Consensus 212 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~ 291 (466)
.+.+++|||+|++.++.+++.|.+. ++.+..+||+++..+|..+++.|++|+..|+|||+++++|+|+|+
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~----------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~ 514 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL----------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPE 514 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc----------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccC
Confidence 4568999999999999999999876 888999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCc
Q 012322 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPS 346 (466)
Q Consensus 292 v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~ 346 (466)
+++||.++.+. ...|.+..+|+||+||+||...|.|+.+++.
T Consensus 515 v~lVii~d~ei-------------fG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 515 VSLVAILDADK-------------EGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred CcEEEEeCCcc-------------cccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 99999866432 1123477799999999999999999999874
No 120
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=6e-15 Score=152.28 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=83.8
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHH---hCCccCCee
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQE---LGVRLGEEV 81 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~---~~~~~~~~~ 81 (466)
+.++|.+++..+..++.++..++||+||| +++.+++..... +..+.++.|++.|+.|.++.+.+. ++.+++...
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~ 170 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLV 170 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 78899999999999999999999999999 443333333321 224677789999999988876543 444544444
Q ss_pred eeeEeeccccCccceEEEcCHHHH-HHHHhhCC-CC-------CCCcEEEecCCCc
Q 012322 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSNP-DL-------SPYSVIILDEAHE 128 (466)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l-~~~~~~~~-~l-------~~~~~iIiDEah~ 128 (466)
|..........-.++|+|+|||.+ ..++.... .+ ..+.++||||||.
T Consensus 171 GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 171 SGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred CCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 322111112223589999999999 77776553 22 3457999999885
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.66 E-value=3.9e-14 Score=152.37 Aligned_cols=138 Identities=13% Similarity=0.160 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcc
Q 012322 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR 274 (466)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~ 274 (466)
++.......+..+... .+|++|||++|.+..+.+++.|...... .+..+ +..+.. ..|.++++.|++|+.
T Consensus 657 ~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~------~~~~~--l~q~~~-~~r~~ll~~F~~~~~ 726 (850)
T TIGR01407 657 EYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEF------EGYEV--LAQGIN-GSRAKIKKRFNNGEK 726 (850)
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccc------cCceE--EecCCC-ccHHHHHHHHHhCCC
Confidence 3444455555554433 4589999999999999999999763211 13333 222332 468888999999999
Q ss_pred eEEEEecccccccccCCeE--EEEeCCcccceeecC-------------CCCccccceeeecHHHHHHhccccCCCC--C
Q 012322 275 RFIVSTNIAETSLTVDGVV--YVIDCGYVKQRQYNP-------------SSGMYSLDVVQISKVQANQRVGRAGRTR--P 337 (466)
Q Consensus 275 ~ilvaT~~~~~Gidip~v~--~VI~~g~~~~~~~~~-------------~~~~~~~~~~~~s~~~~~Qr~GRaGR~~--~ 337 (466)
.|+++|+.+.+|||+|+.. .||-.++|-.+--|| ...++.+ .-|.....+.|-+||.=|.. .
T Consensus 727 ~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~-~lP~A~~~l~Qa~GRlIRs~~D~ 805 (850)
T TIGR01407 727 AILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDY-VLPMAIIRLRQALGRLIRRENDR 805 (850)
T ss_pred eEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHh-hHHHHHHHHHHhhccccccCCce
Confidence 9999999999999999864 677789885432111 1112211 11334556789999999983 4
Q ss_pred CeEEEe
Q 012322 338 GKCYRL 343 (466)
Q Consensus 338 G~~~~l 343 (466)
|..+.+
T Consensus 806 G~v~il 811 (850)
T TIGR01407 806 GSIVIL 811 (850)
T ss_pred EEEEEE
Confidence 655544
No 122
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.62 E-value=1.5e-15 Score=125.90 Aligned_cols=103 Identities=25% Similarity=0.340 Sum_probs=92.4
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCC
Q 012322 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (466)
Q Consensus 212 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~ 291 (466)
.++++||||+++..++.+++.|.+. ...+..+||+++.++|..+++.|.+|..+|+++|+++++|+|+|+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~ 96 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP----------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPN 96 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc----------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhh
Confidence 4679999999999999999999873 677899999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC-CCeEEE
Q 012322 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-PGKCYR 342 (466)
Q Consensus 292 v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 342 (466)
+++||..+. +.+...+.|++||+||.+ .|.|+.
T Consensus 97 ~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 97 VSVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred CCEEEEeCC------------------CCCHHHheecccccccCCCCceEEe
Confidence 999997664 337779999999999994 777765
No 123
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.62 E-value=5.6e-14 Score=149.64 Aligned_cols=112 Identities=16% Similarity=0.080 Sum_probs=90.2
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCC---cceEEEEecccccccc
Q 012322 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN---CRRFIVSTNIAETSLT 288 (466)
Q Consensus 212 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g---~~~ilvaT~~~~~Gid 288 (466)
.+.++|||+........+.++|... ++....+||+++.++|..+++.|... ...+|++|.+++.|||
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~----------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR----------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc----------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 4569999999888888777777654 77888899999999999999999642 3467899999999999
Q ss_pred cCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC---CCeEEEecCccchhh
Q 012322 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD 351 (466)
Q Consensus 289 ip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~ 351 (466)
+...++||.++.+ -+.....|+.||+-|-+ +=.+|+|+++...+.
T Consensus 556 Lt~Ad~VIiyD~d------------------WNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 556 LATADIVILYDSD------------------WNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred hhhCCEEEEeCCC------------------CChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 9999999986643 25556779999998873 346888888876644
No 124
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.60 E-value=1.8e-15 Score=118.73 Aligned_cols=67 Identities=43% Similarity=0.796 Sum_probs=54.7
Q ss_pred HHHHHHHHcccccCCCCCCHHHHHHccCCCCHHHHHHHHHhhhhCCHHHHHHHhhhhcCCCcccCCC
Q 012322 399 DALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGR 465 (466)
Q Consensus 399 ~~l~~L~~~~~l~~~~~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~f~~~~ 465 (466)
+|++.|+.+|+||++|++|++|+.++++|++|++|++|++|..++|++++++|+|+++++++|..|.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~ 67 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPD 67 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---C
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCcc
Confidence 4789999999999999999999999999999999999999999999999999999999999999864
No 125
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.60 E-value=4.9e-16 Score=116.26 Aligned_cols=71 Identities=21% Similarity=0.264 Sum_probs=67.1
Q ss_pred CeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHH
Q 012322 247 DAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQAN 326 (466)
Q Consensus 247 ~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~ 326 (466)
++.+..+||+++.++|..+++.|.++..+||+||+++++|+|+|++++||+++.|. +..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~------------------~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPW------------------SPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSES------------------SHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCC------------------CHHHHH
Confidence 88899999999999999999999999999999999999999999999999987644 788999
Q ss_pred HhccccCCC
Q 012322 327 QRVGRAGRT 335 (466)
Q Consensus 327 Qr~GRaGR~ 335 (466)
|++||+||.
T Consensus 69 Q~~GR~~R~ 77 (78)
T PF00271_consen 69 QRIGRAGRI 77 (78)
T ss_dssp HHHTTSSTT
T ss_pred HHhhcCCCC
Confidence 999999996
No 126
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.58 E-value=6.8e-13 Score=138.33 Aligned_cols=97 Identities=19% Similarity=0.114 Sum_probs=73.2
Q ss_pred EEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCC--------------------------
Q 012322 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP-------------------------- 269 (466)
Q Consensus 216 ~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f-------------------------- 269 (466)
.||=+++++.+..+++.|-....... ..+.+..|||..+...|..+++..
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~----~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~ 834 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEK----YQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSP 834 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccC----CceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhccc
Confidence 37888899999999998877644322 356788899999888877665331
Q ss_pred CCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCC
Q 012322 270 PPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP 337 (466)
Q Consensus 270 ~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~ 337 (466)
..+...|+|||++.|.|+|++ .+++|- .+.+..+.+||+||+.|.+.
T Consensus 835 ~~~~~~i~v~Tqv~E~g~D~d-fd~~~~--------------------~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 835 ALNHLFIVLATPVEEVGRDHD-YDWAIA--------------------DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred ccCCCeEEEEeeeEEEEeccc-CCeeee--------------------ccCcHHHHHHHhhccccccc
Confidence 124678999999999999997 444442 35578899999999999843
No 127
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=2.3e-14 Score=135.59 Aligned_cols=301 Identities=15% Similarity=0.144 Sum_probs=185.7
Q ss_pred CchHhHHHHHHHHhcCC---EEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCee
Q 012322 5 PILQYEETIVETVEQNP---VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~---~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~ 81 (466)
-+.+||+.-+...-.+. .-+|+.|-|+|||..-.-.+. +-.+.+++++-....+.|+..++..+..+......
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~----tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~ 377 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC----TIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQIC 377 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee----eecccEEEEecCccCHHHHHHHHHhhcccCccceE
Confidence 36789999888876543 568899999999933221111 12346777777778889998888777776665555
Q ss_pred eeeEeeccccCccceEEEcCHHHHHHHH---------hhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCce
Q 012322 82 GYAIRFEDRTSERTLIKYLTDGVLLREI---------LSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (466)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~~---------~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (466)
.+......+...++.+++.|..++...- +....-+..+++++||+| .+....+..++..+....
T Consensus 378 rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVH--vvPA~MFRRVlsiv~aHc----- 450 (776)
T KOG1123|consen 378 RFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVH--VVPAKMFRRVLSIVQAHC----- 450 (776)
T ss_pred EeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhc--cchHHHHHHHHHHHHHHh-----
Confidence 5444444445667889998876653211 111124568999999999 455555555555554333
Q ss_pred EEEEecccCh--hHHH--hhcCCCCeEeeC-------CCcCceee--eecCCC--------------------CCchHHH
Q 012322 153 ILITSATLDG--EKVS--KFFSNCPTLNVP-------GKLYPVEI--LHSKER--------------------PTSYLES 199 (466)
Q Consensus 153 ii~~SAT~~~--~~~~--~~~~~~~~~~~~-------~~~~~~~~--~~~~~~--------------------~~~~~~~ 199 (466)
-+++|||+-. +.+. +|+-++..++.+ |....+.. .|-+-. .+.....
T Consensus 451 KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFr 530 (776)
T KOG1123|consen 451 KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFR 530 (776)
T ss_pred hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhH
Confidence 3889999832 2232 222222221111 00001110 000000 0011223
Q ss_pred HHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCC-CcceEEE
Q 012322 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIV 278 (466)
Q Consensus 200 ~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~-g~~~ilv 278 (466)
.+..+++.|.. .+.++|||..+.-...+.+-.|.+- +++|..++.+|.++++.|+- .+++-|+
T Consensus 531 aCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~Kp---------------fIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 531 ACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGKP---------------FIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCCc---------------eEECCCchhHHHHHHHhcccCCccceEE
Confidence 44556666655 4568999988766555554444332 48999999999999999984 4678888
Q ss_pred EecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCC-------CeEEEecCccch
Q 012322 279 STNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP-------GKCYRLYPSTVY 349 (466)
Q Consensus 279 aT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~-------G~~~~l~~~~~~ 349 (466)
-.-+...+||+|..++.|+.. +.. -|..+=.||.||.-|.+. ...|.|++++..
T Consensus 595 lSKVgDtSiDLPEAnvLIQIS--------SH~---------GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQIS--------SHG---------GSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred EeeccCccccCCcccEEEEEc--------ccc---------cchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 899999999999999999721 111 144566699999888732 346667766544
No 128
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.57 E-value=1.3e-13 Score=142.92 Aligned_cols=319 Identities=17% Similarity=0.168 Sum_probs=208.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeee---eeEeeccccCcc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG---YAIRFEDRTSER 94 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~ 94 (466)
+.++++++.+|+|||||..+..++.. +....+++++.|..+.+..+++.+.+.++...|..+- .....+.+....
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~ 1234 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQK 1234 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhh
Confidence 45789999999999999887766664 4456689999999988888888777666544444332 122233444567
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHH-H---HHHHHHHHHHhhhcCceEEEEeccc-ChhHHHhhc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTD-I---LLGLVKRLVNLRASKLKILITSATL-DGEKVSKFF 169 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~-~---~~~~l~~i~~~~~~~~~ii~~SAT~-~~~~~~~~~ 169 (466)
.+++++||++.... . ..+++++.|.||.|+.+--.+ . +.. ++.+.....++.+++.+|-.+ +...+ -++
T Consensus 1235 ~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~-ig~ 1308 (1674)
T KOG0951|consen 1235 GQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL-IGA 1308 (1674)
T ss_pred cceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh-ccc
Confidence 89999999987655 1 678899999999996331111 1 222 555555555689999999888 44444 333
Q ss_pred CCCCeEeeC--CCcCceeeeecCCCCCchHHHHH-------HHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhh-
Q 012322 170 SNCPTLNVP--GKLYPVEILHSKERPTSYLESAL-------KTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS- 239 (466)
Q Consensus 170 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~- 239 (466)
....++.+. .|..|..++.+......+....+ ..+.. + ...+++.+||+|++++|..++..+-.....
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~-~-a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~ 1386 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR-H-AGNRKPAIVFLPTRKHARLVAVDLVTFSHAD 1386 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHH-H-hcCCCCeEEEeccchhhhhhhhccchhhccC
Confidence 334455443 35667777666554444332222 12211 1 124578999999999999988766432110
Q ss_pred -----------ccCC--CCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceee
Q 012322 240 -----------LDEG--SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (466)
Q Consensus 240 -----------~~~~--~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~ 306 (466)
+... ......|. |-+|+..++..+-..|..|.+.|+|...- -+|+-...--+|+. .+..|
T Consensus 1387 ~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvm----gt~~y 1459 (1674)
T KOG0951|consen 1387 EPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVM----GTQYY 1459 (1674)
T ss_pred cHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEe----cceee
Confidence 0000 01233343 89999999999999999999999887665 77877665445553 45667
Q ss_pred cCCCCccccceeeecHHHHHHhccccCCCCCCeEEEec--CccchhhhCCCCCCC
Q 012322 307 NPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLY--PSTVYHDEFLDVTVP 359 (466)
Q Consensus 307 ~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~--~~~~~~~~~~~~~~p 359 (466)
|.....+ ...+.+...|+.|+|.| .|+|+.+. +++.|...+...+.|
T Consensus 1460 dg~e~~~----~~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1460 DGKEHSY----EDYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred ccccccc----ccCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 7665433 23477889999999999 67787776 444444435544444
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.55 E-value=3e-12 Score=136.08 Aligned_cols=134 Identities=9% Similarity=0.088 Sum_probs=88.1
Q ss_pred chHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecC-CCCHHHHhcccCCCCCCc
Q 012322 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG-SLPPEMQVRVFSPPPPNC 273 (466)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~-~l~~~~r~~~~~~f~~g~ 273 (466)
+|.....+.+..+. ..+|++||+++|.+..+.+++.|... ...+ ...| +.+ +.++.+.|+++.
T Consensus 631 ~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~----------~~~~-l~Qg~~~~---~~~l~~~F~~~~ 694 (820)
T PRK07246 631 VYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW----------QVSH-LAQEKNGT---AYNIKKRFDRGE 694 (820)
T ss_pred HHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc----------CCcE-EEeCCCcc---HHHHHHHHHcCC
Confidence 45555555554544 45789999999999999999988643 2223 2333 222 345677888888
Q ss_pred ceEEEEecccccccccC--CeEEEEeCCcccceeecC----------CCC--ccccceeeecHHHHHHhccccCCCC--C
Q 012322 274 RRFIVSTNIAETSLTVD--GVVYVIDCGYVKQRQYNP----------SSG--MYSLDVVQISKVQANQRVGRAGRTR--P 337 (466)
Q Consensus 274 ~~ilvaT~~~~~Gidip--~v~~VI~~g~~~~~~~~~----------~~~--~~~~~~~~~s~~~~~Qr~GRaGR~~--~ 337 (466)
..||++|+.+..|||+| +...||-.++|-.+--|| ..| ...-..-|.....+.|-+||.=|.. .
T Consensus 695 ~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~ 774 (820)
T PRK07246 695 QQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQK 774 (820)
T ss_pred CeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCc
Confidence 89999999999999997 356667788885433232 111 1111122444567889999999983 5
Q ss_pred CeEEEec
Q 012322 338 GKCYRLY 344 (466)
Q Consensus 338 G~~~~l~ 344 (466)
|..+.+-
T Consensus 775 Gvv~ilD 781 (820)
T PRK07246 775 SAVLILD 781 (820)
T ss_pred EEEEEEC
Confidence 7665543
No 130
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=6.4e-14 Score=145.17 Aligned_cols=166 Identities=16% Similarity=0.121 Sum_probs=113.7
Q ss_pred eEEEEecccChh--HHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhh--cCCCCCEEEecCCHHHHH
Q 012322 152 KILITSATLDGE--KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHV--REPEGDVLIFMTGQDDIE 227 (466)
Q Consensus 152 ~ii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lVF~~t~~~~~ 227 (466)
++-+||.|...+ .|.+.+ +..++.++... |+.....+...-.........++.... ...+.++||||+|++.++
T Consensus 535 kLaGMTGTA~te~~Ef~~iY-~L~Vv~IPTnr-P~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE 612 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIY-KLDVVVIPTNK-PIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSE 612 (1025)
T ss_pred hhcccCCCChhHHHHHHHHh-CCcEEECCCCC-CcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHH
Confidence 567777777432 344444 34556666532 211111111000111222333333221 134679999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccC---CeEE-----EEeCC
Q 012322 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD---GVVY-----VIDCG 299 (466)
Q Consensus 228 ~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip---~v~~-----VI~~g 299 (466)
.++..|... ++....+|+ .+.+|...+..|..+...|+||||+|+||+||+ +|.. ||++.
T Consensus 613 ~Ls~~L~~~----------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgte 680 (1025)
T PRK12900 613 TLSRMLRAK----------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSE 680 (1025)
T ss_pred HHHHHHHHc----------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCC
Confidence 999999887 777788997 577888889999999999999999999999999 4533 36554
Q ss_pred cccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 300 YVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
.+ .|...+.||.||+||. .||.+..+++.++.
T Consensus 681 rh------------------es~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 681 RH------------------ESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CC------------------chHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 43 3666899999999999 79999999988765
No 131
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.51 E-value=4.2e-13 Score=119.47 Aligned_cols=157 Identities=24% Similarity=0.194 Sum_probs=105.8
Q ss_pred CCchHhHHHHHHHHhcC-CEEEEEcCCCCcHHHHHHHHHH-hcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCee
Q 012322 4 LPILQYEETIVETVEQN-PVVVVIGETGSGKSTQLSQILH-RHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~-~~~ii~apTGsGKTt~~~~~~~-~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~ 81 (466)
-+..++|.++++.+... +.+++.||||+|||+.+..++. ........+++++.|++.++.+..+++.+..........
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVV 86 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEE
Confidence 35688999999999988 9999999999999964444444 333333468999999999999998888766543211111
Q ss_pred eeeEeec------cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEE
Q 012322 82 GYAIRFE------DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (466)
Q Consensus 82 g~~~~~~------~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (466)
....... .......+++++|++.+.+...... ...+++++|+||+|... .... ...+..+....+...+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~-~~~~-~~~~~~~~~~~~~~~~~v 164 (201)
T smart00487 87 GLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLL-DGGF-GDQLEKLLKLLPKNVQLL 164 (201)
T ss_pred EEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHh-cCCc-HHHHHHHHHhCCccceEE
Confidence 1100100 0111223899999999988886654 66788999999999522 1122 223444544444588999
Q ss_pred EEecccCh
Q 012322 155 ITSATLDG 162 (466)
Q Consensus 155 ~~SAT~~~ 162 (466)
++|||++.
T Consensus 165 ~~saT~~~ 172 (201)
T smart00487 165 LLSATPPE 172 (201)
T ss_pred EEecCCch
Confidence 99999953
No 132
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=1.6e-12 Score=131.21 Aligned_cols=107 Identities=23% Similarity=0.205 Sum_probs=75.7
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccC-
Q 012322 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD- 290 (466)
Q Consensus 212 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip- 290 (466)
.+.++||.+.|.+..+.++..|.+. ++....+++.-..++-..+-++=+. -.|.||||+|+||.||.
T Consensus 426 ~GrPVLVgt~sI~~SE~ls~~L~~~----------gI~h~vLNAk~~~~EA~IIa~AG~~--gaVTIATNMAGRGTDIkL 493 (764)
T PRK12326 426 TGQPVLVGTHDVAESEELAERLRAA----------GVPAVVLNAKNDAEEARIIAEAGKY--GAVTVSTQMAGRGTDIRL 493 (764)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhC----------CCcceeeccCchHhHHHHHHhcCCC--CcEEEEecCCCCccCeec
Confidence 4569999999999999999999886 6666668876444443333333333 37899999999999985
Q ss_pred --------------CeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 291 --------------GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 291 --------------~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
+=-+||-+.++ .|.--=.|-.||+||. .||.+-.+.+-++
T Consensus 494 g~~~~~~~~~V~~~GGLhVIgTerh------------------eSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 494 GGSDEADRDRVAELGGLHVIGTGRH------------------RSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CCCcccchHHHHHcCCcEEEeccCC------------------chHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 11245544333 3444556999999999 7898776665554
No 133
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.50 E-value=4.2e-13 Score=112.45 Aligned_cols=136 Identities=33% Similarity=0.292 Sum_probs=89.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCc-CCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeecccc------Cc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRT------SE 93 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~ 93 (466)
+++++.+|||+|||+++..++..... ....+++++.|++.++.+..+.+...... ...+.......... ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 35789999999999666655554432 24568999999999999998888766642 22222222222111 45
Q ss_pred cceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 94 RTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 94 ~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
..+++++|++.+.+.+.... .....+++|+||+|. .............. .......+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~~~~~~-~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR-LLNQGFGLLGLKIL-LKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHH-HhhcchHHHHHHHH-hhCCccceEEEEeccC
Confidence 78999999998887775443 456789999999994 22222221111122 2233478999999996
No 134
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.49 E-value=2.2e-13 Score=110.20 Aligned_cols=134 Identities=21% Similarity=0.270 Sum_probs=85.3
Q ss_pred hcCCEEEEEcCCCCcHHH-HHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeec-cccCccc
Q 012322 18 EQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE-DRTSERT 95 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt-~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~ 95 (466)
.+|+..+|...+|+|||+ .+|.++.+.. ..+.+++++.|+|..+.++.+.+... . +.+..... .......
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i-~~~~rvLvL~PTRvva~em~~aL~~~---~----~~~~t~~~~~~~~g~~ 73 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAI-KRRLRVLVLAPTRVVAEEMYEALKGL---P----VRFHTNARMRTHFGSS 73 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHH-HTT--EEEEESSHHHHHHHHHHTTTS---S----EEEESTTSS----SSS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHH-HccCeEEEecccHHHHHHHHHHHhcC---C----cccCceeeeccccCCC
Confidence 568889999999999995 5666665443 35779999999999999988876321 1 11111111 1233567
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHH--HHHHHHHHHHhhhcCceEEEEecccChh
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI--LLGLVKRLVNLRASKLKILITSATLDGE 163 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~--~~~~l~~i~~~~~~~~~ii~~SAT~~~~ 163 (466)
.|-++|.+.+.+.+.......++++||+||+|. .|... ....++..... ...++|+||||++..
T Consensus 74 ~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~--~Dp~sIA~rg~l~~~~~~--g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 74 IIDVMCHATYGHFLLNPCRLKNYDVIIMDECHF--TDPTSIAARGYLRELAES--GEAKVIFMTATPPGS 139 (148)
T ss_dssp SEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT----SHHHHHHHHHHHHHHHT--TS-EEEEEESS-TT-
T ss_pred cccccccHHHHHHhcCcccccCccEEEEecccc--CCHHHHhhheeHHHhhhc--cCeeEEEEeCCCCCC
Confidence 788899998888877766889999999999994 44443 34444444332 247899999999753
No 135
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.47 E-value=1.3e-13 Score=106.50 Aligned_cols=65 Identities=49% Similarity=0.854 Sum_probs=61.9
Q ss_pred HHHHHHHcccccCCCCCCHHHHHHccCCCCHHHHHHHHHhhhh-CCHHHHHHHhhhhcCCCcccCC
Q 012322 400 ALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEF-GCLSQALTVAAMLSAETTLLPG 464 (466)
Q Consensus 400 ~l~~L~~~~~l~~~~~~T~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~f~~~ 464 (466)
|++.|+.+|+||++|++|++|+.|+++|++|++|++++.+..+ +|.+++++|+|++++.++|..+
T Consensus 2 A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~ 67 (92)
T smart00847 2 ALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP 67 (92)
T ss_pred HHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc
Confidence 6889999999999999999999999999999999999999999 9999999999999999988654
No 136
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.45 E-value=1e-12 Score=115.77 Aligned_cols=147 Identities=14% Similarity=0.091 Sum_probs=91.9
Q ss_pred CCchHhHHHHHHHHhc-------CCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCc
Q 012322 4 LPILQYEETIVETVEQ-------NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR 76 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~-------~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~ 76 (466)
+.++.+|++++..+.+ +..+++.+|||||||..+..++..... +++++.|+..+..|....+.......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 4678999999988873 689999999999999555544443332 78888999999999988884333221
Q ss_pred cCCee--------ee--------eEeeccccCccceEEEcCHHHHHHHHhhCC------------CCCCCcEEEecCCCc
Q 012322 77 LGEEV--------GY--------AIRFEDRTSERTLIKYLTDGVLLREILSNP------------DLSPYSVIILDEAHE 128 (466)
Q Consensus 77 ~~~~~--------g~--------~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~------------~l~~~~~iIiDEah~ 128 (466)
..... +. ............++.+.|...+........ .....++||+||+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH- 156 (184)
T PF04851_consen 78 YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH- 156 (184)
T ss_dssp EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG-
T ss_pred hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh-
Confidence 11100 00 000011123467889999988877654311 34467899999999
Q ss_pred cccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 129 RSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 129 ~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
+....... +.+.. . ....+|+||||+.
T Consensus 157 ~~~~~~~~----~~i~~-~-~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSSY----REIIE-F-KAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHHH----HHHHH-S-SCCEEEEEESS-S
T ss_pred hcCCHHHH----HHHHc-C-CCCeEEEEEeCcc
Confidence 34333322 33333 3 3788999999985
No 137
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.44 E-value=1.1e-13 Score=104.42 Aligned_cols=71 Identities=31% Similarity=0.398 Sum_probs=65.7
Q ss_pred CeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHH
Q 012322 247 DAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQAN 326 (466)
Q Consensus 247 ~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~ 326 (466)
+..+..+||++++++|..+++.|.++..+|+++|+++++|+|+|+++.||.++.+ .+...+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~------------------~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLP------------------WSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCC------------------CCHHHHH
Confidence 7789999999999999999999999999999999999999999999999987653 3788999
Q ss_pred HhccccCCC
Q 012322 327 QRVGRAGRT 335 (466)
Q Consensus 327 Qr~GRaGR~ 335 (466)
|++||++|.
T Consensus 73 Q~~gR~~R~ 81 (82)
T smart00490 73 QRIGRAGRA 81 (82)
T ss_pred HhhcccccC
Confidence 999999995
No 138
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.40 E-value=9.6e-15 Score=146.50 Aligned_cols=421 Identities=8% Similarity=-0.120 Sum_probs=279.1
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCC----CcEEEEeCchhHHHHHHHHHHHHHhCCccCC
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK----SGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~----~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 79 (466)
+|+-.+.+.|++++.++.+.++-+.+||||+++.++.+...-..+ -..++..+|++..+........-..+..++.
T Consensus 405 gk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvll 484 (1282)
T KOG0921|consen 405 GKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLL 484 (1282)
T ss_pred cchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeeccchhh
Confidence 578889999999999999999999999999988887776543221 1245566666665544444333333333333
Q ss_pred eeeeeEeecccc-CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEec
Q 012322 80 EVGYAIRFEDRT-SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (466)
Q Consensus 80 ~~g~~~~~~~~~-~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (466)
..++...+.... ..+..+..++.+.++..++.+ +......+.||.|++..+++++..++..+ .++.++++
T Consensus 485 r~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~-------p~~~~~gr 555 (1282)
T KOG0921|consen 485 RMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI-------PDVTVHGR 555 (1282)
T ss_pred hhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc-------cceeeccc
Confidence 334433333222 233445567777777766544 34566788999999999999987765543 35689999
Q ss_pred ccChhHHHhhcCCCCeEeeCCCcCceeee------------------------------------ecCCCCCchHHHHHH
Q 012322 159 TLDGEKVSKFFSNCPTLNVPGKLYPVEIL------------------------------------HSKERPTSYLESALK 202 (466)
Q Consensus 159 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~ 202 (466)
|.|...+-.++-..+...++++.++.+.. ..........++.+.
T Consensus 556 t~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~ 635 (1282)
T KOG0921|consen 556 TFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLN 635 (1282)
T ss_pred cccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHh
Confidence 99976644333233333333222221100 001123444444443
Q ss_pred HHHH------HhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceE
Q 012322 203 TAID------IHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRF 276 (466)
Q Consensus 203 ~~~~------~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~i 276 (466)
.+.. +..-.++...|+|++.+.........+.+. ....+....+...|......+...+.+....+.+..
T Consensus 636 ~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y----~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniae 711 (1282)
T KOG0921|consen 636 DIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKY----EILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAE 711 (1282)
T ss_pred hhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhc----ccccchhhcccHhhhhccCcccccccccccccceee
Confidence 3322 222356778999999998877776666543 111112445677888998888889999999999999
Q ss_pred EEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchhhhCCCC
Q 012322 277 IVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDV 356 (466)
Q Consensus 277 lvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~ 356 (466)
...|...+..|...+.-+|++++--+...+.....+......|.+.-.-.||.||++|.+.+.||.+.+...+.. |..+
T Consensus 712 tsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~e-m~r~ 790 (1282)
T KOG0921|consen 712 TSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAE-MFRT 790 (1282)
T ss_pred EeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHh-hhcC
Confidence 999999999999999999999999888888777776666667777778889999999999999999999999988 9999
Q ss_pred CCCccccCCchHHHHHHHhCCCCCCccccccCCCCCCHHHHHHHHHHHHHcccccCCC--CCCHHHHHHccCCCCHHHHH
Q 012322 357 TVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENG--SITSIGRTMAELPLEPSLSR 434 (466)
Q Consensus 357 ~~p~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~L~~~~~l~~~~--~~T~lG~~~~~~~~~~~~~~ 434 (466)
..+|+.+.....-++.++.+-.........+.+.+|+.... .+..|...+.+...| .+|.+++.....++.+..++
T Consensus 791 plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~--~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~ 868 (1282)
T KOG0921|consen 791 PLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLR--EMGALDANDELTPLGRMLARLPIEPRIGKMMILGTAL 868 (1282)
T ss_pred ccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHH--HhhhhhccCcccchhhhhhhccCcccccceeeechhh
Confidence 99999887655544444433222211122344455544433 333444444444444 57889999999999998887
Q ss_pred HHHHhh
Q 012322 435 MLMEAN 440 (466)
Q Consensus 435 ~~~~~~ 440 (466)
+...+.
T Consensus 869 g~~~~m 874 (1282)
T KOG0921|consen 869 GAGSVM 874 (1282)
T ss_pred ccchhh
Confidence 655443
No 139
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.38 E-value=3.4e-10 Score=122.73 Aligned_cols=139 Identities=16% Similarity=0.228 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcc
Q 012322 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR 274 (466)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~ 274 (466)
.|.......+..+. ...+|++|||++|.+..+.+++.|...... .++.+.. . +++...|.++.+.|+.+..
T Consensus 735 ~~~~~la~~i~~l~-~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~------~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~ 805 (928)
T PRK08074 735 EYIEEVAAYIAKIA-KATKGRMLVLFTSYEMLKKTYYNLKNEEEL------EGYVLLA-Q-GVSSGSRARLTKQFQQFDK 805 (928)
T ss_pred HHHHHHHHHHHHHH-HhCCCCEEEEECCHHHHHHHHHHHhhcccc------cCceEEe-c-CCCCCCHHHHHHHHHhcCC
Confidence 34445555555543 345689999999999999999999765210 1222222 2 3434457778888988888
Q ss_pred eEEEEecccccccccCC--eEEEEeCCcccceeecC-------------CCCccccceeeecHHHHHHhccccCCCC--C
Q 012322 275 RFIVSTNIAETSLTVDG--VVYVIDCGYVKQRQYNP-------------SSGMYSLDVVQISKVQANQRVGRAGRTR--P 337 (466)
Q Consensus 275 ~ilvaT~~~~~Gidip~--v~~VI~~g~~~~~~~~~-------------~~~~~~~~~~~~s~~~~~Qr~GRaGR~~--~ 337 (466)
.||++|..+..|||+|+ ++.||-.++|-.+--|| ...++.. .-|.....+.|-+||.=|.. .
T Consensus 806 ~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~-~lP~A~~~lkQg~GRlIRs~~D~ 884 (928)
T PRK08074 806 AILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQEL-SLPQAVLRFKQGFGRLIRTETDR 884 (928)
T ss_pred eEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhh-hhHHHHHHHHhhhhhhcccCCce
Confidence 99999999999999997 58888888885321111 1122221 12344567789999999983 4
Q ss_pred CeEEEe
Q 012322 338 GKCYRL 343 (466)
Q Consensus 338 G~~~~l 343 (466)
|..+.+
T Consensus 885 G~v~il 890 (928)
T PRK08074 885 GTVFVL 890 (928)
T ss_pred EEEEEe
Confidence 655544
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=5.8e-11 Score=121.91 Aligned_cols=106 Identities=19% Similarity=0.161 Sum_probs=73.8
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCC
Q 012322 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (466)
Q Consensus 212 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~ 291 (466)
.+.|+||.+.|.+..+.++..|.+. ++....+++.-...+-..+-++=+ .-.|.||||+|+||.||.-
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~----------gi~h~vLNAk~~e~EA~IIa~AG~--~GaVTIATNMAGRGTDI~L 492 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEA----------NIPHTVLNAKQNAREAEIIAKAGQ--KGAITIATNMAGRGTDIKL 492 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC----------CCCceeecccchhhHHHHHHhCCC--CCeEEEecccccCCcCccC
Confidence 4569999999999999999999886 555556777543333333332222 3479999999999999862
Q ss_pred eE--------EEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCcc
Q 012322 292 VV--------YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (466)
Q Consensus 292 v~--------~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 347 (466)
-. +||-+..+. |.--=.|-.||+||. .||.+-.+.+-+
T Consensus 493 g~~V~~~GGLhVIgTerhe------------------SrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 493 SKEVLELGGLYVLGTDKAE------------------SRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred chhHHHcCCcEEEecccCc------------------hHHHHHHHhcccccCCCCCcceEEEecc
Confidence 22 677655433 333334999999999 688765555444
No 141
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=1.4e-11 Score=127.61 Aligned_cols=105 Identities=15% Similarity=0.110 Sum_probs=64.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHh---CCccCCeeeeeEeeccccCccceEEE
Q 012322 23 VVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGEEVGYAIRFEDRTSERTLIKY 99 (466)
Q Consensus 23 ~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~i~~ 99 (466)
-+....||+|||..+...+..... .|..+-++.|+..||.+-++.+...+ |++++...+.....+.+..-.++|+|
T Consensus 98 ~iaEM~TGEGKTLvA~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~~dI~Y 176 (913)
T PRK13103 98 KIAEMRTGEGKTLVGTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYAADITY 176 (913)
T ss_pred ccccccCCCCChHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhcCCEEE
Confidence 367899999999433322222222 35667788899999999988887655 34443332211111222233589999
Q ss_pred cCHHHH-----HHHHh---hCCCCCCCcEEEecCCCc
Q 012322 100 LTDGVL-----LREIL---SNPDLSPYSVIILDEAHE 128 (466)
Q Consensus 100 ~T~g~l-----~~~~~---~~~~l~~~~~iIiDEah~ 128 (466)
+|...+ ...+. ......++.+.||||+|.
T Consensus 177 GT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 177 GTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred EcccccccchhhccceechhhhcccccceeEechhhh
Confidence 999875 22221 111347788999999885
No 142
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.30 E-value=5.8e-10 Score=113.91 Aligned_cols=294 Identities=16% Similarity=0.125 Sum_probs=166.0
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccC-ccce
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTS-ERTL 96 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~ 96 (466)
......+|.+|.||||||.+..++......+..+++++..++.++.+.+.++.... .. ..+.|....+.... ...+
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~-l~--gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAG-LS--GFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcC-CC--cceeeeccccccccccccC
Confidence 45667899999999999888778776644457789999999999999999885421 11 11222111111111 1234
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCH---H---HHHHHHHHHHHhhhcCceEEEEecccChhH---HHh
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNT---D---ILLGLVKRLVNLRASKLKILITSATLDGEK---VSK 167 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~---~---~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~---~~~ 167 (466)
-+++.-+.+.+.. ...+.++++|||||+-. .+.. . .....+..+........++|+|-||++... ++.
T Consensus 124 rLivqIdSL~R~~--~~~l~~yDvVIIDEv~s-vL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~ 200 (824)
T PF02399_consen 124 RLIVQIDSLHRLD--GSLLDRYDVVIIDEVMS-VLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLAS 200 (824)
T ss_pred eEEEEehhhhhcc--cccccccCEEEEehHHH-HHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHH
Confidence 4555556665543 34677899999999753 1111 1 112222223333334668999999998753 233
Q ss_pred hcCCCCeEeeCCC----cCce-eeeecCC--------------------CC-------------CchHHHHHHHHHHHhh
Q 012322 168 FFSNCPTLNVPGK----LYPV-EILHSKE--------------------RP-------------TSYLESALKTAIDIHV 209 (466)
Q Consensus 168 ~~~~~~~~~~~~~----~~~~-~~~~~~~--------------------~~-------------~~~~~~~~~~~~~~~~ 209 (466)
.-++.++..+.+. .+.- ...+.+. +. .+.....+..+..-+
T Consensus 201 ~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L- 279 (824)
T PF02399_consen 201 CRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARL- 279 (824)
T ss_pred hCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHH-
Confidence 2222222111110 0000 0000000 00 000011112222211
Q ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEeccccccccc
Q 012322 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (466)
Q Consensus 210 ~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi 289 (466)
..+.++-||++|...++-+++..+.. ...|..++|.-+.+ .+ +.+ ++.+|++-|++...|+++
T Consensus 280 -~~gknIcvfsSt~~~~~~v~~~~~~~----------~~~Vl~l~s~~~~~---dv-~~W--~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 280 -NAGKNICVFSSTVSFAEIVARFCARF----------TKKVLVLNSTDKLE---DV-ESW--KKYDVVIYTPVITVGLSF 342 (824)
T ss_pred -hCCCcEEEEeChHHHHHHHHHHHHhc----------CCeEEEEcCCCCcc---cc-ccc--cceeEEEEeceEEEEecc
Confidence 23567889999999999888887765 56677788765554 22 233 368999999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCcc
Q 012322 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPST 347 (466)
Q Consensus 290 p~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~ 347 (466)
....+=-.+++.+...+- .+..+..|++||+-.-.....|..+...
T Consensus 343 ~~~HF~~~f~yvk~~~~g------------pd~~s~~Q~lgRvR~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYG------------PDMVSVYQMLGRVRSLLDNEIYVYIDAS 388 (824)
T ss_pred chhhceEEEEEecCCCCC------------CcHHHHHHHHHHHHhhccCeEEEEEecc
Confidence 765433223332211111 1344677999999544666666666444
No 143
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.30 E-value=6.5e-11 Score=122.20 Aligned_cols=135 Identities=11% Similarity=-0.001 Sum_probs=82.4
Q ss_pred EEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhC-CccCCeeeeeE---ee---ccccCccce
Q 012322 24 VVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-VRLGEEVGYAI---RF---EDRTSERTL 96 (466)
Q Consensus 24 ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~-~~~~~~~g~~~---~~---~~~~~~~~~ 96 (466)
+..+.+|||||.....++..... .|+.++++.|...++.|..+++.+.++ ..+....+... ++ .....++.+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~-~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~ 242 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR-AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR 242 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH-cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc
Confidence 33444699999444444433322 466899999999999999999998887 43332222111 01 111245577
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHH-----HHHHHHHHHHhhhcCceEEEEecccChhHHHh
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLRASKLKILITSATLDGEKVSK 167 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~-----~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~ 167 (466)
|++.|-..+. .-+.++++|||||=|..++..+. ..+ +-...... .+..+|+.|||++.+.+..
T Consensus 243 IViGtRSAvF------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRd-vA~~Ra~~-~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 243 VVVGTRSAVF------APVEDLGLVAIWDDGDDLLAEPRAPYPHARE-VALLRAHQ-HGCALLIGGHARTAEAQAL 310 (665)
T ss_pred EEEEcceeEE------eccCCCCEEEEEcCCchhhcCCCCCCccHHH-HHHHHHHH-cCCcEEEECCCCCHHHHHH
Confidence 8887753221 14789999999999964433321 122 11222222 4899999999998776543
No 144
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.29 E-value=1.2e-10 Score=120.37 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=66.7
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHH--HHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH---HHHhCCccCCeeeeeEee
Q 012322 13 IVETVEQNPVVVVIGETGSGKSTQ--LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEVGYAIRF 87 (466)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKTt~--~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~---~~~~~~~~~~~~g~~~~~ 87 (466)
++-.+.-++--+....||.|||.. +|.++... .|..+-++.+...||..-++.+ .+.+|++++...+.....
T Consensus 82 lig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL---~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~ 158 (870)
T CHL00122 82 LIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSE 158 (870)
T ss_pred hhhhHhhcCCccccccCCCCchHHHHHHHHHHHh---cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChH
Confidence 445444445567899999999933 33333222 2455556667778887766655 456677766544322222
Q ss_pred ccccCccceEEEcCHHHH-----HHHHhhC---CCCCCCcEEEecCCCc
Q 012322 88 EDRTSERTLIKYLTDGVL-----LREILSN---PDLSPYSVIILDEAHE 128 (466)
Q Consensus 88 ~~~~~~~~~i~~~T~g~l-----~~~~~~~---~~l~~~~~iIiDEah~ 128 (466)
+.+..-.++|.|+|...+ ...+... .....+.+.||||+|.
T Consensus 159 err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDS 207 (870)
T CHL00122 159 ERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDS 207 (870)
T ss_pred HHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchh
Confidence 223344689999998643 2222111 1345677888888875
No 145
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.21 E-value=2.9e-08 Score=101.49 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCC----
Q 012322 196 YLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP---- 271 (466)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~---- 271 (466)
|.......+..+. ...+|.+||-+.|....+.+++.|...+ .+.+ ...|..+ .+...++.|+.
T Consensus 454 ~~~~~~~~~~~~~-~~~~G~~lvLfTS~~~~~~~~~~l~~~l---------~~~~-l~qg~~~--~~~~l~~~f~~~~~~ 520 (636)
T TIGR03117 454 WLENVSLSTAAIL-RKAQGGTLVLTTAFSHISAIGQLVELGI---------PAEI-VIQSEKN--RLASAEQQFLALYAN 520 (636)
T ss_pred HHHHHHHHHHHHH-HHcCCCEEEEechHHHHHHHHHHHHhhc---------CCCE-EEeCCCc--cHHHHHHHHHHhhcC
Confidence 3334444444443 3456799999999999999999997763 3333 3445443 22334555554
Q ss_pred CcceEEEEeccccccccc----------CCeEEEEeCCcccceeecCC--------CCccccceeeecHHHHHHhccccC
Q 012322 272 NCRRFIVSTNIAETSLTV----------DGVVYVIDCGYVKQRQYNPS--------SGMYSLDVVQISKVQANQRVGRAG 333 (466)
Q Consensus 272 g~~~ilvaT~~~~~Gidi----------p~v~~VI~~g~~~~~~~~~~--------~~~~~~~~~~~s~~~~~Qr~GRaG 333 (466)
|...||++|+.+..|||+ +.++.||-.-+|-.+ -||- .|-.-....|.....+.|-+||-=
T Consensus 521 ~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLI 599 (636)
T TIGR03117 521 GIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLV 599 (636)
T ss_pred CCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCcee
Confidence 578999999999999999 347888877777433 2221 121111223555667789999999
Q ss_pred CC--C--CCeEEEecCc
Q 012322 334 RT--R--PGKCYRLYPS 346 (466)
Q Consensus 334 R~--~--~G~~~~l~~~ 346 (466)
|. . .|....|-++
T Consensus 600 R~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 600 RHPDMPQNRRIHMLDGR 616 (636)
T ss_pred ecCCCcCceEEEEEeCC
Confidence 98 3 5666655444
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=3.2e-09 Score=109.77 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=66.4
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH---HHHhCCccCCeeeeeEeecc
Q 012322 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEVGYAIRFED 89 (466)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 89 (466)
++-.+.=++--+....||-|||..+.+.+...... |..+-++.+...||..-++.+ .+.+|.+++...+.....+.
T Consensus 91 liGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~-GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~er 169 (939)
T PRK12902 91 LIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT-GKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEER 169 (939)
T ss_pred HHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc-CCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHH
Confidence 44443333444779999999994333333333333 344445555567776665554 46667766654332222223
Q ss_pred ccCccceEEEcCHHHH-----HHHHhhC---CCCCCCcEEEecCCCc
Q 012322 90 RTSERTLIKYLTDGVL-----LREILSN---PDLSPYSVIILDEAHE 128 (466)
Q Consensus 90 ~~~~~~~i~~~T~g~l-----~~~~~~~---~~l~~~~~iIiDEah~ 128 (466)
+..-.++|+|+|+..+ ...+... .....+.+.||||+|.
T Consensus 170 r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 170 KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 3345699999999876 4444322 1456677888888775
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=99.14 E-value=1.2e-10 Score=117.46 Aligned_cols=313 Identities=17% Similarity=0.184 Sum_probs=171.7
Q ss_pred chHhHHHHHHHHhc----CCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCC--
Q 012322 6 ILQYEETIVETVEQ----NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE-- 79 (466)
Q Consensus 6 i~~~q~~i~~~i~~----~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~-- 79 (466)
..++|+..+++..+ ++.-=++...|+|||.....+..... ..++++++|...+..|..+.+.......+..
T Consensus 162 ~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala---~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~a 238 (1518)
T COG4889 162 PRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALA---AARILFLVPSISLLSQTLREWTAQKELDFRASA 238 (1518)
T ss_pred CChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHh---hhheEeecchHHHHHHHHHHHhhccCccceeEE
Confidence 46777777776543 23333455689999944434444332 2689999999999888888775433222111
Q ss_pred -----eeeee---Eee-------------------ccccCccceEEEcCHHHHHHHHhh-CCCCCCCcEEEecCCCcccc
Q 012322 80 -----EVGYA---IRF-------------------EDRTSERTLIKYLTDGVLLREILS-NPDLSPYSVIILDEAHERSL 131 (466)
Q Consensus 80 -----~~g~~---~~~-------------------~~~~~~~~~i~~~T~g~l~~~~~~-~~~l~~~~~iIiDEah~~~~ 131 (466)
.++.. +.. +.+...+--++++|.+.+.+.-.+ ..-+..+++||.|||| |..
T Consensus 239 VcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH-RTt 317 (1518)
T COG4889 239 VCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH-RTT 317 (1518)
T ss_pred EecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh-ccc
Confidence 11100 000 011123456888999888776643 3478899999999999 554
Q ss_pred CHHHHHHHHHHHHHhhh----cCceEEEEecccCh--hHHHhhcC--CCCeEeeCC----------------------Cc
Q 012322 132 NTDILLGLVKRLVNLRA----SKLKILITSATLDG--EKVSKFFS--NCPTLNVPG----------------------KL 181 (466)
Q Consensus 132 ~~~~~~~~l~~i~~~~~----~~~~ii~~SAT~~~--~~~~~~~~--~~~~~~~~~----------------------~~ 181 (466)
.......--..+.+.+. +..+.+.||||+-- +....-.. ...+..+.. ..
T Consensus 318 Ga~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTD 397 (1518)
T COG4889 318 GATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTD 397 (1518)
T ss_pred cceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhcc
Confidence 33221110111111000 13456788898621 11111000 000100000 00
Q ss_pred Cceeeee-------------cCCCCCchHHHHHHHHHHHhhc------------------CCCCCEEEecCCHHHHHHHH
Q 012322 182 YPVEILH-------------SKERPTSYLESALKTAIDIHVR------------------EPEGDVLIFMTGQDDIEKLV 230 (466)
Q Consensus 182 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~lVF~~t~~~~~~l~ 230 (466)
|.+-+.- ...+...........++..+.. .+-.+.+-||.+.+...+++
T Consensus 398 YKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~ 477 (1518)
T COG4889 398 YKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIA 477 (1518)
T ss_pred ceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHH
Confidence 0010000 0011111111222233322210 01136788999988888887
Q ss_pred HHHHHhhhh----ccCC-CCCCeEEEeecCCCCHHHHhccc---CCCCCCcceEEEEecccccccccCCeEEEEeCCccc
Q 012322 231 SKLEDKIRS----LDEG-SCMDAVILPLHGSLPPEMQVRVF---SPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (466)
Q Consensus 231 ~~L~~~~~~----~~~~-~~~~~~v~~~h~~l~~~~r~~~~---~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~ 302 (466)
+.+..-... +... ....+.+-...|.|+..+|.... ..|.+...+|+----++..|||+|..+-||-
T Consensus 478 ~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF----- 552 (1518)
T COG4889 478 ESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF----- 552 (1518)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE-----
Confidence 776553322 1111 11344455555889888885443 3577889999988889999999999999996
Q ss_pred ceeecCCCCccccceeeecHHHHHHhccccCCCCCCeE
Q 012322 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKC 340 (466)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~ 340 (466)
|||+. |....+|-.||+.|..+|+-
T Consensus 553 ---f~pr~----------smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 553 ---FDPRS----------SMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred ---ecCch----------hHHHHHHHHHHHHHhCcCCc
Confidence 45544 56688899999999977763
No 148
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.09 E-value=9.7e-11 Score=105.14 Aligned_cols=150 Identities=22% Similarity=0.303 Sum_probs=97.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-------HH-HHHHHHHHHHHhCCccCC--------e
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-------VA-AVSVARRVAQELGVRLGE--------E 80 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-------~l-~~~~~~~~~~~~~~~~~~--------~ 80 (466)
+.+|+.+.|+||||+||||++..+++...+..|...+...|.+ .. +-|.. .+-..+..++.+ .
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~-~~d~~fP~tV~d~V~~g~~~~ 105 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKS-SVDRSFPITVKDVVLLGRYGK 105 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCccc-ccCCCCCcCHHHHHHccCccc
Confidence 5689999999999999999999999988776665544433211 00 01111 111111111111 1
Q ss_pred eeeeEeec---------------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 81 VGYAIRFE---------------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 81 ~g~~~~~~---------------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
.|+..+.. -..-.+.+|--+|.|+++|.++++.++++++++++||+- ..+|......+++-+.+
T Consensus 106 ~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~-~gvD~~~~~~i~~lL~~ 184 (254)
T COG1121 106 KGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPF-TGVDVAGQKEIYDLLKE 184 (254)
T ss_pred ccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCc-ccCCHHHHHHHHHHHHH
Confidence 11111100 001134667779999999999999999999999999998 68888887777776666
Q ss_pred hhhcCceEEEEecccChhHHHhhcC
Q 012322 146 LRASKLKILITSATLDGEKVSKFFS 170 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~~~~~~~~~~ 170 (466)
.+.++..+++.|+.++ .+.+|++
T Consensus 185 l~~eg~tIl~vtHDL~--~v~~~~D 207 (254)
T COG1121 185 LRQEGKTVLMVTHDLG--LVMAYFD 207 (254)
T ss_pred HHHCCCEEEEEeCCcH--HhHhhCC
Confidence 6666777888888664 4555554
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=1.4e-08 Score=107.71 Aligned_cols=138 Identities=11% Similarity=0.079 Sum_probs=83.9
Q ss_pred CchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhh--hhccCCCCCCeEEEeecCCCCHHHHhcccCCCCC
Q 012322 194 TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKI--RSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP 271 (466)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~--~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~ 271 (466)
.++.......+..+... .+|.+|||+||....+.+++.+.+.. ..+.. ...++.=..+ ..++.++++.|++
T Consensus 504 ~~~~~~l~~~i~~~~~~-~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~----~k~i~~E~~~--~~~~~~~l~~f~~ 576 (705)
T TIGR00604 504 PSLVRNLGELLVEFSKI-IPDGIVVFFPSYSYLENIVSTWKEMGILENIEK----KKLIFVETKD--AQETSDALERYKQ 576 (705)
T ss_pred HHHHHHHHHHHHHHhhc-CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc----CCCEEEeCCC--cchHHHHHHHHHH
Confidence 34555555555555443 45889999999999999998877531 01000 1122211111 1466777777753
Q ss_pred ----CcceEEEEe--cccccccccCC--eEEEEeCCcccceeecCC--------------CCccccceeeecHHHHHHhc
Q 012322 272 ----NCRRFIVST--NIAETSLTVDG--VVYVIDCGYVKQRQYNPS--------------SGMYSLDVVQISKVQANQRV 329 (466)
Q Consensus 272 ----g~~~ilvaT--~~~~~Gidip~--v~~VI~~g~~~~~~~~~~--------------~~~~~~~~~~~s~~~~~Qr~ 329 (466)
|+-.|++|+ ..+..|||+++ .+.||-.|+|-....++. .|..... .........|-+
T Consensus 577 ~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~a~~~v~Qai 655 (705)
T TIGR00604 577 AVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFY-EFDAMRAVNQAI 655 (705)
T ss_pred HHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHH-HHHHHHHHHHHh
Confidence 455799999 88999999997 688988999974332221 1110000 112334567999
Q ss_pred cccCCCCCCe
Q 012322 330 GRAGRTRPGK 339 (466)
Q Consensus 330 GRaGR~~~G~ 339 (466)
||+=|...-.
T Consensus 656 GR~IR~~~D~ 665 (705)
T TIGR00604 656 GRVIRHKDDY 665 (705)
T ss_pred CccccCcCce
Confidence 9999995433
No 150
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.06 E-value=1.1e-09 Score=98.92 Aligned_cols=145 Identities=18% Similarity=0.235 Sum_probs=97.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHHHHHHHHH---HHh----CCccCCeeeee---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRVA---QEL----GVRLGEEVGYA--- 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~~~~~~~~---~~~----~~~~~~~~g~~--- 84 (466)
.+.+|+.+.|.||+||||||++..+.+...+.+|...+...+... ...+.++.++ +.. +..+.+.+..+
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p 103 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYP 103 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCc
Confidence 357899999999999999999999999988877777666665433 2233444332 221 11221111111
Q ss_pred --Eeecccc------------------CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 85 --IRFEDRT------------------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 85 --~~~~~~~------------------~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
..+.... .....+--+|.|+.++.++++...++.+++++||.. ..+|......+++.+.
T Consensus 104 ~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPT-s~LDi~~Q~evl~ll~ 182 (258)
T COG1120 104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPT-SHLDIAHQIEVLELLR 182 (258)
T ss_pred ccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCc-cccCHHHHHHHHHHHH
Confidence 0011000 012335558999999999999999999999999998 7888888888777766
Q ss_pred Hhhh-cCceEEEEecccC
Q 012322 145 NLRA-SKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~-~~~~ii~~SAT~~ 161 (466)
+... .+..+|+..+.+|
T Consensus 183 ~l~~~~~~tvv~vlHDlN 200 (258)
T COG1120 183 DLNREKGLTVVMVLHDLN 200 (258)
T ss_pred HHHHhcCCEEEEEecCHH
Confidence 6553 2567888778766
No 151
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.05 E-value=1.1e-09 Score=94.30 Aligned_cols=145 Identities=19% Similarity=0.252 Sum_probs=96.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch--hHHHHHHHHH---HHHHhCCccCCeeeeeEeec--
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR--RVAAVSVARR---VAQELGVRLGEEVGYAIRFE-- 88 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~--~~l~~~~~~~---~~~~~~~~~~~~~g~~~~~~-- 88 (466)
.+.+|+.++|+||+||||||++.++.....++.|...+-.... +.-..++.++ +.+.++.....++-.++...
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 4678999999999999999999999998888777655544221 1111111111 11222222222211111000
Q ss_pred ---ccc-------------------CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 89 ---DRT-------------------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 89 ---~~~-------------------~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
... ..+.-=.-+|.|+-+|..++++...+++++.+||+. ..+|++...+++.-+...
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPT-SALDPElv~EVL~vm~~L 182 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPT-SALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCc-ccCCHHHHHHHHHHHHHH
Confidence 000 000111127899999999999999999999999999 789999999988888887
Q ss_pred hhcCceEEEEecccC
Q 012322 147 RASKLKILITSATLD 161 (466)
Q Consensus 147 ~~~~~~ii~~SAT~~ 161 (466)
...+...++.|+-+.
T Consensus 183 A~eGmTMivVTHEM~ 197 (240)
T COG1126 183 AEEGMTMIIVTHEMG 197 (240)
T ss_pred HHcCCeEEEEechhH
Confidence 777889999999875
No 152
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.05 E-value=1.9e-08 Score=100.83 Aligned_cols=116 Identities=22% Similarity=0.226 Sum_probs=86.8
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCc---ceEEEEeccccccc
Q 012322 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNC---RRFIVSTNIAETSL 287 (466)
Q Consensus 211 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~---~~ilvaT~~~~~Gi 287 (466)
+.+.++|||-.= -.+-+.|...+.. .++...-+-|.++.++|...++.|.... --.+++|=+.+-||
T Consensus 485 ~~GhRVLIFSQm----t~mLDILeDyc~~------R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 485 EQGHRVLIFSQM----TRMLDILEDYCML------RGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hCCCeEEEeHHH----HHHHHHHHHHHHh------cCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 345689999533 3333444443321 3788888999999999999999986543 34578999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchhh
Q 012322 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (466)
Q Consensus 288 dip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (466)
|+-..++||-|+- .| .|..-.++.+|+-|.|-..+=.+|+|++.+..+.
T Consensus 555 NL~aADtVIlyDS----DW-----------NPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 555 NLTAADTVILYDS----DW-----------NPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred ccccccEEEEecC----CC-----------CchhhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 9999999997431 12 2445558889999999999999999999887655
No 153
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.95 E-value=1.8e-07 Score=94.38 Aligned_cols=126 Identities=20% Similarity=0.303 Sum_probs=95.1
Q ss_pred HHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcc-e-EEE
Q 012322 201 LKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR-R-FIV 278 (466)
Q Consensus 201 ~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~-~-ilv 278 (466)
+..++..+... +.++|+|-.++....-+...|... .++...-+.|..+...|....+.|.++.. . .|+
T Consensus 535 l~~ll~~W~kq-g~rvllFsqs~~mLdilE~fL~~~---------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLL 604 (923)
T KOG0387|consen 535 LAKLLKDWKKQ-GDRVLLFSQSRQMLDILESFLRRA---------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLL 604 (923)
T ss_pred HHHHHHHHhhC-CCEEEEehhHHHHHHHHHHHHHhc---------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEE
Confidence 33444444443 348999999999888888888753 48899999999999999999999997753 3 468
Q ss_pred EecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchhh
Q 012322 279 STNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (466)
Q Consensus 279 aT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (466)
+|-+.+-|+|+-+.+-||- |||.= .|.+-.++.-|+-|-|-.+.=.+|+|.+....+.
T Consensus 605 TTrvGGLGlNLTgAnRVII--------fDPdW-------NPStD~QAreRawRiGQkkdV~VYRL~t~gTIEE 662 (923)
T KOG0387|consen 605 TTRVGGLGLNLTGANRVII--------FDPDW-------NPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEE 662 (923)
T ss_pred EecccccccccccCceEEE--------ECCCC-------CCccchHHHHHHHhhcCccceEEEEEecCCcHHH
Confidence 9999999999998877775 34332 1234447778888888888888999998776543
No 154
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.93 E-value=4.7e-07 Score=86.74 Aligned_cols=274 Identities=16% Similarity=0.144 Sum_probs=154.8
Q ss_pred hHH-HHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEee
Q 012322 9 YEE-TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF 87 (466)
Q Consensus 9 ~q~-~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 87 (466)
+|. -+.-++..|..+++.-.-|-|||.++..+...... .-.+++++|- .+-..+++.+...++...-..+- .+.
T Consensus 202 FQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra--EwplliVcPA-svrftWa~al~r~lps~~pi~vv--~~~ 276 (689)
T KOG1000|consen 202 FQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA--EWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVV--DKS 276 (689)
T ss_pred hhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh--cCcEEEEecH-HHhHHHHHHHHHhcccccceEEE--ecc
Confidence 444 46678899999999999999999888777765543 2246667773 33445555555555432221111 011
Q ss_pred ccc---cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCc-cccCHHHHHHHHHHHHHhhhcCceEEEEecccCh-
Q 012322 88 EDR---TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHE-RSLNTDILLGLVKRLVNLRASKLKILITSATLDG- 162 (466)
Q Consensus 88 ~~~---~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~-~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~- 162 (466)
++. ......|.+.+.+++..+-- -..-.++.++|+||.|. +...+.. .+.+......-.++|++|.|+..
T Consensus 277 ~D~~~~~~t~~~v~ivSye~ls~l~~-~l~~~~~~vvI~DEsH~Lk~sktkr----~Ka~~dllk~akhvILLSGTPavS 351 (689)
T KOG1000|consen 277 SDPLPDVCTSNTVAIVSYEQLSLLHD-ILKKEKYRVVIFDESHMLKDSKTKR----TKAATDLLKVAKHVILLSGTPAVS 351 (689)
T ss_pred cCCccccccCCeEEEEEHHHHHHHHH-HHhcccceEEEEechhhhhccchhh----hhhhhhHHHHhhheEEecCCcccC
Confidence 111 11335788889987765431 11234589999999994 1122222 33333333334579999999832
Q ss_pred ---hHHH-------hhcCCCCe---EeeCCCcCce---------------------------------------eeeecC
Q 012322 163 ---EKVS-------KFFSNCPT---LNVPGKLYPV---------------------------------------EILHSK 190 (466)
Q Consensus 163 ---~~~~-------~~~~~~~~---~~~~~~~~~~---------------------------------------~~~~~~ 190 (466)
+.+. .+|.+-.. -..+++..+. ++.+..
T Consensus 352 RP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~ 431 (689)
T KOG1000|consen 352 RPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVS 431 (689)
T ss_pred CchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEc
Confidence 2111 11100000 0000010110 111110
Q ss_pred CCCCc-h----HHH---------------------------HHHHHHHHh------hcCCCCCEEEecCCHHHHHHHHHH
Q 012322 191 ERPTS-Y----LES---------------------------ALKTAIDIH------VREPEGDVLIFMTGQDDIEKLVSK 232 (466)
Q Consensus 191 ~~~~~-~----~~~---------------------------~~~~~~~~~------~~~~~~~~lVF~~t~~~~~~l~~~ 232 (466)
....+ . +.+ ++..+.... ...++.+.+||+.-..-.+.+...
T Consensus 432 ~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~ 511 (689)
T KOG1000|consen 432 GGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVE 511 (689)
T ss_pred CCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHH
Confidence 00000 0 000 001111111 123445889999888888888777
Q ss_pred HHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCC-cceE-EEEecccccccccCCeEEEEeCCccc
Q 012322 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRRF-IVSTNIAETSLTVDGVVYVIDCGYVK 302 (466)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g-~~~i-lvaT~~~~~Gidip~v~~VI~~g~~~ 302 (466)
+.++ ++...-+.|..+..+|...-+.|... +.+| +++-.++++|+|+.+.+.||-..++.
T Consensus 512 ~~~r----------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~w 573 (689)
T KOG1000|consen 512 VNKR----------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHW 573 (689)
T ss_pred HHHc----------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecC
Confidence 7776 67777888999999999999988754 4454 67888999999999999999755543
No 155
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.90 E-value=3.6e-09 Score=89.99 Aligned_cols=144 Identities=16% Similarity=0.164 Sum_probs=93.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch----------------------hHHHHHHHHHHHHHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR----------------------RVAAVSVARRVAQELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~----------------------~~l~~~~~~~~~~~~~ 74 (466)
+.+|+++.+.||||+||||++..+.....++.|...+....+ |..+.+....++...+
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~ 104 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG 104 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhh
Confidence 468999999999999999999999998888877766554432 3333343333433333
Q ss_pred CccCCeee----eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 75 VRLGEEVG----YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 75 ~~~~~~~g----~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
..-...-. ....++-....+.++--.|.|+.++..++++..++++++|+||+- ..+|.-....+.+.+.+.+.++
T Consensus 105 l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~-sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 105 LSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT-SGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC-CCccHHHHHHHHHHHHHhhcCC
Confidence 22110000 000000000112344447888999999999999999999999998 7888877777555555555546
Q ss_pred ceEEEEecccC
Q 012322 151 LKILITSATLD 161 (466)
Q Consensus 151 ~~ii~~SAT~~ 161 (466)
.-+++.|+-+.
T Consensus 184 r~viFSSH~m~ 194 (245)
T COG4555 184 RAVIFSSHIMQ 194 (245)
T ss_pred cEEEEecccHH
Confidence 66666667663
No 156
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=3.3e-09 Score=92.76 Aligned_cols=134 Identities=20% Similarity=0.211 Sum_probs=85.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeecc---ccCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED---RTSE 93 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~ 93 (466)
+.+|+.+.|.||+||||||++..+++......|...+...+..... +......+ .+++...... ....
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~--------~i~~~~q~~~~~~~~t~ 93 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE-DELPPLRR--------RIGMVFQDFALFPHLTV 93 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc-hhHHHHhh--------cEEEEecCCccCCCCCH
Confidence 5689999999999999999999999987766665444332221110 00011111 1111111000 0011
Q ss_pred cceEEE-cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-CceEEEEeccc
Q 012322 94 RTLIKY-LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (466)
Q Consensus 94 ~~~i~~-~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SAT~ 160 (466)
...+.+ .|.|+.++..+....+.+++++++||+. ..+|.+....+.+.+.+.... +..+++.|+.+
T Consensus 94 ~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 94 LENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKSLQAQLGITVVLVTHDL 161 (178)
T ss_pred HHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 122333 8999999999999899999999999998 788888877765555554443 46677777754
No 157
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.89 E-value=1.4e-08 Score=87.22 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=83.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccce
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (466)
+.+|+.+.+.||+||||||++..+.+...+..|...+...+..... ..+. . ...+++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~--~~~~----~----~~~i~~~~q---------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS--PRDA----R----RAGIAMVYQ---------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC--HHHH----H----hcCeEEEEe----------
Confidence 6789999999999999999999999988776665433322211110 0000 0 011222111
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.+.|+.++..+....+.+++++++||+- ..+|......+.+.+.+....+..+|+.|+.++
T Consensus 83 ---LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 83 ---LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred ---cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 8999999999999999999999999998 788988877766666555433566777776543
No 158
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.88 E-value=1.6e-08 Score=87.55 Aligned_cols=111 Identities=18% Similarity=0.188 Sum_probs=81.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (466)
.+.+|+.+.|.||+||||||++..+.+...++.|...+... .+++... . .
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-----------------------~i~~~~q--~-----~ 70 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI-----------------------TPVYKPQ--Y-----I 70 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE-----------------------EEEEEcc--c-----C
Confidence 56899999999999999999999999988776655333211 0221110 0 0
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC-ceEEEEeccc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK-LKILITSATL 160 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~-~~ii~~SAT~ 160 (466)
. ++.|+.++..+....+.+.+++++||+- ..+|......+.+.+.+..... ..+++.|+.+
T Consensus 71 ~---LSgGq~qrv~laral~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 71 D---LSGGELQRVAIAAALLRNATFYLFDEPS-AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred C---CCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 0 8999999999988899999999999998 7888888777666655544333 5677777754
No 159
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.85 E-value=8.4e-07 Score=91.44 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=73.1
Q ss_pred EecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCC--cceE-EEEecccccccccCCeEE
Q 012322 218 IFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN--CRRF-IVSTNIAETSLTVDGVVY 294 (466)
Q Consensus 218 VF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g--~~~i-lvaT~~~~~Gidip~v~~ 294 (466)
|++.......++.+.+.+. .++.+..+||.|+..+|..+++.|-+. ..+| +.+|-+.+.||++=+...
T Consensus 599 v~Isny~~tldl~e~~~~~---------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsR 669 (776)
T KOG0390|consen 599 VLISNYTQTLDLFEQLCRW---------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASR 669 (776)
T ss_pred EEeccHHHHHHHHHHHHhh---------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccce
Confidence 3344555555555555544 388999999999999999999999654 3244 677889999999988888
Q ss_pred EEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC---CCCeEEEecCccchhh
Q 012322 295 VIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 295 VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~---~~G~~~~l~~~~~~~~ 351 (466)
||.++- .+|| ..- .|-++||-|. ++=..|+|.+...-+.
T Consensus 670 lil~D~----dWNP-----------a~d---~QAmaR~~RdGQKk~v~iYrLlatGtiEE 711 (776)
T KOG0390|consen 670 LILFDP----DWNP-----------AVD---QQAMARAWRDGQKKPVYIYRLLATGTIEE 711 (776)
T ss_pred EEEeCC----CCCc-----------hhH---HHHHHHhccCCCcceEEEEEeecCCCchH
Confidence 876442 2222 222 3666666665 5667888887665443
No 160
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=5.8e-09 Score=90.75 Aligned_cols=130 Identities=24% Similarity=0.294 Sum_probs=84.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccc---cCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDR---TSE 93 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~ 93 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+..... ..+.+ .+++....... ...
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~~--------~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP----EEVKR--------RIGYLPEEPSLYENLTV 90 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch----Hhhhc--------cEEEEecCCccccCCcH
Confidence 5689999999999999999999999987766665444333321111 11111 12211110000 000
Q ss_pred cceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 94 ~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
..++. ++.|+.++..+......+++++++||+- ..+|......+++.+.....++..+++.|+..
T Consensus 91 ~~~~~-LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~ 155 (173)
T cd03230 91 RENLK-LSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELKKEGKTILLSSHIL 155 (173)
T ss_pred HHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 01111 8999999999999899999999999998 78998887776666665544345677766643
No 161
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.83 E-value=1.2e-08 Score=90.44 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=91.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH--------HHHhCCccCCeeeeeEe-
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV--------AQELGVRLGEEVGYAIR- 86 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~--------~~~~~~~~~~~~g~~~~- 86 (466)
.+.+|+.+.|+||+||||||++..+-....++.|...+.......+-......+ .+.++.-...++-.++.
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 467899999999999999999999998888876665555433222211111111 12222111111110000
Q ss_pred ---e----c-----------cc--c--C-ccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 87 ---F----E-----------DR--T--S-ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 87 ---~----~-----------~~--~--~-~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
+ . .. . . .+....-+|.|+.+|..++++...++++|+-||+- -.+|.+.-..+++.+
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPT-gnLD~~t~~~V~~ll 185 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPT-GNLDSKTAKEVLELL 185 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCcc-ccCChHHHHHHHHHH
Confidence 0 0 00 0 0 11224458999999999999999999999999988 678888777766666
Q ss_pred HHhhhc-CceEEEEecccChhHHHhhc
Q 012322 144 VNLRAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 144 ~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
...... +..+|+.|+... ++.+.
T Consensus 186 ~~~~~~~g~tii~VTHd~~---lA~~~ 209 (226)
T COG1136 186 RELNKERGKTIIMVTHDPE---LAKYA 209 (226)
T ss_pred HHHHHhcCCEEEEEcCCHH---HHHhC
Confidence 555432 556777666543 44444
No 162
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.83 E-value=1.2e-08 Score=88.78 Aligned_cols=134 Identities=20% Similarity=0.189 Sum_probs=84.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (466)
.+.+|+.+.|.||+||||||++..+++...+..|...+...+...... ..+.+..+..... .. .+.. ....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~~~q~-~~---~~~~--tv~~ 94 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDP---NELGDHVGYLPQD-DE---LFSG--SIAE 94 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCH---HHHHhheEEECCC-Cc---cccC--cHHH
Confidence 356899999999999999999999999887766654433322111100 0111111100000 00 0000 0001
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
++ .|.|+.++..+....+.+++++++||+- ..+|......+.+.+......+..+++.|+.++
T Consensus 95 ~l--LS~G~~qrv~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 95 NI--LSGGQRQRLGLARALYGNPRILVLDEPN-SHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HC--cCHHHHHHHHHHHHHhcCCCEEEEECCc-cccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 11 8999999999999999999999999998 788888877766655554433567777777653
No 163
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.83 E-value=1.2e-07 Score=99.68 Aligned_cols=118 Identities=23% Similarity=0.277 Sum_probs=93.3
Q ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCC---cceEEEEecccccc
Q 012322 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN---CRRFIVSTNIAETS 286 (466)
Q Consensus 210 ~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g---~~~ilvaT~~~~~G 286 (466)
.+.++++|||-.=+....-|+++|..+ ++...-+-|++..+.|+..++.|... .-..|+||=+.+-|
T Consensus 696 k~~GHrVLIFSQMVRmLDIL~eYL~~r----------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLG 765 (1373)
T KOG0384|consen 696 KEGGHRVLIFSQMVRMLDILAEYLSLR----------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLG 765 (1373)
T ss_pred hcCCceEEEhHHHHHHHHHHHHHHHHc----------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccc
Confidence 345679999988888888888888876 77788899999999999999998643 45678999999999
Q ss_pred cccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchhhh
Q 012322 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDE 352 (466)
Q Consensus 287 idip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~ 352 (466)
||+-..+.||-|+- .+||+ .-.++.-|+-|.|-...=.+|+|+++..++..
T Consensus 766 INLatADTVIIFDS----DWNPQ-----------NDLQAqARaHRIGQkk~VnVYRLVTk~TvEeE 816 (1373)
T KOG0384|consen 766 INLATADTVIIFDS----DWNPQ-----------NDLQAQARAHRIGQKKHVNVYRLVTKNTVEEE 816 (1373)
T ss_pred ccccccceEEEeCC----CCCcc-----------hHHHHHHHHHhhcccceEEEEEEecCCchHHH
Confidence 99999988876441 23333 33466667777777777789999999988773
No 164
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.83 E-value=1e-08 Score=89.84 Aligned_cols=143 Identities=22% Similarity=0.304 Sum_probs=98.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhC-----------CccCCeeeee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-----------VRLGEEVGYA 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~-----------~~~~~~~g~~ 84 (466)
.+.+|+.+.|.||+||||||++..+++...++.|...+.......+.+.....+.+.+| .++.+++++.
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 46789999999999999999999999999999898888887766555544444444443 2333444433
Q ss_pred EeeccccCc----------------cceE-----EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHH---HHHHHH
Q 012322 85 IRFEDRTSE----------------RTLI-----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTD---ILLGLV 140 (466)
Q Consensus 85 ~~~~~~~~~----------------~~~i-----~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~---~~~~~l 140 (466)
.+.....+. .... --++.|+..|..++++...+++++++||.. ..+|+- .+..++
T Consensus 110 lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPt-sGLDPI~a~~~~~LI 188 (263)
T COG1127 110 LREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT-SGLDPISAGVIDELI 188 (263)
T ss_pred hHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCC-CCCCcchHHHHHHHH
Confidence 222221111 0000 016888888998988888899999999987 555554 455556
Q ss_pred HHHHHhhhcCceEEEEecccC
Q 012322 141 KRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 141 ~~i~~~~~~~~~ii~~SAT~~ 161 (466)
+++.... +..++++|+.++
T Consensus 189 ~~L~~~l--g~T~i~VTHDl~ 207 (263)
T COG1127 189 RELNDAL--GLTVIMVTHDLD 207 (263)
T ss_pred HHHHHhh--CCEEEEEECChH
Confidence 6665554 678889898775
No 165
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.83 E-value=1.5e-08 Score=88.81 Aligned_cols=130 Identities=20% Similarity=0.264 Sum_probs=85.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHHHHHHH------HHHHhCCccCCeeeeeEeecc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARR------VAQELGVRLGEEVGYAIRFED 89 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~~~~~~------~~~~~~~~~~~~~g~~~~~~~ 89 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+... ........ +.+.++.. .
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~------------~ 89 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLA------------H 89 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCH------------h
Confidence 56899999999999999999999999877766654443222110 00111111 11112211 0
Q ss_pred ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-CceEEEEecccC
Q 012322 90 RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 90 ~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.....+.-++.|+.++..+....+.+++++++||+- ..+|.+....+.+.+...... +..+|+.|+.++
T Consensus 90 --~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 90 --LADRPFNELSGGERQRVLLARALAQEPPILLLDEPT-SHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred --HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 011234458999999999999899999999999998 788888766655555444332 456777777543
No 166
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.81 E-value=3.1e-08 Score=83.18 Aligned_cols=105 Identities=21% Similarity=0.274 Sum_probs=76.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccce
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+... ..+++...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------------------~~i~~~~~---------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------------------VKIGYFEQ---------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------------------EEEEEEcc----------
Confidence 5689999999999999999999999987766554322110 12222111
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
.+.|+.++..+....+.+++++++||+- ..+|.+....+.+.+.+ . +..+++.|+.+
T Consensus 71 ---lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~-~--~~til~~th~~ 127 (144)
T cd03221 71 ---LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKE-Y--PGTVILVSHDR 127 (144)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHH-c--CCEEEEEECCH
Confidence 8999999999988899999999999998 78888876665444433 2 34566666654
No 167
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=2.5e-08 Score=86.56 Aligned_cols=132 Identities=22% Similarity=0.270 Sum_probs=83.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccce
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (466)
+.+|+.+.+.||+||||||++..+.+...+..|...+...+..... ...+....+...... ..+.. ....+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~---~~~~~~~i~~~~~~~----~~~~~--t~~e~ 95 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD---LESLRKNIAYVPQDP----FLFSG--TIREN 95 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcC---HHHHHhhEEEEcCCc----hhccc--hHHHH
Confidence 5689999999999999999999999988776665444333221110 011111111100000 00000 00011
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
+ +|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+... +..+++.|+.++
T Consensus 96 l--LS~G~~~rl~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~ 156 (171)
T cd03228 96 I--LSGGQRQRIAIARALLRDPPILILDEAT-SALDPETEALILEALRALAK-GKTVIVIAHRLS 156 (171)
T ss_pred h--hCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH
Confidence 1 8999999999888889999999999998 78888887775555554443 566677666543
No 168
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.79 E-value=3.9e-08 Score=85.96 Aligned_cols=135 Identities=19% Similarity=0.189 Sum_probs=85.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (466)
.+.+|+.+.|.||+||||||++..+.+...+..|...+-..+.... ...+....+.-... .. .+. ....+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~~i~~~~q~-~~---~~~-~tv~~~ 94 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL----EKALSSLISVLNQR-PY---LFD-TTLRNN 94 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH----HHHHHhhEEEEccC-Ce---eec-ccHHHh
Confidence 3568999999999999999999999998877666544433332111 11111111110000 00 000 000000
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
-....+.|+.++..+....+.+++++++||+- ..+|......+++.+.+.. .+..+++.|+.++
T Consensus 95 i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~ 158 (178)
T cd03247 95 LGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVL-KDKTLIWITHHLT 158 (178)
T ss_pred hcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH
Confidence 04458899999999999999999999999998 7888887777666665543 3566777776543
No 169
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.78 E-value=2.1e-08 Score=94.49 Aligned_cols=141 Identities=21% Similarity=0.246 Sum_probs=91.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc-h---------------------hHHHHHHHHHHHHHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-R---------------------RVAAVSVARRVAQELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p-~---------------------~~l~~~~~~~~~~~~~ 74 (466)
+.+|+.+.+.||+||||||++..+++...+++|...+...+ . ...+.+..+.++...+
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~ 107 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG 107 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhC
Confidence 56899999999999999999999999888766654444322 1 1122333333334333
Q ss_pred CccC---Ceee---eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 75 VRLG---EEVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 75 ~~~~---~~~g---~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
.... ..+. ....... ..+..+.-.|.|+.++..+...++.+++++|+||+- ..+|......+.+.+.....
T Consensus 108 ~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt-~GLDp~~~~~~~~~l~~l~~ 184 (293)
T COG1131 108 LSKEEAEERIEELLELFGLED--KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT-SGLDPESRREIWELLRELAK 184 (293)
T ss_pred CChhHHHHHHHHHHHHcCCch--hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHh
Confidence 2210 0000 0000011 113456668999999999999999999999999998 89999988886666666665
Q ss_pred cC-ceEEEEeccc
Q 012322 149 SK-LKILITSATL 160 (466)
Q Consensus 149 ~~-~~ii~~SAT~ 160 (466)
.+ ..+++.|+-+
T Consensus 185 ~g~~tvlissH~l 197 (293)
T COG1131 185 EGGVTILLSTHIL 197 (293)
T ss_pred CCCcEEEEeCCcH
Confidence 34 4555555544
No 170
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.76 E-value=4.5e-08 Score=82.61 Aligned_cols=150 Identities=21% Similarity=0.273 Sum_probs=92.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhC-----------CccCCeeeee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-----------VRLGEEVGYA 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~-----------~~~~~~~g~~ 84 (466)
.+..|+.+.++||+|+||||++.+++....++.|...+......-+-....-.+.+..| .++.+.+.+.
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 46789999999999999999999999988887776555444321111111111111111 1111111111
Q ss_pred Eeecccc-------------------CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 85 IRFEDRT-------------------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 85 ~~~~~~~-------------------~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
....... ....-=..+|.|.-++..++++...++.+++-||.. -.+|++.-..+++-+.+
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPT-GNLDp~~s~~im~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPT-GNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCC-CCCChHHHHHHHHHHHH
Confidence 1100000 001111237899999999999999999999999998 78999988887666665
Q ss_pred hhhcCceEEEEecccChhHHHhh
Q 012322 146 LRASKLKILITSATLDGEKVSKF 168 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~~~~~~~~ 168 (466)
....+..+++ ||.+.+.+..+
T Consensus 183 inr~GtTVl~--ATHd~~lv~~~ 203 (223)
T COG2884 183 INRLGTTVLM--ATHDLELVNRM 203 (223)
T ss_pred HhhcCcEEEE--EeccHHHHHhc
Confidence 5544555555 67675555544
No 171
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=1.4e-08 Score=90.69 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=86.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcC---cCCCcEEEEeCchhHHHHHHHHHH---HHHhCCccCCeeeeeEeeccc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG---YTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEVGYAIRFEDR 90 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~---~~~~~~i~~~~p~~~l~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 90 (466)
+.+|+.+.|+||+||||||++..+.+... ...|...+...+.........+.+ .+........++.....+...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 109 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALR 109 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhh
Confidence 57899999999999999999999999876 445544433333211100000000 000000000000000000000
Q ss_pred cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 91 TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 91 ~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
...+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+..........++++.+.+.+.+.++.
T Consensus 110 ~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~ 187 (202)
T cd03233 110 CKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNST-RGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLF 187 (202)
T ss_pred hccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhC
Confidence 0023345568999999999999999999999999998 78888887776666655443222333344443333444444
No 172
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.75 E-value=1e-08 Score=90.95 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=84.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhc--CcCCCcEEEEeCchhHHHHHHHHHHH---HHhCCccCCeeeeeEeeccc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH--GYTKSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVGYAIRFEDR 90 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~--~~~~~~~i~~~~p~~~l~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~ 90 (466)
.+.+|+.+.|.||+||||||++..+++.. .+..|...+...+... .+..+.+. +........++......
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~--~~~~~~i~~~~q~~~~~~~~t~~~~i~~--- 105 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK--RSFRKIIGYVPQDDILHPTLTVRETLMF--- 105 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--HhhhheEEEccCcccCCCCCcHHHHHHH---
Confidence 35789999999999999999999999987 6665654443333211 01111000 00000000000000000
Q ss_pred cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 91 TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 91 ~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
...+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+....+..+|+.|+.++
T Consensus 106 ---~~~~~~LS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 106 ---AAKLRGLSGGERKRVSIALELVSNPSLLFLDEPT-SGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred ---HHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 0011158999999999988899999999999998 789988877766666554433567777777653
No 173
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.74 E-value=1.3e-08 Score=89.27 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=83.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEee------ccc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF------EDR 90 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~ 90 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+...+....... ....+ .+++.... ...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~--~~~~~--------~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR--DAIRA--------GIAYVPEDRKREGLVLD 92 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHH--HHHhC--------CeEEecCCcccCcccCC
Confidence 568999999999999999999999998877666544433222111000 00100 01111000 000
Q ss_pred cCccceEEE---cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 91 TSERTLIKY---LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 91 ~~~~~~i~~---~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
.....++.+ .|.|+.++..+....+.+++++++||+- ..+|......+.+.+......+..+|+.|+.+
T Consensus 93 ~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 93 LSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPT-RGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred CcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 000001111 8999999999999999999999999998 78888887776665555443356677766654
No 174
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.72 E-value=5.8e-08 Score=85.56 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=92.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH--HHHHHH---------------------HHHHh
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA--VSVARR---------------------VAQEL 73 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~--~~~~~~---------------------~~~~~ 73 (466)
+.+|+.+.|+|++||||||++..+++...++.|...+-..|..... ...++. +.+-+
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl 109 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPL 109 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhh
Confidence 5689999999999999999999999988877666555543321110 000000 00000
Q ss_pred CC-----------ccCCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHH
Q 012322 74 GV-----------RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (466)
Q Consensus 74 ~~-----------~~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~ 142 (466)
.. .....+|....+- . ..-.-.+.|+++|..++++...+++++|+||+- ..+|......+++-
T Consensus 110 ~~~~~~~~~~~i~~~L~~VgL~~~~l---~--R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt-SaLD~siQa~Ilnl 183 (252)
T COG1124 110 RPHGLSKSQQRIAELLDQVGLPPSFL---D--RRPHELSGGQRQRIAIARALIPEPKLLILDEPT-SALDVSVQAQILNL 183 (252)
T ss_pred ccCCccHHHHHHHHHHHHcCCCHHHH---h--cCchhcChhHHHHHHHHHHhccCCCEEEecCch-hhhcHHHHHHHHHH
Confidence 00 0000011000000 0 011127999999999999999999999999998 78888876666665
Q ss_pred HHHhhh-cCceEEEEecccChhHHHhhcCCCCeE
Q 012322 143 LVNLRA-SKLKILITSATLDGEKVSKFFSNCPTL 175 (466)
Q Consensus 143 i~~~~~-~~~~ii~~SAT~~~~~~~~~~~~~~~~ 175 (466)
+....+ .+..++++|+.+. +..++.+...+
T Consensus 184 L~~l~~~~~lt~l~IsHdl~---~v~~~cdRi~V 214 (252)
T COG1124 184 LLELKKERGLTYLFISHDLA---LVEHMCDRIAV 214 (252)
T ss_pred HHHHHHhcCceEEEEeCcHH---HHHHHhhheee
Confidence 555443 3678999999765 45555443333
No 175
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.72 E-value=2.2e-08 Score=103.34 Aligned_cols=142 Identities=18% Similarity=0.245 Sum_probs=90.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHH---HH---hCCccCCeeeeeE---e
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA---QE---LGVRLGEEVGYAI---R 86 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~---~~---~~~~~~~~~g~~~---~ 86 (466)
.+.+|+.+.|+||+||||||++..+++...+++|...+...+.+....+..+.++ +. ++-++.++..+.. .
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~ 436 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDAT 436 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCC
Confidence 3568999999999999999999999998888777766655554433222211110 00 0000000000000 0
Q ss_pred ------------ecc---ccCc--cceE----EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 87 ------------FED---RTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 87 ------------~~~---~~~~--~~~i----~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
.++ ..+. ++.+ .-.|.|+.+|..+++..+.+.+++|+||+- ..+|.+....+.+.+.+
T Consensus 437 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~T-SaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 437 DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT-EHLDAGTESELLEDLLA 515 (529)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHH
Confidence 000 0000 1111 237999999999999999999999999998 78999888877777766
Q ss_pred hhhcCceEEEEecc
Q 012322 146 LRASKLKILITSAT 159 (466)
Q Consensus 146 ~~~~~~~ii~~SAT 159 (466)
..+ +..+|+.|+-
T Consensus 516 ~~~-~~TvIiItHr 528 (529)
T TIGR02868 516 ALS-GKTVVVITHH 528 (529)
T ss_pred hcC-CCEEEEEecC
Confidence 544 6777777764
No 176
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=2.1e-07 Score=82.83 Aligned_cols=140 Identities=24% Similarity=0.296 Sum_probs=82.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch------hHHHHHHHHH-----HHHHh--CCc------
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR------RVAAVSVARR-----VAQEL--GVR------ 76 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~------~~l~~~~~~~-----~~~~~--~~~------ 76 (466)
.+.+|+.+.|+||+||||||++..+.+...++.|...+...|. +..+-|...- +.+.. +..
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~ 104 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSK 104 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccch
Confidence 4678999999999999999999999998877766543333221 1111111110 00000 000
Q ss_pred ---------cCCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 77 ---------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 77 ---------~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
.-..+|... +. +..=.-+|.|+.+|..+++....+++++++||+- ..+|.-....+-..+.+..
T Consensus 105 ~e~~~~a~~~L~~VgL~~-~~-----~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF-gALDalTR~~lq~~l~~lw 177 (248)
T COG1116 105 AEARERAKELLELVGLAG-FE-----DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF-GALDALTREELQDELLRLW 177 (248)
T ss_pred HhHHHHHHHHHHHcCCcc-hh-----hcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc-chhhHHHHHHHHHHHHHHH
Confidence 000111100 00 1111227999999999999999999999999987 4555544333333333332
Q ss_pred h-cCceEEEEecccCh
Q 012322 148 A-SKLKILITSATLDG 162 (466)
Q Consensus 148 ~-~~~~ii~~SAT~~~ 162 (466)
. .+..++++|+.++.
T Consensus 178 ~~~~~TvllVTHdi~E 193 (248)
T COG1116 178 EETRKTVLLVTHDVDE 193 (248)
T ss_pred HhhCCEEEEEeCCHHH
Confidence 2 25788888887753
No 177
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.71 E-value=1.3e-08 Score=90.34 Aligned_cols=144 Identities=17% Similarity=0.042 Sum_probs=83.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH----------------HHHHHHHHHhCCc-cCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV----------------SVARRVAQELGVR-LGE 79 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~----------------~~~~~~~~~~~~~-~~~ 79 (466)
+..|+.+.|+|++||||||++..+++...+..|...+...+...... .+.+.+.-..... ...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~ 102 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAE 102 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHH
Confidence 56899999999999999999999999877665543332222110000 0000010000000 000
Q ss_pred eeeee-EeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEec
Q 012322 80 EVGYA-IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (466)
Q Consensus 80 ~~g~~-~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (466)
.+... ....-....+..+.-.+.|+.++..+....+.+++++++||+. ..+|......+.+.+......+..+++.|+
T Consensus 103 ~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 181 (195)
T PRK13541 103 TLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE-TNLSKENRDLLNNLIVMKANSGGIVLLSSH 181 (195)
T ss_pred HHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 00000 0000000112334458899999999888899999999999998 788888866655544333333566777777
Q ss_pred ccC
Q 012322 159 TLD 161 (466)
Q Consensus 159 T~~ 161 (466)
-++
T Consensus 182 ~~~ 184 (195)
T PRK13541 182 LES 184 (195)
T ss_pred Ccc
Confidence 654
No 178
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=4.9e-08 Score=83.50 Aligned_cols=119 Identities=23% Similarity=0.275 Sum_probs=79.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccce
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (466)
+.+|+.+.|.|++|+||||++..+.+......|...+-..+..... ...+.. .+++...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~---~~~~~~--------~i~~~~q---------- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP---LEELRR--------RIGYVPQ---------- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC---HHHHHh--------ceEEEee----------
Confidence 5688999999999999999999999887665554333222211100 001100 1221111
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
.+.|+..+..+......+.+++++||+. ..+|......+.+.+......+..+++.|+.+
T Consensus 81 ---lS~G~~~r~~l~~~l~~~~~i~ilDEp~-~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 140 (157)
T cd00267 81 ---LSGGQRQRVALARALLLNPDLLLLDEPT-SGLDPASRERLLELLRELAEEGRTVIIVTHDP 140 (157)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 8899999888888888899999999998 78888877765555554443345677767654
No 179
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.71 E-value=8.6e-08 Score=84.57 Aligned_cols=144 Identities=18% Similarity=0.264 Sum_probs=91.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-HHH-HHHHHHH-------HHHhC--CccCC--eee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-VAA-VSVARRV-------AQELG--VRLGE--EVG 82 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-~l~-~~~~~~~-------~~~~~--~~~~~--~~g 82 (466)
.++.|++..|.|||||||||++..+.....+..+...++..+.. .-. .++.+++ ...+. ..+.. ..|
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg 132 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSG 132 (257)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeec
Confidence 35789999999999999999999999998887666666655532 111 2332222 11110 11111 111
Q ss_pred eeEe---ec-c------------------ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHH
Q 012322 83 YAIR---FE-D------------------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV 140 (466)
Q Consensus 83 ~~~~---~~-~------------------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l 140 (466)
+... +. . ....+.....+|-|...+.+++++.+.++.++|+||+- ..+|......++
T Consensus 133 ~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~-~GLDl~~re~ll 211 (257)
T COG1119 133 FFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA-QGLDLIAREQLL 211 (257)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcc-ccCChHHHHHHH
Confidence 1100 00 0 00112344457889999999999999999999999987 678877766666
Q ss_pred HHHHHhhh--cCceEEEEeccc
Q 012322 141 KRLVNLRA--SKLKILITSATL 160 (466)
Q Consensus 141 ~~i~~~~~--~~~~ii~~SAT~ 160 (466)
+.+..... ....++++|+-.
T Consensus 212 ~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 212 NRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred HHHHHHhcCCCCceEEEEEcch
Confidence 66655443 267888888854
No 180
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.70 E-value=2e-07 Score=79.25 Aligned_cols=150 Identities=19% Similarity=0.267 Sum_probs=94.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEE-----eCchhHHHHHHHHHHHHHhC----CccCCeeeeeEe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-----TQPRRVAAVSVARRVAQELG----VRLGEEVGYAIR 86 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~-----~~p~~~l~~~~~~~~~~~~~----~~~~~~~g~~~~ 86 (466)
.+.+|+.+.++||+|+||||++..+......+.|...+- ..|.+.++....- +.+.-. .++...++++-.
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI-LkQ~N~i~~rlTV~dLv~FGRf 101 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI-LKQENHINSRLTVRDLVGFGRF 101 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH-HHhhchhhheeEHHHHhhcCCC
Confidence 467899999999999999999999988888777764442 3355555543211 122211 122222221110
Q ss_pred --eccccCc-------------------cceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH---H
Q 012322 87 --FEDRTSE-------------------RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK---R 142 (466)
Q Consensus 87 --~~~~~~~-------------------~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~---~ 142 (466)
...+... +.-+--++.|+.++.+.+....++.+++.+||+- ..+|...-..+++ +
T Consensus 102 PYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPL-NNLDmkHsv~iMk~Lrr 180 (252)
T COG4604 102 PYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL-NNLDMKHSVQIMKILRR 180 (252)
T ss_pred cccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcc-cccchHHHHHHHHHHHH
Confidence 0111110 1112237899999999999999999999999987 7888877555444 4
Q ss_pred HHHhhhcCceEEEEecccChhHHHhhcCCC
Q 012322 143 LVNLRASKLKILITSATLDGEKVSKFFSNC 172 (466)
Q Consensus 143 i~~~~~~~~~ii~~SAT~~~~~~~~~~~~~ 172 (466)
+.... +..++++=+.+| ++.++.+.
T Consensus 181 la~el--~KtiviVlHDIN---fAS~YsD~ 205 (252)
T COG4604 181 LADEL--GKTIVVVLHDIN---FASCYSDH 205 (252)
T ss_pred HHHHh--CCeEEEEEeccc---HHHhhhhh
Confidence 44444 456677778887 66665443
No 181
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=2.1e-08 Score=88.75 Aligned_cols=136 Identities=24% Similarity=0.254 Sum_probs=82.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcC--cCCCcEEEEeCchhHHHHHHHHHH---HHHhCCccCCeeeeeEeeccc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG--YTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEVGYAIRFEDR 90 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~--~~~~~~i~~~~p~~~l~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 90 (466)
.+..|+.+.|+||+||||||++..+.+... ...|...+...+.. .+....+ .+........++.....+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~l~~~-- 103 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---KNFQRSTGYVEQQDVHSPNLTVREALRFS-- 103 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---HHhhhceEEecccCccccCCcHHHHHHHH--
Confidence 356899999999999999999999987542 34444333222221 1111110 0000000000000000000
Q ss_pred cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 91 TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 91 ~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
..+.-+|.|+.++..+....+.+++++++||+. ..+|......+.+.+.+....+..+++.|+-++
T Consensus 104 ----~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 104 ----ALLRGLSVEQRKRLTIGVELAAKPSILFLDEPT-SGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred ----HHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCC-cCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 000158899999999988899999999999998 788988877766666554433567788777654
No 182
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.70 E-value=1.6e-08 Score=91.22 Aligned_cols=151 Identities=22% Similarity=0.238 Sum_probs=93.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH--HHHHHHHHHH--------HHhCCccCCeeeeeE
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV--AAVSVARRVA--------QELGVRLGEEVGYAI 85 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~--l~~~~~~~~~--------~~~~~~~~~~~g~~~ 85 (466)
.+.+|+.+++.|+|||||||++..+.+...+..|...+...|+.. ...+..+++. +.+...+...+.+..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~ 105 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL 105 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhch
Confidence 356799999999999999999999999888876665444444331 1111111110 001101000000000
Q ss_pred ee-----c--------------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 86 RF-----E--------------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 86 ~~-----~--------------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
.. + -....+...-.+|.|+.++..++.....+++++|+||+- ..+|......+++.+.+.
T Consensus 106 ~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt-a~LD~~~~~~l~~~l~~L 184 (235)
T COG1122 106 ENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT-AGLDPKGRRELLELLKKL 184 (235)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCC-CCCCHHHHHHHHHHHHHH
Confidence 00 0 000123455668999999999988889999999999998 789998888877766666
Q ss_pred hhc-CceEEEEecccChhHHHhhc
Q 012322 147 RAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 147 ~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
... +..+|+.|+.+ +.+..|.
T Consensus 185 ~~~~~~tii~~tHd~--~~~~~~a 206 (235)
T COG1122 185 KEEGGKTIIIVTHDL--ELVLEYA 206 (235)
T ss_pred HhcCCCeEEEEeCcH--HHHHhhC
Confidence 553 35677766654 3444444
No 183
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.70 E-value=4.2e-08 Score=87.85 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=85.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-------------------HHHHHH---HHh
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-------------------VARRVA---QEL 73 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-------------------~~~~~~---~~~ 73 (466)
.+.+|+.+.|.||+||||||++..+++...+..|...+...+....... +.+.+. ...
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 102 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH 102 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc
Confidence 3678999999999999999999999998776655433322221100000 000000 000
Q ss_pred CCccCCeee-eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCce
Q 012322 74 GVRLGEEVG-YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (466)
Q Consensus 74 ~~~~~~~~g-~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (466)
+......+. ....+.-....+..+.-.+.|+.++..+....+.+++++++||+. ..+|......+.+.+.+....+..
T Consensus 103 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~t 181 (204)
T PRK13538 103 GPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF-TAIDKQGVARLEALLAQHAEQGGM 181 (204)
T ss_pred CccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCE
Confidence 000000000 000000000112344558999999999999999999999999998 789988877765555544333567
Q ss_pred EEEEecccC
Q 012322 153 ILITSATLD 161 (466)
Q Consensus 153 ii~~SAT~~ 161 (466)
+++.|+.++
T Consensus 182 iii~sh~~~ 190 (204)
T PRK13538 182 VILTTHQDL 190 (204)
T ss_pred EEEEecChh
Confidence 888777643
No 184
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.69 E-value=7.2e-07 Score=96.72 Aligned_cols=134 Identities=16% Similarity=0.052 Sum_probs=81.6
Q ss_pred CEEEEEcCCCCcHH-HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEe-e-ccccCccceE
Q 012322 21 PVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIR-F-EDRTSERTLI 97 (466)
Q Consensus 21 ~~~ii~apTGsGKT-t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~-~-~~~~~~~~~i 97 (466)
+.-+|.--+||||| |++-..-..........++++..++.|-.|....+..............+.. . +........|
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~~i 353 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKGKI 353 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCCcE
Confidence 35788999999999 4433322222234567899999999999998887754322111100000000 0 0011124689
Q ss_pred EEcCHHHHHHHHhhCC---CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 98 KYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 98 ~~~T~g~l~~~~~~~~---~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
+++|-+.+........ .-.+-=++|+|||| |+-.+..... ++. ..+ +...+++|.|+
T Consensus 354 i~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~~~~-~~~---~~~-~a~~~gFTGTP 413 (962)
T COG0610 354 IVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGELAKL-LKK---ALK-KAIFIGFTGTP 413 (962)
T ss_pred EEEEecccchhhhcccccccCCCcEEEEEechh-hccccHHHHH-HHH---Hhc-cceEEEeeCCc
Confidence 9999888877664431 22333489999999 8877665433 332 333 68899999998
No 185
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.69 E-value=2.5e-08 Score=94.83 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=87.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH---HHHhCCccCCeeeee--------
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEVGYA-------- 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~---~~~~~~~~~~~~g~~-------- 84 (466)
.+.+|+.+.+.||+||||||++..+++...+..|...+...+......+..+.+ .+........++...
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 94 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY 94 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence 357899999999999999999999999887766654332222110000111110 000000000000000
Q ss_pred -E--------------eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc
Q 012322 85 -I--------------RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (466)
Q Consensus 85 -~--------------~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~ 149 (466)
. .+.-....+..+.-+|.|+.++..++...+.+++++++||+- ..+|......+.+.+.+....
T Consensus 95 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~~ 173 (302)
T TIGR01188 95 GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT-TGLDPRTRRAIWDYIRALKEE 173 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhC
Confidence 0 000000123445568999999999999999999999999998 789998877766655555444
Q ss_pred CceEEEEecccC
Q 012322 150 KLKILITSATLD 161 (466)
Q Consensus 150 ~~~ii~~SAT~~ 161 (466)
+..+|+.|+.++
T Consensus 174 g~tvi~~sH~~~ 185 (302)
T TIGR01188 174 GVTILLTTHYME 185 (302)
T ss_pred CCEEEEECCCHH
Confidence 567778777653
No 186
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.69 E-value=3.9e-07 Score=80.59 Aligned_cols=153 Identities=21% Similarity=0.182 Sum_probs=96.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe--CchhH---------HHHHHHHHHHHHhCCccCCe---ee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT--QPRRV---------AAVSVARRVAQELGVRLGEE---VG 82 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~--~p~~~---------l~~~~~~~~~~~~~~~~~~~---~g 82 (466)
+.+|+.+.|+|++||||||++..+.+...++.|...+-. .|.-. ...+........+|..-... ..
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~ 129 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVD 129 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHH
Confidence 457899999999999999999999999988877644321 11111 11121111122222110000 00
Q ss_pred eeEee-ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 83 YAIRF-EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 83 ~~~~~-~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.-..+ +-..-.+..+.-.|.|+..|+..+-....+++++|+||+- ...|..|......++.....++..+|+.|+.+
T Consensus 130 eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvl-avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~- 207 (249)
T COG1134 130 EIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVL-AVGDAAFQEKCLERLNELVEKNKTIVLVSHDL- 207 (249)
T ss_pred HHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhh-hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-
Confidence 00000 0000123456668899999999888888899999999987 67788888887888877755577788877754
Q ss_pred hhHHHhhcCCC
Q 012322 162 GEKVSKFFSNC 172 (466)
Q Consensus 162 ~~~~~~~~~~~ 172 (466)
..+.+|.+.+
T Consensus 208 -~~I~~~Cd~~ 217 (249)
T COG1134 208 -GAIKQYCDRA 217 (249)
T ss_pred -HHHHHhcCee
Confidence 4567776543
No 187
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.68 E-value=5.5e-08 Score=86.77 Aligned_cols=144 Identities=18% Similarity=0.129 Sum_probs=86.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH---HHHhCCccCCeeeeeE--------
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEVGYAI-------- 85 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~---~~~~~~~~~~~~g~~~-------- 85 (466)
+.+|+.+.|.||+||||||++..+++...+..|...+-..+.........+.+ .+........++....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~ 103 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSP 103 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCc
Confidence 56899999999999999999999999877766654333322111001111110 0000000000000000
Q ss_pred ---eec-------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 86 ---RFE-------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 86 ---~~~-------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
... -....+..+.-.+.|+.++..+......+++++++||+- ..+|......+.+.+.+....+..+|+
T Consensus 104 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii 182 (200)
T PRK13540 104 GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL-VALDELSLLTIITKIQEHRAKGGAVLL 182 (200)
T ss_pred chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 000 000012334458999999999999999999999999998 788888777765555554333567888
Q ss_pred EecccC
Q 012322 156 TSATLD 161 (466)
Q Consensus 156 ~SAT~~ 161 (466)
.|+...
T Consensus 183 ~sh~~~ 188 (200)
T PRK13540 183 TSHQDL 188 (200)
T ss_pred EeCCch
Confidence 777653
No 188
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=2.9e-08 Score=85.34 Aligned_cols=161 Identities=20% Similarity=0.292 Sum_probs=93.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc-----EEEEeCc---hhHHHHHHHHHHH---HH---hCCccCCee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-----IIGVTQP---RRVAAVSVARRVA---QE---LGVRLGEEV 81 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~-----~i~~~~p---~~~l~~~~~~~~~---~~---~~~~~~~~~ 81 (466)
.+.+++++.++||+||||||++..+-......++. ..+.... .+.-..++.+++. +. +...+...+
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNV 108 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV 108 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHH
Confidence 45789999999999999999999888766544322 2221111 1112222222221 11 011111122
Q ss_pred eeeEeecccc-----------------------CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHH
Q 012322 82 GYAIRFEDRT-----------------------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLG 138 (466)
Q Consensus 82 g~~~~~~~~~-----------------------~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~ 138 (466)
.|..+..... .-+..-.-+|.|+-+|+.+++...-++++|.+||.- ..+|+-....
T Consensus 109 ayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt-SALDPIsT~k 187 (253)
T COG1117 109 AYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT-SALDPISTLK 187 (253)
T ss_pred HHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc-cccCchhHHH
Confidence 2221111100 001112238999999999999999999999999987 6777776665
Q ss_pred HHHHHHHhhhcCceEEEEecccCh-h---HHHhhcCCCCeEeeC
Q 012322 139 LVKRLVNLRASKLKILITSATLDG-E---KVSKFFSNCPTLNVP 178 (466)
Q Consensus 139 ~l~~i~~~~~~~~~ii~~SAT~~~-~---~~~~~~~~~~~~~~~ 178 (466)
++.++...+++..++++|+.+.. . +...||-...+++..
T Consensus 188 -IEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g 230 (253)
T COG1117 188 -IEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230 (253)
T ss_pred -HHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEc
Confidence 45555555568999999998843 2 233455444554443
No 189
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.68 E-value=1.4e-07 Score=85.31 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=85.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH----HHHHHHHH---HHHhC----CccCCeeeee-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA----AVSVARRV---AQELG----VRLGEEVGYA- 84 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l----~~~~~~~~---~~~~~----~~~~~~~g~~- 84 (466)
+.+|+.+.|.||+||||||++..+++...+..|...+...+.... .....+.+ .+... ..+...+.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 105 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPL 105 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHH
Confidence 578999999999999999999999998776655443322221100 00000000 00000 0000000000
Q ss_pred ----Ee--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 85 ----IR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 85 ----~~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
.. ..-....+....-++.|+.++..+....+.+++++++||+- ..+|......+++.+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~ 184 (216)
T TIGR00960 106 RIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPT-GNLDPELSRDIMRLFEEF 184 (216)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHH
Confidence 00 00000012234458999999999999999999999999998 788988877766666554
Q ss_pred hhcCceEEEEeccc
Q 012322 147 RASKLKILITSATL 160 (466)
Q Consensus 147 ~~~~~~ii~~SAT~ 160 (466)
...+..+|+.|+.+
T Consensus 185 ~~~~~tii~vsH~~ 198 (216)
T TIGR00960 185 NRRGTTVLVATHDI 198 (216)
T ss_pred HHCCCEEEEEeCCH
Confidence 43356677777754
No 190
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.68 E-value=2.2e-07 Score=83.79 Aligned_cols=147 Identities=22% Similarity=0.236 Sum_probs=94.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHHHH---HHhCCccCCeeeeeEeecccc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---QELGVRLGEEVGYAIRFEDRT 91 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~ 91 (466)
.+.+|+.+.++|++||||||+...++....++.|...+-..+...+ .....+++. +..|.... +-.+.
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~--------~~~ry 106 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEE--------FLYRY 106 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHH--------HhhcC
Confidence 3678999999999999999999999999988877766655442111 111222222 22221100 00000
Q ss_pred CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceEEEEecccChhHHHhhcC
Q 012322 92 SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLDGEKVSKFFS 170 (466)
Q Consensus 92 ~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SAT~~~~~~~~~~~ 170 (466)
. --.+.|+.+|..+++...-+++++|.||+- ..+|......++.-+..... .+...+++|+.+. +.+++.
T Consensus 107 P-----helSGGQrQRi~IARALal~P~liV~DEpv-SaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~---vv~~is 177 (268)
T COG4608 107 P-----HELSGGQRQRIGIARALALNPKLIVADEPV-SALDVSVQAQILNLLKDLQEELGLTYLFISHDLS---VVRYIS 177 (268)
T ss_pred C-----cccCchhhhhHHHHHHHhhCCcEEEecCch-hhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH---hhhhhc
Confidence 1 126789999999999999999999999998 67787655444333333222 2788999999876 555555
Q ss_pred CCCeEeeCC
Q 012322 171 NCPTLNVPG 179 (466)
Q Consensus 171 ~~~~~~~~~ 179 (466)
+...+...|
T Consensus 178 dri~VMy~G 186 (268)
T COG4608 178 DRIAVMYLG 186 (268)
T ss_pred ccEEEEecC
Confidence 543333333
No 191
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.67 E-value=2.2e-07 Score=80.44 Aligned_cols=126 Identities=22% Similarity=0.250 Sum_probs=78.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-----H-HHHHHHHHHHHHhCCccCCeeeeeEeecc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-----V-AAVSVARRVAQELGVRLGEEVGYAIRFED 89 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-----~-l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 89 (466)
.+.+|+.+.+.||+||||||++..++. ..+...+...... . ...| ..+.+.++...
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q--~~~l~~~~L~~------------ 78 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ--LQFLIDVGLGY------------ 78 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH--HHHHHHcCCCc------------
Confidence 357899999999999999999988753 1222222111000 0 0011 11122222110
Q ss_pred ccCccceEEEcCHHHHHHHHhhCCCCCC--CcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 90 RTSERTLIKYLTDGVLLREILSNPDLSP--YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 90 ~~~~~~~i~~~T~g~l~~~~~~~~~l~~--~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
...+....-++.|+.++..+....+.+ .+++++||+- ..+|......+.+.+......+..+|+.|+.++
T Consensus 79 -~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 79 -LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS-TGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred -cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 001223445789999999988888889 9999999998 788888777665555554433677888777654
No 192
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.67 E-value=3.5e-08 Score=82.61 Aligned_cols=143 Identities=18% Similarity=0.265 Sum_probs=88.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe------CchhHHHHHHHH--HHHHHhCCccCCeeeeeEee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT------QPRRVAAVSVAR--RVAQELGVRLGEEVGYAIRF 87 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~------~p~~~l~~~~~~--~~~~~~~~~~~~~~g~~~~~ 87 (466)
.+..|+.+.|.||+||||||++..+.+...+..|...+.. +|..--+.-+++ .+.. ...+..++|.+...
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFa--HLtV~qNigLGl~P 98 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFA--HLTVAQNIGLGLSP 98 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccch--hhhhhhhhcccCCc
Confidence 3578999999999999999999999999888776655432 332221111111 1100 01122222211111
Q ss_pred ccccCc-------------------cceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 88 EDRTSE-------------------RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 88 ~~~~~~-------------------~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
.-+... +.-=--.+.|+.+|..+++.++++-.++.+||+- ..+|+....+++.-+...+.
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPF-sALdP~LR~eMl~Lv~~l~~ 177 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF-SALDPALRAEMLALVSQLCD 177 (231)
T ss_pred ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCch-hhcCHHHHHHHHHHHHHHHH
Confidence 000000 0001126889999999999888899999999998 78888887666555544443
Q ss_pred -cCceEEEEecccC
Q 012322 149 -SKLKILITSATLD 161 (466)
Q Consensus 149 -~~~~ii~~SAT~~ 161 (466)
++..++++|++++
T Consensus 178 E~~~TllmVTH~~~ 191 (231)
T COG3840 178 ERKMTLLMVTHHPE 191 (231)
T ss_pred hhCCEEEEEeCCHH
Confidence 3677888888774
No 193
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.67 E-value=7.3e-08 Score=85.86 Aligned_cols=142 Identities=19% Similarity=0.064 Sum_probs=84.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-------------------HHHHHHH---HHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-------------------SVARRVA---QELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-------------------~~~~~~~---~~~~ 74 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+...... .+.+.+. ...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG 102 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC
Confidence 56899999999999999999999999876655543222211110000 0001010 0000
Q ss_pred CccCCeeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceE
Q 012322 75 VRLGEEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (466)
Q Consensus 75 ~~~~~~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~i 153 (466)
.. ...+.... ...-....+..+.-.|.|+.++..+....+.+++++++||+. ..+|......+.+.+......+..+
T Consensus 103 ~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~ti 180 (198)
T TIGR01189 103 GA-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT-TALDKAGVALLAGLLRAHLARGGIV 180 (198)
T ss_pred Cc-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 00 00000000 000000012334458899999999999999999999999998 7888887777666665544445677
Q ss_pred EEEeccc
Q 012322 154 LITSATL 160 (466)
Q Consensus 154 i~~SAT~ 160 (466)
|+.|+-.
T Consensus 181 i~~sH~~ 187 (198)
T TIGR01189 181 LLTTHQD 187 (198)
T ss_pred EEEEccc
Confidence 8877754
No 194
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.67 E-value=6e-08 Score=88.06 Aligned_cols=148 Identities=17% Similarity=0.192 Sum_probs=91.9
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH--HHHHHH-------HHHHhCCccCCeee
Q 012322 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA--VSVARR-------VAQELGVRLGEEVG 82 (466)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~--~~~~~~-------~~~~~~~~~~~~~g 82 (466)
+|--.|.+|+.+.+.||+||||||++..+.+...++.|...+-..+..... ....++ .+.....++..++.
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIA 99 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIA 99 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhh
Confidence 344457799999999999999999999999998887776555444211111 111111 22223344444444
Q ss_pred eeEeeccccCc---------------------cceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 83 YAIRFEDRTSE---------------------RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 83 ~~~~~~~~~~~---------------------~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
++.+....... +..-.-++.|+.++..+++...-.++++.+||.- ..+|......+-+
T Consensus 100 FGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf-~ALDa~vr~~lr~ 178 (345)
T COG1118 100 FGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF-GALDAKVRKELRR 178 (345)
T ss_pred hcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCc-hhhhHHHHHHHHH
Confidence 33322211100 1112227899999999999999999999999988 6778776555322
Q ss_pred HHHHhhhc-CceEEEEeccc
Q 012322 142 RLVNLRAS-KLKILITSATL 160 (466)
Q Consensus 142 ~i~~~~~~-~~~ii~~SAT~ 160 (466)
.+.+...+ +...+++|+..
T Consensus 179 wLr~~~~~~~~ttvfVTHD~ 198 (345)
T COG1118 179 WLRKLHDRLGVTTVFVTHDQ 198 (345)
T ss_pred HHHHHHHhhCceEEEEeCCH
Confidence 22222222 67788888754
No 195
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.66 E-value=3.9e-08 Score=86.26 Aligned_cols=144 Identities=20% Similarity=0.194 Sum_probs=88.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeee-----------
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA----------- 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~----------- 84 (466)
.+..|+.+.+.||+|+||||.+..++....++.|...+...|......+..-.+-++.|.....++-..
T Consensus 24 ~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~ 103 (300)
T COG4152 24 EVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP 103 (300)
T ss_pred eecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCc
Confidence 357899999999999999999999999999888877776666443333322222233332211111100
Q ss_pred ------------EeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCce
Q 012322 85 ------------IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (466)
Q Consensus 85 ------------~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (466)
-+++-......+|.-++-|.-++.-.-...++++.++|+||+- ..+|+--...+=+.+...+..+..
T Consensus 104 ~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF-SGLDPVN~elLk~~I~~lk~~Gat 182 (300)
T COG4152 104 KAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF-SGLDPVNVELLKDAIFELKEEGAT 182 (300)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc-cCCChhhHHHHHHHHHHHHhcCCE
Confidence 0111111223445556777666555444467889999999998 677665544433344455555777
Q ss_pred EEEEeccc
Q 012322 153 ILITSATL 160 (466)
Q Consensus 153 ii~~SAT~ 160 (466)
+|+.|+-|
T Consensus 183 IifSsH~M 190 (300)
T COG4152 183 IIFSSHRM 190 (300)
T ss_pred EEEecchH
Confidence 78777776
No 196
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.66 E-value=3.7e-08 Score=93.70 Aligned_cols=144 Identities=19% Similarity=0.186 Sum_probs=88.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH----------------------HHHHHHHHHHHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA----------------------AVSVARRVAQELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l----------------------~~~~~~~~~~~~~ 74 (466)
+..|+.+.+.||+||||||++..+++...++.|...+...+.... +.+....++...+
T Consensus 30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (306)
T PRK13537 30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG 109 (306)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC
Confidence 568999999999999999999999998877665433322221100 1111111111111
Q ss_pred CccCC---eeeee-EeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 75 VRLGE---EVGYA-IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 75 ~~~~~---~~g~~-~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
..... .+... ....-....+..+.-.|.|+.++..+....+.+++++++||+- ..+|......+...+.+....+
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt-~gLD~~~~~~l~~~l~~l~~~g 188 (306)
T PRK13537 110 LSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT-TGLDPQARHLMWERLRSLLARG 188 (306)
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCC
Confidence 10000 00000 0000001123445568999999999999999999999999998 7899988777666555544435
Q ss_pred ceEEEEecccC
Q 012322 151 LKILITSATLD 161 (466)
Q Consensus 151 ~~ii~~SAT~~ 161 (466)
..+++.|+-++
T Consensus 189 ~till~sH~l~ 199 (306)
T PRK13537 189 KTILLTTHFME 199 (306)
T ss_pred CEEEEECCCHH
Confidence 67777777654
No 197
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=2.4e-08 Score=89.94 Aligned_cols=144 Identities=17% Similarity=0.227 Sum_probs=83.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-------------------HHHHHHHHHHHHHhCCc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-------------------VAAVSVARRVAQELGVR 76 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-------------------~l~~~~~~~~~~~~~~~ 76 (466)
.+.+|+.+.|.||+||||||++..+.+...+..|...+...+.. ..+.+.........+..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 101 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK 101 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC
Confidence 35789999999999999999999999987665543322211110 01111111001111100
Q ss_pred cCC---eee-eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCce
Q 012322 77 LGE---EVG-YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (466)
Q Consensus 77 ~~~---~~g-~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (466)
... .+. ......-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+......+..
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~-~~LD~~~~~~~~~~l~~~~~~~~t 180 (210)
T cd03269 102 KEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF-SGLDPVNVELLKDVIRELARAGKT 180 (210)
T ss_pred hHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCE
Confidence 000 000 000000000012234458999999999888889999999999998 788888877766665554433556
Q ss_pred EEEEeccc
Q 012322 153 ILITSATL 160 (466)
Q Consensus 153 ii~~SAT~ 160 (466)
+++.|+.+
T Consensus 181 ii~~sH~~ 188 (210)
T cd03269 181 VILSTHQM 188 (210)
T ss_pred EEEECCCH
Confidence 77766654
No 198
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.66 E-value=9.6e-08 Score=85.61 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=84.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-----------------H-HHHHHHHHHHHhCCccC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-----------------A-AVSVARRVAQELGVRLG 78 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-----------------l-~~~~~~~~~~~~~~~~~ 78 (466)
+..|+.+.|.||+||||||++..+++...+..|...+...+... . ...+.+.+.-.... ..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~-~~ 101 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKE-LD 101 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhh-cC
Confidence 67899999999999999999999999876655543222211100 0 00111111000000 00
Q ss_pred C---eeee-eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEE
Q 012322 79 E---EVGY-AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (466)
Q Consensus 79 ~---~~g~-~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (466)
. .+.. .....-....+..+.-.|.|+.++..+....+.+++++++||+- ..+|......+.+.+......+..+|
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii 180 (205)
T cd03226 102 AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT-SGLDYKNMERVGELIRELAAQGKAVI 180 (205)
T ss_pred ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 0 0000 00000000112344568999999999998889999999999998 78888887776555555434356677
Q ss_pred EEeccc
Q 012322 155 ITSATL 160 (466)
Q Consensus 155 ~~SAT~ 160 (466)
+.|+.+
T Consensus 181 ~~sH~~ 186 (205)
T cd03226 181 VITHDY 186 (205)
T ss_pred EEeCCH
Confidence 777754
No 199
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.65 E-value=8.6e-09 Score=106.53 Aligned_cols=243 Identities=15% Similarity=0.100 Sum_probs=143.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH-hcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCc---cCCeeeeeEeeccccCccce
Q 012322 21 PVVVVIGETGSGKSTQLSQILH-RHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR---LGEEVGYAIRFEDRTSERTL 96 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~-~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~ 96 (466)
.+.++-+|||+|||..+...+. .....++.+++++.|.++++....+.+.+..-.. +....|. +..+-..-.+++
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd-~~pd~~~v~~~~ 1022 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGD-VTPDVKAVREAD 1022 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCc-cCCChhheecCc
Confidence 4567789999999954443333 3334456799999999999888777766554333 2222221 111112235688
Q ss_pred EEEcCHHHHHHHH---hhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH----HHhhhcCceEEEEe-cccChhHHHhh
Q 012322 97 IKYLTDGVLLREI---LSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL----VNLRASKLKILITS-ATLDGEKVSKF 168 (466)
Q Consensus 97 i~~~T~g~l~~~~---~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i----~~~~~~~~~ii~~S-AT~~~~~~~~~ 168 (466)
+++.||+...... .....++.++.+|+||.|+..-+.+..+..+... .....+..+++++| |-.+..++++|
T Consensus 1023 ~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~w 1102 (1230)
T KOG0952|consen 1023 IVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADW 1102 (1230)
T ss_pred eEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHH
Confidence 9999999765544 4445899999999999998555544433322211 11222356677765 44477889999
Q ss_pred cCCCCeEee--CCCcCceeeeecCCCCCchHHHH---HHHHHHH-hhcCCCCCEEEecCCHHHHHHHHHHHHHhhhh---
Q 012322 169 FSNCPTLNV--PGKLYPVEILHSKERPTSYLESA---LKTAIDI-HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS--- 239 (466)
Q Consensus 169 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~--- 239 (466)
++-.+.... ..++.|.+.++...+...|...+ -+...+. ....+..+++||+.+++...-.+..|-..+..
T Consensus 1103 l~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~ 1182 (1230)
T KOG0952|consen 1103 LNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDN 1182 (1230)
T ss_pred hCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHhhccCCCC
Confidence 986665433 33566666666665553332222 1222222 22345679999999887655544444322110
Q ss_pred ------------------c---cCCCCCCeEEEeecCCCCHHHHhc
Q 012322 240 ------------------L---DEGSCMDAVILPLHGSLPPEMQVR 264 (466)
Q Consensus 240 ------------------~---~~~~~~~~~v~~~h~~l~~~~r~~ 264 (466)
. +-....++.+..||+|+...+|..
T Consensus 1183 p~~fl~~de~e~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~ 1228 (1230)
T KOG0952|consen 1183 PKQFLNMDELELEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKI 1228 (1230)
T ss_pred chhccCCCHHHHHHHHHHhcccchhhhhhhhhhhhhhhcccccccc
Confidence 0 000124667777888887777643
No 200
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.64 E-value=8.6e-08 Score=86.00 Aligned_cols=145 Identities=17% Similarity=0.099 Sum_probs=84.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHHHHHHhCCccCCeeeeeE---------
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVAQELGVRLGEEVGYAI--------- 85 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~~~~~~~~~~~~~~g~~~--------- 85 (466)
.+.+|+.+.|.||+||||||++..+.+......|...+...+.... .......+.+.........+....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~ 103 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGG 103 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCC
Confidence 3568999999999999999999999998766655433322211100 000000000000000000000000
Q ss_pred e----------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 86 R----------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 86 ~----------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
. ..-....+..+.-.|.|+.++..+....+.+++++++||+. ..+|......+.+.+......+..+++
T Consensus 104 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii 182 (207)
T PRK13539 104 EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT-AALDAAAVALFAELIRAHLAQGGIVIA 182 (207)
T ss_pred cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 0 00000012333458999999999988899999999999998 788888877765555544433567788
Q ss_pred EecccC
Q 012322 156 TSATLD 161 (466)
Q Consensus 156 ~SAT~~ 161 (466)
.|+.+.
T Consensus 183 ~sH~~~ 188 (207)
T PRK13539 183 ATHIPL 188 (207)
T ss_pred EeCCch
Confidence 777653
No 201
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.64 E-value=9.2e-08 Score=87.96 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=84.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcE------EEEeCch-----hHHHHHHHHHHHHHhCCccCCeeee-e
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI------IGVTQPR-----RVAAVSVARRVAQELGVRLGEEVGY-A 84 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~------i~~~~p~-----~~l~~~~~~~~~~~~~~~~~~~~g~-~ 84 (466)
+..|+.+.|.||+||||||++..+.+...+..|.. +.++... ...+.+............. ..... .
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~l 100 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHP-YFKTEIA 100 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccH-HHHHHHH
Confidence 56789999999999999999999999876655432 2222111 0112221111100000000 00000 0
Q ss_pred EeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceEEEEecccC
Q 012322 85 IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (466)
Q Consensus 85 ~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SAT~~ 161 (466)
....-....+..+.-+|.|+.++..+....+.+.+++++||+- ..+|......+.+.+.+... .+..+|+.|+-+.
T Consensus 101 ~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~ 177 (246)
T cd03237 101 KPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPS-AYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII 177 (246)
T ss_pred HHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 0000000112344558999999999999999999999999998 78888877765555554433 2567788777543
No 202
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.64 E-value=9.2e-08 Score=85.37 Aligned_cols=143 Identities=20% Similarity=0.175 Sum_probs=84.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH---HHHhCC----ccCCeeeee--Eee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGV----RLGEEVGYA--IRF 87 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~---~~~~~~----~~~~~~g~~--~~~ 87 (466)
+..|+.+.|.|++||||||++..+++...+..|...+...+.........+.+ .+.... .+....... ...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 102 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHS 102 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccccc
Confidence 67899999999999999999999999877666544332222110000000000 000000 000000000 000
Q ss_pred c-----------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEE
Q 012322 88 E-----------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (466)
Q Consensus 88 ~-----------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~ 156 (466)
. -....+..+.-.+.|+.++..+....+.+++++|+||+- ..+|......+.+.+.+....+..+|+.
T Consensus 103 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~ 181 (201)
T cd03231 103 DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT-TALDKAGVARFAEAMAGHCARGGMVVLT 181 (201)
T ss_pred HHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0 000012334558999999999998899999999999998 7888888777666555444335667777
Q ss_pred eccc
Q 012322 157 SATL 160 (466)
Q Consensus 157 SAT~ 160 (466)
|+..
T Consensus 182 sH~~ 185 (201)
T cd03231 182 THQD 185 (201)
T ss_pred ecCc
Confidence 7643
No 203
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.64 E-value=1.6e-07 Score=85.11 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=86.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HH---H-HHHH---HHHh----CCccCCee--
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VS---V-ARRV---AQEL----GVRLGEEV-- 81 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~---~-~~~~---~~~~----~~~~~~~~-- 81 (466)
.+..|+.+.|+||+||||||++..+++...+..|...+...+..... .+ . .+.+ .+.. +..+....
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 105 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVEL 105 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHH
Confidence 35689999999999999999999999987766554433222211100 00 0 0000 0000 00000000
Q ss_pred -----eeeE-----e-------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 82 -----GYAI-----R-------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 82 -----g~~~-----~-------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
+... . +.-....+..+.-+|.|+.++..+....+.+++++++||+. ..+|......+.+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~ 184 (218)
T cd03255 106 PLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPT-GNLDSETGKEVMELLR 184 (218)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCc-ccCCHHHHHHHHHHHH
Confidence 0000 0 00000012234458999999999999999999999999998 7888888777656555
Q ss_pred Hhhh-cCceEEEEecccC
Q 012322 145 NLRA-SKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~-~~~~ii~~SAT~~ 161 (466)
.... .+..+|+.|+.++
T Consensus 185 ~~~~~~~~tii~~sH~~~ 202 (218)
T cd03255 185 ELNKEAGTTIVVVTHDPE 202 (218)
T ss_pred HHHHhcCCeEEEEECCHH
Confidence 5443 2567888888764
No 204
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.63 E-value=1.2e-07 Score=85.57 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=84.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH----HHHHHHHH---HHH---h-CCccCCee---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA----AVSVARRV---AQE---L-GVRLGEEV--- 81 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l----~~~~~~~~---~~~---~-~~~~~~~~--- 81 (466)
.+.+|+.+.|+||+||||||++..+++...+..|...+...+.... ..+..+.+ .+. + ...+....
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 103 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALP 103 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHH
Confidence 4678999999999999999999999998766555433322111000 00000000 000 0 00000000
Q ss_pred ----eeeEe------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 82 ----GYAIR------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 82 ----g~~~~------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
+.... +.-....+..+.-.|.|+.++..+....+.+++++++||+. ..+|......+.+.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~ 182 (214)
T TIGR02673 104 LEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPT-GNLDPDLSERILDLLKR 182 (214)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc-ccCCHHHHHHHHHHHHH
Confidence 00000 00000012233458999999999999899999999999998 78888887776665555
Q ss_pred hhhcCceEEEEeccc
Q 012322 146 LRASKLKILITSATL 160 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~ 160 (466)
....+..+++.|+.+
T Consensus 183 ~~~~~~tii~~tH~~ 197 (214)
T TIGR02673 183 LNKRGTTVIVATHDL 197 (214)
T ss_pred HHHcCCEEEEEeCCH
Confidence 443356777777754
No 205
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.63 E-value=2e-07 Score=80.38 Aligned_cols=119 Identities=16% Similarity=0.161 Sum_probs=78.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE-------EeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeec
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-------VTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE 88 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~-------~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 88 (466)
.+.+|+.+.|.||+||||||++..+++...+..|...+ ++.+..... ...+.+.... .
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~---~~tv~~nl~~------------~ 87 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP---LGTLREQLIY------------P 87 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc---cccHHHHhhc------------c
Confidence 35689999999999999999999999987766554322 111110000 0000010000 0
Q ss_pred cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 89 DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 89 ~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
...-.+.|+.++..+....+.+++++++||+- ..+|.+....+.+.+.+ . +..+++.|+-+
T Consensus 88 -------~~~~LS~G~~~rv~laral~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~-~--~~tiiivsh~~ 148 (166)
T cd03223 88 -------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT-SALDEESEDRLYQLLKE-L--GITVISVGHRP 148 (166)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc-cccCHHHHHHHHHHHHH-h--CCEEEEEeCCh
Confidence 12347899999999998899999999999988 78888876665444433 2 35677777765
No 206
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.62 E-value=3.7e-08 Score=94.78 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=91.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH----------------------HHHHHHHHHHHHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------------AAVSVARRVAQELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~----------------------l~~~~~~~~~~~~~ 74 (466)
+..|+.+.+.||+||||||++..+++...++.|...+...+... .+.+....+....+
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 143 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG 143 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC
Confidence 57899999999999999999999999887766543333222110 01111111111111
Q ss_pred CccCC---ee-eeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 75 VRLGE---EV-GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 75 ~~~~~---~~-g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
..... .. .....+.-....+..+.-.|.|+.++..+....+.+++++|+||+- ..+|......+++.+.+....+
T Consensus 144 ~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt-~gLD~~~r~~l~~~l~~l~~~g 222 (340)
T PRK13536 144 MSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT-TGLDPHARHLIWERLRSLLARG 222 (340)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCC
Confidence 00000 00 0000000001123455668999999999999999999999999998 7899988877666666554445
Q ss_pred ceEEEEecccChhHHHhhc
Q 012322 151 LKILITSATLDGEKVSKFF 169 (466)
Q Consensus 151 ~~ii~~SAT~~~~~~~~~~ 169 (466)
..+++.|+-++ .+.++.
T Consensus 223 ~tilisSH~l~--e~~~~~ 239 (340)
T PRK13536 223 KTILLTTHFME--EAERLC 239 (340)
T ss_pred CEEEEECCCHH--HHHHhC
Confidence 67777777554 344444
No 207
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.62 E-value=4.9e-08 Score=88.84 Aligned_cols=143 Identities=17% Similarity=0.254 Sum_probs=92.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch----hHHHHHHHHHH---HHHhCCccCC----eeeee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR----RVAAVSVARRV---AQELGVRLGE----EVGYA 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~----~~l~~~~~~~~---~~~~~~~~~~----~~g~~ 84 (466)
.+..|+.+.|+|.+|+||||++.++-....++.|...+..... ....++..+++ .+.++.-... .+.+.
T Consensus 28 ~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~P 107 (339)
T COG1135 28 EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP 107 (339)
T ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhh
Confidence 4678999999999999999999999998888877766654322 11222222222 2333322212 22221
Q ss_pred Eeecccc-------------------CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHH---HHHHHHH
Q 012322 85 IRFEDRT-------------------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI---LLGLVKR 142 (466)
Q Consensus 85 ~~~~~~~-------------------~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~---~~~~l~~ 142 (466)
....... ..+.--.-+|.|+.++..++++...++++++.|||- ..+|+.. .+.+++.
T Consensus 108 Leiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaT-SALDP~TT~sIL~LL~~ 186 (339)
T COG1135 108 LELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEAT-SALDPETTQSILELLKD 186 (339)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCcc-ccCChHHHHHHHHHHHH
Confidence 1111100 001111227899999999999999999999999998 6777776 4555555
Q ss_pred HHHhhhcCceEEEEecccC
Q 012322 143 LVNLRASKLKILITSATLD 161 (466)
Q Consensus 143 i~~~~~~~~~ii~~SAT~~ 161 (466)
+-+.+ +..+++.|+.|+
T Consensus 187 In~~l--glTIvlITHEm~ 203 (339)
T COG1135 187 INREL--GLTIVLITHEME 203 (339)
T ss_pred HHHHc--CCEEEEEechHH
Confidence 55444 789999999886
No 208
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.62 E-value=1.4e-07 Score=83.42 Aligned_cols=144 Identities=21% Similarity=0.283 Sum_probs=84.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH---HHHHHHHHH---HHH-----hCCccCCee----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV---AAVSVARRV---AQE-----LGVRLGEEV---- 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~---l~~~~~~~~---~~~-----~~~~~~~~~---- 81 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+... ......+.+ .+. +...+....
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~ 94 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGP 94 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHH
Confidence 67899999999999999999999998776655543322211100 000000000 000 000000000
Q ss_pred ---eeeE-----e-------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 82 ---GYAI-----R-------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 82 ---g~~~-----~-------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
+... . ..-....+..+.-.+.|+.++..+....+.+++++++||+- ..+|......+.+.+...
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~ 173 (190)
T TIGR01166 95 LNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT-AGLDPAGREQMLAILRRL 173 (190)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHH
Confidence 0000 0 00000112344558999999999988899999999999998 788888877766666555
Q ss_pred hhcCceEEEEecccC
Q 012322 147 RASKLKILITSATLD 161 (466)
Q Consensus 147 ~~~~~~ii~~SAT~~ 161 (466)
...+..+++.|+.++
T Consensus 174 ~~~~~tili~sH~~~ 188 (190)
T TIGR01166 174 RAEGMTVVISTHDVD 188 (190)
T ss_pred HHcCCEEEEEeeccc
Confidence 444567888887653
No 209
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.61 E-value=1e-08 Score=96.41 Aligned_cols=143 Identities=19% Similarity=0.221 Sum_probs=82.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEE------eCchhHHHHHHHHHHHHHhCCccCCeeeeeEeecc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV------TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED 89 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~------~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 89 (466)
.+.+|+.+++.||+||||||++..+++...+++|...+. +.|.+--.--+++..+-+...++..+.++..+...
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~ 104 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG 104 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC
Confidence 467899999999999999999999999888776654332 22211000000111111111111111111111100
Q ss_pred -------------------ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-c
Q 012322 90 -------------------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-S 149 (466)
Q Consensus 90 -------------------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~ 149 (466)
...-+....-+|.|+.+|..+.+....+++++.+||.- ..+|......+-..+.+... -
T Consensus 105 ~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl-SnLDa~lR~~mr~ei~~lh~~l 183 (338)
T COG3839 105 VPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL-SNLDAKLRVLMRSEIKKLHERL 183 (338)
T ss_pred CchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch-hHhhHHHHHHHHHHHHHHHHhc
Confidence 00012233448999999999999999999999999987 66777765554444443332 1
Q ss_pred CceEEEEecc
Q 012322 150 KLKILITSAT 159 (466)
Q Consensus 150 ~~~ii~~SAT 159 (466)
+..+|..|+.
T Consensus 184 ~~T~IYVTHD 193 (338)
T COG3839 184 GTTTIYVTHD 193 (338)
T ss_pred CCcEEEEcCC
Confidence 3455665553
No 210
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1e-07 Score=96.18 Aligned_cols=143 Identities=24% Similarity=0.269 Sum_probs=93.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHH-H---HHH---hCCccCCeeeeeEeec
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-V---AQE---LGVRLGEEVGYAIRFE 88 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~-~---~~~---~~~~~~~~~g~~~~~~ 88 (466)
.+..|+.+.++||+|+||||++..+.....++.|...+-..|.+..-....++ + .++ ++..+.+++.|+....
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~ 569 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNA 569 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCC
Confidence 57899999999999999999999999999998888888888876554333332 1 111 1222222233222110
Q ss_pred c------------------ccCccc------eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 89 D------------------RTSERT------LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 89 ~------------------~~~~~~------~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
. ....+. +=.-++.|+.+|..++++.++++.++|+|||. ..+|.+.-.. ++..+
T Consensus 570 t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEAT-SALDaeSE~l-Vq~aL 647 (716)
T KOG0058|consen 570 TDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEAT-SALDAESEYL-VQEAL 647 (716)
T ss_pred CHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechh-hhcchhhHHH-HHHHH
Confidence 0 000111 11237899999999999999999999999998 6777776554 44444
Q ss_pred HhhhcCceEEEEeccc
Q 012322 145 NLRASKLKILITSATL 160 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~ 160 (466)
.....+..++..-+-+
T Consensus 648 ~~~~~~rTVlvIAHRL 663 (716)
T KOG0058|consen 648 DRLMQGRTVLVIAHRL 663 (716)
T ss_pred HHhhcCCeEEEEehhh
Confidence 3333355566655544
No 211
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.61 E-value=9.8e-08 Score=85.77 Aligned_cols=142 Identities=23% Similarity=0.308 Sum_probs=82.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH---HHHhC----CccCCee-------e
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELG----VRLGEEV-------G 82 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~---~~~~~----~~~~~~~-------g 82 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+.... .+..+.+ .+... .++.... +
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 101 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRRIGALIEAPGFYPNLTARENLRLLARLLG 101 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC
Confidence 568999999999999999999999998766555433322221110 0000000 00000 0000000 0
Q ss_pred eeE-eec-------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEE
Q 012322 83 YAI-RFE-------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (466)
Q Consensus 83 ~~~-~~~-------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (466)
... ... -....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+.+....+..+|
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii 180 (208)
T cd03268 102 IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT-NGLDPDGIKELRELILSLRDQGITVL 180 (208)
T ss_pred CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc-ccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 000 000 000012233448899999999888889999999999998 78888887776665555443355666
Q ss_pred EEeccc
Q 012322 155 ITSATL 160 (466)
Q Consensus 155 ~~SAT~ 160 (466)
+.|+.+
T Consensus 181 ~~tH~~ 186 (208)
T cd03268 181 ISSHLL 186 (208)
T ss_pred EEcCCH
Confidence 666543
No 212
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.60 E-value=4.9e-08 Score=87.60 Aligned_cols=144 Identities=21% Similarity=0.219 Sum_probs=85.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-----HHHHHHHHHH---HHHhC----CccCCee---
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-----VAAVSVARRV---AQELG----VRLGEEV--- 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-----~l~~~~~~~~---~~~~~----~~~~~~~--- 81 (466)
+..|+.+.|.||+||||||++..+++...+..|...+...+.. .......+.+ .+... ..+....
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~ 100 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLG 100 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHH
Confidence 5689999999999999999999999987766554333222210 0000000000 00000 0000000
Q ss_pred ----eeeEe------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 82 ----GYAIR------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 82 ----g~~~~------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
+.... ..-....+..+.-.+.|+.++..+....+.+++++++||+- ..+|......+.+.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~ 179 (206)
T TIGR03608 101 LKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPT-GSLDPKNRDEVLDLLLE 179 (206)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-CCCCHHHHHHHHHHHHH
Confidence 00000 00000112344558999999999999899999999999998 78888887776665555
Q ss_pred hhhcCceEEEEecccC
Q 012322 146 LRASKLKILITSATLD 161 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~ 161 (466)
....+..+|+.|+.++
T Consensus 180 ~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 180 LNDEGKTIIIVTHDPE 195 (206)
T ss_pred HHhcCCEEEEEeCCHH
Confidence 4433567777777653
No 213
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=2.4e-07 Score=84.83 Aligned_cols=151 Identities=19% Similarity=0.238 Sum_probs=88.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH----HHHHHHHHH---HHHhCC----ccCCeeee-
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----AAVSVARRV---AQELGV----RLGEEVGY- 83 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~----l~~~~~~~~---~~~~~~----~~~~~~g~- 83 (466)
.+..|+.+.|+||+||||||++..+++...+..|...+...+... ......+.+ .+.... .+.....+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~ 106 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP 106 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHH
Confidence 357899999999999999999999999887766654332222100 000000000 000000 00000000
Q ss_pred ----eEe--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 84 ----AIR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 84 ----~~~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
... ..-....+....-+|.|+.++..+....+.+++++++||+. ..+|......+.+.+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~ 185 (233)
T cd03258 107 LEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT-SALDPETTQSILALLRD 185 (233)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC-CcCCHHHHHHHHHHHHH
Confidence 000 00000012334458999999999998899999999999998 78898887776665555
Q ss_pred hhhc-CceEEEEecccChhHHHhhc
Q 012322 146 LRAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 146 ~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
.... +..+|+.|+.+ +.+..+.
T Consensus 186 ~~~~~~~tvii~sH~~--~~~~~~~ 208 (233)
T cd03258 186 INRELGLTIVLITHEM--EVVKRIC 208 (233)
T ss_pred HHHHcCCEEEEEeCCH--HHHHHhC
Confidence 4432 56677777754 3444444
No 214
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.59 E-value=6.3e-07 Score=80.84 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=87.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH---HHHHHHHHH---HHHhC----CccCCeeee--
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV---AAVSVARRV---AQELG----VRLGEEVGY-- 83 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~---l~~~~~~~~---~~~~~----~~~~~~~g~-- 83 (466)
.+..|+.+.+.||+||||||++..+++...+..|...+-..+... ......+.+ .+... ..+...+.+
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~ 101 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAP 101 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHH
Confidence 356899999999999999999999999877665543332222100 000000000 00000 000000000
Q ss_pred ----eEe--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 84 ----AIR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 84 ----~~~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
... +.-....+..+.-.+.|+.++..+....+.+++++++||+. ..+|......+.+.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~ 180 (213)
T cd03262 102 IKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT-SALDPELVGEVLDVMKD 180 (213)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHH
Confidence 000 00000112345568999999999998899999999999998 78888887776555555
Q ss_pred hhhcCceEEEEecccChhHHHhhc
Q 012322 146 LRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
....+..+|+.|+-+ +.+.++.
T Consensus 181 ~~~~~~tvi~~sh~~--~~~~~~~ 202 (213)
T cd03262 181 LAEEGMTMVVVTHEM--GFAREVA 202 (213)
T ss_pred HHHcCCEEEEEeCCH--HHHHHhC
Confidence 443356677777654 3344444
No 215
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.59 E-value=1.4e-07 Score=85.69 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=85.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE--------------EeCchhHHH--HHHHHHHH---HHhCCcc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG--------------VTQPRRVAA--VSVARRVA---QELGVRL 77 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~--------------~~~p~~~l~--~~~~~~~~---~~~~~~~ 77 (466)
+.+|+.+.|.||+||||||++..+++...+..|...+ ++.+..... ..+.+.+. ...+...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~ 102 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPD 102 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCH
Confidence 5689999999999999999999999987655543221 111110000 01111111 1111000
Q ss_pred CCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 78 GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 78 ~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
...........-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+......+..+++.|
T Consensus 103 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~L~~~~~~~~tiii~s 181 (223)
T TIGR03740 103 SRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT-NGLDPIGIQELRELIRSFPEQGITVILSS 181 (223)
T ss_pred HHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 00000000000000112234458999999999988899999999999998 78888887776665555443355677766
Q ss_pred cccChhHHHhhc
Q 012322 158 ATLDGEKVSKFF 169 (466)
Q Consensus 158 AT~~~~~~~~~~ 169 (466)
+-+ +.+.++.
T Consensus 182 H~~--~~~~~~~ 191 (223)
T TIGR03740 182 HIL--SEVQQLA 191 (223)
T ss_pred CCH--HHHHHhc
Confidence 643 3344444
No 216
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.59 E-value=8.2e-08 Score=88.54 Aligned_cols=145 Identities=19% Similarity=0.194 Sum_probs=85.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH----HHHHHHHH---HHHhC----CccCCeeeee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA----AVSVARRV---AQELG----VRLGEEVGYA 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l----~~~~~~~~---~~~~~----~~~~~~~g~~ 84 (466)
.+.+|+.+.|+||+||||||++..+++...+..|...+...+.... .....+.+ .+... ..+...+...
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 103 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHG 103 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhc
Confidence 3578999999999999999999999998776666543332221100 00001111 00000 0000000000
Q ss_pred ---------------Eeecc------------ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHH
Q 012322 85 ---------------IRFED------------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILL 137 (466)
Q Consensus 85 ---------------~~~~~------------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~ 137 (466)
..... ....+..+.-.|.|+.++..+....+.+++++++||+- ..+|.....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~ 182 (243)
T TIGR02315 104 RLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI-ASLDPKTSK 182 (243)
T ss_pred ccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHH
Confidence 00000 00012344568999999999999999999999999998 788888776
Q ss_pred HHHHHHHHhhhc-CceEEEEecccC
Q 012322 138 GLVKRLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 138 ~~l~~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.+.+.+.+.... +..+|+.|+.++
T Consensus 183 ~l~~~l~~~~~~~~~tiii~tH~~~ 207 (243)
T TIGR02315 183 QVMDYLKRINKEDGITVIINLHQVD 207 (243)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 655555544332 466777777553
No 217
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=5.5e-08 Score=89.17 Aligned_cols=145 Identities=20% Similarity=0.210 Sum_probs=85.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-H---HHHHHHH---HHHhC----CccCCeeeee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-A---VSVARRV---AQELG----VRLGEEVGYA 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~---~~~~~~~---~~~~~----~~~~~~~g~~ 84 (466)
.+.+|+.+.|+||+||||||++..+.+...+..|...+...+.... . ....+.+ .+... .++...+.+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 101 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP 101 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHH
Confidence 3678999999999999999999999998776655433322221000 0 0000000 00000 0000000000
Q ss_pred ------Ee--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 85 ------IR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 85 ------~~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
.. ..-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~ 180 (235)
T cd03261 102 LREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT-AGLDPIASGVIDDLIR 180 (235)
T ss_pred HhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHH
Confidence 00 00000012334458999999999999999999999999998 7888888777656555
Q ss_pred Hhhhc-CceEEEEecccC
Q 012322 145 NLRAS-KLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~-~~~ii~~SAT~~ 161 (466)
+.... +..+|+.|+-++
T Consensus 181 ~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 181 SLKKELGLTSIMVTHDLD 198 (235)
T ss_pred HHHHhcCcEEEEEecCHH
Confidence 54432 567788777543
No 218
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=7.2e-08 Score=87.45 Aligned_cols=145 Identities=16% Similarity=0.160 Sum_probs=84.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-------------------HHHHHH---HHh
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-------------------VARRVA---QEL 73 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-------------------~~~~~~---~~~ 73 (466)
.+.+|+.+.|.||+||||||++..+.+...+..|...+...+......+ +.+.+. ...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 101 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY 101 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc
Confidence 3568999999999999999999999998766555432211110000000 000010 000
Q ss_pred CCccCC---eee-eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc
Q 012322 74 GVRLGE---EVG-YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (466)
Q Consensus 74 ~~~~~~---~~g-~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~ 149 (466)
+..... .+. +...+.-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+......
T Consensus 102 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~ 180 (220)
T cd03265 102 GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT-IGLDPQTRAHVWEYIEKLKEE 180 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-cCCCHHHHHHHHHHHHHHHHh
Confidence 000000 000 000000000112344558999999999999999999999999998 788888877766666555443
Q ss_pred -CceEEEEecccC
Q 012322 150 -KLKILITSATLD 161 (466)
Q Consensus 150 -~~~ii~~SAT~~ 161 (466)
+..+|+.|+.++
T Consensus 181 ~~~tvi~~tH~~~ 193 (220)
T cd03265 181 FGMTILLTTHYME 193 (220)
T ss_pred cCCEEEEEeCCHH
Confidence 556777777543
No 219
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=1e-07 Score=87.84 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=85.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH----HHHHHHHH---HHHhC----CccCCee---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA----AVSVARRV---AQELG----VRLGEEV--- 81 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l----~~~~~~~~---~~~~~----~~~~~~~--- 81 (466)
.+.+|+.+.|+||+||||||++..+++...+..|...+...+.... .....+.+ .+... ..+....
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 102 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSG 102 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhh
Confidence 4678999999999999999999999998766555443322221100 00000000 00000 0000000
Q ss_pred ------------eeeEee------------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHH
Q 012322 82 ------------GYAIRF------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILL 137 (466)
Q Consensus 82 ------------g~~~~~------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~ 137 (466)
+..... .-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|.....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~ 181 (241)
T cd03256 103 RLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV-ASLDPASSR 181 (241)
T ss_pred hcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHH
Confidence 000000 0000112344558999999999999899999999999998 788888877
Q ss_pred HHHHHHHHhhhc-CceEEEEecccC
Q 012322 138 GLVKRLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 138 ~~l~~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.+.+.+...... +..+|+.|+.++
T Consensus 182 ~l~~~l~~~~~~~~~tii~~tH~~~ 206 (241)
T cd03256 182 QVMDLLKRINREEGITVIVSLHQVD 206 (241)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 766666554432 566777777553
No 220
>PRK10908 cell division protein FtsE; Provisional
Probab=98.57 E-value=2.6e-07 Score=83.96 Aligned_cols=145 Identities=14% Similarity=0.177 Sum_probs=84.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HH---HHHHHH---HHHh----CCccCCeeeee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AV---SVARRV---AQEL----GVRLGEEVGYA 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~---~~~~~~---~~~~----~~~~~~~~g~~ 84 (466)
.+.+|+.+.|.||+||||||++..+.+...+..|...+...+.... .. ...+.+ .+.. ...+.....+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 103 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIP 103 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhH
Confidence 3568999999999999999999999998776655433322211100 00 000000 0000 00000000000
Q ss_pred -----Ee--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 85 -----IR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 85 -----~~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
.. ..-....+..+.-.+.|+.++..+....+.+++++++||+- ..+|......+.+.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~ 182 (222)
T PRK10908 104 LIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT-GNLDDALSEGILRLFEE 182 (222)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCC-CcCCHHHHHHHHHHHHH
Confidence 00 00000012344558899999999988889999999999998 78888877666555555
Q ss_pred hhhcCceEEEEecccC
Q 012322 146 LRASKLKILITSATLD 161 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~ 161 (466)
....+..+++.|+.++
T Consensus 183 ~~~~~~tiii~sH~~~ 198 (222)
T PRK10908 183 FNRVGVTVLMATHDIG 198 (222)
T ss_pred HHHCCCEEEEEeCCHH
Confidence 4433567778777653
No 221
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.57 E-value=5e-07 Score=80.54 Aligned_cols=141 Identities=21% Similarity=0.183 Sum_probs=83.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhc--CcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee-eEeeccccC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH--GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY-AIRFEDRTS 92 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~--~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ 92 (466)
.+..|+.+.|.|++||||||++..+.+.. .+..|...+...+......+. +.....+.-.....-+ ........
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~--~~~~~i~~v~q~~~~~~~~~~~~~l- 98 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE--RARLGIFLAFQYPPEIPGVKNADFL- 98 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHH--HhhCcEEEeecChhhccCccHHHHH-
Confidence 45789999999999999999999999873 344554444343322111110 0000000000000000 00000000
Q ss_pred ccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 93 ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 93 ~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.....-.|.|+.++..+....+.+++++++||+- ..+|......+++.+.+....+..+|+.|+.++
T Consensus 99 -~~~~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~ 165 (200)
T cd03217 99 -RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPD-SGLDIDALRLVAEVINKLREEGKSVLIITHYQR 165 (200)
T ss_pred -hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 0111248999999999999999999999999998 788888777766666554433556777666543
No 222
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.57 E-value=2.7e-08 Score=94.19 Aligned_cols=143 Identities=18% Similarity=0.244 Sum_probs=90.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEE------eCchhHHHHHHHHHHHHHhCCccCCeeeeeEeecc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV------TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED 89 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~------~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 89 (466)
.+.+|+.+.+.||+||||||++.++.+...+++|...+. ++|.+--..-+++..+-.-..++..+++|..+...
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~ 106 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK 106 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC
Confidence 467899999999999999999999999998877654332 33432222222222222222333344444333111
Q ss_pred ccC--------------------ccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-
Q 012322 90 RTS--------------------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA- 148 (466)
Q Consensus 90 ~~~--------------------~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~- 148 (466)
... .+....-++.|+.+|..+++.+..+++++.+||.- ..+|......+-..+.+...
T Consensus 107 ~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl-SaLD~kLR~~mr~Elk~lq~~ 185 (352)
T COG3842 107 KLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL-SALDAKLREQMRKELKELQRE 185 (352)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc-cchhHHHHHHHHHHHHHHHHh
Confidence 000 11222337999999999999999999999999987 67787775554444443332
Q ss_pred cCceEEEEecc
Q 012322 149 SKLKILITSAT 159 (466)
Q Consensus 149 ~~~~ii~~SAT 159 (466)
.+..+|.+|+.
T Consensus 186 ~giT~i~VTHD 196 (352)
T COG3842 186 LGITFVYVTHD 196 (352)
T ss_pred cCCeEEEEECC
Confidence 25667776664
No 223
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.57 E-value=9.6e-08 Score=88.21 Aligned_cols=150 Identities=21% Similarity=0.276 Sum_probs=86.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcE-------EEEeCchhHHHHHHHHHHHHHhCCccCCe---eeeeE-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-------IGVTQPRRVAAVSVARRVAQELGVRLGEE---VGYAI- 85 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~-------i~~~~p~~~l~~~~~~~~~~~~~~~~~~~---~g~~~- 85 (466)
+..|+.+.|.||+||||||++..+.+...+..|.. +.++.....+.......+........... +....
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 106 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALK 106 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHH
Confidence 56899999999999999999999999876655422 22221110000000000111100000000 00000
Q ss_pred eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-CceEEEEecccChhH
Q 012322 86 RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEK 164 (466)
Q Consensus 86 ~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SAT~~~~~ 164 (466)
...-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+.... +..+|+.|+.++ .
T Consensus 107 ~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~--~ 183 (251)
T PRK09544 107 RVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT-QGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH--L 183 (251)
T ss_pred HcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--H
Confidence 000000112345568999999999988889999999999998 788888877765555544432 466777777543 3
Q ss_pred HHhhc
Q 012322 165 VSKFF 169 (466)
Q Consensus 165 ~~~~~ 169 (466)
+.++.
T Consensus 184 i~~~~ 188 (251)
T PRK09544 184 VMAKT 188 (251)
T ss_pred HHHhC
Confidence 44444
No 224
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.57 E-value=8.8e-07 Score=80.44 Aligned_cols=144 Identities=23% Similarity=0.221 Sum_probs=84.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-------------HHH----HHHHHHHHHHh----CC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-------------VAA----VSVARRVAQEL----GV 75 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-------------~l~----~~~~~~~~~~~----~~ 75 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+.. ... ..+.+.+.... +.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 82 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGW 82 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccccc
Confidence 6789999999999999999999999987665553322221110 000 00111110000 00
Q ss_pred ccCCe------eeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 76 RLGEE------VGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 76 ~~~~~------~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
..... +.... ...-....+..+.-+|.|+.++..+....+.+++++|+||+- ..+|......+.+.+.....
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~ 161 (223)
T TIGR03771 83 LRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPF-TGLDMPTQELLTELFIELAG 161 (223)
T ss_pred ccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 00000 00000 000000112334458999999999999999999999999998 78888887776666655443
Q ss_pred cCceEEEEecccC
Q 012322 149 SKLKILITSATLD 161 (466)
Q Consensus 149 ~~~~ii~~SAT~~ 161 (466)
.+..+|+.|+-++
T Consensus 162 ~~~tvii~sH~~~ 174 (223)
T TIGR03771 162 AGTAILMTTHDLA 174 (223)
T ss_pred cCCEEEEEeCCHH
Confidence 3567788777543
No 225
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.57 E-value=9.3e-08 Score=86.61 Aligned_cols=143 Identities=16% Similarity=0.133 Sum_probs=83.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH---HHHhCCccCCeeeeeE--------
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEVGYAI-------- 85 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~---~~~~~~~~~~~~g~~~-------- 85 (466)
+..|+.+.|.|++||||||++..+.+...+..|...+...+......+..+.+ .+.........+....
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 107 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG 107 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999999877665543332222110000000000 0000000000000000
Q ss_pred -e--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 86 -R--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 86 -~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
. +.-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+......+
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~~ 186 (218)
T cd03266 108 LKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPT-TGLDVMATRALREFIRQLRALG 186 (218)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC-cCCCHHHHHHHHHHHHHHHHCC
Confidence 0 00000012234458899999999988899999999999998 7888888777666555544335
Q ss_pred ceEEEEeccc
Q 012322 151 LKILITSATL 160 (466)
Q Consensus 151 ~~ii~~SAT~ 160 (466)
..+|+.|+.+
T Consensus 187 ~tii~~tH~~ 196 (218)
T cd03266 187 KCILFSTHIM 196 (218)
T ss_pred CEEEEEeCCH
Confidence 6777777654
No 226
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5.3e-07 Score=89.24 Aligned_cols=143 Identities=22% Similarity=0.282 Sum_probs=92.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHH-HHHHHHHhCCcc---CCeeeeeEeec---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSV-ARRVAQELGVRL---GEEVGYAIRFE--- 88 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~-~~~~~~~~~~~~---~~~~g~~~~~~--- 88 (466)
.+..|+.+.++|++||||||++..+++....+.|...+...+.+.+..+. .+.+. ..+.+. ..++..+..+.
T Consensus 343 t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~-~v~Q~p~lf~gTireNi~l~~~~ 421 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS-WVSQNPYLFAGTIRENILLARPD 421 (559)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee-eeCCCCccccccHHHHhhccCCc
Confidence 46789999999999999999999999999887887777766665554322 22211 000000 00000000000
Q ss_pred ----------------ccc--Cc--cceEEE----cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 89 ----------------DRT--SE--RTLIKY----LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 89 ----------------~~~--~~--~~~i~~----~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
+.. .. ++.|-- .|.|+.+|..+++..+.+.+++++||+- .++|.+.-..+++.+.
T Consensus 422 ~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpT-A~LD~etE~~i~~~l~ 500 (559)
T COG4988 422 ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPT-AHLDAETEQIILQALQ 500 (559)
T ss_pred CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCc-cCCCHhHHHHHHHHHH
Confidence 000 01 111222 7999999999999999999999999977 5688877666666666
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
+..+ +..+++.|+-+.
T Consensus 501 ~l~~-~ktvl~itHrl~ 516 (559)
T COG4988 501 ELAK-QKTVLVITHRLE 516 (559)
T ss_pred HHHh-CCeEEEEEcChH
Confidence 6655 667777777653
No 227
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.56 E-value=2.7e-07 Score=83.27 Aligned_cols=143 Identities=20% Similarity=0.153 Sum_probs=83.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh---------------HHH--HHHHHHHH---HHhCCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR---------------VAA--VSVARRVA---QELGVR 76 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~---------------~l~--~~~~~~~~---~~~~~~ 76 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+-..+.. ... ....+.+. ...+..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~ 113 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR 113 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCc
Confidence 5689999999999999999999999987665553222111100 000 00111110 000000
Q ss_pred cCCeee-eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 77 LGEEVG-YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 77 ~~~~~g-~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
...... ......-....+..+.-.+.|+.++..+....+.+++++++||+- ..+|......+.+.+......+..+|+
T Consensus 114 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii 192 (214)
T PRK13543 114 AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY-ANLDLEGITLVNRMISAHLRGGGAALV 192 (214)
T ss_pred HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 000000 000000000123445568999999999998899999999999998 788888777655555444443566777
Q ss_pred Eeccc
Q 012322 156 TSATL 160 (466)
Q Consensus 156 ~SAT~ 160 (466)
.|+.+
T Consensus 193 ~sH~~ 197 (214)
T PRK13543 193 TTHGA 197 (214)
T ss_pred EecCh
Confidence 77754
No 228
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.56 E-value=1.6e-07 Score=84.60 Aligned_cols=143 Identities=23% Similarity=0.249 Sum_probs=85.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHHHH---HH-----hCCccCCee------
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---QE-----LGVRLGEEV------ 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~~~---~~-----~~~~~~~~~------ 81 (466)
+.+|+.+.|.||+||||||++..+++...+..|...+...+.... .....+.++ +. ....+....
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~ 103 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLEN 103 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHH
Confidence 568999999999999999999999998766655433322111000 000000000 00 000000000
Q ss_pred -eeeE------------eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 82 -GYAI------------RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 82 -g~~~------------~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
+... .+.-....+..+.-.|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+...
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~ 182 (211)
T cd03225 104 LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT-AGLDPAGRRELLELLKKLKA 182 (211)
T ss_pred cCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 0000 000000112344568999999999999999999999999998 78898887776666655544
Q ss_pred cCceEEEEeccc
Q 012322 149 SKLKILITSATL 160 (466)
Q Consensus 149 ~~~~ii~~SAT~ 160 (466)
.+..+|+.|+.+
T Consensus 183 ~~~tvi~~sH~~ 194 (211)
T cd03225 183 EGKTIIIVTHDL 194 (211)
T ss_pred cCCEEEEEeCCH
Confidence 356777777754
No 229
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.56 E-value=1.3e-06 Score=83.39 Aligned_cols=129 Identities=28% Similarity=0.327 Sum_probs=89.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC-cCC-CcEEEEeC-chhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHG-YTK-SGIIGVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~-~~~-~~~i~~~~-p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (466)
+++++.++||||.||||.+.-++.... ..+ ....+++. -.|..|.++.+.+++.+++.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 378999999999999955554444443 222 33444444 368889898899999887653
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhcC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS 170 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~~ 170 (466)
.++.++..+...+. .+.+.++|.||=+. ++.......+-++.+......-...+.+|||...+++.+.+.
T Consensus 264 -~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 -EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred -EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 23456777766654 45678999999999 665555555557777776654566788999998777666553
No 230
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.56 E-value=5.9e-07 Score=81.01 Aligned_cols=145 Identities=22% Similarity=0.241 Sum_probs=85.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-----------------HHHHHHHHHHhCCccC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-----------------VSVARRVAQELGVRLG 78 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-----------------~~~~~~~~~~~~~~~~ 78 (466)
.+.+|+.+.|+||+||||||++..+.+...+..|...+-..+..... ..+.+.+.........
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~ 100 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKG 100 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccc
Confidence 46789999999999999999999999987666554333222111000 0011111000000000
Q ss_pred ---Ceeeee-Eee-------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 79 ---EEVGYA-IRF-------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 79 ---~~~g~~-~~~-------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
...... ... .-....+..+.-.|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~ 179 (213)
T cd03235 101 LFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF-AGVDPKTQEDIYELLRELR 179 (213)
T ss_pred cccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHH
Confidence 000000 000 0000012334558999999999988889999999999998 7899888777666665544
Q ss_pred hcCceEEEEecccC
Q 012322 148 ASKLKILITSATLD 161 (466)
Q Consensus 148 ~~~~~ii~~SAT~~ 161 (466)
..+..+|+.|+.++
T Consensus 180 ~~~~tvi~~sH~~~ 193 (213)
T cd03235 180 REGMTILVVTHDLG 193 (213)
T ss_pred hcCCEEEEEeCCHH
Confidence 33567778777553
No 231
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.55 E-value=9.9e-08 Score=90.84 Aligned_cols=150 Identities=19% Similarity=0.236 Sum_probs=88.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-------------------HHHHH---HHHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-------------------VARRV---AQELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-------------------~~~~~---~~~~~ 74 (466)
+..|+.+.+.||+||||||++..+++...+..|...+...+....... +.+.+ ....+
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 106 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG 106 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC
Confidence 578999999999999999999999998766555433322211000000 00001 00000
Q ss_pred CccCC---ee-eeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 75 VRLGE---EV-GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 75 ~~~~~---~~-g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
..... .+ .......-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+.+....+
T Consensus 107 ~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~~g 185 (303)
T TIGR01288 107 MSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPT-TGLDPHARHLIWERLRSLLARG 185 (303)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCC
Confidence 00000 00 0000000000113344568999999999999999999999999998 7889888777666665544435
Q ss_pred ceEEEEecccChhHHHhhc
Q 012322 151 LKILITSATLDGEKVSKFF 169 (466)
Q Consensus 151 ~~ii~~SAT~~~~~~~~~~ 169 (466)
..+++.|+-++ .+.++.
T Consensus 186 ~til~~sH~~~--~~~~~~ 202 (303)
T TIGR01288 186 KTILLTTHFME--EAERLC 202 (303)
T ss_pred CEEEEECCCHH--HHHHhC
Confidence 67777777543 344443
No 232
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.55 E-value=7.4e-08 Score=88.16 Aligned_cols=151 Identities=18% Similarity=0.198 Sum_probs=87.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-----HHHH----------------HHHHHHH---H
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-----VAAV----------------SVARRVA---Q 71 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-----~l~~----------------~~~~~~~---~ 71 (466)
.+..|+.+.|.||+||||||++..+.+...+..|...+...+.. .... .+.+.+. .
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 101 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLE 101 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHH
Confidence 35789999999999999999999999987665554322211110 0000 0011110 0
Q ss_pred HhCCccCC---ee-eeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 72 ELGVRLGE---EV-GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 72 ~~~~~~~~---~~-g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
..+..... .+ .......-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+....
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~ 180 (232)
T cd03218 102 IRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPF-AGVDPIAVQDIQKIIKILK 180 (232)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHH
Confidence 00000000 00 0000000000112344558999999999999899999999999998 7888888777555554444
Q ss_pred hcCceEEEEecccChhHHHhhc
Q 012322 148 ASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 148 ~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
..+..+|+.|+.++ .+..+.
T Consensus 181 ~~~~tii~~sH~~~--~~~~~~ 200 (232)
T cd03218 181 DRGIGVLITDHNVR--ETLSIT 200 (232)
T ss_pred HCCCEEEEEeCCHH--HHHHhC
Confidence 33566777777543 344444
No 233
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.55 E-value=3.1e-07 Score=82.92 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=82.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH----HHHHHHHH---HHHhC----CccCCeeee--
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA----AVSVARRV---AQELG----VRLGEEVGY-- 83 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l----~~~~~~~~---~~~~~----~~~~~~~g~-- 83 (466)
+.+|+.+.|+||+||||||++..+.+...+..|...+-..+.... .....+.+ .+... ..+.....+
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~ 103 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFAL 103 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHH
Confidence 568999999999999999999999998766555433322111000 00000000 00000 000000000
Q ss_pred ---eEe--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 84 ---AIR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 84 ---~~~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
... ..-....+....-.+.|+.++..+....+.+++++++||+- ..+|......+.+.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~ 182 (214)
T cd03292 104 EVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPT-GNLDPDTTWEIMNLLKKI 182 (214)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHH
Confidence 000 00000012234458899999999988899999999999998 788888877766666554
Q ss_pred hhcCceEEEEeccc
Q 012322 147 RASKLKILITSATL 160 (466)
Q Consensus 147 ~~~~~~ii~~SAT~ 160 (466)
...+..+|+.|+.+
T Consensus 183 ~~~~~tiiivtH~~ 196 (214)
T cd03292 183 NKAGTTVVVATHAK 196 (214)
T ss_pred HHcCCEEEEEeCCH
Confidence 33356677766654
No 234
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=1.5e-07 Score=85.43 Aligned_cols=151 Identities=22% Similarity=0.247 Sum_probs=86.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEE-------------EEeCchhHHH--HHHHHHHH---HHhCCcc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-------------GVTQPRRVAA--VSVARRVA---QELGVRL 77 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i-------------~~~~p~~~l~--~~~~~~~~---~~~~~~~ 77 (466)
.+.+|+.+.|.||+||||||++..+++...+..|... .++.....+. ..+.+.+. ...+...
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 105 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPK 105 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCH
Confidence 3568999999999999999999999988765544321 1111110000 00111110 1001000
Q ss_pred CC---eee-eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCce
Q 012322 78 GE---EVG-YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLK 152 (466)
Q Consensus 78 ~~---~~g-~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ 152 (466)
.. .+. ....+.-....+....-+|.|+.++..+....+.+++++++||+. ..+|......+.+.+.+... .+..
T Consensus 106 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~~~~~~~~t 184 (220)
T cd03293 106 AEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF-SALDALTREQLQEELLDIWRETGKT 184 (220)
T ss_pred HHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC-CCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 00 000 000000000112334558999999999999999999999999998 78998887776666655433 2566
Q ss_pred EEEEecccChhHHHhhc
Q 012322 153 ILITSATLDGEKVSKFF 169 (466)
Q Consensus 153 ii~~SAT~~~~~~~~~~ 169 (466)
+|+.|+.++ .+.++.
T Consensus 185 iii~sH~~~--~~~~~~ 199 (220)
T cd03293 185 VLLVTHDID--EAVFLA 199 (220)
T ss_pred EEEEecCHH--HHHHhC
Confidence 777777543 344444
No 235
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.55 E-value=7.8e-08 Score=87.39 Aligned_cols=144 Identities=20% Similarity=0.258 Sum_probs=84.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHH-HH---HHHhCC----ccCCee-----
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVAR-RV---AQELGV----RLGEEV----- 81 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~-~~---~~~~~~----~~~~~~----- 81 (466)
.+..|+.+.|+||+||||||++..+.+...+..|...+...+.... ..+..+ .+ .+.... .+...+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAY 101 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhh
Confidence 3578999999999999999999999988766555433322111000 000000 00 000000 000000
Q ss_pred --eee---------E-eecc-ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 82 --GYA---------I-RFED-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 82 --g~~---------~-~~~~-~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
+.. . .... ....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+.+...
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~ 180 (222)
T cd03224 102 ARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS-EGLAPKIVEEIFEAIRELRD 180 (222)
T ss_pred hcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 000 0 0000 00112334458899999999988899999999999998 78888887776666655443
Q ss_pred cCceEEEEeccc
Q 012322 149 SKLKILITSATL 160 (466)
Q Consensus 149 ~~~~ii~~SAT~ 160 (466)
.+..+|+.|+.+
T Consensus 181 ~~~tiii~sH~~ 192 (222)
T cd03224 181 EGVTILLVEQNA 192 (222)
T ss_pred CCCEEEEEeCCH
Confidence 356777777754
No 236
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.54 E-value=4.2e-06 Score=88.31 Aligned_cols=117 Identities=21% Similarity=0.327 Sum_probs=87.4
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCC-cceEE-EEecccccccccC
Q 012322 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRRFI-VSTNIAETSLTVD 290 (466)
Q Consensus 213 ~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g-~~~il-vaT~~~~~Gidip 290 (466)
.+++||||.=+....-+.+-|-+... +.+.-.-+-|..++.+|.++.++|.++ .++|+ ++|-+.+-|+|+-
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~m-------psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLT 1412 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYM-------PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLT 1412 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhc-------CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccC
Confidence 35899999999988888877655421 345556789999999999999999988 77875 6888999999999
Q ss_pred CeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchhh
Q 012322 291 GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (466)
Q Consensus 291 ~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (466)
+.+.||... -.|| |..--+++-||-|.|-.+-=-+|||.++...++
T Consensus 1413 GADTVVFvE----HDWN-----------PMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1413 GADTVVFVE----HDWN-----------PMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred CCceEEEEe----cCCC-----------chhhHHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 999998521 1112 222335556666666666667899998887655
No 237
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.54 E-value=9.8e-08 Score=99.79 Aligned_cols=142 Identities=19% Similarity=0.188 Sum_probs=87.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-HHHHHHH---HH---hCCccCCeeeee---Ee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QE---LGVRLGEEVGYA---IR 86 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-~~~~~~~---~~---~~~~~~~~~g~~---~~ 86 (466)
+.+|+.+.|+||+||||||++..+++.. +..|...+...+.+.... +..+.++ +. ++-++.++..+. ..
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~ 451 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDAS 451 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCC
Confidence 4689999999999999999999999988 655554443333322111 1111110 00 000000000000 00
Q ss_pred e------------c---cccCc--cceE----EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 87 F------------E---DRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 87 ~------------~---~~~~~--~~~i----~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
. + ...+. ++.+ .-.|.|+.+|..+++..+++.+++|+||+- ..+|.+....+.+.+.+
T Consensus 452 ~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~T-SaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 452 DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT-ASLDAHSEQLVMQALNA 530 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHH
Confidence 0 0 00000 1111 228999999999999999999999999998 78999888777766655
Q ss_pred hhhcCceEEEEecccC
Q 012322 146 LRASKLKILITSATLD 161 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~ 161 (466)
..+ +..+|+.|+-+.
T Consensus 531 ~~~-~~TvIiItHrl~ 545 (588)
T PRK11174 531 ASR-RQTTLMVTHQLE 545 (588)
T ss_pred HhC-CCEEEEEecChH
Confidence 544 778888888763
No 238
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.53 E-value=1.5e-07 Score=85.37 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=86.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-------------------HHHHHH---HHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-------------------VARRVA---QELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-------------------~~~~~~---~~~~ 74 (466)
+.+|+.+.|+||+||||||++..+.+...+..|...+...+....... +.+.+. ...+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 104 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG 104 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC
Confidence 578999999999999999999999998766555433322221000000 000000 0000
Q ss_pred CccCC---eee-eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 75 VRLGE---EVG-YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 75 ~~~~~---~~g-~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
..... .+. ......-....+..+.-.|.|+.++..+....+.+++++++||+- ..+|......+++.+..... +
T Consensus 105 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~ 182 (220)
T cd03263 105 LPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT-SGLDPASRRAIWDLILEVRK-G 182 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCC-CCCCHHHHHHHHHHHHHHhc-C
Confidence 00000 000 000000000012334458999999999999899999999999998 78888887776665655544 5
Q ss_pred ceEEEEecccChhHHHhhc
Q 012322 151 LKILITSATLDGEKVSKFF 169 (466)
Q Consensus 151 ~~ii~~SAT~~~~~~~~~~ 169 (466)
..+|+.|+-+ +.+.++.
T Consensus 183 ~tii~~sH~~--~~~~~~~ 199 (220)
T cd03263 183 RSIILTTHSM--DEAEALC 199 (220)
T ss_pred CEEEEEcCCH--HHHHHhc
Confidence 5666666644 3344444
No 239
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.53 E-value=1.4e-07 Score=89.75 Aligned_cols=143 Identities=20% Similarity=0.244 Sum_probs=85.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHH----------------------HHHHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR----------------------VAQELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~----------------------~~~~~~ 74 (466)
+.+|+.+.+.||+|+||||++..+++...++.|...+...+.........+. .+...+
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~ 104 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG 104 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 5689999999999999999999999987776654333222211000000000 011111
Q ss_pred CccC---CeeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 75 VRLG---EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 75 ~~~~---~~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
.... ..+.... .+.-....+..+.-+|.|+.++..+....+.+++++++||+. ..+|......+.+.+..... +
T Consensus 105 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt-~gLD~~~~~~l~~~l~~~~~-~ 182 (301)
T TIGR03522 105 MKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT-TGLDPNQLVEIRNVIKNIGK-D 182 (301)
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHhcC-C
Confidence 0000 0000000 000000123445568999999999999999999999999998 78998887776665555443 5
Q ss_pred ceEEEEecccC
Q 012322 151 LKILITSATLD 161 (466)
Q Consensus 151 ~~ii~~SAT~~ 161 (466)
..+++.|+-++
T Consensus 183 ~tiii~sH~l~ 193 (301)
T TIGR03522 183 KTIILSTHIMQ 193 (301)
T ss_pred CEEEEEcCCHH
Confidence 66777676553
No 240
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.53 E-value=1.2e-07 Score=87.08 Aligned_cols=144 Identities=21% Similarity=0.239 Sum_probs=85.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-------------------HHHHHHHH---HHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-------------------VSVARRVA---QELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-------------------~~~~~~~~---~~~~ 74 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+...+..... ..+.+.+. ...+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 103 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG 103 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcC
Confidence 5789999999999999999999999887665553322111110000 00011110 0000
Q ss_pred CccC---Ceee-eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-c
Q 012322 75 VRLG---EEVG-YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-S 149 (466)
Q Consensus 75 ~~~~---~~~g-~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~ 149 (466)
.... ..+. ....+.-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+... .
T Consensus 104 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~ 182 (236)
T TIGR03864 104 LSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT-VGLDPASRAAIVAHVRALCRDQ 182 (236)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-cCCCHHHHHHHHHHHHHHHHhC
Confidence 0000 0000 000000000112344568999999999999999999999999998 78998887776666655442 2
Q ss_pred CceEEEEecccC
Q 012322 150 KLKILITSATLD 161 (466)
Q Consensus 150 ~~~ii~~SAT~~ 161 (466)
+..+|+.|+.++
T Consensus 183 ~~tiii~sH~~~ 194 (236)
T TIGR03864 183 GLSVLWATHLVD 194 (236)
T ss_pred CCEEEEEecChh
Confidence 567788777654
No 241
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.53 E-value=9.6e-08 Score=87.87 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=84.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH---HHHHHHHHH---HHHhC----CccCCeeeee--
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV---AAVSVARRV---AQELG----VRLGEEVGYA-- 84 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~---l~~~~~~~~---~~~~~----~~~~~~~g~~-- 84 (466)
+..|+.+.|.||+||||||++..+++...+..|...+...+... ......+.+ .+... ..+.....+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 103 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL 103 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHH
Confidence 56899999999999999999999999876655543332222110 000000000 00000 0000000000
Q ss_pred ----Ee--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 85 ----IR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 85 ----~~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
.. ..-....+..+.-.+.|+.++..+....+.+++++++||+. ..+|......+.+.+...
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~ 182 (240)
T PRK09493 104 RVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPT-SALDPELRHEVLKVMQDL 182 (240)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHH
Confidence 00 00000012334457899999999988899999999999998 788888877766655544
Q ss_pred hhcCceEEEEecccC
Q 012322 147 RASKLKILITSATLD 161 (466)
Q Consensus 147 ~~~~~~ii~~SAT~~ 161 (466)
...+..+|+.|+.++
T Consensus 183 ~~~~~tiii~sH~~~ 197 (240)
T PRK09493 183 AEEGMTMVIVTHEIG 197 (240)
T ss_pred HHcCCEEEEEeCCHH
Confidence 433567777777553
No 242
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.52 E-value=4.4e-07 Score=82.35 Aligned_cols=145 Identities=17% Similarity=0.175 Sum_probs=85.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HH---HH-HHH---HHHhC----CccCCeeee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VS---VA-RRV---AQELG----VRLGEEVGY 83 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~---~~-~~~---~~~~~----~~~~~~~g~ 83 (466)
.+..|+.+.|.||+||||||++..+++...+..|...+...+..... .+ .. +.+ .+... ..+......
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 106 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAM 106 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHH
Confidence 35689999999999999999999999987766554433222211100 00 00 000 00000 000000000
Q ss_pred -----eEe--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 84 -----AIR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 84 -----~~~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
... +.-....+....-++.|+.++..+....+.+++++++||+- ..+|......+.+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~ 185 (221)
T TIGR02211 107 PLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPT-GNLDNNNAKIIFDLML 185 (221)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcCCHHHHHHHHHHHH
Confidence 000 00000012334458999999999999999999999999998 7888888777666555
Q ss_pred Hhhhc-CceEEEEecccC
Q 012322 145 NLRAS-KLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~-~~~ii~~SAT~~ 161 (466)
..... +..+|+.|+.++
T Consensus 186 ~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 186 ELNRELNTSFLVVTHDLE 203 (221)
T ss_pred HHHHhcCCEEEEEeCCHH
Confidence 54432 567788777653
No 243
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.52 E-value=3.3e-07 Score=83.25 Aligned_cols=142 Identities=17% Similarity=0.122 Sum_probs=83.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe------------CchhHHHHHHHHHHHHHhCCccCC---ee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT------------QPRRVAAVSVARRVAQELGVRLGE---EV 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~------------~p~~~l~~~~~~~~~~~~~~~~~~---~~ 81 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+.. .|.. .+.+.........+..... ..
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~ 123 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL-TGRENIYLNGRLLGLSRKEIDEKI 123 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC-cHHHHHHHHHHHcCCCHHHHHHHH
Confidence 568999999999999999999999998766555322211 1110 1111111000101100000 00
Q ss_pred eeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 82 GYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 82 g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
.... ...-....+..+.-+|.|+.++..+....+.+++++|+||+- ..+|......+.+.+......+..+|+.|+.+
T Consensus 124 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~-~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~ 202 (224)
T cd03220 124 DEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVL-AVGDAAFQEKCQRRLRELLKQGKTVILVSHDP 202 (224)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 0000 000000112344568999999999988899999999999998 78888877766666555444346677777654
No 244
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.52 E-value=2.3e-07 Score=89.18 Aligned_cols=150 Identities=20% Similarity=0.215 Sum_probs=88.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHH---HHHH---HHHhCCccCCeeeeeEe---
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSV---ARRV---AQELGVRLGEEVGYAIR--- 86 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~---~~~~---~~~~~~~~~~~~g~~~~--- 86 (466)
+.+|+.+.|+||+||||||++..+.+...++.|...+...+...+. .+. .+.+ .+........++..++.
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~ 107 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL 107 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHH
Confidence 5789999999999999999999999988776655443332211110 000 0000 00000000000000000
Q ss_pred --------------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 87 --------------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 87 --------------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
..-....+....-+|.|+.++..+++.+..+++++++||+. ..+|......+++.+.+.
T Consensus 108 ~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPt-s~LD~~t~~~i~~lL~~l 186 (343)
T TIGR02314 108 ELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT-SALDPATTQSILELLKEI 186 (343)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHH
Confidence 00000012233458999999999999999999999999998 788888877765555554
Q ss_pred hhc-CceEEEEecccChhHHHhhc
Q 012322 147 RAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 147 ~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
... +..+|+.|+-++ .+.++.
T Consensus 187 ~~~~g~tiiliTH~~~--~v~~~~ 208 (343)
T TIGR02314 187 NRRLGLTILLITHEMD--VVKRIC 208 (343)
T ss_pred HHhcCCEEEEEeCCHH--HHHHhC
Confidence 432 567888777553 444544
No 245
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=1e-06 Score=79.51 Aligned_cols=144 Identities=21% Similarity=0.195 Sum_probs=83.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE----------------EeCchhHHH--HHHHHHHH---HHhC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG----------------VTQPRRVAA--VSVARRVA---QELG 74 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~----------------~~~p~~~l~--~~~~~~~~---~~~~ 74 (466)
.+.+|+.+.|+||+||||||++..+++...+..|...+ ++.....+. ..+.+.+. ...+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 101 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG 101 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC
Confidence 35789999999999999999999999877655443222 111100000 00111110 0000
Q ss_pred CccCC---eeee-eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-
Q 012322 75 VRLGE---EVGY-AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS- 149 (466)
Q Consensus 75 ~~~~~---~~g~-~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~- 149 (466)
..... .+.. ...+.-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+.+....
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~ 180 (213)
T cd03259 102 VPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL-SALDAKLREELREELKELQREL 180 (213)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHc
Confidence 00000 0000 00000000012334458999999999999999999999999998 788888877766666554432
Q ss_pred CceEEEEeccc
Q 012322 150 KLKILITSATL 160 (466)
Q Consensus 150 ~~~ii~~SAT~ 160 (466)
+..+|+.|+.+
T Consensus 181 ~~tii~~sH~~ 191 (213)
T cd03259 181 GITTIYVTHDQ 191 (213)
T ss_pred CCEEEEEecCH
Confidence 56677777754
No 246
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.52 E-value=1.3e-06 Score=77.00 Aligned_cols=128 Identities=27% Similarity=0.366 Sum_probs=79.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCcCCCcE-EEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceEEE
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGI-IGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~-i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ 99 (466)
+.++++||||+||||.+..+.......+... ++..-..|..+.++.+.+++.++..+... . ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~---------~-~~------ 65 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVA---------R-TE------ 65 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEES---------S-TT------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchh---------h-cc------
Confidence 4678999999999977666666554443333 33344578889999999999887543110 0 00
Q ss_pred cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHH
Q 012322 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKV 165 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~ 165 (466)
-.+..+.+.........++++|+||-+. ++.........++.+.........++.+|||...+.+
T Consensus 66 ~~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 66 SDPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp SCHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred hhhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 0133333222222123468999999998 5555444445577777766556788899999976553
No 247
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=5.3e-07 Score=82.62 Aligned_cols=143 Identities=21% Similarity=0.174 Sum_probs=85.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHH--------------HHHHhCCccCCe-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARR--------------VAQELGVRLGEE- 80 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~--------------~~~~~~~~~~~~- 80 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+...+.... .....+. +.+.........
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~ 104 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGAT 104 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCC
Confidence 568999999999999999999999998876666543322221100 0000010 001100000000
Q ss_pred eee-e-----Eeecc---------ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 81 VGY-A-----IRFED---------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 81 ~g~-~-----~~~~~---------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
... . ..... ....+..+.-.|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~ 183 (234)
T cd03251 105 REEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEAT-SALDTESERLVQAALER 183 (234)
T ss_pred HHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHH
Confidence 000 0 00000 00011234458999999999999999999999999998 78898887776666655
Q ss_pred hhhcCceEEEEecccC
Q 012322 146 LRASKLKILITSATLD 161 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~ 161 (466)
... +..+|+.|+.+.
T Consensus 184 ~~~-~~tii~~sh~~~ 198 (234)
T cd03251 184 LMK-NRTTFVIAHRLS 198 (234)
T ss_pred hcC-CCEEEEEecCHH
Confidence 543 667777777653
No 248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.51 E-value=4.9e-07 Score=82.34 Aligned_cols=144 Identities=18% Similarity=0.194 Sum_probs=85.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHH--------------HHHHHHhCCccC-C
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVA--------------RRVAQELGVRLG-E 79 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~--------------~~~~~~~~~~~~-~ 79 (466)
.+.+|+.+.|.||+||||||++..+.+...+..|...+...+.... ..... ..+.+....... .
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~ 115 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSC 115 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCC
Confidence 3578999999999999999999999998766555433322221100 00000 011111110000 0
Q ss_pred eeee-e-------E-----ee--ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 80 EVGY-A-------I-----RF--EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 80 ~~g~-~-------~-----~~--~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
.... . . .+ .-....+..+.-.+.|+.++..+....+.+++++++||+- ..+|......+.+.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~ 194 (226)
T cd03248 116 SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEAT-SALDAESEQQVQQALY 194 (226)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHH
Confidence 0000 0 0 00 0000112334558999999999999999999999999998 7888888777655555
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
.... +..+|+.|+.++
T Consensus 195 ~~~~-~~tii~~sh~~~ 210 (226)
T cd03248 195 DWPE-RRTVLVIAHRLS 210 (226)
T ss_pred HHcC-CCEEEEEECCHH
Confidence 5443 567777777653
No 249
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.51 E-value=3.4e-07 Score=82.59 Aligned_cols=145 Identities=21% Similarity=0.216 Sum_probs=84.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh----------------HHH--HHHHHHHHHHhCCcc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR----------------VAA--VSVARRVAQELGVRL 77 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~----------------~l~--~~~~~~~~~~~~~~~ 77 (466)
.+..|+.+.|.||+||||||++..+++...+..|...+-..+.. .+. ..+.+.+........
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~ 99 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL 99 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC
Confidence 35689999999999999999999999987665553322111100 000 001111100000000
Q ss_pred CC------eee-eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-
Q 012322 78 GE------EVG-YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS- 149 (466)
Q Consensus 78 ~~------~~g-~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~- 149 (466)
.. .+. ......-....+....-.+.|+.++..+....+.+++++++||+. ..+|......+.+.+.+....
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~ 178 (213)
T TIGR01277 100 KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF-SALDPLLREEMLALVKQLCSER 178 (213)
T ss_pred CccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhc
Confidence 00 000 000000000112334458999999999988889999999999999 788988877766666554432
Q ss_pred CceEEEEecccC
Q 012322 150 KLKILITSATLD 161 (466)
Q Consensus 150 ~~~ii~~SAT~~ 161 (466)
+..+|+.|+..+
T Consensus 179 ~~tii~vsh~~~ 190 (213)
T TIGR01277 179 QRTLLMVTHHLS 190 (213)
T ss_pred CCEEEEEeCCHH
Confidence 567777777543
No 250
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.50 E-value=3.2e-07 Score=84.22 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=50.1
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+......+..+|+.|+.++
T Consensus 140 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 204 (236)
T cd03219 140 PAGELSYGQQRRLEIARALATDPKLLLLDEPA-AGLNPEETEELAELIRELRERGITVLLVEHDMD 204 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 34458999999999988889999999999998 789988877766666554433567777777543
No 251
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.50 E-value=4e-07 Score=84.62 Aligned_cols=143 Identities=16% Similarity=0.103 Sum_probs=83.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe------CchhHH-HHHHHHHHH---HHhCCccCCeee---e
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT------QPRRVA-AVSVARRVA---QELGVRLGEEVG---Y 83 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~------~p~~~l-~~~~~~~~~---~~~~~~~~~~~g---~ 83 (466)
+..|+.+.|.||+||||||++..+++...+..|...+.. +..... ...+.+.+. ...+........ .
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 126 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPK 126 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 568999999999999999999999998776655422111 000000 000111111 000110000000 0
Q ss_pred eE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 84 AI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 84 ~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
.. ...-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+......+..+|+.|+.+
T Consensus 127 ~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt-~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~ 203 (264)
T PRK13546 127 IIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAL-SVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL 203 (264)
T ss_pred HHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 00 000001112345568999999999988899999999999998 78888876665555554443356777877754
No 252
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.50 E-value=5e-07 Score=82.42 Aligned_cols=144 Identities=22% Similarity=0.211 Sum_probs=83.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHH----HHHH---HHHhCC----ccCCeeee-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSV----ARRV---AQELGV----RLGEEVGY- 83 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~----~~~~---~~~~~~----~~~~~~g~- 83 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+.... ..+. ...+ .+.... .+.....+
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~ 112 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELP 112 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHH
Confidence 568999999999999999999999998766555433322221100 0000 0000 000000 00000000
Q ss_pred ----eE--------------eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 84 ----AI--------------RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 84 ----~~--------------~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
.. ...-....+..+.-.+.|+.++..+....+.+++++++||+- ..+|......+.+.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~ 191 (228)
T PRK10584 113 ALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT-GNLDRQTGDKIADLLFS 191 (228)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHH
Confidence 00 000000012334458999999999998899999999999998 78888887775555555
Q ss_pred hhhc-CceEEEEecccC
Q 012322 146 LRAS-KLKILITSATLD 161 (466)
Q Consensus 146 ~~~~-~~~ii~~SAT~~ 161 (466)
.... +..+|+.|+-++
T Consensus 192 ~~~~~~~tii~~sH~~~ 208 (228)
T PRK10584 192 LNREHGTTLILVTHDLQ 208 (228)
T ss_pred HHHhcCCEEEEEecCHH
Confidence 4332 467777777653
No 253
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.50 E-value=3.1e-07 Score=82.62 Aligned_cols=143 Identities=12% Similarity=0.057 Sum_probs=81.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEE-EEeCch----------hHHHHHHHHHHHHHhCCccCCeeeee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-GVTQPR----------RVAAVSVARRVAQELGVRLGEEVGYA 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i-~~~~p~----------~~l~~~~~~~~~~~~~~~~~~~~g~~ 84 (466)
.+.+|+.+.+.||+||||||++..+++...+..|... +..... ...+.+.........+..........
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~ 88 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFC 88 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3578999999999999999999999998776666543 211100 00111111111111111000000000
Q ss_pred Ee-eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 85 IR-FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 85 ~~-~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
.. ..-....+..+.-++.|+.++..+....+.+++++++||+- ..++......+...+.+... +..+++.|+.+
T Consensus 89 ~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~-~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~ 163 (213)
T PRK15177 89 YQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKL-YTGDNATQLRMQAALACQLQ-QKGLIVLTHNP 163 (213)
T ss_pred HHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-ccCCHHHHHHHHHHHHHHhh-CCcEEEEECCH
Confidence 00 00000112345558999999999888889999999999976 46677665555554544333 33466666544
No 254
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.50 E-value=2e-07 Score=90.17 Aligned_cols=138 Identities=24% Similarity=0.286 Sum_probs=87.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHH-----------------------HHHHHH--
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVS-----------------------VARRVA-- 70 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~-----------------------~~~~~~-- 70 (466)
+.+|+.+.|.||+||||||++..+.+...++.|...+...+.... ..+ +.+.+.
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~ 95 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLG 95 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHH
Confidence 568999999999999999999999998877666544333221100 000 000000
Q ss_pred -HHhCCc----------cCCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHH
Q 012322 71 -QELGVR----------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL 139 (466)
Q Consensus 71 -~~~~~~----------~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~ 139 (466)
...+.. ....+|. +. ..+....-+|.|+.++..+.+.+..+++++++||+. ..+|......+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~vgL----~~--~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~-saLD~~~r~~l 168 (363)
T TIGR01186 96 PELLGWPEQERKEKALELLKLVGL----EE--YEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF-SALDPLIRDSM 168 (363)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCC----ch--hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHH
Confidence 000000 0000000 00 012233348999999999999999999999999998 78898887776
Q ss_pred HHHHHHhhhc-CceEEEEecccC
Q 012322 140 VKRLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 140 l~~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.+.+...... +..+|+.|+.++
T Consensus 169 ~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 169 QDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH
Confidence 6666655432 567888888764
No 255
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=1.9e-07 Score=85.22 Aligned_cols=144 Identities=18% Similarity=0.187 Sum_probs=84.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHH--------------HHHHHhCCccCCe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVAR--------------RVAQELGVRLGEE 80 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~--------------~~~~~~~~~~~~~ 80 (466)
.+..|+.+.|.||+||||||++..+++...+..|...+...+.... .....+ .+.+.........
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~ 104 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNA 104 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCC
Confidence 3568999999999999999999999998776655433222111100 000000 1111110000000
Q ss_pred eeeeE-------eecc---c------cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 81 VGYAI-------RFED---R------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 81 ~g~~~-------~~~~---~------~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
..... .... . ......+.-++.|+.++..+....+.+++++++||+- ..+|......+.+.+.
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~ 183 (229)
T cd03254 105 TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEAT-SNIDTETEKLIQEALE 183 (229)
T ss_pred CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHH
Confidence 00000 0000 0 0011224568999999999999999999999999998 7889888777656555
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
... .+..+|+.|+.++
T Consensus 184 ~~~-~~~tii~~sh~~~ 199 (229)
T cd03254 184 KLM-KGRTSIIIAHRLS 199 (229)
T ss_pred Hhc-CCCEEEEEecCHH
Confidence 543 3667777777653
No 256
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.49 E-value=1.9e-07 Score=97.34 Aligned_cols=144 Identities=22% Similarity=0.256 Sum_probs=92.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-HHHHHHH---H---HhCCccCCeeeee---E
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---Q---ELGVRLGEEVGYA---I 85 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-~~~~~~~---~---~~~~~~~~~~g~~---~ 85 (466)
.+..|+.+.|+|++||||||++..+.+...+..|...+-..+....-. +..+.+. + .+.-.+.+..... .
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~ 574 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEA 574 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCC
Confidence 467899999999999999999999999988877766555555332221 1111110 0 0000000000000 0
Q ss_pred e---------------eccccCccceEEE------cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 86 R---------------FEDRTSERTLIKY------LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 86 ~---------------~~~~~~~~~~i~~------~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
. +-...+.+.+-.+ .|.|+.++..+++..+.+++++++||+- ..+|.+....+...+.
T Consensus 575 ~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaT-SaLD~~sE~~I~~~L~ 653 (709)
T COG2274 575 TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT-SALDPETEAIILQNLL 653 (709)
T ss_pred CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcc-cccCHhHHHHHHHHHH
Confidence 0 0000011111222 7999999999999999999999999998 7889888887777777
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
+... +..+|++|+-++
T Consensus 654 ~~~~-~~T~I~IaHRl~ 669 (709)
T COG2274 654 QILQ-GRTVIIIAHRLS 669 (709)
T ss_pred HHhc-CCeEEEEEccch
Confidence 7665 678888888664
No 257
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=3e-07 Score=86.48 Aligned_cols=145 Identities=23% Similarity=0.277 Sum_probs=88.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHHHH---H-----HhCCccCCeeeee--
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---Q-----ELGVRLGEEVGYA-- 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~~~---~-----~~~~~~~~~~g~~-- 84 (466)
.+..|+.+.|+||+||||||++..+++...+..|...+...+.... ..+..+.+. + .....+...+.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~ 108 (279)
T PRK13650 29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLE 108 (279)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHH
Confidence 3568999999999999999999999998777666544333221100 000000000 0 0000000000000
Q ss_pred ---Eee--------------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 85 ---IRF--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 85 ---~~~--------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
... .-....+....-.|.|+.++..++...+.+++++++||+- ..+|......+++.+....
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt-~~LD~~~~~~l~~~l~~l~ 187 (279)
T PRK13650 109 NKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEAT-SMLDPEGRLELIKTIKGIR 187 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHH
Confidence 000 0000112344568999999999999999999999999998 7888888777666665554
Q ss_pred hc-CceEEEEecccC
Q 012322 148 AS-KLKILITSATLD 161 (466)
Q Consensus 148 ~~-~~~ii~~SAT~~ 161 (466)
.. +..+|+.|+.++
T Consensus 188 ~~~g~tilivtH~~~ 202 (279)
T PRK13650 188 DDYQMTVISITHDLD 202 (279)
T ss_pred HhcCCEEEEEecCHH
Confidence 42 577888888754
No 258
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.49 E-value=2.4e-07 Score=81.99 Aligned_cols=144 Identities=23% Similarity=0.249 Sum_probs=86.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHH---HHHHhCCccCCeeeeeE----ee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARR---VAQELGVRLGEEVGYAI----RF 87 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~---~~~~~~~~~~~~~g~~~----~~ 87 (466)
.+.+|+.++++||+||||||.+.++-....++.|...+...+.+.. ..+..++ +-+..+.....++..++ ..
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L 102 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL 102 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhh
Confidence 3678999999999999999999999998888887766655543321 1111111 11222222222211111 00
Q ss_pred ccccCc---------------------cceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHH---HHHHHHHH
Q 012322 88 EDRTSE---------------------RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI---LLGLVKRL 143 (466)
Q Consensus 88 ~~~~~~---------------------~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~---~~~~l~~i 143 (466)
..+... ..-=--+|.|+-+|.-..++...++.++.+||.- ..+|+-. +...++++
T Consensus 103 ~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPF-gALDpI~R~~lQ~e~~~l 181 (309)
T COG1125 103 LGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPF-GALDPITRKQLQEEIKEL 181 (309)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCc-cccChhhHHHHHHHHHHH
Confidence 000000 0000116788888888888888899999999987 4555544 33334444
Q ss_pred HHhhhcCceEEEEecccCh
Q 012322 144 VNLRASKLKILITSATLDG 162 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~~~ 162 (466)
.+.. +..+|++|+.++.
T Consensus 182 q~~l--~kTivfVTHDidE 198 (309)
T COG1125 182 QKEL--GKTIVFVTHDIDE 198 (309)
T ss_pred HHHh--CCEEEEEecCHHH
Confidence 4444 6789999998864
No 259
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.48 E-value=1.3e-07 Score=87.63 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=83.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-------------HH--HHHHHHHHHHhCCccCCe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-------------AA--VSVARRVAQELGVRLGEE 80 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-------------l~--~~~~~~~~~~~~~~~~~~ 80 (466)
.+.+|+.+.|.||+||||||++..+++...+..|...+-..+... +. ..+.+.+.-.........
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~ 113 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDA 113 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHH
Confidence 356899999999999999999999999876655543221111100 00 000111100000000000
Q ss_pred ee-eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceEEEEec
Q 012322 81 VG-YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSA 158 (466)
Q Consensus 81 ~g-~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SA 158 (466)
+. ....+.-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+..... .+..+|+.|+
T Consensus 114 ~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~~~tviivsH 192 (257)
T PRK11247 114 ALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL-GALDALTRIEMQDLIESLWQQHGFTVLLVTH 192 (257)
T ss_pred HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 00 000000000112334558999999999998899999999999998 78888887765555554432 2567777777
Q ss_pred ccC
Q 012322 159 TLD 161 (466)
Q Consensus 159 T~~ 161 (466)
-++
T Consensus 193 d~~ 195 (257)
T PRK11247 193 DVS 195 (257)
T ss_pred CHH
Confidence 553
No 260
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.48 E-value=3.5e-07 Score=82.56 Aligned_cols=143 Identities=20% Similarity=0.191 Sum_probs=83.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEE----------------EEeCchhHHH--HHHHHHHH---HHhCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII----------------GVTQPRRVAA--VSVARRVA---QELGV 75 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i----------------~~~~p~~~l~--~~~~~~~~---~~~~~ 75 (466)
+.+|+.+.|.||+||||||++..+++...+..|... .++.....+. ..+.+.+. ...+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 102 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV 102 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCC
Confidence 568999999999999999999999998765444322 1221110000 00111110 00000
Q ss_pred ccCC---eeee-eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-C
Q 012322 76 RLGE---EVGY-AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-K 150 (466)
Q Consensus 76 ~~~~---~~g~-~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~ 150 (466)
.... .+.. .....-....+..+.-+|.|+.++..+....+.+.+++++||+- ..+|......+++.+.+.... +
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~ 181 (213)
T cd03301 103 PKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL-SNLDAKLRVQMRAELKRLQQRLG 181 (213)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcC
Confidence 0000 0000 00000000112334558999999999988889999999999998 789998877766666555432 5
Q ss_pred ceEEEEeccc
Q 012322 151 LKILITSATL 160 (466)
Q Consensus 151 ~~ii~~SAT~ 160 (466)
..+|+.|+.+
T Consensus 182 ~tvi~~sH~~ 191 (213)
T cd03301 182 TTTIYVTHDQ 191 (213)
T ss_pred CEEEEEeCCH
Confidence 6777777754
No 261
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=3.8e-07 Score=85.73 Aligned_cols=144 Identities=22% Similarity=0.178 Sum_probs=86.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHHHHHHHHH--------HHhCCccCCee------
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRVA--------QELGVRLGEEV------ 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~~~~~~~~--------~~~~~~~~~~~------ 81 (466)
+..|+.+.|.||+|+||||++..+.+...+..|...+...+... ...+..+.+. ...+.++...+
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~ 109 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLEN 109 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhh
Confidence 56899999999999999999999999887766644332222110 0000000000 00000000000
Q ss_pred -eeeEe-----e-------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 82 -GYAIR-----F-------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 82 -g~~~~-----~-------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
+.... . .-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+...
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13635 110 IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEAT-SMLDPRGRREVLETVRQLKE 188 (279)
T ss_pred CCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 00000 0 0000112344568999999999999999999999999998 78999887776666655543
Q ss_pred c-CceEEEEecccC
Q 012322 149 S-KLKILITSATLD 161 (466)
Q Consensus 149 ~-~~~ii~~SAT~~ 161 (466)
. +..+++.|+-++
T Consensus 189 ~~~~tilivsH~~~ 202 (279)
T PRK13635 189 QKGITVLSITHDLD 202 (279)
T ss_pred cCCCEEEEEecCHH
Confidence 3 567788777654
No 262
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=2.3e-07 Score=85.27 Aligned_cols=145 Identities=18% Similarity=0.153 Sum_probs=83.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc----------------hhHHH--HHHHHHHH---HHhC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP----------------RRVAA--VSVARRVA---QELG 74 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p----------------~~~l~--~~~~~~~~---~~~~ 74 (466)
.+.+|+.+.|.||+||||||++..+++...+..|...+...+ ...+. ..+.+.+. ...+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 103 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKP 103 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhcc
Confidence 356899999999999999999999999876554432221111 00000 00111110 0000
Q ss_pred C----ccC---Cee-eeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 75 V----RLG---EEV-GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 75 ~----~~~---~~~-g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
. ... ..+ .....+.-....+..+.-+|.|+.++..+....+.+.+++++||+- ..+|......+.+.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~ 182 (239)
T cd03296 104 RSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF-GALDAKVRKELRRWLRRL 182 (239)
T ss_pred ccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHH
Confidence 0 000 000 0000000000112334458999999999999899999999999998 788888877766655554
Q ss_pred hhc-CceEEEEecccC
Q 012322 147 RAS-KLKILITSATLD 161 (466)
Q Consensus 147 ~~~-~~~ii~~SAT~~ 161 (466)
... +..+|+.|+.++
T Consensus 183 ~~~~~~tvii~sH~~~ 198 (239)
T cd03296 183 HDELHVTTVFVTHDQE 198 (239)
T ss_pred HHHcCCEEEEEeCCHH
Confidence 432 467778777653
No 263
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.48 E-value=1.7e-07 Score=85.57 Aligned_cols=145 Identities=19% Similarity=0.173 Sum_probs=85.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHH-HHH---HHHHhCCccCCee---------
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSV-ARR---VAQELGVRLGEEV--------- 81 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~-~~~---~~~~~~~~~~~~~--------- 81 (466)
.+.+|+.+.|.||+||||||++..+.+...+..|...+...+.... ..+. ... +.+.........+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 101 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLA 101 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHH
Confidence 3578999999999999999999999998776655433322111000 0000 000 0000000000000
Q ss_pred --eeeE-----e----ec-cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc
Q 012322 82 --GYAI-----R----FE-DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (466)
Q Consensus 82 --g~~~-----~----~~-~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~ 149 (466)
+... . .+ .....+..+.-++.|+.++..+....+.+++++++||+- ..+|......+.+.+.+....
T Consensus 102 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~ 180 (230)
T TIGR03410 102 ALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT-EGIQPSIIKDIGRVIRRLRAE 180 (230)
T ss_pred hcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHc
Confidence 0000 0 00 000112344458999999999988889999999999998 789998877766666554432
Q ss_pred -CceEEEEecccC
Q 012322 150 -KLKILITSATLD 161 (466)
Q Consensus 150 -~~~ii~~SAT~~ 161 (466)
+..+|+.|+.++
T Consensus 181 ~~~tii~~sH~~~ 193 (230)
T TIGR03410 181 GGMAILLVEQYLD 193 (230)
T ss_pred CCcEEEEEeCCHH
Confidence 567777777653
No 264
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=3.8e-07 Score=88.17 Aligned_cols=150 Identities=21% Similarity=0.212 Sum_probs=87.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HH----------------------HHHHHHH---
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AV----------------------SVARRVA--- 70 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~----------------------~~~~~~~--- 70 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+.... .. .+.+.+.
T Consensus 28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~ 107 (343)
T PRK11153 28 IPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPL 107 (343)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHH
Confidence 568999999999999999999999998776655433322221100 00 0000000
Q ss_pred HHhCCccCC---eeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 71 QELGVRLGE---EVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 71 ~~~~~~~~~---~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
...+..... .+.... ...-....+....-+|.|+.++..+....+.+++++++||+- ..+|......+++.+...
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPt-s~LD~~~~~~l~~~L~~l 186 (343)
T PRK11153 108 ELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEAT-SALDPATTRSILELLKDI 186 (343)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHH
Confidence 000000000 000000 000000012233458999999999999999999999999998 788988877766655554
Q ss_pred hhc-CceEEEEecccChhHHHhhc
Q 012322 147 RAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 147 ~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
... +..+|+.|+.++ .+.++.
T Consensus 187 ~~~~g~tiilvtH~~~--~i~~~~ 208 (343)
T PRK11153 187 NRELGLTIVLITHEMD--VVKRIC 208 (343)
T ss_pred HHhcCCEEEEEeCCHH--HHHHhC
Confidence 432 567787777653 344444
No 265
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.48 E-value=4.4e-07 Score=82.82 Aligned_cols=144 Identities=21% Similarity=0.244 Sum_probs=84.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH------HH---------HHHHHHHHHHh-----CCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV------AA---------VSVARRVAQEL-----GVR 76 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~------l~---------~~~~~~~~~~~-----~~~ 76 (466)
+.+|+.+.|+||+||||||++..+.+...+..|...+...+... .+ ..+.+.+.-.. +..
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~ 87 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLS 87 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCC
Confidence 56899999999999999999999999876655543322111000 00 00111110000 000
Q ss_pred cCC---eeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-Cc
Q 012322 77 LGE---EVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KL 151 (466)
Q Consensus 77 ~~~---~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~ 151 (466)
... .+.... .+.-....+..+.-+|.|+.++..+....+.+++++|+||+- ..+|......+.+.+.+.... +.
T Consensus 88 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~~~~~ 166 (230)
T TIGR01184 88 KSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF-GALDALTRGNLQEELMQIWEEHRV 166 (230)
T ss_pred HHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC-cCCCHHHHHHHHHHHHHHHHhcCC
Confidence 000 000000 000000112334558999999999998899999999999998 789988877766666554432 56
Q ss_pred eEEEEecccC
Q 012322 152 KILITSATLD 161 (466)
Q Consensus 152 ~ii~~SAT~~ 161 (466)
.+|+.|+.++
T Consensus 167 tii~~sH~~~ 176 (230)
T TIGR01184 167 TVLMVTHDVD 176 (230)
T ss_pred EEEEEeCCHH
Confidence 7788777653
No 266
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=3e-07 Score=84.69 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=84.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHH-------------------HHHHHHH---HH
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAV-------------------SVARRVA---QE 72 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~-------------------~~~~~~~---~~ 72 (466)
.+..|+.+.|.||+||||||++..+.+...+..|...+...+... ... .+.+.+. ..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 102 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKL 102 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHH
Confidence 356899999999999999999999999876655543322211100 000 0011110 00
Q ss_pred hCCccCC---eeee-eEeecccc--CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 73 LGVRLGE---EVGY-AIRFEDRT--SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 73 ~~~~~~~---~~g~-~~~~~~~~--~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
.+..... .+.. ...+.-.. ..+..+.-+|.|+.++..+....+.+++++++||+. ..+|......+++.+...
T Consensus 103 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~L~~~ 181 (242)
T cd03295 103 LKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPF-GALDPITRDQLQEEFKRL 181 (242)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHH
Confidence 0000000 0000 00000000 112334458999999999999999999999999998 788888877766656554
Q ss_pred hhc-CceEEEEeccc
Q 012322 147 RAS-KLKILITSATL 160 (466)
Q Consensus 147 ~~~-~~~ii~~SAT~ 160 (466)
... +..+|+.|+.+
T Consensus 182 ~~~~g~tvii~sH~~ 196 (242)
T cd03295 182 QQELGKTIVFVTHDI 196 (242)
T ss_pred HHHcCCEEEEEecCH
Confidence 432 56677777754
No 267
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.48 E-value=1.6e-07 Score=96.89 Aligned_cols=143 Identities=24% Similarity=0.242 Sum_probs=90.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHHHHHHH---HH---hCCccCCeeeee---E
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QE---LGVRLGEEVGYA---I 85 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~~~~~~---~~---~~~~~~~~~g~~---~ 85 (466)
.+.+|+.+.|+||+||||||++..+++...+.+|...+...+.+..- .+..+.++ +. ++.++.+...+. .
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~ 423 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDA 423 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCC
Confidence 45689999999999999999999999988887776555444433221 11111110 00 000000000000 0
Q ss_pred e------------ec---cccCc--cc----eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 86 R------------FE---DRTSE--RT----LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 86 ~------------~~---~~~~~--~~----~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
. .. ..... ++ .-.-.++|+.+|..+++..+.+.+++++||+- ..+|.+....+.+.+.
T Consensus 424 ~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~t-s~lD~~~~~~i~~~l~ 502 (529)
T TIGR02857 424 SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPT-AHLDAETEALVTEALR 502 (529)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-cccCHHHHHHHHHHHH
Confidence 0 00 00000 01 12237899999999999999999999999998 7899988888777776
Q ss_pred HhhhcCceEEEEeccc
Q 012322 145 NLRASKLKILITSATL 160 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~ 160 (466)
+..+ +..+|+.|+-+
T Consensus 503 ~~~~-~~t~i~itH~~ 517 (529)
T TIGR02857 503 ALAQ-GRTVLLVTHRL 517 (529)
T ss_pred HhcC-CCEEEEEecCH
Confidence 6544 77888888865
No 268
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=2.2e-07 Score=85.59 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=82.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch-------hHHHHHHHHHH---HHHhC----CccCCee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-------RVAAVSVARRV---AQELG----VRLGEEV 81 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~-------~~l~~~~~~~~---~~~~~----~~~~~~~ 81 (466)
.+.+|+.+.|.||+||||||++..+++...+..|...+-..+. ........+.+ .+... ..+...+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i 103 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNL 103 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHH
Confidence 3568999999999999999999999998766555433322110 00000000000 00000 0000000
Q ss_pred --------eee---E---------eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 82 --------GYA---I---------RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 82 --------g~~---~---------~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
+.. . ...-....+..+.-.+.|+.++..+....+.+++++++||+. ..+|......+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt-~~LD~~~~~~l~~ 182 (242)
T PRK11124 104 IEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPT-AALDPEITAQIVS 182 (242)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-CcCCHHHHHHHHH
Confidence 000 0 000000112334458899999999988899999999999998 7888887766555
Q ss_pred HHHHhhhcCceEEEEeccc
Q 012322 142 RLVNLRASKLKILITSATL 160 (466)
Q Consensus 142 ~i~~~~~~~~~ii~~SAT~ 160 (466)
.+.+....+..+++.|+.+
T Consensus 183 ~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 183 IIRELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHHHHcCCEEEEEeCCH
Confidence 5544433355677766654
No 269
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.47 E-value=1.8e-07 Score=97.72 Aligned_cols=142 Identities=21% Similarity=0.244 Sum_probs=88.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-HHHHHH--------------HHHhCCccCCe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRV--------------AQELGVRLGEE 80 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-~~~~~~--------------~~~~~~~~~~~ 80 (466)
.+.+|+.++|+|++||||||++..+++...+..|...+...+...... +..+.+ .+....... .
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~ 435 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP-D 435 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC-C
Confidence 356899999999999999999999999888776654444333222111 111111 111000000 0
Q ss_pred eeee--------Eeecc---ccCc--cc----eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 81 VGYA--------IRFED---RTSE--RT----LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 81 ~g~~--------~~~~~---~~~~--~~----~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
.... ...++ ..+. ++ .-.-.++|+.+|..+++..+.+.+++|+||+- ..+|.+....+++.+
T Consensus 436 ~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt-s~LD~~t~~~i~~~l 514 (588)
T PRK13657 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT-SALDVETEAKVKAAL 514 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHH
Confidence 0000 00000 0000 11 11237999999999999999999999999998 789998888877777
Q ss_pred HHhhhcCceEEEEeccc
Q 012322 144 VNLRASKLKILITSATL 160 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~ 160 (466)
....+ +..+|+.|+-+
T Consensus 515 ~~~~~-~~tvIiitHr~ 530 (588)
T PRK13657 515 DELMK-GRTTFIIAHRL 530 (588)
T ss_pred HHHhc-CCEEEEEEecH
Confidence 66544 67788888865
No 270
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=2.3e-07 Score=86.92 Aligned_cols=144 Identities=19% Similarity=0.179 Sum_probs=85.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH--HHHHHHHHH---H-----HhCCccCCee-----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA--AVSVARRVA---Q-----ELGVRLGEEV----- 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l--~~~~~~~~~---~-----~~~~~~~~~~----- 81 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+...+.... .....+.+. + ..+..+...+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 104 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPE 104 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHH
Confidence 578999999999999999999999998776655433322211000 000000000 0 0000000000
Q ss_pred --eeeE-----e-------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 82 --GYAI-----R-------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 82 --g~~~-----~-------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
+... . ..-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+....
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~l~ 183 (274)
T PRK13644 105 NLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVT-SMLDPDSGIAVLERIKKLH 183 (274)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHH
Confidence 0000 0 00000112445568999999999999999999999999998 7888888777666655544
Q ss_pred hcCceEEEEecccC
Q 012322 148 ASKLKILITSATLD 161 (466)
Q Consensus 148 ~~~~~ii~~SAT~~ 161 (466)
..+..+|+.|+.++
T Consensus 184 ~~g~til~~tH~~~ 197 (274)
T PRK13644 184 EKGKTIVYITHNLE 197 (274)
T ss_pred hCCCEEEEEecCHH
Confidence 33567777777554
No 271
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.47 E-value=3.6e-07 Score=81.98 Aligned_cols=144 Identities=17% Similarity=0.072 Sum_probs=85.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHHH---HHHh---CCccCCeeeee--Ee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRV---AQEL---GVRLGEEVGYA--IR 86 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~~---~~~~---~~~~~~~~g~~--~~ 86 (466)
.+.+|+.+.|.||+||||||++..+++......|...+...+.... ..+....+ .+.. ...+....... ..
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~ 109 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYS 109 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCC
Confidence 3568999999999999999999999998776666543332221100 00000110 0000 00000000000 00
Q ss_pred e---ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 87 F---EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 87 ~---~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
. ......+....-.+.|+.++..+....+.+++++++||+- ..+|......+++.+..... +..+|+.|+.+.
T Consensus 110 ~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~th~~~ 185 (207)
T cd03369 110 DEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEAT-ASIDYATDALIQKTIREEFT-NSTILTIAHRLR 185 (207)
T ss_pred HHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH
Confidence 0 0000112345568899999999988889999999999998 78888877765555555433 667787777654
No 272
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=6.1e-07 Score=75.86 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=85.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHH---HHHHHhCCccCCeeeeeEeec----
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVAR---RVAQELGVRLGEEVGYAIRFE---- 88 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~---~~~~~~~~~~~~~~g~~~~~~---- 88 (466)
.+..|+.+.|.||+|+||||++..+.+...+..|...+-..|......+..+ .+....+++...++-.+.+|-
T Consensus 24 ~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~ 103 (209)
T COG4133 24 TLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFH 103 (209)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHh
Confidence 3568999999999999999999999999888777666655664443332212 222222222211111111110
Q ss_pred ----------------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCce
Q 012322 89 ----------------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (466)
Q Consensus 89 ----------------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (466)
-....+..+-..|.|+..+..+++-++..-.+-|+||+- ..+|..-... +..+....-..--
T Consensus 104 ~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~-taLDk~g~a~-l~~l~~~H~~~GG 181 (209)
T COG4133 104 GSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPF-TALDKEGVAL-LTALMAAHAAQGG 181 (209)
T ss_pred CCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcc-cccCHHHHHH-HHHHHHHHhcCCC
Confidence 001123455668999999999998899999999999987 5677665444 4444433322333
Q ss_pred EEEE
Q 012322 153 ILIT 156 (466)
Q Consensus 153 ii~~ 156 (466)
+|++
T Consensus 182 iVll 185 (209)
T COG4133 182 IVLL 185 (209)
T ss_pred EEEE
Confidence 4443
No 273
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.47 E-value=2.2e-07 Score=91.07 Aligned_cols=144 Identities=22% Similarity=0.268 Sum_probs=86.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHHHHHHHH---HHHhC----CccCCeeeee----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRV---AQELG----VRLGEEVGYA---- 84 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~~~~~~~---~~~~~----~~~~~~~g~~---- 84 (466)
+.+|+.+.+.||+||||||++..+.+...+..|...+...+... ...+..+++ .+... ..+...+.+.
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~ 105 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPH 105 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchh
Confidence 56899999999999999999999999887766654443322111 111111111 01000 0000000000
Q ss_pred -Eeec-------c-----------ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 85 -IRFE-------D-----------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 85 -~~~~-------~-----------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
..+. . ....+..+.-+|.|+.++..+...++++++++++||+- ..+|......+++.+.+
T Consensus 106 ~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPt-sgLD~~~~~~l~~lL~~ 184 (402)
T PRK09536 106 RSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPT-ASLDINHQVRTLELVRR 184 (402)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHH
Confidence 0000 0 00012344558999999999999999999999999988 78888876665555544
Q ss_pred hhhcCceEEEEecccC
Q 012322 146 LRASKLKILITSATLD 161 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~ 161 (466)
....+..+|+.|+-++
T Consensus 185 l~~~g~TIIivsHdl~ 200 (402)
T PRK09536 185 LVDDGKTAVAAIHDLD 200 (402)
T ss_pred HHhcCCEEEEEECCHH
Confidence 4333567777777654
No 274
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.46 E-value=3.4e-07 Score=95.66 Aligned_cols=144 Identities=22% Similarity=0.295 Sum_probs=91.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-HHHHHH---HHh---CCccCCeeeee----
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARRVA---QEL---GVRLGEEVGYA---- 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-~~~~~~---~~~---~~~~~~~~g~~---- 84 (466)
.+.+|+.++|+|++||||||++..+++...+..|...+...+......+ ..+.++ +.. +-++.....+.
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~ 444 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQ 444 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCC
Confidence 3568999999999999999999999999888777665555554332211 111110 100 00000000000
Q ss_pred E------------eec---cccCc--cceE----EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 85 I------------RFE---DRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 85 ~------------~~~---~~~~~--~~~i----~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
. ..+ ..... ++.+ .-.|.|+.++..+++..+++.+++|+||+- ..+|.+....+.+.+
T Consensus 445 ~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpt-saLD~~t~~~i~~~l 523 (582)
T PRK11176 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT-SALDTESERAIQAAL 523 (582)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcc-ccCCHHHHHHHHHHH
Confidence 0 000 00000 1111 237999999999999999999999999998 788988877777666
Q ss_pred HHhhhcCceEEEEecccC
Q 012322 144 VNLRASKLKILITSATLD 161 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~~ 161 (466)
.+... +..+|+.|+-++
T Consensus 524 ~~~~~-~~tvI~VtHr~~ 540 (582)
T PRK11176 524 DELQK-NRTSLVIAHRLS 540 (582)
T ss_pred HHHhC-CCEEEEEecchH
Confidence 65544 778888888763
No 275
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.46 E-value=1.6e-06 Score=78.86 Aligned_cols=144 Identities=17% Similarity=0.093 Sum_probs=84.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-HHHH------------------HHHHHHH---HHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-VAAV------------------SVARRVA---QELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-~l~~------------------~~~~~~~---~~~~ 74 (466)
+.+|+.+.|+||+||||||++..+++...+..|...+...+.. .... .+.+.+. ...+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~ 109 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRN 109 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcC
Confidence 5689999999999999999999999977665554322211100 0000 0011110 0000
Q ss_pred CccC-Ceee-eeEeeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cC
Q 012322 75 VRLG-EEVG-YAIRFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SK 150 (466)
Q Consensus 75 ~~~~-~~~g-~~~~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~ 150 (466)
.... .... ......-. ...+..+.-++.|+.++..+....+.+++++|+||+- ..+|......+.+.+..... .+
T Consensus 110 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~ 188 (225)
T PRK10247 110 QQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT-SALDESNKHNVNEIIHRYVREQN 188 (225)
T ss_pred CChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcC
Confidence 0000 0000 00000000 0113445568999999999999999999999999998 78888877765555554433 25
Q ss_pred ceEEEEecccC
Q 012322 151 LKILITSATLD 161 (466)
Q Consensus 151 ~~ii~~SAT~~ 161 (466)
..+|+.|+..+
T Consensus 189 ~tvii~sh~~~ 199 (225)
T PRK10247 189 IAVLWVTHDKD 199 (225)
T ss_pred CEEEEEECChH
Confidence 67888887654
No 276
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=2.5e-07 Score=85.17 Aligned_cols=143 Identities=18% Similarity=0.199 Sum_probs=83.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-----HHHHHHHHHHHHHhC----CccCCeeee----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-----VAAVSVARRVAQELG----VRLGEEVGY---- 83 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-----~l~~~~~~~~~~~~~----~~~~~~~g~---- 83 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+...+.. .........+.+... ..+...+.+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 105 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQI 105 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhc
Confidence 5689999999999999999999999987766554333222210 000000000000000 000000000
Q ss_pred --eEee--------------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 84 --AIRF--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 84 --~~~~--------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
.... .-....+..+.-++.|+.++..+....+.+++++++||+- ..+|......+.+.+....
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~ 184 (241)
T PRK10895 106 RDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPF-AGVDPISVIDIKRIIEHLR 184 (241)
T ss_pred ccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHH
Confidence 0000 0000012334558999999999988899999999999998 7888887766555544443
Q ss_pred hcCceEEEEeccc
Q 012322 148 ASKLKILITSATL 160 (466)
Q Consensus 148 ~~~~~ii~~SAT~ 160 (466)
..+..+|+.|+.+
T Consensus 185 ~~g~tiii~sH~~ 197 (241)
T PRK10895 185 DSGLGVLITDHNV 197 (241)
T ss_pred hcCCEEEEEEcCH
Confidence 3356677777754
No 277
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.46 E-value=1.3e-06 Score=93.22 Aligned_cols=143 Identities=20% Similarity=0.230 Sum_probs=89.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-HHHH--------------HHHHhCCccC--
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARR--------------VAQELGVRLG-- 78 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-~~~~--------------~~~~~~~~~~-- 78 (466)
.+..|+.+.|+|++||||||++..+++...+..|...+...|.+....+ ..+. +.+.......
T Consensus 487 ~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~ 566 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYA 566 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCC
Confidence 3568999999999999999999999998887777655444443322111 1110 1111100000
Q ss_pred ---------CeeeeeEeeccccCc--cce----EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 79 ---------EEVGYAIRFEDRTSE--RTL----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 79 ---------~~~g~~~~~~~~~~~--~~~----i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
...+... +-..... ++. -.-.|.|+.++..+++..+.+.+++|+||+- ..+|......+.+.+
T Consensus 567 ~~~~i~~a~~~~~l~~-~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~T-s~LD~~te~~i~~~l 644 (694)
T TIGR03375 567 DDEEILRAAELAGVTE-FVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPT-SAMDNRSEERFKDRL 644 (694)
T ss_pred CHHHHHHHHHHcChHH-HHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHH
Confidence 0000000 0000000 011 1238999999999999999999999999998 788998888777776
Q ss_pred HHhhhcCceEEEEecccC
Q 012322 144 VNLRASKLKILITSATLD 161 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~~ 161 (466)
.+..+ +..+|+.|+-++
T Consensus 645 ~~~~~-~~T~iiItHrl~ 661 (694)
T TIGR03375 645 KRWLA-GKTLVLVTHRTS 661 (694)
T ss_pred HHHhC-CCEEEEEecCHH
Confidence 66554 678888888664
No 278
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=4.2e-07 Score=81.88 Aligned_cols=144 Identities=22% Similarity=0.245 Sum_probs=84.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH--HH-------HH---H--HHHHHHhCCccCCee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA--AV-------SV---A--RRVAQELGVRLGEEV 81 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l--~~-------~~---~--~~~~~~~~~~~~~~~ 81 (466)
.+.+|+.+.|.||+||||||++..+++...+..|...+...+.... .. |. . ..+.+..........
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 99 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL 99 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc
Confidence 4678999999999999999999999988766555432221111000 00 00 0 000111100000000
Q ss_pred eeeEee-----------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-
Q 012322 82 GYAIRF-----------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS- 149 (466)
Q Consensus 82 g~~~~~-----------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~- 149 (466)
+..... .-....+..+.-.+.|+.++..+....+.+++++++||+- ..+|......+++.+.+....
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~ 178 (211)
T cd03298 100 KLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPF-AALDPALRAEMLDLVLDLHAET 178 (211)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhc
Confidence 000000 0000012344568999999999988899999999999998 788888877766666554432
Q ss_pred CceEEEEeccc
Q 012322 150 KLKILITSATL 160 (466)
Q Consensus 150 ~~~ii~~SAT~ 160 (466)
+..+|+.|+.+
T Consensus 179 ~~tii~~sH~~ 189 (211)
T cd03298 179 KMTVLMVTHQP 189 (211)
T ss_pred CCEEEEEecCH
Confidence 56677777754
No 279
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.6e-07 Score=86.31 Aligned_cols=151 Identities=17% Similarity=0.209 Sum_probs=86.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHH-HHHH---HHHHhC----CccCCeeee---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVS-VARR---VAQELG----VRLGEEVGY--- 83 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~-~~~~---~~~~~~----~~~~~~~g~--- 83 (466)
.+.+|+.+.|+||+||||||++..+.+...+..|...+...+.... ..+ ..+. +.+... ..+......
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 106 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGF 106 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhh
Confidence 3578999999999999999999999988766655433322221100 000 0000 000000 000000000
Q ss_pred --eE-e-----------ec-cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 84 --AI-R-----------FE-DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 84 --~~-~-----------~~-~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
.. . .. -.......+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+.....
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~ 185 (237)
T PRK11614 107 FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS-LGLAPIIIQQIFDTIEQLRE 185 (237)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHH
Confidence 00 0 00 000012234457899999999888889999999999998 78888887776666555444
Q ss_pred cCceEEEEecccChhHHHhhc
Q 012322 149 SKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 149 ~~~~ii~~SAT~~~~~~~~~~ 169 (466)
.+..+|+.|+.+ +.+.++.
T Consensus 186 ~~~tiii~sH~~--~~~~~~~ 204 (237)
T PRK11614 186 QGMTIFLVEQNA--NQALKLA 204 (237)
T ss_pred CCCEEEEEeCcH--HHHHhhC
Confidence 356677766644 3444544
No 280
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=2.2e-07 Score=87.71 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=88.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-----HHHH--------------------HHHHHHH-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-----VAAV--------------------SVARRVA- 70 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-----~l~~--------------------~~~~~~~- 70 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+-..+.. .... .+.+.+.
T Consensus 29 i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~ 108 (288)
T PRK13643 29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAF 108 (288)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHh
Confidence 5689999999999999999999999987766554333222210 0000 0111110
Q ss_pred --HHhCCccCC---eeeeeE-eecc-ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 71 --QELGVRLGE---EVGYAI-RFED-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 71 --~~~~~~~~~---~~g~~~-~~~~-~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
...+..... .+.... ...- ....+..+.-+|.|+.++..++...+.+++++++||+- ..+|......+++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt-~gLD~~~~~~l~~~l 187 (288)
T PRK13643 109 GPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPT-AGLDPKARIEMMQLF 187 (288)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc-cCCCHHHHHHHHHHH
Confidence 000000000 000000 0000 00113445668999999999999999999999999998 788888877766555
Q ss_pred HHhhhcCceEEEEecccChhHHHhhc
Q 012322 144 VNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
......+..+|+.|+.++ .+..+.
T Consensus 188 ~~l~~~g~til~vtHd~~--~~~~~~ 211 (288)
T PRK13643 188 ESIHQSGQTVVLVTHLMD--DVADYA 211 (288)
T ss_pred HHHHHCCCEEEEEecCHH--HHHHhC
Confidence 444333567777777553 344444
No 281
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.45 E-value=2.7e-07 Score=76.18 Aligned_cols=117 Identities=22% Similarity=0.395 Sum_probs=61.2
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcC-----CCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccC
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYT-----KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTS 92 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~-----~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 92 (466)
++++.++|.||+|+|||+++..+....... ....+.+..|.........+.+.+.++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 356788999999999999998888765321 23344455554445666777777777654322
Q ss_pred ccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 93 ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 93 ~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
-.+...+.+.+.....-....+|||||+|. ... ......++.+.. ..+.++|++.
T Consensus 69 ------~~~~~~l~~~~~~~l~~~~~~~lviDe~~~-l~~-~~~l~~l~~l~~--~~~~~vvl~G 123 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRRRVVLLVIDEADH-LFS-DEFLEFLRSLLN--ESNIKVVLVG 123 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHCTEEEEEEETTHH-HHT-HHHHHHHHHHTC--SCBEEEEEEE
T ss_pred ------cCCHHHHHHHHHHHHHhcCCeEEEEeChHh-cCC-HHHHHHHHHHHh--CCCCeEEEEE
Confidence 123333333332111111227999999994 213 333333455444 2355666544
No 282
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=6.4e-07 Score=82.21 Aligned_cols=143 Identities=20% Similarity=0.207 Sum_probs=84.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHH--------------HHHHHhCCccCCee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVAR--------------RVAQELGVRLGEEV 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~--------------~~~~~~~~~~~~~~ 81 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+.... .....+ .+.+..........
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~ 103 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDAT 103 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCC
Confidence 568999999999999999999999998776655433222111000 000000 01111100000000
Q ss_pred eee-------Eeecc---cc------CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 82 GYA-------IRFED---RT------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 82 g~~-------~~~~~---~~------~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
... ..... .. .......-++.|+.++..+....+.+++++++||+- ..+|......+++.+..
T Consensus 104 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~-~~LD~~~~~~l~~~l~~ 182 (236)
T cd03253 104 DEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEAT-SALDTHTEREIQAALRD 182 (236)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHH
Confidence 000 00000 00 001224468999999999999999999999999998 78998887776666655
Q ss_pred hhhcCceEEEEecccC
Q 012322 146 LRASKLKILITSATLD 161 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~ 161 (466)
... +..+|+.|+.++
T Consensus 183 ~~~-~~tiii~sh~~~ 197 (236)
T cd03253 183 VSK-GRTTIVIAHRLS 197 (236)
T ss_pred hcC-CCEEEEEcCCHH
Confidence 544 566777777553
No 283
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=4.2e-07 Score=85.02 Aligned_cols=144 Identities=25% Similarity=0.239 Sum_probs=84.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-H-----------------------HHHHHHHHH-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-A-----------------------VSVARRVAQ- 71 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~-----------------------~~~~~~~~~- 71 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+...+.... . ..+.+.+.-
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 126 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFG 126 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHH
Confidence 568999999999999999999999998766555433322111000 0 000010100
Q ss_pred --HhCCccC---CeeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 72 --ELGVRLG---EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 72 --~~~~~~~---~~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
..+.... ..+.... ...-....+..+.-+|.|+.++..+....+.+++++|+||+- ..+|......+.+.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt-~~LD~~~~~~l~~~l~~ 205 (269)
T cd03294 127 LEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAF-SALDPLIRREMQDELLR 205 (269)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHH
Confidence 0000000 0000000 000000012334458999999999999999999999999998 78998887776665555
Q ss_pred hhhc-CceEEEEecccC
Q 012322 146 LRAS-KLKILITSATLD 161 (466)
Q Consensus 146 ~~~~-~~~ii~~SAT~~ 161 (466)
.... +..+|+.|+.++
T Consensus 206 ~~~~~g~tiii~tH~~~ 222 (269)
T cd03294 206 LQAELQKTIVFITHDLD 222 (269)
T ss_pred HHHhcCCEEEEEeCCHH
Confidence 4432 467777777543
No 284
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=3e-07 Score=85.42 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=88.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHHH---HHHhCC----ccCCeeeee----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRV---AQELGV----RLGEEVGYA---- 84 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~~---~~~~~~----~~~~~~g~~---- 84 (466)
+.+|+.+.|.|++||||||++..+.+...+..|...+...+.... ..+..+.+ .+.... .+.....+.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~ 104 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPW 104 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchh
Confidence 568999999999999999999999998766655443332221110 00100100 010000 000000000
Q ss_pred -------Ee-ec-----------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 85 -------IR-FE-----------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 85 -------~~-~~-----------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
.. .. -....+....-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 105 LSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPT-TYLDINHQVELMRLMRE 183 (255)
T ss_pred hhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHH
Confidence 00 00 000113445568999999999999999999999999998 78888887776555555
Q ss_pred hhhcCceEEEEecccChhHHHhhc
Q 012322 146 LRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
....+..+|+.|+-++ .+.++.
T Consensus 184 l~~~~~tiii~tH~~~--~~~~~~ 205 (255)
T PRK11231 184 LNTQGKTVVTVLHDLN--QASRYC 205 (255)
T ss_pred HHHCCCEEEEEECCHH--HHHHhc
Confidence 4333567777777543 344444
No 285
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.45 E-value=6.6e-07 Score=83.71 Aligned_cols=143 Identities=19% Similarity=0.219 Sum_probs=84.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HH---HHHHHH---HHHhC----CccCCeeee--
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AV---SVARRV---AQELG----VRLGEEVGY-- 83 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~---~~~~~~---~~~~~----~~~~~~~g~-- 83 (466)
+..|+.+.|+||+||||||++..+.+...+..|...+...+.... .. ...+.+ .+... ..+.....+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 109 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPL 109 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHH
Confidence 568999999999999999999999998766555433322221000 00 000000 00000 000000000
Q ss_pred ------eE------------eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 84 ------AI------------RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 84 ------~~------------~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
.. .+.-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~ 188 (269)
T PRK11831 110 REHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPF-VGQDPITMGVLVKLISE 188 (269)
T ss_pred HHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHH
Confidence 00 000000112334458999999999998899999999999998 78898887776665555
Q ss_pred hhhc-CceEEEEeccc
Q 012322 146 LRAS-KLKILITSATL 160 (466)
Q Consensus 146 ~~~~-~~~ii~~SAT~ 160 (466)
.... +..+|+.|+.+
T Consensus 189 ~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 189 LNSALGVTCVVVSHDV 204 (269)
T ss_pred HHHhcCcEEEEEecCH
Confidence 4432 56788888754
No 286
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.45 E-value=8.7e-07 Score=81.40 Aligned_cols=144 Identities=18% Similarity=0.152 Sum_probs=85.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHH--------------HHHHHHhCCccCCe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVA--------------RRVAQELGVRLGEE 80 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~--------------~~~~~~~~~~~~~~ 80 (466)
.+..|+.+.|.||+||||||++..+++...+..|...+...+.... ..... ..+.+.........
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~ 104 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDA 104 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCC
Confidence 3568999999999999999999999998776665433322221100 00000 01111111000000
Q ss_pred eeeeE-------eecc---c------cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 81 VGYAI-------RFED---R------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 81 ~g~~~-------~~~~---~------~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
..... .... . ........-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~ 183 (238)
T cd03249 105 TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEAT-SALDAESEKLVQEALD 183 (238)
T ss_pred CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHH
Confidence 00000 0000 0 0011223458999999999988889999999999998 7899888777666665
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
... .+..+|+.|+.++
T Consensus 184 ~~~-~g~~vi~~sh~~~ 199 (238)
T cd03249 184 RAM-KGRTTIVIAHRLS 199 (238)
T ss_pred Hhc-CCCEEEEEeCCHH
Confidence 544 3667777776543
No 287
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.44 E-value=2.3e-07 Score=85.99 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=51.2
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
...-+|.|+.++..+....+.+++++|+||+- ..+|......+.+.+......+..+|+.|+.+ +.+.++.
T Consensus 141 ~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~--~~~~~~~ 211 (250)
T PRK11264 141 YPRRLSGGQQQRVAIARALAMRPEVILFDEPT-SALDPELVGEVLNTIRQLAQEKRTMVIVTHEM--SFARDVA 211 (250)
T ss_pred ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHhc
Confidence 34558899999999988889999999999998 78888877776555554443355666766644 3344444
No 288
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=4.9e-07 Score=83.81 Aligned_cols=150 Identities=21% Similarity=0.207 Sum_probs=86.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE-------------EeCchhHHH--HHHHHHHH---HHhCCccC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-------------VTQPRRVAA--VSVARRVA---QELGVRLG 78 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~-------------~~~p~~~l~--~~~~~~~~---~~~~~~~~ 78 (466)
+..|+.+.|.||+||||||++..+++...+..|...+ ++.....+. ..+.+.+. ...+....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM 103 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHH
Confidence 5689999999999999999999999987655543221 111100000 01111111 00010000
Q ss_pred C---eeee-eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceE
Q 012322 79 E---EVGY-AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKI 153 (466)
Q Consensus 79 ~---~~g~-~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~i 153 (466)
. .+.. .....-....+....-+|.|+.++..+....+.+++++++||+. ..+|......+.+.+..... .+..+
T Consensus 104 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~g~tv 182 (255)
T PRK11248 104 QRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF-GALDAFTREQMQTLLLKLWQETGKQV 182 (255)
T ss_pred HHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 0 0000 00000000012234458999999999998899999999999998 78999887776665555432 25677
Q ss_pred EEEecccChhHHHhhc
Q 012322 154 LITSATLDGEKVSKFF 169 (466)
Q Consensus 154 i~~SAT~~~~~~~~~~ 169 (466)
|+.|+-+ +.+..+.
T Consensus 183 iivsH~~--~~~~~~~ 196 (255)
T PRK11248 183 LLITHDI--EEAVFMA 196 (255)
T ss_pred EEEeCCH--HHHHHhC
Confidence 7777754 3444444
No 289
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.44 E-value=2.2e-07 Score=85.66 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=87.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHH-H---HHHhC----CccCCeeee---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARR-V---AQELG----VRLGEEVGY--- 83 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~-~---~~~~~----~~~~~~~g~--- 83 (466)
.+.+|+.+.|.||+||||||++..+.+...+..|...+...+.... ..+..++ + .+... .++.....+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 103 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALP 103 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhh
Confidence 3568999999999999999999999998766655433322221100 0000000 0 00000 000000000
Q ss_pred ----------eEe---e-----------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHH
Q 012322 84 ----------AIR---F-----------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL 139 (466)
Q Consensus 84 ----------~~~---~-----------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~ 139 (466)
... . .-....+..+.-.|.|+.++..+....+.+++++++||+. ..+|......+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt-~~LD~~~~~~l 182 (242)
T TIGR03411 104 RDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV-AGMTDEETEKT 182 (242)
T ss_pred cccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-cCCCHHHHHHH
Confidence 000 0 0000112345568999999999999999999999999998 78999887776
Q ss_pred HHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 140 VKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 140 l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
++.+..... +..+|+.|+.++ .+.++.
T Consensus 183 ~~~l~~~~~-~~tii~~sH~~~--~~~~~~ 209 (242)
T TIGR03411 183 AELLKSLAG-KHSVVVVEHDME--FVRSIA 209 (242)
T ss_pred HHHHHHHhc-CCEEEEEECCHH--HHHHhC
Confidence 665555443 567777777543 344444
No 290
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=3.6e-07 Score=85.70 Aligned_cols=150 Identities=16% Similarity=0.149 Sum_probs=87.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHHH---HH-----HhCCccCCeeeee---
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRV---AQ-----ELGVRLGEEVGYA--- 84 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~~---~~-----~~~~~~~~~~g~~--- 84 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+.... ..+....+ .+ .....+...+.+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 107 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVN 107 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHH
Confidence 578999999999999999999999998766555433222111000 00000000 00 0000000000000
Q ss_pred --Ee-------e-------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 85 --IR-------F-------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 85 --~~-------~-------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
.. . .-....+..+.-.+.|+.++..+....+.+++++++||+- ..+|......+++.+.+...
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~ 186 (274)
T PRK13647 108 MGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM-AYLDPRGQETLMEILDRLHN 186 (274)
T ss_pred cCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHH
Confidence 00 0 0000112334458999999999999999999999999998 78888887776666655543
Q ss_pred cCceEEEEecccChhHHHhhc
Q 012322 149 SKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 149 ~~~~ii~~SAT~~~~~~~~~~ 169 (466)
.+..+++.|+-++ .+.++.
T Consensus 187 ~g~tili~tH~~~--~~~~~~ 205 (274)
T PRK13647 187 QGKTVIVATHDVD--LAAEWA 205 (274)
T ss_pred CCCEEEEEeCCHH--HHHHhC
Confidence 3567788777654 344444
No 291
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=9.3e-07 Score=84.78 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=85.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHHHHHHhC---------CccCCeeee---
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVAQELG---------VRLGEEVGY--- 83 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~~~~~~~---------~~~~~~~g~--- 83 (466)
+..|+.+.|+|++||||||++..+++......|...+...+.... ..+. ..+....+ ......++.
T Consensus 38 i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~-~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~ 116 (327)
T PRK11308 38 LERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQ-KLLRQKIQIVFQNPYGSLNPRKKVGQILE 116 (327)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHH-HHHhCCEEEEEcCchhhcCCccCHHHHHH
Confidence 568999999999999999999999998766544433322221100 0000 00000000 000000000
Q ss_pred ---------e--------------EeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHH
Q 012322 84 ---------A--------------IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV 140 (466)
Q Consensus 84 ---------~--------------~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l 140 (466)
. ..... ...+....-+|.|+.++..++...+.+++++|+||+- ..+|......++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPt-s~LD~~~~~~i~ 194 (327)
T PRK11308 117 EPLLINTSLSAAERREKALAMMAKVGLRP-EHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPV-SALDVSVQAQVL 194 (327)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHCCCCh-HHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCC-ccCCHHHHHHHH
Confidence 0 00000 0011223458999999999999999999999999998 788988877766
Q ss_pred HHHHHhhhc-CceEEEEecccC
Q 012322 141 KRLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 141 ~~i~~~~~~-~~~ii~~SAT~~ 161 (466)
+.+.+.... +..+|+.|+-++
T Consensus 195 ~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 195 NLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH
Confidence 666555432 678888888654
No 292
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.9e-06 Score=83.48 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=84.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch------h----------HHH--HHHHHHHHHHh---C
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR------R----------VAA--VSVARRVAQEL---G 74 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~------~----------~l~--~~~~~~~~~~~---~ 74 (466)
.+..|+.+.+.||+||||||++..+++...+..|...+...+. + .+. ..+.+.+.-.. +
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~ 105 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRG 105 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcC
Confidence 3568999999999999999999999998776655433221110 0 000 00111110000 0
Q ss_pred CccC---Ceeee---eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 75 VRLG---EEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 75 ~~~~---~~~g~---~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
.... ..+.. ..... ...+....-+|.|+.++..+++....+++++++||+. ..+|......+.+.+.+...
T Consensus 106 ~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~-s~LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 106 MPKAEIEERVAEAARILELE--PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL-SNLDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred CCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 0000 00000 00000 0112233458999999999999999999999999998 78888876665555554433
Q ss_pred c-CceEEEEeccc
Q 012322 149 S-KLKILITSATL 160 (466)
Q Consensus 149 ~-~~~ii~~SAT~ 160 (466)
. +..+|+.|+.+
T Consensus 183 ~~g~tii~vTHd~ 195 (356)
T PRK11650 183 RLKTTSLYVTHDQ 195 (356)
T ss_pred hcCCEEEEEeCCH
Confidence 2 56788877754
No 293
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.44 E-value=5.6e-07 Score=82.63 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=85.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHH--------------HHHHHhCCccCCee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVAR--------------RVAQELGVRLGEEV 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~--------------~~~~~~~~~~~~~~ 81 (466)
+..|+.+.|.||+||||||++..+++...+..|...+...+.... .....+ .+.+........ .
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~-~ 103 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPG-M 103 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCC-C
Confidence 578999999999999999999999998776655433322221100 000000 001111000000 0
Q ss_pred ee-eE-------eeccc---------cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 82 GY-AI-------RFEDR---------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 82 g~-~~-------~~~~~---------~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
.. .. ..... ...+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~ 182 (237)
T cd03252 104 SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEAT-SALDYESEHAIMRNMH 182 (237)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHH
Confidence 00 00 00000 0011234568999999999999899999999999998 7899988877666666
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
+... +..+|+.|+.++
T Consensus 183 ~~~~-~~tiii~sH~~~ 198 (237)
T cd03252 183 DICA-GRTVIIIAHRLS 198 (237)
T ss_pred HhcC-CCEEEEEeCCHH
Confidence 5543 667777777554
No 294
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.44 E-value=2.1e-06 Score=80.26 Aligned_cols=151 Identities=19% Similarity=0.208 Sum_probs=86.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH----HH-------H-----------HHHHHHHH--
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----AA-------V-----------SVARRVAQ-- 71 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~----l~-------~-----------~~~~~~~~-- 71 (466)
.+.+|+.+.|+||+||||||++..+.+...+..|...+...+... .. . .+...+..
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 114 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPL 114 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHH
Confidence 357899999999999999999999999887665543322111000 00 0 00000000
Q ss_pred HhCCccCC-----eeeeeE-eecc-ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 72 ELGVRLGE-----EVGYAI-RFED-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 72 ~~~~~~~~-----~~g~~~-~~~~-~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
........ .+.... ...- ....+..+.-+|.|+.++..+....+.+++++++||+. ..+|......+.+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~ 193 (267)
T PRK15112 115 RLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEAL-ASLDMSMRSQLINLML 193 (267)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCc-ccCCHHHHHHHHHHHH
Confidence 00000000 000000 0000 00012234558999999999998889999999999998 7889888777655555
Q ss_pred Hhhhc-CceEEEEecccChhHHHhhc
Q 012322 145 NLRAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 145 ~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
+.... +..+|+.|+.+ +.+..+.
T Consensus 194 ~~~~~~g~tviivsH~~--~~~~~~~ 217 (267)
T PRK15112 194 ELQEKQGISYIYVTQHL--GMMKHIS 217 (267)
T ss_pred HHHHHcCcEEEEEeCCH--HHHHHhc
Confidence 54432 45677766654 3444444
No 295
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.43 E-value=2.6e-07 Score=96.14 Aligned_cols=143 Identities=24% Similarity=0.292 Sum_probs=88.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-HHHHHH---HH---hCCccCCeeeeeEee--
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARRVA---QE---LGVRLGEEVGYAIRF-- 87 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-~~~~~~---~~---~~~~~~~~~g~~~~~-- 87 (466)
+..|+.+.++|||||||||++..++....+..|...+...+.+..... ..+.++ +. ++.++...+.+....
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at 431 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDAT 431 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCC
Confidence 678999999999999999999999998888666554434443332221 111111 00 000111111110000
Q ss_pred -c---------------cccCc--cceE----EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 88 -E---------------DRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 88 -~---------------~~~~~--~~~i----~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
+ ...+. ++.+ .-.|.|+.++..+++..+.+..++|+|||. ..+|......+.+.+.+
T Consensus 432 ~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaT-SalD~~tE~~I~~~l~~ 510 (567)
T COG1132 432 DEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEAT-SALDTETEALIQDALKK 510 (567)
T ss_pred HHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccc-cccCHHhHHHHHHHHHH
Confidence 0 00011 1222 237899999999999999999999999999 78888887776666654
Q ss_pred hhhcCceEEEEecccC
Q 012322 146 LRASKLKILITSATLD 161 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~ 161 (466)
..+ +..+++.++-++
T Consensus 511 l~~-~rT~iiIaHRls 525 (567)
T COG1132 511 LLK-GRTTLIIAHRLS 525 (567)
T ss_pred Hhc-CCEEEEEeccHh
Confidence 553 546666777653
No 296
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.43 E-value=2.5e-07 Score=84.37 Aligned_cols=142 Identities=17% Similarity=0.220 Sum_probs=84.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhc-----CcCCCcEEEEeCchhHH---HHHHHHH--------------HHHHh
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH-----GYTKSGIIGVTQPRRVA---AVSVARR--------------VAQEL 73 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~-----~~~~~~~i~~~~p~~~l---~~~~~~~--------------~~~~~ 73 (466)
.+.+|+.+.|.||+||||||++..+++.. .+..|...+...+.... .....+. +.+..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 101 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNV 101 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHH
Confidence 35689999999999999999999999987 55555433322221100 0000000 00100
Q ss_pred CCccCCeeeeeEe------e----cc-ccC--ccce--EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHH
Q 012322 74 GVRLGEEVGYAIR------F----ED-RTS--ERTL--IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLG 138 (466)
Q Consensus 74 ~~~~~~~~g~~~~------~----~~-~~~--~~~~--i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~ 138 (466)
..... ..+.... . +. ... .... ..-.|.|+.++..+....+.+++++++||+- ..+|......
T Consensus 102 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~ 179 (227)
T cd03260 102 AYGLR-LHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPT-SALDPISTAK 179 (227)
T ss_pred HhHHH-hcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHH
Confidence 00000 0000000 0 00 000 0122 3568999999999999899999999999998 7899888777
Q ss_pred HHHHHHHhhhcCceEEEEeccc
Q 012322 139 LVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 139 ~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
+.+.+.+... +..+|+.|+.+
T Consensus 180 l~~~l~~~~~-~~tii~~sH~~ 200 (227)
T cd03260 180 IEELIAELKK-EYTIVIVTHNM 200 (227)
T ss_pred HHHHHHHHhh-CcEEEEEeccH
Confidence 6666665554 35667766654
No 297
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.6e-07 Score=88.44 Aligned_cols=142 Identities=20% Similarity=0.198 Sum_probs=94.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-HHHHH--------------HHHhCCccCC-
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARRV--------------AQELGVRLGE- 79 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-~~~~~--------------~~~~~~~~~~- 79 (466)
.++.|+.+.|.|+|||||||++..+.+...+++|...+-..|...+-.+ +.+.+ .+.+-.....
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~A 439 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCC
Confidence 4678999999999999999999999988888878776666554444332 11111 1111100000
Q ss_pred ----------eeeeeE-------eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHH
Q 012322 80 ----------EVGYAI-------RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (466)
Q Consensus 80 ----------~~g~~~-------~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~ 142 (466)
.+|... ..+.+..+. =.-.|.|...|+.+++..+++..++++||+. -++|..--..++..
T Consensus 440 sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~--G~~LSGGE~rRLAlAR~LL~dapl~lLDEPT-egLD~~TE~~vL~l 516 (573)
T COG4987 440 SDEELWAALQQVGLEKLLESAPDGLNTWLGEG--GRRLSGGERRRLALARALLHDAPLWLLDEPT-EGLDPITERQVLAL 516 (573)
T ss_pred CHHHHHHHHHHcCHHHHHHhChhhhhchhccC--CCcCCchHHHHHHHHHHHHcCCCeEEecCCc-ccCChhhHHHHHHH
Confidence 000000 000000000 0116889999999999999999999999999 58888888888888
Q ss_pred HHHhhhcCceEEEEecccC
Q 012322 143 LVNLRASKLKILITSATLD 161 (466)
Q Consensus 143 i~~~~~~~~~ii~~SAT~~ 161 (466)
+..... +..+++.|+-+.
T Consensus 517 l~~~~~-~kTll~vTHrL~ 534 (573)
T COG4987 517 LFEHAE-GKTLLMVTHRLR 534 (573)
T ss_pred HHHHhc-CCeEEEEecccc
Confidence 877775 888999998874
No 298
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.43 E-value=1.8e-06 Score=77.21 Aligned_cols=142 Identities=16% Similarity=0.190 Sum_probs=84.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcE-----EEEeCchhHHH-HHHHHHHH--------------HHhCC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGVTQPRRVAA-VSVARRVA--------------QELGV 75 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~-----i~~~~p~~~l~-~~~~~~~~--------------~~~~~ 75 (466)
.+.+|+.+.|.||+||||||++..+++...+..|.. +.++.....+. ..+.+.+. +..+.
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l 106 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACAL 106 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCc
Confidence 356899999999999999999999999877766643 23332211110 01111110 00000
Q ss_pred ccCCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH-hhhcCceEE
Q 012322 76 RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN-LRASKLKIL 154 (466)
Q Consensus 76 ~~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~-~~~~~~~ii 154 (466)
. ..+.... ............-.+.|+.++..+......+++++++||+- ..+|.+....++..++. ....+..+|
T Consensus 107 ~--~~~~~~~-~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~ll~~~~~~~~tvi 182 (204)
T cd03250 107 E--PDLEILP-DGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL-SAVDAHVGRHIFENCILGLLLNNKTRI 182 (204)
T ss_pred H--HHHHhcc-CcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHhccCCCEEE
Confidence 0 0000000 00000001123347999999999999999999999999998 78888877766665443 223246777
Q ss_pred EEecccC
Q 012322 155 ITSATLD 161 (466)
Q Consensus 155 ~~SAT~~ 161 (466)
+.|+.++
T Consensus 183 ~~sh~~~ 189 (204)
T cd03250 183 LVTHQLQ 189 (204)
T ss_pred EEeCCHH
Confidence 7777653
No 299
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.43 E-value=1.8e-07 Score=90.77 Aligned_cols=143 Identities=19% Similarity=0.210 Sum_probs=83.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-----HHHHHHHH---HHHhC----CccCCeeeee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-----AVSVARRV---AQELG----VRLGEEVGYA 84 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-----~~~~~~~~---~~~~~----~~~~~~~g~~ 84 (466)
+.+|+.+.|.||+||||||++..+++...+..|...+...+.... .....+.+ .+... ..+...+.+.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 100 (352)
T PRK11144 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYG 100 (352)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhh
Confidence 568999999999999999999999998766555432211110000 00000000 00000 0000000000
Q ss_pred Ee-------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-C
Q 012322 85 IR-------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-K 150 (466)
Q Consensus 85 ~~-------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~ 150 (466)
.. ..-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+...... +
T Consensus 101 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt-s~LD~~~~~~l~~~L~~l~~~~g 179 (352)
T PRK11144 101 MAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL-ASLDLPRKRELLPYLERLAREIN 179 (352)
T ss_pred hhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcC
Confidence 00 00000112344568999999999999999999999999998 788888776655555544432 4
Q ss_pred ceEEEEeccc
Q 012322 151 LKILITSATL 160 (466)
Q Consensus 151 ~~ii~~SAT~ 160 (466)
..+|+.|+.+
T Consensus 180 ~tii~vTHd~ 189 (352)
T PRK11144 180 IPILYVSHSL 189 (352)
T ss_pred CeEEEEecCH
Confidence 6788877765
No 300
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=3.9e-07 Score=87.11 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=51.4
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
...-+|.|+.++..+....+.+++++++||+- ..+|......+++.+......+..+|+.|+.++
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPt-sgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~ 237 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPT-AGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 34558999999999999999999999999998 789988877766666554433667888777654
No 301
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=7.6e-07 Score=81.51 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=84.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHH-----------------------HHHHHHH
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVS-----------------------VARRVAQ 71 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~-----------------------~~~~~~~ 71 (466)
.+..|+.+.|.||+||||||++..+++...+..|...+...+.... ..+ +.+.+.-
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 110 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAM 110 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHH
Confidence 3578999999999999999999999998765555433222221000 000 0000000
Q ss_pred --Hh-CCccCC---eeee-eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 72 --EL-GVRLGE---EVGY-AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 72 --~~-~~~~~~---~~g~-~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
.. +..... .+.. .....-....+....-.|.|+.++..+....+.+++++++||+- ..+|......+.+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~ 189 (233)
T PRK11629 111 PLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPT-GNLDARNADSIFQLLG 189 (233)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHH
Confidence 00 000000 0000 00000000012234458899999999988889999999999998 7888888777665555
Q ss_pred Hhhh-cCceEEEEecccC
Q 012322 145 NLRA-SKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~-~~~~ii~~SAT~~ 161 (466)
.... .+..+|+.|+.++
T Consensus 190 ~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 190 ELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred HHHHhCCCEEEEEeCCHH
Confidence 5433 2567888888654
No 302
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=3.2e-07 Score=86.73 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=88.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh------------------------HH-HHHHHHHHH-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR------------------------VA-AVSVARRVA- 70 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~------------------------~l-~~~~~~~~~- 70 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+...+.. .+ ...+.+.+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~ 109 (290)
T PRK13634 30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICF 109 (290)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHH
Confidence 5789999999999999999999999987665554333222110 00 001111111
Q ss_pred --HHhCCccCC---eeeeeE-eeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 71 --QELGVRLGE---EVGYAI-RFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 71 --~~~~~~~~~---~~g~~~-~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
...+..... .+.... ...-. ...+..+.-.|.|+.++..++...+.+++++|+||+- ..+|......+++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt-~~LD~~~~~~l~~~L 188 (290)
T PRK13634 110 GPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT-AGLDPKGRKEMMEMF 188 (290)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHH
Confidence 000000000 000000 00000 0113445668999999999999999999999999998 789988877766655
Q ss_pred HHhhhc-CceEEEEecccChhHHHhhc
Q 012322 144 VNLRAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 144 ~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
...... +..+|+.|+-++ .+..+.
T Consensus 189 ~~l~~~~g~tviiitHd~~--~~~~~~ 213 (290)
T PRK13634 189 YKLHKEKGLTTVLVTHSME--DAARYA 213 (290)
T ss_pred HHHHHhcCCEEEEEeCCHH--HHHHhC
Confidence 544332 567777777543 344444
No 303
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=6.5e-07 Score=83.87 Aligned_cols=144 Identities=20% Similarity=0.263 Sum_probs=84.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-------HHHH------H----------HHHHHH---
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-------VAAV------S----------VARRVA--- 70 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-------~l~~------~----------~~~~~~--- 70 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+...+.. .... | +.+.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~ 103 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSL 103 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHH
Confidence 5689999999999999999999999887665554333221110 0000 0 000000
Q ss_pred HHhCCccCCe---eeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 71 QELGVRLGEE---VGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 71 ~~~~~~~~~~---~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
...+...... +.... ...-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~ 182 (271)
T PRK13638 104 RNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPT-AGLDPAGRTQMIAIIRRI 182 (271)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHH
Confidence 0000000000 00000 000000012345568999999999999999999999999998 788888877765555554
Q ss_pred hhcCceEEEEecccC
Q 012322 147 RASKLKILITSATLD 161 (466)
Q Consensus 147 ~~~~~~ii~~SAT~~ 161 (466)
...+..+|+.|+.++
T Consensus 183 ~~~g~tii~vtH~~~ 197 (271)
T PRK13638 183 VAQGNHVIISSHDID 197 (271)
T ss_pred HHCCCEEEEEeCCHH
Confidence 433566777777553
No 304
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.42 E-value=2.6e-06 Score=79.79 Aligned_cols=151 Identities=24% Similarity=0.293 Sum_probs=86.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-HHHHHHHHHhC------CccCCee-------
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVAQELG------VRLGEEV------- 81 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-~~~~~~~~~~~------~~~~~~~------- 81 (466)
.+..|+.+.|+||+||||||++..+.+...+..|...+...+...... .....+.+... ..+....
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~ 108 (272)
T PRK15056 29 TVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGH 108 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccc
Confidence 356899999999999999999999999876655543322222110000 00000000000 0000000
Q ss_pred -ee-eE--e-ecc-----------ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 82 -GY-AI--R-FED-----------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 82 -g~-~~--~-~~~-----------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
+. .. . ... ....+..+.-.|.|+.++..+....+.+++++++||+- ..+|......+.+.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt-~~LD~~~~~~l~~~L~~ 187 (272)
T PRK15056 109 MGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPF-TGVDVKTEARIISLLRE 187 (272)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHH
Confidence 00 00 0 000 00012334458999999999988889999999999998 78888887776555555
Q ss_pred hhhcCceEEEEecccChhHHHhhc
Q 012322 146 LRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
....+..+|+.|+.+ +.+.++.
T Consensus 188 ~~~~g~tviivsH~~--~~~~~~~ 209 (272)
T PRK15056 188 LRDEGKTMLVSTHNL--GSVTEFC 209 (272)
T ss_pred HHhCCCEEEEEeCCH--HHHHHhC
Confidence 443356677777754 3344444
No 305
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.42 E-value=2.7e-06 Score=81.89 Aligned_cols=127 Identities=20% Similarity=0.267 Sum_probs=76.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCC-cEE-EEeC-chhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS-GII-GVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSE 93 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~-~~i-~~~~-p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 93 (466)
+.++++++++||||+||||++..+........+ .++ ++.. ..+..+.++.+.+++.++..+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--------------- 198 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--------------- 198 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE---------------
Confidence 345789999999999999888877765433222 333 3332 3466677777777777764321
Q ss_pred cceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHH
Q 012322 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVS 166 (466)
Q Consensus 94 ~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~ 166 (466)
.+.+++.+...+. .+.+.++|+||++- +........+.+..+.........++++|||...+.+.
T Consensus 199 ----~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 199 ----AVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred ----ecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 1112222322222 24567999999998 44433445554555543333345688899998665433
No 306
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.42 E-value=3.2e-07 Score=84.09 Aligned_cols=144 Identities=18% Similarity=0.173 Sum_probs=83.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE-----------------EeCch--hH----HHHHHHHHHHHH
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-----------------VTQPR--RV----AAVSVARRVAQE 72 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~-----------------~~~p~--~~----l~~~~~~~~~~~ 72 (466)
.+..|+.+.|.||+||||||++..+++...+..|...+ ++.+. .. .+.+........
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~ 122 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAI 122 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHH
Confidence 35689999999999999999999999877655443221 11100 00 011110000000
Q ss_pred hCCccCC---eeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 73 LGVRLGE---EVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 73 ~~~~~~~---~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
.+..... .+.... ...-....+..+.-++.|+.++..+....+.+++++++||+- ..+|......+.+.+.+...
T Consensus 123 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~ 201 (236)
T cd03267 123 YDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT-IGLDVVAQENIRNFLKEYNR 201 (236)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-CCCCHHHHHHHHHHHHHHHh
Confidence 0100000 000000 000000112334558999999999888899999999999998 78999887776666655443
Q ss_pred c-CceEEEEeccc
Q 012322 149 S-KLKILITSATL 160 (466)
Q Consensus 149 ~-~~~ii~~SAT~ 160 (466)
. +..+|+.|+-+
T Consensus 202 ~~~~tiiivsH~~ 214 (236)
T cd03267 202 ERGTTVLLTSHYM 214 (236)
T ss_pred cCCCEEEEEecCH
Confidence 2 45677766654
No 307
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.42 E-value=4.6e-07 Score=86.95 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=86.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH----HHHHHH---HHH----hC--CccCCeeee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV----SVARRV---AQE----LG--VRLGEEVGY 83 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~----~~~~~~---~~~----~~--~~~~~~~g~ 83 (466)
+.+|+.+.|+|++||||||++..+++......|...+-..+...+.. .....+ .+. +. .++...+.+
T Consensus 44 i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~ 123 (331)
T PRK15079 44 LYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAE 123 (331)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHH
Confidence 57899999999999999999999999876655543332222110000 000000 000 00 000000000
Q ss_pred -------eEe--------------ecc-ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 84 -------AIR--------------FED-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 84 -------~~~--------------~~~-~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
... ..- ....+....-+|.|+.++..++...+.+++++|+||+- ..+|......+++
T Consensus 124 ~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPt-s~LD~~~~~~i~~ 202 (331)
T PRK15079 124 PLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPV-SALDVSIQAQVVN 202 (331)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHH
Confidence 000 000 00012333458999999999999999999999999998 7899888777666
Q ss_pred HHHHhhhc-CceEEEEecccC
Q 012322 142 RLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 142 ~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.+...... +..+|+.|+.++
T Consensus 203 lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 203 LLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred HHHHHHHHcCCEEEEEeCCHH
Confidence 66554432 678888888764
No 308
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.42 E-value=5.5e-06 Score=80.49 Aligned_cols=128 Identities=22% Similarity=0.268 Sum_probs=77.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCcC---CCcEE--EEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCcc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHGYT---KSGII--GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~~~---~~~~i--~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (466)
+.+++++||||+||||.+..++...... .+.++ +..-+.|..+.++.+.+++..+..+ .+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~------------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KA------------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--Ee-------------
Confidence 4578999999999997776666544321 23333 3344567777777777777665532 11
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC-ceEEEEecccChhHHHhhcC
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK-LKILITSATLDGEKVSKFFS 170 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~-~~ii~~SAT~~~~~~~~~~~ 170 (466)
.-++..+...+. .+.++++|+||++. ++........-++.++...... -.++.+|||...+.+.+.+.
T Consensus 239 ----~~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 239 ----IESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred ----eCcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 113344444332 23678999999999 5543322333355555543323 47889999997766665543
No 309
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.42 E-value=4.7e-07 Score=79.28 Aligned_cols=141 Identities=23% Similarity=0.282 Sum_probs=84.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch-hHHHHHHHH--------------HHHHHhCCccCCe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVAR--------------RVAQELGVRLGEE 80 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~-~~l~~~~~~--------------~~~~~~~~~~~~~ 80 (466)
.+..|+.+.+.|+||+||||++..+++......|...+-..+. +....+.++ ++.-+-+...+..
T Consensus 25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~ 104 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY 104 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence 3578999999999999999999999998877655544433321 111111111 1100001111100
Q ss_pred eeee----Ee-ec--------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 81 VGYA----IR-FE--------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 81 ~g~~----~~-~~--------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
.... .. .+ -+...+..---+|.|.-+.+.+.+..+.+++++++||.- -.+.+.....+.+.+....
T Consensus 105 ~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs-~GLaP~iv~~I~~~i~~l~ 183 (237)
T COG0410 105 ARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS-EGLAPKIVEEIFEAIKELR 183 (237)
T ss_pred cccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCc-cCcCHHHHHHHHHHHHHHH
Confidence 0000 00 00 000011222347899999999999999999999999998 5788888777766666665
Q ss_pred hc-CceEEEEe
Q 012322 148 AS-KLKILITS 157 (466)
Q Consensus 148 ~~-~~~ii~~S 157 (466)
.. ...+++.-
T Consensus 184 ~~~g~tIlLVE 194 (237)
T COG0410 184 KEGGMTILLVE 194 (237)
T ss_pred HcCCcEEEEEe
Confidence 43 34566543
No 310
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=3.2e-07 Score=83.91 Aligned_cols=151 Identities=21% Similarity=0.257 Sum_probs=86.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH--HH-------H---HHH--HHHHHhCCccCCee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA--AV-------S---VAR--RVAQELGVRLGEEV 81 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l--~~-------~---~~~--~~~~~~~~~~~~~~ 81 (466)
.+..|+.+.|+||+||||||++..+.+...+..|...+...+.... .. | ... .+.+..........
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 100 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL 100 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc
Confidence 3568999999999999999999999998766555432221111000 00 0 000 00111100000000
Q ss_pred eeeEe-----------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-
Q 012322 82 GYAIR-----------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS- 149 (466)
Q Consensus 82 g~~~~-----------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~- 149 (466)
..... ..-....+..+.-.+.|+.++..+....+.+++++++||+. ..+|......+.+.+......
T Consensus 101 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~-~gLD~~~~~~~~~~l~~~~~~~ 179 (232)
T PRK10771 101 KLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPF-SALDPALRQEMLTLVSQVCQER 179 (232)
T ss_pred CCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhc
Confidence 00000 00000112344568999999999998899999999999998 788988877766655554332
Q ss_pred CceEEEEecccChhHHHhhc
Q 012322 150 KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~~~ 169 (466)
+..+|+.|+-++ .+..+.
T Consensus 180 ~~tiii~sH~~~--~~~~~~ 197 (232)
T PRK10771 180 QLTLLMVSHSLE--DAARIA 197 (232)
T ss_pred CCEEEEEECCHH--HHHHhC
Confidence 456777666543 344444
No 311
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.42 E-value=1.8e-06 Score=78.38 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=84.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHHHHHH--------------HHHHHhCCccCCe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVAR--------------RVAQELGVRLGEE 80 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~~~~~--------------~~~~~~~~~~~~~ 80 (466)
.+..|+.+.|+||+||||||++..+.+...+..|...+...+... ...+..+ .+.+..... ..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~--~~ 103 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPF--GE 103 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcC--CC
Confidence 356899999999999999999999999877665543332222110 0000000 011111000 00
Q ss_pred eeee--------Eeecccc---------CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 81 VGYA--------IRFEDRT---------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 81 ~g~~--------~~~~~~~---------~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
.... ....... .....+.-.+.|+.++..+....+.+++++++||+- ..+|......+.+.+
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l 182 (221)
T cd03244 104 YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEAT-ASVDPETDALIQKTI 182 (221)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHH
Confidence 0000 0000000 001234458899999999999999999999999998 788888777755555
Q ss_pred HHhhhcCceEEEEecccC
Q 012322 144 VNLRASKLKILITSATLD 161 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~~ 161 (466)
.+... +..+|+.|+.++
T Consensus 183 ~~~~~-~~tii~~sh~~~ 199 (221)
T cd03244 183 REAFK-DCTVLTIAHRLD 199 (221)
T ss_pred HHhcC-CCEEEEEeCCHH
Confidence 55443 566777777543
No 312
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.42 E-value=5.2e-06 Score=70.64 Aligned_cols=139 Identities=23% Similarity=0.226 Sum_probs=83.3
Q ss_pred HHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc--------------EEEEeC-----chhHHHHHHHHHHHHHhCC
Q 012322 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG--------------IIGVTQ-----PRRVAAVSVARRVAQELGV 75 (466)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~--------------~i~~~~-----p~~~l~~~~~~~~~~~~~~ 75 (466)
-.+.+|+.+++.||+||||||++..+.+...+..|. +-++-+ |..-....++--+ +..|+
T Consensus 26 L~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL-~l~Gi 104 (259)
T COG4525 26 LTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGL-QLRGI 104 (259)
T ss_pred eeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHH-HhcCC
Confidence 357899999999999999999999999987665433 222222 2222222211111 11111
Q ss_pred c----------cCCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHH---HHHH
Q 012322 76 R----------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLG---LVKR 142 (466)
Q Consensus 76 ~----------~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~---~l~~ 142 (466)
. ....+|.. ......|.-+|.|+.++.-+++...-+++++.+||.- -.+|.-.... ++-.
T Consensus 105 ~k~~R~~~a~q~l~~VgL~------~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf-gAlDa~tRe~mQelLld 177 (259)
T COG4525 105 EKAQRREIAHQMLALVGLE------GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF-GALDALTREQMQELLLD 177 (259)
T ss_pred CHHHHHHHHHHHHHHhCcc------cccccceEeecchHHHHHHHHHHhhcCcceEeecCch-hhHHHHHHHHHHHHHHH
Confidence 0 01112210 1124557779999999999999999999999999976 3344332222 2222
Q ss_pred HHHhhhcCceEEEEecccChh
Q 012322 143 LVNLRASKLKILITSATLDGE 163 (466)
Q Consensus 143 i~~~~~~~~~ii~~SAT~~~~ 163 (466)
+-+. .+.+++++|+.+...
T Consensus 178 lw~~--tgk~~lliTH~ieEA 196 (259)
T COG4525 178 LWQE--TGKQVLLITHDIEEA 196 (259)
T ss_pred HHHH--hCCeEEEEeccHHHH
Confidence 2222 377899999987643
No 313
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=2.2e-07 Score=85.00 Aligned_cols=150 Identities=16% Similarity=0.170 Sum_probs=87.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH----------------HH--HHHHHHHH---HHhCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------AA--VSVARRVA---QELGV 75 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~----------------l~--~~~~~~~~---~~~~~ 75 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+...+... .. ..+...+. ...+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~ 102 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKL 102 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCC
Confidence 57899999999999999999999999877655543222111100 00 00111110 00000
Q ss_pred ccC---CeeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-C
Q 012322 76 RLG---EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-K 150 (466)
Q Consensus 76 ~~~---~~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~ 150 (466)
... ....... ...-....+....-.+.|+.++..+....+.+.+++++||+. ..+|......+.+.+...... +
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~~~ 181 (232)
T cd03300 103 PKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL-GALDLKLRKDMQLELKRLQKELG 181 (232)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcC
Confidence 000 0000000 000000112334558999999999999999999999999999 789988877765555554432 5
Q ss_pred ceEEEEecccChhHHHhhc
Q 012322 151 LKILITSATLDGEKVSKFF 169 (466)
Q Consensus 151 ~~ii~~SAT~~~~~~~~~~ 169 (466)
..+++.|+.+. .+.++.
T Consensus 182 ~tiii~sh~~~--~~~~~~ 198 (232)
T cd03300 182 ITFVFVTHDQE--EALTMS 198 (232)
T ss_pred CEEEEEeCCHH--HHHHhc
Confidence 67788777553 344444
No 314
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.41 E-value=1.6e-06 Score=71.86 Aligned_cols=144 Identities=19% Similarity=0.155 Sum_probs=89.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh----HHHHHHHHHHHHHhCCccCCeeeeeEeecc--
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR----VAAVSVARRVAQELGVRLGEEVGYAIRFED-- 89 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~----~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~-- 89 (466)
++..|+...|.||+||||||++.++.....++.|...+-..+.. ...+|...++++.. -..+.++..+..+-.
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~p-aLfg~tVeDNlifP~~~ 103 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP-ALFGDTVEDNLIFPWQI 103 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCc-cccccchhhccccchHH
Confidence 45789999999999999999999999988888776665555432 33444445444321 112222222221110
Q ss_pred ---ccC-----------------ccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh-h
Q 012322 90 ---RTS-----------------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-A 148 (466)
Q Consensus 90 ---~~~-----------------~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~-~ 148 (466)
+.. -..++.-++.|..++..+.+...-.++++.+||.. ..+|......+-..+.+.. +
T Consensus 104 r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T-sALD~~nkr~ie~mi~~~v~~ 182 (223)
T COG4619 104 RNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT-SALDESNKRNIEEMIHRYVRE 182 (223)
T ss_pred hccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch-hhcChhhHHHHHHHHHHHhhh
Confidence 000 12456668889888888766666678999999987 5666655444323333332 3
Q ss_pred cCceEEEEecccC
Q 012322 149 SKLKILITSATLD 161 (466)
Q Consensus 149 ~~~~ii~~SAT~~ 161 (466)
.+..++.+|+..+
T Consensus 183 q~vAv~WiTHd~d 195 (223)
T COG4619 183 QNVAVLWITHDKD 195 (223)
T ss_pred hceEEEEEecChH
Confidence 4677777777644
No 315
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.41 E-value=4.5e-06 Score=75.93 Aligned_cols=144 Identities=19% Similarity=0.154 Sum_probs=84.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeC----ch-hHHHHHH----HHHH---HHHhCCc----cCC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ----PR-RVAAVSV----ARRV---AQELGVR----LGE 79 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~----p~-~~l~~~~----~~~~---~~~~~~~----~~~ 79 (466)
.+.+|+.+.|.||+||||||++..+++...+..|...+... +. .....+. ...+ .+..... +..
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 109 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALE 109 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHH
Confidence 35789999999999999999999999987665554333210 10 0000000 0000 0000000 000
Q ss_pred e-------eeeeE-e-----------ecccc-CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHH
Q 012322 80 E-------VGYAI-R-----------FEDRT-SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL 139 (466)
Q Consensus 80 ~-------~g~~~-~-----------~~~~~-~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~ 139 (466)
. .+... . +.-.. ..+..+.-.+.|+.++..+....+.+++++++||+- ..+|......+
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~l 188 (224)
T TIGR02324 110 VVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPT-ASLDAANRQVV 188 (224)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHH
Confidence 0 00000 0 00000 012245558999999999988889999999999998 78888887776
Q ss_pred HHHHHHhhhcCceEEEEeccc
Q 012322 140 VKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 140 l~~i~~~~~~~~~ii~~SAT~ 160 (466)
.+.+.+....+..+++.|+.+
T Consensus 189 ~~~l~~~~~~g~tii~vsH~~ 209 (224)
T TIGR02324 189 VELIAEAKARGAALIGIFHDE 209 (224)
T ss_pred HHHHHHHHhcCCEEEEEeCCH
Confidence 665555443356778877764
No 316
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=2.8e-07 Score=83.19 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=82.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-----HHHHHHHH---HHHhCC----ccCCeeee-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-----AVSVARRV---AQELGV----RLGEEVGY- 83 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-----~~~~~~~~---~~~~~~----~~~~~~g~- 83 (466)
+.+ +.+.|.||+||||||++..+++...+..|...+...+.... .....+.+ .+.... .+.....+
T Consensus 21 i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 99 (214)
T cd03297 21 LNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFG 99 (214)
T ss_pred Ecc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHH
Confidence 467 89999999999999999999998766555433222111000 00000000 000000 00000000
Q ss_pred -eE---------------eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 84 -AI---------------RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 84 -~~---------------~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
.. .+.-....+....-+|.|+.++..+....+.+++++++||+. ..+|......+.+.+....
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~ 178 (214)
T cd03297 100 LKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPF-SALDRALRLQLLPELKQIK 178 (214)
T ss_pred HhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHH
Confidence 00 000000012344568999999999988899999999999998 7888888777665555543
Q ss_pred hc-CceEEEEecccC
Q 012322 148 AS-KLKILITSATLD 161 (466)
Q Consensus 148 ~~-~~~ii~~SAT~~ 161 (466)
.. +..+|+.|+-++
T Consensus 179 ~~~~~tiii~sH~~~ 193 (214)
T cd03297 179 KNLNIPVIFVTHDLS 193 (214)
T ss_pred HHcCcEEEEEecCHH
Confidence 32 456777777543
No 317
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=5.2e-07 Score=84.44 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=84.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHHHHHHHHH---HH-----hCCccCC-------e
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRVA---QE-----LGVRLGE-------E 80 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~~~~~~~~---~~-----~~~~~~~-------~ 80 (466)
+.+|+.+.|.||+||||||++..+++...+..|...+...+... ...+..+.++ +. .+..+.. .
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~ 111 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLEN 111 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHh
Confidence 56899999999999999999999999876655543322211100 0000000000 00 0000000 0
Q ss_pred eeee------------EeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 81 VGYA------------IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 81 ~g~~------------~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
.+.. ....-....+..+.-.|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+...
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~ 190 (269)
T PRK13648 112 HAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEAT-SMLDPDARQNLLDLVRKVKS 190 (269)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 0000 0000000112344568999999999999999999999999998 78898887776665555433
Q ss_pred c-CceEEEEecccC
Q 012322 149 S-KLKILITSATLD 161 (466)
Q Consensus 149 ~-~~~ii~~SAT~~ 161 (466)
. +..+|+.|+.++
T Consensus 191 ~~~~tiiivtH~~~ 204 (269)
T PRK13648 191 EHNITIISITHDLS 204 (269)
T ss_pred hcCCEEEEEecCch
Confidence 2 567777777654
No 318
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=3e-06 Score=79.82 Aligned_cols=151 Identities=21% Similarity=0.200 Sum_probs=87.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh------------------------HHH-HHHHHHHH
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR------------------------VAA-VSVARRVA 70 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~------------------------~l~-~~~~~~~~ 70 (466)
.+..|+.+.|.||+||||||++..+.+...+..|...+...+.. .+. ..+.+.+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~ 108 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVA 108 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHH
Confidence 35689999999999999999999999987655544322221110 000 00111110
Q ss_pred ---HHhCCccCC---eeeeeE-eeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHH
Q 012322 71 ---QELGVRLGE---EVGYAI-RFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (466)
Q Consensus 71 ---~~~~~~~~~---~~g~~~-~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~ 142 (466)
...+..... .+.... ...-. ...+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~ 187 (280)
T PRK13649 109 FGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPT-AGLDPKGRKELMTL 187 (280)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHH
Confidence 000000000 000000 00000 0113345568999999999999899999999999998 78888887776666
Q ss_pred HHHhhhcCceEEEEecccChhHHHhhc
Q 012322 143 LVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 143 i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
+......+..+|+.|+-+ +.+..+.
T Consensus 188 l~~~~~~~~tiiivsH~~--~~~~~~~ 212 (280)
T PRK13649 188 FKKLHQSGMTIVLVTHLM--DDVANYA 212 (280)
T ss_pred HHHHHHCCCEEEEEeccH--HHHHHhC
Confidence 655443356677777754 3344443
No 319
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.41 E-value=2.1e-06 Score=83.09 Aligned_cols=144 Identities=21% Similarity=0.235 Sum_probs=84.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch------h----------HHH--HHHHHHHH---HHhCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR------R----------VAA--VSVARRVA---QELGV 75 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~------~----------~l~--~~~~~~~~---~~~~~ 75 (466)
+..|+.+.+.||+||||||++..+.+...++.|...+-..+. + .+- ..+.+.++ +..+.
T Consensus 27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~ 106 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM 106 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC
Confidence 568999999999999999999999998776655433211110 0 000 00111110 00000
Q ss_pred ccCC---eeee-eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-C
Q 012322 76 RLGE---EVGY-AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-K 150 (466)
Q Consensus 76 ~~~~---~~g~-~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~ 150 (466)
.... .+.. .....-....+....-+|.|+.++..+.+..+.+++++++||+- ..+|......+...+.+.... +
T Consensus 107 ~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~-s~LD~~~r~~l~~~L~~l~~~~~ 185 (353)
T TIGR03265 107 GRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL-SALDARVREHLRTEIRQLQRRLG 185 (353)
T ss_pred CHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcC
Confidence 0000 0000 00000000112334458999999999999999999999999998 788888777655555544332 5
Q ss_pred ceEEEEecccC
Q 012322 151 LKILITSATLD 161 (466)
Q Consensus 151 ~~ii~~SAT~~ 161 (466)
..+|+.|+.++
T Consensus 186 ~tvi~vTHd~~ 196 (353)
T TIGR03265 186 VTTIMVTHDQE 196 (353)
T ss_pred CEEEEEcCCHH
Confidence 67888777553
No 320
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.41 E-value=2.2e-06 Score=85.58 Aligned_cols=144 Identities=16% Similarity=0.113 Sum_probs=84.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch----------hHHHHHHHHHHHHHhCCccCCe---eee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR----------RVAAVSVARRVAQELGVRLGEE---VGY 83 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~----------~~l~~~~~~~~~~~~~~~~~~~---~g~ 83 (466)
+..|+.+.|.||+||||||++..+++...+..|...+...+. ...+.+.........+...... +..
T Consensus 47 I~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e 126 (549)
T PRK13545 47 VPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE 126 (549)
T ss_pred EeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence 568999999999999999999999998776655432211110 0001111000000001000000 000
Q ss_pred eE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 84 AI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 84 ~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.. ...-....+..+.-++.|+.++..++..++.+++++++||+- ..+|......+++.+......+..+|+.|+.++
T Consensus 127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPT-sgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~ 204 (549)
T PRK13545 127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAL-SVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204 (549)
T ss_pred HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 00 000000112345568999999999999899999999999998 788888777666655554433567778777653
No 321
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.41 E-value=1.1e-06 Score=80.17 Aligned_cols=145 Identities=19% Similarity=0.201 Sum_probs=84.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH----H---------------------HHHHHHH
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA----V---------------------SVARRVA 70 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~----~---------------------~~~~~~~ 70 (466)
.+.+|+.+.|.||+||||||++..+.+...+..|...+...+..... . .+.+.+.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~ 106 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIA 106 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHH
Confidence 45789999999999999999999999987665553322111110000 0 0001010
Q ss_pred ---HHhCCccCCee-e-----eeEeeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHH
Q 012322 71 ---QELGVRLGEEV-G-----YAIRFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV 140 (466)
Q Consensus 71 ---~~~~~~~~~~~-g-----~~~~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l 140 (466)
...+....... . ....+.-. ...+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~ 185 (228)
T cd03257 107 EPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT-SALDVSVQAQIL 185 (228)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCC-CCCCHHHHHHHH
Confidence 00000000000 0 00000000 0112334558999999999999899999999999998 788888777766
Q ss_pred HHHHHhhhc-CceEEEEecccC
Q 012322 141 KRLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 141 ~~i~~~~~~-~~~ii~~SAT~~ 161 (466)
+.+.+.... +..+|+.|+.++
T Consensus 186 ~~l~~~~~~~~~tii~~sH~~~ 207 (228)
T cd03257 186 DLLKKLQEELGLTLLFITHDLG 207 (228)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH
Confidence 656554432 567777777543
No 322
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=8.9e-07 Score=81.46 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=83.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHH--------------HHHHHHhCCccCCee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVA--------------RRVAQELGVRLGEEV 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~--------------~~~~~~~~~~~~~~~ 81 (466)
+..|+.+.|.||+||||||++..+++...+..|...+...+.... ..... ..+.+....... ..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~-~~ 104 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPM-LK 104 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchh-hc
Confidence 568999999999999999999999998766555433222111000 00000 011111100000 00
Q ss_pred eee-Ee-------eccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-Cc
Q 012322 82 GYA-IR-------FEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KL 151 (466)
Q Consensus 82 g~~-~~-------~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~ 151 (466)
+.. .. ..-. ...+....-++.|+.++..+....+.+++++++||+- ..+|......+.+.+...... +.
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~g~ 183 (241)
T PRK14250 105 GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT-SALDPTSTEIIEELIVKLKNKMNL 183 (241)
T ss_pred CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhCCC
Confidence 000 00 0000 0012334558999999999999899999999999998 788888766655555544332 56
Q ss_pred eEEEEecccC
Q 012322 152 KILITSATLD 161 (466)
Q Consensus 152 ~ii~~SAT~~ 161 (466)
.+|+.|+.++
T Consensus 184 tii~~sH~~~ 193 (241)
T PRK14250 184 TVIWITHNME 193 (241)
T ss_pred EEEEEeccHH
Confidence 7777777543
No 323
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.41 E-value=4.6e-07 Score=94.53 Aligned_cols=144 Identities=23% Similarity=0.233 Sum_probs=89.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-HHHHH--------------HHHHhCCccCCe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARR--------------VAQELGVRLGEE 80 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-~~~~~--------------~~~~~~~~~~~~ 80 (466)
.+.+|+.+.|+|++||||||++..+++...+..|...+...+....-. +..+. +.+.........
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~ 433 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQ 433 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCC
Confidence 456899999999999999999999999888776655444333221111 11111 111100000000
Q ss_pred eee--------eEeec---cccCc--cceE----EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 81 VGY--------AIRFE---DRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 81 ~g~--------~~~~~---~~~~~--~~~i----~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
... ....+ ..... ++.+ .-.|+|+.++..+.+..+.+.+++++||+- ..+|.+....+.+.+
T Consensus 434 ~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpt-s~LD~~~~~~i~~~L 512 (571)
T TIGR02203 434 ADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT-SALDNESERLVQAAL 512 (571)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHH
Confidence 000 00000 00000 1111 237999999999999999999999999998 789998888877767
Q ss_pred HHhhhcCceEEEEecccC
Q 012322 144 VNLRASKLKILITSATLD 161 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~~ 161 (466)
....+ +..+|+.|+..+
T Consensus 513 ~~~~~-~~tiIiitH~~~ 529 (571)
T TIGR02203 513 ERLMQ-GRTTLVIAHRLS 529 (571)
T ss_pred HHHhC-CCEEEEEehhhH
Confidence 66544 678888888753
No 324
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=5.1e-07 Score=83.90 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=49.9
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-CceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.+.-++.|+.++..+....+.+++++++||+- ..+|......+.+.+...... +..+|+.|+.++
T Consensus 150 ~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~ 215 (255)
T PRK11300 150 QAGNLAYGQQRRLEIARCMVTQPEILMLDEPA-AGLNPKETKELDELIAELRNEHNVTVLLIEHDMK 215 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-cCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 34458999999999999999999999999998 788988877765555554432 567777777543
No 325
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.41 E-value=2.9e-07 Score=85.10 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=49.2
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+..... +..+|+.|+.++
T Consensus 141 ~~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~ 204 (247)
T TIGR00972 141 SALGLSGGQQQRLCIARALAVEPEVLLLDEPT-SALDPIATGKIEELIQELKK-KYTIVIVTHNMQ 204 (247)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH
Confidence 34568999999999999999999999999998 78888887776555555443 456677666543
No 326
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=7.6e-07 Score=87.22 Aligned_cols=144 Identities=22% Similarity=0.223 Sum_probs=85.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HH-----------------------HHHHHHH--
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AV-----------------------SVARRVA-- 70 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~-----------------------~~~~~~~-- 70 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+.... .. .+.+.+.
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~ 130 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFG 130 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHH
Confidence 568999999999999999999999998876655443322221100 00 0000000
Q ss_pred -HHhCCccCC---eeee-eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 71 -QELGVRLGE---EVGY-AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 71 -~~~~~~~~~---~~g~-~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
...+..... .+.. .....-....+....-+|.|+.++..+...++.+++++++||+- ..+|......+.+.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPt-s~LD~~~r~~l~~~L~~ 209 (400)
T PRK10070 131 MELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAF-SALDPLIRTEMQDELVK 209 (400)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHH
Confidence 000000000 0000 00000000112334558999999999999999999999999998 78998887776666655
Q ss_pred hhh-cCceEEEEecccC
Q 012322 146 LRA-SKLKILITSATLD 161 (466)
Q Consensus 146 ~~~-~~~~ii~~SAT~~ 161 (466)
... .+..+|+.|+.++
T Consensus 210 l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 210 LQAKHQRTIVFISHDLD 226 (400)
T ss_pred HHHHCCCeEEEEECCHH
Confidence 433 2567888888654
No 327
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=3.4e-06 Score=79.60 Aligned_cols=150 Identities=21% Similarity=0.245 Sum_probs=87.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH----------------------H-HHHHHHHHH---
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------------A-AVSVARRVA--- 70 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~----------------------l-~~~~~~~~~--- 70 (466)
+..|+.+.|+||+||||||++..+.+...+..|...+...+... . ...+.+.+.
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 109 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGP 109 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHH
Confidence 57899999999999999999999999876655543322211100 0 000111110
Q ss_pred HHhCCccCC---eeee---eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 71 QELGVRLGE---EVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 71 ~~~~~~~~~---~~g~---~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
...+..... .+.. ..........+..+.-+|.|+.++..++...+.+++++|+||+- ..+|......+++.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt-~gLD~~~~~~l~~~l~ 188 (287)
T PRK13637 110 INLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPT-AGLDPKGRDEILNKIK 188 (287)
T ss_pred HHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-cCCCHHHHHHHHHHHH
Confidence 000000000 0000 00000000123445668999999999999999999999999998 7888888777555555
Q ss_pred Hhhhc-CceEEEEecccChhHHHhhc
Q 012322 145 NLRAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 145 ~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
..... +..+|+.|+-++ .+..+.
T Consensus 189 ~l~~~~g~tvi~vtHd~~--~~~~~~ 212 (287)
T PRK13637 189 ELHKEYNMTIILVSHSME--DVAKLA 212 (287)
T ss_pred HHHHhcCCEEEEEeCCHH--HHHHhC
Confidence 44332 566777777543 344444
No 328
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.40 E-value=5.8e-07 Score=83.54 Aligned_cols=145 Identities=20% Similarity=0.225 Sum_probs=83.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHHHHHHHH---HHHhCC----ccCCeeeee---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRV---AQELGV----RLGEEVGYA--- 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~~~~~~~---~~~~~~----~~~~~~g~~--- 84 (466)
.+.+|+.+.|+||+||||||++..+++...+..|...+...+... ......+.+ .+.... .+.....+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 103 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP 103 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcc
Confidence 356899999999999999999999999876665543332221100 000000000 000000 000000000
Q ss_pred --E--e------------eccccCccceEEEcCHHHHHHHHhhCCCC------CCCcEEEecCCCccccCHHHHHHHHHH
Q 012322 85 --I--R------------FEDRTSERTLIKYLTDGVLLREILSNPDL------SPYSVIILDEAHERSLNTDILLGLVKR 142 (466)
Q Consensus 85 --~--~------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l------~~~~~iIiDEah~~~~~~~~~~~~l~~ 142 (466)
. . ..-....+..+.-+|.|+.++..+....+ .+++++++||+- ..+|......+.+.
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt-~~LD~~~~~~l~~~ 182 (258)
T PRK13548 104 HGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT-SALDLAHQHHVLRL 182 (258)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCc-ccCCHHHHHHHHHH
Confidence 0 0 00000113445568999999998888777 589999999998 78888877665555
Q ss_pred HHHhh-hcCceEEEEecccC
Q 012322 143 LVNLR-ASKLKILITSATLD 161 (466)
Q Consensus 143 i~~~~-~~~~~ii~~SAT~~ 161 (466)
+.... ..+..+|+.|+.++
T Consensus 183 l~~~~~~~~~tiii~sH~~~ 202 (258)
T PRK13548 183 ARQLAHERGLAVIVVLHDLN 202 (258)
T ss_pred HHHHHHhcCCEEEEEECCHH
Confidence 55443 23567777777543
No 329
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2.5e-06 Score=83.30 Aligned_cols=145 Identities=20% Similarity=0.207 Sum_probs=84.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh----------------HHH--HHHHHHHH---HHhC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR----------------VAA--VSVARRVA---QELG 74 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~----------------~l~--~~~~~~~~---~~~~ 74 (466)
.+.+|+.+.|.||+||||||++..+.+...+..|...+...+.. .+. ..+.+.+. ...+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~ 104 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG 104 (369)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC
Confidence 35689999999999999999999999987665553222111100 000 00111110 0000
Q ss_pred CccCC---eeee-eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-
Q 012322 75 VRLGE---EVGY-AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS- 149 (466)
Q Consensus 75 ~~~~~---~~g~-~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~- 149 (466)
..... .+.. .....-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+...+.+....
T Consensus 105 ~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt-s~LD~~~~~~l~~~L~~l~~~~ 183 (369)
T PRK11000 105 AKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL-SNLDAALRVQMRIEISRLHKRL 183 (369)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHHh
Confidence 00000 0000 00000000112334558999999999999999999999999998 788888776655555544332
Q ss_pred CceEEEEecccC
Q 012322 150 KLKILITSATLD 161 (466)
Q Consensus 150 ~~~ii~~SAT~~ 161 (466)
+..+|+.|+.++
T Consensus 184 g~tvI~vTHd~~ 195 (369)
T PRK11000 184 GRTMIYVTHDQV 195 (369)
T ss_pred CCEEEEEeCCHH
Confidence 567888777553
No 330
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=5.3e-07 Score=81.18 Aligned_cols=141 Identities=18% Similarity=0.236 Sum_probs=81.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH---HHHhC----CccCCeeeee-----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELG----VRLGEEVGYA----- 84 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~---~~~~~----~~~~~~~g~~----- 84 (466)
+.+| .+.|.||+||||||++..+.+...+..|...+...+.........+.+ .+... ..+...+.+.
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 101 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG 101 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC
Confidence 4567 899999999999999999998876655543332222110000000000 00000 0000000000
Q ss_pred E--------------eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 85 I--------------RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 85 ~--------------~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
. ...-....+..+.-+|.|+.++..+......+++++++||+- ..+|......+.+.+..... +
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~ 179 (211)
T cd03264 102 IPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT-AGLDPEERIRFRNLLSELGE-D 179 (211)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHhC-C
Confidence 0 000000012344558999999999999999999999999998 78888877765555554443 5
Q ss_pred ceEEEEeccc
Q 012322 151 LKILITSATL 160 (466)
Q Consensus 151 ~~ii~~SAT~ 160 (466)
..+|+.|+.+
T Consensus 180 ~tii~vsH~~ 189 (211)
T cd03264 180 RIVILSTHIV 189 (211)
T ss_pred CEEEEEcCCH
Confidence 5666666644
No 331
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.40 E-value=1.1e-06 Score=91.89 Aligned_cols=138 Identities=20% Similarity=0.204 Sum_probs=87.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-HHHHH--------------------------
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARR-------------------------- 68 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-~~~~~-------------------------- 68 (466)
.+..|+.+.|+|++||||||++..+++...+.+|...+-..+....-. ...+.
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~ 442 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDIS 442 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCC
Confidence 356899999999999999999999999888876654433333211100 00010
Q ss_pred ------HHHHhCCcc--C-CeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHH
Q 012322 69 ------VAQELGVRL--G-EEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL 139 (466)
Q Consensus 69 ------~~~~~~~~~--~-~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~ 139 (466)
..+..+..- . ..-|+.... .. .=.-.|+|+.+|..+++..+.+.+++++||+- ..+|.+....+
T Consensus 443 d~~i~~a~~~~gl~~~i~~lp~Gldt~i----~e--~g~~LSGGqrQRialARaLl~~~~illlDEpt-s~LD~~t~~~i 515 (592)
T PRK10790 443 EEQVWQALETVQLAELARSLPDGLYTPL----GE--QGNNLSVGQKQLLALARVLVQTPQILILDEAT-ANIDSGTEQAI 515 (592)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccc----cC--CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHH
Confidence 011111000 0 000100000 00 01127899999999999999999999999998 78898887776
Q ss_pred HHHHHHhhhcCceEEEEecccC
Q 012322 140 VKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 140 l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.+.+.+..+ +..+|++|+-++
T Consensus 516 ~~~l~~~~~-~~tvIivtHr~~ 536 (592)
T PRK10790 516 QQALAAVRE-HTTLVVIAHRLS 536 (592)
T ss_pred HHHHHHHhC-CCEEEEEecchH
Confidence 666665544 678888888763
No 332
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.40 E-value=4.6e-07 Score=94.61 Aligned_cols=143 Identities=19% Similarity=0.157 Sum_probs=87.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHHHHH--------------HHHHhCCccCC--
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARR--------------VAQELGVRLGE-- 79 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~~~~--------------~~~~~~~~~~~-- 79 (466)
+++|+.++|+|++||||||++..+++...+..|...+...+....- .+..+. +.+........
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~ 442 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDAT 442 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCC
Confidence 5689999999999999999999999988876665444333322111 111111 01111000000
Q ss_pred ---------eeeeeEeecccc-Ccc----ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 80 ---------EVGYAIRFEDRT-SER----TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 80 ---------~~g~~~~~~~~~-~~~----~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
.+|.....+.-. .-+ ..-.-.+.|+.++..+++..+++.+++|+||+- ..+|.+....+.+.+..
T Consensus 443 ~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpt-s~lD~~~~~~i~~~l~~ 521 (576)
T TIGR02204 443 DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT-SALDAESEQLVQQALET 521 (576)
T ss_pred HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcc-cccCHHHHHHHHHHHHH
Confidence 000000000000 001 111237899999999999999999999999998 78888877766666665
Q ss_pred hhhcCceEEEEecccC
Q 012322 146 LRASKLKILITSATLD 161 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~ 161 (466)
..+ +..+|+.|+-++
T Consensus 522 ~~~-~~t~IiitH~~~ 536 (576)
T TIGR02204 522 LMK-GRTTLIIAHRLA 536 (576)
T ss_pred HhC-CCEEEEEecchH
Confidence 544 678888888763
No 333
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.40 E-value=1.5e-06 Score=72.73 Aligned_cols=143 Identities=19% Similarity=0.251 Sum_probs=91.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEE-----eCchh-----HHHHHHHHHHH-------HHhCCccC-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-----TQPRR-----VAAVSVARRVA-------QELGVRLG- 78 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~-----~~p~~-----~l~~~~~~~~~-------~~~~~~~~- 78 (466)
...|+++-|+|.+||||||++.++-....+..|...+. +.|.+ ..-..+.+++. +.++....
T Consensus 29 A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm 108 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHM 108 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHH
Confidence 35789999999999999999999988777665543321 22211 11122223332 22221100
Q ss_pred ---C--------eeeeeEeecc---------c----cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHH
Q 012322 79 ---E--------EVGYAIRFED---------R----TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTD 134 (466)
Q Consensus 79 ---~--------~~g~~~~~~~---------~----~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~ 134 (466)
. ..|.. +.+. + ...+.--..++.|+-++..+++....++.++.+||.. ..+|++
T Consensus 109 tvLeNViEaPvhVLg~~-k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPT-SALDPE 186 (256)
T COG4598 109 TVLENVIEAPVHVLGVS-KAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPT-SALDPE 186 (256)
T ss_pred HHHHHHHhcchHhhcCC-HHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCc-ccCCHH
Confidence 0 00100 0000 0 0011222357899999999999999999999999998 789999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 135 ILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 135 ~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
...+.++-+......+...+++|+-+.
T Consensus 187 lVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 187 LVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 999988888777777888899998774
No 334
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.39 E-value=2.5e-07 Score=85.71 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=49.8
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-CceEEEEecccC
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SAT~~ 161 (466)
..-+|.|+.++..+....+.+++++++||+. ..+|......+.+.+.+.... +..+|+.|+.++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 208 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVT-SALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG 208 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 3458899999999998899999999999998 788888777666555554432 567888888654
No 335
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=4e-07 Score=85.56 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=86.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHHHHHHHH---HHH-----hCCccCCeeee----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRV---AQE-----LGVRLGEEVGY---- 83 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~~~~~~~---~~~-----~~~~~~~~~g~---- 83 (466)
+..|+.+.|.|++||||||++..+.+...+..|...+-..+... ...+....+ .+. +..++...+.+
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~ 106 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPIN 106 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHH
Confidence 56899999999999999999999999877665543332211000 000000000 000 00000000000
Q ss_pred -eEee--------------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 84 -AIRF--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 84 -~~~~--------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
.... .-.......+.-.|.|+.++..+....+.+++++|+||+- ..+|......+++.+.....
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt-~gLD~~~~~~l~~~l~~l~~ 185 (277)
T PRK13652 107 LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT-AGLDPQGVKELIDFLNDLPE 185 (277)
T ss_pred cCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 0000 0000113345568999999999999999999999999998 78888877665555554433
Q ss_pred c-CceEEEEecccChhHHHhhc
Q 012322 149 S-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 149 ~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
. +..+|+.|+-++ .+.++.
T Consensus 186 ~~g~tvli~tH~~~--~~~~~~ 205 (277)
T PRK13652 186 TYGMTVIFSTHQLD--LVPEMA 205 (277)
T ss_pred hcCCEEEEEecCHH--HHHHhC
Confidence 2 566777666543 344444
No 336
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.39 E-value=7.3e-06 Score=78.43 Aligned_cols=123 Identities=17% Similarity=0.265 Sum_probs=72.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe-CchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceEEE
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~-~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ 99 (466)
..++++||||+||||++..+.......+....++. -+.|..+.++.+..++..+..+ +..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------------------~v~ 302 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------IAV 302 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------------------Eec
Confidence 57899999999999888877765543222333333 3556555555555545443221 112
Q ss_pred cCHHHHHHHHhhCCCCCCCcEEEecCCCccccC-HHHHHHHHHHHHHhhhcCceEEEEecccChhH
Q 012322 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKILITSATLDGEK 164 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~-~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~ 164 (466)
.++..+.+.+.......++++|+||-+- +... ...+.. +..++....+...++.+|||...+.
T Consensus 303 ~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~E-L~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 303 RDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEE-MIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHH-HHHHHhhcCCCeEEEEECCccChHH
Confidence 3566665554322222368999999998 4443 333444 5555544333556777999886544
No 337
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.39 E-value=4.2e-07 Score=94.43 Aligned_cols=144 Identities=21% Similarity=0.220 Sum_probs=87.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-HHHHH--------------HHHHhCCccCCe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARR--------------VAQELGVRLGEE 80 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-~~~~~--------------~~~~~~~~~~~~ 80 (466)
.+.+|+.+.|+||+||||||++..+++...+..|...+...+...... +..+. +.+.........
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~ 416 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDA 416 (569)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCC
Confidence 356899999999999999999999999888776665444333322111 11111 011100000000
Q ss_pred ----eee---eEeec---cccCc--c----ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 81 ----VGY---AIRFE---DRTSE--R----TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 81 ----~g~---~~~~~---~~~~~--~----~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
... ....+ ..... + ..-.-.+.|+.++..+++..+.+.+++++||+- ..+|......+.+.+.
T Consensus 417 ~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt-s~LD~~~~~~i~~~l~ 495 (569)
T PRK10789 417 TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL-SAVDGRTEHQILHNLR 495 (569)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc-ccCCHHHHHHHHHHHH
Confidence 000 00000 00000 0 111237999999999999999999999999998 7889888777666665
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
...+ +..+|+.|+-++
T Consensus 496 ~~~~-~~tii~itH~~~ 511 (569)
T PRK10789 496 QWGE-GRTVIISAHRLS 511 (569)
T ss_pred HHhC-CCEEEEEecchh
Confidence 5543 667777777653
No 338
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.39 E-value=3.4e-06 Score=77.96 Aligned_cols=144 Identities=18% Similarity=0.143 Sum_probs=82.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEE-----------EEeCchhHHHHHHHHH-H-----HHHhCCccC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-----------GVTQPRRVAAVSVARR-V-----AQELGVRLG 78 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i-----------~~~~p~~~l~~~~~~~-~-----~~~~~~~~~ 78 (466)
.+.+|+.+.|+||+||||||++..+++...++.|... +...+......+..+. + .+.......
T Consensus 22 ~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK 101 (255)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch
Confidence 3678999999999999999999999998877666532 1121111100000000 0 000000000
Q ss_pred ---CeeeeeEe-e-------------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 79 ---EEVGYAIR-F-------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 79 ---~~~g~~~~-~-------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
..+..... . .-....+..+.-++.|+.++..+....+.+.+++++||+- ..+|......+.+
T Consensus 102 ~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt-s~LD~~~~~~l~~ 180 (255)
T cd03236 102 AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPS-SYLDIKQRLNAAR 180 (255)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC-CCCCHHHHHHHHH
Confidence 00000000 0 0000012334457899999988888888899999999998 7888887665544
Q ss_pred HHHHhhhcCceEEEEeccc
Q 012322 142 RLVNLRASKLKILITSATL 160 (466)
Q Consensus 142 ~i~~~~~~~~~ii~~SAT~ 160 (466)
.+......+..+|+.|+.+
T Consensus 181 ~l~~l~~~~~tIIiiSHd~ 199 (255)
T cd03236 181 LIRELAEDDNYVLVVEHDL 199 (255)
T ss_pred HHHHHHhcCCEEEEEECCH
Confidence 4444333356677777754
No 339
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=5.9e-07 Score=84.54 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=86.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH--HHHHHHHHH---H-----HhCCccCCeeeee--
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA--AVSVARRVA---Q-----ELGVRLGEEVGYA-- 84 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l--~~~~~~~~~---~-----~~~~~~~~~~g~~-- 84 (466)
+..|+.+.|+||+||||||++..+.+...+..|...+...+.... .....+.+. + .+...+...+.+.
T Consensus 33 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~ 112 (280)
T PRK13633 33 VKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPE 112 (280)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHh
Confidence 568999999999999999999999998776655443322221100 000000000 0 0000000000000
Q ss_pred ---Ee--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 85 ---IR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 85 ---~~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
.. ..-....+..+.-.|.|+.++..+...++.+++++++||+- ..+|......+.+.+.+..
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~l~ 191 (280)
T PRK13633 113 NLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT-AMLDPSGRREVVNTIKELN 191 (280)
T ss_pred hcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHH
Confidence 00 00000112445568999999999999999999999999998 7899888777665555443
Q ss_pred h-cCceEEEEecccC
Q 012322 148 A-SKLKILITSATLD 161 (466)
Q Consensus 148 ~-~~~~ii~~SAT~~ 161 (466)
. .+..+|+.|+.++
T Consensus 192 ~~~g~tillvtH~~~ 206 (280)
T PRK13633 192 KKYGITIILITHYME 206 (280)
T ss_pred HhcCCEEEEEecChH
Confidence 3 2567888777665
No 340
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.39 E-value=5.3e-07 Score=87.67 Aligned_cols=144 Identities=22% Similarity=0.289 Sum_probs=86.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc-----hhHHHHHHH---H-HH---HHHhCC----ccCCe
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-----RRVAAVSVA---R-RV---AQELGV----RLGEE 80 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p-----~~~l~~~~~---~-~~---~~~~~~----~~~~~ 80 (466)
+.+|+.+.|.|++||||||++..+.+...++.|...+-..+ ......+.. . .+ .+.... ++...
T Consensus 47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eN 126 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEEN 126 (382)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHH
Confidence 46789999999999999999999999887766654332211 000000000 0 00 000000 00000
Q ss_pred eeeeE-----ee--------------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 81 VGYAI-----RF--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 81 ~g~~~-----~~--------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
+.+.. .. .-....+....-++.|+.++..+...+..+++++++||+. ..+|......+.+
T Consensus 127 i~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt-s~LD~~~r~~l~~ 205 (382)
T TIGR03415 127 VAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF-SALDPLIRTQLQD 205 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHH
Confidence 00000 00 0000012233448999999999999999999999999998 7899988777766
Q ss_pred HHHHhhhc-CceEEEEecccC
Q 012322 142 RLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 142 ~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.+.+.... +..+|+.|+.++
T Consensus 206 ~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 206 ELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred HHHHHHHhcCCEEEEEeCCHH
Confidence 66665442 567888888654
No 341
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.39 E-value=2.4e-07 Score=84.94 Aligned_cols=143 Identities=20% Similarity=0.149 Sum_probs=83.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc----------------hhHHH--HHHHHHHH---HHhCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP----------------RRVAA--VSVARRVA---QELGV 75 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p----------------~~~l~--~~~~~~~~---~~~~~ 75 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+ ..... ....+.+. ...+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~ 102 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKH 102 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCC
Confidence 67899999999999999999999998776554432221111 00000 00111110 00000
Q ss_pred ccCC---eeeee-EeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-C
Q 012322 76 RLGE---EVGYA-IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-K 150 (466)
Q Consensus 76 ~~~~---~~g~~-~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~ 150 (466)
.... .+... ....-....+....-.+.|+.++..+....+.+++++++||+- ..+|......+++.+...... +
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~~~~~ 181 (237)
T TIGR00968 103 PKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPF-GALDAKVRKELRSWLRKLHDEVH 181 (237)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcC
Confidence 0000 00000 0000000112334558999999999999899999999999998 789988877766666554432 4
Q ss_pred ceEEEEeccc
Q 012322 151 LKILITSATL 160 (466)
Q Consensus 151 ~~ii~~SAT~ 160 (466)
..+++.|+-+
T Consensus 182 ~tvli~sH~~ 191 (237)
T TIGR00968 182 VTTVFVTHDQ 191 (237)
T ss_pred CEEEEEeCCH
Confidence 6777777754
No 342
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.39 E-value=1.5e-06 Score=78.80 Aligned_cols=144 Identities=19% Similarity=0.214 Sum_probs=85.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH----HHHHHH---HH---HhC-CccCCeeee--
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV----SVARRV---AQ---ELG-VRLGEEVGY-- 83 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~----~~~~~~---~~---~~~-~~~~~~~g~-- 83 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+...... ...+.+ .+ .+. ..+.....+
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~ 107 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL 107 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHH
Confidence 57899999999999999999999999876665543332222110000 000000 00 000 000000000
Q ss_pred ----eE-------eec-------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 84 ----AI-------RFE-------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 84 ----~~-------~~~-------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
.. ... -....+..+.-.++|+.++..+....+.+++++++||+. ..+|......++..+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~ 186 (220)
T TIGR02982 108 ELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPT-AALDSKSGRDVVELMQK 186 (220)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHH
Confidence 00 000 000012233458899999999998999999999999998 78888887765555555
Q ss_pred hhh-cCceEEEEecccC
Q 012322 146 LRA-SKLKILITSATLD 161 (466)
Q Consensus 146 ~~~-~~~~ii~~SAT~~ 161 (466)
... .+..+|+.|+-++
T Consensus 187 ~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 187 LAREQGCTILIVTHDNR 203 (220)
T ss_pred HHHHcCCEEEEEeCCHH
Confidence 443 2577888888754
No 343
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.39 E-value=5e-07 Score=83.97 Aligned_cols=150 Identities=18% Similarity=0.163 Sum_probs=86.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHHHHHHH---HHHHhC----CccCCeeee-----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARR---VAQELG----VRLGEEVGY----- 83 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~~~~~~---~~~~~~----~~~~~~~g~----- 83 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+... ......+. +.+... .++.....+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 103 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPH 103 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhh
Confidence 56899999999999999999999999877665543332211100 00000000 000000 000000000
Q ss_pred ----e----E---e-------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 84 ----A----I---R-------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 84 ----~----~---~-------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
. . . ..-....+..+.-++.|+.++..+....+.+++++++||+- ..+|......+.+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~ 182 (256)
T TIGR03873 104 RSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPT-NHLDVRAQLETLALVRE 182 (256)
T ss_pred hhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCcc-ccCCHHHHHHHHHHHHH
Confidence 0 0 0 00000112345568999999999988889999999999998 78888877665555554
Q ss_pred hhhcCceEEEEecccChhHHHhhc
Q 012322 146 LRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
....+..+|+.|+.++ .+.++.
T Consensus 183 ~~~~~~tiii~sH~~~--~~~~~~ 204 (256)
T TIGR03873 183 LAATGVTVVAALHDLN--LAASYC 204 (256)
T ss_pred HHhcCCEEEEEeCCHH--HHHHhC
Confidence 4333567788777654 344444
No 344
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.38 E-value=2.7e-06 Score=82.56 Aligned_cols=144 Identities=22% Similarity=0.263 Sum_probs=84.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCC--CcEEEEeCc------hh----------HHH--HHHHHHHH---HHh
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTK--SGIIGVTQP------RR----------VAA--VSVARRVA---QEL 73 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~--~~~i~~~~p------~~----------~l~--~~~~~~~~---~~~ 73 (466)
+..|+.+.+.||+||||||++..+.+...++. |...+...+ .+ .+. ..+.+.++ +..
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~ 107 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ 107 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc
Confidence 56899999999999999999999999877665 543221111 00 000 00111111 000
Q ss_pred CCccC---CeeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc
Q 012322 74 GVRLG---EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (466)
Q Consensus 74 ~~~~~---~~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~ 149 (466)
+.... ..+.... ...-....+....-+|.|+.++..+.+.++.+++++++||+- ..+|......+...+.+....
T Consensus 108 ~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~-s~LD~~~r~~l~~~l~~l~~~ 186 (362)
T TIGR03258 108 KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL-SALDANIRANMREEIAALHEE 186 (362)
T ss_pred CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHh
Confidence 00000 0000000 000000112344568999999999999999999999999998 788888877765555554442
Q ss_pred --CceEEEEecccC
Q 012322 150 --KLKILITSATLD 161 (466)
Q Consensus 150 --~~~ii~~SAT~~ 161 (466)
+..+|+.|+.++
T Consensus 187 ~~g~til~vTHd~~ 200 (362)
T TIGR03258 187 LPELTILCVTHDQD 200 (362)
T ss_pred CCCCEEEEEeCCHH
Confidence 467788777653
No 345
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.38 E-value=2.5e-07 Score=89.92 Aligned_cols=144 Identities=20% Similarity=0.167 Sum_probs=84.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH----------------------HH--HHHHHHHHHH
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------------AA--VSVARRVAQE 72 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~----------------------l~--~~~~~~~~~~ 72 (466)
+..|+.+.|.||+||||||++..+++...+..|...+...+... +. ..+.+.+.-.
T Consensus 20 i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 99 (354)
T TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYG 99 (354)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHH
Confidence 56899999999999999999999999876655543221111000 00 0011111000
Q ss_pred hCCccCCe----eeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 73 LGVRLGEE----VGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 73 ~~~~~~~~----~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
........ +.... ...-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+....
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~L~~l~ 178 (354)
T TIGR02142 100 MKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL-AALDDPRKYEILPYLERLH 178 (354)
T ss_pred hhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC-cCCCHHHHHHHHHHHHHHH
Confidence 00000000 00000 000000112334458999999999999999999999999998 7899888777666665544
Q ss_pred hc-CceEEEEecccC
Q 012322 148 AS-KLKILITSATLD 161 (466)
Q Consensus 148 ~~-~~~ii~~SAT~~ 161 (466)
.. +..+|+.|+.++
T Consensus 179 ~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 179 AEFGIPILYVSHSLQ 193 (354)
T ss_pred HhcCCEEEEEecCHH
Confidence 32 566788777553
No 346
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.38 E-value=4.3e-06 Score=88.16 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=99.9
Q ss_pred eEEEEecccChh--HHHhhcCCCCeEeeCCCcCcee-----eeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHH
Q 012322 152 KILITSATLDGE--KVSKFFSNCPTLNVPGKLYPVE-----ILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (466)
Q Consensus 152 ~ii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~ 224 (466)
++-+||.|...+ .|.+.+ +..++.++...--.. ..|. .......+.+..+...+. .+.|+||-+.|.+
T Consensus 565 kLsGMTGTA~tea~Ef~~IY-~L~Vv~IPTnrP~~R~D~~D~vy~--t~~eK~~Aii~ei~~~~~--~GrPVLVGT~SVe 639 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIY-KLDVVVIPTNRPIARKDKEDLVYK--TKREKYNAVIEEITELSE--AGRPVLVGTTSVE 639 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHh-CCCEEECCCCCCcceecCCCeEec--CHHHHHHHHHHHHHHHHH--CCCCEEEEeCcHH
Confidence 567788887432 344444 355666665321111 1111 111223444555555553 4569999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccC--------CeEEEE
Q 012322 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD--------GVVYVI 296 (466)
Q Consensus 225 ~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip--------~v~~VI 296 (466)
..+.+++.|... ++..-.+++.....+-..|-++=+.| .|-||||+|+||-||. +=-+||
T Consensus 640 ~SE~lS~~L~~~----------gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VI 707 (1112)
T PRK12901 640 ISELLSRMLKMR----------KIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAII 707 (1112)
T ss_pred HHHHHHHHHHHc----------CCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEE
Confidence 999999999886 44444566665455544444443333 6899999999999986 223444
Q ss_pred eCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 297 DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 297 ~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
-+.. +.|.--=.|-.||+||. .||.+-.+.+-++
T Consensus 708 gTer------------------heSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 708 GTER------------------HESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred EccC------------------CCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 3333 33555556999999999 6888666555443
No 347
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.38 E-value=4.7e-07 Score=82.10 Aligned_cols=144 Identities=19% Similarity=0.168 Sum_probs=84.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHH--------------HHHHHhCCccCCe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVAR--------------RVAQELGVRLGEE 80 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~--------------~~~~~~~~~~~~~ 80 (466)
.+.+|+.+.|.||+||||||++..+.+...+..|...+...+.... .....+ .+.+.........
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~ 105 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA 105 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCC
Confidence 3578999999999999999999999998766555433322221100 000000 0111110000000
Q ss_pred e--e--e---eEeeccccC---------ccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 81 V--G--Y---AIRFEDRTS---------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 81 ~--g--~---~~~~~~~~~---------~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
. . . ......... ......-+|.|+.++..+....+.+++++|+||+- ..+|......+.+.+.
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~ 184 (220)
T cd03245 106 DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPT-SAMDMNSEERLKERLR 184 (220)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHH
Confidence 0 0 0 000000000 00123468999999999999889999999999998 7889888777666665
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
.... +..+|+.|+.++
T Consensus 185 ~~~~-~~tii~~sH~~~ 200 (220)
T cd03245 185 QLLG-DKTLIIITHRPS 200 (220)
T ss_pred HhcC-CCEEEEEeCCHH
Confidence 5544 466777777654
No 348
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=6.4e-07 Score=83.89 Aligned_cols=145 Identities=19% Similarity=0.144 Sum_probs=84.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-----HH----------------HHHHHHHHHH---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-----VA----------------AVSVARRVAQ--- 71 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-----~l----------------~~~~~~~~~~--- 71 (466)
.+..|+.+.|.||+||||||++..+++...+..|...+...+.. .. ...+.+.+.-
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 110 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLE 110 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHH
Confidence 35689999999999999999999999987665554322211110 00 0011111100
Q ss_pred HhCCccCCe---eee-eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 72 ELGVRLGEE---VGY-AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 72 ~~~~~~~~~---~g~-~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
..+...... +.. .....-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+.+..
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~-~gLD~~~~~~l~~~l~~~~ 189 (271)
T PRK13632 111 NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDEST-SMLDPKGKREIKKIMVDLR 189 (271)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHH
Confidence 000000000 000 00000000112344568999999999999999999999999998 7888887777666555544
Q ss_pred hc-CceEEEEecccC
Q 012322 148 AS-KLKILITSATLD 161 (466)
Q Consensus 148 ~~-~~~ii~~SAT~~ 161 (466)
.. +..+|+.|+.++
T Consensus 190 ~~~~~tiii~sH~~~ 204 (271)
T PRK13632 190 KTRKKTLISITHDMD 204 (271)
T ss_pred HhcCcEEEEEEechh
Confidence 32 366777777654
No 349
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.38 E-value=2.9e-06 Score=82.70 Aligned_cols=143 Identities=18% Similarity=0.197 Sum_probs=83.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh----------------HH--HHHHHHHHHHHh---CC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR----------------VA--AVSVARRVAQEL---GV 75 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~----------------~l--~~~~~~~~~~~~---~~ 75 (466)
+..|+.+.+.||+||||||++..+++...+..|...+...+.. .+ -..+.+.++-.+ +.
T Consensus 37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~ 116 (375)
T PRK09452 37 INNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT 116 (375)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC
Confidence 5689999999999999999999999988765554322111100 00 000111111000 00
Q ss_pred ccC---CeeeeeEe-eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-C
Q 012322 76 RLG---EEVGYAIR-FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-K 150 (466)
Q Consensus 76 ~~~---~~~g~~~~-~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~ 150 (466)
... ..+..... ..-....+....-++.|+.++..+.+..+.+++++++||+- ..+|......+...+.+.... +
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~-s~LD~~~r~~l~~~L~~l~~~~g 195 (375)
T PRK09452 117 PAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL-SALDYKLRKQMQNELKALQRKLG 195 (375)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHhcC
Confidence 000 00000000 00000012233458999999999999999999999999998 788888776655555544432 5
Q ss_pred ceEEEEeccc
Q 012322 151 LKILITSATL 160 (466)
Q Consensus 151 ~~ii~~SAT~ 160 (466)
..+|+.|+-.
T Consensus 196 ~tiI~vTHd~ 205 (375)
T PRK09452 196 ITFVFVTHDQ 205 (375)
T ss_pred CEEEEEeCCH
Confidence 7788877754
No 350
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.38 E-value=1.1e-06 Score=80.19 Aligned_cols=151 Identities=23% Similarity=0.239 Sum_probs=86.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCc----CCCcEEEEeCchhHH-----------------H---HHHHHHHH-
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGY----TKSGIIGVTQPRRVA-----------------A---VSVARRVA- 70 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~----~~~~~i~~~~p~~~l-----------------~---~~~~~~~~- 70 (466)
.+..|+.+.|.||+||||||++..+++...+ ..|...+...+.... . ....+.+.
T Consensus 8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~ 87 (230)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIE 87 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHH
Confidence 3568999999999999999999999998765 444332222221100 0 00000000
Q ss_pred --HHhCCccCCe---eee---eEeecc-ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 71 --QELGVRLGEE---VGY---AIRFED-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 71 --~~~~~~~~~~---~g~---~~~~~~-~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
...+...... +.. ...... ....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt-~~LD~~~~~~l~~ 166 (230)
T TIGR02770 88 TLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPT-TDLDVVNQARVLK 166 (230)
T ss_pred HHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc-cccCHHHHHHHHH
Confidence 0000000000 000 000000 00112345568999999999998889999999999998 7889888777656
Q ss_pred HHHHhhhc-CceEEEEecccChhHHHhhc
Q 012322 142 RLVNLRAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 142 ~i~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
.+.+.... +..+|+.|+-+ +.+..+.
T Consensus 167 ~l~~~~~~~~~tiii~sH~~--~~~~~~~ 193 (230)
T TIGR02770 167 LLRELRQLFGTGILLITHDL--GVVARIA 193 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCH--HHHHHhC
Confidence 55554432 45677766644 3344444
No 351
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=5.6e-07 Score=84.05 Aligned_cols=144 Identities=21% Similarity=0.263 Sum_probs=84.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHHHHHHHH---HHHhCC----ccCCeeeee---E
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRV---AQELGV----RLGEEVGYA---I 85 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~~~~~~~---~~~~~~----~~~~~~g~~---~ 85 (466)
+..|+.+.|.||+||||||++..+++...+..|...+...+... ...+..+.+ .+.... .+.....+. .
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPW 113 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccc
Confidence 56899999999999999999999999876655543332222110 000000000 000000 000000000 0
Q ss_pred ---------eeccc-----------cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 86 ---------RFEDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 86 ---------~~~~~-----------~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
..... ...+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 114 HGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPT-SALDIAHQVDVLALVHR 192 (265)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHH
Confidence 00000 0012233458999999999988899999999999998 78888887765555555
Q ss_pred hhhc-CceEEEEecccC
Q 012322 146 LRAS-KLKILITSATLD 161 (466)
Q Consensus 146 ~~~~-~~~ii~~SAT~~ 161 (466)
.... +..+|+.|+.++
T Consensus 193 l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 193 LSQERGLTVIAVLHDIN 209 (265)
T ss_pred HHHhcCCEEEEEeCCHH
Confidence 4332 567788777654
No 352
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.38 E-value=4.4e-07 Score=96.64 Aligned_cols=142 Identities=24% Similarity=0.249 Sum_probs=86.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-HHHHHHH---HH---hCCccCCeeeeeE---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QE---LGVRLGEEVGYAI--- 85 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-~~~~~~~---~~---~~~~~~~~~g~~~--- 85 (466)
.+.+|+.+.|+||+||||||++..+.+...+.+|...+...|.+..-. +..+.++ +. ++.++.++..+..
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~ 582 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDT 582 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCC
Confidence 356899999999999999999999999988877766555555433211 1111110 00 0000000000000
Q ss_pred e------------ec---cccCc--cce----EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 86 R------------FE---DRTSE--RTL----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 86 ~------------~~---~~~~~--~~~----i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
. .+ ..... ++. -.-.|.|+.+|..+++..+++.+++|+||+- ..+|.+....+.+ .
T Consensus 583 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpT-SaLD~~te~~i~~--~ 659 (711)
T TIGR00958 583 PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT-SALDAECEQLLQE--S 659 (711)
T ss_pred CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccc-cccCHHHHHHHHH--h
Confidence 0 00 00000 111 1237999999999999999999999999998 7888877555444 2
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
... ++..+|+.|+-++
T Consensus 660 ~~~-~~~TvIiItHrl~ 675 (711)
T TIGR00958 660 RSR-ASRTVLLIAHRLS 675 (711)
T ss_pred hcc-CCCeEEEEeccHH
Confidence 222 3677888888764
No 353
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=8.6e-07 Score=83.50 Aligned_cols=145 Identities=20% Similarity=0.209 Sum_probs=85.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCC---CcEEEEeCchhH-HHHHHHHHHH--------HHhCCccCCeeee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK---SGIIGVTQPRRV-AAVSVARRVA--------QELGVRLGEEVGY 83 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~---~~~i~~~~p~~~-l~~~~~~~~~--------~~~~~~~~~~~g~ 83 (466)
.+..|+.+.|+||+||||||++..+++...+.. |...+-..+... ........+. ......+...+.+
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~ 108 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF 108 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHh
Confidence 356899999999999999999999999876654 322221111100 0000000000 0000000000000
Q ss_pred e-----Ee--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 84 A-----IR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 84 ~-----~~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
. .. +.-....+....-.|.|+.++..+....+.+++++|+||+- ..+|......+...+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt-~gLD~~~~~~l~~~l~ 187 (282)
T PRK13640 109 GLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDEST-SMLDPAGKEQILKLIR 187 (282)
T ss_pred hHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHH
Confidence 0 00 00000113445568999999999999999999999999998 7888888777666555
Q ss_pred Hhhhc-CceEEEEecccC
Q 012322 145 NLRAS-KLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~-~~~ii~~SAT~~ 161 (466)
..... +..+|+.|+.++
T Consensus 188 ~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 188 KLKKKNNLTVISITHDID 205 (282)
T ss_pred HHHHhcCCEEEEEecCHH
Confidence 44432 567888777664
No 354
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=3.1e-06 Score=81.87 Aligned_cols=138 Identities=20% Similarity=0.269 Sum_probs=83.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeC------ch----------hHHH--HHHHHHHH---HHhC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ------PR----------RVAA--VSVARRVA---QELG 74 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~------p~----------~~l~--~~~~~~~~---~~~~ 74 (466)
.+..|+.+.|.||+||||||++..+.+...++.|...+-.. |. ..+. ..+.+.++ +..+
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~ 107 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG 107 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC
Confidence 35689999999999999999999999988766554222111 00 0000 00111111 0000
Q ss_pred Cc----------cCCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 75 VR----------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 75 ~~----------~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
.. ....++. . ...+....-+|.|+.++..+.+..+.+++++++||+- ..+|......+...+.
T Consensus 108 ~~~~~~~~~v~~~l~~~gl----~--~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~ 180 (351)
T PRK11432 108 VPKEERKQRVKEALELVDL----A--GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPL-SNLDANLRRSMREKIR 180 (351)
T ss_pred CCHHHHHHHHHHHHHHcCC----c--hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHH
Confidence 00 0000000 0 0012234458999999999999999999999999998 7888888777555554
Q ss_pred Hhhhc-CceEEEEeccc
Q 012322 145 NLRAS-KLKILITSATL 160 (466)
Q Consensus 145 ~~~~~-~~~ii~~SAT~ 160 (466)
..... +..+|+.|+-.
T Consensus 181 ~l~~~~g~tii~vTHd~ 197 (351)
T PRK11432 181 ELQQQFNITSLYVTHDQ 197 (351)
T ss_pred HHHHhcCCEEEEEcCCH
Confidence 44332 56788877754
No 355
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.37 E-value=4.4e-07 Score=93.85 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=86.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-HHHH--------------HHHHhCCccCCe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARR--------------VAQELGVRLGEE 80 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-~~~~--------------~~~~~~~~~~~~ 80 (466)
.+..|+.+.|+||+||||||++..+++...+.+|...+...+.+....+ ..+. +.+.........
T Consensus 340 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~ 419 (544)
T TIGR01842 340 RLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENA 419 (544)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCC
Confidence 3568999999999999999999999998877666544333332211110 0000 011100000000
Q ss_pred -----------eeeeEeecc-----ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 81 -----------VGYAIRFED-----RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 81 -----------~g~~~~~~~-----~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
.+.....+. .........-.|.|+.++..+++..+.+.+++|+||+- ..+|......+.+.+.
T Consensus 420 ~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpt-s~LD~~~~~~i~~~l~ 498 (544)
T TIGR01842 420 DPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPN-SNLDEEGEQALANAIK 498 (544)
T ss_pred CHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cccCHHHHHHHHHHHH
Confidence 000000000 00001123348999999999999999999999999998 7888887777666665
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
.....+..+|+.|+-+.
T Consensus 499 ~~~~~~~tvi~ith~~~ 515 (544)
T TIGR01842 499 ALKARGITVVVITHRPS 515 (544)
T ss_pred HHhhCCCEEEEEeCCHH
Confidence 54433567788787764
No 356
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.37 E-value=1.4e-06 Score=90.73 Aligned_cols=144 Identities=19% Similarity=0.238 Sum_probs=88.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-HHHH--------------HHHHhCCccC--
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARR--------------VAQELGVRLG-- 78 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-~~~~--------------~~~~~~~~~~-- 78 (466)
.+..|+.+.|+||+||||||++..+++...+..|...+...+.+....+ ..+. +.+.......
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~ 441 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNA 441 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCcc
Confidence 3568999999999999999999999998887777655444333221111 1111 1111100000
Q ss_pred ---------CeeeeeEeeccccCcc----ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 79 ---------EEVGYAIRFEDRTSER----TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 79 ---------~~~g~~~~~~~~~~~~----~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
...+.....+....-+ ..-.-.+.|+.++..+++..+.+.+++|+||+- ..+|.+....+.+.+.+
T Consensus 442 ~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~t-s~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 442 SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPT-EGLDAETERQILELLAE 520 (574)
T ss_pred CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHH
Confidence 0000000000000001 122347999999999999999999999999998 78898887776666665
Q ss_pred hhhcCceEEEEecccC
Q 012322 146 LRASKLKILITSATLD 161 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~ 161 (466)
..+ +..+|+.|+-++
T Consensus 521 ~~~-~~tviiitHr~~ 535 (574)
T PRK11160 521 HAQ-NKTVLMITHRLT 535 (574)
T ss_pred HcC-CCEEEEEecChh
Confidence 543 667778777653
No 357
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.37 E-value=1.4e-06 Score=79.27 Aligned_cols=152 Identities=25% Similarity=0.300 Sum_probs=86.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcC---cCCCcEEEEeCchh----------------HHH-HHHHHHHH--HHh
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG---YTKSGIIGVTQPRR----------------VAA-VSVARRVA--QEL 73 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~---~~~~~~i~~~~p~~----------------~l~-~~~~~~~~--~~~ 73 (466)
.+..|+.+.++||+||||||++..+.+... +..|...+...+.. ... ..+.+.+. ...
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 108 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAIL 108 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHh
Confidence 357899999999999999999999998876 44443222111100 000 01111111 000
Q ss_pred CCccCCe-------eee-eE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 74 GVRLGEE-------VGY-AI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 74 ~~~~~~~-------~g~-~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
....... ... .. ........+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~-~gLD~~~~~~~~~~l~ 187 (226)
T cd03234 109 RLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPT-SGLDSFTALNLVSTLS 187 (226)
T ss_pred hcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCC-cCCCHHHHHHHHHHHH
Confidence 0000000 000 00 000000112344568999999999888889999999999998 7888888777666555
Q ss_pred HhhhcCceEEEEecccChhHHHhhc
Q 012322 145 NLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
+....+..+++.|+.+. +.+.++.
T Consensus 188 ~~~~~~~tiii~sh~~~-~~~~~~~ 211 (226)
T cd03234 188 QLARRNRIVILTIHQPR-SDLFRLF 211 (226)
T ss_pred HHHHCCCEEEEEecCCC-HHHHHhC
Confidence 54433566777777652 2344444
No 358
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=7.6e-07 Score=84.59 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=53.4
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
....-+|.|+.++..++...+.+++++++||+- ..+|......+++.+......+..+|+.|+.++ .+.++.
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~--~~~~~a 232 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPT-AGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD--NVLEWT 232 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH--HHHHhC
Confidence 345558999999999999999999999999998 788888776666655554433667788777653 344444
No 359
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=1.2e-06 Score=82.20 Aligned_cols=151 Identities=22% Similarity=0.272 Sum_probs=87.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh---HHHHHHHHHHH---HH-----hCCccCCee---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR---VAAVSVARRVA---QE-----LGVRLGEEV--- 81 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~---~l~~~~~~~~~---~~-----~~~~~~~~~--- 81 (466)
.+..|+.+.|+||+||||||++..+.+......|...+-..+.. ....+..+.+. +. +...+...+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~ 103 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFG 103 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHH
Confidence 35789999999999999999999999877665553322221110 00000000000 00 000000000
Q ss_pred ----eeeE-----e-------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 82 ----GYAI-----R-------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 82 ----g~~~-----~-------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
+... . ..-....+..+.-.|.|+.++..+....+.+++++++||+- ..+|......+++.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~ 182 (275)
T PRK13639 104 PLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT-SGLDPMGASQIMKLLYD 182 (275)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHH
Confidence 0000 0 00000112334458999999999999999999999999998 78888887776666655
Q ss_pred hhhcCceEEEEecccChhHHHhhc
Q 012322 146 LRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
....+..+++.|+.++ .+.++.
T Consensus 183 l~~~~~til~vtH~~~--~~~~~~ 204 (275)
T PRK13639 183 LNKEGITIIISTHDVD--LVPVYA 204 (275)
T ss_pred HHHCCCEEEEEecCHH--HHHHhC
Confidence 4433567888777653 334444
No 360
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.37 E-value=4.3e-06 Score=77.78 Aligned_cols=143 Identities=19% Similarity=0.227 Sum_probs=84.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc-----hhHH-HHHHH----HHH---HHHhC--C----cc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-----RRVA-AVSVA----RRV---AQELG--V----RL 77 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p-----~~~l-~~~~~----~~~---~~~~~--~----~~ 77 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+ .... ..+.. ..+ .+... . .+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~ 108 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSA 108 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccH
Confidence 67899999999999999999999999877665544333322 1000 00000 000 00000 0 00
Q ss_pred CCeeee-----eE---------------eeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHH
Q 012322 78 GEEVGY-----AI---------------RFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDIL 136 (466)
Q Consensus 78 ~~~~g~-----~~---------------~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~ 136 (466)
...+.+ .. .+.-. ...+....-.+.|+.++..+...++.+++++++||+- ..+|....
T Consensus 109 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt-~~LD~~~~ 187 (258)
T PRK11701 109 GGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPT-GGLDVSVQ 187 (258)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHH
Confidence 000000 00 00000 0112345568999999999999899999999999998 78888887
Q ss_pred HHHHHHHHHhhhc-CceEEEEeccc
Q 012322 137 LGLVKRLVNLRAS-KLKILITSATL 160 (466)
Q Consensus 137 ~~~l~~i~~~~~~-~~~ii~~SAT~ 160 (466)
..+++.+...... +..+|+.|+.+
T Consensus 188 ~~l~~~l~~~~~~~~~tii~isH~~ 212 (258)
T PRK11701 188 ARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 7765555544332 55677766654
No 361
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.37 E-value=4.1e-06 Score=76.71 Aligned_cols=144 Identities=21% Similarity=0.188 Sum_probs=84.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe----------------CchhHHH--HHHHHHHH---HHhCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT----------------QPRRVAA--VSVARRVA---QELGV 75 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~----------------~p~~~l~--~~~~~~~~---~~~~~ 75 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+.. .+...+. ..+.+.+. ...+.
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 101 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV 101 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC
Confidence 568999999999999999999999987766555322211 1100000 01111111 00000
Q ss_pred ccCCe---eee-eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-C
Q 012322 76 RLGEE---VGY-AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-K 150 (466)
Q Consensus 76 ~~~~~---~g~-~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~ 150 (466)
..... ... .....-....+..+.-.+.|+.++..+....+.+++++++||+. ..+|......+++.+...... +
T Consensus 102 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~~~~~~~ 180 (235)
T cd03299 102 DKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF-SALDVRTKEKLREELKKIRKEFG 180 (235)
T ss_pred CHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCc-ccCCHHHHHHHHHHHHHHHHhcC
Confidence 00000 000 00000000112334458999999999999999999999999999 788888877766655554332 5
Q ss_pred ceEEEEecccC
Q 012322 151 LKILITSATLD 161 (466)
Q Consensus 151 ~~ii~~SAT~~ 161 (466)
..+++.|+-++
T Consensus 181 ~tili~tH~~~ 191 (235)
T cd03299 181 VTVLHVTHDFE 191 (235)
T ss_pred CEEEEEecCHH
Confidence 67788777553
No 362
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.36 E-value=6.2e-07 Score=83.74 Aligned_cols=151 Identities=19% Similarity=0.193 Sum_probs=88.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHHHHHHHH---HHHhC----CccCCee-----e
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRV---AQELG----VRLGEEV-----G 82 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~~~~~~~---~~~~~----~~~~~~~-----g 82 (466)
.+.+|+.+.|+||+||||||++..+.+......|...+...+... ...+....+ .+... ..+.... .
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~ 108 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYP 108 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccc
Confidence 356899999999999999999999999877665543332222100 000000000 00000 0000000 0
Q ss_pred e-------eEee-----------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 83 Y-------AIRF-----------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 83 ~-------~~~~-----------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
. .... .-....+..+.-++.|+.++..+....+.+++++++||+- ..+|......+++.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt-~gLD~~~~~~l~~~L~ 187 (265)
T PRK10253 109 HQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPT-TWLDISHQIDLLELLS 187 (265)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHH
Confidence 0 0000 0000113445668999999999999999999999999998 7888887777666555
Q ss_pred Hhhhc-CceEEEEecccChhHHHhhc
Q 012322 145 NLRAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 145 ~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
..... +..+|+.|+.++ .+.++.
T Consensus 188 ~l~~~~~~tiii~tH~~~--~~~~~~ 211 (265)
T PRK10253 188 ELNREKGYTLAAVLHDLN--QACRYA 211 (265)
T ss_pred HHHHhcCCEEEEEeCCHH--HHHHhC
Confidence 54432 566777777543 344444
No 363
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.36 E-value=4.9e-07 Score=84.06 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=53.0
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
...-.+.|+.++..+....+.+++++++||+- ..+|......+.+.+.+....+..+++.|+.+ +.+..+.
T Consensus 149 ~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~--~~~~~~~ 219 (257)
T PRK10619 149 YPVHLSGGQQQRVSIARALAMEPEVLLFDEPT-SALDPELVGEVLRIMQQLAEEGKTMVVVTHEM--GFARHVS 219 (257)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHhc
Confidence 35568999999999999999999999999998 78888887776555554443366788877754 3344444
No 364
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.36 E-value=5.1e-07 Score=92.50 Aligned_cols=144 Identities=19% Similarity=0.125 Sum_probs=84.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHHHHHH----HHHHHhC----CccCCeeeeeEe-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVAR----RVAQELG----VRLGEEVGYAIR- 86 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~~~~~----~~~~~~~----~~~~~~~g~~~~- 86 (466)
+.+|+.+.|+||+||||||++..+.+...+..|...+...+... ...+..+ .+.+... ..+...+.+...
T Consensus 34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 113 (510)
T PRK15439 34 LHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK 113 (510)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc
Confidence 56899999999999999999999999876655543332211100 0000000 0000000 000000000000
Q ss_pred e--------------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCce
Q 012322 87 F--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (466)
Q Consensus 87 ~--------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (466)
. .-....+..+.-+|.|+.++..+...++.+++++++||+- ..+|......+.+.+......+..
T Consensus 114 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~g~t 192 (510)
T PRK15439 114 RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT-ASLTPAETERLFSRIRELLAQGVG 192 (510)
T ss_pred chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCE
Confidence 0 0000112344568999999999999999999999999988 788888877766655554443567
Q ss_pred EEEEecccC
Q 012322 153 ILITSATLD 161 (466)
Q Consensus 153 ii~~SAT~~ 161 (466)
+|+.|+.++
T Consensus 193 iiivtHd~~ 201 (510)
T PRK15439 193 IVFISHKLP 201 (510)
T ss_pred EEEEeCCHH
Confidence 777777543
No 365
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=1.6e-06 Score=81.78 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=88.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh---HHHHHHHHHHH---HH-----hCCccCCee---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR---VAAVSVARRVA---QE-----LGVRLGEEV--- 81 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~---~l~~~~~~~~~---~~-----~~~~~~~~~--- 81 (466)
.+..|+.+.|+||+||||||++..+.+...+..|...+...+.. ....+....+. +. +...+...+
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 107 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG 107 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhH
Confidence 35789999999999999999999999987766554333322210 00000000000 00 000000000
Q ss_pred ----eeeEe------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 82 ----GYAIR------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 82 ----g~~~~------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
+.... ..-....+..+.-+|.|+.++..+....+.+++++|+||+- ..+|......+++.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt-~gLD~~~~~~l~~~l~~ 186 (283)
T PRK13636 108 AVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPT-AGLDPMGVSEIMKLLVE 186 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHH
Confidence 00000 00000123455668999999999999999999999999998 78888887765555554
Q ss_pred hhhc-CceEEEEecccChhHHHhhc
Q 012322 146 LRAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 146 ~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
.... +..+++.|+-++ .+..+.
T Consensus 187 l~~~~g~tillvsH~~~--~~~~~~ 209 (283)
T PRK13636 187 MQKELGLTIIIATHDID--IVPLYC 209 (283)
T ss_pred HHHhCCCEEEEEecCHH--HHHHhC
Confidence 4432 567777777553 344444
No 366
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.36 E-value=5.3e-07 Score=93.90 Aligned_cols=143 Identities=17% Similarity=0.166 Sum_probs=87.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHHHHH--------------HHHHhCCccCC-
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARR--------------VAQELGVRLGE- 79 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~~~~--------------~~~~~~~~~~~- 79 (466)
.+.+|+.+.|+||+||||||++..+++...+.+|...+...+.+... .+..+. +.+........
T Consensus 357 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~ 436 (585)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGA 436 (585)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCC
Confidence 35689999999999999999999999988777665444333322111 011111 00100000000
Q ss_pred ----------eeeeeEeecc-----ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 80 ----------EVGYAIRFED-----RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 80 ----------~~g~~~~~~~-----~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
..+....... ...-.....-.|+|+.++..+++..+.+++++|+||+- ..+|.+....+.+.+.
T Consensus 437 ~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpt-s~LD~~~~~~i~~~l~ 515 (585)
T TIGR01192 437 TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEAT-SALDVETEARVKNAID 515 (585)
T ss_pred CHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHH
Confidence 0000000000 00001112337999999999999999999999999998 7899888777666665
Q ss_pred HhhhcCceEEEEeccc
Q 012322 145 NLRASKLKILITSATL 160 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~ 160 (466)
...+ +..+|+.|+-+
T Consensus 516 ~~~~-~~tvI~isH~~ 530 (585)
T TIGR01192 516 ALRK-NRTTFIIAHRL 530 (585)
T ss_pred HHhC-CCEEEEEEcCh
Confidence 5543 67788888765
No 367
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=8e-07 Score=83.51 Aligned_cols=145 Identities=21% Similarity=0.173 Sum_probs=86.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-----HH--------------H--HHHHHHHHH---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-----VA--------------A--VSVARRVAQ--- 71 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-----~l--------------~--~~~~~~~~~--- 71 (466)
.+.+|+.+.|.|++||||||++..+.+...+..|...+...+.. .. . ..+.+.+..
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~ 108 (277)
T PRK13642 29 SITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGME 108 (277)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHH
Confidence 35789999999999999999999999988766554333211110 00 0 001111100
Q ss_pred HhCCccCC---eeeeeEe-eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 72 ELGVRLGE---EVGYAIR-FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 72 ~~~~~~~~---~~g~~~~-~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
..+..... .+..... ..-....+..+.-.|.|+.++..++..++.+++++|+||+- ..+|......+++.+.+..
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~l~ 187 (277)
T PRK13642 109 NQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDEST-SMLDPTGRQEIMRVIHEIK 187 (277)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHH
Confidence 00000000 0000000 00000112345568999999999999999999999999998 7899888777666555444
Q ss_pred hc-CceEEEEecccC
Q 012322 148 AS-KLKILITSATLD 161 (466)
Q Consensus 148 ~~-~~~ii~~SAT~~ 161 (466)
.. +..+|+.|+.++
T Consensus 188 ~~~g~tiil~sH~~~ 202 (277)
T PRK13642 188 EKYQLTVLSITHDLD 202 (277)
T ss_pred HhcCCEEEEEeCCHH
Confidence 32 567888777665
No 368
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.36 E-value=5e-07 Score=96.59 Aligned_cols=141 Identities=20% Similarity=0.176 Sum_probs=87.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-HHHHHH--------------HHHhCCccCC-
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRV--------------AQELGVRLGE- 79 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-~~~~~~--------------~~~~~~~~~~- 79 (466)
.+..|+.+.|+||+||||||++..+++...+.+|...+...+.+..-. +..+.+ .+........
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~ 580 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTI 580 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCC
Confidence 356899999999999999999999999888877765544444322111 111111 1111000000
Q ss_pred ----------eeeeeEeeccccCc--cceE----EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 80 ----------EVGYAIRFEDRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 80 ----------~~g~~~~~~~~~~~--~~~i----~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
..|.. .+-..... ++.+ .-.|.|+.++..+++..+++++++++||+- ..+|......+++.+
T Consensus 581 ~~~~i~~al~~~~l~-~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEpt-S~LD~~te~~i~~~l 658 (710)
T TIGR03796 581 PDADLVRACKDAAIH-DVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEAT-SALDPETEKIIDDNL 658 (710)
T ss_pred CHHHHHHHHHHhCCH-HHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcc-ccCCHHHHHHHHHHH
Confidence 00000 00000000 1111 237999999999999999999999999998 788988877766666
Q ss_pred HHhhhcCceEEEEecccC
Q 012322 144 VNLRASKLKILITSATLD 161 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~~ 161 (466)
.+ .+..+|+.|+-++
T Consensus 659 ~~---~~~T~IiitHrl~ 673 (710)
T TIGR03796 659 RR---RGCTCIIVAHRLS 673 (710)
T ss_pred Hh---cCCEEEEEecCHH
Confidence 54 2667788777653
No 369
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=5.6e-06 Score=78.13 Aligned_cols=150 Identities=18% Similarity=0.191 Sum_probs=87.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh---------H---------------HH-HHHHHHHHH
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR---------V---------------AA-VSVARRVAQ 71 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~---------~---------------l~-~~~~~~~~~ 71 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+.. . +. ..+.+.+.-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~ 109 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIF 109 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHh
Confidence 5689999999999999999999999987766554332211110 0 00 011111100
Q ss_pred ---HhCCccCC---eeeeeE-eeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 72 ---ELGVRLGE---EVGYAI-RFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 72 ---~~~~~~~~---~~g~~~-~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
..+..... .+.... ...-. ...+..+.-.|.|+.++..+....+.+++++++||+- ..+|......++..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt-~~LD~~~~~~l~~~l 188 (286)
T PRK13646 110 GPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPT-AGLDPQSKRQVMRLL 188 (286)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHH
Confidence 00000000 000000 00000 0112445668999999999999999999999999998 788888877755555
Q ss_pred HHhhh-cCceEEEEecccChhHHHhhc
Q 012322 144 VNLRA-SKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 144 ~~~~~-~~~~ii~~SAT~~~~~~~~~~ 169 (466)
..... .+..+|+.|+-++ .+..+.
T Consensus 189 ~~l~~~~g~tvl~vtH~~~--~~~~~~ 213 (286)
T PRK13646 189 KSLQTDENKTIILVSHDMN--EVARYA 213 (286)
T ss_pred HHHHHhCCCEEEEEecCHH--HHHHhC
Confidence 54432 2577888777654 344443
No 370
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.35 E-value=4.5e-07 Score=96.49 Aligned_cols=138 Identities=20% Similarity=0.256 Sum_probs=85.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-HHHHH--------------HHHhCCccCCee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARRV--------------AQELGVRLGEEV 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-~~~~~--------------~~~~~~~~~~~~ 81 (466)
+..|+.+.|+|++||||||++..+++...+.+|...+...+.+..-.+ ..+.+ .+... .+...
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~--~~~~~ 553 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA--GGAPL 553 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHh--cCCCC
Confidence 568999999999999999999999999888777654444443221111 11110 00000 00000
Q ss_pred ee--------eEeecc---ccCc--cce----EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 82 GY--------AIRFED---RTSE--RTL----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 82 g~--------~~~~~~---~~~~--~~~----i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
.. ....++ .... ++. -.-.|+|+.++..+++..+.+.+++|+||+- ..+|......+.+.+.
T Consensus 554 ~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpT-S~LD~~te~~i~~~L~ 632 (686)
T TIGR03797 554 TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT-SALDNRTQAIVSESLE 632 (686)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHH
Confidence 00 000000 0000 011 1237999999999999999999999999998 7889888777666665
Q ss_pred HhhhcCceEEEEeccc
Q 012322 145 NLRASKLKILITSATL 160 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~ 160 (466)
+. +..+|+.|+-+
T Consensus 633 ~~---~~T~IiItHr~ 645 (686)
T TIGR03797 633 RL---KVTRIVIAHRL 645 (686)
T ss_pred Hh---CCeEEEEecCh
Confidence 43 34677777765
No 371
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.34 E-value=6.4e-07 Score=83.56 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=50.9
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceEEEEecccC
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SAT~~ 161 (466)
..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+..... .+..+|+.|+.++
T Consensus 148 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~ 214 (262)
T PRK09984 148 QRVSTLSGGQQQRVAIARALMQQAKVILADEPI-ASLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214 (262)
T ss_pred CCccccCHHHHHHHHHHHHHhcCCCEEEecCcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 345558999999999998889999999999998 78888887776555555443 2567888777654
No 372
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.34 E-value=2.4e-06 Score=79.29 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=49.1
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-CceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.+.-+|.|+.++..+....+.+++++|+||+- ..+|......+++.+...... +..+++.|+.++
T Consensus 137 ~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt-~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~ 202 (254)
T PRK10418 137 YPFEMSGGMLQRMMIALALLCEAPFIIADEPT-TDLDVVAQARILDLLESIVQKRALGMLLVTHDMG 202 (254)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 34558999999999999999999999999998 788888766655555444332 567777777543
No 373
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.34 E-value=7.4e-07 Score=95.21 Aligned_cols=142 Identities=21% Similarity=0.243 Sum_probs=87.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-HHHH--------------HHHHhCCccCCee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARR--------------VAQELGVRLGEEV 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-~~~~--------------~~~~~~~~~~~~~ 81 (466)
+..|+.+.|+||+||||||++..+++...+++|...+-..+.+..-.+ ..+. +.+..........
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~ 576 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENV 576 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCC
Confidence 568999999999999999999999998887777655544443222111 1111 1111100000000
Q ss_pred ee-e-------Eeec---cccCc--cceE----EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 82 GY-A-------IRFE---DRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 82 g~-~-------~~~~---~~~~~--~~~i----~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
.. . ...+ ..... ++.+ .-.|.|+.++..+++..+++++++|+||+- ..+|.+....+.+.+.
T Consensus 577 ~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~T-s~LD~~te~~i~~~L~ 655 (708)
T TIGR01193 577 SQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDEST-SNLDTITEKKIVNNLL 655 (708)
T ss_pred CHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcc-ccCCHHHHHHHHHHHH
Confidence 00 0 0000 00000 1111 227899999999999999999999999998 7888888777666665
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
+. + +..+|+.|+-++
T Consensus 656 ~~-~-~~T~IiitHr~~ 670 (708)
T TIGR01193 656 NL-Q-DKTIIFVAHRLS 670 (708)
T ss_pred Hh-c-CCEEEEEecchH
Confidence 53 3 567777787664
No 374
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.33 E-value=1e-06 Score=82.66 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=82.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcE-----EEEeCchhHHH-HHHHHHHHHHhCCccCC--------eee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGVTQPRRVAA-VSVARRVAQELGVRLGE--------EVG 82 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~-----i~~~~p~~~l~-~~~~~~~~~~~~~~~~~--------~~g 82 (466)
+..|+.+.|.||+||||||++..+++...+..|.. +.++.....+. ..+.+.+. ++..... ..+
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~--~~~~~~~~~~~~~l~~~~ 137 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENII--FGVSYDEYRYKSVVKACQ 137 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhh--cccccCHHHHHHHHHHhC
Confidence 57899999999999999999999999877665542 22222111100 01111110 0000000 000
Q ss_pred eeEeecccc-----CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 83 YAIRFEDRT-----SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 83 ~~~~~~~~~-----~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
......... .......-+++|+.++..+....+.+++++|+||+- ..+|......+++.++.....+..+|+.|
T Consensus 138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt-~gLD~~~~~~l~~~ll~~~~~~~tIiiis 216 (282)
T cd03291 138 LEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF-GYLDVFTEKEIFESCVCKLMANKTRILVT 216 (282)
T ss_pred CHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 000000000 001123458999999999999999999999999998 78888776665555443332356777777
Q ss_pred cccC
Q 012322 158 ATLD 161 (466)
Q Consensus 158 AT~~ 161 (466)
+.+.
T Consensus 217 H~~~ 220 (282)
T cd03291 217 SKME 220 (282)
T ss_pred CChH
Confidence 7654
No 375
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.33 E-value=2e-06 Score=87.91 Aligned_cols=144 Identities=18% Similarity=0.205 Sum_probs=87.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-HHHHHHHHHHH---HHh------------CCccCC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-VAAVSVARRVA---QEL------------GVRLGE 79 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-~l~~~~~~~~~---~~~------------~~~~~~ 79 (466)
.+.+|+.+.|+||+||||||++..+.+...+..|...+...+.. .......+.+. +.. +..+..
T Consensus 25 ~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 104 (490)
T PRK10938 25 TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAE 104 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHH
Confidence 35689999999999999999999999987776665433222210 00011111111 000 001100
Q ss_pred eeeeeEeecc-----------ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 80 EVGYAIRFED-----------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 80 ~~g~~~~~~~-----------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
.......... ....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+...
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~ 183 (490)
T PRK10938 105 IIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF-DGLDVASRQQLAELLASLHQ 183 (490)
T ss_pred hcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHh
Confidence 0000000000 00113445668999999999999999999999999998 78888887776666555444
Q ss_pred cCceEEEEeccc
Q 012322 149 SKLKILITSATL 160 (466)
Q Consensus 149 ~~~~ii~~SAT~ 160 (466)
.+..+|+.|+.+
T Consensus 184 ~g~tvii~tH~~ 195 (490)
T PRK10938 184 SGITLVLVLNRF 195 (490)
T ss_pred cCCeEEEEeCCH
Confidence 356777777754
No 376
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.32 E-value=2.7e-06 Score=78.91 Aligned_cols=144 Identities=20% Similarity=0.251 Sum_probs=84.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc-----hh-HHHHHHH----HHH---HHHh--CCccCC-
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-----RR-VAAVSVA----RRV---AQEL--GVRLGE- 79 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p-----~~-~l~~~~~----~~~---~~~~--~~~~~~- 79 (466)
.+.+|+.+.|.||+||||||++..+.+...+..|...+-..+ .. ....+.. +.+ .+.. ......
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 104 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVS 104 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCcccc
Confidence 357899999999999999999999999877665544433222 00 0000000 000 0000 000000
Q ss_pred ---ee-------eee---E----------eeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHH
Q 012322 80 ---EV-------GYA---I----------RFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI 135 (466)
Q Consensus 80 ---~~-------g~~---~----------~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~ 135 (466)
.+ +.. . ...-. ...+..+.-+|.|+.++..++...+.+++++++||+- ..+|...
T Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~-~~LD~~~ 183 (253)
T TIGR02323 105 AGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPT-GGLDVSV 183 (253)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHH
Confidence 00 000 0 00000 0112344558999999999999999999999999998 7888887
Q ss_pred HHHHHHHHHHhhh-cCceEEEEeccc
Q 012322 136 LLGLVKRLVNLRA-SKLKILITSATL 160 (466)
Q Consensus 136 ~~~~l~~i~~~~~-~~~~ii~~SAT~ 160 (466)
...+++.+.+... .+..+|+.|+.+
T Consensus 184 ~~~l~~~l~~~~~~~~~tii~vsH~~ 209 (253)
T TIGR02323 184 QARLLDLLRGLVRDLGLAVIIVTHDL 209 (253)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 7776555554433 256778877754
No 377
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.32 E-value=0.00026 Score=69.45 Aligned_cols=233 Identities=15% Similarity=0.060 Sum_probs=147.9
Q ss_pred cceEEEcCHHHHHHHHhh------CC-CCCCCcEEEecCCCc-cccCHHHHHHHHHHHHHhhh-----------------
Q 012322 94 RTLIKYLTDGVLLREILS------NP-DLSPYSVIILDEAHE-RSLNTDILLGLVKRLVNLRA----------------- 148 (466)
Q Consensus 94 ~~~i~~~T~g~l~~~~~~------~~-~l~~~~~iIiDEah~-~~~~~~~~~~~l~~i~~~~~----------------- 148 (466)
.++|+++||=-|...+-. +. +++.+.++|+|.+|. .+-+.+.+..+++.+-..-.
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 589999999766655542 11 688999999999994 22234444444443322111
Q ss_pred ---cCceEEEEecccChhH---HHhhcCCC-CeE----------eeCCCcCceeeeecCCCCCc---hHHHH----HHHH
Q 012322 149 ---SKLKILITSATLDGEK---VSKFFSNC-PTL----------NVPGKLYPVEILHSKERPTS---YLESA----LKTA 204 (466)
Q Consensus 149 ---~~~~ii~~SAT~~~~~---~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~ 204 (466)
.-.|.|++|+..+++. +...+.|. -.+ .+..-..++...+...+..+ ..+.. .+.+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 1258999999987753 33333221 111 11112223333343222211 11111 2233
Q ss_pred HHHhh-cCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecc-
Q 012322 205 IDIHV-REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI- 282 (466)
Q Consensus 205 ~~~~~-~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~- 282 (466)
+..+. ....+.+|||+||.-+=..+-.+|++. ++....+|--.+..+-.++-..|..|+.+|++-|.=
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~----------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~ 360 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE----------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERF 360 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhc----------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHH
Confidence 33333 455679999999999999999999865 777888888888888777888899999999999963
Q ss_pred -cccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCC----CCCCeEEEecCccchhh
Q 012322 283 -AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR----TRPGKCYRLYPSTVYHD 351 (466)
Q Consensus 283 -~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR----~~~G~~~~l~~~~~~~~ 351 (466)
.=+=..+.+++.||-||.|..+.|. .++..+.+.... ..+..|..||++-+...
T Consensus 361 HFfrRy~irGi~~viFY~~P~~p~fY---------------~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 361 HFFRRYRIRGIRHVIFYGPPENPQFY---------------SELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred hhhhhceecCCcEEEEECCCCChhHH---------------HHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 2345568889999999988766543 344444443332 15678999999987655
No 378
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=4.2e-06 Score=80.29 Aligned_cols=63 Identities=17% Similarity=0.329 Sum_probs=51.0
Q ss_pred EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceEEEEecccC
Q 012322 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (466)
Q Consensus 98 ~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SAT~~ 161 (466)
--+|.|+.++..++...+.+++++|+||+- ..+|......+++.+..... .+..+|+.|+-++
T Consensus 152 ~~LSgGq~QRv~iArAL~~~P~llilDEPt-s~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 152 HQLSGGMSQRVMIAMAIACRPKLLIADEPT-TALDVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 348999999999999999999999999998 78998887776666665543 2677888888664
No 379
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.32 E-value=1.5e-06 Score=89.92 Aligned_cols=144 Identities=17% Similarity=0.136 Sum_probs=87.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-HHHHHHH---H---HhCCccCCeeeeeEe--
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---Q---ELGVRLGEEVGYAIR-- 86 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-~~~~~~~---~---~~~~~~~~~~g~~~~-- 86 (466)
.+.+|+.+.|+||+||||||++..+.+...+++|...+...+.+.... +..+.++ + .+.............
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~ 443 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLD 443 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHH
Confidence 456899999999999999999999999888777665444333222111 1111110 0 000000000000000
Q ss_pred ----------eccc---cCcc-ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh-hhcCc
Q 012322 87 ----------FEDR---TSER-TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL-RASKL 151 (466)
Q Consensus 87 ----------~~~~---~~~~-~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~-~~~~~ 151 (466)
.+.. .... ....-.+.|+.++..+.+..+.+.+++|+||+- ..+|.+....+.+.+.+. ...+.
T Consensus 444 ~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~t-s~LD~~~~~~i~~~l~~~~~~~~~ 522 (555)
T TIGR01194 444 NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWA-ADQDPAFKRFFYEELLPDLKRQGK 522 (555)
T ss_pred HHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCC
Confidence 0000 0000 012458999999999999999999999999998 788888877766666532 22367
Q ss_pred eEEEEeccc
Q 012322 152 KILITSATL 160 (466)
Q Consensus 152 ~ii~~SAT~ 160 (466)
.+|+.|+-+
T Consensus 523 tiiiisH~~ 531 (555)
T TIGR01194 523 TIIIISHDD 531 (555)
T ss_pred EEEEEeccH
Confidence 788888865
No 380
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.32 E-value=2e-06 Score=80.33 Aligned_cols=145 Identities=20% Similarity=0.207 Sum_probs=83.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HH------------------------HHHHHHH
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AV------------------------SVARRVA 70 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~------------------------~~~~~~~ 70 (466)
.+..|+.+.|.||+||||||++..+++...+..|...+-..+.... .. .+.+.+.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~ 112 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG 112 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHH
Confidence 3578999999999999999999999998766555433322111000 00 0000000
Q ss_pred ---HHh-CCccCC---eee-eeEeeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 71 ---QEL-GVRLGE---EVG-YAIRFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 71 ---~~~-~~~~~~---~~g-~~~~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
... +..... .+. ......-. ...+..+.-++.|+.++..+....+.+++++++||+- ..+|......+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt-~~LD~~~~~~l~~ 191 (265)
T TIGR02769 113 EPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAV-SNLDMVLQAVILE 191 (265)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHH
Confidence 000 000000 000 00000000 0012344558899999999998899999999999998 7888887666555
Q ss_pred HHHHhhhc-CceEEEEecccC
Q 012322 142 RLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 142 ~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.+...... +..+|+.|+.++
T Consensus 192 ~l~~~~~~~g~tiiivsH~~~ 212 (265)
T TIGR02769 192 LLRKLQQAFGTAYLFITHDLR 212 (265)
T ss_pred HHHHHHHhcCcEEEEEeCCHH
Confidence 55554432 566777777543
No 381
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=2.2e-06 Score=80.91 Aligned_cols=151 Identities=15% Similarity=0.167 Sum_probs=86.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh---------H---------------HH-HHHHHHHH
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR---------V---------------AA-VSVARRVA 70 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~---------~---------------l~-~~~~~~~~ 70 (466)
.+..|+.+.|.||+||||||++..+.+...+..|...+...+.. . .. ..+.+.+.
T Consensus 29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~ 108 (287)
T PRK13641 29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVE 108 (287)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHH
Confidence 35689999999999999999999999987766554332221100 0 00 00111110
Q ss_pred --HH-hCCccCC---eeeeeE-eeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHH
Q 012322 71 --QE-LGVRLGE---EVGYAI-RFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (466)
Q Consensus 71 --~~-~~~~~~~---~~g~~~-~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~ 142 (466)
.. .+..... .+.... ...-. ...+..+.-+|.|+.++..+...++.+++++|+||+- ..+|......+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt-~gLD~~~~~~l~~~ 187 (287)
T PRK13641 109 FGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA-AGLDPEGRKEMMQL 187 (287)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCC-CCCCHHHHHHHHHH
Confidence 00 0000000 000000 00000 0113345568999999999999999999999999998 78888877665555
Q ss_pred HHHhhhcCceEEEEecccChhHHHhhc
Q 012322 143 LVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 143 i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
+......+..+|+.|+-+ +.+..+.
T Consensus 188 l~~l~~~g~tvlivsH~~--~~~~~~~ 212 (287)
T PRK13641 188 FKDYQKAGHTVILVTHNM--DDVAEYA 212 (287)
T ss_pred HHHHHhCCCEEEEEeCCH--HHHHHhC
Confidence 544433356777766644 3344443
No 382
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=9.5e-07 Score=81.82 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=50.2
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
..+.-.|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+... +..+|+.|+.++
T Consensus 142 ~~~~~LSgG~~qrv~laral~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 206 (250)
T PRK14247 142 APAGKLSGGQQQRLCIARALAFQPEVLLADEPT-ANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ 206 (250)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 344568999999999999999999999999998 78888887776665555443 566777777543
No 383
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.31 E-value=3.8e-06 Score=83.57 Aligned_cols=159 Identities=20% Similarity=0.223 Sum_probs=95.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHH---------HhCCccCCeeeeeE-
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ---------ELGVRLGEEVGYAI- 85 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~---------~~~~~~~~~~g~~~- 85 (466)
.+.+|+.+.|+|++||||||++..+++...++.|...+...+.... ....+++.. ........+++...
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~-~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~ 391 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT-GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILA 391 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc-cchhhhhhhheEEEEeCcccccCccccHHHHHH
Confidence 3578999999999999999999999998887666555555441000 100000000 00011111111000
Q ss_pred ---eeccc---------c---------C---ccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 86 ---RFEDR---------T---------S---ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 86 ---~~~~~---------~---------~---~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
..... . . .+..---.|.|+.+|..+++.+..++++||.||+- ..+|......+++
T Consensus 392 epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~-SaLDvsvqa~Vln 470 (539)
T COG1123 392 EPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPV-SALDVSVQAQVLN 470 (539)
T ss_pred hHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCc-cccCHHHHHHHHH
Confidence 00000 0 0 00011126888999999999999999999999998 6788887666655
Q ss_pred HHHHhhhc-CceEEEEecccChhHHHhhcCCCCeEeeCC
Q 012322 142 RLVNLRAS-KLKILITSATLDGEKVSKFFSNCPTLNVPG 179 (466)
Q Consensus 142 ~i~~~~~~-~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~ 179 (466)
-+.....+ +...++.|+.+. +-+++.+...+...|
T Consensus 471 Ll~~lq~e~g~t~lfISHDl~---vV~~i~drv~vm~~G 506 (539)
T COG1123 471 LLKDLQEELGLTYLFISHDLA---VVRYIADRVAVMYDG 506 (539)
T ss_pred HHHHHHHHhCCEEEEEeCCHH---HHHhhCceEEEEECC
Confidence 55554432 689999999876 555555544444444
No 384
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.31 E-value=4.4e-06 Score=69.50 Aligned_cols=141 Identities=18% Similarity=0.191 Sum_probs=90.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeee-------------
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG------------- 82 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g------------- 82 (466)
.+..|+.+.|+||+||||||++..+.+....++|...+..+|..-+-++....+. +..++...-
T Consensus 32 ~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R---~~~vGfVFQSF~Lip~ltAlEN 108 (228)
T COG4181 32 VVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALR---ARHVGFVFQSFHLIPNLTALEN 108 (228)
T ss_pred EecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhh---ccceeEEEEeeeccccchhhhh
Confidence 3568999999999999999999999999988888888888886555444433332 111111100
Q ss_pred --ee--EeeccccCc-------------cceE----EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 83 --YA--IRFEDRTSE-------------RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 83 --~~--~~~~~~~~~-------------~~~i----~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
.. ...+..... ..++ .-++.|.-++..+++.+...+++++-||.. -++|...-..+..
T Consensus 109 V~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPT-GNLD~~Tg~~iaD 187 (228)
T COG4181 109 VALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPT-GNLDRATGDKIAD 187 (228)
T ss_pred ccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCC-CCcchhHHHHHHH
Confidence 00 000000000 0000 116788889999999999999999999998 6777776555444
Q ss_pred HHHHhhh-cCceEEEEeccc
Q 012322 142 RLVNLRA-SKLKILITSATL 160 (466)
Q Consensus 142 ~i~~~~~-~~~~ii~~SAT~ 160 (466)
-+..... ....+|++|+..
T Consensus 188 LlF~lnre~G~TlVlVTHD~ 207 (228)
T COG4181 188 LLFALNRERGTTLVLVTHDP 207 (228)
T ss_pred HHHHHhhhcCceEEEEeCCH
Confidence 4443322 366788877754
No 385
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.31 E-value=7.2e-07 Score=82.26 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=47.6
Q ss_pred cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
+|.|+.++..+....+.+.+++++||+- ..+|......+++.+.+....+..+|+.|+.+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~ 204 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEID-SGLDIDALKIVAEGINRLREPDRSFLIITHYQ 204 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH
Confidence 8999999999999899999999999998 78888887776666655443356677777754
No 386
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.30 E-value=2e-06 Score=80.40 Aligned_cols=144 Identities=19% Similarity=0.232 Sum_probs=82.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH----HHHHHHH---HHH----hC--CccCCee-
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA----VSVARRV---AQE----LG--VRLGEEV- 81 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~----~~~~~~~---~~~----~~--~~~~~~~- 81 (466)
.+.+|+.+.|.||+||||||++..+.+...+..|...+...+..... ....+.+ .+. +. ..+....
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~ 113 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIR 113 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHH
Confidence 35689999999999999999999999887665554332221110000 0000000 000 00 0000000
Q ss_pred -------eeeE------------eeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 82 -------GYAI------------RFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 82 -------g~~~------------~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
+... ...-. ...+....-++.|+.++..+....+.+++++++||+- ..+|......+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~~~~ 192 (268)
T PRK10419 114 EPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAV-SNLDLVLQAGVIR 192 (268)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCC-cccCHHHHHHHHH
Confidence 0000 00000 0112344458999999999999899999999999998 7888887666555
Q ss_pred HHHHhhhc-CceEEEEeccc
Q 012322 142 RLVNLRAS-KLKILITSATL 160 (466)
Q Consensus 142 ~i~~~~~~-~~~ii~~SAT~ 160 (466)
.+...... +..+|+.|+.+
T Consensus 193 ~l~~~~~~~~~tiiivsH~~ 212 (268)
T PRK10419 193 LLKKLQQQFGTACLFITHDL 212 (268)
T ss_pred HHHHHHHHcCcEEEEEECCH
Confidence 55444332 56778877754
No 387
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.30 E-value=6.5e-07 Score=91.58 Aligned_cols=151 Identities=21% Similarity=0.221 Sum_probs=87.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch-----hHHHHHHHHHHHHHh----CCccCCeeeee--
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-----RVAAVSVARRVAQEL----GVRLGEEVGYA-- 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~-----~~l~~~~~~~~~~~~----~~~~~~~~g~~-- 84 (466)
.+..|+.+.|+||+||||||++..+++...+..|...+...+. .....+....+.+.. ...+...+.+.
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 105 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGRE 105 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccc
Confidence 3568999999999999999999999998776655543322211 000000000000000 00000000000
Q ss_pred -------Eeec--------------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 85 -------IRFE--------------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 85 -------~~~~--------------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
.... -....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l 184 (501)
T PRK10762 106 FVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPT-DALTDTETESLFRVI 184 (501)
T ss_pred cccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-CCCCHHHHHHHHHHH
Confidence 0000 000112344568999999999999999999999999988 788888777765555
Q ss_pred HHhhhcCceEEEEecccChhHHHhhc
Q 012322 144 VNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
......+..+|+.|+.+ +.+..+.
T Consensus 185 ~~l~~~~~tvii~sHd~--~~~~~~~ 208 (501)
T PRK10762 185 RELKSQGRGIVYISHRL--KEIFEIC 208 (501)
T ss_pred HHHHHCCCEEEEEeCCH--HHHHHhC
Confidence 55443355677777654 3444444
No 388
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=5.7e-06 Score=80.76 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=82.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc------hh----------HHH--HHHHHHHHHH---hCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP------RR----------VAA--VSVARRVAQE---LGV 75 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p------~~----------~l~--~~~~~~~~~~---~~~ 75 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+-..+ .+ .+. ..+.+.++-. .+.
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~ 121 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL 121 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC
Confidence 56899999999999999999999999876655532221110 00 000 0011111100 000
Q ss_pred ccC---CeeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cC
Q 012322 76 RLG---EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SK 150 (466)
Q Consensus 76 ~~~---~~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~ 150 (466)
... ..+.... ...-....+....-+|.|+.++..+.+....+++++++||+- ..+|......+...+.+... .+
T Consensus 122 ~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g 200 (377)
T PRK11607 122 PKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM-GALDKKLRDRMQLEVVDILERVG 200 (377)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcC
Confidence 000 0000000 000000112334458999999999999999999999999998 78888876665444444332 25
Q ss_pred ceEEEEeccc
Q 012322 151 LKILITSATL 160 (466)
Q Consensus 151 ~~ii~~SAT~ 160 (466)
..+|+.|+..
T Consensus 201 ~tii~vTHd~ 210 (377)
T PRK11607 201 VTCVMVTHDQ 210 (377)
T ss_pred CEEEEEcCCH
Confidence 6777777654
No 389
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.30 E-value=5.8e-07 Score=87.00 Aligned_cols=143 Identities=20% Similarity=0.157 Sum_probs=83.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH----------------HH--HHHHHHHHHHhCCcc-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------AA--VSVARRVAQELGVRL- 77 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~----------------l~--~~~~~~~~~~~~~~~- 77 (466)
+.+|+.+.|.||+||||||++..+++...++.|...+-..+... +. ..+.+.+.-......
T Consensus 25 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~ 104 (353)
T PRK10851 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPR 104 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccc
Confidence 56899999999999999999999999877665543221111000 00 001111110000000
Q ss_pred --CC-------eeee-eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 78 --GE-------EVGY-AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 78 --~~-------~~g~-~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
.. .+.. .....-....+....-+|.|+.++..+.+..+.+++++++||+- ..+|......+.+.+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~-s~LD~~~r~~l~~~L~~l~ 183 (353)
T PRK10851 105 RERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPF-GALDAQVRKELRRWLRQLH 183 (353)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHH
Confidence 00 0000 00000000112334558999999999999999999999999998 7888888776555555444
Q ss_pred hc-CceEEEEeccc
Q 012322 148 AS-KLKILITSATL 160 (466)
Q Consensus 148 ~~-~~~ii~~SAT~ 160 (466)
.. +..+|+.|+-+
T Consensus 184 ~~~g~tii~vTHd~ 197 (353)
T PRK10851 184 EELKFTSVFVTHDQ 197 (353)
T ss_pred HhcCCEEEEEeCCH
Confidence 32 46777777654
No 390
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.29 E-value=4.9e-06 Score=86.12 Aligned_cols=142 Identities=18% Similarity=0.141 Sum_probs=85.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHHHHHH---HH---HhCCccCCeeeeeE----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRV---AQ---ELGVRLGEEVGYAI---- 85 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~~~~~---~~---~~~~~~~~~~g~~~---- 85 (466)
+..|+.+.|+||+||||||++..+++...+..|...+...+.+... .+..+.+ .+ .++...... +...
T Consensus 346 i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~~~~~~~~ 424 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-GKPANPAL 424 (547)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc-cCchHHHH
Confidence 5689999999999999999999999988776665444333322110 0111110 00 000000000 0000
Q ss_pred --------eecccc-Cccc--eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceE
Q 012322 86 --------RFEDRT-SERT--LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKI 153 (466)
Q Consensus 86 --------~~~~~~-~~~~--~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~i 153 (466)
...... ..+. +=.-.+.|+.++..+++..+.+.+++|+||+- ..+|......+.+.+....+ .+..+
T Consensus 425 ~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t-s~LD~~~~~~i~~~l~~~~~~~~~tv 503 (547)
T PRK10522 425 VEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA-ADQDPHFRREFYQVLLPLLQEMGKTI 503 (547)
T ss_pred HHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 000000 0000 01237899999999999999999999999998 78888877766666654432 25678
Q ss_pred EEEeccc
Q 012322 154 LITSATL 160 (466)
Q Consensus 154 i~~SAT~ 160 (466)
|+.|+-+
T Consensus 504 i~itH~~ 510 (547)
T PRK10522 504 FAISHDD 510 (547)
T ss_pred EEEEech
Confidence 8888865
No 391
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.29 E-value=1.8e-06 Score=80.58 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=48.0
Q ss_pred cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.+.|+.++..+.+..+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-++
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpt-s~LD~~~~~~l~~~l~~~~~-~~tii~isH~~~ 198 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPS-AHLDPITYQVIRKTLKQAFA-DCTVILSEHRIE 198 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEECCHH
Confidence 8999999999999999999999999998 78888877765555554443 667777777653
No 392
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.29 E-value=5.3e-06 Score=79.69 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=50.6
Q ss_pred EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-CceEEEEecccC
Q 012322 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 98 ~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.-+|.|+.++..++...+.+++++|+||+- ..+|......+++.+...... +..+|+.|+-++
T Consensus 160 ~~LSgG~~QRv~IArAL~~~P~llilDEPt-s~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 160 HEFSGGMRQRVMIAMALLCRPKLLIADEPT-TALDVTVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 347999999999999999999999999998 788988877766655554432 577888888664
No 393
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.28 E-value=2.1e-06 Score=80.26 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=49.0
Q ss_pred ceEEEcCHHHHHHHHhhCCCC---------CCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-CceEEEEecccC
Q 012322 95 TLIKYLTDGVLLREILSNPDL---------SPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l---------~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SAT~~ 161 (466)
..+.-+|.|+.++..+....+ .+.+++++||+- ..+|......+++.+.+.... +..+|+.|+.++
T Consensus 141 ~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~ 216 (272)
T PRK13547 141 RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT-AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN 216 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 345568899999988887766 489999999998 788888877766655554432 567788777653
No 394
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.28 E-value=5.4e-06 Score=75.84 Aligned_cols=180 Identities=20% Similarity=0.251 Sum_probs=105.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeC-----chhHHH---HHHHHHHHHHhCCc----cCCeeeee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ-----PRRVAA---VSVARRVAQELGVR----LGEEVGYA 84 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~-----p~~~l~---~~~~~~~~~~~~~~----~~~~~g~~ 84 (466)
+.+|++++|.|=+||||||++.++-....++.|...+-.. ....+. .....-+.+.++.. +..+++|.
T Consensus 51 v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fG 130 (386)
T COG4175 51 VEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFG 130 (386)
T ss_pred ecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcc
Confidence 5689999999999999999999998888887665443221 112221 11111234555443 33344444
Q ss_pred EeeccccC-------------------ccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 85 IRFEDRTS-------------------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 85 ~~~~~~~~-------------------~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
........ .+...--+|.|+.++.-+++.+..+.+++++||+- ..+|+-...++-..++.
T Consensus 131 Lev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaF-SALDPLIR~~mQdeLl~ 209 (386)
T COG4175 131 LEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAF-SALDPLIRTEMQDELLE 209 (386)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCch-hhcChHHHHHHHHHHHH
Confidence 33221110 01222337999999999999999999999999998 56666554444344433
Q ss_pred hhh-cCceEEEEecccChhH-HH---hhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHH
Q 012322 146 LRA-SKLKILITSATLDGEK-VS---KFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALK 202 (466)
Q Consensus 146 ~~~-~~~~ii~~SAT~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (466)
... -+..+++.|+.++... +. .++.+..++++... -++ ...+..+|+...+.
T Consensus 210 Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp---~eI--l~~PAndYV~~Fv~ 266 (386)
T COG4175 210 LQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTP---EEI--LLNPANDYVRDFVR 266 (386)
T ss_pred HHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCH---HHH--HcCccHHHHHHHHh
Confidence 322 1567999999887432 22 23445555554432 111 22345566655443
No 395
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.27 E-value=3.2e-06 Score=74.89 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=43.2
Q ss_pred hHhHHHHHHHHh-cC-CEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHH
Q 012322 7 LQYEETIVETVE-QN-PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR 68 (466)
Q Consensus 7 ~~~q~~i~~~i~-~~-~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~ 68 (466)
.+-|.+++..+. ++ +..+|.||.|+||||++..+...... .+.+++++.|+..++..+.+.
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~-~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEA-AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHH-TT--EEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHh-CCCeEEEECCcHHHHHHHHHh
Confidence 456778888774 33 47888999999999888776554443 357889999998887776554
No 396
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.27 E-value=2.4e-05 Score=65.50 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=29.3
Q ss_pred hHHHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 9 YEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 9 ~q~~i~~~i~~--~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
..+.+...+.. +..+++.||+|+|||+++..+.....
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34455666666 78899999999999999988887664
No 397
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.27 E-value=1.2e-06 Score=81.18 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=48.7
Q ss_pred cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
+|.|+.++..+....+.+++++++||+- ..+|......+.+.+......+..+|+.|+.++
T Consensus 152 LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 152 FSGGEKKRNEILQMALLDSELAILDETD-SGLDIDALKIIAEGINKLMTSENSIILITHYQR 212 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 8999999999999999999999999998 788888877766655554433567788777653
No 398
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=2.8e-06 Score=80.43 Aligned_cols=150 Identities=20% Similarity=0.159 Sum_probs=86.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc-----------------------hh--HHH-HHHHHHHH
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-----------------------RR--VAA-VSVARRVA 70 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p-----------------------~~--~l~-~~~~~~~~ 70 (466)
+..|+.+.|.||+||||||++..+++...+..|...+...+ .. .+. ..+.+.+.
T Consensus 34 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~ 113 (289)
T PRK13645 34 FKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIA 113 (289)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHH
Confidence 56899999999999999999999999876554432221111 00 000 01111111
Q ss_pred --HH-hCCccC---CeeeeeE-eecc-ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHH
Q 012322 71 --QE-LGVRLG---EEVGYAI-RFED-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (466)
Q Consensus 71 --~~-~~~~~~---~~~g~~~-~~~~-~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~ 142 (466)
.. .+.... ..+.... ...- ....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt-~~LD~~~~~~l~~~ 192 (289)
T PRK13645 114 FGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT-GGLDPKGEEDFINL 192 (289)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHH
Confidence 00 000000 0000000 0000 00112345568999999999999999999999999998 78888887766555
Q ss_pred HHHhhhc-CceEEEEecccChhHHHhhc
Q 012322 143 LVNLRAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 143 i~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
+...... +..+|+.|+.++ .+.++.
T Consensus 193 l~~~~~~~~~tiiiisH~~~--~~~~~~ 218 (289)
T PRK13645 193 FERLNKEYKKRIIMVTHNMD--QVLRIA 218 (289)
T ss_pred HHHHHHhcCCEEEEEecCHH--HHHHhC
Confidence 5544332 567777777543 344444
No 399
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.27 E-value=7.4e-07 Score=90.97 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=85.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH--HHHHHHHHH---HHHh----CCccCCee------
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV--AAVSVARRV---AQEL----GVRLGEEV------ 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~--l~~~~~~~~---~~~~----~~~~~~~~------ 81 (466)
+.+|+.+.|+||+||||||++..+.+...+..|...+...+... ......+.+ .+.. ..++...+
T Consensus 21 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 100 (491)
T PRK10982 21 VRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP 100 (491)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccc
Confidence 56899999999999999999999999876655543332222100 000000000 0000 00000000
Q ss_pred --eeeEeec--------------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 82 --GYAIRFE--------------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 82 --g~~~~~~--------------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
+...... -....+..+.-+|.|+.++..++...+.+++++|+||+- ..+|......+.+.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~ 179 (491)
T PRK10982 101 TKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPT-SSLTEKEVNHLFTIIRK 179 (491)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHH
Confidence 0000000 000112345558999999999999899999999999998 78888887776555555
Q ss_pred hhhcCceEEEEecccC
Q 012322 146 LRASKLKILITSATLD 161 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~ 161 (466)
....+..+|+.|+.++
T Consensus 180 l~~~g~tvii~tH~~~ 195 (491)
T PRK10982 180 LKERGCGIVYISHKME 195 (491)
T ss_pred HHhCCCEEEEEecCHH
Confidence 4433567777777543
No 400
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.27 E-value=1.8e-06 Score=88.67 Aligned_cols=143 Identities=23% Similarity=0.190 Sum_probs=84.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHH-HH---HHHhC----CccCCee------
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVAR-RV---AQELG----VRLGEEV------ 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~-~~---~~~~~----~~~~~~~------ 81 (466)
+.+|+.+.|+||+||||||++..+.+...+..|...+...+.... .....+ .+ .+... ..+...+
T Consensus 28 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 107 (510)
T PRK09700 28 VYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHL 107 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccc
Confidence 568999999999999999999999998766555433322111000 000000 00 00000 0000000
Q ss_pred -----eee-Eee--------------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 82 -----GYA-IRF--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 82 -----g~~-~~~--------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
+.. ... .-....+..+--+|.|+.++..++...+.+++++++||+- ..+|......+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt-~~LD~~~~~~l~~ 186 (510)
T PRK09700 108 TKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPT-SSLTNKEVDYLFL 186 (510)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHH
Confidence 000 000 0000112344558999999999999999999999999998 7888888777666
Q ss_pred HHHHhhhcCceEEEEeccc
Q 012322 142 RLVNLRASKLKILITSATL 160 (466)
Q Consensus 142 ~i~~~~~~~~~ii~~SAT~ 160 (466)
.+.+....+..+|+.|+.+
T Consensus 187 ~l~~l~~~g~tiiivsHd~ 205 (510)
T PRK09700 187 IMNQLRKEGTAIVYISHKL 205 (510)
T ss_pred HHHHHHhCCCEEEEEeCCH
Confidence 5555444356677877754
No 401
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=9.6e-07 Score=81.94 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=49.5
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
...-.|.|+.++..+....+.+++++++||+. ..+|......+.+.+.+... +..+|+.|+.++
T Consensus 146 ~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 209 (253)
T PRK14267 146 YPSNLSGGQRQRLVIARALAMKPKILLMDEPT-ANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA 209 (253)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH
Confidence 34458899999999999899999999999998 78888887776666655543 566777777543
No 402
>PRK13409 putative ATPase RIL; Provisional
Probab=98.27 E-value=2.1e-06 Score=88.80 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=86.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE-----EeCchh-----HHHHHHHHHHHHHhCCccCCeeee-eE
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-----VTQPRR-----VAAVSVARRVAQELGVRLGEEVGY-AI 85 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~-----~~~p~~-----~l~~~~~~~~~~~~~~~~~~~~g~-~~ 85 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+ ++.... ..+.+.........+.. ..... ..
T Consensus 362 i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~--~~~~~~L~ 439 (590)
T PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSS--YYKSEIIK 439 (590)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChH--HHHHHHHH
Confidence 5789999999999999999999999987766554321 111110 01111111100000000 00000 00
Q ss_pred eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-CceEEEEecccC
Q 012322 86 RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 86 ~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.+.-....+..+.-+|.|+.++..++.....+.+++++||+- ..+|......+.+.+.+.... +..+++.|+.+.
T Consensus 440 ~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~ 515 (590)
T PRK13409 440 PLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS-AHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY 515 (590)
T ss_pred HCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 000001123456679999999999999999999999999998 788888877766655554332 566778777543
No 403
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.27 E-value=1.1e-06 Score=93.75 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=88.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-HHHHH--------------HHHHhCCccCCe-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARR--------------VAQELGVRLGEE- 80 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-~~~~~--------------~~~~~~~~~~~~- 80 (466)
+..|+.+.|+|++||||||++..+++...+.+|...+...+.+..-. +..+. +.+.........
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~ 559 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAP 559 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCC
Confidence 56899999999999999999999999888776665444433222111 11111 111110000000
Q ss_pred ----------eeeeEeeccccCc--cc----eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 81 ----------VGYAIRFEDRTSE--RT----LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 81 ----------~g~~~~~~~~~~~--~~----~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
.+.. .+-..... ++ .-.-.+.|+.++..+++..+.+.+++|+||+- ..+|.+....+.+.+.
T Consensus 560 ~~~i~~a~~~~~l~-~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpt-s~LD~~~~~~i~~~l~ 637 (694)
T TIGR01846 560 FEHVIHAAKLAGAH-DFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT-SALDYESEALIMRNMR 637 (694)
T ss_pred HHHHHHHHHHcChH-HHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCC-cCCCHHHHHHHHHHHH
Confidence 0000 00000000 11 11237999999999999999999999999998 7899888777667666
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
+..+ +..+|+.|+-++
T Consensus 638 ~~~~-~~t~i~itH~~~ 653 (694)
T TIGR01846 638 EICR-GRTVIIIAHRLS 653 (694)
T ss_pred HHhC-CCEEEEEeCChH
Confidence 5543 677888888653
No 404
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.27 E-value=1.1e-05 Score=78.20 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=91.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeC------chhHHHHH---HHHHHHHHhCCccCCe--eeee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ------PRRVAAVS---VARRVAQELGVRLGEE--VGYA 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~------p~~~l~~~---~~~~~~~~~~~~~~~~--~g~~ 84 (466)
.+..|++-.+.|.||+||||++..+.+...++.|...+-.. |..+...- +++.+.-.-+.++.++ .|..
T Consensus 26 ~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e 105 (501)
T COG3845 26 SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLE 105 (501)
T ss_pred eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCc
Confidence 46789999999999999999999999999888776555433 33222110 0000000000111110 0100
Q ss_pred E----e----------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 85 I----R----------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 85 ~----~----------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
. . +.-....+..+--+|-|..++.-+-..+..+.+++|+||+. ..+.+.-...++..+.
T Consensus 106 ~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPT-aVLTP~E~~~lf~~l~ 184 (501)
T COG3845 106 PSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPT-AVLTPQEADELFEILR 184 (501)
T ss_pred cccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHH
Confidence 0 0 01112334566668888888877767788899999999987 5666666666666666
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
.....+..+|+.|+-++
T Consensus 185 ~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 185 RLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHCCCEEEEEeccHH
Confidence 66666889999999764
No 405
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.26 E-value=1.1e-05 Score=75.09 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=49.0
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
..+.-+|.|+.++..+....+.+++++++||+. ..+|......+.+.+..... +..+|+.|+.+
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~ 207 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPC-SALDPISTLAIEDLINELKQ-DYTIVIVTHNM 207 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 345568999999999999999999999999998 78888877765555554433 55677766654
No 406
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.26 E-value=5.8e-06 Score=78.68 Aligned_cols=134 Identities=13% Similarity=0.014 Sum_probs=69.6
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHh---cCc-CCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEee-----c
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHR---HGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-----E 88 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~---~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~-----~ 88 (466)
...+..++.-..|+|||..+..++.. ... .....+++++|. .+..++...+.+..........-+.... .
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccc
Confidence 34556777889999999544444432 111 112258888887 6667888888777632111111111111 1
Q ss_pred cccCccceEEEcCHHHHH--------HHHhhCCCCCCCcEEEecCCCcc-ccCHHHHHHHHHHHHHhhhcCceEEEEecc
Q 012322 89 DRTSERTLIKYLTDGVLL--------REILSNPDLSPYSVIILDEAHER-SLNTDILLGLVKRLVNLRASKLKILITSAT 159 (466)
Q Consensus 89 ~~~~~~~~i~~~T~g~l~--------~~~~~~~~l~~~~~iIiDEah~~-~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (466)
.......+++++|.+.+. ..+. -.++++||+||+|.. ...... .+.+.. .. ....+++|||
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~----~~~~~~vIvDEaH~~k~~~s~~----~~~l~~-l~-~~~~~lLSgT 171 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLK----QIKWDRVIVDEAHRLKNKDSKR----YKALRK-LR-ARYRWLLSGT 171 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHH----TSEEEEEEETTGGGGTTTTSHH----HHHHHC-CC-ECEEEEE-SS
T ss_pred ccccccceeeeccccccccccccccccccc----cccceeEEEecccccccccccc----cccccc-cc-cceEEeeccc
Confidence 122356789999998887 1111 135899999999942 122221 222332 22 5667889999
Q ss_pred cCh
Q 012322 160 LDG 162 (466)
Q Consensus 160 ~~~ 162 (466)
+-.
T Consensus 172 P~~ 174 (299)
T PF00176_consen 172 PIQ 174 (299)
T ss_dssp -SS
T ss_pred ccc
Confidence 843
No 407
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.26 E-value=1e-06 Score=79.80 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=48.8
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHH-HHHhh-hcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR-LVNLR-ASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~-i~~~~-~~~~~ii~~SAT~~ 161 (466)
.+.-++.|+.++..+...++.+++++++||+- ..+|......+++. ++... ..+..+|+.|+.++
T Consensus 137 ~~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~ 203 (218)
T cd03290 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPF-SALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ 203 (218)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-cccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence 34568999999999999999999999999998 78888876665552 33332 22567788777654
No 408
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=9.5e-06 Score=75.17 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=49.9
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
...-.|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+... +..+|+.|+.++
T Consensus 144 ~~~~LS~Gq~qr~~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~ 207 (251)
T PRK14251 144 NAQAFSGGQQQRICIARALAVRPKVVLLDEPT-SALDPISSSEIEETLMELKH-QYTFIMVTHNLQ 207 (251)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC-ccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH
Confidence 44558899999999988889999999999998 78888887776666655543 567777777543
No 409
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.25 E-value=4.9e-06 Score=76.87 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=48.9
Q ss_pred cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceEEEEecccC
Q 012322 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SAT~~ 161 (466)
.|.|+.+|.+++.....++++||-||.- ..+|......+++-+.+... .+..+|+.|+.+.
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPT-TALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~ 215 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPT-TALDVTVQAQILDLLKELQREKGTALILITHDLG 215 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCc-chhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999999999999999999999998 67887776665554444433 4788999999775
No 410
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=1.6e-06 Score=81.17 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=51.1
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
.+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+.+... +..+|+.|+.+ +.+..+.
T Consensus 151 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~--~~~~~~~ 220 (269)
T PRK14259 151 SGYSLSGGQQQRLCIARTIAIEPEVILMDEPC-SALDPISTLKIEETMHELKK-NFTIVIVTHNM--QQAVRVS 220 (269)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH--HHHHHhc
Confidence 34558999999999999999999999999998 78888877775555554433 55677766654 3344444
No 411
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.24 E-value=1.6e-06 Score=84.13 Aligned_cols=139 Identities=19% Similarity=0.180 Sum_probs=88.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh------------------HHH-HHHHHHHHHHhCCc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR------------------VAA-VSVARRVAQELGVR 76 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~------------------~l~-~~~~~~~~~~~~~~ 76 (466)
.+..|+.+.|+||+||||||+...+.+...+..|..-+-....+ ++. -.+++.+++.-...
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~ 437 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEA 437 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccC
Confidence 35689999999999999999999999877666554333222110 000 00111111110000
Q ss_pred ------------------cCCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHH
Q 012322 77 ------------------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLG 138 (466)
Q Consensus 77 ------------------~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~ 138 (466)
...--||....... =.-+|.|+.+|..+.+.+..++.++|+||.. .++|.+--.+
T Consensus 438 d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~------G~~LSgGQRQRIaLARAlYG~P~lvVLDEPN-sNLD~~GE~A 510 (580)
T COG4618 438 DPEKVIEAARLAGVHELILRLPQGYDTRIGEG------GATLSGGQRQRIALARALYGDPFLVVLDEPN-SNLDSEGEAA 510 (580)
T ss_pred CHHHHHHHHHHcChHHHHHhCcCCccCccCCC------CCCCCchHHHHHHHHHHHcCCCcEEEecCCC-CCcchhHHHH
Confidence 00001111111000 0127899999999999999999999999998 7888888888
Q ss_pred HHHHHHHhhhcCceEEEEecccC
Q 012322 139 LVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 139 ~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
+.+.+...+.++..+|..++-+.
T Consensus 511 L~~Ai~~~k~rG~~vvviaHRPs 533 (580)
T COG4618 511 LAAAILAAKARGGTVVVIAHRPS 533 (580)
T ss_pred HHHHHHHHHHcCCEEEEEecCHH
Confidence 88888888877888888887654
No 412
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.24 E-value=1.3e-05 Score=69.24 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=92.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH-HHHHHHHHHH---HH----hCCccCCeeeeeEee-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRVA---QE----LGVRLGEEVGYAIRF- 87 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~-l~~~~~~~~~---~~----~~~~~~~~~g~~~~~- 87 (466)
+..|+.+.|.||||+||||++..+.++..+..|...+...|... ...+.++..+ +. |.+.+.+.+..+...
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~ 103 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPH 103 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccc
Confidence 56899999999999999999999999998887776666655432 2233333221 10 111111111110000
Q ss_pred -------ccc-------------cCccceEEEcCHHHHHHHHhhCC------CCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 88 -------EDR-------------TSERTLIKYLTDGVLLREILSNP------DLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 88 -------~~~-------------~~~~~~i~~~T~g~l~~~~~~~~------~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
+.. .-.......+|.|..++.-+++. ...+-+++.+||.- ..+|.......++
T Consensus 104 ~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPt-saLDi~HQ~~tl~ 182 (259)
T COG4559 104 RSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPT-SALDIAHQHHTLR 182 (259)
T ss_pred ccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCc-cccchHHHHHHHH
Confidence 000 00123444577777666543332 23334799999988 6788877777666
Q ss_pred HHHHhhhcCceEEEEecccChhHHHhhcCCCCeEeeCC
Q 012322 142 RLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPG 179 (466)
Q Consensus 142 ~i~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~ 179 (466)
........+.-++++=+.+| +..-+.+..++.-.|
T Consensus 183 laR~la~~g~~V~~VLHDLN---LAA~YaDrivll~~G 217 (259)
T COG4559 183 LARQLAREGGAVLAVLHDLN---LAAQYADRIVLLHQG 217 (259)
T ss_pred HHHHHHhcCCcEEEEEccch---HHHHhhheeeeeeCC
Confidence 66665555667777777776 444444443433333
No 413
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.24 E-value=3.1e-06 Score=78.68 Aligned_cols=143 Identities=15% Similarity=0.087 Sum_probs=82.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHH--------------HHHHhCCccCC-e
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARR--------------VAQELGVRLGE-E 80 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~--------------~~~~~~~~~~~-~ 80 (466)
+..|+.+.|.|++||||||++..+++...+..|...+-..+.... ..+..+. +.......... .
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~ 123 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTD 123 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCH
Confidence 568999999999999999999999998766555433322111100 0000000 00000000000 0
Q ss_pred --eeee---Eeecc---cc------CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 81 --VGYA---IRFED---RT------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 81 --~g~~---~~~~~---~~------~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
+... ..... .. .......-.+.|+.++..+....+.+++++++||+- ..+|......+.+.+...
T Consensus 124 ~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~~ 202 (257)
T cd03288 124 DRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEAT-ASIDMATENILQKVVMTA 202 (257)
T ss_pred HHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHh
Confidence 0000 00000 00 001123357899999999999999999999999998 788888766655545443
Q ss_pred hhcCceEEEEecccC
Q 012322 147 RASKLKILITSATLD 161 (466)
Q Consensus 147 ~~~~~~ii~~SAT~~ 161 (466)
. .+..+|+.|+.++
T Consensus 203 ~-~~~tiii~sh~~~ 216 (257)
T cd03288 203 F-ADRTVVTIAHRVS 216 (257)
T ss_pred c-CCCEEEEEecChH
Confidence 3 3667777777654
No 414
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.24 E-value=1.1e-05 Score=82.60 Aligned_cols=151 Identities=21% Similarity=0.241 Sum_probs=90.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-----HHHH-------HHHH--------HHHHHhCC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-----VAAV-------SVAR--------RVAQELGV 75 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-----~l~~-------~~~~--------~~~~~~~~ 75 (466)
.+..|+.+.|+||+||||||++..+++...+..|...+...+.. .... |... .+.+....
T Consensus 275 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~ 354 (501)
T PRK11288 275 SVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINI 354 (501)
T ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc
Confidence 35789999999999999999999999987665554433222110 0000 0000 01111100
Q ss_pred ccCCe---eee--eE------------eecc-ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHH
Q 012322 76 RLGEE---VGY--AI------------RFED-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILL 137 (466)
Q Consensus 76 ~~~~~---~g~--~~------------~~~~-~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~ 137 (466)
..... .+. .. .+.- ....+..+.-+|.|+.++..+....+.+++++++||+- ..+|.....
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~ 433 (501)
T PRK11288 355 SARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPT-RGIDVGAKH 433 (501)
T ss_pred ccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCC-CCCCHhHHH
Confidence 00000 000 00 0000 01123456678999999999999999999999999998 789998877
Q ss_pred HHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 138 GLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 138 ~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
.+++.+......+..+|+.|+-+ +.+.++.
T Consensus 434 ~l~~~l~~l~~~g~tviivsHd~--~~~~~~~ 463 (501)
T PRK11288 434 EIYNVIYELAAQGVAVLFVSSDL--PEVLGVA 463 (501)
T ss_pred HHHHHHHHHHhCCCEEEEECCCH--HHHHhhC
Confidence 76666555444466788877754 3344443
No 415
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1.7e-06 Score=84.72 Aligned_cols=137 Identities=22% Similarity=0.294 Sum_probs=88.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHH----------------------------
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVAR---------------------------- 67 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~---------------------------- 67 (466)
.+..|+.+.|+|++||||||++..++..... .|...+-.+..+....+-.+
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d~-sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sa 452 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFDY-SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSA 452 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHHhcc-CCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCc
Confidence 3578999999999999999999999998873 44443333332222111111
Q ss_pred ------HHHHHhCCccC---CeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHH
Q 012322 68 ------RVAQELGVRLG---EEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLG 138 (466)
Q Consensus 68 ------~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~ 138 (466)
+.++..+.... ..-||.. .-..+=...+.|+.++..+.+..+.+..++++|||. ..+|.+.-.+
T Consensus 453 s~eeV~e~~k~a~~hd~i~~l~~GY~T------~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaT-S~LD~~TE~~ 525 (591)
T KOG0057|consen 453 SDEEVVEACKRAGLHDVISRLPDGYQT------LVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEAT-SALDSETERE 525 (591)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccchh------hHhhcccccccchHHHHHHHHHHhcCCCeEEecCcc-cccchhhHHH
Confidence 01111111000 0001110 011223447899999999999999999999999999 7899998888
Q ss_pred HHHHHHHhhhcCceEEEEecccC
Q 012322 139 LVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 139 ~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
+++.+..... +..+|+.-+-++
T Consensus 526 i~~~i~~~~~-~rTvI~IvH~l~ 547 (591)
T KOG0057|consen 526 ILDMIMDVMS-GRTVIMIVHRLD 547 (591)
T ss_pred HHHHHHHhcC-CCeEEEEEecch
Confidence 8888887554 666776666554
No 416
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.23 E-value=7.2e-06 Score=75.83 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=48.0
Q ss_pred EcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 99 ~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
-++.|+.++..+....+.+++++++||+- ..+|......+.+.+......+..+|+.|+.+.
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt-~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESD-SGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 48999999999999999999999999998 788888877755555444433567777777543
No 417
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.23 E-value=4.1e-06 Score=73.57 Aligned_cols=151 Identities=19% Similarity=0.296 Sum_probs=89.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe-CchhHHHHHHHHHHHHHhC-------CccC---------
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARRVAQELG-------VRLG--------- 78 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~-~p~~~l~~~~~~~~~~~~~-------~~~~--------- 78 (466)
.|..|+.+.|+||+||||||++..+......+.|...+.. .+......+. +++....| .-..
T Consensus 26 ~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l-r~~r~~iGmIfQ~~nLv~r~sv~~NVl~ 104 (258)
T COG3638 26 EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL-RKLRRDIGMIFQQFNLVPRLSVLENVLL 104 (258)
T ss_pred EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH-HHHHHhceeEeccCCcccccHHHHHHHh
Confidence 4678999999999999999999999997777666443332 2222222211 11111111 1000
Q ss_pred CeeeeeEeecc---ccC-------------------ccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHH
Q 012322 79 EEVGYAIRFED---RTS-------------------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDIL 136 (466)
Q Consensus 79 ~~~g~~~~~~~---~~~-------------------~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~ 136 (466)
...|+...+.. ..+ ...+.--+|+|+.+|..+++.+.+++++|.-||+- .++|+..-
T Consensus 105 grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv-asLDp~~a 183 (258)
T COG3638 105 GRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV-ASLDPESA 183 (258)
T ss_pred hhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcc-cccChhhH
Confidence 00111110000 000 01223348999999999999999999999999987 67887776
Q ss_pred HHHHHHHHHhhh-cCceEEEEecccChhHHHhhcC
Q 012322 137 LGLVKRLVNLRA-SKLKILITSATLDGEKVSKFFS 170 (466)
Q Consensus 137 ~~~l~~i~~~~~-~~~~ii~~SAT~~~~~~~~~~~ 170 (466)
..++..+..... .+..+|+-.++++ ...+|+.
T Consensus 184 ~~Vm~~l~~in~~~g~Tvi~nLH~vd--lA~~Y~~ 216 (258)
T COG3638 184 KKVMDILKDINQEDGITVIVNLHQVD--LAKKYAD 216 (258)
T ss_pred HHHHHHHHHHHHHcCCEEEEEechHH--HHHHHHh
Confidence 655555544433 2567777777765 3345553
No 418
>PLN03232 ABC transporter C family member; Provisional
Probab=98.23 E-value=3.1e-06 Score=96.93 Aligned_cols=144 Identities=19% Similarity=0.188 Sum_probs=89.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHHHHHHH---HH---h------CCccCCeee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QE---L------GVRLGEEVG 82 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~~~~~~---~~---~------~~~~~~~~g 82 (466)
.+..|+.+.|+|+|||||||++..++....+.+|...+-..+.+..- .+..++++ +. + ++..+....
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~s 1337 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHN 1337 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCC
Confidence 35689999999999999999999999988887777666555543322 22222211 00 0 000000000
Q ss_pred ee--------Eeec---cccCc--cceE----EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 83 YA--------IRFE---DRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 83 ~~--------~~~~---~~~~~--~~~i----~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
.. .... ..... ++.+ .-.|.|+.++..+++..+++.+++|+|||- ..+|.+.-..+.+.+.+
T Consensus 1338 deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEAT-SaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232 1338 DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEAT-ASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHH
Confidence 00 0000 00000 1111 127899999999999999999999999998 78888776665455554
Q ss_pred hhhcCceEEEEecccC
Q 012322 146 LRASKLKILITSATLD 161 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~~ 161 (466)
..+ +..+|..++-++
T Consensus 1417 ~~~-~~TvI~IAHRl~ 1431 (1495)
T PLN03232 1417 EFK-SCTMLVIAHRLN 1431 (1495)
T ss_pred HcC-CCEEEEEeCCHH
Confidence 444 778888888763
No 419
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.23 E-value=2e-06 Score=88.28 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=88.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch-h-HHHHHHHHH------------------HHHHhCCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-R-VAAVSVARR------------------VAQELGVR 76 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~-~-~l~~~~~~~------------------~~~~~~~~ 76 (466)
+..|+.+.|.||+||||||++..+.+...+..|...+...+. . .......+. +.+.....
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAIS 365 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccc
Confidence 568999999999999999999999998766555443322211 0 000000000 00110000
Q ss_pred cCC----e---eee-eEe------------eccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHH
Q 012322 77 LGE----E---VGY-AIR------------FEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI 135 (466)
Q Consensus 77 ~~~----~---~g~-~~~------------~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~ 135 (466)
... . .+. ... +.-. ...+..+--+|.|+.++..++...+.+++++|+||+- ..+|...
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt-~~LD~~~ 444 (510)
T PRK09700 366 RSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT-RGIDVGA 444 (510)
T ss_pred cccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCC-CCcCHHH
Confidence 000 0 000 000 0000 1123445668999999999999889999999999998 7888888
Q ss_pred HHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 136 LLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 136 ~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
...+++.+......+..+|+.|+.++ .+..+.
T Consensus 445 ~~~l~~~l~~l~~~g~tvi~vsHd~~--~~~~~~ 476 (510)
T PRK09700 445 KAEIYKVMRQLADDGKVILMVSSELP--EIITVC 476 (510)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCHH--HHHhhC
Confidence 77766655554444667888777543 344443
No 420
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.23 E-value=2.4e-05 Score=77.47 Aligned_cols=126 Identities=23% Similarity=0.308 Sum_probs=74.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC-cCCCcEEE-E-eCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIG-V-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~-~~~~~~i~-~-~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (466)
.+++++++||||+||||.+..++.... ..++.++. + ..|.+..+.++...+++..+..+.
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~----------------- 282 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE----------------- 282 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-----------------
Confidence 467899999999999987777666544 23333333 3 345566666666666665553221
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH-hhhcCceEEEEecccChhHHHh
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN-LRASKLKILITSATLDGEKVSK 167 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~-~~~~~~~ii~~SAT~~~~~~~~ 167 (466)
...++..+...+.. +.++++|+||.+.....+...... +..++. .......++++|||.....+.+
T Consensus 283 --~~~~~~~l~~~l~~---~~~~DlVlIDt~G~~~~d~~~~~~-L~~ll~~~~~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 283 --VVYDPKELAKALEQ---LRDCDVILIDTAGRSQRDKRLIEE-LKALIEFSGEPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred --ccCCHHhHHHHHHH---hCCCCEEEEeCCCCCCCCHHHHHH-HHHHHhccCCCCeEEEEEECCCCHHHHHH
Confidence 11234444444432 346899999999733334443333 555555 2222456888999987665544
No 421
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.1e-05 Score=74.50 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=50.0
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
...-++.|+.++..+....+.+++++++||+- ..+|......+.+.+.+... +..+++.|+.++
T Consensus 139 ~~~~LS~G~~qrv~laral~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 202 (246)
T PRK14269 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPT-SALDPISSGVIEELLKELSH-NLSMIMVTHNMQ 202 (246)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH
Confidence 34558999999999999999999999999998 78888887776665555443 667777777543
No 422
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.22 E-value=2e-06 Score=79.44 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=48.1
Q ss_pred eEEEcCHHHHHHHHhhCCCCC-------CCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLS-------PYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~-------~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.+.-++.|+.++..+....+. +.+++++||+- ..+|......+.+.+......+..+|+.|+.++
T Consensus 123 ~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt-~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~ 194 (248)
T PRK03695 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPM-NSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN 194 (248)
T ss_pred CcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 455589999999888877665 67999999998 788888777655555444433567888777654
No 423
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.4e-06 Score=81.17 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=51.2
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
...-+|.|+.++..+....+.+++++++||+- ..+|......+++.+.+... +..+|+.|+.+ +.+..+.
T Consensus 153 ~~~~LS~Gq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~--~~~~~~~ 222 (260)
T PRK10744 153 SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPC-SALDPISTGRIEELITELKQ-DYTVVIVTHNM--QQAARCS 222 (260)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH--HHHHHhC
Confidence 34458999999999999999999999999998 78888877766555555443 55677766654 3344444
No 424
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.2e-06 Score=81.27 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=50.5
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
....-++.|+.++..+....+.+++++|+||+- ..+|......+++.+.+... +..+|+.|+.++
T Consensus 146 ~~~~~LSgG~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~ 210 (254)
T PRK14273 146 TNALSLSGGQQQRLCIARTLAIEPNVILMDEPT-SALDPISTGKIEELIINLKE-SYTIIIVTHNMQ 210 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 345568999999999999999999999999998 78888887776665555543 566777777553
No 425
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=4.1e-06 Score=77.57 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=51.7
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
.+.-.|.|+.++..+....+.+.+++++||+. ..+|......+.+.+.+... +..+++.|+-+ +.+..+.
T Consensus 143 ~~~~LS~Gq~qr~~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~--~~~~~~~ 212 (250)
T PRK14262 143 PGTRLSGGQQQRLCIARALAVEPEVILLDEPT-SALDPIATQRIEKLLEELSE-NYTIVIVTHNI--GQAIRIA 212 (250)
T ss_pred ChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc-cccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH--HHHHHhC
Confidence 44558999999999999999999999999998 78888887776565555443 55677766644 3344444
No 426
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.22 E-value=8.3e-06 Score=70.57 Aligned_cols=154 Identities=23% Similarity=0.306 Sum_probs=94.9
Q ss_pred CchHhHHHHHHH----HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc-hhHHHHHHHHHHHHHhCCcc--
Q 012322 5 PILQYEETIVET----VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-RRVAAVSVARRVAQELGVRL-- 77 (466)
Q Consensus 5 pi~~~q~~i~~~----i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p-~~~l~~~~~~~~~~~~~~~~-- 77 (466)
|..+.++.++.. +.+|+.+.|.|.+|+||||++..+.+...++.|...+-... ++....+.+..+++-+.-..
T Consensus 13 ~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~g 92 (263)
T COG1101 13 KGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAG 92 (263)
T ss_pred CCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhC
Confidence 344455556653 57899999999999999999999999998887765443322 23333333333332221110
Q ss_pred -----------------CCeeeeeEeecc-----------------ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEe
Q 012322 78 -----------------GEEVGYAIRFED-----------------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIIL 123 (466)
Q Consensus 78 -----------------~~~~g~~~~~~~-----------------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIi 123 (466)
+..-|+...... ...-..++-..|.|+.+...+....+..++++.+
T Consensus 93 t~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLL 172 (263)
T COG1101 93 TAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLL 172 (263)
T ss_pred CcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEe
Confidence 111111110000 0012467778999999888877778999999999
Q ss_pred cCCCccccCHHH---HHHHHHHHHHhhhcCceEEEEecccC
Q 012322 124 DEAHERSLNTDI---LLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 124 DEah~~~~~~~~---~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
|| |.-.+|+.. ....-.++++.. +...+++|+.+.
T Consensus 173 DE-HTAALDPkta~~vm~lT~kiV~~~--klTtlMVTHnm~ 210 (263)
T COG1101 173 DE-HTAALDPKTAEFVMELTAKIVEEH--KLTTLMVTHNME 210 (263)
T ss_pred cc-hhhcCCcchHHHHHHHHHHHHHhc--CCceEEEeccHH
Confidence 99 545566554 444445555544 677888888763
No 427
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.21 E-value=5.4e-06 Score=83.60 Aligned_cols=138 Identities=18% Similarity=0.227 Sum_probs=88.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc-------EEEEeC-----chhHHHHHHHH----------HHHHHh
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-------IIGVTQ-----PRRVAAVSVAR----------RVAQEL 73 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~-------~i~~~~-----p~~~l~~~~~~----------~~~~~~ 73 (466)
.+..|+.++|.||+|+|||+++..+.+.-++..|. .+++++ |...+.++++- .+.+.+
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL 494 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVL 494 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHH
Confidence 35689999999999999999999999877664443 233332 11112111100 000000
Q ss_pred -CCccCCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCce
Q 012322 74 -GVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (466)
Q Consensus 74 -~~~~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (466)
....+...+ +.+.. . +. =.++|+|..++...++..+++++++|+|||- ..+|.+....++..+....+ +..
T Consensus 495 ~~vgL~~L~~---rl~~~-~-~W-~~vLS~GEqQRlafARilL~kP~~v~LDEAT-sALDe~~e~~l~q~l~~~lp-~~t 566 (604)
T COG4178 495 HKVGLGDLAE---RLDEE-D-RW-DRVLSGGEQQRLAFARLLLHKPKWVFLDEAT-SALDEETEDRLYQLLKEELP-DAT 566 (604)
T ss_pred HHcCcHHHHH---HHhcc-C-cH-hhhcChhHHHHHHHHHHHHcCCCEEEEecch-hccChHHHHHHHHHHHhhCC-CCE
Confidence 000000000 00000 0 01 1247999999999999999999999999998 78898888887777777776 888
Q ss_pred EEEEecccC
Q 012322 153 ILITSATLD 161 (466)
Q Consensus 153 ii~~SAT~~ 161 (466)
+|-+++...
T Consensus 567 vISV~Hr~t 575 (604)
T COG4178 567 VISVGHRPT 575 (604)
T ss_pred EEEeccchh
Confidence 888887655
No 428
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.1e-06 Score=89.87 Aligned_cols=145 Identities=25% Similarity=0.255 Sum_probs=85.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHH-HHH---HHHh----CCccCCeeee---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVA-RRV---AQEL----GVRLGEEVGY--- 83 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~-~~~---~~~~----~~~~~~~~g~--- 83 (466)
.+.+|+.+.|+||+||||||++..+.+...+..|...+...+.... ..+.. +.+ .+.. +..+...+.+
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 105 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQL 105 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhccc
Confidence 3568999999999999999999999998766555433322111000 00000 000 0000 0000000000
Q ss_pred ----e-Ee--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 84 ----A-IR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 84 ----~-~~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
. .. +.-....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~ 184 (501)
T PRK11288 106 PHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPT-SSLSAREIEQLFRVIR 184 (501)
T ss_pred ccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCHHHHHHHHHHHH
Confidence 0 00 00000112334558999999999999999999999999998 7888887777666555
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
+....+..+|+.|+.++
T Consensus 185 ~~~~~g~tiiiitHd~~ 201 (501)
T PRK11288 185 ELRAEGRVILYVSHRME 201 (501)
T ss_pred HHHhCCCEEEEEeCCHH
Confidence 54433567788777543
No 429
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.2e-06 Score=81.35 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=48.7
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+..... +..+|+.|+.++
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~ 209 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPA-SALDPIATQKIEELIHELKA-RYTIIIVTHNMQ 209 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH
Confidence 4458999999999998899999999999998 78888887776565555433 566777777543
No 430
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.4e-05 Score=75.40 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=52.3
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
..+.-+|.|+.++..+....+.+.+++|+||+- ..+|......+++.+..... +..+|+.|+-+ +.+.++.
T Consensus 178 ~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt-~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~--~~~~~~~ 248 (286)
T PRK14275 178 KNALGLSGGQQQRLCVARTLAVEPEILLLDEPT-SALDPKATAKIEDLIQELRG-SYTIMIVTHNM--QQASRVS 248 (286)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH--HHHHHhC
Confidence 345568999999999999999999999999998 78998887776665555443 45666666643 3444444
No 431
>PRK13409 putative ATPase RIL; Provisional
Probab=98.21 E-value=1.1e-05 Score=83.58 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=86.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH------HHHHHHHHHh--CCccCC--------
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV------SVARRVAQEL--GVRLGE-------- 79 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~------~~~~~~~~~~--~~~~~~-------- 79 (466)
.+.+|+.+.++||+|+||||++..+.+...++.|.... .|...... ++.....+.. ...+..
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~--~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~ 172 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEE--EPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLI 172 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccC--CCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhh
Confidence 57889999999999999999999999987776554321 11111000 0000000000 000000
Q ss_pred ------eeeeeEe--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHH
Q 012322 80 ------EVGYAIR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL 139 (466)
Q Consensus 80 ------~~g~~~~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~ 139 (466)
++..... .+-....+..+.-+|.|+.++..+....+.+.+++++||+- ..+|......+
T Consensus 173 p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPt-s~LD~~~~~~l 251 (590)
T PRK13409 173 PKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPT-SYLDIRQRLNV 251 (590)
T ss_pred hhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHH
Confidence 0000000 00000123455668999999999999899999999999988 67888877766
Q ss_pred HHHHHHhhhcCceEEEEecccC
Q 012322 140 VKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 140 l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.+.+.+... +..+|+.|+.++
T Consensus 252 ~~~i~~l~~-g~tvIivsHd~~ 272 (590)
T PRK13409 252 ARLIRELAE-GKYVLVVEHDLA 272 (590)
T ss_pred HHHHHHHHC-CCEEEEEeCCHH
Confidence 555555444 667888888654
No 432
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.21 E-value=1.1e-05 Score=82.61 Aligned_cols=151 Identities=12% Similarity=0.170 Sum_probs=88.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch-----hHH-------HHH------------HHHHHHH
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-----RVA-------AVS------------VARRVAQ 71 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~-----~~l-------~~~------------~~~~~~~ 71 (466)
.+.+|+.+.|.||+||||||++..+.+...+..|...+...+. ... +.| +.+.+..
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~ 364 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCA 364 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHh
Confidence 4578999999999999999999999987765554432221110 000 000 0011000
Q ss_pred H----hCCccCCe-----eee-eEeeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHH
Q 012322 72 E----LGVRLGEE-----VGY-AIRFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV 140 (466)
Q Consensus 72 ~----~~~~~~~~-----~g~-~~~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l 140 (466)
. ........ +.. ...+.-. ...+..+.-+|.|+.++..+....+.+++++|+||+- ..+|......+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt-~gLD~~~~~~l~ 443 (510)
T PRK15439 365 LTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPT-RGVDVSARNDIY 443 (510)
T ss_pred hhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCC-cCcChhHHHHHH
Confidence 0 00000000 000 0000000 1123445668999999999998889999999999998 788888877766
Q ss_pred HHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 141 KRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 141 ~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
+.+.+....+..+|+.|+.++ .+.++.
T Consensus 444 ~~l~~l~~~g~tiIivsHd~~--~i~~~~ 470 (510)
T PRK15439 444 QLIRSIAAQNVAVLFISSDLE--EIEQMA 470 (510)
T ss_pred HHHHHHHhCCCEEEEECCCHH--HHHHhC
Confidence 665554444567888777543 344443
No 433
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.21 E-value=2.3e-06 Score=97.27 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=49.8
Q ss_pred cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh-hcCceEEEEecccC
Q 012322 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATLD 161 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~-~~~~~ii~~SAT~~ 161 (466)
+|.|+.+|..+++..+.+++++|+||+- ..+|.+....+.+.+.... .++..+|+.++-+.
T Consensus 1359 LSGGQkQRIaIARALlr~p~ILLLDEaT-SaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls 1420 (1466)
T PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEAT-SSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA 1420 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcc-cccCHHHHHHHHHHHHHHhccCCCEEEEEechHH
Confidence 7899999999999999999999999998 7889888777666665553 23677888888763
No 434
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=1.4e-06 Score=80.94 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=49.6
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+... +..+|+.|+.+
T Consensus 150 ~~~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~ 213 (258)
T PRK14268 150 SPALSLSGGQQQRLCIARTLAVKPKIILFDEPT-SALDPISTARIEDLIMNLKK-DYTIVIVTHNM 213 (258)
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHhh-CCEEEEEECCH
Confidence 345568999999999999999999999999998 78888887776555555433 56777777754
No 435
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=1.9e-05 Score=76.03 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=50.8
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceEEEEecccC
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SAT~~ 161 (466)
..-+|.|+.++..++...+.+++++|+||+- ..+|......+++.+.+... .+..+|+.|+.+.
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPt-s~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~ 220 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPT-NAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ 220 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 3458999999999999999999999999998 78898887776665555443 2678888888653
No 436
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.19 E-value=2e-05 Score=81.81 Aligned_cols=112 Identities=21% Similarity=0.182 Sum_probs=68.9
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccC
Q 012322 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (466)
Q Consensus 211 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip 290 (466)
..+.++||-..+.+..+.+.+.|.+. ++.-..+.+.-...+-..+.+.-+.| -|-+|||.|++|-||-
T Consensus 427 ~~gqPvLvgT~sie~SE~ls~~L~~~----------~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIk 494 (822)
T COG0653 427 EKGQPVLVGTVSIEKSELLSKLLRKA----------GIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIK 494 (822)
T ss_pred hcCCCEEEcCcceecchhHHHHHHhc----------CCCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccc
Confidence 34679999999999999999999865 44334455554455555555444433 5779999999999984
Q ss_pred CeEE---EEeCCcccceeecCCCCccccceee-ecHHHHHHhccccCCC-CCCeEEEecC
Q 012322 291 GVVY---VIDCGYVKQRQYNPSSGMYSLDVVQ-ISKVQANQRVGRAGRT-RPGKCYRLYP 345 (466)
Q Consensus 291 ~v~~---VI~~g~~~~~~~~~~~~~~~~~~~~-~s~~~~~Qr~GRaGR~-~~G~~~~l~~ 345 (466)
--.. |... .|.+.+.+.. .|..-=-|-.||+||. -||..-.+.+
T Consensus 495 Lg~~~~~V~~l-----------GGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 495 LGGNPEFVMEL-----------GGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred cCCCHHHHHHh-----------CCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhh
Confidence 2211 2211 1222222221 2222223899999999 5776544443
No 437
>PRK14974 cell division protein FtsY; Provisional
Probab=98.19 E-value=2.5e-05 Score=74.51 Aligned_cols=124 Identities=18% Similarity=0.293 Sum_probs=72.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE-EeC-chhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceEE
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-VTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~-~~~-p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (466)
..++++|++|+||||.+..++...... +.++. +.. +.|..+.++.+..+..++..+.. + . ..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~-~g----- 204 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------K-YG----- 204 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------c-CC-----
Confidence 478899999999998777776655433 33443 333 35666666666666766654321 0 0 00
Q ss_pred EcCHHHHHHHHhhCCCCCCCcEEEecCCCcccc-CHHHHHHHHHHHHHhhhcCceEEEEecccChh
Q 012322 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSL-NTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (466)
Q Consensus 99 ~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~-~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~ 163 (466)
..|..............+.++|+||+++ +.. +...+.. ++.+.+...++..++.++||...+
T Consensus 205 -~dp~~v~~~ai~~~~~~~~DvVLIDTaG-r~~~~~~lm~e-L~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 205 -ADPAAVAYDAIEHAKARGIDVVLIDTAG-RMHTDANLMDE-LKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCC-ccCCcHHHHHH-HHHHHHhhCCceEEEeeccccchh
Confidence 0111111111111122467899999999 444 4444444 677766555577889999987543
No 438
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.1e-06 Score=74.04 Aligned_cols=53 Identities=23% Similarity=0.294 Sum_probs=41.7
Q ss_pred CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhcC
Q 012322 114 DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS 170 (466)
Q Consensus 114 ~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~~ 170 (466)
.+.++++.|+||.+ ..+|.+.+..+-+.+...+.++.-+++.|+. ..+.+|..
T Consensus 159 ~~lePkl~ILDE~D-SGLDIdalk~V~~~i~~lr~~~~~~liITHy---~rll~~i~ 211 (251)
T COG0396 159 LLLEPKLAILDEPD-SGLDIDALKIVAEGINALREEGRGVLIITHY---QRLLDYIK 211 (251)
T ss_pred HhcCCCEEEecCCC-cCccHHHHHHHHHHHHHHhcCCCeEEEEecH---HHHHhhcC
Confidence 46688999999999 8999999888777777777778888888874 33555553
No 439
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=1.7e-06 Score=80.27 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=49.7
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
..+.-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+.+... +..+|+.|+.++
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 208 (252)
T PRK14272 144 TPATGLSGGQQQRLCIARALAVEPEILLMDEPT-SALDPASTARIEDLMTDLKK-VTTIIIVTHNMH 208 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 345668999999999999999999999999998 78888877765555544433 566777777543
No 440
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.19 E-value=4e-06 Score=84.71 Aligned_cols=140 Identities=21% Similarity=0.256 Sum_probs=86.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc--------EEEEeCchhHHH--HHHHHHHHHHhCCcc-CCeeeee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG--------IIGVTQPRRVAA--VSVARRVAQELGVRL-GEEVGYA 84 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~--------~i~~~~p~~~l~--~~~~~~~~~~~~~~~-~~~~g~~ 84 (466)
.+..|+.+.|+||+|+||||++..++.......|. ..++-|....+- ..+...+.+...... ...-++.
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L 423 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL 423 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH
Confidence 35688999999999999999999998876554332 122333321111 112222222221100 0000000
Q ss_pred Eeec-cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecc
Q 012322 85 IRFE-DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (466)
Q Consensus 85 ~~~~-~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (466)
.++. ........+..+|.|...|+.++...+.+..++|+||+- ..+|.+....+ ...+... .-.+|++|+.
T Consensus 424 ~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT-NhLDi~s~~aL-e~aL~~f--~Gtvl~VSHD 495 (530)
T COG0488 424 GRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT-NHLDIESLEAL-EEALLDF--EGTVLLVSHD 495 (530)
T ss_pred HHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC-ccCCHHHHHHH-HHHHHhC--CCeEEEEeCC
Confidence 0010 011124567789999999999998899999999999998 78999988874 4444444 4578888884
No 441
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=1.7e-06 Score=81.04 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=51.9
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
...-++.|+.++..+....+.+++++|+||+- ..+|......+.+.+..... +..+|+.|+.+ +.+.++.
T Consensus 158 ~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~--~~~~~~~ 227 (274)
T PRK14265 158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPC-SALDPISTRQVEELCLELKE-QYTIIMVTHNM--QQASRVA 227 (274)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH--HHHHHhC
Confidence 34558999999999999999999999999998 78888887776666655543 55667766644 3444444
No 442
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=2.2e-06 Score=92.11 Aligned_cols=142 Identities=18% Similarity=0.234 Sum_probs=92.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHH-H---HHH---hCCccCCeeeeeEee-
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-V---AQE---LGVRLGEEVGYAIRF- 87 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~-~---~~~---~~~~~~~~~g~~~~~- 87 (466)
.+..|+.+.++||+||||||++..+.....+..|...+-..+.+.+..+..+. + .++ ++..+.+++.+....
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~da 454 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDA 454 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcc
Confidence 36789999999999999999999999999888887777666655544333221 1 111 111111111111100
Q ss_pred -------------------------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHH
Q 012322 88 -------------------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (466)
Q Consensus 88 -------------------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~ 142 (466)
+... .+... -++.|+.+|..+++..+.+++++++|||- ..+|......+-+.
T Consensus 455 t~~~i~~a~k~ana~~fi~~lp~g~~T~v-ge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaT-SaLD~~se~~Vq~A 531 (1228)
T KOG0055|consen 455 TREEIEEAAKAANAHDFILKLPDGYDTLV-GERGV-QLSGGQKQRIAIARALVRNPKILLLDEAT-SALDAESERVVQEA 531 (1228)
T ss_pred cHHHHHHHHHHccHHHHHHhhHHhhcccc-cCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcc-cccCHHHHHHHHHH
Confidence 0000 00111 18999999999999999999999999998 77888775554333
Q ss_pred HHHhhhcCceEEEEecccC
Q 012322 143 LVNLRASKLKILITSATLD 161 (466)
Q Consensus 143 i~~~~~~~~~ii~~SAT~~ 161 (466)
+ .....+...|.+++-+.
T Consensus 532 L-d~~~~grTTivVaHRLS 549 (1228)
T KOG0055|consen 532 L-DKASKGRTTIVVAHRLS 549 (1228)
T ss_pred H-HHhhcCCeEEEEeeehh
Confidence 3 33334678888888764
No 443
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.18 E-value=1.6e-06 Score=88.90 Aligned_cols=65 Identities=22% Similarity=0.167 Sum_probs=50.2
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
..+.-+|.|+.++..++...+.+++++++||+- ..+|......+++.+.+....+..+|+.|+.+
T Consensus 139 ~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~ 203 (506)
T PRK13549 139 TPVGNLGLGQQQLVEIAKALNKQARLLILDEPT-ASLTESETAVLLDIIRDLKAHGIACIYISHKL 203 (506)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 345568999999999999999999999999988 78888877776665555443356677777754
No 444
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.18 E-value=1.3e-05 Score=81.17 Aligned_cols=114 Identities=24% Similarity=0.305 Sum_probs=84.6
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCc-c-eEEEEecccccccccC
Q 012322 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNC-R-RFIVSTNIAETSLTVD 290 (466)
Q Consensus 213 ~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~-~-~ilvaT~~~~~Gidip 290 (466)
+.++|+|-.=-....-+...|.. .++...-+-|...-++|..+++.|-..+ + -.|++|-+.+-|||+-
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~----------l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt 846 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDT----------LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLT 846 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHh----------cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceeccc
Confidence 46888885433333333333333 3788888999999999999999997543 3 4578999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchhh
Q 012322 291 GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (466)
Q Consensus 291 ~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (466)
..++||-++. .||| ..--++.-|+-|.|-.+|=.+|+|+++...+.
T Consensus 847 ~An~VIihD~----dFNP-----------~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 847 CANTVIIHDI----DFNP-----------YDDKQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred ccceEEEeec----CCCC-----------cccchhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 9999987554 2333 23336778888999999999999999987655
No 445
>PLN03130 ABC transporter C family member; Provisional
Probab=98.18 E-value=2.1e-06 Score=98.45 Aligned_cols=142 Identities=18% Similarity=0.174 Sum_probs=89.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHHHHHH--------------HHHhCCccCCe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRV--------------AQELGVRLGEE 80 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~~~~~--------------~~~~~~~~~~~ 80 (466)
.+..|+.+.|+|+|||||||++..++....+.+|...+-..+.+..- .+..+++ ++.. ..+..
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNL--d~~~~ 1338 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL--DPFNE 1338 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHh--CcCCC
Confidence 46789999999999999999999999988887776555554433221 1111111 1110 00000
Q ss_pred eeee--------Eeec---cccCc--cceE----EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 81 VGYA--------IRFE---DRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 81 ~g~~--------~~~~---~~~~~--~~~i----~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
.... .... ..... ++.+ .-.|.|+.++..+++..+++.+++|+|||- ..+|.+.-..+.+.+
T Consensus 1339 ~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEAT-SaLD~~Te~~Iq~~I 1417 (1622)
T PLN03130 1339 HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEAT-AAVDVRTDALIQKTI 1417 (1622)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCC-CCCCHHHHHHHHHHH
Confidence 0000 0000 00000 1111 237899999999999999999999999998 778887766655555
Q ss_pred HHhhhcCceEEEEecccC
Q 012322 144 VNLRASKLKILITSATLD 161 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~~ 161 (466)
.+..+ +..+|..++-++
T Consensus 1418 ~~~~~-~~TvI~IAHRL~ 1434 (1622)
T PLN03130 1418 REEFK-SCTMLIIAHRLN 1434 (1622)
T ss_pred HHHCC-CCEEEEEeCChH
Confidence 55544 778888888764
No 446
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.18 E-value=1.5e-05 Score=81.71 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=54.3
Q ss_pred cceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 94 ~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
+..+.-+|.|+.++..++...+.+.+++++||+- ..+|......+.+.+......+..+|+.|+.+ +.+..+.
T Consensus 390 ~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~--~~~~~~~ 462 (501)
T PRK10762 390 EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPT-RGVDVGAKKEIYQLINQFKAEGLSIILVSSEM--PEVLGMS 462 (501)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC-CCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH--HHHHhhC
Confidence 3445568999999999999999999999999998 78888887776666555544456777777754 3344443
No 447
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.18 E-value=2e-05 Score=73.30 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=52.4
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
....-++.|+.++..+....+.+.+++++||+- ..+|......+.+.+..... ...+|+.|+.+ +.+.++.
T Consensus 146 ~~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~--~~i~~~~ 216 (259)
T PRK14260 146 KSALGLSGGQQQRLCIARALAIKPKVLLMDEPC-SALDPIATMKVEELIHSLRS-ELTIAIVTHNM--QQATRVS 216 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH--HHHHHhc
Confidence 345568999999999999899999999999998 78888877776666655543 55667766644 3444444
No 448
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.17 E-value=4.7e-06 Score=78.01 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=50.0
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
...-.+.|+.++..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+.++
T Consensus 164 ~~~~LSgGe~qrv~laraL~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~ 227 (271)
T PRK14238 164 NAYGLSGGQQQRLCIARCLAIEPDVILMDEPT-SALDPISTLKVEELVQELKK-DYSIIIVTHNMQ 227 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH
Confidence 45568999999999999899999999999998 78998887776665555443 567777777543
No 449
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=2.6e-06 Score=78.88 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=51.6
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
...-++.|+.++..+....+.+.+++++||+- ..+|......+.+.+.+... +..+|+.|+.+ +.+.++.
T Consensus 144 ~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~--~~~~~~~ 213 (251)
T PRK14270 144 SALKLSGGQQQRLCIARTIAVKPDVILMDEPT-SALDPISTLKIEDLMVELKK-EYTIVIVTHNM--QQASRVS 213 (251)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH--HHHHHhc
Confidence 44568999999999888888999999999998 78888887776665555443 45677766644 3444444
No 450
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.17 E-value=2.7e-06 Score=97.54 Aligned_cols=143 Identities=15% Similarity=0.120 Sum_probs=87.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-HHHHH--------------HHHhCCccCCe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARRV--------------AQELGVRLGEE 80 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-~~~~~--------------~~~~~~~~~~~ 80 (466)
.+..|+.+.|+|+|||||||++..++....+.+|...+-..+.+....+ +.+++ ++.... .+..
T Consensus 1308 ~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp-~~~~ 1386 (1522)
T TIGR00957 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDP-FSQY 1386 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCc-ccCC
Confidence 3568999999999999999999999998887777655555443322211 11111 111100 0000
Q ss_pred -----------eeeeEeeccc-cCccceE----EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 81 -----------VGYAIRFEDR-TSERTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 81 -----------~g~~~~~~~~-~~~~~~i----~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
++........ ..-++.+ .-.+.|+.++..+++..+++.+++|+|||- ..+|.+.-..+.+.+.
T Consensus 1387 sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaT-SalD~~Te~~Iq~~l~ 1465 (1522)
T TIGR00957 1387 SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEAT-AAVDLETDNLIQSTIR 1465 (1522)
T ss_pred CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHH
Confidence 0000000000 0001122 237899999999999999999999999998 6788876655445554
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
+..+ +..+|..++-++
T Consensus 1466 ~~~~-~~TvI~IAHRl~ 1481 (1522)
T TIGR00957 1466 TQFE-DCTVLTIAHRLN 1481 (1522)
T ss_pred HHcC-CCEEEEEecCHH
Confidence 4444 778888887653
No 451
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.17 E-value=1.6e-05 Score=81.52 Aligned_cols=72 Identities=24% Similarity=0.299 Sum_probs=53.2
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+......+..+|+.|+.+ +.+.++.
T Consensus 399 ~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~--~~~~~~~ 470 (500)
T TIGR02633 399 LPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT-RGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL--AEVLGLS 470 (500)
T ss_pred CccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC-CCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH--HHHHHhC
Confidence 445678999999999999889999999999998 78888877765555544444456677777754 3444443
No 452
>PRK10536 hypothetical protein; Provisional
Probab=98.16 E-value=5e-06 Score=75.17 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=43.4
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcC-cCCCcEEEEeCchh
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIGVTQPRR 59 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~-~~~~~~i~~~~p~~ 59 (466)
-|....|...+..+.+++.+++.||+|||||+++..+..... ...-.+++++.|..
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v 114 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVL 114 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCC
Confidence 377889999999999999999999999999988777666432 22234677777754
No 453
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.16 E-value=2e-06 Score=75.65 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=36.8
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcC-CCcEEEEeCchhH
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQPRRV 60 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~-~~~~i~~~~p~~~ 60 (466)
|....|...++++.+.+.+++.||.|||||+++.......... .-.+++++.|...
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE 60 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 7788999999999999999999999999997666555433222 2347888877643
No 454
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.16 E-value=2.4e-05 Score=75.12 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=48.9
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
....-+|.|+.++..+++..+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 221 ~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPt-s~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l 284 (329)
T PRK14257 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPT-SALDPIATAKIEELILELKK-KYSIIIVTHSM 284 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 345568999999999999999999999999998 78888877765454444443 56677766654
No 455
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.16 E-value=1.7e-05 Score=81.13 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=86.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh---H--HHH-------HHH------H--HHH-----H
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR---V--AAV-------SVA------R--RVA-----Q 71 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~---~--l~~-------~~~------~--~~~-----~ 71 (466)
+..|+.+.|+||+||||||++..+.+...+..|...+...+.. . ... |.. . .+. .
T Consensus 271 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 350 (491)
T PRK10982 271 LHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLIS 350 (491)
T ss_pred EeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehh
Confidence 5689999999999999999999999887665554333221110 0 000 000 0 000 0
Q ss_pred HhCCccCCeeee-eE------------eecc-ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHH
Q 012322 72 ELGVRLGEEVGY-AI------------RFED-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILL 137 (466)
Q Consensus 72 ~~~~~~~~~~g~-~~------------~~~~-~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~ 137 (466)
.... .....+. .. ...- ....+..+.-+|.|+.++..++...+.+++++++||+- ..+|.....
T Consensus 351 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt-~gLD~~~~~ 428 (491)
T PRK10982 351 NIRN-YKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT-RGIDVGAKF 428 (491)
T ss_pred hhhh-hcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCC-cccChhHHH
Confidence 0000 0000000 00 0000 01124456668999999999999999999999999988 788888877
Q ss_pred HHHHHHHHhhhcCceEEEEecccC
Q 012322 138 GLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 138 ~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.+++.+......+..+|+.|+-++
T Consensus 429 ~~~~~l~~l~~~~~tvi~vsHd~~ 452 (491)
T PRK10982 429 EIYQLIAELAKKDKGIIIISSEMP 452 (491)
T ss_pred HHHHHHHHHHHCCCEEEEECCChH
Confidence 766666554444667777777543
No 456
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.16 E-value=2.7e-06 Score=79.54 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=48.7
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
...-++.|+.++..+....+.+.+++++||+- ..+|......+++.+..... +..+|+.|+.+
T Consensus 160 ~~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~ 222 (267)
T PRK14235 160 PGTGLSGGQQQRLCIARAIAVSPEVILMDEPC-SALDPIATAKVEELIDELRQ-NYTIVIVTHSM 222 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH
Confidence 34558999999999999999999999999998 78898887776555555433 55667766654
No 457
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=2.3e-05 Score=74.89 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=77.9
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEE-EEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccce
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i-~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (466)
..+++++++||||+||||++..+.......+.... +-.-|.|..+.++.+..++..+..+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~------------------ 265 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI------------------ 265 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE------------------
Confidence 45788999999999999887777665433222232 33445676666665555554433210
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
...+|..+...+.......++++|+||=+- ++.........++.+.........++.+|||.......+++
T Consensus 266 -~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 266 -VATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred -ecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 113466665544322234568999999998 44333333333566655444355577789988765555443
No 458
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.15 E-value=2.1e-06 Score=79.51 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=49.0
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
.+.-++.|+.++..+....+.+++++++||+- ..+|......+.+.+.+... +..+|+.|+.+
T Consensus 143 ~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~ 205 (250)
T PRK14240 143 SALGLSGGQQQRLCIARALAVEPEVLLMDEPT-SALDPISTLKIEELIQELKK-DYTIVIVTHNM 205 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH
Confidence 34458999999999999999999999999998 78888877775555554433 56777777754
No 459
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=7e-06 Score=76.80 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=49.5
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
..+.-+|.|+.++..+....+.+.+++++||+- ..+|......+.+.+.+... +..+|+.|+.++
T Consensus 160 ~~~~~LSgGq~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 224 (268)
T PRK14248 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPA-SALDPISNAKIEELITELKE-EYSIIIVTHNMQ 224 (268)
T ss_pred cCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCC-cccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH
Confidence 345568999999999999999999999999998 78888887775555554433 456777777543
No 460
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.14 E-value=0.00012 Score=70.56 Aligned_cols=90 Identities=23% Similarity=0.270 Sum_probs=63.9
Q ss_pred CCeEEEeecCCCCHHHHhcccCCCCCC-cce-EEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHH
Q 012322 246 MDAVILPLHGSLPPEMQVRVFSPPPPN-CRR-FIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKV 323 (466)
Q Consensus 246 ~~~~v~~~h~~l~~~~r~~~~~~f~~g-~~~-ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~ 323 (466)
.|+.++-+-|+|++..|...++.|++. .++ .+++-.+.+..+|+-....|+..+ +-|+|.. .|
T Consensus 661 aGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD----PWWNpaV-------e~---- 725 (791)
T KOG1002|consen 661 AGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD----PWWNPAV-------EW---- 725 (791)
T ss_pred cCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec----ccccHHH-------Hh----
Confidence 488999999999999999999999975 334 467778888888888888887622 1112111 11
Q ss_pred HHHHhccccCCCCCCeEEEecCccchh
Q 012322 324 QANQRVGRAGRTRPGKCYRLYPSTVYH 350 (466)
Q Consensus 324 ~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 350 (466)
+..-|+-|.|..+|-++++++-++..+
T Consensus 726 Qa~DRiHRIGQ~rPvkvvrf~iEnsiE 752 (791)
T KOG1002|consen 726 QAQDRIHRIGQYRPVKVVRFCIENSIE 752 (791)
T ss_pred hhhhhHHhhcCccceeEEEeehhccHH
Confidence 333577777777888888887655443
No 461
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.13 E-value=3.7e-05 Score=71.36 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=48.6
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
...-.+.|+.++..+...++.+++++++||+- ..+|......+...+.+... +..+|+.|+-+
T Consensus 150 ~~~~LS~G~~qrl~laral~~~P~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~ 212 (257)
T PRK14246 150 PASQLSGGQQQRLTIARALALKPKVLLMDEPT-SMIDIVNSQAIEKLITELKN-EIAIVIVSHNP 212 (257)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH
Confidence 44558999999999999999999999999998 78888877665555544433 56777777754
No 462
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.13 E-value=9.4e-06 Score=76.09 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=49.7
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
...-.+.|+.++..+....+.+.+++|+||+- ..+|......+.+.+.+... +..+|+.|+.++
T Consensus 165 ~~~~LS~Gq~qrv~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~ 228 (272)
T PRK14236 165 NAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT-SALDPISTLKIEELITELKS-KYTIVIVTHNMQ 228 (272)
T ss_pred CcccCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH
Confidence 45568999999999999999999999999998 78888887776565555543 566777666543
No 463
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.13 E-value=1.9e-05 Score=70.82 Aligned_cols=148 Identities=21% Similarity=0.279 Sum_probs=86.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc-EEEEeCchhHHHHHHHHHHHHHhCCccCCeee-------------
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-IIGVTQPRRVAAVSVARRVAQELGVRLGEEVG------------- 82 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~-~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g------------- 82 (466)
+..|+.+.+.||+|+||||.+.++.+...+..|. ++.-..|.+- -++..+.+.--+|.+.+....
T Consensus 47 IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~-~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~I 125 (325)
T COG4586 47 IPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR-REEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLI 125 (325)
T ss_pred cCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh-HHHHHHHHHHHhhhhheeeeechhhhhHHHHHHH
Confidence 5689999999999999999999999988887665 4444556441 111111221112211111111
Q ss_pred eeEee---ccc-----------cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 83 YAIRF---EDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 83 ~~~~~---~~~-----------~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
|.+.. ..+ ..-+..+--+|-|+..+.-+....++++.++.+||+. -++|......+ +++++...
T Consensus 126 y~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpT-vgLDV~aq~~i-r~Flke~n 203 (325)
T COG4586 126 YEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPT-VGLDVNAQANI-REFLKEYN 203 (325)
T ss_pred HhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCc-cCcchhHHHHH-HHHHHHHH
Confidence 00000 000 0012333447778888877777899999999999988 56666554442 33332211
Q ss_pred --cCceEEEEecccChhHHHhhc
Q 012322 149 --SKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 149 --~~~~ii~~SAT~~~~~~~~~~ 169 (466)
.+..+++.|+-++ .+..|.
T Consensus 204 ~~~~aTVllTTH~~~--di~~lc 224 (325)
T COG4586 204 EERQATVLLTTHIFD--DIATLC 224 (325)
T ss_pred HhhCceEEEEecchh--hHHHhh
Confidence 3677888777664 355554
No 464
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.13 E-value=5.8e-06 Score=81.66 Aligned_cols=144 Identities=24% Similarity=0.208 Sum_probs=89.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHH---------HH--------HHH--hCCc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVAR---------RV--------AQE--LGVR 76 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~---------~~--------~~~--~~~~ 76 (466)
.+..|++..+.|.||+||||++..+.+...++.|...+-..|.....-..+. .+ ++. ++..
T Consensus 30 ~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre 109 (500)
T COG1129 30 TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGRE 109 (500)
T ss_pred EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccc
Confidence 4678999999999999999999999998888777655544332211111111 11 111 1111
Q ss_pred cCCeeeeeEee--------------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHH
Q 012322 77 LGEEVGYAIRF--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (466)
Q Consensus 77 ~~~~~g~~~~~--------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~ 142 (466)
.....|. +.. ......+..+--++.++.+...+++....+.++||+||+- ..+...-...+++.
T Consensus 110 ~~~~~g~-id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPT-aaLt~~E~~~Lf~~ 187 (500)
T COG1129 110 PTRRFGL-IDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPT-AALTVKETERLFDL 187 (500)
T ss_pred cccCCCc-cCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHH
Confidence 0000010 000 0001133445557777777777777777799999999998 66776666666666
Q ss_pred HHHhhhcCceEEEEecccC
Q 012322 143 LVNLRASKLKILITSATLD 161 (466)
Q Consensus 143 i~~~~~~~~~ii~~SAT~~ 161 (466)
+.+.+..+.-+|+.|+-++
T Consensus 188 ir~Lk~~Gv~ii~ISHrl~ 206 (500)
T COG1129 188 IRRLKAQGVAIIYISHRLD 206 (500)
T ss_pred HHHHHhCCCEEEEEcCcHH
Confidence 6666667899999999764
No 465
>PTZ00243 ABC transporter; Provisional
Probab=98.12 E-value=3.5e-06 Score=96.55 Aligned_cols=143 Identities=16% Similarity=0.164 Sum_probs=87.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHHHHHHH---HHhCCccCCeeeeeEee----
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QELGVRLGEEVGYAIRF---- 87 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~~~~~~---~~~~~~~~~~~g~~~~~---- 87 (466)
.+..|+.+.|+|+|||||||++..++....+.+|...+...+.+... .+..+.++ +..-.. ..++..++..
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF-~gTIreNIdp~~~~ 1410 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLF-DGTVRQNVDPFLEA 1410 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccc-cccHHHHhCcccCC
Confidence 35689999999999999999999999988887776666555543221 11111110 000000 0000000000
Q ss_pred --------------cc---ccCc--cceE----EEcCHHHHHHHHhhCCCCCC-CcEEEecCCCccccCHHHHHHHHHHH
Q 012322 88 --------------ED---RTSE--RTLI----KYLTDGVLLREILSNPDLSP-YSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 88 --------------~~---~~~~--~~~i----~~~T~g~l~~~~~~~~~l~~-~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
.+ .... ++.+ .-.|.|+.+++.+++..+++ .+++|+|||- ..+|...-..+.+.+
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEAT-SaLD~~te~~Iq~~L 1489 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEAT-ANIDPALDRQIQATV 1489 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCC-ccCCHHHHHHHHHHH
Confidence 00 0000 1111 23799999999999998885 8999999998 678887766655555
Q ss_pred HHhhhcCceEEEEecccC
Q 012322 144 VNLRASKLKILITSATLD 161 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~~ 161 (466)
.+..+ +..+|..++-+.
T Consensus 1490 ~~~~~-~~TvI~IAHRl~ 1506 (1560)
T PTZ00243 1490 MSAFS-AYTVITIAHRLH 1506 (1560)
T ss_pred HHHCC-CCEEEEEeccHH
Confidence 54444 678888887663
No 466
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.12 E-value=3.8e-06 Score=78.16 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=49.2
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
.+.-++.|+.++..+....+.+++++++||+- ..+|......+.+.+..... +..+|+.|+.+
T Consensus 152 ~~~~LS~Gq~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~ 214 (259)
T PRK14274 152 QALSLSGGQQQRLCIARALATNPDVLLMDEPT-SALDPVSTRKIEELILKLKE-KYTIVIVTHNM 214 (259)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH
Confidence 44558999999999999899999999999998 78888887776555555443 56677777754
No 467
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.12 E-value=1.1e-05 Score=84.60 Aligned_cols=145 Identities=22% Similarity=0.230 Sum_probs=86.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH----HHH---------------------HHHHHH
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA----AVS---------------------VARRVA 70 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l----~~~---------------------~~~~~~ 70 (466)
.+.+|+.+.|+||+||||||++..+++...+..|...+...+.... ... +.+.+.
T Consensus 346 ~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~ 425 (623)
T PRK10261 346 DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIM 425 (623)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHH
Confidence 3568999999999999999999999988765554433322111000 000 000010
Q ss_pred HHh---CCccC----CeeeeeE-eeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 71 QEL---GVRLG----EEVGYAI-RFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 71 ~~~---~~~~~----~~~g~~~-~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
... +.... ..+.... .+.-. ...+..+--+|.|+.++..++...+.+.+++|+||+- ..+|......+++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPt-s~LD~~~~~~i~~ 504 (623)
T PRK10261 426 EPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAV-SALDVSIRGQIIN 504 (623)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHH
Confidence 000 00000 0000000 00000 0112345568999999999999999999999999998 7889888777666
Q ss_pred HHHHhhhc-CceEEEEecccC
Q 012322 142 RLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 142 ~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.+...... +..+|+.|+.++
T Consensus 505 ll~~l~~~~g~tvi~isHdl~ 525 (623)
T PRK10261 505 LLLDLQRDFGIAYLFISHDMA 525 (623)
T ss_pred HHHHHHHhcCCEEEEEeCCHH
Confidence 66554432 567888888654
No 468
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.12 E-value=3.6e-05 Score=76.70 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=48.9
Q ss_pred cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceEEEEecccC
Q 012322 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SAT~~ 161 (466)
.|.|+.+|.+++.....+++++|.||.- ..+|......+++.+..... .+..+++.|+.+.
T Consensus 155 LSGG~rQRv~iAmALa~~P~LLIaDEPT-TaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~ 216 (539)
T COG1123 155 LSGGMRQRVMIAMALALKPKLLIADEPT-TALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216 (539)
T ss_pred cCchHHHHHHHHHHHhCCCCEEEECCCc-cccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence 7899999999999999999999999998 78888876665555544432 3788999888654
No 469
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=2.5e-05 Score=80.16 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=53.8
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
..+.-+|.|+.++..+....+.+++++|+||+- ..+|......+.+.+......+..+|+.|+-++ .+.++.
T Consensus 401 ~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~--~~~~~~ 472 (506)
T PRK13549 401 LAIARLSGGNQQKAVLAKCLLLNPKILILDEPT-RGIDVGAKYEIYKLINQLVQQGVAIIVISSELP--EVLGLS 472 (506)
T ss_pred cccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC-CCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH--HHHHhC
Confidence 445678999999999999999999999999998 788888877765555554444567777777543 344444
No 470
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.12 E-value=2.7e-06 Score=79.48 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=51.5
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
...-.+.|+.++..+....+.+.+++++||+- ..+|......+.+.+.+... +..+|+.|+.++ .+.++.
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~--~~~~~~ 229 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPA-SALDPISTMQLEETMFELKK-NYTIIIVTHNMQ--QAARAS 229 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHHhc
Confidence 34458999999999999899999999999998 78888877765555555433 567777777543 344444
No 471
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.11 E-value=3.5e-05 Score=73.37 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=49.7
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
...-++.|+.++..+...++.+++++++||+- ..+|......+.+.+..... +..+|+.|+.++
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPt-sgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~ 260 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPA-SALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ 260 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH
Confidence 34558999999999999999999999999998 78888887776565555544 456777777553
No 472
>PLN03211 ABC transporter G-25; Provisional
Probab=98.11 E-value=1.9e-06 Score=90.36 Aligned_cols=63 Identities=22% Similarity=0.219 Sum_probs=50.0
Q ss_pred EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 98 ~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.-.|.|+.++..+....+.+++++++||+- ..+|......+++.+.+....+..+|+.|+.++
T Consensus 205 ~~LSgGerqRv~ia~aL~~~P~iLlLDEPt-sgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 205 RGISGGERKRVSIAHEMLINPSLLILDEPT-SGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267 (659)
T ss_pred CCcChhhhhHHHHHHHHHhCCCEEEEeCCC-CCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence 347999999999988899999999999998 789988877766666555444667777777765
No 473
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.11 E-value=4.1e-06 Score=78.60 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=51.7
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
.+.-++.|+.++..+....+.+++++|+||+- ..+|......+.+.+.+... ...+|+.|+.++ .+.++.
T Consensus 160 ~~~~LSgGq~qrl~LAral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~--~~~~~~ 229 (276)
T PRK14271 160 SPFRLSGGQQQLLCLARTLAVNPEVLLLDEPT-SALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA--QAARIS 229 (276)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHHhC
Confidence 34568999999999999889999999999998 78888877765555554443 567777777553 344444
No 474
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.11 E-value=4e-05 Score=70.96 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=51.8
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
...-++.|+.++..+......+++++++||+- ..+|......+.+.+.+... +..+|+.|+.+ +.+.++.
T Consensus 143 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~--~~~~~~~ 212 (250)
T PRK14245 143 SAFALSGGQQQRLCIARAMAVSPSVLLMDEPA-SALDPISTAKVEELIHELKK-DYTIVIVTHNM--QQAARVS 212 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH--HHHHhhC
Confidence 34568999999999998889999999999998 78888887776565555433 56677766654 3344444
No 475
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.10 E-value=2.5e-06 Score=87.39 Aligned_cols=64 Identities=19% Similarity=0.128 Sum_probs=49.9
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
.+.-+|.|+.++..++...+.+++++++||+- ..+|......+.+.+.+....+..+|+.|+.+
T Consensus 138 ~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~ 201 (500)
T TIGR02633 138 PVGDYGGGQQQLVEIAKALNKQARLLILDEPS-SSLTEKETEILLDIIRDLKAHGVACVYISHKL 201 (500)
T ss_pred chhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 35568999999999999999999999999998 78888887776555554444356677777754
No 476
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.10 E-value=7.9e-06 Score=85.67 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=49.2
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-CceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.+.-+|.|+.++..++..++.+++++|+||+- ..+|......+++.+...... +..+|+.|+.++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt-~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~ 230 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPT-TALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG 230 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCC-CccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 44558999999999999999999999999988 788888866655544443322 567788777653
No 477
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=1.1e-05 Score=74.78 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=49.1
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
....-++.|+.++..+....+.+++++++||+- ..+|......+.+.+.... .+..+|+.|+.++
T Consensus 143 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~ 207 (251)
T PRK14249 143 KSGLALSGGQQQRLCIARVLAIEPEVILMDEPC-SALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ 207 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH
Confidence 344558999999999999999999999999998 7888887766555444443 3567777777543
No 478
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=2.6e-06 Score=80.26 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=49.5
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
....-++.|+.++..+....+.+++++++||+- ..+|......+.+.+..... +..+|+.|+.+
T Consensus 176 ~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPt-s~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~ 239 (285)
T PRK14254 176 SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPA-SALDPVATSKIEDLIEELAE-EYTVVIVTHNM 239 (285)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 344568999999999999999999999999998 78898887776665555544 45677766654
No 479
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=4.4e-06 Score=77.31 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=50.7
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
..-.+.|+.++..+....+.+++++++||+- ..+|......+.+.+..... +..+|+.|+.+ +.+..+.
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~--~~~~~~~ 211 (249)
T PRK14253 143 AFGLSGGQQQRLCIARTIAMEPDVILMDEPT-SALDPIATHKIEELMEELKK-NYTIVIVTHSM--QQARRIS 211 (249)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH--HHHHHhC
Confidence 4457899999999988889999999999998 78888877765555554443 56677777754 3444444
No 480
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.10 E-value=1.4e-05 Score=80.90 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=49.9
Q ss_pred cceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecc
Q 012322 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (466)
Q Consensus 94 ~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (466)
...+--+|.|...+..++..++.+++++++||+- ..+|.+...- +...+...+ + .+|++|+.
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPT-NHLD~~~i~W-Le~~L~~~~-g-tviiVSHD 209 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPT-NHLDLESIEW-LEDYLKRYP-G-TVIVVSHD 209 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC-cccCHHHHHH-HHHHHHhCC-C-cEEEEeCC
Confidence 4566678999999999999999999999999998 6788776544 666666554 4 89999984
No 481
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.09 E-value=5.1e-06 Score=77.52 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=51.5
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
.+.-++.|+.++..+....+.+++++++||+- ..+|......+++.+..... +..+|+.|+- .+.+..+.
T Consensus 148 ~~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~--~~~~~~~~ 217 (264)
T PRK14243 148 SGLSLSGGQQQRLCIARAIAVQPEVILMDEPC-SALDPISTLRIEELMHELKE-QYTIIIVTHN--MQQAARVS 217 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEecC--HHHHHHhC
Confidence 34458999999999999999999999999998 78888887776555555443 4566666664 34445554
No 482
>PF13245 AAA_19: Part of AAA domain
Probab=98.09 E-value=1.6e-05 Score=58.32 Aligned_cols=56 Identities=27% Similarity=0.357 Sum_probs=40.2
Q ss_pred HHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhcC--cCCCcEEEEeCchhHHHHHHHHHH
Q 012322 14 VETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--YTKSGIIGVTQPRRVAAVSVARRV 69 (466)
Q Consensus 14 ~~~i~~~~~~ii~apTGsGKT-t~~~~~~~~~~--~~~~~~i~~~~p~~~l~~~~~~~~ 69 (466)
..++.++..++|.||.||||| +.+..+..... ...+.+++++.|++.++.++.+++
T Consensus 4 ~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 4 RRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 335555667788999999999 44444444331 122678999999999999888877
No 483
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.09 E-value=1.9e-05 Score=83.25 Aligned_cols=134 Identities=13% Similarity=0.132 Sum_probs=81.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc-------EEEEeCchh-----HHHHHHH------------------
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-------IIGVTQPRR-----VAAVSVA------------------ 66 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~-------~i~~~~p~~-----~l~~~~~------------------ 66 (466)
+.+|+.+.|+||+||||||++..+.+.....+|. .+.++.... ...+++.
T Consensus 475 i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i 554 (659)
T TIGR00954 475 VPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDL 554 (659)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHH
Confidence 4689999999999999999999999977655443 122222110 0011110
Q ss_pred HHHHHHhCCcc--CCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 67 RRVAQELGVRL--GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 67 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
..+.+..+... ....|+... .....-.+.|+.++..+++..+.+++++|+||+- ..+|.+....+.+.+.
T Consensus 555 ~~~l~~~~l~~~~~~~~g~~~~-------~~~~~~LSgGqkQRl~iARal~~~p~illLDEpt-s~LD~~~~~~l~~~l~ 626 (659)
T TIGR00954 555 EQILDNVQLTHILEREGGWSAV-------QDWMDVLSGGEKQRIAMARLFYHKPQFAILDECT-SAVSVDVEGYMYRLCR 626 (659)
T ss_pred HHHHHHcCCHHHHhhcCCcccc-------cccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHH
Confidence 01111111110 000011000 0012348999999999999999999999999998 7888887666544443
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
+ . +..+|+.|+.++
T Consensus 627 ~-~--~~tvI~isH~~~ 640 (659)
T TIGR00954 627 E-F--GITLFSVSHRKS 640 (659)
T ss_pred H-c--CCEEEEEeCchH
Confidence 2 2 567888887654
No 484
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.09 E-value=3.4e-06 Score=78.23 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=49.0
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
....-.+.|+.++..+....+.+++++++||+. ..+|......+.+.+..... +..+|+.|+.+
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~-~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~ 208 (253)
T PRK14261 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPC-SALDPIATAKIEDLIEDLKK-EYTVIIVTHNM 208 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH
Confidence 344558999999999998899999999999998 78888877775555554443 56677777654
No 485
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.09 E-value=2.2e-06 Score=75.75 Aligned_cols=145 Identities=21% Similarity=0.228 Sum_probs=85.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch-hHHHHHHHHH-----HH--HH-hCCccCCee--e--
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVARR-----VA--QE-LGVRLGEEV--G-- 82 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~-~~l~~~~~~~-----~~--~~-~~~~~~~~~--g-- 82 (466)
.+..|+.+.++||+|+||||++..+.+...++.|...+-..+. .....+.++. +. +. .+.++.+.+ +
T Consensus 26 ~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~ 105 (250)
T COG0411 26 EVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAH 105 (250)
T ss_pred EEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhh
Confidence 3578999999999999999999999999888777655544321 1111221111 00 00 001100000 0
Q ss_pred ----e-----eEee---ccc---------------cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHH
Q 012322 83 ----Y-----AIRF---EDR---------------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI 135 (466)
Q Consensus 83 ----~-----~~~~---~~~---------------~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~ 135 (466)
+ ...+ +.. ...+...--+++|...++-++.....+++++++||+- -.++...
T Consensus 106 ~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPa-AGln~~e 184 (250)
T COG0411 106 ARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA-AGLNPEE 184 (250)
T ss_pred hhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCcc-CCCCHHH
Confidence 0 0000 000 0011222236777777777788888999999999987 5777776
Q ss_pred HHHHHHHHHHhhh-cCceEEEEecccC
Q 012322 136 LLGLVKRLVNLRA-SKLKILITSATLD 161 (466)
Q Consensus 136 ~~~~l~~i~~~~~-~~~~ii~~SAT~~ 161 (466)
...+...+.+.+. .+..+++.-+.++
T Consensus 185 ~~~l~~~i~~i~~~~g~tillIEHdM~ 211 (250)
T COG0411 185 TEELAELIRELRDRGGVTILLIEHDMK 211 (250)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEeccH
Confidence 6665555555554 2478888888765
No 486
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.09 E-value=3.5e-06 Score=78.39 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=52.1
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhcC
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS 170 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~~ 170 (466)
..-.+.|+.++..+...++.+++++++||+. ..+|......+++.+.+... +..+|+.|+.+ +.+.++.+
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEPt-sgLD~~~~~~l~~~l~~~~~-~~tii~isH~~--~~i~~~~d 216 (261)
T PRK14263 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPC-SALDPIATRRVEELMVELKK-DYTIALVTHNM--QQAIRVAD 216 (261)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH--HHHHHhCC
Confidence 4458999999999998899999999999998 78888887776666655543 55666766654 33444443
No 487
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.08 E-value=7.7e-06 Score=94.15 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=89.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH----------------------HHHHHHHHHHHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA----------------------AVSVARRVAQELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l----------------------~~~~~~~~~~~~~ 74 (466)
+.+|+.+.+.||+||||||++..+.+...++.|...+...+.... +.+.....+...+
T Consensus 1962 I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g 2041 (2272)
T TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG 2041 (2272)
T ss_pred EcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC
Confidence 467999999999999999999999998877666544433221100 0111100111111
Q ss_pred CccCC---eeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 75 VRLGE---EVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 75 ~~~~~---~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
..... .+.... ..+-....+..+.-+|.|+.++..++...+.+++++++||+- ..+|......+++.+.+....+
T Consensus 2042 ~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPT-sGLDp~sr~~l~~lL~~l~~~g 2120 (2272)
T TIGR01257 2042 VPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPT-TGMDPQARRMLWNTIVSIIREG 2120 (2272)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCC
Confidence 10000 000000 000000123445668999999999999999999999999998 7899988877766666654446
Q ss_pred ceEEEEecccC
Q 012322 151 LKILITSATLD 161 (466)
Q Consensus 151 ~~ii~~SAT~~ 161 (466)
..+|+.|+.++
T Consensus 2121 ~TIILtTH~me 2131 (2272)
T TIGR01257 2121 RAVVLTSHSME 2131 (2272)
T ss_pred CEEEEEeCCHH
Confidence 67888888764
No 488
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.08 E-value=3.1e-05 Score=64.27 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p 57 (466)
++.+++.||+|+||||++..++....... ..++++.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~ 38 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDG 38 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECC
Confidence 57889999999999999998888765433 23444444
No 489
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=5.1e-06 Score=76.90 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=49.1
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
..+.-++.|+.++..+....+.+.+++++||+- ..+|......+.+.+..... +..+++.|+-+
T Consensus 142 ~~~~~LS~Gq~qrv~laral~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~ 205 (250)
T PRK14266 142 KSALGLSGGQQQRLCIARTIAVSPEVILMDEPC-SALDPISTTKIEDLIHKLKE-DYTIVIVTHNM 205 (250)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH
Confidence 345568999999999999899999999999998 78888877775555554433 56677777654
No 490
>PLN03073 ABC transporter F family; Provisional
Probab=98.08 E-value=9.2e-06 Score=85.86 Aligned_cols=140 Identities=17% Similarity=0.166 Sum_probs=81.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEE-------EEe-Cch-hH--HHHHHHHHHHHHhCCccCCeee-ee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-------GVT-QPR-RV--AAVSVARRVAQELGVRLGEEVG-YA 84 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i-------~~~-~p~-~~--l~~~~~~~~~~~~~~~~~~~~g-~~ 84 (466)
+..|+.+.|+||+||||||++..+++...+..|... .++ +.. .. ........+...........+. ..
T Consensus 532 i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L 611 (718)
T PLN03073 532 IDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL 611 (718)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHH
Confidence 568899999999999999999999998776555322 111 110 00 0000000111100000000000 00
Q ss_pred Eeeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 85 IRFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 85 ~~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
..+.-. ......+.-+|.|+.++..+....+.+++++|+||+- ..+|......+++.+... . ..+|+.|+.+
T Consensus 612 ~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT-~~LD~~s~~~l~~~L~~~-~--gtvIivSHd~ 684 (718)
T PLN03073 612 GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPS-NHLDLDAVEALIQGLVLF-Q--GGVLMVSHDE 684 (718)
T ss_pred HHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCC-CCCCHHHHHHHHHHHHHc-C--CEEEEEECCH
Confidence 000000 0112345568999999999999899999999999988 788888777765555433 2 3677777754
No 491
>PLN03232 ABC transporter C family member; Provisional
Probab=98.07 E-value=1.3e-05 Score=91.80 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=85.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcE-------EEEeCchhHHH--------------HHHHHHHHHHhCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-------IGVTQPRRVAA--------------VSVARRVAQELGV 75 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~-------i~~~~p~~~l~--------------~~~~~~~~~~~~~ 75 (466)
+.+|+.++|+||+||||||++..+++...+.+|.. .++.|..-... .+.+.++.+..+.
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L 719 (1495)
T PLN03232 640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTAL 719 (1495)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 56899999999999999999999999887765432 22222110100 1111111121111
Q ss_pred ccC---CeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCce
Q 012322 76 RLG---EEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (466)
Q Consensus 76 ~~~---~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (466)
... ..-|+.... ..+=.-.|.|+.+|..+++...++.+++++||+- ..+|......+++.++....++..
T Consensus 720 ~~di~~Lp~Gd~T~I------Ge~G~~LSGGQkQRIaLARAly~~~~IlLLDEpt-SaLD~~t~~~I~~~~l~~~l~~kT 792 (1495)
T PLN03232 720 QHDLDLLPGRDLTEI------GERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL-SALDAHVAHQVFDSCMKDELKGKT 792 (1495)
T ss_pred HHHHHhCCCCCCcee------cCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCc-cccCHHHHHHHHHHHhhhhhcCCE
Confidence 000 000110000 0111237999999999999999999999999998 788887766666665543323677
Q ss_pred EEEEecccC
Q 012322 153 ILITSATLD 161 (466)
Q Consensus 153 ii~~SAT~~ 161 (466)
+|+.|+-+.
T Consensus 793 ~IlvTH~~~ 801 (1495)
T PLN03232 793 RVLVTNQLH 801 (1495)
T ss_pred EEEEECChh
Confidence 888887653
No 492
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.07 E-value=4.9e-06 Score=77.09 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=47.9
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
..-++.|+.++..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 147 ~~~LS~Gq~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~ 208 (251)
T PRK14244 147 AFELSGGQQQRLCIARAIAVKPTMLLMDEPC-SALDPVATNVIENLIQELKK-NFTIIVVTHSM 208 (251)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 4458899999999998889999999999998 78888877665555555433 56777777754
No 493
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=8.4e-05 Score=72.86 Aligned_cols=128 Identities=21% Similarity=0.249 Sum_probs=77.0
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcC-C-Cc-EEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCcc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYT-K-SG-IIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~-~-~~-~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (466)
..|+.+.++||||+||||++..+....... + .. .++.....+..+.++...+++.+|+....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~--------------- 253 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRS--------------- 253 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceec---------------
Confidence 457889999999999999888777643211 1 12 23334445777777777777777644311
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhh
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (466)
+.++..+...+. .+.+.++++||.+- +.-........++.+.......-.++++|||...+.+.++
T Consensus 254 ----v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 254 ----IKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ----CCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 012323322222 25678999999987 3433333444456654433334567889999876655443
No 494
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.06 E-value=1.2e-05 Score=82.75 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=52.3
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceEEEEecccChhHHHhhc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SAT~~~~~~~~~~ 169 (466)
.+.-+|.|+.++..++...+.+++++++||+- ..+|......+++.+.+... .+..+|+.|+.++ .+..+.
T Consensus 165 ~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~--~~~~~~ 236 (520)
T TIGR03269 165 IARDLSGGEKQRVVLARQLAKEPFLFLADEPT-GTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE--VIEDLS 236 (520)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH--HHHHhc
Confidence 45568999999999999999999999999988 78888877776555554433 2566777777543 344444
No 495
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.06 E-value=2.6e-05 Score=89.42 Aligned_cols=140 Identities=23% Similarity=0.254 Sum_probs=85.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHHHHHH--------------HHHhCCccCCe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRV--------------AQELGVRLGEE 80 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~~~~~--------------~~~~~~~~~~~ 80 (466)
.+..|+.+.|+|+|||||||++..++.... .+|...+...+..... .+..+++ .+.. .....
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NL--dp~~~ 1317 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL--DPYEQ 1317 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHh--CcccC
Confidence 356899999999999999999999998875 4554444444432211 1111111 1111 00000
Q ss_pred ------------eeeeEeeccccCc--cceEE----EcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHH
Q 012322 81 ------------VGYAIRFEDRTSE--RTLIK----YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (466)
Q Consensus 81 ------------~g~~~~~~~~~~~--~~~i~----~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~ 142 (466)
++..... ..... ++.+- -.+.|+.++..+++..+++.+++|+|||- ..+|.+.-..+.+.
T Consensus 1318 ~tdeei~~aL~~~~L~~~i-~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaT-S~lD~~Te~~I~~~ 1395 (1490)
T TIGR01271 1318 WSDEEIWKVAEEVGLKSVI-EQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPS-AHLDPVTLQIIRKT 1395 (1490)
T ss_pred CCHHHHHHHHHHCCCHHHH-HhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCc-ccCCHHHHHHHHHH
Confidence 0000000 00000 11111 26899999999999999999999999998 78888776665566
Q ss_pred HHHhhhcCceEEEEecccC
Q 012322 143 LVNLRASKLKILITSATLD 161 (466)
Q Consensus 143 i~~~~~~~~~ii~~SAT~~ 161 (466)
+....+ +..+|.+++-++
T Consensus 1396 L~~~~~-~~TvI~IaHRl~ 1413 (1490)
T TIGR01271 1396 LKQSFS-NCTVILSEHRVE 1413 (1490)
T ss_pred HHHHcC-CCEEEEEecCHH
Confidence 655554 778888888653
No 496
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.06 E-value=8.9e-06 Score=85.40 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=83.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEE-------EEe-Cch-hHHH-H-HHHHHHHHHhCCccCCee-ee
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-------GVT-QPR-RVAA-V-SVARRVAQELGVRLGEEV-GY 83 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i-------~~~-~p~-~~l~-~-~~~~~~~~~~~~~~~~~~-g~ 83 (466)
.+..|+.+.|+||+||||||++..+++...+..|... .++ +.. ..+. . .+...+...........+ .+
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDY 413 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHH
Confidence 3568999999999999999999999998766555322 122 211 0000 0 011111100000000000 00
Q ss_pred eEeeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 84 AIRFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 84 ~~~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
...+.-. ......+-.+|.|..++..+....+.+++++|+||+- ..+|......+.+.+... . ..+|+.|+..
T Consensus 414 L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt-~~LD~~~~~~l~~~L~~~-~--gtvi~vSHd~ 487 (638)
T PRK10636 414 LGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPT-NHLDLDMRQALTEALIDF-E--GALVVVSHDR 487 (638)
T ss_pred HHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-CCCCHHHHHHHHHHHHHc-C--CeEEEEeCCH
Confidence 0000000 0123456668999999999999899999999999988 788888877755555443 2 3677777754
No 497
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.05 E-value=6.5e-06 Score=94.77 Aligned_cols=143 Identities=19% Similarity=0.191 Sum_probs=87.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHH-------------------HHHH---HHHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSV-------------------ARRV---AQELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~-------------------~~~~---~~~~~ 74 (466)
+.+|+.+.+.||+||||||++..+.+...++.|...+...+......+. .+.+ +...+
T Consensus 953 I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg 1032 (2272)
T TIGR01257 953 FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG 1032 (2272)
T ss_pred EcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999999988776655433332211100000 0000 01011
Q ss_pred CccCC---eeee-eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 75 VRLGE---EVGY-AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 75 ~~~~~---~~g~-~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
..... .+.. ....+-....+..+.-+|.|+.++..++...+.+.+++++||+. ..+|......+++.+.+.. .+
T Consensus 1033 ~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPT-SGLDp~sr~~l~~lL~~l~-~g 1110 (2272)
T TIGR01257 1033 RSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPT-SGVDPYSRRSIWDLLLKYR-SG 1110 (2272)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHh-CC
Confidence 00000 0000 00000000123345568999999999999999999999999998 7899888777666665554 36
Q ss_pred ceEEEEecccC
Q 012322 151 LKILITSATLD 161 (466)
Q Consensus 151 ~~ii~~SAT~~ 161 (466)
..+|+.|+.++
T Consensus 1111 ~TIIltTHdmd 1121 (2272)
T TIGR01257 1111 RTIIMSTHHMD 1121 (2272)
T ss_pred CEEEEEECCHH
Confidence 67888787664
No 498
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.05 E-value=3.8e-05 Score=79.10 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=54.1
Q ss_pred ceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-CceEEEEecccChhHHHhhc
Q 012322 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 95 ~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
..+.-+|.|+.++..+....+.+++++|+||+- ..+|......+++.+.+.... +..+|+.|+.++ .+.++.
T Consensus 423 ~~~~~LSgGq~qrv~laral~~~p~lLllDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~--~~~~~~ 495 (520)
T TIGR03269 423 KYPDELSEGERHRVALAQVLIKEPRIVILDEPT-GTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD--FVLDVC 495 (520)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH--HHHHhC
Confidence 345568999999999999999999999999998 789988877766666554432 567788777653 344443
No 499
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.05 E-value=3.4e-06 Score=78.15 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=50.9
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
+.-++.|+.++..+....+.+++++++||+- ..+|......+.+.+.+... +..+|+.|+.+ +.+.++.
T Consensus 146 ~~~LS~G~~qrl~laral~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~--~~~~~~~ 214 (252)
T PRK14256 146 AMELSGGQQQRLCIARTIAVKPEVILMDEPA-SALDPISTLKIEELIEELKE-KYTIIIVTHNM--QQAARVS 214 (252)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH--HHHHhhC
Confidence 4458999999999998899999999999998 78888877765555555443 55677777754 3344444
No 500
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.04 E-value=5.3e-05 Score=70.58 Aligned_cols=71 Identities=23% Similarity=0.243 Sum_probs=52.6
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceEEEEecccChhHHHhhc
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SAT~~~~~~~~~~ 169 (466)
...-+|.|+.++..+....+.+++++++||+- ..+|......+.+.+..... .+..+|+.|+.+ +.+.++.
T Consensus 147 ~~~~LSgGq~qrv~laral~~~p~vllLDEP~-~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~--~~i~~~~ 218 (261)
T PRK14258 147 SALDLSGGQQQRLCIARALAVKPKVLLMDEPC-FGLDPIASMKVESLIQSLRLRSELTMVIVSHNL--HQVSRLS 218 (261)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHHHhc
Confidence 44568999999999999999999999999998 78888887776666655332 256777777654 3444444
Done!