Query 012322
Match_columns 466
No_of_seqs 390 out of 3396
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 07:09:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 6.1E-79 2.1E-83 643.4 50.3 461 3-466 92-560 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 5.5E-56 1.9E-60 471.1 23.2 446 5-464 30-547 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 9.8E-55 3.4E-59 460.0 26.4 444 5-465 25-528 (702)
4 2zj8_A DNA helicase, putative 100.0 6.3E-53 2.2E-57 447.4 21.3 444 5-464 23-532 (720)
5 4f92_B U5 small nuclear ribonu 100.0 3.5E-42 1.2E-46 387.3 28.3 439 7-453 928-1449(1724)
6 3fht_A ATP-dependent RNA helic 100.0 5.2E-42 1.8E-46 341.0 24.7 318 5-348 47-380 (412)
7 4f92_B U5 small nuclear ribonu 100.0 1.7E-42 5.7E-47 389.9 23.1 439 7-454 81-619 (1724)
8 3pey_A ATP-dependent RNA helic 100.0 1E-41 3.5E-46 336.9 25.3 318 5-349 27-358 (395)
9 2db3_A ATP-dependent RNA helic 100.0 1.2E-41 3.9E-46 340.0 24.2 307 6-347 79-407 (434)
10 2v1x_A ATP-dependent DNA helic 100.0 4.2E-42 1.4E-46 353.1 20.6 310 6-351 45-378 (591)
11 3eiq_A Eukaryotic initiation f 100.0 1.4E-42 4.8E-47 345.4 16.4 313 5-351 62-391 (414)
12 3l9o_A ATP-dependent RNA helic 100.0 1.6E-41 5.5E-46 369.8 22.1 326 4-348 183-598 (1108)
13 1s2m_A Putative ATP-dependent 100.0 2.8E-40 9.7E-45 327.3 29.0 312 6-351 44-369 (400)
14 2j0s_A ATP-dependent RNA helic 100.0 2.6E-41 9E-46 335.9 20.9 312 6-351 60-387 (410)
15 3fmp_B ATP-dependent RNA helic 100.0 4.5E-42 1.5E-46 348.1 15.5 318 7-348 116-447 (479)
16 1xti_A Probable ATP-dependent 100.0 1.3E-40 4.4E-45 328.7 25.4 310 6-349 31-359 (391)
17 1hv8_A Putative ATP-dependent 100.0 2.4E-40 8.2E-45 323.7 24.0 311 5-351 28-349 (367)
18 2i4i_A ATP-dependent RNA helic 100.0 2.6E-40 8.7E-45 329.5 23.8 313 5-351 37-387 (417)
19 3o8b_A HCV NS3 protease/helica 100.0 5E-41 1.7E-45 343.0 18.2 297 3-350 215-517 (666)
20 1oyw_A RECQ helicase, ATP-depe 100.0 2.8E-40 9.6E-45 336.3 17.5 304 6-350 26-346 (523)
21 1fuu_A Yeast initiation factor 100.0 4.6E-41 1.6E-45 332.2 10.9 314 5-351 43-370 (394)
22 3i5x_A ATP-dependent RNA helic 100.0 1.4E-39 5E-44 336.4 22.0 318 6-350 95-452 (563)
23 3fho_A ATP-dependent RNA helic 100.0 1.5E-40 5.1E-45 338.3 14.3 315 6-347 142-470 (508)
24 3sqw_A ATP-dependent RNA helic 100.0 1.6E-39 5.6E-44 336.3 21.4 318 6-350 44-401 (579)
25 4a4z_A Antiviral helicase SKI2 100.0 1.6E-40 5.4E-45 359.1 13.5 325 4-346 38-491 (997)
26 2jlq_A Serine protease subunit 100.0 9.3E-40 3.2E-44 327.1 15.6 292 13-346 12-310 (451)
27 2xgj_A ATP-dependent RNA helic 100.0 4.3E-39 1.5E-43 347.9 21.7 325 4-347 85-499 (1010)
28 2z0m_A 337AA long hypothetical 100.0 5.5E-39 1.9E-43 310.4 19.4 297 5-345 16-321 (337)
29 2z83_A Helicase/nucleoside tri 100.0 2.4E-38 8.2E-43 317.4 21.5 293 13-347 14-313 (459)
30 2whx_A Serine protease/ntpase/ 100.0 7.8E-39 2.7E-43 329.9 17.8 297 3-345 172-476 (618)
31 2ykg_A Probable ATP-dependent 100.0 6.6E-39 2.2E-43 339.8 17.1 343 5-373 13-551 (696)
32 4a2p_A RIG-I, retinoic acid in 100.0 7.6E-38 2.6E-42 323.2 22.9 330 1-351 3-512 (556)
33 3rc3_A ATP-dependent RNA helic 100.0 6E-39 2E-43 331.6 11.1 315 17-376 152-475 (677)
34 3oiy_A Reverse gyrase helicase 100.0 4.4E-38 1.5E-42 313.0 15.3 299 5-347 21-365 (414)
35 1yks_A Genome polyprotein [con 100.0 2.9E-37 1E-41 307.6 20.5 286 16-345 4-297 (440)
36 3tbk_A RIG-I helicase domain; 100.0 2.3E-37 7.7E-42 319.5 20.0 329 2-351 1-511 (555)
37 1wp9_A ATP-dependent RNA helic 100.0 1E-36 3.5E-41 309.2 22.0 317 4-351 8-479 (494)
38 2v6i_A RNA helicase; membrane, 100.0 9.6E-37 3.3E-41 303.3 20.3 283 19-344 1-287 (431)
39 4a2q_A RIG-I, retinoic acid in 100.0 6E-36 2.1E-40 320.3 23.5 327 4-351 247-753 (797)
40 2wv9_A Flavivirin protease NS2 100.0 3E-36 1E-40 312.5 18.0 286 18-345 239-531 (673)
41 4gl2_A Interferon-induced heli 100.0 4.7E-37 1.6E-41 325.7 7.9 320 2-345 4-517 (699)
42 4a2w_A RIG-I, retinoic acid in 100.0 7.9E-35 2.7E-39 314.9 22.4 326 4-350 247-752 (936)
43 4ddu_A Reverse gyrase; topoiso 100.0 2.4E-34 8.1E-39 313.5 14.3 268 5-302 78-388 (1104)
44 1gm5_A RECG; helicase, replica 100.0 1E-34 3.6E-39 304.4 10.7 299 5-345 368-695 (780)
45 2eyq_A TRCF, transcription-rep 100.0 6.2E-33 2.1E-37 304.2 23.7 299 6-348 604-923 (1151)
46 1gku_B Reverse gyrase, TOP-RG; 100.0 3.2E-33 1.1E-37 304.7 13.4 261 8-301 59-352 (1054)
47 2fwr_A DNA repair protein RAD2 100.0 4E-33 1.4E-37 281.9 12.5 293 4-351 92-458 (472)
48 2oca_A DAR protein, ATP-depend 100.0 2.1E-33 7.1E-38 286.8 10.2 302 5-345 113-453 (510)
49 1tf5_A Preprotein translocase 100.0 5.7E-31 2E-35 271.1 19.3 306 7-349 85-547 (844)
50 3h1t_A Type I site-specific re 100.0 1.4E-30 4.9E-35 270.2 16.6 301 4-337 177-545 (590)
51 2fsf_A Preprotein translocase 100.0 1.4E-29 4.9E-34 260.0 19.5 305 7-348 76-584 (853)
52 1nkt_A Preprotein translocase 100.0 6.3E-29 2.2E-33 255.5 20.7 306 7-349 113-619 (922)
53 3dmq_A RNA polymerase-associat 100.0 3E-28 1E-32 263.8 13.7 314 4-349 152-617 (968)
54 3eaq_A Heat resistant RNA depe 99.9 4.2E-28 1.4E-32 217.5 7.8 173 202-404 20-211 (212)
55 3llm_A ATP-dependent RNA helic 99.9 3.3E-26 1.1E-30 209.0 18.3 172 3-177 59-235 (235)
56 3i32_A Heat resistant RNA depe 99.9 3.9E-27 1.3E-31 221.0 5.9 169 210-409 25-213 (300)
57 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 4.1E-25 1.4E-29 237.7 20.8 313 5-345 271-707 (1038)
58 1z63_A Helicase of the SNF2/RA 99.9 9.2E-26 3.1E-30 229.6 14.9 309 5-351 37-457 (500)
59 1c4o_A DNA nucleotide excision 99.9 9.2E-23 3.2E-27 212.3 26.4 114 212-348 438-551 (664)
60 3jux_A Protein translocase sub 99.9 3.5E-23 1.2E-27 208.7 22.1 165 151-348 410-588 (822)
61 2rb4_A ATP-dependent RNA helic 99.9 5.9E-23 2E-27 178.5 11.2 130 200-351 21-151 (175)
62 2hjv_A ATP-dependent RNA helic 99.9 5.2E-23 1.8E-27 176.6 9.6 114 210-351 32-146 (163)
63 1z3i_X Similar to RAD54-like; 99.9 2.1E-21 7.1E-26 202.3 23.2 113 211-351 414-532 (644)
64 1fuk_A Eukaryotic initiation f 99.9 8.6E-23 2.9E-27 175.6 8.3 118 206-351 23-141 (165)
65 3mwy_W Chromo domain-containin 99.9 5.1E-22 1.7E-26 212.0 15.9 313 4-351 235-688 (800)
66 1t5i_A C_terminal domain of A 99.9 1.3E-22 4.6E-27 175.4 8.8 118 203-348 21-139 (172)
67 2d7d_A Uvrabc system protein B 99.9 8.5E-22 2.9E-26 204.9 15.5 115 212-349 444-558 (661)
68 2jgn_A DBX, DDX3, ATP-dependen 99.9 3.8E-22 1.3E-26 174.6 8.7 112 212-351 45-157 (185)
69 2p6n_A ATP-dependent RNA helic 99.8 1.2E-21 4.2E-26 172.1 8.8 117 202-347 44-161 (191)
70 2yjt_D ATP-dependent RNA helic 99.7 9.3E-23 3.2E-27 176.3 0.0 118 205-350 22-140 (170)
71 3iuy_A Probable ATP-dependent 99.8 3E-20 1E-24 168.7 14.3 168 5-174 42-225 (228)
72 1qde_A EIF4A, translation init 99.8 5.4E-20 1.8E-24 166.6 15.4 174 5-180 36-219 (224)
73 1vec_A ATP-dependent RNA helic 99.8 1.4E-19 4.9E-24 161.5 16.9 166 5-172 25-202 (206)
74 1q0u_A Bstdead; DEAD protein, 99.8 3.4E-20 1.1E-24 167.3 12.3 172 5-178 26-212 (219)
75 3fmo_B ATP-dependent RNA helic 99.8 1E-19 3.5E-24 171.8 15.9 172 6-178 115-298 (300)
76 2oxc_A Probable ATP-dependent 99.8 8E-20 2.7E-24 166.1 14.0 170 6-176 47-227 (230)
77 3ber_A Probable ATP-dependent 99.8 7.3E-20 2.5E-24 168.2 12.8 171 5-177 65-247 (249)
78 3dkp_A Probable ATP-dependent 99.8 3.8E-19 1.3E-23 163.3 17.0 172 6-179 52-242 (245)
79 1t6n_A Probable ATP-dependent 99.8 4.2E-19 1.4E-23 160.2 17.0 168 6-175 37-218 (220)
80 3fe2_A Probable ATP-dependent 99.8 8.6E-20 3E-24 167.2 12.0 171 6-178 52-238 (242)
81 3bor_A Human initiation factor 99.8 1.4E-19 4.8E-24 165.2 13.0 169 6-176 53-233 (237)
82 2pl3_A Probable ATP-dependent 99.8 1.6E-19 5.4E-24 164.8 13.0 173 5-179 47-234 (236)
83 2gxq_A Heat resistant RNA depe 99.8 8.7E-19 3E-23 156.5 16.4 170 5-176 23-204 (207)
84 3ly5_A ATP-dependent RNA helic 99.8 2.2E-19 7.4E-24 166.4 12.0 156 6-164 77-246 (262)
85 1wrb_A DJVLGB; RNA helicase, D 99.8 3.9E-18 1.3E-22 157.3 14.7 171 6-178 46-240 (253)
86 2vl7_A XPD; helicase, unknown 99.8 5.4E-18 1.8E-22 172.9 14.8 126 200-343 372-518 (540)
87 3b6e_A Interferon-induced heli 99.7 1.7E-17 5.8E-22 149.0 8.6 156 3-159 31-216 (216)
88 3i4u_A ATP-dependent RNA helic 99.7 2.7E-17 9.2E-22 150.8 8.4 83 383-465 5-88 (270)
89 2ipc_A Preprotein translocase 99.7 9.1E-16 3.1E-20 157.9 20.3 117 7-128 81-213 (997)
90 1rif_A DAR protein, DNA helica 99.6 5.5E-16 1.9E-20 145.2 8.6 150 4-162 112-264 (282)
91 2fz4_A DNA repair protein RAD2 99.6 1.2E-14 3.9E-19 132.2 12.7 138 4-162 92-230 (237)
92 3crv_A XPD/RAD3 related DNA he 99.6 6.9E-13 2.3E-17 135.7 27.2 167 151-337 316-520 (551)
93 1z5z_A Helicase of the SNF2/RA 99.5 1.5E-14 5.1E-19 133.8 5.7 113 212-351 111-228 (271)
94 4a15_A XPD helicase, ATP-depen 99.3 1.3E-10 4.3E-15 120.0 17.5 129 198-343 434-581 (620)
95 2pcj_A ABC transporter, lipopr 98.7 1E-08 3.4E-13 91.9 5.9 143 17-160 27-200 (224)
96 3tui_C Methionine import ATP-b 98.7 9.8E-09 3.4E-13 97.7 5.7 144 17-161 51-225 (366)
97 3gfo_A Cobalt import ATP-bindi 98.7 6.4E-09 2.2E-13 95.8 4.1 144 17-161 31-205 (275)
98 3tif_A Uncharacterized ABC tra 98.7 1.3E-08 4.4E-13 91.8 5.6 144 17-161 28-207 (235)
99 1vpl_A ABC transporter, ATP-bi 98.7 6.4E-09 2.2E-13 94.9 3.2 143 17-160 38-206 (256)
100 1sgw_A Putative ABC transporte 98.7 1.3E-08 4.5E-13 90.1 4.3 143 17-161 32-194 (214)
101 4g1u_C Hemin import ATP-bindin 98.6 1.4E-08 4.8E-13 93.3 3.5 150 17-169 34-215 (266)
102 1g6h_A High-affinity branched- 98.6 4.4E-09 1.5E-13 96.3 -0.4 144 17-161 30-214 (257)
103 2ff7_A Alpha-hemolysin translo 98.6 1.3E-08 4.4E-13 92.5 2.5 142 17-161 32-205 (247)
104 2olj_A Amino acid ABC transpor 98.6 2.1E-08 7.2E-13 91.8 3.8 150 17-169 47-226 (263)
105 1ji0_A ABC transporter; ATP bi 98.6 1.7E-08 5.8E-13 91.4 2.9 143 17-160 29-199 (240)
106 2nq2_C Hypothetical ABC transp 98.6 2.1E-07 7E-12 84.8 9.9 150 17-169 28-196 (253)
107 3nh6_A ATP-binding cassette SU 98.5 7.8E-08 2.7E-12 89.8 6.4 141 17-160 77-249 (306)
108 3rlf_A Maltose/maltodextrin im 98.5 1.4E-07 4.9E-12 90.3 8.2 136 17-160 26-194 (381)
109 2ixe_A Antigen peptide transpo 98.5 3E-08 1E-12 91.3 3.2 142 17-160 42-217 (271)
110 1b0u_A Histidine permease; ABC 98.5 9.3E-09 3.2E-13 94.3 -0.8 61 99-160 153-213 (262)
111 2yz2_A Putative ABC transporte 98.5 5.1E-07 1.8E-11 82.9 10.7 144 17-161 30-199 (266)
112 1z47_A CYSA, putative ABC-tran 98.5 3.2E-07 1.1E-11 87.3 9.5 141 17-160 38-206 (355)
113 3fvq_A Fe(3+) IONS import ATP- 98.5 3.2E-07 1.1E-11 87.2 9.2 142 17-161 27-200 (359)
114 1w36_D RECD, exodeoxyribonucle 98.5 4.5E-07 1.5E-11 93.4 11.0 140 8-158 152-297 (608)
115 2it1_A 362AA long hypothetical 98.5 3.8E-07 1.3E-11 87.1 9.7 143 17-160 26-194 (362)
116 2ihy_A ABC transporter, ATP-bi 98.5 2.3E-07 7.9E-12 85.7 7.8 144 17-161 44-224 (279)
117 2qi9_C Vitamin B12 import ATP- 98.5 1.9E-08 6.6E-13 91.3 0.5 149 17-169 23-200 (249)
118 2yyz_A Sugar ABC transporter, 98.5 3.9E-07 1.3E-11 86.9 8.7 141 17-160 26-194 (359)
119 2onk_A Molybdate/tungstate ABC 98.4 4.4E-07 1.5E-11 81.8 8.1 141 17-161 22-188 (240)
120 1mv5_A LMRA, multidrug resista 98.4 1.6E-07 5.4E-12 85.2 5.1 142 17-160 25-198 (243)
121 1g29_1 MALK, maltose transport 98.4 6.8E-07 2.3E-11 85.8 9.8 141 17-160 26-200 (372)
122 3b5x_A Lipid A export ATP-bind 98.4 2E-07 6.8E-12 95.8 6.3 143 17-161 366-540 (582)
123 3d31_A Sulfate/molybdate ABC t 98.4 2.4E-07 8.3E-12 88.0 6.3 143 17-160 23-188 (348)
124 1v43_A Sugar-binding transport 98.4 1.3E-08 4.3E-13 97.7 -2.6 141 17-160 34-202 (372)
125 2d2e_A SUFC protein; ABC-ATPas 98.4 2.8E-08 9.5E-13 90.6 -0.3 61 100-161 144-204 (250)
126 2pjz_A Hypothetical protein ST 98.4 1.7E-07 5.7E-12 85.8 4.7 138 17-161 28-186 (263)
127 2pze_A Cystic fibrosis transme 98.4 1.2E-07 4E-12 85.2 3.3 140 17-160 31-190 (229)
128 2cbz_A Multidrug resistance-as 98.4 1.1E-07 3.9E-12 85.7 3.2 141 17-161 28-190 (237)
129 1oxx_K GLCV, glucose, ABC tran 98.4 5.9E-07 2E-11 85.7 8.1 61 99-160 140-201 (353)
130 3qf4_A ABC transporter, ATP-bi 98.4 8E-07 2.7E-11 91.2 9.3 142 17-161 366-539 (587)
131 3qf4_B Uncharacterized ABC tra 98.4 9.7E-08 3.3E-12 98.3 2.4 142 17-161 378-551 (598)
132 2zu0_C Probable ATP-dependent 98.4 7.2E-07 2.5E-11 81.9 7.7 61 100-161 165-225 (267)
133 2ghi_A Transport protein; mult 98.3 8.1E-08 2.8E-12 87.9 1.0 62 98-161 154-215 (260)
134 3ec2_A DNA replication protein 98.3 1.4E-06 5E-11 74.9 8.8 35 19-53 37-71 (180)
135 4a82_A Cystic fibrosis transme 98.3 8.8E-08 3E-12 98.2 -0.1 142 17-161 364-537 (578)
136 3b60_A Lipid A export ATP-bind 98.3 1.5E-07 5E-12 96.8 1.4 142 17-161 366-540 (582)
137 4gp7_A Metallophosphoesterase; 98.3 3.3E-07 1.1E-11 78.3 3.0 60 101-161 85-160 (171)
138 2bbs_A Cystic fibrosis transme 98.2 5E-07 1.7E-11 83.8 3.8 140 17-160 61-219 (290)
139 3e1s_A Exodeoxyribonuclease V, 98.2 3.3E-06 1.1E-10 86.1 9.9 63 5-68 189-251 (574)
140 3j16_B RLI1P; ribosome recycli 98.2 2.2E-06 7.5E-11 87.6 8.6 65 96-161 218-282 (608)
141 3ozx_A RNAse L inhibitor; ATP 98.2 1.5E-06 5E-11 87.9 7.0 141 17-161 291-447 (538)
142 2yl4_A ATP-binding cassette SU 98.2 2.2E-07 7.6E-12 95.7 0.5 142 17-161 367-543 (595)
143 2w0m_A SSO2452; RECA, SSPF, un 98.2 4.2E-06 1.4E-10 75.1 8.8 141 16-160 19-168 (235)
144 1yqt_A RNAse L inhibitor; ATP- 98.2 1.4E-06 4.9E-11 88.1 6.1 144 17-169 309-469 (538)
145 1yqt_A RNAse L inhibitor; ATP- 98.2 3.7E-06 1.3E-10 85.1 9.0 142 16-160 43-218 (538)
146 3gd7_A Fusion complex of cysti 98.2 1.7E-06 6E-11 83.4 5.9 59 100-160 156-214 (390)
147 4f4c_A Multidrug resistance pr 98.1 4E-07 1.4E-11 101.9 0.9 143 17-161 1102-1277(1321)
148 3bk7_A ABC transporter ATP-bin 98.1 2.1E-06 7.1E-11 88.0 6.1 142 17-161 379-533 (607)
149 3j16_B RLI1P; ribosome recycli 98.1 2.3E-06 7.7E-11 87.6 6.2 139 19-161 377-529 (608)
150 4f4c_A Multidrug resistance pr 98.1 6.8E-07 2.3E-11 100.0 2.1 137 17-161 441-614 (1321)
151 3bk7_A ABC transporter ATP-bin 98.1 5.5E-06 1.9E-10 84.8 8.4 141 16-161 113-289 (607)
152 2kjq_A DNAA-related protein; s 98.1 7.9E-06 2.7E-10 67.8 7.5 28 19-46 35-62 (149)
153 3ozx_A RNAse L inhibitor; ATP 98.1 4.6E-06 1.6E-10 84.2 7.1 64 96-161 135-198 (538)
154 3upu_A ATP-dependent DNA helic 98.1 6.2E-06 2.1E-10 82.1 8.0 64 6-69 26-94 (459)
155 2pt7_A CAG-ALFA; ATPase, prote 98.0 1.7E-05 5.9E-10 75.0 9.7 114 12-163 163-278 (330)
156 1ye8_A Protein THEP1, hypothet 98.0 3.4E-05 1.2E-09 66.0 10.6 72 96-170 73-151 (178)
157 1cr0_A DNA primase/helicase; R 98.0 2.4E-05 8.1E-10 73.1 10.5 44 11-54 26-70 (296)
158 2ehv_A Hypothetical protein PH 98.0 9.2E-06 3.2E-10 73.7 7.4 27 16-42 26-52 (251)
159 3g5u_A MCG1178, multidrug resi 97.9 1.2E-06 4.2E-11 97.7 0.2 141 17-160 413-585 (1284)
160 3kl4_A SRP54, signal recogniti 97.9 7.4E-05 2.5E-09 72.9 11.3 125 20-161 97-224 (433)
161 4aby_A DNA repair protein RECN 97.9 6E-05 2.1E-09 74.0 10.8 59 100-160 296-356 (415)
162 2b8t_A Thymidine kinase; deoxy 97.9 9.9E-05 3.4E-09 65.3 10.8 115 18-158 10-124 (223)
163 4a74_A DNA repair and recombin 97.8 2.2E-05 7.5E-10 70.2 6.7 31 16-46 21-51 (231)
164 3jvv_A Twitching mobility prot 97.8 5.3E-05 1.8E-09 72.3 9.4 37 17-53 120-156 (356)
165 3ux8_A Excinuclease ABC, A sub 97.8 2.4E-05 8.4E-10 81.6 7.4 64 97-161 200-265 (670)
166 3g5u_A MCG1178, multidrug resi 97.8 1.5E-05 5E-10 89.1 6.0 143 17-161 1056-1231(1284)
167 1fnn_A CDC6P, cell division co 97.8 0.00016 5.4E-09 70.1 12.5 118 22-160 46-169 (389)
168 1nlf_A Regulatory protein REPA 97.8 5.3E-05 1.8E-09 70.0 8.0 30 16-45 26-55 (279)
169 2cvh_A DNA repair and recombin 97.8 5.9E-05 2E-09 66.8 7.9 27 16-42 16-42 (220)
170 1vma_A Cell division protein F 97.7 0.00021 7.1E-09 66.7 11.2 125 19-160 103-234 (306)
171 2iw3_A Elongation factor 3A; a 97.7 7.4E-05 2.5E-09 79.8 8.9 134 17-169 458-612 (986)
172 2px0_A Flagellar biosynthesis 97.7 0.00028 9.5E-09 65.6 11.6 128 19-169 104-233 (296)
173 2w58_A DNAI, primosome compone 97.7 0.00016 5.6E-09 63.1 9.4 34 21-54 55-88 (202)
174 3dm5_A SRP54, signal recogniti 97.7 0.00029 9.9E-09 68.7 11.8 125 20-161 100-225 (443)
175 3e70_C DPA, signal recognition 97.7 0.00015 5.2E-09 68.3 9.3 127 19-162 128-255 (328)
176 3te6_A Regulatory protein SIR3 97.6 0.00065 2.2E-08 63.4 12.8 122 19-161 44-174 (318)
177 3n70_A Transport activator; si 97.6 0.00047 1.6E-08 56.7 10.5 38 8-45 12-49 (145)
178 1pzn_A RAD51, DNA repair and r 97.6 5.9E-05 2E-09 72.0 5.6 28 17-44 128-155 (349)
179 1n0w_A DNA repair protein RAD5 97.6 0.00018 6.2E-09 64.7 8.2 29 16-44 20-48 (243)
180 2orw_A Thymidine kinase; TMTK, 97.5 0.00021 7.1E-09 61.5 7.6 39 19-58 2-40 (184)
181 1ls1_A Signal recognition part 97.5 0.00061 2.1E-08 63.3 11.3 126 19-161 97-223 (295)
182 2iw3_A Elongation factor 3A; a 97.5 8.2E-05 2.8E-09 79.4 5.8 59 98-160 900-958 (986)
183 1njg_A DNA polymerase III subu 97.5 0.00088 3E-08 59.8 11.6 35 11-45 33-70 (250)
184 2yhs_A FTSY, cell division pro 97.5 0.00087 3E-08 66.0 12.1 39 19-57 292-330 (503)
185 3co5_A Putative two-component 97.5 0.00056 1.9E-08 56.1 9.3 35 8-42 15-49 (143)
186 1l8q_A Chromosomal replication 97.5 0.00091 3.1E-08 63.1 12.0 27 20-46 37-63 (324)
187 1sxj_E Activator 1 40 kDa subu 97.5 0.00087 3E-08 64.0 11.9 44 115-161 132-175 (354)
188 3bos_A Putative DNA replicatio 97.4 0.00072 2.5E-08 60.4 10.7 28 19-46 51-78 (242)
189 2v1u_A Cell division control p 97.4 0.00044 1.5E-08 66.8 9.7 26 19-44 43-68 (387)
190 2r6a_A DNAB helicase, replicat 97.4 0.00022 7.4E-09 70.8 7.5 43 12-54 195-237 (454)
191 1tf7_A KAIC; homohexamer, hexa 97.4 0.00032 1.1E-08 71.0 8.6 134 16-160 277-417 (525)
192 2chg_A Replication factor C sm 97.4 0.0026 9E-08 55.7 13.8 35 10-44 26-62 (226)
193 3b85_A Phosphate starvation-in 97.4 8.8E-05 3E-09 65.1 3.6 45 5-50 7-51 (208)
194 1xx6_A Thymidine kinase; NESG, 97.4 0.00077 2.6E-08 58.1 9.4 40 18-58 6-45 (191)
195 2o0j_A Terminase, DNA packagin 97.4 0.0031 1.1E-07 60.5 14.3 70 4-73 162-232 (385)
196 2qby_A CDC6 homolog 1, cell di 97.3 0.00032 1.1E-08 67.7 7.2 26 20-45 45-70 (386)
197 2qgz_A Helicase loader, putati 97.3 0.00063 2.1E-08 63.6 8.2 26 20-45 152-177 (308)
198 3thx_A DNA mismatch repair pro 97.2 0.00092 3.1E-08 71.5 9.8 46 115-161 739-786 (934)
199 2gk6_A Regulator of nonsense t 97.2 0.00048 1.6E-08 71.2 7.5 66 6-71 181-246 (624)
200 3ux8_A Excinuclease ABC, A sub 97.2 0.00049 1.7E-08 71.8 7.4 63 98-161 542-607 (670)
201 4b3f_X DNA-binding protein smu 97.2 0.00052 1.8E-08 71.3 7.6 65 6-71 190-255 (646)
202 2eyu_A Twitching motility prot 97.2 0.00016 5.5E-09 65.9 3.2 41 17-57 22-63 (261)
203 3thx_B DNA mismatch repair pro 97.2 0.0022 7.5E-08 68.5 12.2 52 115-167 750-803 (918)
204 2npi_A Protein CLP1; CLP1-PCF1 97.2 3.5E-05 1.2E-09 76.2 -1.6 143 13-161 131-299 (460)
205 3cpe_A Terminase, DNA packagin 97.2 0.0062 2.1E-07 62.4 15.1 71 4-74 162-233 (592)
206 2qby_B CDC6 homolog 3, cell di 97.2 0.00067 2.3E-08 65.5 7.6 25 20-44 45-69 (384)
207 1e69_A Chromosome segregation 97.2 0.001 3.6E-08 62.6 8.7 61 98-160 218-282 (322)
208 2z4s_A Chromosomal replication 97.2 0.004 1.4E-07 61.3 12.9 25 20-44 130-154 (440)
209 1a5t_A Delta prime, HOLB; zinc 97.1 0.002 6.9E-08 61.0 10.4 39 7-45 4-49 (334)
210 1p9r_A General secretion pathw 97.1 0.0006 2E-08 66.4 6.4 40 18-57 165-204 (418)
211 2bjv_A PSP operon transcriptio 97.1 0.0027 9.2E-08 57.9 10.3 34 13-46 22-55 (265)
212 3lda_A DNA repair protein RAD5 97.1 0.0011 3.7E-08 64.2 7.7 27 17-43 175-201 (400)
213 1tf7_A KAIC; homohexamer, hexa 97.1 0.00032 1.1E-08 70.9 4.2 42 16-57 35-78 (525)
214 2zpa_A Uncharacterized protein 97.0 0.0025 8.5E-08 65.2 10.3 111 8-162 178-290 (671)
215 2wjy_A Regulator of nonsense t 97.0 0.001 3.6E-08 70.3 7.9 66 6-71 357-422 (800)
216 2q6t_A DNAB replication FORK h 97.0 0.0012 4.3E-08 65.1 8.0 64 12-76 192-256 (444)
217 1ojl_A Transcriptional regulat 97.0 0.0017 5.9E-08 60.5 8.5 35 12-46 17-51 (304)
218 2gza_A Type IV secretion syste 97.0 0.00068 2.3E-08 64.9 5.7 40 11-50 166-205 (361)
219 1sxj_C Activator 1 40 kDa subu 97.0 0.0026 8.9E-08 60.3 9.7 34 12-45 36-71 (340)
220 3k1j_A LON protease, ATP-depen 97.0 0.016 5.4E-07 59.6 16.1 38 11-48 51-88 (604)
221 2p65_A Hypothetical protein PF 97.0 0.0027 9.4E-08 54.0 8.9 34 11-44 32-67 (187)
222 2xzl_A ATP-dependent helicase 97.0 0.00077 2.6E-08 71.3 6.3 66 6-71 361-426 (802)
223 2zr9_A Protein RECA, recombina 97.0 0.0042 1.4E-07 59.0 10.8 40 16-55 57-96 (349)
224 3qkt_A DNA double-strand break 97.0 0.011 3.8E-07 56.0 13.7 60 99-159 248-313 (339)
225 3u61_B DNA polymerase accessor 97.0 0.0091 3.1E-07 56.1 13.1 33 12-44 37-72 (324)
226 3vkw_A Replicase large subunit 97.0 0.0018 6.3E-08 62.9 8.2 93 20-140 161-255 (446)
227 1sxj_D Activator 1 41 kDa subu 96.9 0.0012 4.2E-08 62.9 7.0 35 10-44 46-82 (353)
228 1ewq_A DNA mismatch repair pro 96.9 0.0014 4.9E-08 68.7 7.8 25 20-44 576-600 (765)
229 3b9q_A Chloroplast SRP recepto 96.9 0.0011 3.7E-08 61.8 6.2 53 18-70 98-151 (302)
230 2oap_1 GSPE-2, type II secreti 96.9 0.00092 3.1E-08 66.9 6.1 38 12-49 252-289 (511)
231 1jr3_A DNA polymerase III subu 96.9 0.0049 1.7E-07 59.1 11.2 34 12-45 27-63 (373)
232 1htw_A HI0065; nucleotide-bind 96.9 0.00055 1.9E-08 57.1 3.8 32 18-50 31-62 (158)
233 4a1f_A DNAB helicase, replicat 96.9 0.00092 3.2E-08 63.0 5.7 57 11-69 37-93 (338)
234 1j8m_F SRP54, signal recogniti 96.9 0.0047 1.6E-07 57.3 10.2 124 20-160 98-224 (297)
235 1znw_A Guanylate kinase, GMP k 96.9 0.00069 2.4E-08 59.4 4.0 31 15-45 15-45 (207)
236 1iqp_A RFCS; clamp loader, ext 96.9 0.005 1.7E-07 57.7 10.4 34 11-44 35-70 (327)
237 1w4r_A Thymidine kinase; type 96.9 0.0017 5.6E-08 55.7 6.2 39 19-58 19-57 (195)
238 1zu4_A FTSY; GTPase, signal re 96.8 0.013 4.3E-07 54.9 12.7 44 19-62 104-148 (320)
239 1sxj_A Activator 1 95 kDa subu 96.8 0.0061 2.1E-07 61.3 11.3 24 21-44 78-101 (516)
240 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.0039 1.3E-07 58.6 9.3 25 20-44 45-69 (322)
241 2qen_A Walker-type ATPase; unk 96.8 0.0078 2.7E-07 56.9 11.5 35 10-44 21-55 (350)
242 2j9r_A Thymidine kinase; TK1, 96.8 0.0029 9.9E-08 55.1 7.5 40 19-59 27-66 (214)
243 3eie_A Vacuolar protein sortin 96.8 0.0043 1.5E-07 58.4 9.3 25 20-44 51-75 (322)
244 3b9p_A CG5977-PA, isoform A; A 96.8 0.0052 1.8E-07 57.0 9.6 25 20-44 54-78 (297)
245 4fcw_A Chaperone protein CLPB; 96.8 0.0048 1.6E-07 57.6 9.3 34 21-54 48-81 (311)
246 2og2_A Putative signal recogni 96.8 0.0017 5.9E-08 61.7 6.1 52 19-70 156-208 (359)
247 3hr8_A Protein RECA; alpha and 96.7 0.0073 2.5E-07 57.3 10.3 38 17-54 58-95 (356)
248 3h4m_A Proteasome-activating n 96.7 0.0021 7.1E-08 59.3 6.5 27 18-44 49-75 (285)
249 1hqc_A RUVB; extended AAA-ATPa 96.7 0.011 3.8E-07 55.4 11.6 25 20-44 38-62 (324)
250 3syl_A Protein CBBX; photosynt 96.7 0.0064 2.2E-07 56.6 9.8 25 20-44 67-91 (309)
251 2ffh_A Protein (FFH); SRP54, s 96.7 0.011 3.9E-07 57.3 11.3 124 20-160 98-222 (425)
252 2qp9_X Vacuolar protein sortin 96.7 0.0039 1.3E-07 59.5 8.0 25 20-44 84-108 (355)
253 3tr0_A Guanylate kinase, GMP k 96.7 0.0012 4.2E-08 57.4 4.1 28 17-44 4-31 (205)
254 1rj9_A FTSY, signal recognitio 96.6 0.0023 7.7E-08 59.6 6.0 40 19-58 101-140 (304)
255 1w5s_A Origin recognition comp 96.6 0.0029 1E-07 61.6 7.1 44 392-435 350-397 (412)
256 1z6g_A Guanylate kinase; struc 96.6 0.0011 3.9E-08 58.5 3.7 30 15-44 18-47 (218)
257 1d2n_A N-ethylmaleimide-sensit 96.6 0.0093 3.2E-07 54.5 10.1 25 20-44 64-88 (272)
258 2orv_A Thymidine kinase; TP4A 96.6 0.0043 1.5E-07 54.6 7.0 40 19-59 18-57 (234)
259 2ewv_A Twitching motility prot 96.6 0.0011 3.6E-08 63.8 3.4 41 17-57 133-174 (372)
260 1kgd_A CASK, peripheral plasma 96.6 0.0016 5.6E-08 55.5 4.2 28 18-45 3-30 (180)
261 3vfd_A Spastin; ATPase, microt 96.6 0.0075 2.6E-07 58.3 9.4 25 20-44 148-172 (389)
262 2vf7_A UVRA2, excinuclease ABC 96.5 0.0044 1.5E-07 65.5 8.0 64 97-161 728-794 (842)
263 3pih_A Uvrabc system protein A 96.5 0.0072 2.5E-07 64.4 9.8 62 99-161 805-869 (916)
264 1s96_A Guanylate kinase, GMP k 96.5 0.0017 5.9E-08 57.3 4.2 30 16-45 12-41 (219)
265 1wb9_A DNA mismatch repair pro 96.5 0.0055 1.9E-07 64.6 8.7 26 18-43 605-630 (800)
266 3pfi_A Holliday junction ATP-d 96.5 0.011 3.9E-07 55.8 10.2 24 21-44 56-79 (338)
267 3pvs_A Replication-associated 96.5 0.0037 1.3E-07 61.5 7.0 32 13-44 41-74 (447)
268 2v9p_A Replication protein E1; 96.5 0.0021 7.1E-08 59.6 4.8 31 14-44 120-150 (305)
269 1lvg_A Guanylate kinase, GMP k 96.5 0.0014 4.9E-08 56.9 3.4 28 18-45 2-29 (198)
270 3d8b_A Fidgetin-like protein 1 96.4 0.0056 1.9E-07 58.5 7.2 26 19-44 116-141 (357)
271 1zp6_A Hypothetical protein AT 96.4 0.0014 4.8E-08 56.4 2.7 28 16-43 5-32 (191)
272 2o8b_B DNA mismatch repair pro 96.4 0.0095 3.2E-07 64.6 9.4 23 20-43 789-811 (1022)
273 1sxj_B Activator 1 37 kDa subu 96.3 0.014 4.8E-07 54.5 9.6 34 11-44 31-66 (323)
274 3a00_A Guanylate kinase, GMP k 96.3 0.0022 7.6E-08 55.0 3.5 26 20-45 1-26 (186)
275 2gno_A DNA polymerase III, gam 96.3 0.012 4.1E-07 54.7 8.6 30 13-42 9-40 (305)
276 3e2i_A Thymidine kinase; Zn-bi 96.3 0.0048 1.6E-07 53.6 5.3 41 18-59 26-66 (219)
277 2zts_A Putative uncharacterize 96.3 0.0034 1.2E-07 56.4 4.6 28 17-44 27-54 (251)
278 2ygr_A Uvrabc system protein A 96.3 0.01 3.6E-07 63.2 8.9 64 97-161 861-927 (993)
279 3c8u_A Fructokinase; YP_612366 96.2 0.0014 4.8E-08 57.4 1.7 29 18-46 20-48 (208)
280 2j41_A Guanylate kinase; GMP, 96.2 0.003 1E-07 55.0 3.8 28 17-44 3-30 (207)
281 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.008 2.7E-07 54.4 6.7 26 19-44 38-63 (262)
282 3aez_A Pantothenate kinase; tr 96.2 0.0026 8.8E-08 59.5 3.4 33 17-49 87-119 (312)
283 3tau_A Guanylate kinase, GMP k 96.2 0.0033 1.1E-07 55.0 3.9 28 18-45 6-33 (208)
284 3ney_A 55 kDa erythrocyte memb 96.1 0.0043 1.5E-07 53.5 4.2 28 18-45 17-44 (197)
285 3uk6_A RUVB-like 2; hexameric 96.1 0.0068 2.3E-07 58.0 6.1 25 21-45 71-95 (368)
286 2fna_A Conserved hypothetical 96.1 0.039 1.3E-06 52.1 11.4 32 11-44 23-54 (357)
287 2ce7_A Cell division protein F 96.1 0.0072 2.5E-07 59.7 6.3 24 21-44 50-73 (476)
288 2chq_A Replication factor C sm 96.0 0.006 2.1E-07 57.0 5.3 32 13-44 29-62 (319)
289 3lfu_A DNA helicase II; SF1 he 96.0 0.0075 2.6E-07 62.6 6.3 68 6-75 10-80 (647)
290 1u94_A RECA protein, recombina 96.0 0.027 9.3E-07 53.5 9.5 39 17-55 60-98 (356)
291 3lnc_A Guanylate kinase, GMP k 95.9 0.0024 8.4E-08 56.8 2.0 29 16-44 23-52 (231)
292 2zan_A Vacuolar protein sortin 95.9 0.012 4.3E-07 57.8 7.2 25 20-44 167-191 (444)
293 2i3b_A HCR-ntpase, human cance 95.9 0.0034 1.2E-07 54.0 2.7 29 20-49 1-29 (189)
294 1tq4_A IIGP1, interferon-induc 95.9 0.0073 2.5E-07 58.5 5.3 29 22-50 71-99 (413)
295 1xp8_A RECA protein, recombina 95.9 0.045 1.6E-06 52.1 10.7 40 16-55 70-109 (366)
296 1sq5_A Pantothenate kinase; P- 95.9 0.012 4E-07 55.0 6.5 36 18-53 78-115 (308)
297 3asz_A Uridine kinase; cytidin 95.8 0.0048 1.6E-07 54.0 3.4 28 18-45 4-31 (211)
298 4eun_A Thermoresistant glucoki 95.8 0.0062 2.1E-07 52.8 4.0 27 18-44 27-53 (200)
299 3bgw_A DNAB-like replicative h 95.8 0.015 5.3E-07 57.1 7.2 44 12-56 189-232 (444)
300 2obl_A ESCN; ATPase, hydrolase 95.8 0.0088 3E-07 56.7 5.3 43 15-57 66-108 (347)
301 2v3c_C SRP54, signal recogniti 95.8 0.0067 2.3E-07 59.3 4.6 26 21-46 100-125 (432)
302 3sop_A Neuronal-specific septi 95.8 0.0052 1.8E-07 56.1 3.4 29 22-50 4-32 (270)
303 2xxa_A Signal recognition part 95.8 0.053 1.8E-06 52.9 10.7 123 21-160 101-225 (433)
304 2dr3_A UPF0273 protein PH0284; 95.8 0.007 2.4E-07 54.2 4.2 40 16-55 19-58 (247)
305 2jeo_A Uridine-cytidine kinase 95.7 0.0057 2E-07 55.0 3.3 29 16-44 21-49 (245)
306 3vaa_A Shikimate kinase, SK; s 95.7 0.0084 2.9E-07 51.9 4.2 29 16-44 21-49 (199)
307 1rz3_A Hypothetical protein rb 95.7 0.015 5.1E-07 50.4 5.8 35 19-53 21-55 (201)
308 3uie_A Adenylyl-sulfate kinase 95.6 0.0082 2.8E-07 52.0 4.1 30 16-45 21-50 (200)
309 3tqc_A Pantothenate kinase; bi 95.6 0.021 7E-07 53.4 6.9 33 13-45 79-117 (321)
310 3cmu_A Protein RECA, recombina 95.6 0.045 1.5E-06 62.8 10.6 40 17-57 1424-1463(2050)
311 3kta_A Chromosome segregation 95.5 0.0099 3.4E-07 50.5 4.2 25 21-45 27-51 (182)
312 2qm8_A GTPase/ATPase; G protei 95.5 0.0071 2.4E-07 57.2 3.5 39 17-55 52-90 (337)
313 3hu3_A Transitional endoplasmi 95.5 0.017 5.8E-07 57.4 6.4 27 18-44 236-262 (489)
314 1kag_A SKI, shikimate kinase I 95.5 0.009 3.1E-07 50.3 3.8 27 19-45 3-29 (173)
315 2j37_W Signal recognition part 95.5 0.056 1.9E-06 53.7 9.9 123 22-161 103-226 (504)
316 1q57_A DNA primase/helicase; d 95.5 0.065 2.2E-06 53.6 10.6 58 11-69 233-290 (503)
317 3pxi_A Negative regulator of g 95.5 0.028 9.7E-07 59.4 8.3 23 22-44 523-545 (758)
318 4b4t_J 26S protease regulatory 95.4 0.025 8.6E-07 54.3 6.9 27 19-45 181-207 (405)
319 2bdt_A BH3686; alpha-beta prot 95.4 0.0068 2.3E-07 52.0 2.7 23 20-42 2-24 (189)
320 1knq_A Gluconate kinase; ALFA/ 95.3 0.0097 3.3E-07 50.2 3.4 26 19-44 7-32 (175)
321 2dpy_A FLII, flagellum-specifi 95.3 0.015 5.2E-07 56.9 5.1 42 15-56 152-193 (438)
322 2vp4_A Deoxynucleoside kinase; 95.3 0.0092 3.2E-07 53.0 3.3 37 18-58 18-54 (230)
323 2qor_A Guanylate kinase; phosp 95.3 0.0098 3.3E-07 51.7 3.4 28 17-44 9-36 (204)
324 2yv5_A YJEQ protein; hydrolase 95.2 0.02 6.8E-07 53.2 5.4 34 16-50 161-194 (302)
325 3euj_A Chromosome partition pr 95.2 0.012 4.2E-07 58.0 4.0 36 17-53 27-62 (483)
326 2bbw_A Adenylate kinase 4, AK4 95.1 0.013 4.3E-07 52.7 3.7 26 19-44 26-51 (246)
327 4eaq_A DTMP kinase, thymidylat 95.1 0.029 9.9E-07 49.7 5.9 41 18-59 24-64 (229)
328 1jbk_A CLPB protein; beta barr 95.1 0.028 9.7E-07 47.6 5.7 35 10-44 31-67 (195)
329 2rcn_A Probable GTPase ENGC; Y 95.0 0.02 6.7E-07 54.3 4.7 34 17-50 212-246 (358)
330 1u0l_A Probable GTPase ENGC; p 94.9 0.017 5.8E-07 53.6 4.0 34 17-50 166-199 (301)
331 1f2t_A RAD50 ABC-ATPase; DNA d 94.9 0.016 5.5E-07 47.6 3.4 24 20-43 23-46 (149)
332 1nij_A Hypothetical protein YJ 94.9 0.015 5E-07 54.6 3.5 24 21-44 5-28 (318)
333 1ex7_A Guanylate kinase; subst 94.9 0.019 6.4E-07 49.1 3.7 24 21-44 2-25 (186)
334 1uaa_A REP helicase, protein ( 94.8 0.024 8.3E-07 59.0 5.4 68 6-75 3-73 (673)
335 2yvu_A Probable adenylyl-sulfa 94.8 0.021 7.2E-07 48.7 4.1 31 19-49 12-42 (186)
336 3szr_A Interferon-induced GTP- 94.8 0.033 1.1E-06 57.1 6.2 25 22-46 47-71 (608)
337 4b4t_H 26S protease regulatory 94.8 0.049 1.7E-06 53.1 7.0 27 19-45 242-268 (467)
338 4e22_A Cytidylate kinase; P-lo 94.8 0.023 7.7E-07 51.3 4.3 27 18-44 25-51 (252)
339 1qhx_A CPT, protein (chloramph 94.7 0.024 8.1E-07 47.9 4.1 26 20-45 3-28 (178)
340 1lw7_A Transcriptional regulat 94.7 0.014 4.7E-07 55.9 2.8 33 16-48 164-198 (365)
341 1in4_A RUVB, holliday junction 94.7 0.023 7.8E-07 53.6 4.2 24 21-44 52-75 (334)
342 1qvr_A CLPB protein; coiled co 94.6 0.059 2E-06 57.7 7.8 33 12-44 181-215 (854)
343 2qt1_A Nicotinamide riboside k 94.6 0.016 5.4E-07 50.4 2.8 32 13-44 14-45 (207)
344 1g5t_A COB(I)alamin adenosyltr 94.5 0.042 1.4E-06 47.0 5.1 38 19-57 27-64 (196)
345 3trf_A Shikimate kinase, SK; a 94.5 0.028 9.4E-07 47.8 4.1 25 20-44 5-29 (185)
346 3a8t_A Adenylate isopentenyltr 94.5 0.019 6.6E-07 53.7 3.2 25 20-44 40-64 (339)
347 2f1r_A Molybdopterin-guanine d 94.5 0.013 4.5E-07 49.3 1.9 27 21-47 3-29 (171)
348 2qag_B Septin-6, protein NEDD5 94.5 0.016 5.4E-07 56.2 2.7 31 13-43 33-65 (427)
349 2ze6_A Isopentenyl transferase 94.5 0.022 7.7E-07 51.3 3.6 23 22-44 3-25 (253)
350 4ag6_A VIRB4 ATPase, type IV s 94.5 0.029 1E-06 54.2 4.6 41 19-60 34-74 (392)
351 1pjr_A PCRA; DNA repair, DNA r 94.4 0.043 1.5E-06 57.6 6.0 67 6-74 12-81 (724)
352 1cke_A CK, MSSA, protein (cyti 94.4 0.028 9.4E-07 49.6 3.9 25 20-44 5-29 (227)
353 3kb2_A SPBC2 prophage-derived 94.4 0.029 1E-06 46.9 3.9 24 22-45 3-26 (173)
354 3exa_A TRNA delta(2)-isopenten 94.3 0.025 8.7E-07 52.2 3.6 25 20-44 3-27 (322)
355 3cm0_A Adenylate kinase; ATP-b 94.3 0.022 7.6E-07 48.4 3.0 26 19-44 3-28 (186)
356 1kht_A Adenylate kinase; phosp 94.3 0.029 9.9E-07 47.8 3.8 26 20-45 3-28 (192)
357 3u4q_A ATP-dependent helicase/ 94.3 0.047 1.6E-06 60.9 6.3 68 4-73 9-81 (1232)
358 2plr_A DTMP kinase, probable t 94.3 0.061 2.1E-06 46.6 5.9 28 19-46 3-30 (213)
359 3lw7_A Adenylate kinase relate 94.3 0.025 8.7E-07 47.3 3.2 20 21-40 2-21 (179)
360 2pez_A Bifunctional 3'-phospho 94.2 0.029 9.8E-07 47.5 3.5 27 19-45 4-30 (179)
361 3cr8_A Sulfate adenylyltranfer 94.2 0.025 8.7E-07 57.0 3.5 36 17-52 366-401 (552)
362 3umf_A Adenylate kinase; rossm 94.2 0.031 1.1E-06 49.0 3.6 29 16-44 25-53 (217)
363 3tlx_A Adenylate kinase 2; str 94.1 0.043 1.5E-06 49.1 4.6 27 18-44 27-53 (243)
364 3cmu_A Protein RECA, recombina 94.1 0.17 5.9E-06 58.1 10.3 93 16-127 1077-1169(2050)
365 3nwj_A ATSK2; P loop, shikimat 94.1 0.034 1.1E-06 50.0 3.8 26 20-45 48-73 (250)
366 3iij_A Coilin-interacting nucl 94.1 0.032 1.1E-06 47.2 3.5 27 18-44 9-35 (180)
367 1zd8_A GTP:AMP phosphotransfer 94.1 0.039 1.3E-06 48.7 4.2 27 18-44 5-31 (227)
368 1gvn_B Zeta; postsegregational 94.1 0.048 1.6E-06 50.1 4.9 25 20-44 33-57 (287)
369 3cf2_A TER ATPase, transitiona 94.1 0.1 3.5E-06 54.8 7.9 25 20-44 238-262 (806)
370 2qmh_A HPR kinase/phosphorylas 94.0 0.027 9.2E-07 48.3 2.9 25 19-43 33-57 (205)
371 2c95_A Adenylate kinase 1; tra 94.0 0.046 1.6E-06 46.8 4.5 28 17-44 6-33 (196)
372 1np6_A Molybdopterin-guanine d 94.0 0.048 1.6E-06 46.0 4.4 25 21-45 7-31 (174)
373 2bwj_A Adenylate kinase 5; pho 94.0 0.045 1.5E-06 47.0 4.4 31 14-44 6-36 (199)
374 1m7g_A Adenylylsulfate kinase; 94.0 0.022 7.4E-07 49.8 2.3 31 15-45 20-50 (211)
375 1t9h_A YLOQ, probable GTPase E 94.0 0.0081 2.8E-07 55.7 -0.5 31 16-46 169-199 (307)
376 1xjc_A MOBB protein homolog; s 94.0 0.051 1.7E-06 45.5 4.4 26 21-46 5-30 (169)
377 1y63_A LMAJ004144AAA protein; 94.0 0.041 1.4E-06 46.8 3.9 26 18-43 8-33 (184)
378 1qvr_A CLPB protein; coiled co 94.0 0.083 2.8E-06 56.6 7.2 26 21-46 589-614 (854)
379 3qf7_A RAD50; ABC-ATPase, ATPa 93.9 0.026 8.9E-07 53.9 2.9 25 17-42 21-45 (365)
380 3t61_A Gluconokinase; PSI-biol 93.9 0.033 1.1E-06 48.1 3.3 25 20-44 18-42 (202)
381 3bh0_A DNAB-like replicative h 93.9 0.043 1.5E-06 51.2 4.3 56 12-69 60-115 (315)
382 1svm_A Large T antigen; AAA+ f 93.9 0.038 1.3E-06 52.8 3.9 29 16-44 165-193 (377)
383 2z43_A DNA repair and recombin 93.8 0.055 1.9E-06 50.7 4.8 29 17-45 104-132 (324)
384 1ly1_A Polynucleotide kinase; 93.8 0.04 1.4E-06 46.4 3.5 22 21-42 3-24 (181)
385 2rhm_A Putative kinase; P-loop 93.8 0.034 1.2E-06 47.5 3.1 26 19-44 4-29 (193)
386 3foz_A TRNA delta(2)-isopenten 93.8 0.039 1.3E-06 50.8 3.6 24 21-44 11-34 (316)
387 4edh_A DTMP kinase, thymidylat 93.7 0.094 3.2E-06 45.8 5.8 41 18-58 4-44 (213)
388 2v54_A DTMP kinase, thymidylat 93.7 0.043 1.5E-06 47.4 3.6 26 19-44 3-28 (204)
389 1v5w_A DMC1, meiotic recombina 93.7 0.079 2.7E-06 50.1 5.7 28 17-44 119-146 (343)
390 4tmk_A Protein (thymidylate ki 93.7 0.1 3.5E-06 45.6 6.0 41 19-59 2-43 (213)
391 1qhl_A Protein (cell division 93.6 0.013 4.4E-07 51.8 0.1 31 22-52 29-59 (227)
392 2www_A Methylmalonic aciduria 93.6 0.097 3.3E-06 49.6 6.2 39 20-58 74-113 (349)
393 2if2_A Dephospho-COA kinase; a 93.6 0.046 1.6E-06 47.3 3.6 21 22-42 3-23 (204)
394 3qks_A DNA double-strand break 93.5 0.044 1.5E-06 47.5 3.4 25 20-44 23-47 (203)
395 2x8a_A Nuclear valosin-contain 93.5 0.046 1.6E-06 49.9 3.6 25 21-45 45-69 (274)
396 1odf_A YGR205W, hypothetical 3 93.5 0.042 1.4E-06 50.6 3.4 26 20-45 31-56 (290)
397 1nn5_A Similar to deoxythymidy 93.4 0.075 2.6E-06 46.2 4.8 40 18-57 7-46 (215)
398 1lv7_A FTSH; alpha/beta domain 93.4 0.075 2.6E-06 47.8 4.9 25 20-44 45-69 (257)
399 3d3q_A TRNA delta(2)-isopenten 93.4 0.051 1.7E-06 50.9 3.7 24 21-44 8-31 (340)
400 1jjv_A Dephospho-COA kinase; P 93.4 0.045 1.5E-06 47.4 3.2 21 22-42 4-24 (206)
401 1ixz_A ATP-dependent metallopr 93.3 0.048 1.6E-06 49.0 3.5 25 21-45 50-74 (254)
402 1gm5_A RECG; helicase, replica 93.3 0.059 2E-06 56.7 4.5 78 213-296 417-495 (780)
403 3crm_A TRNA delta(2)-isopenten 93.3 0.055 1.9E-06 50.4 3.8 24 21-44 6-29 (323)
404 1aky_A Adenylate kinase; ATP:A 93.3 0.064 2.2E-06 47.0 4.1 26 19-44 3-28 (220)
405 2z0h_A DTMP kinase, thymidylat 93.3 0.11 3.8E-06 44.4 5.6 23 22-44 2-24 (197)
406 1tev_A UMP-CMP kinase; ploop, 93.2 0.052 1.8E-06 46.3 3.4 25 20-44 3-27 (196)
407 2jaq_A Deoxyguanosine kinase; 93.2 0.058 2E-06 46.4 3.7 24 22-45 2-25 (205)
408 2r44_A Uncharacterized protein 93.2 0.069 2.3E-06 50.1 4.4 34 11-44 37-70 (331)
409 1zuh_A Shikimate kinase; alpha 93.2 0.068 2.3E-06 44.5 4.0 25 21-45 8-32 (168)
410 3cmw_A Protein RECA, recombina 93.2 0.29 9.9E-06 55.5 10.0 39 17-55 729-767 (1706)
411 3cf0_A Transitional endoplasmi 93.1 0.056 1.9E-06 50.1 3.6 27 18-44 47-73 (301)
412 3sr0_A Adenylate kinase; phosp 93.1 0.063 2.1E-06 46.6 3.6 23 22-44 2-24 (206)
413 1w1w_A Structural maintenance 93.1 0.061 2.1E-06 52.6 4.0 29 18-46 24-52 (430)
414 1via_A Shikimate kinase; struc 93.0 0.061 2.1E-06 45.2 3.5 23 22-44 6-28 (175)
415 1zak_A Adenylate kinase; ATP:A 93.0 0.059 2E-06 47.3 3.5 26 19-44 4-29 (222)
416 1nks_A Adenylate kinase; therm 93.0 0.06 2.1E-06 45.8 3.4 24 22-45 3-26 (194)
417 1tue_A Replication protein E1; 93.0 0.062 2.1E-06 46.3 3.3 26 18-43 56-81 (212)
418 2ius_A DNA translocase FTSK; n 92.9 0.11 3.8E-06 51.6 5.6 26 17-42 164-189 (512)
419 2wwf_A Thymidilate kinase, put 92.9 0.07 2.4E-06 46.3 3.8 28 18-45 8-35 (212)
420 3lv8_A DTMP kinase, thymidylat 92.9 0.15 5.2E-06 45.2 5.9 41 18-58 25-66 (236)
421 3fb4_A Adenylate kinase; psych 92.9 0.067 2.3E-06 46.6 3.6 23 22-44 2-24 (216)
422 3dl0_A Adenylate kinase; phosp 92.8 0.075 2.6E-06 46.4 3.9 23 22-44 2-24 (216)
423 1ofh_A ATP-dependent HSL prote 92.8 0.1 3.5E-06 48.2 5.1 25 20-44 50-74 (310)
424 1gtv_A TMK, thymidylate kinase 92.8 0.028 9.5E-07 49.0 1.0 24 22-45 2-25 (214)
425 2p67_A LAO/AO transport system 92.8 0.074 2.5E-06 50.2 4.0 35 18-52 54-88 (341)
426 1iy2_A ATP-dependent metallopr 92.8 0.065 2.2E-06 49.0 3.5 24 22-45 75-98 (278)
427 1e9r_A Conjugal transfer prote 92.8 0.062 2.1E-06 52.7 3.5 43 19-62 52-94 (437)
428 2cdn_A Adenylate kinase; phosp 92.7 0.09 3.1E-06 45.3 4.2 25 20-44 20-44 (201)
429 3hws_A ATP-dependent CLP prote 92.7 0.12 4.2E-06 49.2 5.5 26 19-44 50-75 (363)
430 1ny5_A Transcriptional regulat 92.7 0.72 2.5E-05 44.2 11.0 38 17-54 157-194 (387)
431 1pui_A ENGB, probable GTP-bind 92.6 0.032 1.1E-06 48.4 1.1 26 17-42 23-48 (210)
432 2vli_A Antibiotic resistance p 92.6 0.063 2.2E-06 45.3 3.0 27 19-45 4-30 (183)
433 3v9p_A DTMP kinase, thymidylat 92.6 0.11 3.7E-06 45.9 4.4 30 16-45 21-50 (227)
434 1oix_A RAS-related protein RAB 92.5 0.079 2.7E-06 45.2 3.5 23 22-44 31-53 (191)
435 1ukz_A Uridylate kinase; trans 92.4 0.09 3.1E-06 45.3 3.8 24 21-44 16-39 (203)
436 2o5v_A DNA replication and rep 92.3 0.065 2.2E-06 50.9 2.9 23 19-42 26-48 (359)
437 2f9l_A RAB11B, member RAS onco 92.3 0.084 2.9E-06 45.3 3.5 23 22-44 7-29 (199)
438 1e6c_A Shikimate kinase; phosp 92.3 0.087 3E-06 44.0 3.5 24 21-44 3-26 (173)
439 2p5t_B PEZT; postsegregational 92.3 0.057 2E-06 48.6 2.4 25 20-44 32-56 (253)
440 3be4_A Adenylate kinase; malar 92.2 0.11 3.7E-06 45.5 4.1 26 19-44 4-29 (217)
441 2iyv_A Shikimate kinase, SK; t 92.2 0.094 3.2E-06 44.4 3.6 24 21-44 3-26 (184)
442 3auy_A DNA double-strand break 92.2 0.077 2.6E-06 50.8 3.3 23 20-42 25-47 (371)
443 3eph_A TRNA isopentenyltransfe 92.2 0.08 2.7E-06 50.7 3.3 24 21-44 3-26 (409)
444 4hlc_A DTMP kinase, thymidylat 92.1 0.26 8.9E-06 42.6 6.3 39 20-59 2-40 (205)
445 1qf9_A UMP/CMP kinase, protein 92.1 0.095 3.2E-06 44.6 3.5 24 21-44 7-30 (194)
446 3cmw_A Protein RECA, recombina 92.1 0.42 1.4E-05 54.3 9.3 39 16-55 30-68 (1706)
447 1uf9_A TT1252 protein; P-loop, 92.0 0.089 3.1E-06 45.2 3.3 23 21-43 9-31 (203)
448 2pt5_A Shikimate kinase, SK; a 92.0 0.11 3.9E-06 43.0 3.8 23 22-44 2-24 (168)
449 1vht_A Dephospho-COA kinase; s 92.0 0.091 3.1E-06 45.9 3.3 23 20-42 4-26 (218)
450 1ak2_A Adenylate kinase isoenz 92.0 0.12 4E-06 45.8 4.0 26 19-44 15-40 (233)
451 3hjn_A DTMP kinase, thymidylat 92.0 0.22 7.4E-06 42.9 5.6 39 23-61 3-41 (197)
452 3nbx_X ATPase RAVA; AAA+ ATPas 91.9 0.12 4.3E-06 51.3 4.5 34 11-44 32-65 (500)
453 1e4v_A Adenylate kinase; trans 91.9 0.11 3.6E-06 45.4 3.6 23 22-44 2-24 (214)
454 3a4m_A L-seryl-tRNA(SEC) kinas 91.8 0.096 3.3E-06 47.3 3.3 24 20-43 4-27 (260)
455 2pbr_A DTMP kinase, thymidylat 91.7 0.23 7.9E-06 42.1 5.6 23 22-44 2-24 (195)
456 2xb4_A Adenylate kinase; ATP-b 91.7 0.11 3.9E-06 45.6 3.6 23 22-44 2-24 (223)
457 1f2t_B RAD50 ABC-ATPase; DNA d 91.7 0.28 9.5E-06 40.0 5.7 61 99-160 57-123 (148)
458 3r20_A Cytidylate kinase; stru 91.6 0.13 4.6E-06 45.4 4.0 26 19-44 8-33 (233)
459 1c9k_A COBU, adenosylcobinamid 91.4 0.11 3.7E-06 43.9 2.9 21 23-43 2-22 (180)
460 2i1q_A DNA repair and recombin 91.4 0.17 5.7E-06 47.3 4.6 27 17-43 95-121 (322)
461 3hgt_A HDA1 complex subunit 3; 91.4 1.1 3.8E-05 41.4 9.8 122 200-351 113-241 (328)
462 1q3t_A Cytidylate kinase; nucl 91.2 0.15 5.2E-06 45.2 3.9 28 17-44 13-40 (236)
463 2gj8_A MNME, tRNA modification 91.2 0.12 4E-06 43.3 3.0 25 19-43 3-27 (172)
464 3tmk_A Thymidylate kinase; pho 91.1 0.27 9.1E-06 42.9 5.3 36 19-57 4-39 (216)
465 3m6a_A ATP-dependent protease 90.9 0.14 4.9E-06 51.6 3.9 27 19-45 107-133 (543)
466 3t15_A Ribulose bisphosphate c 90.8 0.14 4.8E-06 47.1 3.4 24 21-44 37-60 (293)
467 2grj_A Dephospho-COA kinase; T 90.8 0.17 5.7E-06 43.4 3.6 23 21-43 13-35 (192)
468 3io5_A Recombination and repai 90.7 0.097 3.3E-06 48.4 2.1 40 17-57 26-66 (333)
469 2ga8_A Hypothetical 39.9 kDa p 90.7 0.29 1E-05 46.0 5.4 37 8-44 6-48 (359)
470 2wji_A Ferrous iron transport 90.5 0.17 5.7E-06 41.9 3.3 22 22-43 5-26 (165)
471 3cf2_A TER ATPase, transitiona 90.3 0.45 1.5E-05 50.0 7.0 24 21-44 512-535 (806)
472 2r62_A Cell division protease 90.3 0.11 3.8E-06 47.0 2.2 25 20-44 44-68 (268)
473 2dyk_A GTP-binding protein; GT 90.3 0.19 6.5E-06 41.0 3.5 22 22-43 3-24 (161)
474 2qnr_A Septin-2, protein NEDD5 90.3 0.12 4.3E-06 47.7 2.6 22 22-43 20-41 (301)
475 2ce2_X GTPase HRAS; signaling 90.2 0.19 6.5E-06 41.0 3.4 22 22-43 5-26 (166)
476 2qag_C Septin-7; cell cycle, c 90.1 0.16 5.6E-06 49.1 3.3 23 23-45 34-56 (418)
477 1z2a_A RAS-related protein RAB 90.1 0.2 6.8E-06 41.1 3.5 22 22-43 7-28 (168)
478 3lxx_A GTPase IMAP family memb 90.1 0.21 7.1E-06 44.3 3.8 24 22-45 31-54 (239)
479 2ged_A SR-beta, signal recogni 90.0 0.2 6.8E-06 42.5 3.5 23 22-44 50-72 (193)
480 3ake_A Cytidylate kinase; CMP 90.0 0.2 6.7E-06 43.2 3.5 23 22-44 4-26 (208)
481 1uj2_A Uridine-cytidine kinase 89.9 0.21 7.3E-06 44.7 3.7 24 22-45 24-47 (252)
482 1um8_A ATP-dependent CLP prote 89.8 0.21 7.1E-06 47.8 3.7 25 20-44 72-96 (376)
483 3pxg_A Negative regulator of g 89.8 0.33 1.1E-05 47.9 5.3 32 13-44 192-225 (468)
484 1z0j_A RAB-22, RAS-related pro 89.7 0.22 7.7E-06 40.9 3.5 23 22-44 8-30 (170)
485 2wjg_A FEOB, ferrous iron tran 89.7 0.2 6.8E-06 42.2 3.2 21 22-42 9-29 (188)
486 2vhj_A Ntpase P4, P4; non- hyd 89.6 0.16 5.6E-06 47.0 2.7 27 17-43 120-146 (331)
487 3dzd_A Transcriptional regulat 89.6 1.6 5.4E-05 41.5 9.8 30 16-45 148-177 (368)
488 3ice_A Transcription terminati 89.6 0.14 4.8E-06 48.6 2.2 32 13-44 167-198 (422)
489 1ltq_A Polynucleotide kinase; 89.5 0.2 7E-06 46.1 3.4 23 21-43 3-25 (301)
490 2ocp_A DGK, deoxyguanosine kin 89.5 0.22 7.7E-06 44.2 3.5 25 20-44 2-26 (241)
491 2c9o_A RUVB-like 1; hexameric 89.5 0.24 8.3E-06 48.7 4.1 33 13-45 52-88 (456)
492 1ek0_A Protein (GTP-binding pr 89.5 0.24 8.1E-06 40.7 3.5 23 22-44 5-27 (170)
493 1g16_A RAS-related protein SEC 89.5 0.23 7.9E-06 40.8 3.4 22 22-43 5-26 (170)
494 1ky3_A GTP-binding protein YPT 89.5 0.24 8.2E-06 41.3 3.5 22 22-43 10-31 (182)
495 1kao_A RAP2A; GTP-binding prot 89.5 0.24 8.3E-06 40.4 3.5 22 22-43 5-26 (167)
496 1u8z_A RAS-related protein RAL 89.3 0.25 8.5E-06 40.4 3.5 22 22-43 6-27 (168)
497 1ypw_A Transitional endoplasmi 89.2 0.25 8.7E-06 52.3 4.2 28 17-44 235-262 (806)
498 1wms_A RAB-9, RAB9, RAS-relate 89.2 0.26 8.9E-06 40.9 3.5 22 22-43 9-30 (177)
499 1svi_A GTP-binding protein YSX 89.1 0.22 7.4E-06 42.3 3.0 22 21-42 24-45 (195)
500 2eyq_A TRCF, transcription-rep 89.0 0.32 1.1E-05 53.7 5.0 79 212-296 651-730 (1151)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.1e-79 Score=643.44 Aligned_cols=461 Identities=48% Similarity=0.826 Sum_probs=425.7
Q ss_pred CCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCC--CcEEEEeCchhHHHHHHHHHHHHHhCCccCCe
Q 012322 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK--SGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (466)
Q Consensus 3 ~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~--~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 80 (466)
.+|++.++++|...+..+++++++|||||||||+++.++....... +..+++++|+++++.|+++++++.++..++..
T Consensus 92 ~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~ 171 (773)
T 2xau_A 92 ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEE 171 (773)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTT
T ss_pred cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhhe
Confidence 5899999999999999999999999999999999998877654433 56799999999999999999999999999999
Q ss_pred eeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
+|+...++.....+++|+++|+|++++.+..+..+.++++||+||+|+++++.+....+++.+...++ +.++++||||+
T Consensus 172 vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~ 250 (773)
T 2xau_A 172 VGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATL 250 (773)
T ss_dssp EEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCS
T ss_pred ecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccc
Confidence 99888777777778999999999999999988999999999999999889999998888998887775 89999999999
Q ss_pred ChhHHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhc
Q 012322 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~ 240 (466)
+.+.+.+|+++.+++.++++.++++..|......++....+..+..++....++++||||+++++++.+++.|.+....+
T Consensus 251 ~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l 330 (773)
T 2xau_A 251 DAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQL 330 (773)
T ss_dssp CCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 98999999999999999999999999999888888888888888888877778999999999999999999998743222
Q ss_pred c-CCCCCCeEEEeecCCCCHHHHhcccCCCC-----CCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccc
Q 012322 241 D-EGSCMDAVILPLHGSLPPEMQVRVFSPPP-----PNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYS 314 (466)
Q Consensus 241 ~-~~~~~~~~v~~~h~~l~~~~r~~~~~~f~-----~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~ 314 (466)
. .....++.+.++||+|++++|.++++.|+ +|.++|||||+++|+|||+|+|++|||+|+++...||+..|+..
T Consensus 331 ~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~ 410 (773)
T 2xau_A 331 VREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVES 410 (773)
T ss_dssp HHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEE
T ss_pred cccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccc
Confidence 0 00113788999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cceeeecHHHHHHhccccCCCCCCeEEEecCccchhhhCCCCCCCccccCCchHHHHHHHhCCCCCCccccccCCCCCCH
Q 012322 315 LDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSS 394 (466)
Q Consensus 315 ~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~ 394 (466)
+...|+|.++|+||+|||||.++|.||+||+++++...+.++..|||.+.+|..++|+++.+|+.+ +..|+|++||+.
T Consensus 411 L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~--~~~f~~~~~p~~ 488 (773)
T 2xau_A 411 LLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDD--LVHFDFMDPPAP 488 (773)
T ss_dssp EEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCC--GGGCCCSSCCCH
T ss_pred cccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCC--hhhccccCCCcH
Confidence 999999999999999999999999999999999996559999999999999999999999999988 888999999999
Q ss_pred HHHHHHHHHHHHcccccCCCCCCHHHHHHccCCCCHHHHHHHHHhhhhCCHHHHHHHhhhhcCCCcccCCCC
Q 012322 395 ESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRS 466 (466)
Q Consensus 395 ~~~~~~l~~L~~~~~l~~~~~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~f~~~~~ 466 (466)
+.+..+++.|.++|+||++|++|++|+.|+.+|++|++|+|++.+..++|++++++|+|+|+++++|..|++
T Consensus 489 ~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~ 560 (773)
T 2xau_A 489 ETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTK 560 (773)
T ss_dssp HHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTT
T ss_pred HHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.5e-56 Score=471.05 Aligned_cols=446 Identities=17% Similarity=0.148 Sum_probs=322.3
Q ss_pred CchHhHHHHHHH-HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHH--HhCCccCCee
Q 012322 5 PILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ--ELGVRLGEEV 81 (466)
Q Consensus 5 pi~~~q~~i~~~-i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~--~~~~~~~~~~ 81 (466)
..+++|.++++. +.++++++++||||||||++++..+.......+.++++++|+++++.|+++++.. ..+..++..+
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~ 109 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTS 109 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 468899999998 8899999999999999998877666543332467999999999999999998832 2355555555
Q ss_pred eeeEeeccccCccceEEEcCHHHHHHHHhhCCC-CCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPD-LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~-l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
|+....+.. ..+++|+++|||.+.+.+..++. +.++++||+||+|+. .+.. ....++.++...+ +.++|+||||+
T Consensus 110 G~~~~~~~~-~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l-~~~~-~~~~l~~i~~~~~-~~~ii~lSATl 185 (715)
T 2va8_A 110 GDYDTDDAW-LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYL-NDPE-RGPVVESVTIRAK-RRNLLALSATI 185 (715)
T ss_dssp SCSSSCCGG-GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGG-GCTT-THHHHHHHHHHHH-TSEEEEEESCC
T ss_pred CCCCCchhh-cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhc-CCcc-cchHHHHHHHhcc-cCcEEEEcCCC
Confidence 544333322 24789999999999998887764 889999999999963 2222 2233555555555 89999999999
Q ss_pred C-hhHHHhhcCCCCeEeeCCCcCceeeeecCCC--------------CCch--HHHHHHHHHHHhhcCCCCCEEEecCCH
Q 012322 161 D-GEKVSKFFSNCPTLNVPGKLYPVEILHSKER--------------PTSY--LESALKTAIDIHVREPEGDVLIFMTGQ 223 (466)
Q Consensus 161 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~~~~lVF~~t~ 223 (466)
+ .+.+.+|++ .+.+....+.+++...+.... .... .......+...+ ..++++||||+|+
T Consensus 186 ~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~ 262 (715)
T 2va8_A 186 SNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSR 262 (715)
T ss_dssp TTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSH
T ss_pred CCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCH
Confidence 5 678999995 556677777777654331100 0000 122333333333 3568999999999
Q ss_pred HHHHHHHHHHHHhhhh--cc-----------C---C----------CCCCeEEEeecCCCCHHHHhcccCCCCCCcceEE
Q 012322 224 DDIEKLVSKLEDKIRS--LD-----------E---G----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFI 277 (466)
Q Consensus 224 ~~~~~l~~~L~~~~~~--~~-----------~---~----------~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~il 277 (466)
++++.++..|.+.... .. . . .....++.+|||+|+.++|..+++.|++|.++||
T Consensus 263 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vl 342 (715)
T 2va8_A 263 KMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVI 342 (715)
T ss_dssp HHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEE
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEE
Confidence 9999999999875321 00 0 0 0001348889999999999999999999999999
Q ss_pred EEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC---CCeEEEecCccch-hhhC
Q 012322 278 VSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVY-HDEF 353 (466)
Q Consensus 278 vaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~-~~~~ 353 (466)
|||+++++|||+|++++||+. ...||+..+.. ..|.|.++|+||+|||||.+ +|.||+++++.+. ...+
T Consensus 343 vaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~ 415 (715)
T 2va8_A 343 VATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVF 415 (715)
T ss_dssp EECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHH
T ss_pred EEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHH
Confidence 999999999999999999985 34566544332 46889999999999999986 8999999988762 2211
Q ss_pred --CCCCCCccccCCchH------HHHHHHhCCCC-C-Cccc---cccCCC-CCCHHHHHHHHHHHHHcccccCCC---CC
Q 012322 354 --LDVTVPEIQRSSLAG------SVLYLKSLDLS-D-INVL---KFDFLD-PPSSESLEDALKQLYLIDAIDENG---SI 416 (466)
Q Consensus 354 --~~~~~p~i~~~~l~~------~~l~l~~~~~~-~-~~~~---~~~~~~-~p~~~~~~~~l~~L~~~~~l~~~~---~~ 416 (466)
.....|++.++++.. .++.+...|.. + .++. ...|+. +|+...+..+++.|.+.|+|+.++ .+
T Consensus 416 ~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~ 495 (715)
T 2va8_A 416 KKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFAL 495 (715)
T ss_dssp HHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred HHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEee
Confidence 123567888777654 56666666632 1 0011 113443 445667999999999999998764 89
Q ss_pred CHHHHHHccCCCCHHHHHHHHHhhhh---CCHHHHHHHhhhhc-CCCcccCC
Q 012322 417 TSIGRTMAELPLEPSLSRMLMEANEF---GCLSQALTVAAMLS-AETTLLPG 464 (466)
Q Consensus 417 T~lG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~-~~~~f~~~ 464 (466)
|++|+.++.+|++|.++++++.+... .|..+++.++|+.+ ++++|.++
T Consensus 496 t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~ 547 (715)
T 2va8_A 496 TNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGR 547 (715)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCH
T ss_pred ChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccCh
Confidence 99999999999999999999999988 89999999887766 67787765
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=9.8e-55 Score=460.02 Aligned_cols=444 Identities=17% Similarity=0.136 Sum_probs=328.8
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHH--HhCCccCCeee
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ--ELGVRLGEEVG 82 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~--~~~~~~~~~~g 82 (466)
..+++|.++++.+.++++++++||||||||+++...+..... .+.++++++|+++++.|+++++.+ ..+..++..+|
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 457889999999999999999999999999777655553322 356899999999999999998832 23445555555
Q ss_pred eeEeeccccCccceEEEcCHHHHHHHHhhCCC-CCCCcEEEecCCCcccc--CHHHHHHHHHHHHHhhhcCceEEEEecc
Q 012322 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPD-LSPYSVIILDEAHERSL--NTDILLGLVKRLVNLRASKLKILITSAT 159 (466)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~-l~~~~~iIiDEah~~~~--~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (466)
+....+. ....++|+++|||++.+.+..+.. +.++++||+||+|+..- ....+..++..+.... ++.++|+||||
T Consensus 104 ~~~~~~~-~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~-~~~~ii~lSAT 181 (702)
T 2p6r_A 104 DYESRDE-HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-KALRVIGLSAT 181 (702)
T ss_dssp SCBCCSS-CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC-TTCEEEEEECC
T ss_pred CCCcchh-hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC-cCceEEEECCC
Confidence 4433332 234789999999999998877664 88999999999996221 2222333334443333 48999999999
Q ss_pred cC-hhHHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHH---------HHHHHHHHHhhcCCCCCEEEecCCHHHHHHH
Q 012322 160 LD-GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLE---------SALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (466)
Q Consensus 160 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l 229 (466)
++ .+.+.+|++ .+.+....+.+|+...+.......+.. .....+.... .+++++||||+|+++++.+
T Consensus 182 l~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~ 258 (702)
T 2p6r_A 182 APNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRGAEKT 258 (702)
T ss_dssp CTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHHHHHH
T ss_pred cCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHH--hcCCCEEEEcCCHHHHHHH
Confidence 96 678999996 667777888888776543221111100 0222223322 2468999999999999999
Q ss_pred HHHHHHhhhhccCCC--------------------CCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEeccccccccc
Q 012322 230 VSKLEDKIRSLDEGS--------------------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (466)
Q Consensus 230 ~~~L~~~~~~~~~~~--------------------~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi 289 (466)
+..|.+......... ..+.++.+|||+|++++|..+++.|++|+++|||||+++++|||+
T Consensus 259 a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidi 338 (702)
T 2p6r_A 259 AVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL 338 (702)
T ss_dssp HHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCC
T ss_pred HHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCC
Confidence 999987532210000 001347789999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC---CCeEEEecCccchhhhCC--CCCCCccccC
Q 012322 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHDEFL--DVTVPEIQRS 364 (466)
Q Consensus 290 p~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~~~~--~~~~p~i~~~ 364 (466)
|++++||+. ...|| |. ..|.|.++|+||+|||||.+ +|.||.++++.++...+. ....|++.++
T Consensus 339 p~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s 407 (702)
T 2p6r_A 339 PARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITS 407 (702)
T ss_dssp CBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCC
T ss_pred CceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcee
Confidence 999999984 34555 11 46889999999999999986 899999999988654221 2456788887
Q ss_pred CchH------HHHHHHhCCCC-CC-cccc---ccCC----CCCCHHHHHHHHHHHHHcccccCC--CCCCHHHHHHccCC
Q 012322 365 SLAG------SVLYLKSLDLS-DI-NVLK---FDFL----DPPSSESLEDALKQLYLIDAIDEN--GSITSIGRTMAELP 427 (466)
Q Consensus 365 ~l~~------~~l~l~~~~~~-~~-~~~~---~~~~----~~p~~~~~~~~l~~L~~~~~l~~~--~~~T~lG~~~~~~~ 427 (466)
++.. .++.+...|.. +. ++.. ..|+ ++|..+.+..+++.|.+.|+|+.+ +++|++|+.++.+|
T Consensus 408 ~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~ 487 (702)
T 2p6r_A 408 KLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLY 487 (702)
T ss_dssp CCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTT
T ss_pred ecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHh
Confidence 7654 55666666632 10 0111 1222 368889999999999999999877 78999999999999
Q ss_pred CCHHHHHHHHHhhhh--CCHHHHHHHhhhhc-CCCcccCCC
Q 012322 428 LEPSLSRMLMEANEF--GCLSQALTVAAMLS-AETTLLPGR 465 (466)
Q Consensus 428 ~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~-~~~~f~~~~ 465 (466)
++|.++++++.+... .|..+++.++|+.+ .++.|+++.
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~ 528 (702)
T 2p6r_A 488 IDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKT 528 (702)
T ss_dssp CCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTT
T ss_pred CCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCc
Confidence 999999999999998 89999999888766 466777764
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=6.3e-53 Score=447.40 Aligned_cols=444 Identities=15% Similarity=0.132 Sum_probs=313.9
Q ss_pred CchHhHHHHHHH-HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHH--HhCCccCCee
Q 012322 5 PILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ--ELGVRLGEEV 81 (466)
Q Consensus 5 pi~~~q~~i~~~-i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~--~~~~~~~~~~ 81 (466)
..+++|.++++. +.++++++++||||||||+++...+.......+.++++++|+++++.|+++++.+ .++..++...
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~ 102 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMAT 102 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEEC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEec
Confidence 568899999998 8999999999999999997665444433222367999999999999999999852 2344544444
Q ss_pred eeeEeeccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
|. ...+.....+++|+++|||.+...+.... .+.++++||+||+|+ ..+.+... .+..++...+.+.++|+||||+
T Consensus 103 G~-~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~-l~~~~r~~-~~~~ll~~l~~~~~ii~lSATl 179 (720)
T 2zj8_A 103 GD-YDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL-IGSRDRGA-TLEVILAHMLGKAQIIGLSATI 179 (720)
T ss_dssp SC-SSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG-GGCTTTHH-HHHHHHHHHBTTBEEEEEECCC
T ss_pred CC-CCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc-cCCCcccH-HHHHHHHHhhcCCeEEEEcCCc
Confidence 41 22222223478999999999999887766 488999999999994 32222211 2333333333379999999999
Q ss_pred -ChhHHHhhcCCCCeEeeCCCcCceeeeecCCCCCch-------HHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHH
Q 012322 161 -DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSY-------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (466)
Q Consensus 161 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~ 232 (466)
+.+.+.+|++ ...+....++.++...+.......+ .......+...+ .+++++||||+|+++++.++..
T Consensus 180 ~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~ 256 (720)
T 2zj8_A 180 GNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI--RKKKGALIFVNMRRKAERVALE 256 (720)
T ss_dssp SCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH--HTTCCEEEECSCHHHHHHHHHH
T ss_pred CCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHH--hCCCCEEEEecCHHHHHHHHHH
Confidence 5678999985 4455566666666543221110000 011122222222 2458999999999999999999
Q ss_pred HHHhhhhccC------------C-----------CCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEeccccccccc
Q 012322 233 LEDKIRSLDE------------G-----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (466)
Q Consensus 233 L~~~~~~~~~------------~-----------~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi 289 (466)
|.+....... . .....++.+|||+|++++|..+++.|++|.++|||||+++++|||+
T Consensus 257 L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdi 336 (720)
T 2zj8_A 257 LSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINT 336 (720)
T ss_dssp HHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCC
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCC
Confidence 9875322000 0 0001248899999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC---CCeEEEecCccchhh---hCCCCCCCcccc
Q 012322 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD---EFLDVTVPEIQR 363 (466)
Q Consensus 290 p~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~---~~~~~~~p~i~~ 363 (466)
|++++||+.+ ..|| ..| ..|.|..+|+||+|||||.+ +|.||.++++.+... .+.....+++..
T Consensus 337 p~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s 406 (720)
T 2zj8_A 337 PAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFS 406 (720)
T ss_dssp CBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCC
T ss_pred CceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEe
Confidence 9999999833 3344 222 25789999999999999985 799999999887432 123333333332
Q ss_pred C-----CchHHHHHHHhCCCCCC-----ccccccCC------CCCCHHHHHHHHHHHHHccccc-CCC---CCCHHHHHH
Q 012322 364 S-----SLAGSVLYLKSLDLSDI-----NVLKFDFL------DPPSSESLEDALKQLYLIDAID-ENG---SITSIGRTM 423 (466)
Q Consensus 364 ~-----~l~~~~l~l~~~~~~~~-----~~~~~~~~------~~p~~~~~~~~l~~L~~~~~l~-~~~---~~T~lG~~~ 423 (466)
. .+...++.....+.... +.....|+ +++..+.+..+++.|.+.|+|+ .++ .+|++|+.+
T Consensus 407 ~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~ 486 (720)
T 2zj8_A 407 QLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRT 486 (720)
T ss_dssp CTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHH
T ss_pred ecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHH
Confidence 2 24445555555553210 01111232 2333577999999999999998 655 799999999
Q ss_pred ccCCCCHHHHHHHHHhhhh----CCHHHHHHHhhhhcC-CCcccCC
Q 012322 424 AELPLEPSLSRMLMEANEF----GCLSQALTVAAMLSA-ETTLLPG 464 (466)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~-~~~f~~~ 464 (466)
+.+|++|.++++++.+... .|..+++.|+|+.+. ++.|+++
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~ 532 (720)
T 2zj8_A 487 AKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSK 532 (720)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCH
T ss_pred HHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCH
Confidence 9999999999999999887 899999999999884 7777765
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.5e-42 Score=387.26 Aligned_cols=439 Identities=15% Similarity=0.097 Sum_probs=292.4
Q ss_pred hHhHHHHHHHH-hcCCEEEEEcCCCCcHHHHHHHHHHhc-CcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeee
Q 012322 7 LQYEETIVETV-EQNPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (466)
Q Consensus 7 ~~~q~~i~~~i-~~~~~~ii~apTGsGKTt~~~~~~~~~-~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~ 84 (466)
.+.|.+++..+ ..+++++++||||||||+.+...+... ...++.+++++.|+++++.|.++.+.+.++...+..++..
T Consensus 928 npiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~l 1007 (1724)
T 4f92_B 928 NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLL 1007 (1724)
T ss_dssp CHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEEC
T ss_pred CHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEE
Confidence 45688888887 567889999999999996554444322 2234668999999999999999999887766555555432
Q ss_pred Eee---ccccCccceEEEcCHHHHHHHHhhC---CCCCCCcEEEecCCCccccCHH-HHHHHH---HHHHHhhhcCceEE
Q 012322 85 IRF---EDRTSERTLIKYLTDGVLLREILSN---PDLSPYSVIILDEAHERSLNTD-ILLGLV---KRLVNLRASKLKIL 154 (466)
Q Consensus 85 ~~~---~~~~~~~~~i~~~T~g~l~~~~~~~---~~l~~~~~iIiDEah~~~~~~~-~~~~~l---~~i~~~~~~~~~ii 154 (466)
... +.....+.+|+++|||.+..++... ..+++++++|+||+|...-..+ .+..++ +.+....+.+.|+|
T Consensus 1008 tGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI 1087 (1724)
T 4f92_B 1008 TGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIV 1087 (1724)
T ss_dssp CSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEE
T ss_pred ECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEE
Confidence 221 1122346899999999987666432 2578899999999995322222 223333 33334445689999
Q ss_pred EEeccc-ChhHHHhhcCCC--CeEeeCC--CcCceeeeecCCCCCchHHH---HHHHHHH-HhhcCCCCCEEEecCCHHH
Q 012322 155 ITSATL-DGEKVSKFFSNC--PTLNVPG--KLYPVEILHSKERPTSYLES---ALKTAID-IHVREPEGDVLIFMTGQDD 225 (466)
Q Consensus 155 ~~SAT~-~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~lVF~~t~~~ 225 (466)
+||||+ |.+.+++|++.. ..+.+.. ++.|.+.+............ ....+.. +....+.+++||||+|++.
T Consensus 1088 ~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~ 1167 (1724)
T 4f92_B 1088 ALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQ 1167 (1724)
T ss_dssp EEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHH
T ss_pred EEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHH
Confidence 999999 668899999743 3344433 44555544333222222111 1111211 1223456799999999999
Q ss_pred HHHHHHHHHHhhhhccCC------------------------CCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEec
Q 012322 226 IEKLVSKLEDKIRSLDEG------------------------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN 281 (466)
Q Consensus 226 ~~~l~~~L~~~~~~~~~~------------------------~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~ 281 (466)
|+.++..|.......... .+...+|++|||||++++|..+++.|++|.++|||||+
T Consensus 1168 ~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~ 1247 (1724)
T 4f92_B 1168 TRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASR 1247 (1724)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEG
T ss_pred HHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEECh
Confidence 999998886654321100 00134588999999999999999999999999999999
Q ss_pred ccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC---CCeEEEecCccchhhhCCCCCC
Q 012322 282 IAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHDEFLDVTV 358 (466)
Q Consensus 282 ~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~~~~~~~~ 358 (466)
++++|||+|++++||.. ...||.... ...+.+..+|+||+|||||.+ .|.|+.++.+.+...+..-...
T Consensus 1248 tlA~GVnlPa~~VVI~~----~~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~ 1319 (1724)
T 4f92_B 1248 SLCWGMNVAAHLVIIMD----TQYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYE 1319 (1724)
T ss_dssp GGSSSCCCCBSEEEEEC----SEEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTS
T ss_pred HHHcCCCCCccEEEEec----CccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCC
Confidence 99999999999999973 334655432 235779999999999999983 7999999876654331111112
Q ss_pred Ccccc----CCchHHHHHHHhCCCCCCccccccC------------------C--------CCCCHHHHHHHHHHHHHcc
Q 012322 359 PEIQR----SSLAGSVLYLKSLDLSDINVLKFDF------------------L--------DPPSSESLEDALKQLYLID 408 (466)
Q Consensus 359 p~i~~----~~l~~~~l~l~~~~~~~~~~~~~~~------------------~--------~~p~~~~~~~~l~~L~~~~ 408 (466)
|+..+ ..+...++.....+.-.......+| + +....+.++++++.|++.|
T Consensus 1320 ~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~ 1399 (1724)
T 4f92_B 1320 PLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK 1399 (1724)
T ss_dssp CBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCC
Confidence 22223 3344455544444432100000011 0 1122355678999999999
Q ss_pred ccc--CCC--CCCHHHHHHccCCCCHHHHHHHHHhhhhCC-HHHHHHHhh
Q 012322 409 AID--ENG--SITSIGRTMAELPLEPSLSRMLMEANEFGC-LSQALTVAA 453 (466)
Q Consensus 409 ~l~--~~~--~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 453 (466)
+|+ +++ .+|++|++++.++++|..++++..+....+ +.+++-+.|
T Consensus 1400 ~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~ 1449 (1724)
T 4f92_B 1400 CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIIS 1449 (1724)
T ss_dssp SEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhc
Confidence 995 333 579999999999999999999998877665 445555443
No 6
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5.2e-42 Score=341.03 Aligned_cols=318 Identities=16% Similarity=0.167 Sum_probs=232.3
Q ss_pred CchHhHHHHHHHHhcC--CEEEEEcCCCCcHHHHH-HHHHHhcC-cCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCe
Q 012322 5 PILQYEETIVETVEQN--PVVVVIGETGSGKSTQL-SQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~--~~~ii~apTGsGKTt~~-~~~~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 80 (466)
..+++|.++++.+.++ ++++++||||||||..+ ..++.... ...+.+++++.|+++++.|+++.+.+.........
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 126 (412)
T 3fht_A 47 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK 126 (412)
T ss_dssp SCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccce
Confidence 3577899999999887 89999999999999443 33333332 23445899999999999999988877654333333
Q ss_pred eeeeEee---ccccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 81 VGYAIRF---EDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 81 ~g~~~~~---~~~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
+++.... ........+|+++||+.+.+.+.... .+.++++||+||+|. ..+.......+..+....+.+.++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~-~~~~~~~~~~~~~~~~~~~~~~~~i~ 205 (412)
T 3fht_A 127 LAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV-MIATQGHQDQSIRIQRMLPRNCQMLL 205 (412)
T ss_dssp EEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHH-HHSTTTTHHHHHHHHHTSCTTCEEEE
T ss_pred EEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHH-HhhcCCcHHHHHHHHhhCCCCceEEE
Confidence 3332221 22223457899999999999886533 468899999999994 33322222334556666666889999
Q ss_pred EecccChhH---HHhhcCCCCeEeeCCCcC---ceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHH
Q 012322 156 TSATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (466)
Q Consensus 156 ~SAT~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l 229 (466)
+|||++... ...++.+...+....... .+...+..... .......+.........+++||||+++++++.+
T Consensus 206 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 282 (412)
T 3fht_A 206 FSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS---RDEKFQALCNLYGAITIAQAMIFCHTRKTASWL 282 (412)
T ss_dssp EESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSS---HHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHH
T ss_pred EEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCC---hHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHH
Confidence 999998743 445665555554443221 22222222221 223344444444444567999999999999999
Q ss_pred HHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCC
Q 012322 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (466)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~ 309 (466)
++.|.+. +..+..+||+|+.++|.++++.|++|+.+|||||+++++|+|+|++++||++|.|....+
T Consensus 283 ~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~--- 349 (412)
T 3fht_A 283 AAELSKE----------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG--- 349 (412)
T ss_dssp HHHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSS---
T ss_pred HHHHHhC----------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCC---
Confidence 9999886 677899999999999999999999999999999999999999999999999998764321
Q ss_pred CCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 310 ~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
+.|..+|+||+||+||. .+|.|+.+++..+
T Consensus 350 ---------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 350 ---------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp ---------SBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred ---------CcchheeecccCcccCCCCCceEEEEEcChh
Confidence 24788999999999998 6799999998765
No 7
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.7e-42 Score=389.86 Aligned_cols=439 Identities=16% Similarity=0.147 Sum_probs=287.4
Q ss_pred hHhHHHHHHH-HhcCCEEEEEcCCCCcHHHHHHHHHH-hcC---------cCCCcEEEEeCchhHHHHHHHHHHHHHhC-
Q 012322 7 LQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILH-RHG---------YTKSGIIGVTQPRRVAAVSVARRVAQELG- 74 (466)
Q Consensus 7 ~~~q~~i~~~-i~~~~~~ii~apTGsGKTt~~~~~~~-~~~---------~~~~~~i~~~~p~~~l~~~~~~~~~~~~~- 74 (466)
+..|.++++. +..+++++++||||||||..+...+. ... ...+.+++++.|+++++.|+++.+.+.++
T Consensus 81 n~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~ 160 (1724)
T 4f92_B 81 NRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLAT 160 (1724)
T ss_dssp CHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 3578887775 56789999999999999944333222 211 12356899999999999999999877654
Q ss_pred --CccCCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCC---CCCCCcEEEecCCCccccCHHH-HHHHHHHH---HH
Q 012322 75 --VRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDI-LLGLVKRL---VN 145 (466)
Q Consensus 75 --~~~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~---~l~~~~~iIiDEah~~~~~~~~-~~~~l~~i---~~ 145 (466)
..++...|.. .........++|+++|||.+..++.+.. .+.++++|||||+|.-.-+.+. +...+.++ ..
T Consensus 161 ~gi~V~~~tGd~-~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~ 239 (1724)
T 4f92_B 161 YGITVAELTGDH-QLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIE 239 (1724)
T ss_dssp TTCCEEECCSSC-SSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCC-CCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHH
Confidence 3443333321 1122223568999999999755443332 4788999999999963223333 33333333 23
Q ss_pred hhhcCceEEEEeccc-ChhHHHhhcCCCC---eEeeCC--CcCceeeeecCCCCCchH---HHHHHHHHHHh-hcCCCCC
Q 012322 146 LRASKLKILITSATL-DGEKVSKFFSNCP---TLNVPG--KLYPVEILHSKERPTSYL---ESALKTAIDIH-VREPEGD 215 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~-~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~ 215 (466)
..+.+.|+|++|||+ |.+.+++|++..+ ...+.. |+.|++..+......... ......+.... ....+++
T Consensus 240 ~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 319 (1724)
T 4f92_B 240 MTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ 319 (1724)
T ss_dssp HHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred hCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCc
Confidence 344589999999999 5678999997532 233333 445555444322222221 11112222222 2234579
Q ss_pred EEEecCCHHHHHHHHHHHHHhhhhccCC---------------------------CCCCeEEEeecCCCCHHHHhcccCC
Q 012322 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEG---------------------------SCMDAVILPLHGSLPPEMQVRVFSP 268 (466)
Q Consensus 216 ~lVF~~t~~~~~~l~~~L~~~~~~~~~~---------------------------~~~~~~v~~~h~~l~~~~r~~~~~~ 268 (466)
+||||+||++|+.+++.|.+........ .+...++++|||||++++|..+++.
T Consensus 320 ~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~ 399 (1724)
T 4f92_B 320 VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDL 399 (1724)
T ss_dssp EEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHH
Confidence 9999999999999999997754321100 0123458899999999999999999
Q ss_pred CCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC---CCCeEEEecC
Q 012322 269 PPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYP 345 (466)
Q Consensus 269 f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~---~~G~~~~l~~ 345 (466)
|++|.++|||||+++++|||+|++++||. ....||+..|. ..+.|..+|+||+|||||. ..|.++.+.+
T Consensus 400 F~~G~i~vlvaTsTLa~GVNlPa~~vVI~----~~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~ 471 (1724)
T 4f92_B 400 FADKHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILITS 471 (1724)
T ss_dssp HHTTCCCEEEECHHHHHHSCCCBSEEEEE----CCEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEE
T ss_pred HHCCCCeEEEEcchhHhhCCCCCceEEEe----CCEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEEEec
Confidence 99999999999999999999999999996 34567776653 2577999999999999997 4799999987
Q ss_pred ccchhhh--CCCCCCC--ccccCCchHHHHHHHhCCCCCCc---------------------cccc--------cCCCCC
Q 012322 346 STVYHDE--FLDVTVP--EIQRSSLAGSVLYLKSLDLSDIN---------------------VLKF--------DFLDPP 392 (466)
Q Consensus 346 ~~~~~~~--~~~~~~p--~i~~~~l~~~~l~l~~~~~~~~~---------------------~~~~--------~~~~~p 392 (466)
+.+...+ +.....| .-....+.+.+.+...+|.-... ...+ +.++..
T Consensus 472 ~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~ 551 (1724)
T 4f92_B 472 HGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQR 551 (1724)
T ss_dssp STTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHH
T ss_pred chhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHH
Confidence 7654332 1111111 11122333444333333321100 0000 011111
Q ss_pred CHHHHHHHHHHHHHcccccC---CC--CCCHHHHHHccCCCCHHHHHHHHHhhhhCC-HHHHHHHhhh
Q 012322 393 SSESLEDALKQLYLIDAIDE---NG--SITSIGRTMAELPLEPSLSRMLMEANEFGC-LSQALTVAAM 454 (466)
Q Consensus 393 ~~~~~~~~l~~L~~~~~l~~---~~--~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~ 454 (466)
..+.+..++..|.+.|+|.. +| .+|++|++++++++++..++.+.......+ ..+++.+.|.
T Consensus 552 ~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~ 619 (1724)
T 4f92_B 552 RLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL 619 (1724)
T ss_dssp HHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhC
Confidence 23446789999999999942 23 689999999999999999999998876554 4455555554
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1e-41 Score=336.89 Aligned_cols=318 Identities=17% Similarity=0.198 Sum_probs=232.0
Q ss_pred CchHhHHHHHHHHhcC--CEEEEEcCCCCcHHHHHH-HHHHhcC-cCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCe
Q 012322 5 PILQYEETIVETVEQN--PVVVVIGETGSGKSTQLS-QILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~--~~~ii~apTGsGKTt~~~-~~~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 80 (466)
..+++|.++++.+.++ +++++++|||||||..+. .++.... ...+.+++++.|+++++.|+++.+.+..... +..
T Consensus 27 ~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~ 105 (395)
T 3pey_A 27 KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFT-KIT 105 (395)
T ss_dssp SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhccc-Cee
Confidence 4578999999999988 899999999999995443 3333322 2245689999999999999999887654322 122
Q ss_pred eeeeE--eeccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 81 VGYAI--RFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 81 ~g~~~--~~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
++... ........+.+|+++||+.+.+.+.... .+.++++||+||+|....+.++ ...+..+....+.+.+++++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~-~~~~~~~~~~~~~~~~~i~~S 184 (395)
T 3pey_A 106 SQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGL-GDQCIRVKRFLPKDTQLVLFS 184 (395)
T ss_dssp EEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTH-HHHHHHHHHTSCTTCEEEEEE
T ss_pred EEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCcccc-HHHHHHHHHhCCCCcEEEEEE
Confidence 22111 1122233468999999999998886554 6889999999999942222333 333556666666689999999
Q ss_pred cccChhH---HHhhcCCCCeEeeCCCcCc---eeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHH
Q 012322 158 ATLDGEK---VSKFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (466)
Q Consensus 158 AT~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~ 231 (466)
||++... ...++.+...+........ +...+.... ........+.........+++||||+++++++.+++
T Consensus 185 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~ 261 (395)
T 3pey_A 185 ATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCK---NEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYG 261 (395)
T ss_dssp SCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECS---SHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcC---chHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHH
Confidence 9997642 3455555544444332222 222222211 122334444445555567899999999999999999
Q ss_pred HHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCC
Q 012322 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (466)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~ 311 (466)
.|++. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|..
T Consensus 262 ~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~-------- 323 (395)
T 3pey_A 262 KLKSE----------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTL-------- 323 (395)
T ss_dssp HHHHT----------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBC--------
T ss_pred HHHhc----------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCC--------
Confidence 99876 677899999999999999999999999999999999999999999999999887751
Q ss_pred ccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 312 ~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
...+.|..+|+||+||+||. .+|.|+.++++.+.
T Consensus 324 ----~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 324 ----ANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp ----TTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred ----CcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 22356889999999999999 67999999986544
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-41 Score=340.03 Aligned_cols=307 Identities=17% Similarity=0.214 Sum_probs=226.1
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHH-HHHHHHHhc-C-----cCCCcEEEEeCchhHHHHHHHHHHHHHhC---C
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRH-G-----YTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt-~~~~~~~~~-~-----~~~~~~i~~~~p~~~l~~~~~~~~~~~~~---~ 75 (466)
.+++|.+.+..+.+|++++++||||||||. ++.+++... . ...+.+++++.|+++++.|+++.+.+... .
T Consensus 79 pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 158 (434)
T 2db3_A 79 PTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYL 158 (434)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCc
Confidence 467899999999999999999999999993 333333222 1 12355899999999999999998866543 2
Q ss_pred ccCCeeeeeEee--ccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh--hcC
Q 012322 76 RLGEEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR--ASK 150 (466)
Q Consensus 76 ~~~~~~g~~~~~--~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~--~~~ 150 (466)
.+....|..... .......++|+++|||++.+.+.... .+.+++++|+|||| +..+.++... +..+.... +.+
T Consensus 159 ~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~~~-~~~i~~~~~~~~~ 236 (434)
T 2db3_A 159 KIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-RMLDMGFSED-MRRIMTHVTMRPE 236 (434)
T ss_dssp CCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH-HHTSTTTHHH-HHHHHHCTTSCSS
T ss_pred EEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh-hhhccCcHHH-HHHHHHhcCCCCC
Confidence 333223211110 11123468999999999998886554 68899999999999 6777665555 55555542 347
Q ss_pred ceEEEEecccChhH---HHhhcCCCCeEeeCCC---cCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHH
Q 012322 151 LKILITSATLDGEK---VSKFFSNCPTLNVPGK---LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (466)
Q Consensus 151 ~~ii~~SAT~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~ 224 (466)
.+++++|||++.+. ...++.+...+.+... ...+...+......+. ...+........ +++||||++++
T Consensus 237 ~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k----~~~l~~~l~~~~-~~~lVF~~t~~ 311 (434)
T 2db3_A 237 HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAK----RSKLIEILSEQA-DGTIVFVETKR 311 (434)
T ss_dssp CEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGH----HHHHHHHHHHCC-TTEEEECSSHH
T ss_pred ceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHH----HHHHHHHHHhCC-CCEEEEEeCcH
Confidence 89999999998643 4456665555544321 1223322222222222 222333333333 35999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccce
Q 012322 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (466)
Q Consensus 225 ~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~ 304 (466)
+++.+++.|.+. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||++++|.
T Consensus 312 ~a~~l~~~L~~~----------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~-- 379 (434)
T 2db3_A 312 GADFLASFLSEK----------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPS-- 379 (434)
T ss_dssp HHHHHHHHHHHT----------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCS--
T ss_pred HHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCC--
Confidence 999999999886 77899999999999999999999999999999999999999999999999988765
Q ss_pred eecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCcc
Q 012322 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (466)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 347 (466)
+..+|+||+||+||. ++|.|+.+++++
T Consensus 380 ----------------~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 380 ----------------KIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp ----------------SHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred ----------------CHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 777999999999999 789999999854
No 10
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.2e-42 Score=353.13 Aligned_cols=310 Identities=17% Similarity=0.152 Sum_probs=223.4
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHH--HHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKST--QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt--~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
..++|.++++.+.+|+++++++|||+|||. ++|.+. ..++++++.|+++++.|+.+.+.+. +.......+.
T Consensus 45 ~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~-gi~~~~l~~~ 117 (591)
T 2v1x_A 45 FRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL-GISATMLNAS 117 (591)
T ss_dssp CCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH-TCCEEECCSS
T ss_pred CCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence 457899999999999999999999999994 444432 2458999999999999999988664 5544333321
Q ss_pred eEeecc--------ccCccceEEEcCHHHHHH------HHhhCCCCCCCcEEEecCCCcccc-CHHHHHH--HHHHHHHh
Q 012322 84 AIRFED--------RTSERTLIKYLTDGVLLR------EILSNPDLSPYSVIILDEAHERSL-NTDILLG--LVKRLVNL 146 (466)
Q Consensus 84 ~~~~~~--------~~~~~~~i~~~T~g~l~~------~~~~~~~l~~~~~iIiDEah~~~~-~~~~~~~--~l~~i~~~ 146 (466)
....+. ......+|+++||+.+.. .+.....+.++++|||||||+..- ..+|... .+..+...
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~ 197 (591)
T 2v1x_A 118 SSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ 197 (591)
T ss_dssp CCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH
T ss_pred CCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh
Confidence 111110 024578999999998742 222222467899999999997321 1122111 12334444
Q ss_pred hhcCceEEEEecccChh---HHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhc-CCCCCEEEecCC
Q 012322 147 RASKLKILITSATLDGE---KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVR-EPEGDVLIFMTG 222 (466)
Q Consensus 147 ~~~~~~ii~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lVF~~t 222 (466)
.+ +.+++++|||++.. .+..++.......+........+.|............+..+...... ..++++||||+|
T Consensus 198 ~~-~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~s 276 (591)
T 2v1x_A 198 FP-NASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFS 276 (591)
T ss_dssp CT-TSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSS
T ss_pred CC-CCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCc
Confidence 44 78999999999874 35566654333322221111122222111122233444555555433 356799999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCccc
Q 012322 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (466)
Q Consensus 223 ~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~ 302 (466)
+++++.+++.|.+. ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||+++.|+
T Consensus 277 r~~~e~la~~L~~~----------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~ 346 (591)
T 2v1x_A 277 QKDSEQVTVSLQNL----------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSK 346 (591)
T ss_dssp HHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCS
T ss_pred HHHHHHHHHHHHHC----------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCC
Confidence 99999999999886 78899999999999999999999999999999999999999999999999999876
Q ss_pred ceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
|.++|.||+|||||. .+|.|+.+|+..+...
T Consensus 347 ------------------s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~ 378 (591)
T 2v1x_A 347 ------------------SMENYYQESGRAGRDDMKADCILYYGFGDIFR 378 (591)
T ss_dssp ------------------SHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred ------------------CHHHHHHHhccCCcCCCCceEEEEEChHHHHH
Confidence 788999999999999 7999999998877543
No 11
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=345.41 Aligned_cols=313 Identities=17% Similarity=0.213 Sum_probs=218.6
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHH-HHHhcCc-CCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeee
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQ-ILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~-~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g 82 (466)
+.+.+|.+++..+.+|+++++.+|||||||+.+.. ++..... ..+.+++++.|+++++.|+.+.+.+..... +..++
T Consensus 62 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~ 140 (414)
T 3eiq_A 62 KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCH 140 (414)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGS-CCCEE
T ss_pred CCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhccc-CceEE
Confidence 56889999999999999999999999999955433 3333322 245689999999999999999887654221 12222
Q ss_pred eeEee-------ccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEE
Q 012322 83 YAIRF-------EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (466)
Q Consensus 83 ~~~~~-------~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (466)
..... ........+|+++||+.+.+.+.... .+.++++||+||+|+ ..+.++... +..+....+.+.+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~~~-~~~~~~~~~~~~~~i 218 (414)
T 3eiq_A 141 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE-MLSRGFKDQ-IYDIFQKLNSNTQVV 218 (414)
T ss_dssp ECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH-HHHTTTHHH-HHHHHTTSCTTCEEE
T ss_pred EEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH-hhccCcHHH-HHHHHHhCCCCCeEE
Confidence 11111 11112567999999999999886655 577899999999994 333333333 555666665689999
Q ss_pred EEecccChhH---HHhhcCCCCeEeeCCCcCc---eeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHH
Q 012322 155 ITSATLDGEK---VSKFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (466)
Q Consensus 155 ~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~ 228 (466)
++|||++.+. ...++.+...+........ +...+......+. ....+..+......+++||||+++++++.
T Consensus 219 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 295 (414)
T 3eiq_A 219 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDW 295 (414)
T ss_dssp EECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHH
T ss_pred EEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHH
Confidence 9999997653 3455555544444332221 2222222222222 23344444555567899999999999999
Q ss_pred HHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecC
Q 012322 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (466)
Q Consensus 229 l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~ 308 (466)
+++.|.+. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 296 l~~~l~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~------ 359 (414)
T 3eiq_A 296 LTEKMHAR----------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------ 359 (414)
T ss_dssp HHHHHHTT----------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCS------
T ss_pred HHHHHHhc----------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCC------
Confidence 99999876 77889999999999999999999999999999999999999999999999988765
Q ss_pred CCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 309 ~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
+..+|+||+||+||. ++|.|+.++++.+...
T Consensus 360 ------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 360 ------------NRENYIHRIGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp ------------STHHHHHHSCCC-------CEEEEECSTHHHH
T ss_pred ------------CHHHhhhhcCcccCCCCCceEEEEEcHHHHHH
Confidence 667999999999999 7899999999887654
No 12
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-41 Score=369.83 Aligned_cols=326 Identities=15% Similarity=0.174 Sum_probs=239.5
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
++.+++|.++++.+.+|++++++||||||||+.+...+.... ..+.++++++|+++++.|+++.+.+.++ .++...|
T Consensus 183 f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~~-~VglltG- 259 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTG- 259 (1108)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHTS-SEEEECS-
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEcCcHHHHHHHHHHHHHHhC-CccEEeC-
Confidence 467899999999999999999999999999955444443332 2467899999999999999999988876 3322222
Q ss_pred eEeeccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccCh
Q 012322 84 AIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (466)
Q Consensus 84 ~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~ 162 (466)
+.....+.+|+++|||.|.+.+.... .+.++++||||||| +..+.++... +..++...+.+.++++||||++.
T Consensus 260 ----d~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~-~e~ii~~l~~~~qvl~lSATipn 333 (1108)
T 3l9o_A 260 ----DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVV-WEETIILLPDKVRYVFLSATIPN 333 (1108)
T ss_dssp ----SCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHH-HHHHHHHSCTTSEEEEEECSCSS
T ss_pred ----ccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHH-HHHHHHhcCCCceEEEEcCCCCC
Confidence 33345678999999999999887766 47889999999999 6666665444 56666666678999999999954
Q ss_pred -hHHHhhcCC-----CCeEeeCCCcCceeeeecCCCC----------Cch------------------------------
Q 012322 163 -EKVSKFFSN-----CPTLNVPGKLYPVEILHSKERP----------TSY------------------------------ 196 (466)
Q Consensus 163 -~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----------~~~------------------------------ 196 (466)
..+.+|+.. ..++....+..++..++..... ..+
T Consensus 334 ~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 413 (1108)
T 3l9o_A 334 AMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKG 413 (1108)
T ss_dssp CHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccc
Confidence 456666532 3445555566665543321100 000
Q ss_pred -----------HHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCC----------------------
Q 012322 197 -----------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEG---------------------- 243 (466)
Q Consensus 197 -----------~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~---------------------- 243 (466)
....+..++..+.....+++||||+++++|+.++..|..........
T Consensus 414 ~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l 493 (1108)
T 3l9o_A 414 QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDREL 493 (1108)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCC
T ss_pred cccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhh
Confidence 02233345555555667799999999999999999986531110000
Q ss_pred -------CCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccc
Q 012322 244 -------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLD 316 (466)
Q Consensus 244 -------~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~ 316 (466)
.....++.+|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++.+. |.. .
T Consensus 494 ~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~----d~~------~ 563 (1108)
T 3l9o_A 494 PQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKW----DGQ------Q 563 (1108)
T ss_dssp HHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEE----SSS------C
T ss_pred hhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCccc----Ccc------c
Confidence 00012388999999999999999999999999999999999999999999999876542 221 2
Q ss_pred eeeecHHHHHHhccccCCCC---CCeEEEecCccc
Q 012322 317 VVQISKVQANQRVGRAGRTR---PGKCYRLYPSTV 348 (466)
Q Consensus 317 ~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~ 348 (466)
..|+|..+|+||+|||||.+ .|.||.++++..
T Consensus 564 ~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 564 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 35789999999999999996 899999998764
No 13
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.8e-40 Score=327.33 Aligned_cols=312 Identities=18% Similarity=0.179 Sum_probs=229.3
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHHH-HHHHHhcC-cCCCcEEEEeCchhHHHHHHHHHHHHHhCC---ccCCe
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQL-SQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGEE 80 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~-~~~~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~---~~~~~ 80 (466)
.+++|.++++.+.+++++++.+|||||||..+ ..++.... ...+.+++++.|+++++.|+++.+.+.... .+...
T Consensus 44 ~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 123 (400)
T 1s2m_A 44 PSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVT 123 (400)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEE
Confidence 67899999999999999999999999999433 33333322 224558999999999999999988765432 22211
Q ss_pred eeeeEeec--cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 81 VGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 81 ~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
.|...... .......+|+++||+.+.+.+.... .+.++++||+||+| +..+.++. ..+..+....+...+++++|
T Consensus 124 ~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~~~~~~-~~~~~i~~~~~~~~~~i~lS 201 (400)
T 1s2m_A 124 TGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD-KMLSRDFK-TIIEQILSFLPPTHQSLLFS 201 (400)
T ss_dssp CSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH-HHSSHHHH-HHHHHHHTTSCSSCEEEEEE
T ss_pred eCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch-HhhhhchH-HHHHHHHHhCCcCceEEEEE
Confidence 12110000 1123567999999999988876543 68899999999999 55565544 34677776666688999999
Q ss_pred cccChhH---HHhhcCCCCeEeeCCCc--CceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHH
Q 012322 158 ATLDGEK---VSKFFSNCPTLNVPGKL--YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (466)
Q Consensus 158 AT~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~ 232 (466)
||++... +..++.....+...... ..+...+........ ...+..+......+++||||+++++++.+++.
T Consensus 202 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~ 277 (400)
T 1s2m_A 202 ATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQK----LHCLNTLFSKLQINQAIIFCNSTNRVELLAKK 277 (400)
T ss_dssp SCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGH----HHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhH----HHHHHHHHhhcCCCcEEEEEecHHHHHHHHHH
Confidence 9997643 44555544333332221 112222222222111 22223333334567999999999999999999
Q ss_pred HHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCc
Q 012322 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (466)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~ 312 (466)
|.+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 278 L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~---------- 337 (400)
T 1s2m_A 278 ITDL----------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPK---------- 337 (400)
T ss_dssp HHHH----------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCS----------
T ss_pred HHhc----------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCC----------
Confidence 9886 77889999999999999999999999999999999999999999999999988754
Q ss_pred cccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 313 ~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
|..+|+||+||+||. ++|.|+.++++++...
T Consensus 338 --------s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 338 --------TAETYLHRIGRSGRFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp --------SHHHHHHHHCBSSCTTCCEEEEEEECGGGHHH
T ss_pred --------CHHHHHHhcchhcCCCCCceEEEEeccchHHH
Confidence 777999999999999 7999999999987654
No 14
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.6e-41 Score=335.88 Aligned_cols=312 Identities=16% Similarity=0.211 Sum_probs=228.5
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcC-cCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
.+++|.++++.+.+|+++++.+|||||||.. +..++.... ...+.+++++.|+++++.|+++.+.+... ..+..++.
T Consensus 60 ~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~ 138 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGD-YMNVQCHA 138 (410)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT-TTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhc-cCCeEEEE
Confidence 5789999999999999999999999999943 333443332 22456899999999999999998866432 22222221
Q ss_pred eEeec------cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEE
Q 012322 84 AIRFE------DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (466)
Q Consensus 84 ~~~~~------~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~ 156 (466)
..... .......+|+++||+.+...+.... .+.++++||+||+| +..+.++... +..+....+.+.+++++
T Consensus 139 ~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah-~~~~~~~~~~-~~~i~~~~~~~~~~i~~ 216 (410)
T 2j0s_A 139 CIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD-EMLNKGFKEQ-IYDVYRYLPPATQVVLI 216 (410)
T ss_dssp ECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHTSTTTHHH-HHHHHTTSCTTCEEEEE
T ss_pred EECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHH-HHHhhhhHHH-HHHHHHhCccCceEEEE
Confidence 11100 0112356899999999998886543 67889999999999 4555554433 56666666668899999
Q ss_pred ecccChhH---HHhhcCCCCeEeeCCCc---CceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHH
Q 012322 157 SATLDGEK---VSKFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (466)
Q Consensus 157 SAT~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~ 230 (466)
|||++.+. ...++.++..+...... ..+...+......+.....+ ..+......+++||||+++++++.++
T Consensus 217 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l---~~~~~~~~~~~~lVf~~~~~~~~~l~ 293 (410)
T 2j0s_A 217 SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL---CDLYDTLTITQAVIFCNTKRKVDWLT 293 (410)
T ss_dssp ESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHH---HHHHHHHTSSEEEEECSSHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHH---HHHHHhcCCCcEEEEEcCHHHHHHHH
Confidence 99998653 33455544444333222 12222222222223222222 33333334569999999999999999
Q ss_pred HHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCC
Q 012322 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (466)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~ 310 (466)
+.|.+. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 294 ~~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~-------- 355 (410)
T 2j0s_A 294 EKMREA----------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN-------- 355 (410)
T ss_dssp HHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCS--------
T ss_pred HHHHhC----------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCC--------
Confidence 999886 77789999999999999999999999999999999999999999999999988765
Q ss_pred CccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 311 ~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
+..+|+||+||+||. ++|.|+.++++++...
T Consensus 356 ----------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (410)
T 2j0s_A 356 ----------NRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 387 (410)
T ss_dssp ----------SHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHH
T ss_pred ----------CHHHHHHhcccccCCCCceEEEEEecHHHHHH
Confidence 777999999999999 7999999998887544
No 15
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.5e-42 Score=348.08 Aligned_cols=318 Identities=16% Similarity=0.183 Sum_probs=117.1
Q ss_pred hHhHHHHHHHHhcC--CEEEEEcCCCCcHHHH-HHHHHHhcCc-CCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeee
Q 012322 7 LQYEETIVETVEQN--PVVVVIGETGSGKSTQ-LSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (466)
Q Consensus 7 ~~~q~~i~~~i~~~--~~~ii~apTGsGKTt~-~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g 82 (466)
+++|.++++.+..+ ++++++||||||||.. +.+++..... ..+.+++++.|+++++.|+++.+.+.........++
T Consensus 116 ~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~ 195 (479)
T 3fmp_B 116 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 195 (479)
T ss_dssp CHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEE
T ss_pred CHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEE
Confidence 45699999999887 9999999999999944 3334333322 233489999999999999988887665433333333
Q ss_pred eeEe---eccccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccC-HHHHHHHHHHHHHhhhcCceEEEE
Q 012322 83 YAIR---FEDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKILIT 156 (466)
Q Consensus 83 ~~~~---~~~~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~-~~~~~~~l~~i~~~~~~~~~ii~~ 156 (466)
+... .........+|+++||+.+.+.+.... .+.++++||+||+|. ..+ ..+. ..+..+....+.+.+++++
T Consensus 196 ~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~-~~~~~~~~-~~~~~i~~~~~~~~~~i~~ 273 (479)
T 3fmp_B 196 YAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV-MIATQGHQ-DQSIRIQRMLPRNCQMLLF 273 (479)
T ss_dssp EESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH-HHTSTTHH-HHHHHHHTTSCTTSEEEEE
T ss_pred EEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH-HhhcCCcH-HHHHHHHhhCCccceEEEE
Confidence 2221 112223456899999999999886644 458999999999994 443 3333 3355666666668999999
Q ss_pred ecccChhH---HHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHH
Q 012322 157 SATLDGEK---VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKL 233 (466)
Q Consensus 157 SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L 233 (466)
|||++.+. ...++.+...+.+..........................+...+.....+++||||++++.++.+++.|
T Consensus 274 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L 353 (479)
T 3fmp_B 274 SATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 353 (479)
T ss_dssp ESCCCHHHHHHHHHHSSSEEEEEEC-------------------------------------------------------
T ss_pred eCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHH
Confidence 99998753 345565555555543322111111100000111122223333333345679999999999999999999
Q ss_pred HHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCcc
Q 012322 234 EDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMY 313 (466)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~ 313 (466)
... +..+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||++++|....
T Consensus 354 ~~~----------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~-------- 415 (479)
T 3fmp_B 354 SKE----------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD-------- 415 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhC----------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCc--------
Confidence 876 77899999999999999999999999999999999999999999999999998875332
Q ss_pred ccceeeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 314 ~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
.+.+..+|+||+|||||. .+|.|+.++++.+
T Consensus 416 ----~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 416 ----GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ------------------------------------
T ss_pred ----cCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 124677999999999998 6799999998665
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.3e-40 Score=328.70 Aligned_cols=310 Identities=17% Similarity=0.164 Sum_probs=228.2
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHHH-HHHHHhcC-cCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQL-SQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~-~~~~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
.+++|.++++.+.+++++++.+|||+|||... ..++.... ...+.+++++.|+++++.|+.+.+.+......+..++.
T Consensus 31 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 110 (391)
T 1xti_A 31 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 110 (391)
T ss_dssp CCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 67899999999999999999999999999433 33333332 23455899999999999999998877653322222221
Q ss_pred eEeec---c----ccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccC-HHHHHHHHHHHHHhhhcCceEE
Q 012322 84 AIRFE---D----RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKIL 154 (466)
Q Consensus 84 ~~~~~---~----~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~-~~~~~~~l~~i~~~~~~~~~ii 154 (466)
..... . ......+|+++|++.+...+.... .+.+++++|+||+|. ..+ .++... +..+....+.+.+++
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~-~~~~~~~~~~-~~~~~~~~~~~~~~i 188 (391)
T 1xti_A 111 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK-MLEQLDMRRD-VQEIFRMTPHEKQVM 188 (391)
T ss_dssp ECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHH-HTSSHHHHHH-HHHHHHTSCSSSEEE
T ss_pred EeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHH-HhhccchHHH-HHHHHhhCCCCceEE
Confidence 11100 0 011236899999999998876554 688999999999994 443 344433 566666666688999
Q ss_pred EEecccChh---HHHhhcCCCCeEeeCCCc----CceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHH
Q 012322 155 ITSATLDGE---KVSKFFSNCPTLNVPGKL----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (466)
Q Consensus 155 ~~SAT~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~ 227 (466)
++|||++.. .+..++.++..+...... ..+...+......+. ...+.........+++||||+++++++
T Consensus 189 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~lvf~~~~~~~~ 264 (391)
T 1xti_A 189 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEK----NRKLFDLLDVLEFNQVVIFVKSVQRCI 264 (391)
T ss_dssp EEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGH----HHHHHHHHHHSCCSEEEEECSCHHHHH
T ss_pred EEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhH----HHHHHHHHHhcCCCcEEEEeCcHHHHH
Confidence 999999764 345666655544443321 122222222222222 222233333346689999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeec
Q 012322 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (466)
Q Consensus 228 ~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~ 307 (466)
.+++.|.+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 265 ~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~----- 329 (391)
T 1xti_A 265 ALAQLLVEQ----------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE----- 329 (391)
T ss_dssp HHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCS-----
T ss_pred HHHHHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCC-----
Confidence 999999886 67789999999999999999999999999999999999999999999999988765
Q ss_pred CCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
|..+|+||+||+||. ++|.|+.++++++.
T Consensus 330 -------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 330 -------------DSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp -------------SHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred -------------CHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 778999999999998 78999999987654
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.4e-40 Score=323.74 Aligned_cols=311 Identities=20% Similarity=0.238 Sum_probs=230.1
Q ss_pred CchHhHHHHHHHHhcC-CEEEEEcCCCCcHHHHHHH-HHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCee-
Q 012322 5 PILQYEETIVETVEQN-PVVVVIGETGSGKSTQLSQ-ILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV- 81 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~-~~~ii~apTGsGKTt~~~~-~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~- 81 (466)
..+++|.++++.+.++ +++++.+|||||||..+.. ++.......+.+++++.|+++++.|+++.+.+..+.......
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~ 107 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAK 107 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 3578899999988887 6999999999999955433 333333335668999999999999999999887654321111
Q ss_pred --eeeEe-eccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 82 --GYAIR-FEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 82 --g~~~~-~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
|.... .......+.+|+++|++.+.+.+.... .+.+++++|+||+|. ..+.++... +..+....+.+.+++++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~-~~~~~~~~~-~~~~~~~~~~~~~~i~~S 185 (367)
T 1hv8_A 108 IYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE-MLNMGFIKD-VEKILNACNKDKRILLFS 185 (367)
T ss_dssp ECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH-HHTTTTHHH-HHHHHHTSCSSCEEEEEC
T ss_pred EECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH-hhhhchHHH-HHHHHHhCCCCceEEEEe
Confidence 10000 000111367899999999998886554 578999999999994 444444333 555655555688999999
Q ss_pred cccChhH---HHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHH
Q 012322 158 ATLDGEK---VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLE 234 (466)
Q Consensus 158 AT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~ 234 (466)
||++.+. +..++++...+..... ..+...+......+.. ..+..... ..++++||||+++++++.+++.|.
T Consensus 186 AT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~ 259 (367)
T 1hv8_A 186 ATMPREILNLAKKYMGDYSFIKAKIN-ANIEQSYVEVNENERF----EALCRLLK-NKEFYGLVFCKTKRDTKELASMLR 259 (367)
T ss_dssp SSCCHHHHHHHHHHCCSEEEEECCSS-SSSEEEEEECCGGGHH----HHHHHHHC-STTCCEEEECSSHHHHHHHHHHHH
T ss_pred eccCHHHHHHHHHHcCCCeEEEecCC-CCceEEEEEeChHHHH----HHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHH
Confidence 9998753 4566665544443322 2333333322322222 22233322 556799999999999999999998
Q ss_pred HhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccc
Q 012322 235 DKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYS 314 (466)
Q Consensus 235 ~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~ 314 (466)
+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 260 ~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~------------ 317 (367)
T 1hv8_A 260 DI----------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQ------------ 317 (367)
T ss_dssp HT----------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCS------------
T ss_pred hc----------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCC------------
Confidence 76 77889999999999999999999999999999999999999999999999988654
Q ss_pred cceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 315 LDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 315 ~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
|..+|.||+||+||. ++|.|+.+++++++..
T Consensus 318 ------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 318 ------NPESYMHRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp ------CHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred ------CHHHhhhcccccccCCCccEEEEEEcHHHHHH
Confidence 778999999999999 6999999999887654
No 18
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-40 Score=329.47 Aligned_cols=313 Identities=18% Similarity=0.159 Sum_probs=221.8
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHH-HHHHHHHhc-C------------------cCCCcEEEEeCchhHHHHH
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRH-G------------------YTKSGIIGVTQPRRVAAVS 64 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt-~~~~~~~~~-~------------------~~~~~~i~~~~p~~~l~~~ 64 (466)
..+++|.++++.+.++++++++||||||||. ++..++... . ...+.+++++.|+++++.|
T Consensus 37 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 116 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQ 116 (417)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHH
Confidence 3467899999999999999999999999994 333333221 1 0112478999999999999
Q ss_pred HHHHHHHHhCC---ccCCeeeeeEeec--cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHH
Q 012322 65 VARRVAQELGV---RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLG 138 (466)
Q Consensus 65 ~~~~~~~~~~~---~~~~~~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~ 138 (466)
+++.+.+.... .+....|...... .....+.+|+++||+.+.+.+.... .+.++++||+||+| +..+.++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah-~~~~~~~~~- 194 (417)
T 2i4i_A 117 IYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEAD-RMLDMGFEP- 194 (417)
T ss_dssp HHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHH-HHHHTTCHH-
T ss_pred HHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChh-HhhccCcHH-
Confidence 99988765432 2221222110000 1113457899999999998886654 58899999999999 344333333
Q ss_pred HHHHHHHhh--h--cCceEEEEecccChhH---HHhhcCCCCeEeeCCCc---CceeeeecCCCCCchHHHHHHHHHHHh
Q 012322 139 LVKRLVNLR--A--SKLKILITSATLDGEK---VSKFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIH 208 (466)
Q Consensus 139 ~l~~i~~~~--~--~~~~ii~~SAT~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (466)
.++.+.... + ...+++++|||++.+. ...++.+...+...... ..+...+......+. ...+..+.
T Consensus 195 ~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~l~~~l 270 (417)
T 2i4i_A 195 QIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK----RSFLLDLL 270 (417)
T ss_dssp HHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGH----HHHHHHHH
T ss_pred HHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhH----HHHHHHHH
Confidence 355555421 1 2578999999997642 44566554444433211 112222222222221 22222333
Q ss_pred hc-CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEeccccccc
Q 012322 209 VR-EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSL 287 (466)
Q Consensus 209 ~~-~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gi 287 (466)
.. ..++++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++.|++|+.+|||||+++++|+
T Consensus 271 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 340 (417)
T 2i4i_A 271 NATGKDSLTLVFVETKKGADSLEDFLYHE----------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGL 340 (417)
T ss_dssp HTCCTTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTS
T ss_pred HhcCCCCeEEEEECCHHHHHHHHHHHHHC----------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCC
Confidence 22 34678999999999999999999886 77899999999999999999999999999999999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 288 dip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
|+|++++||+++.|. |..+|+||+||+||. ++|.|+.++++++...
T Consensus 341 dip~v~~Vi~~~~p~------------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 341 DISNVKHVINFDLPS------------------DIEEYVHRIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp CCCCEEEEEESSCCS------------------SHHHHHHHHTTBCC--CCEEEEEEECGGGGGG
T ss_pred CcccCCEEEEEcCCC------------------CHHHHHHhcCccccCCCCceEEEEEccccHHH
Confidence 999999999988765 778999999999999 7899999999887654
No 19
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5e-41 Score=342.98 Aligned_cols=297 Identities=22% Similarity=0.264 Sum_probs=217.7
Q ss_pred CCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeee
Q 012322 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (466)
Q Consensus 3 ~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g 82 (466)
.+|++.+|++++..+.++++++++||||||||++++..+.. .+.+++++.|+++++.|+++++.+.++..++..+|
T Consensus 215 ~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG 290 (666)
T 3o8b_A 215 RSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTG 290 (666)
T ss_dssp HSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECS
T ss_pred cCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH----CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 47999999999999999999999999999999776665554 24589999999999999999999998887766666
Q ss_pred eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC--ceEEEEeccc
Q 012322 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK--LKILITSATL 160 (466)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~--~~ii~~SAT~ 160 (466)
+.. ...+.+|+++|||++++ .....+.++++|||||+|+ ++.++... +..+.+..+.. ..+++||||+
T Consensus 291 ~~~-----~~~~~~IlV~TPGrLl~--~~~l~l~~l~~lVlDEAH~--l~~~~~~~-l~~Il~~l~~~~~~llil~SAT~ 360 (666)
T 3o8b_A 291 VRT-----ITTGAPVTYSTYGKFLA--DGGCSGGAYDIIICDECHS--TDSTTILG-IGTVLDQAETAGARLVVLATATP 360 (666)
T ss_dssp SCE-----ECCCCSEEEEEHHHHHH--TTSCCTTSCSEEEETTTTC--CSHHHHHH-HHHHHHHTTTTTCSEEEEEESSC
T ss_pred cEe-----ccCCCCEEEECcHHHHh--CCCcccCcccEEEEccchh--cCccHHHH-HHHHHHhhhhcCCceEEEECCCC
Confidence 432 34568999999999732 2223577899999999995 44555433 44444444423 3478889999
Q ss_pred ChhHHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhc
Q 012322 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~ 240 (466)
+.. +. ........+.-.... ...+.... .. ......+++||||+|+++++.+++.|++.
T Consensus 361 ~~~-i~--~~~p~i~~v~~~~~~-~i~~~~~~-~~------------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~---- 419 (666)
T 3o8b_A 361 PGS-VT--VPHPNIEEVALSNTG-EIPFYGKA-IP------------IEAIRGGRHLIFCHSKKKCDELAAKLSGL---- 419 (666)
T ss_dssp TTC-CC--CCCTTEEEEECBSCS-SEEETTEE-EC------------GGGSSSSEEEEECSCHHHHHHHHHHHHTT----
T ss_pred Ccc-cc--cCCcceEEEeecccc-hhHHHHhh-hh------------hhhccCCcEEEEeCCHHHHHHHHHHHHhC----
Confidence 753 11 011111111000000 00110000 00 11235689999999999999999999876
Q ss_pred cCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCccccee----ecCCCCccccc
Q 012322 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ----YNPSSGMYSLD 316 (466)
Q Consensus 241 ~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~----~~~~~~~~~~~ 316 (466)
++.+..+||+|++++ |+++..+||||||++++|||+| +++|||+|+.+..+ |||..++.. .
T Consensus 420 ------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~ 484 (666)
T 3o8b_A 420 ------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-T 484 (666)
T ss_dssp ------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-E
T ss_pred ------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc-c
Confidence 778999999999875 3456669999999999999997 99999999888665 455566544 3
Q ss_pred eeeecHHHHHHhccccCCCCCCeEEEecCccchh
Q 012322 317 VVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYH 350 (466)
Q Consensus 317 ~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 350 (466)
..|.|.++|+||+||+||.++|. |.+|++++..
T Consensus 485 ~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 485 TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred cCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 57999999999999999988999 9999887654
No 20
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.8e-40 Score=336.27 Aligned_cols=304 Identities=18% Similarity=0.208 Sum_probs=217.7
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHH--HHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKST--QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt--~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
.+++|.++++.+.+|+++++++|||+|||. +++.+.. .+.++++.|+++++.|+.+.+.+ .+.......+.
T Consensus 26 ~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~aL~~q~~~~l~~-~gi~~~~l~~~ 98 (523)
T 1oyw_A 26 FRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLISLMKDQVDQLQA-NGVAAACLNST 98 (523)
T ss_dssp CCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCHHHHHHHHHHHHH-TTCCEEEECTT
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChHHHHHHHHHHHHH-cCCcEEEEeCC
Confidence 367899999999999999999999999994 5554432 35789999999999999998864 44433222221
Q ss_pred eEeec------cccCccceEEEcCHHHHHHHH-hhCCCCCCCcEEEecCCCcccc-CHHH--HHHHHHHHHHhhhcCceE
Q 012322 84 AIRFE------DRTSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSL-NTDI--LLGLVKRLVNLRASKLKI 153 (466)
Q Consensus 84 ~~~~~------~~~~~~~~i~~~T~g~l~~~~-~~~~~l~~~~~iIiDEah~~~~-~~~~--~~~~l~~i~~~~~~~~~i 153 (466)
....+ .......+|+++||+.+.... .......++++|||||||+..- ..++ ....+..+....+ +.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~ 177 (523)
T 1oyw_A 99 QTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPF 177 (523)
T ss_dssp SCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-CCCE
Confidence 11000 011245799999999885321 1111346899999999997331 1112 1122444555555 7899
Q ss_pred EEEecccChhH---HHhhcC-CCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHH
Q 012322 154 LITSATLDGEK---VSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (466)
Q Consensus 154 i~~SAT~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l 229 (466)
+++|||++... +.++++ ..+.+...+...+ .+.+......+.. ..+........++++||||+|+++++.+
T Consensus 178 i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~----~~l~~~l~~~~~~~~IVf~~sr~~~e~l 252 (523)
T 1oyw_A 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYMLMEKFKPL----DQLMRYVQEQRGKSGIIYCNSRAKVEDT 252 (523)
T ss_dssp EEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEEEEECSSHH----HHHHHHHHHTTTCCEEEECSSHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEEEEeCCCHH----HHHHHHHHhcCCCcEEEEeCCHHHHHHH
Confidence 99999998753 445553 2333333332211 1222211122222 2233333344667999999999999999
Q ss_pred HHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCC
Q 012322 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (466)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~ 309 (466)
++.|.+. ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|++++||+++.|+
T Consensus 253 ~~~L~~~----------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~------- 315 (523)
T 1oyw_A 253 AARLQSK----------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR------- 315 (523)
T ss_dssp HHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCS-------
T ss_pred HHHHHHC----------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCC-------
Confidence 9999886 77899999999999999999999999999999999999999999999999988876
Q ss_pred CCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchh
Q 012322 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (466)
Q Consensus 310 ~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (466)
|.++|.||+|||||. .+|.|+.+|+.++..
T Consensus 316 -----------s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 316 -----------NIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp -----------SHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred -----------CHHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 788999999999999 689999999887753
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.6e-41 Score=332.20 Aligned_cols=314 Identities=18% Similarity=0.236 Sum_probs=116.9
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcC-cCCCcEEEEeCchhHHHHHHHHHHHHHhCC---ccCC
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGE 79 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~---~~~~ 79 (466)
..+++|.++++.+.+++++++.+|||||||.. +..++.... ...+.+++++.|+++++.|+.+.+.+.... .+..
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 122 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHA 122 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEE
Confidence 45789999999999999999999999999944 333333332 234568999999999999999988765432 2222
Q ss_pred eeeeeEeecc-ccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 80 EVGYAIRFED-RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 80 ~~g~~~~~~~-~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
..|....... ....+.+|+++||+.+.+.+.... .+.+++++|+||+|. ..+.++... +..+....+.+.+++++|
T Consensus 123 ~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~-~~~~~~~~~-~~~~~~~~~~~~~~i~~S 200 (394)
T 1fuu_A 123 CIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSGFKEQ-IYQIFTLLPPTTQVVLLS 200 (394)
T ss_dssp ECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTTCHHH-HHHHHHHSCTTCEEEEEC
T ss_pred EeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH-hhCCCcHHH-HHHHHHhCCCCceEEEEE
Confidence 2221110000 011257899999999988876544 578899999999994 333333333 455555555588999999
Q ss_pred cccChhH---HHhhcCCCCeEeeCCCcCce---eeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHH
Q 012322 158 ATLDGEK---VSKFFSNCPTLNVPGKLYPV---EILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (466)
Q Consensus 158 AT~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~ 231 (466)
||++... ...++.++..+......... ...+......++ ....+..+......+++||||+++++++.+++
T Consensus 201 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 277 (394)
T 1fuu_A 201 ATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEY---KYECLTDLYDSISVTQAVIFCNTRRKVEELTT 277 (394)
T ss_dssp SSCCHHHHHHHHHHCCSCEEEEECC-------------------------------------------------------
T ss_pred EecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhh---HHHHHHHHHhcCCCCcEEEEECCHHHHHHHHH
Confidence 9998643 45666655544443322211 111111111111 11222223333356799999999999999999
Q ss_pred HHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCC
Q 012322 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (466)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~ 311 (466)
.|++. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 278 ~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~--------- 338 (394)
T 1fuu_A 278 KLRND----------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA--------- 338 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHc----------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCC---------
Confidence 99875 77889999999999999999999999999999999999999999999999987654
Q ss_pred ccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 312 ~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
|..+|+||+||+||. ++|.|+.++++++...
T Consensus 339 ---------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 339 ---------NKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp -----------------------------------------
T ss_pred ---------CHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 667899999999999 7899999998887654
No 22
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.4e-39 Score=336.38 Aligned_cols=318 Identities=17% Similarity=0.185 Sum_probs=218.8
Q ss_pred chHhHHHHHHHHh--cCCEEEEEcCCCCcHHH-HHHHHHHhcCc-----CCCcEEEEeCchhHHHHHHHHHHHHHhC---
Q 012322 6 ILQYEETIVETVE--QNPVVVVIGETGSGKST-QLSQILHRHGY-----TKSGIIGVTQPRRVAAVSVARRVAQELG--- 74 (466)
Q Consensus 6 i~~~q~~i~~~i~--~~~~~ii~apTGsGKTt-~~~~~~~~~~~-----~~~~~i~~~~p~~~l~~~~~~~~~~~~~--- 74 (466)
.+++|.++++.+. ++++++++||||||||. ++.+++..... ..+.+++++.|+++++.|+++.+.+...
T Consensus 95 ~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~ 174 (563)
T 3i5x_A 95 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 174 (563)
T ss_dssp CCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhcc
Confidence 6789999999988 67899999999999993 33333322211 1234899999999999999998876532
Q ss_pred -CccCCeeeeeEeec------cccCccceEEEcCHHHHHHHHhhC--CCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 75 -VRLGEEVGYAIRFE------DRTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 75 -~~~~~~~g~~~~~~------~~~~~~~~i~~~T~g~l~~~~~~~--~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
.............. .......+|+++||+.+...+... ..+.++++||+||||+ ..+.++... +..+..
T Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-l~~~~f~~~-~~~i~~ 252 (563)
T 3i5x_A 175 GLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR-LLEIGFRDD-LETISG 252 (563)
T ss_dssp GGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH-HTSTTTHHH-HHHHHH
T ss_pred ccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH-HhccchHHH-HHHHHH
Confidence 11111111000000 001235789999999998877543 2578899999999994 444433222 222322
Q ss_pred hh-------hcCceEEEEecccChh--HHH-hhcCCCCeEeeCCC-------cCceeeeec-CCCCCchHHHHHHHHHHH
Q 012322 146 LR-------ASKLKILITSATLDGE--KVS-KFFSNCPTLNVPGK-------LYPVEILHS-KERPTSYLESALKTAIDI 207 (466)
Q Consensus 146 ~~-------~~~~~ii~~SAT~~~~--~~~-~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 207 (466)
.. ..+.+++++|||++.. .+. .++.....+.+... ...+...+. ...........+..+...
T Consensus 253 ~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (563)
T 3i5x_A 253 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQ 332 (563)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred hhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHH
Confidence 21 2367999999999864 233 33433333322110 011111111 111122233333444333
Q ss_pred hh-cCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccc
Q 012322 208 HV-REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETS 286 (466)
Q Consensus 208 ~~-~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~G 286 (466)
.. ....+++||||+|++.++.+++.|.+.+. .++.+..+||+|++++|.++++.|++|+.+|||||+++++|
T Consensus 333 ~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 405 (563)
T 3i5x_A 333 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARG 405 (563)
T ss_dssp HHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSS
T ss_pred HhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcC
Confidence 33 25567999999999999999999988753 26779999999999999999999999999999999999999
Q ss_pred cccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchh
Q 012322 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (466)
Q Consensus 287 idip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (466)
||+|++++||+++.|. +..+|+||+|||||. .+|.|+.++++.+..
T Consensus 406 iDip~v~~VI~~~~p~------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 406 MDFPNVHEVLQIGVPS------------------ELANYIHRIGRTARSGKEGSSVLFICKDELP 452 (563)
T ss_dssp CCCTTCCEEEEESCCS------------------STTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred CCcccCCEEEEECCCC------------------chhhhhhhcCccccCCCCceEEEEEchhHHH
Confidence 9999999999988765 566999999999999 689999999887654
No 23
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-40 Score=338.28 Aligned_cols=315 Identities=18% Similarity=0.215 Sum_probs=203.9
Q ss_pred chHhHHHHHHHHhcC--CEEEEEcCCCCcHHHH-HHHHHHhcCc-CCCcEEEEeCchhHHHHHHHHHHHHHhCCcc-CCe
Q 012322 6 ILQYEETIVETVEQN--PVVVVIGETGSGKSTQ-LSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRL-GEE 80 (466)
Q Consensus 6 i~~~q~~i~~~i~~~--~~~ii~apTGsGKTt~-~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~-~~~ 80 (466)
.+.+|.++++.+.++ ++++++||||||||.. +..++..... ..+.+++++.|+++++.|+++++.+..+... ...
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~ 221 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA 221 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEE
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEE
Confidence 456788888999887 8999999999999954 3334433322 2345899999999999999999877654322 112
Q ss_pred eeeeEeeccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccC-HHHHHHHHHHHHHhhhcCceEEEEec
Q 012322 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKILITSA 158 (466)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~-~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (466)
.+.............+|+++|++.+.+.+.... .+.++++||+||+|. ..+ .. ....+..+....+.+.+++++||
T Consensus 222 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~-~~~~~~-~~~~~~~i~~~~~~~~~~i~lSA 299 (508)
T 3fho_A 222 FGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN-MLDQQG-LGDQSMRIKHLLPRNTQIVLFSA 299 (508)
T ss_dssp C----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHH-HTTC---CHHHHHHHHHHSCTTCEEEEEES
T ss_pred EEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhh-hcccCC-cHHHHHHHHHhCCcCCeEEEEeC
Confidence 222222222223468999999999998876554 688999999999994 333 33 33335666666666899999999
Q ss_pred ccChh--H-HHhhcCCCCeEeeCCCcCcee---eeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHH
Q 012322 159 TLDGE--K-VSKFFSNCPTLNVPGKLYPVE---ILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (466)
Q Consensus 159 T~~~~--~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~ 232 (466)
|++.. . ...++.+...+.......... ..+...... ......+.........+++||||+++++++.+++.
T Consensus 300 T~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~ 376 (508)
T 3fho_A 300 TFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE---EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARR 376 (508)
T ss_dssp CCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C---HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHH
T ss_pred CCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch---HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHH
Confidence 99753 3 334555554444443332221 111111111 22333444444455678999999999999999999
Q ss_pred HHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCc
Q 012322 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (466)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~ 312 (466)
|.+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|....
T Consensus 377 L~~~----------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~------- 439 (508)
T 3fho_A 377 MTAD----------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQA------- 439 (508)
T ss_dssp HTTT----------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC---------
T ss_pred HHhC----------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCccc-------
Confidence 9765 67788999999999999999999999999999999999999999999999988764221
Q ss_pred cccceeeecHHHHHHhccccCCC-CCCeEEEecCcc
Q 012322 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (466)
Q Consensus 313 ~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 347 (466)
.+.|..+|+||+||+||. .+|.|+.+++..
T Consensus 440 -----~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 440 -----GRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp --------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred -----CCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 123677999999999999 689999999754
No 24
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.6e-39 Score=336.34 Aligned_cols=318 Identities=16% Similarity=0.173 Sum_probs=219.9
Q ss_pred chHhHHHHHHHHh--cCCEEEEEcCCCCcHHH-HHHHHHHhcCc-----CCCcEEEEeCchhHHHHHHHHHHHHHhC---
Q 012322 6 ILQYEETIVETVE--QNPVVVVIGETGSGKST-QLSQILHRHGY-----TKSGIIGVTQPRRVAAVSVARRVAQELG--- 74 (466)
Q Consensus 6 i~~~q~~i~~~i~--~~~~~ii~apTGsGKTt-~~~~~~~~~~~-----~~~~~i~~~~p~~~l~~~~~~~~~~~~~--- 74 (466)
.+++|.++++.+. ++++++++||||||||. ++.+++..... ..+.+++++.|+++++.|+++.+.+...
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~ 123 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 123 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcc
Confidence 5789999999988 78899999999999993 23333322211 1245889999999999999998876542
Q ss_pred -CccCCeeeeeEeec------cccCccceEEEcCHHHHHHHHhhC--CCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 75 -VRLGEEVGYAIRFE------DRTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 75 -~~~~~~~g~~~~~~------~~~~~~~~i~~~T~g~l~~~~~~~--~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
.............. .......+|+++||+.+...+... ..+.++++||+||||+ ..+.++... +..+..
T Consensus 124 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-l~~~gf~~~-~~~i~~ 201 (579)
T 3sqw_A 124 GLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR-LLEIGFRDD-LETISG 201 (579)
T ss_dssp GGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH-HTSTTTHHH-HHHHHH
T ss_pred cccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH-hhcCCCHHH-HHHHHH
Confidence 12111111000000 001235789999999998877543 3678899999999994 444443322 233332
Q ss_pred hhh-------cCceEEEEecccChhH--H-HhhcCCCCeEeeCCC-------cCceeeeec-CCCCCchHHHHHHHHHHH
Q 012322 146 LRA-------SKLKILITSATLDGEK--V-SKFFSNCPTLNVPGK-------LYPVEILHS-KERPTSYLESALKTAIDI 207 (466)
Q Consensus 146 ~~~-------~~~~ii~~SAT~~~~~--~-~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 207 (466)
..+ .+.+++++|||++... + ..++.....+.+... ...+...+. ...........+..+...
T Consensus 202 ~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 281 (579)
T 3sqw_A 202 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQ 281 (579)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred HhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHH
Confidence 221 2679999999998642 2 344444333332210 011111111 111122233334444433
Q ss_pred hhc-CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccc
Q 012322 208 HVR-EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETS 286 (466)
Q Consensus 208 ~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~G 286 (466)
... ..++++||||+|++.++.+++.|.+.+. .+..+..+||+|++++|.++++.|++|+.+|||||+++++|
T Consensus 282 ~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~G 354 (579)
T 3sqw_A 282 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARG 354 (579)
T ss_dssp HHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSS
T ss_pred HhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcC
Confidence 332 5567999999999999999999988743 26778999999999999999999999999999999999999
Q ss_pred cccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchh
Q 012322 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (466)
Q Consensus 287 idip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (466)
||+|++++||+++.|. +..+|+||+|||||. .+|.|+.++++.+..
T Consensus 355 iDip~v~~VI~~~~p~------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 355 MDFPNVHEVLQIGVPS------------------ELANYIHRIGRTARSGKEGSSVLFICKDELP 401 (579)
T ss_dssp CCCTTCCEEEEESCCS------------------STTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred CCcccCCEEEEcCCCC------------------CHHHhhhhccccccCCCCceEEEEEcccHHH
Confidence 9999999999988766 566999999999999 689999999887653
No 25
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.6e-40 Score=359.07 Aligned_cols=325 Identities=16% Similarity=0.187 Sum_probs=232.0
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHh-CCccCCeee
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL-GVRLGEEVG 82 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~-~~~~~~~~g 82 (466)
++.+.+|.+++..+.+|++++++||||||||+.....+... ...+.++++++|+++++.|+++++.+.+ +..++...|
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~-~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G 116 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA-HRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITG 116 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH-HHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECS
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 45789999999999999999999999999994322222211 1246789999999999999999997765 333333333
Q ss_pred eeEeeccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc-
Q 012322 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL- 160 (466)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~- 160 (466)
+.......+|+++||+.+.+.+.... .+.++++||||||| +..+.++... +..++...+.+.++|++|||+
T Consensus 117 -----~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~-~e~ii~~l~~~v~iIlLSAT~~ 189 (997)
T 4a4z_A 117 -----DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVV-WEEVIIMLPQHVKFILLSATVP 189 (997)
T ss_dssp -----SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCC-HHHHHHHSCTTCEEEEEECCCT
T ss_pred -----CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHH-HHHHHHhcccCCCEEEEcCCCC
Confidence 22234568999999999998886554 67899999999999 4544443322 444555556689999999999
Q ss_pred ChhHHHhhcC-----CCCeEeeCCCcCceeeeecCC--------CCCch-------------------------------
Q 012322 161 DGEKVSKFFS-----NCPTLNVPGKLYPVEILHSKE--------RPTSY------------------------------- 196 (466)
Q Consensus 161 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--------~~~~~------------------------------- 196 (466)
+...+.+|++ ...++....+..|+..++... ....+
T Consensus 190 n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 269 (997)
T 4a4z_A 190 NTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGS 269 (997)
T ss_dssp THHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------------------
T ss_pred ChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccc
Confidence 5567888885 233555666666665443210 00000
Q ss_pred --------------------------------------------------HHHHHHHHHHHhhcCCCCCEEEecCCHHHH
Q 012322 197 --------------------------------------------------LESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (466)
Q Consensus 197 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~ 226 (466)
....+..++..+.....+++||||+|+++|
T Consensus 270 ~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~ 349 (997)
T 4a4z_A 270 TARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRC 349 (997)
T ss_dssp -----------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHH
Confidence 001133445555556668999999999999
Q ss_pred HHHHHHHHHhhhh------------------ccC-----------CCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEE
Q 012322 227 EKLVSKLEDKIRS------------------LDE-----------GSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFI 277 (466)
Q Consensus 227 ~~l~~~L~~~~~~------------------~~~-----------~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~il 277 (466)
+.++..|.+.... +.. ......++.+|||+|++.+|..+++.|++|.++||
T Consensus 350 e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVL 429 (997)
T 4a4z_A 350 EEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVL 429 (997)
T ss_dssp HHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEE
Confidence 9999988542000 000 00002257889999999999999999999999999
Q ss_pred EEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC---CCeEEEecCc
Q 012322 278 VSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPS 346 (466)
Q Consensus 278 vaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~ 346 (466)
|||+++++|||+|+ ..||+.+.++ ||+. ...|.|..+|.||+|||||.+ .|.||.++..
T Consensus 430 vAT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~ 491 (997)
T 4a4z_A 430 FATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYN 491 (997)
T ss_dssp EECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCS
T ss_pred EEchHhhCCCCCCC-ceEEEecccc---ccCc------cCCCCCHHHHhHHhcccccCCCCcceEEEEecCC
Confidence 99999999999999 5555566655 4433 235889999999999999974 8999999843
No 26
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=9.3e-40 Score=327.12 Aligned_cols=292 Identities=17% Similarity=0.227 Sum_probs=207.9
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHH-HHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeec-cc
Q 012322 13 IVETVEQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE-DR 90 (466)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKTt-~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~ 90 (466)
|...+..+++++++||||||||+ ++.+++..... .+.+++++.|+++++.|+++.+. +..+++..... ..
T Consensus 12 i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~ 83 (451)
T 2jlq_A 12 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLILAPTRVVAAEMEEALR-------GLPIRYQTPAVKSD 83 (451)
T ss_dssp CGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCEEECCTTCSCC
T ss_pred HHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHhc-------Cceeeeeecccccc
Confidence 33334455566999999999995 44444433222 45688999999999999988763 22233222211 12
Q ss_pred cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhcC
Q 012322 91 TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS 170 (466)
Q Consensus 91 ~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~~ 170 (466)
......+.++|++.+.+.+.....+.++++||+||+|+.....+....++.. .....+.++++||||++.+....+..
T Consensus 84 ~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~--~~~~~~~~~i~~SAT~~~~~~~~~~~ 161 (451)
T 2jlq_A 84 HTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIST--RVEMGEAAAIFMTATPPGSTDPFPQS 161 (451)
T ss_dssp CCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHH--HHHTTSCEEEEECSSCTTCCCSSCCC
T ss_pred CCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHH--hhcCCCceEEEEccCCCccchhhhcC
Confidence 2345678899999999999888889999999999999542222333332322 12234789999999998755444444
Q ss_pred CCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEE
Q 012322 171 NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVI 250 (466)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v 250 (466)
+.+.+... +..|.. .|. ...++ + ....+++||||+|+++++.+++.|++. ++.+
T Consensus 162 ~~~~~~~~-~~~p~~-~~~--~~~~~-------l-----~~~~~~~lVF~~s~~~a~~l~~~L~~~----------g~~~ 215 (451)
T 2jlq_A 162 NSPIEDIE-REIPER-SWN--TGFDW-------I-----TDYQGKTVWFVPSIKAGNDIANCLRKS----------GKRV 215 (451)
T ss_dssp SSCEEEEE-CCCCSS-CCS--SSCHH-------H-----HHCCSCEEEECSSHHHHHHHHHHHHTT----------TCCE
T ss_pred CCceEecC-ccCCch-hhH--HHHHH-------H-----HhCCCCEEEEcCCHHHHHHHHHHHHHc----------CCeE
Confidence 55544433 222211 110 00011 1 123579999999999999999999875 6778
Q ss_pred EeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccce---eeecHHHHHH
Q 012322 251 LPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDV---VQISKVQANQ 327 (466)
Q Consensus 251 ~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~---~~~s~~~~~Q 327 (466)
..+||++. .++++.|++|+.+|||||+++++|+|+|+ ++|||+|+.+...|| ..+...+.. .|.|.++|+|
T Consensus 216 ~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Q 289 (451)
T 2jlq_A 216 IQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQ 289 (451)
T ss_dssp EEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHH
T ss_pred EECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHH
Confidence 89998753 56889999999999999999999999999 999999999999887 445555554 8999999999
Q ss_pred hccccCCCC--CCeEEEecCc
Q 012322 328 RVGRAGRTR--PGKCYRLYPS 346 (466)
Q Consensus 328 r~GRaGR~~--~G~~~~l~~~ 346 (466)
|+|||||.+ +|.||.++..
T Consensus 290 r~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 290 RRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp HHTTSSCCTTCCCEEEEECSC
T ss_pred hccccCCCCCCCccEEEEeCC
Confidence 999999994 8999988753
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-39 Score=347.86 Aligned_cols=325 Identities=15% Similarity=0.196 Sum_probs=230.5
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
...+.+|.++++.+.+|++++++||||||||+.+...+.... ..+.+++++.|+++++.|+++.+.+.++ .++...|
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l-~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vglltG- 161 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTG- 161 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHHS-CEEEECS-
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHh-ccCCeEEEECChHHHHHHHHHHHHHHhC-CEEEEeC-
Confidence 357899999999999999999999999999955433332221 2467999999999999999999988887 3333333
Q ss_pred eEeeccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC-
Q 012322 84 AIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD- 161 (466)
Q Consensus 84 ~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~- 161 (466)
+.....+.+|+++|++.+.+.+.... .+.++++|||||+| +..+.++.. .+..++...+.+.+++++|||++
T Consensus 162 ----d~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH-~l~d~~rg~-~~e~il~~l~~~~~il~LSATi~n 235 (1010)
T 2xgj_A 162 ----DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGV-VWEETIILLPDKVRYVFLSATIPN 235 (1010)
T ss_dssp ----SCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGG-GGGCTTTHH-HHHHHHHHSCTTCEEEEEECCCTT
T ss_pred ----CCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechh-hhcccchhH-HHHHHHHhcCCCCeEEEEcCCCCC
Confidence 22223467899999999988876554 68899999999999 444433222 23445555556899999999995
Q ss_pred hhHHHhhcC-----CCCeEeeCCCcCceeeeecCCC----------CCch-----H------------------------
Q 012322 162 GEKVSKFFS-----NCPTLNVPGKLYPVEILHSKER----------PTSY-----L------------------------ 197 (466)
Q Consensus 162 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----------~~~~-----~------------------------ 197 (466)
...+.+|+. ...++....+..++..++.... ...+ .
T Consensus 236 ~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 315 (1010)
T 2xgj_A 236 AMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKG 315 (1010)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----------------
T ss_pred HHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccc
Confidence 456777764 2334445555555544332110 0000 0
Q ss_pred ------------HHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhh------------------ccCC-C--
Q 012322 198 ------------ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS------------------LDEG-S-- 244 (466)
Q Consensus 198 ------------~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~------------------~~~~-~-- 244 (466)
...+..++..+.....+++||||+++..|+.++..|...... +... .
T Consensus 316 ~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l 395 (1010)
T 2xgj_A 316 QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDREL 395 (1010)
T ss_dssp -------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTC
T ss_pred cccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcc
Confidence 111223334344445569999999999999999988652000 0000 0
Q ss_pred --------CCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccc
Q 012322 245 --------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLD 316 (466)
Q Consensus 245 --------~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~ 316 (466)
....++..|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+. ...||...
T Consensus 396 ~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------ 465 (1010)
T 2xgj_A 396 PQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------ 465 (1010)
T ss_dssp HHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------
T ss_pred hhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC------
Confidence 002348889999999999999999999999999999999999999999999982 12233221
Q ss_pred eeeecHHHHHHhccccCCCC---CCeEEEecCcc
Q 012322 317 VVQISKVQANQRVGRAGRTR---PGKCYRLYPST 347 (466)
Q Consensus 317 ~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 347 (466)
..|.|..+|+||+|||||.+ .|.||.++++.
T Consensus 466 ~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 466 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 24779999999999999995 59999999765
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.5e-39 Score=310.43 Aligned_cols=297 Identities=21% Similarity=0.241 Sum_probs=216.8
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhC---CccCCee
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEEV 81 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~---~~~~~~~ 81 (466)
..+++|.++++.+.+++++++.+|||+|||..+...+... +.+++++.|+++++.|+++.+.+... ..+....
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 91 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVY 91 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEEC
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEE
Confidence 4688999999999999999999999999995444333332 55789999999999999999876542 2222112
Q ss_pred eeeEee-ccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecc
Q 012322 82 GYAIRF-EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (466)
Q Consensus 82 g~~~~~-~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (466)
|..... ........+|+++|++.+.+.+.... .+.+++++|+||+|. ..+.++.. .+..+....+...+++++|||
T Consensus 92 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~~~-~~~~~~~~~~~~~~~~~~SAT 169 (337)
T 2z0m_A 92 GGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADL-MFEMGFID-DIKIILAQTSNRKITGLFSAT 169 (337)
T ss_dssp TTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHH-HHHTTCHH-HHHHHHHHCTTCSEEEEEESC
T ss_pred CCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHH-hhccccHH-HHHHHHhhCCcccEEEEEeCc
Confidence 210000 00111347899999999998876544 578899999999994 33333322 355566666667889999999
Q ss_pred cChh---HHHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHh
Q 012322 160 LDGE---KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDK 236 (466)
Q Consensus 160 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~ 236 (466)
++.. .+..++.+...+........+...+...... .. . .........++++||||+++++++.+++.|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~----~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-- 241 (337)
T 2z0m_A 170 IPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDD-WR-S----KVQALRENKDKGVIVFVRTRNRVAKLVRLFD-- 241 (337)
T ss_dssp CCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSS-SH-H----HHHHHHTCCCSSEEEECSCHHHHHHHHTTCT--
T ss_pred CCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChH-HH-H----HHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh--
Confidence 9865 3566776655554332222333333222211 11 1 1233344567899999999999999888764
Q ss_pred hhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccc
Q 012322 237 IRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLD 316 (466)
Q Consensus 237 ~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~ 316 (466)
.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 242 ------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~-------------- 295 (337)
T 2z0m_A 242 ------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ-------------- 295 (337)
T ss_dssp ------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS--------------
T ss_pred ------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC--------------
Confidence 256799999999999999999999999999999999999999999999988654
Q ss_pred eeeecHHHHHHhccccCCC-CCCeEEEecC
Q 012322 317 VVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (466)
Q Consensus 317 ~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~ 345 (466)
|..+|+||+||+||. ++|.|+.++.
T Consensus 296 ----s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 296 ----DLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp ----SHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred ----CHHHhhHhcCccccCCCCceEEEEEe
Confidence 778999999999999 7899999988
No 29
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.4e-38 Score=317.36 Aligned_cols=293 Identities=20% Similarity=0.256 Sum_probs=202.5
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEee-ccc
Q 012322 13 IVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-EDR 90 (466)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~ 90 (466)
..+.+.++++++++||||||||+. +.+++.... ..+.++++++|+++++.|+++.+. +. .+++.... ...
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~-~~~~~~lvl~Ptr~La~Q~~~~l~---g~----~v~~~~~~~~~~ 85 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAI-QQRLRTAVLAPTRVVAAEMAEALR---GL----PVRYQTSAVQRE 85 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHH-HTTCCEEEEECSHHHHHHHHHHTT---TS----CEEECC------
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEECchHHHHHHHHHHhc---Cc----eEeEEecccccC
Confidence 345678899999999999999943 344443222 245688999999999999998774 22 22222111 111
Q ss_pred cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhcC
Q 012322 91 TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS 170 (466)
Q Consensus 91 ~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~~ 170 (466)
......+.++|.+.+.+.+.....+.++++|||||+|++.........++..... ..+.++++||||++.+. ..+..
T Consensus 86 ~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~--~~~~~~il~SAT~~~~~-~~~~~ 162 (459)
T 2z83_A 86 HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE--LGEAAAIFMTATPPGTT-DPFPD 162 (459)
T ss_dssp --CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH--TTSCEEEEECSSCTTCC-CSSCC
T ss_pred CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc--cCCccEEEEEcCCCcch-hhhcc
Confidence 2344667889999999888888889999999999999654333444444444332 23789999999998542 22221
Q ss_pred -CCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeE
Q 012322 171 -NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAV 249 (466)
Q Consensus 171 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~ 249 (466)
+.++..+.. ..+. ....... ..+ ....+++||||+|+++++.+++.|++. ++.
T Consensus 163 ~~~pi~~~~~-~~~~------~~~~~~~----~~l-----~~~~~~~LVF~~s~~~~~~l~~~L~~~----------g~~ 216 (459)
T 2z83_A 163 SNAPIHDLQD-EIPD------RAWSSGY----EWI-----TEYAGKTVWFVASVKMGNEIAMCLQRA----------GKK 216 (459)
T ss_dssp CSSCEEEEEC-CCCS------SCCSSCC----HHH-----HHCCSCEEEECSCHHHHHHHHHHHHHT----------TCC
T ss_pred CCCCeEEecc-cCCc------chhHHHH----HHH-----HhcCCCEEEEeCChHHHHHHHHHHHhc----------CCc
Confidence 233332211 1110 0000001 111 113679999999999999999999886 677
Q ss_pred EEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeec--CCCCccccceeeecHHHHHH
Q 012322 250 ILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN--PSSGMYSLDVVQISKVQANQ 327 (466)
Q Consensus 250 v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~--~~~~~~~~~~~~~s~~~~~Q 327 (466)
+..+||. +|.++++.|++|+.+|||||+++++|||+|+ ++|||+|..+.+.|+ ....+..+...|.|.++|+|
T Consensus 217 v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~Q 291 (459)
T 2z83_A 217 VIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQ 291 (459)
T ss_dssp EEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHH
T ss_pred EEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHH
Confidence 8899984 7889999999999999999999999999999 999999988777765 22222222448999999999
Q ss_pred hccccCCCC--CCeEEEecCcc
Q 012322 328 RVGRAGRTR--PGKCYRLYPST 347 (466)
Q Consensus 328 r~GRaGR~~--~G~~~~l~~~~ 347 (466)
|+|||||.+ +|.||.++++.
T Consensus 292 R~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 292 RRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHTTSSCCTTCCCEEEEECSCC
T ss_pred hccccCCCCCCCCeEEEEEccc
Confidence 999999994 89999999875
No 30
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=7.8e-39 Score=329.85 Aligned_cols=297 Identities=16% Similarity=0.231 Sum_probs=216.0
Q ss_pred CCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCee
Q 012322 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (466)
Q Consensus 3 ~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~ 81 (466)
.+|++++ . ++.+.+|++++++||||||||+. +.+++..... .+.+++++.|+++++.|+.+.+. + ..+
T Consensus 172 ~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~Qi~~~l~---~----~~v 240 (618)
T 2whx_A 172 GEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAAEMEEALR---G----LPI 240 (618)
T ss_dssp CCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT---T----SCE
T ss_pred CCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHHHHHHHhc---C----Cce
Confidence 5788876 3 88899999999999999999943 3444433222 45688999999999999988764 2 223
Q ss_pred eeeEee-ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceEEEEecc
Q 012322 82 GYAIRF-EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSAT 159 (466)
Q Consensus 82 g~~~~~-~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SAT 159 (466)
++.... +........+.++|.+.+.+.+.....+.++++||+||||+. +.++... +..+....+ .+.++++||||
T Consensus 241 ~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~--~~~~~~~-~~~i~~~l~~~~~q~il~SAT 317 (618)
T 2whx_A 241 RYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT--DPCSVAA-RGYISTRVEMGEAAAIFMTAT 317 (618)
T ss_dssp EECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC--SHHHHHH-HHHHHHHHHHTSCEEEEECSS
T ss_pred eEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC--CccHHHH-HHHHHHHhcccCccEEEEECC
Confidence 332221 223345677888999999988888888999999999999954 4444222 333333222 47899999999
Q ss_pred cChhHHHhhcC-CCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhh
Q 012322 160 LDGEKVSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIR 238 (466)
Q Consensus 160 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~ 238 (466)
++.. ...+.. +...+.+... ++ ....... +..+ . +..+++||||+|+++++.+++.|++.
T Consensus 318 ~~~~-~~~~~~~~~~~~~v~~~-~~------~~~~~~l----l~~l----~-~~~~~~LVF~~s~~~a~~l~~~L~~~-- 378 (618)
T 2whx_A 318 PPGS-TDPFPQSNSPIEDIERE-IP------ERSWNTG----FDWI----T-DYQGKTVWFVPSIKAGNDIANCLRKS-- 378 (618)
T ss_dssp CTTC-CCSSCCCSSCEEEEECC-CC------SSCCSSS----CHHH----H-HCCSCEEEECSSHHHHHHHHHHHHHT--
T ss_pred Cchh-hhhhhccCCceeeeccc-CC------HHHHHHH----HHHH----H-hCCCCEEEEECChhHHHHHHHHHHHc--
Confidence 9754 333333 2333333221 11 0010111 1111 1 13679999999999999999999886
Q ss_pred hccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceee--cCCCCccccc
Q 012322 239 SLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY--NPSSGMYSLD 316 (466)
Q Consensus 239 ~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~--~~~~~~~~~~ 316 (466)
+..+..+||+ +|.++++.|++|+.+|||||+++++|||+| +++|||+|++..+.+ +...++....
T Consensus 379 --------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~ 445 (618)
T 2whx_A 379 --------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAG 445 (618)
T ss_dssp --------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEE
T ss_pred --------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcc
Confidence 6778899984 788899999999999999999999999998 999999999877665 3333454566
Q ss_pred eeeecHHHHHHhccccCCCC--CCeEEEecC
Q 012322 317 VVQISKVQANQRVGRAGRTR--PGKCYRLYP 345 (466)
Q Consensus 317 ~~~~s~~~~~Qr~GRaGR~~--~G~~~~l~~ 345 (466)
..|.|.++|+||+||+||.+ +|.||.+++
T Consensus 446 d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 446 PIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 77999999999999999993 899999997
No 31
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.6e-39 Score=339.78 Aligned_cols=343 Identities=16% Similarity=0.173 Sum_probs=189.7
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc----CcCCCcEEEEeCchhHHHHHHHHHHHHHh---CCcc
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH----GYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRL 77 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~----~~~~~~~i~~~~p~~~l~~~~~~~~~~~~---~~~~ 77 (466)
..+++|.++++.+.+|+++++++|||||||......+... ....+.+++++.|++.++.|+.+.+.+.. +..+
T Consensus 13 ~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 92 (696)
T 2ykg_A 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRV 92 (696)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCE
T ss_pred CccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceE
Confidence 4688999999999999999999999999995444333321 11123688999999999999999887766 3443
Q ss_pred CCeeeeeEeecc--ccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHh-----hh
Q 012322 78 GEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNL-----RA 148 (466)
Q Consensus 78 ~~~~g~~~~~~~--~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~-----~~ 148 (466)
+...|....... ......+|+++|||.+.+.+.... .+.++++||+||||+..-. .....++...+.. .+
T Consensus 93 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~-~~~~~i~~~~l~~~~~~~~~ 171 (696)
T 2ykg_A 93 TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ-HPYNMIMFNYLDQKLGGSSG 171 (696)
T ss_dssp EEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTT-CHHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCc-ccHHHHHHHHHHHhhcccCC
Confidence 333331110000 011358999999999999887654 4788999999999963322 2333333333322 12
Q ss_pred cCceEEEEecccC-------hhH---HHhhcC--CCCeEeeCCCc---------Cceeee--------------------
Q 012322 149 SKLKILITSATLD-------GEK---VSKFFS--NCPTLNVPGKL---------YPVEIL-------------------- 187 (466)
Q Consensus 149 ~~~~ii~~SAT~~-------~~~---~~~~~~--~~~~~~~~~~~---------~~~~~~-------------------- 187 (466)
...++++||||+. .+. +.+++. +...+...... .|....
T Consensus 172 ~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~ 251 (696)
T 2ykg_A 172 PLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 251 (696)
T ss_dssp CCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHH
Confidence 4789999999996 222 111110 11111110000 000000
Q ss_pred --------ecC---------------------------------------------------------------------
Q 012322 188 --------HSK--------------------------------------------------------------------- 190 (466)
Q Consensus 188 --------~~~--------------------------------------------------------------------- 190 (466)
+..
T Consensus 252 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~ 331 (696)
T 2ykg_A 252 DTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 331 (696)
T ss_dssp HHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhH
Confidence 000
Q ss_pred ---------------CCCCch-------------------------HHHHHHHHHHHhh----cCCCCCEEEecCCHHHH
Q 012322 191 ---------------ERPTSY-------------------------LESALKTAIDIHV----REPEGDVLIFMTGQDDI 226 (466)
Q Consensus 191 ---------------~~~~~~-------------------------~~~~~~~~~~~~~----~~~~~~~lVF~~t~~~~ 226 (466)
....+. .......+..+.. ..+++++||||++++.+
T Consensus 332 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~ 411 (696)
T 2ykg_A 332 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV 411 (696)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHH
Confidence 000000 0001112222221 23567999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCeEEEee--------cCCCCHHHHhcccCCCCC-CcceEEEEecccccccccCCeEEEEe
Q 012322 227 EKLVSKLEDKIRSLDEGSCMDAVILPL--------HGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVID 297 (466)
Q Consensus 227 ~~l~~~L~~~~~~~~~~~~~~~~v~~~--------h~~l~~~~r~~~~~~f~~-g~~~ilvaT~~~~~Gidip~v~~VI~ 297 (466)
+.+++.|.+.... ..+.+..+ ||+|+.++|.++++.|++ |+.+|||||+++++|||+|++++||+
T Consensus 412 ~~l~~~L~~~~~~------~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~ 485 (696)
T 2ykg_A 412 DALKNWIEGNPKL------SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 485 (696)
T ss_dssp HHHHHHHHHCTTC------CSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEE
T ss_pred HHHHHHHHhCCCc------cccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEE
Confidence 9999999875100 11455556 679999999999999998 99999999999999999999999999
Q ss_pred CCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchhh---------hCCCCCCCccccCCchH
Q 012322 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD---------EFLDVTVPEIQRSSLAG 368 (466)
Q Consensus 298 ~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~---------~~~~~~~p~i~~~~l~~ 368 (466)
+|.|. +..+|+||+|| ||.++|.|+.++++.+... .+.....+++.+.+.+.
T Consensus 486 ~d~p~------------------s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 546 (696)
T 2ykg_A 486 YEYVG------------------NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 546 (696)
T ss_dssp ESCC--------------------CCCC----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred eCCCC------------------CHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Confidence 88765 44478899999 9999999999999887622 12333444555555554
Q ss_pred HHHHH
Q 012322 369 SVLYL 373 (466)
Q Consensus 369 ~~l~l 373 (466)
+..++
T Consensus 547 ~~~~i 551 (696)
T 2ykg_A 547 FREKI 551 (696)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 32
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.6e-38 Score=323.19 Aligned_cols=330 Identities=15% Similarity=0.190 Sum_probs=173.1
Q ss_pred CCCCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcCcCC---CcEEEEeCchhHHHHHHHHHHHHHh---
Q 012322 1 MANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTK---SGIIGVTQPRRVAAVSVARRVAQEL--- 73 (466)
Q Consensus 1 ~~~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~~~~---~~~i~~~~p~~~l~~~~~~~~~~~~--- 73 (466)
|..+..+++|.++++.+.+|+++++.+|||||||.. +.+++....... +.+++++.|+++++.|+.+.+.+.+
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 456778899999999999999999999999999933 333333222212 6689999999999999999887765
Q ss_pred CCccCCeeeeeEeecc--ccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh--
Q 012322 74 GVRLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-- 147 (466)
Q Consensus 74 ~~~~~~~~g~~~~~~~--~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~-- 147 (466)
+..+....|....... ......+|+++||+.+.+.+.... .+.++++||+||||. ..+......++..+....
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN-TTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGG-CSTTSHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcc-cCCcchHHHHHHHHHHhhhc
Confidence 4444443442211111 112357899999999999886654 588999999999994 444444444444444331
Q ss_pred --hcCceEEEEecccChh---HHH----------hhcCCCCeEeeCCC---------cCcee--eeecCCCCCc------
Q 012322 148 --ASKLKILITSATLDGE---KVS----------KFFSNCPTLNVPGK---------LYPVE--ILHSKERPTS------ 195 (466)
Q Consensus 148 --~~~~~ii~~SAT~~~~---~~~----------~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~------ 195 (466)
....+++++|||+... .+. ..++ ...+..... ..+.. ..+.......
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHT-CSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcC-CeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 2368999999999431 111 2221 111111110 00000 0000000000
Q ss_pred ----------------------------------hH--------------------------------------------
Q 012322 196 ----------------------------------YL-------------------------------------------- 197 (466)
Q Consensus 196 ----------------------------------~~-------------------------------------------- 197 (466)
+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00
Q ss_pred --------------------------------------------------HHHHHHHHHHh----hcCCCCCEEEecCCH
Q 012322 198 --------------------------------------------------ESALKTAIDIH----VREPEGDVLIFMTGQ 223 (466)
Q Consensus 198 --------------------------------------------------~~~~~~~~~~~----~~~~~~~~lVF~~t~ 223 (466)
...+..+..+. ...+++++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 00111111111 125568999999999
Q ss_pred HHHHHHHHHHHHhhh--hccCCCCCCeEEEeecCCCCHHHHhcccCCCCC-CcceEEEEecccccccccCCeEEEEeCCc
Q 012322 224 DDIEKLVSKLEDKIR--SLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (466)
Q Consensus 224 ~~~~~l~~~L~~~~~--~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~-g~~~ilvaT~~~~~Gidip~v~~VI~~g~ 300 (466)
..++.+++.|.+... ........+.....+||+|+.++|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 999999999976411 111111124556678999999999999999999 99999999999999999999999999776
Q ss_pred ccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchhh
Q 012322 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (466)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (466)
|. +...|+||+|| ||.++|.||.++++.+.+.
T Consensus 481 p~------------------s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 481 SG------------------NVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 512 (556)
T ss_dssp CS------------------CHHHHHHC---------CCEEEEESCHHHHH
T ss_pred CC------------------CHHHHHHhcCC-CCCCCceEEEEEeCcchHH
Confidence 54 77799999999 9999999999999887654
No 33
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=6e-39 Score=331.61 Aligned_cols=315 Identities=17% Similarity=0.163 Sum_probs=213.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccce
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (466)
..++++++++||||||||+.+...+... ...++++|+++++.|+++++.+ .+..++...|.............+
T Consensus 152 ~l~rk~vlv~apTGSGKT~~al~~l~~~-----~~gl~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~iv~TpGr~~~ 225 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTYHAIQKYFSA-----KSGVYCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERVTVQPNGKQAS 225 (677)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHS-----SSEEEEESSHHHHHHHHHHHHH-TTCCEEEECSSCEECCSTTCCCCS
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhc-----CCeEEEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeEEecCCCcccc
Confidence 4578899999999999998555544433 1237779999999999999855 466555555433221111122366
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccCh-hHHHhhcCCCCeE
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG-EKVSKFFSNCPTL 175 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~-~~~~~~~~~~~~~ 175 (466)
++.+|++.+ .....++++||||+| +..+.++...+...+......+.+++++|||.+. +.+....+....+
T Consensus 226 il~~T~e~~-------~l~~~v~lvVIDEaH-~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v 297 (677)
T 3rc3_A 226 HVSCTVEMC-------SVTTPYEVAVIDEIQ-MIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEV 297 (677)
T ss_dssp EEEEEGGGC-------CSSSCEEEEEECSGG-GGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEE
T ss_pred eeEecHhHh-------hhcccCCEEEEecce-ecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEE
Confidence 777777432 245678999999999 4566666555444444444357899999999642 2233333333222
Q ss_pred eeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecC
Q 012322 176 NVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG 255 (466)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~ 255 (466)
....+..+... ....... .... .+..+|||+++++++.+++.|.+. +..+.++||
T Consensus 298 ~~~~r~~~l~~--~~~~l~~------------l~~~-~~g~iIf~~s~~~ie~la~~L~~~----------g~~v~~lHG 352 (677)
T 3rc3_A 298 RDYKRLTPISV--LDHALES------------LDNL-RPGDCIVCFSKNDIYSVSRQIEIR----------GLESAVIYG 352 (677)
T ss_dssp EECCCSSCEEE--CSSCCCS------------GGGC-CTTEEEECSSHHHHHHHHHHHHHT----------TCCCEEECT
T ss_pred EEeeecchHHH--HHHHHHH------------HHhc-CCCCEEEEcCHHHHHHHHHHHHhc----------CCCeeeeec
Confidence 22222222222 1111000 0111 234588899999999999999875 678999999
Q ss_pred CCCHHHHhcccCCCCC--CcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccC
Q 012322 256 SLPPEMQVRVFSPPPP--NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (466)
Q Consensus 256 ~l~~~~r~~~~~~f~~--g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaG 333 (466)
+|++++|.++++.|++ |+++|||||+++++|||+ ++++||++|.++. .||+..+. ...|.|.++|+||+||||
T Consensus 353 ~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAG 427 (677)
T 3rc3_A 353 SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQALQIAGRAG 427 (677)
T ss_dssp TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBT
T ss_pred cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHHHHHHhcCCC
Confidence 9999999999999998 899999999999999999 8999999999987 77776433 245899999999999999
Q ss_pred CCC----CCeEEEecCcc--chhhhCCCCCCCccccCCchHHHHHHHhC
Q 012322 334 RTR----PGKCYRLYPST--VYHDEFLDVTVPEIQRSSLAGSVLYLKSL 376 (466)
Q Consensus 334 R~~----~G~~~~l~~~~--~~~~~~~~~~~p~i~~~~l~~~~l~l~~~ 376 (466)
|.+ +|.||++++++ .+.. +.....+++.+.++....++++.+
T Consensus 428 R~g~~g~~G~v~~l~~~d~~~~~~-~~~~~~~~i~~~~l~p~~~~l~~~ 475 (677)
T 3rc3_A 428 RFSSRFKEGEVTTMNHEDLSLLKE-ILKRPVDPIRAAGLHPTAEQIEMF 475 (677)
T ss_dssp CTTSSCSSEEEEESSTTHHHHHHH-HHHSCCCCCCCEEECCCHHHHHHH
T ss_pred CCCCCCCCEEEEEEecchHHHHHH-HHhcCcchhhhccCCChHHHHHHH
Confidence 995 58999999877 4444 666777888876655544444443
No 34
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.4e-38 Score=312.95 Aligned_cols=299 Identities=12% Similarity=0.101 Sum_probs=203.2
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHH-HHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhC--CccCCee
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG--VRLGEEV 81 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt-~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~--~~~~~~~ 81 (466)
..+++|.++++.+.+|++++++||||||||. .+..++... ..+.+++++.|+++++.|+++.+.+... ..+....
T Consensus 21 ~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~ 98 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFY 98 (414)
T ss_dssp CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEE
Confidence 4578999999999999999999999999995 333333322 3467899999999999999999877533 2222222
Q ss_pred eeeEee------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccc---------cC-HHHHHHHHHHHHH
Q 012322 82 GYAIRF------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERS---------LN-TDILLGLVKRLVN 145 (466)
Q Consensus 82 g~~~~~------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~---------~~-~~~~~~~l~~i~~ 145 (466)
|..... ........+|+++||+.+.+.+.. ..+.++++||+||+|+.. ++ .++....+..+..
T Consensus 99 g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~ 177 (414)
T 3oiy_A 99 SSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFS 177 (414)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHH
Confidence 211100 000122489999999999776643 456789999999999411 11 2222222455555
Q ss_pred hhh-----------cCceEEEEecccChhH-----HHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhh
Q 012322 146 LRA-----------SKLKILITSATLDGEK-----VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHV 209 (466)
Q Consensus 146 ~~~-----------~~~~ii~~SAT~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (466)
..+ .+.+++++|||+.++. +..++. ............+...+......+.+ ..++.
T Consensus 178 ~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l----~~~l~--- 249 (414)
T 3oiy_A 178 TIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSKEKL----VELLE--- 249 (414)
T ss_dssp HHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-CCSSCCCCCCCSEEEEEESSCCHHHH----HHHHH---
T ss_pred hcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-cCcCccccccccchheeeccCHHHHH----HHHHH---
Confidence 443 5889999999953322 223332 11111111112222233222221111 11221
Q ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEE-eecCCCCHHHHhcccCCCCCCcceEEEE----ecccc
Q 012322 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVIL-PLHGSLPPEMQVRVFSPPPPNCRRFIVS----TNIAE 284 (466)
Q Consensus 210 ~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~-~~h~~l~~~~r~~~~~~f~~g~~~ilva----T~~~~ 284 (466)
. .++++||||+++++++.+++.|.+. ++.+. .+||+ +|. ++.|++|+.+|||| |++++
T Consensus 250 ~-~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~ 312 (414)
T 3oiy_A 250 I-FRDGILIFAQTEEEGKELYEYLKRF----------KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLT 312 (414)
T ss_dssp H-HCSSEEEEESSHHHHHHHHHHHHHT----------TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCC
T ss_pred H-cCCCEEEEECCHHHHHHHHHHHHHc----------CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhh
Confidence 1 2479999999999999999999886 67787 89984 444 99999999999999 99999
Q ss_pred cccccCC-eEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC-----CCeEEEecCcc
Q 012322 285 TSLTVDG-VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-----PGKCYRLYPST 347 (466)
Q Consensus 285 ~Gidip~-v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~-----~G~~~~l~~~~ 347 (466)
+|+|+|+ +++||++|.|+. .+..+|+||+||+||.+ +|.|+.++.+.
T Consensus 313 ~GiDip~~v~~VI~~~~p~~----------------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~ 365 (414)
T 3oiy_A 313 RGVDLPERIKYVIFWGTPSG----------------PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDE 365 (414)
T ss_dssp CCCCCTTTCCEEEEESCCTT----------------TCHHHHHHHHGGGCCEETTEECCEEEEEECCCH
T ss_pred ccCccccccCEEEEECCCCC----------------CCHHHHHHHhCccccCCCCCCcceEEEEEEccH
Confidence 9999999 999999887720 27789999999999973 79999999443
No 35
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.9e-37 Score=307.61 Aligned_cols=286 Identities=21% Similarity=0.258 Sum_probs=193.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHH-HHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEee-ccccCc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-EDRTSE 93 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~ 93 (466)
.+.+|++++++||||||||.. +.+++.... .++.+++++.|+++++.|+++.+. +. .+++.... ......
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~-~~~~~~lil~Ptr~La~Q~~~~l~---~~----~v~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECA-RRRLRTLVLAPTRVVLSEMKEAFH---GL----DVKFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTT---TS----CEEEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHH-hcCCeEEEEcchHHHHHHHHHHHh---cC----CeEEecccceeccCC
Confidence 467899999999999999943 344443222 235688899999999999998764 11 12221111 112233
Q ss_pred cceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHH--HHHHHHHHHHhhhcCceEEEEecccChhHHHhhcC-
Q 012322 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI--LLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS- 170 (466)
Q Consensus 94 ~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~--~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~~- 170 (466)
..-+..++.+.+...+.....+.+++++|+||+|.. +.++ ...++..+.. +.+.++++||||+++.. ..+..
T Consensus 76 ~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~--~~~~~~~~~~~~~~~~--~~~~~~l~~SAT~~~~~-~~~~~~ 150 (440)
T 1yks_A 76 REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL--DPASIAARGWAAHRAR--ANESATILMTATPPGTS-DEFPHS 150 (440)
T ss_dssp SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC--SHHHHHHHHHHHHHHH--TTSCEEEEECSSCTTCC-CSSCCC
T ss_pred ccceeeecccchhHhhhCcccccCccEEEEECcccc--CcchHHHHHHHHHHhc--cCCceEEEEeCCCCchh-hhhhhc
Confidence 444566777777777777778899999999999953 4433 3333333332 24789999999997542 22222
Q ss_pred CCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEE
Q 012322 171 NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVI 250 (466)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v 250 (466)
..++..+. ..+........+ ..+. +.++++|||||++++++.+++.|++. +..+
T Consensus 151 ~~~~~~~~-------~~~~~~~~~~~~----~~l~-----~~~~~~lVF~~s~~~a~~l~~~L~~~----------~~~v 204 (440)
T 1yks_A 151 NGEIEDVQ-------TDIPSEPWNTGH----DWIL-----ADKRPTAWFLPSIRAANVMAASLRKA----------GKSV 204 (440)
T ss_dssp SSCEEEEE-------CCCCSSCCSSSC----HHHH-----HCCSCEEEECSCHHHHHHHHHHHHHT----------TCCE
T ss_pred CCCeeEee-------eccChHHHHHHH----HHHH-----hcCCCEEEEeCCHHHHHHHHHHHHHc----------CCCE
Confidence 11211111 111111111111 1111 12579999999999999999999886 6779
Q ss_pred EeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceee-cCCCCccccceeeecHHHHHHhc
Q 012322 251 LPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY-NPSSGMYSLDVVQISKVQANQRV 329 (466)
Q Consensus 251 ~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~-~~~~~~~~~~~~~~s~~~~~Qr~ 329 (466)
..+|| ++|.++++.|++|+.+|||||+++++|||+| +++|||+|....+.| ++.+++......|.+.++|+||+
T Consensus 205 ~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~ 279 (440)
T 1yks_A 205 VVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRR 279 (440)
T ss_dssp EECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHH
T ss_pred EEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhc
Confidence 99999 5789999999999999999999999999999 999999999988777 34444555566789999999999
Q ss_pred cccCCC--CCCeEEEecC
Q 012322 330 GRAGRT--RPGKCYRLYP 345 (466)
Q Consensus 330 GRaGR~--~~G~~~~l~~ 345 (466)
||+||. .+|.||.+++
T Consensus 280 GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 280 GRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp TTSSCCTTCCCEEEEECS
T ss_pred cccCCCCCCCceEEEEec
Confidence 999996 5899999984
No 36
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.3e-37 Score=319.50 Aligned_cols=329 Identities=16% Similarity=0.199 Sum_probs=194.9
Q ss_pred CCCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcCcCC---CcEEEEeCchhHHHHHHHHHHHHHh---C
Q 012322 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTK---SGIIGVTQPRRVAAVSVARRVAQEL---G 74 (466)
Q Consensus 2 ~~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~~~~---~~~i~~~~p~~~l~~~~~~~~~~~~---~ 74 (466)
+++..+++|.++++.+.+|+++++.+|||||||.. +.+++....... +.+++++.|+++++.|+.+.+.+.+ +
T Consensus 1 s~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 1 SPLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 35678899999999999999999999999999933 333333222212 6689999999999999999887665 4
Q ss_pred CccCCeeeeeEeecc--ccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh---
Q 012322 75 VRLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR--- 147 (466)
Q Consensus 75 ~~~~~~~g~~~~~~~--~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~--- 147 (466)
..+....|....... ......+|+++||+.+.+.+.... .+.++++||+||||. ..+.......+.......
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN-TSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG-CSTTCHHHHHHHHHHHHHTSS
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc-cCCcchHHHHHHHHHHhhhcc
Confidence 444333332110000 011347999999999999886654 577899999999995 444333444444444332
Q ss_pred --hcCceEEEEecccChh----------H---HHhhcCCCCeEeeCCC---------cCce-eeeecCC-CCCc------
Q 012322 148 --ASKLKILITSATLDGE----------K---VSKFFSNCPTLNVPGK---------LYPV-EILHSKE-RPTS------ 195 (466)
Q Consensus 148 --~~~~~ii~~SAT~~~~----------~---~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~-~~~~------ 195 (466)
....+++++|||+... . +...++ ...+..... ..+. ....... ....
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALD-ASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTT-CSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcC-CeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 1367999999999431 1 112222 122221110 0000 0000000 0000
Q ss_pred -----------------------------------hH-------------------------------------------
Q 012322 196 -----------------------------------YL------------------------------------------- 197 (466)
Q Consensus 196 -----------------------------------~~------------------------------------------- 197 (466)
+.
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00
Q ss_pred ---------------------------------------------------HHHHHHHH----HHhhcCCCCCEEEecCC
Q 012322 198 ---------------------------------------------------ESALKTAI----DIHVREPEGDVLIFMTG 222 (466)
Q Consensus 198 ---------------------------------------------------~~~~~~~~----~~~~~~~~~~~lVF~~t 222 (466)
......+. ......+.+++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 00111111 11122456899999999
Q ss_pred HHHHHHHHHHHHHhhhh--ccCCCCCCeEEEeecCCCCHHHHhcccCCCCC-CcceEEEEecccccccccCCeEEEEeCC
Q 012322 223 QDDIEKLVSKLEDKIRS--LDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCG 299 (466)
Q Consensus 223 ~~~~~~l~~~L~~~~~~--~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~-g~~~ilvaT~~~~~Gidip~v~~VI~~g 299 (466)
++.++.+++.|...... .......+.....+||+|+.++|.++++.|++ |+.+|||||+++++|||+|++++||+++
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 99999999999875210 00001124455667889999999999999999 9999999999999999999999999988
Q ss_pred cccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchhh
Q 012322 300 YVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (466)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (466)
.|. +..+|+||+|| ||..+|.||.++++.+...
T Consensus 479 ~p~------------------s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 479 YVG------------------NVIKMIQTRGR-GRARDSKCFLLTSSADVIE 511 (555)
T ss_dssp CCS------------------SCCCEECSSCC-CTTTSCEEEEEESCHHHHH
T ss_pred CCC------------------CHHHHHHhcCc-CcCCCceEEEEEcCCCHHH
Confidence 765 34477799999 9999999999998887654
No 37
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-36 Score=309.18 Aligned_cols=317 Identities=17% Similarity=0.205 Sum_probs=217.5
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCC---ccCCe
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGEE 80 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~---~~~~~ 80 (466)
++.+++|.++++.+.++ ++++.+|||+|||.++..++.......+.++++++|++.++.|+.+.+.+.++. .+...
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 86 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVAL 86 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEE
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEe
Confidence 56889999999999999 889999999999955554444332234568999999999999999999888765 33222
Q ss_pred eeeeEeecc-ccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEec
Q 012322 81 VGYAIRFED-RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (466)
Q Consensus 81 ~g~~~~~~~-~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (466)
.|....... ......+|+++|++.+.+.+.... .+.++++||+|||| +..+........+.+.... ...++++|||
T Consensus 87 ~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~~~~~~~~~~~~~~~~~-~~~~~l~lTa 164 (494)
T 1wp9_A 87 TGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH-RAVGNYAYVFIAREYKRQA-KNPLVIGLTA 164 (494)
T ss_dssp CSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG-GCSTTCHHHHHHHHHHHHC-SSCCEEEEES
T ss_pred eCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCc-ccCCCCcHHHHHHHHHhcC-CCCeEEEEec
Confidence 221110000 011357899999999998876544 57889999999999 4443333333344444333 4789999999
Q ss_pred ccCh--hHHHh---hcCCCCeEeeCCCc-------Cceeeeec--CCC--------------------------------
Q 012322 159 TLDG--EKVSK---FFSNCPTLNVPGKL-------YPVEILHS--KER-------------------------------- 192 (466)
Q Consensus 159 T~~~--~~~~~---~~~~~~~~~~~~~~-------~~~~~~~~--~~~-------------------------------- 192 (466)
|+.. +.+.+ ++............ .+....+. ..+
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 9952 33333 22211111100000 00000000 000
Q ss_pred ----------------------CC------------------------------chH-----------------------
Q 012322 193 ----------------------PT------------------------------SYL----------------------- 197 (466)
Q Consensus 193 ----------------------~~------------------------------~~~----------------------- 197 (466)
.. .++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence 00 000
Q ss_pred -----------------HHHHHHHHHHhhc----CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecC-
Q 012322 198 -----------------ESALKTAIDIHVR----EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG- 255 (466)
Q Consensus 198 -----------------~~~~~~~~~~~~~----~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~- 255 (466)
...+..+..+... ..++++||||++++.++.+++.|.+. ++.+..+||
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~ 394 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----------GIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----------TCCEEEECCS
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc----------CCCcEEEecc
Confidence 0011112222222 46789999999999999999999886 677889999
Q ss_pred -------CCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHh
Q 012322 256 -------SLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQR 328 (466)
Q Consensus 256 -------~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr 328 (466)
+++.++|.++++.|++|..+|||||+++++|+|+|++++||+++.|. +...|.||
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~------------------~~~~~~Qr 456 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP------------------SAIRSIQR 456 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCH------------------HHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCC------------------CHHHHHHH
Confidence 99999999999999999999999999999999999999999987654 67789999
Q ss_pred ccccCCCCCCeEEEecCccchhh
Q 012322 329 VGRAGRTRPGKCYRLYPSTVYHD 351 (466)
Q Consensus 329 ~GRaGR~~~G~~~~l~~~~~~~~ 351 (466)
+||+||.++|.+|.++++...+.
T Consensus 457 ~GR~~R~g~g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 457 RGRTGRHMPGRVIILMAKGTRDE 479 (494)
T ss_dssp HTTSCSCCCSEEEEEEETTSHHH
T ss_pred HhhccCCCCceEEEEEecCCHHH
Confidence 99999998899999998887654
No 38
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=9.6e-37 Score=303.29 Aligned_cols=283 Identities=18% Similarity=0.226 Sum_probs=196.8
Q ss_pred cCCEEEEEcCCCCcHHHH-HHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEee-ccccCccce
Q 012322 19 QNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-EDRTSERTL 96 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~-~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 96 (466)
+|++++++||||||||.. +.+++.... ..+.+++++.|+++++.|+++.+. +. .+++.... .........
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~-~~g~~~lvl~Pt~~La~Q~~~~~~---~~----~v~~~~~~~~~~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV-KKRLRTVILAPTRVVASEMYEALR---GE----PIRYMTPAVQSERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTT---TS----CEEEC---------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEECcHHHHHHHHHHHhC---CC----eEEEEecCccccCCCCce
Confidence 478999999999999943 344442222 245689999999999999887663 22 23322221 222334566
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhcC-CCCeE
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS-NCPTL 175 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~~-~~~~~ 175 (466)
+.++|.+.+.+.+.....+.++++|||||+|............++.+. .+.+.++++||||+++. +..+.. +.++.
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~--~~~~~~~l~~SAT~~~~-~~~~~~~~~~i~ 149 (431)
T 2v6i_A 73 VDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV--SMGDAGAIFMTATPPGT-TEAFPPSNSPII 149 (431)
T ss_dssp EEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH--HTTSCEEEEEESSCTTC-CCSSCCCSSCCE
T ss_pred EEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh--hCCCCcEEEEeCCCCcc-hhhhcCCCCcee
Confidence 778899999888888778999999999999953222223334344443 22479999999999753 222221 22222
Q ss_pred eeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecC
Q 012322 176 NVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG 255 (466)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~ 255 (466)
.+... +........ +.... ..++++|||||++++++.+++.|++. +..+..+||
T Consensus 150 ~~~~~-------~~~~~~~~~--------~~~l~-~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~v~~lhg 203 (431)
T 2v6i_A 150 DEETR-------IPDKAWNSG--------YEWIT-EFDGRTVWFVHSIKQGAEIGTCLQKA----------GKKVLYLNR 203 (431)
T ss_dssp EEECC-------CCSSCCSSC--------CHHHH-SCSSCEEEECSSHHHHHHHHHHHHHT----------TCCEEEEST
T ss_pred ecccc-------CCHHHHHHH--------HHHHH-cCCCCEEEEeCCHHHHHHHHHHHHHc----------CCeEEEeCC
Confidence 22111 111111111 11111 23679999999999999999999876 677899999
Q ss_pred CCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC
Q 012322 256 SLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (466)
Q Consensus 256 ~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~ 335 (466)
+ +|.++++.|++|+.+|||||+++++|||+| +.+||++|.++.+.|| ..++......|.+.++|+||+||+||.
T Consensus 204 ~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 277 (431)
T 2v6i_A 204 K----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRN 277 (431)
T ss_dssp T----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred c----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCC
Confidence 7 577899999999999999999999999999 9999999999999988 555656667889999999999999999
Q ss_pred C-CCeEEEec
Q 012322 336 R-PGKCYRLY 344 (466)
Q Consensus 336 ~-~G~~~~l~ 344 (466)
+ .+.|+.+|
T Consensus 278 g~~~~~~~~~ 287 (431)
T 2v6i_A 278 PEKLGDIYAY 287 (431)
T ss_dssp TTCCCCEEEE
T ss_pred CCCCCeEEEE
Confidence 4 33344444
No 39
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6e-36 Score=320.29 Aligned_cols=327 Identities=15% Similarity=0.182 Sum_probs=179.1
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcCcCC---CcEEEEeCchhHHHHHHHHHHHHHh---CCc
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTK---SGIIGVTQPRRVAAVSVARRVAQEL---GVR 76 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~~~~---~~~i~~~~p~~~l~~~~~~~~~~~~---~~~ 76 (466)
...+++|.+++..+.+|+++++++|||||||.. +.+++....... +.++++++|+++++.|+.+.+.+.+ +..
T Consensus 247 ~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (797)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCce
Confidence 346789999999999999999999999999933 333332222212 6689999999999999999887765 455
Q ss_pred cCCeeeeeEeecc--ccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh----h
Q 012322 77 LGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR----A 148 (466)
Q Consensus 77 ~~~~~g~~~~~~~--~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~----~ 148 (466)
+....|....... ....+.+|+++||+.+.+.+.... .+.++++|||||||. .........++..+.... .
T Consensus 327 v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~-~~~~~~~~~i~~~~~~~~~~~~~ 405 (797)
T 4a2q_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN-TTGNHPYNVLMTRYLEQKFNSAS 405 (797)
T ss_dssp EEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGG-CSTTSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccc-cCCCccHHHHHHHHHHHhhccCC
Confidence 4444442211111 112467999999999998886543 477899999999995 444434444444444332 3
Q ss_pred cCceEEEEecccCh----------hHH---HhhcCCCCeEeeCCC-----------cCceeeeecCCCCC----------
Q 012322 149 SKLKILITSATLDG----------EKV---SKFFSNCPTLNVPGK-----------LYPVEILHSKERPT---------- 194 (466)
Q Consensus 149 ~~~~ii~~SAT~~~----------~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~---------- 194 (466)
...+++++|||+.. +.+ ...++ ...+..... .......+......
T Consensus 406 ~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~-~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (797)
T 4a2q_A 406 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (797)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHT-CSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCeEEEEcCCccccccccHHHHHHHHHHHHHhcC-CcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHH
Confidence 36899999999942 111 11221 111111100 00000000000000
Q ss_pred -------------------------c-----hH-----------------------------------------------
Q 012322 195 -------------------------S-----YL----------------------------------------------- 197 (466)
Q Consensus 195 -------------------------~-----~~----------------------------------------------- 197 (466)
. +.
T Consensus 485 ~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 564 (797)
T 4a2q_A 485 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (797)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccH
Confidence 0 00
Q ss_pred -----------------------------------------------HHHHHHHHHHh----hcCCCCCEEEecCCHHHH
Q 012322 198 -----------------------------------------------ESALKTAIDIH----VREPEGDVLIFMTGQDDI 226 (466)
Q Consensus 198 -----------------------------------------------~~~~~~~~~~~----~~~~~~~~lVF~~t~~~~ 226 (466)
...+..+..+. ...+++++||||++++.+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~ 644 (797)
T 4a2q_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (797)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHH
Confidence 00111111111 225568999999999999
Q ss_pred HHHHHHHHHhhh--hccCCCCCCeEEEeecCCCCHHHHhcccCCCCC-CcceEEEEecccccccccCCeEEEEeCCcccc
Q 012322 227 EKLVSKLEDKIR--SLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (466)
Q Consensus 227 ~~l~~~L~~~~~--~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~-g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~ 303 (466)
+.+++.|.+... ........+.....+||+|+.++|.++++.|++ |..+|||||+++++|||+|++++||+++.|.
T Consensus 645 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~- 723 (797)
T 4a2q_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG- 723 (797)
T ss_dssp HHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCCS-
T ss_pred HHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCC-
Confidence 999999987410 011001124566678999999999999999999 9999999999999999999999999977654
Q ss_pred eeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchhh
Q 012322 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (466)
Q Consensus 304 ~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (466)
+..+|+||+|| ||.++|.||.++++.+...
T Consensus 724 -----------------s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 724 -----------------NVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 753 (797)
T ss_dssp -----------------CHHHHHTC--------CCCEEEEECCHHHHH
T ss_pred -----------------CHHHHHHhcCC-CCCCCceEEEEEeCCcHHH
Confidence 77799999999 9999999999998877644
No 40
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3e-36 Score=312.48 Aligned_cols=286 Identities=20% Similarity=0.262 Sum_probs=202.0
Q ss_pred hcCCEEEEEcCCCCcHHHH-HHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEe-eccccCccc
Q 012322 18 EQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIR-FEDRTSERT 95 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~-~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 95 (466)
.++++++++||||||||+. +.+++.... ..+.+++++.|+++++.|+++.+.. .. +++... .........
T Consensus 239 ~~g~dvlv~apTGSGKTl~~ll~il~~l~-~~~~~~lilaPTr~La~Q~~~~l~~---~~----i~~~~~~l~~v~tp~~ 310 (673)
T 2wv9_A 239 KKRQLTVLDLHPGAGKTRRILPQIIKDAI-QKRLRTAVLAPTRVVAAEMAEALRG---LP----VRYLTPAVQREHSGNE 310 (673)
T ss_dssp STTCEEEECCCTTTTTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTTT---SC----CEECCC---CCCCSCC
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHH-hCCCcEEEEccHHHHHHHHHHHHhc---CC----eeeecccccccCCHHH
Confidence 3899999999999999943 444443322 2456889999999999999887642 11 121111 111223445
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhcC-CCCe
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS-NCPT 174 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~~-~~~~ 174 (466)
.+.+++.+.+.+.+.....+.++++|||||+|+.....+.....+..+.. +.+.++++||||++.. +..+.. +.++
T Consensus 311 ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~--~~~~~vl~~SAT~~~~-i~~~~~~~~~i 387 (673)
T 2wv9_A 311 IVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE--AGEAAAIFMTATPPGT-SDPFPDTNSPV 387 (673)
T ss_dssp CEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH--TTSCEEEEECSSCTTC-CCSSCCCSSCE
T ss_pred HHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc--ccCCcEEEEcCCCChh-hhhhcccCCce
Confidence 66778888888888777789999999999999542223334444444432 1478999999999754 222222 2222
Q ss_pred EeeCCCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeec
Q 012322 175 LNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLH 254 (466)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h 254 (466)
..+... +........+ .. . ....+++||||+++++++.+++.|++. ++.+..+|
T Consensus 388 ~~v~~~-------~~~~~~~~~l----~~----l-~~~~~~~lVF~~s~~~~e~la~~L~~~----------g~~v~~lH 441 (673)
T 2wv9_A 388 HDVSSE-------IPDRAWSSGF----EW----I-TDYAGKTVWFVASVKMSNEIAQCLQRA----------GKRVIQLN 441 (673)
T ss_dssp EEEECC-------CCSSCCSSCC----HH----H-HSCCSCEEEECSSHHHHHHHHHHHHTT----------TCCEEEEC
T ss_pred EEEeee-------cCHHHHHHHH----HH----H-HhCCCCEEEEECCHHHHHHHHHHHHhC----------CCeEEEeC
Confidence 222111 0001111111 11 1 124679999999999999999999875 67899999
Q ss_pred CCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccce--eecCCCCccccceeeecHHHHHHhcccc
Q 012322 255 GSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR--QYNPSSGMYSLDVVQISKVQANQRVGRA 332 (466)
Q Consensus 255 ~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~--~~~~~~~~~~~~~~~~s~~~~~Qr~GRa 332 (466)
| ++|.++++.|++|+.+|||||+++++|||+| +++|||+|.+..+ .||+..++..+...|.|.++|+||+||+
T Consensus 442 g----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRa 516 (673)
T 2wv9_A 442 R----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRV 516 (673)
T ss_dssp S----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTS
T ss_pred h----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhcc
Confidence 9 4789999999999999999999999999999 9999999977654 3566655555566789999999999999
Q ss_pred CCC--CCCeEEEecC
Q 012322 333 GRT--RPGKCYRLYP 345 (466)
Q Consensus 333 GR~--~~G~~~~l~~ 345 (466)
||. ++|.||.++.
T Consensus 517 GR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 517 GRNPSQIGDEYHYGG 531 (673)
T ss_dssp SCCSSCCCEEEEECS
T ss_pred CCCCCCCCEEEEEEe
Confidence 998 6899999974
No 41
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.7e-37 Score=325.71 Aligned_cols=320 Identities=17% Similarity=0.183 Sum_probs=198.2
Q ss_pred CCCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc-----CcCCCcEEEEeCchhHHHHHH-HHHHHHHhCC
Q 012322 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-----GYTKSGIIGVTQPRRVAAVSV-ARRVAQELGV 75 (466)
Q Consensus 2 ~~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~-----~~~~~~~i~~~~p~~~l~~~~-~~~~~~~~~~ 75 (466)
+.++.+++|.++++.+.+|+++++.+|||+|||......+... ....+.++++++|+++++.|+ .+.+.+.++.
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 3578899999999999999999999999999994433333221 112236789999999999999 9988887763
Q ss_pred --ccCCeeeeeEeec--cccCccceEEEcCHHHHHHHHhh-------CCCCCCCcEEEecCCCccccCHHH----HHHHH
Q 012322 76 --RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILS-------NPDLSPYSVIILDEAHERSLNTDI----LLGLV 140 (466)
Q Consensus 76 --~~~~~~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~-------~~~l~~~~~iIiDEah~~~~~~~~----~~~~l 140 (466)
.+....|...... .......+|+++||+.+.+.+.. ...+.++++|||||||+ ...... ...++
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~-~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH-TNKEAVYNNIMRHYL 162 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG-CBTTBSSCSHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc-cCccchHHHHHHHHH
Confidence 4433333221111 11124689999999999987732 12577899999999995 332222 22222
Q ss_pred HHHHHhhh---------cCceEEEEecccChh----------H---HHhhcCCCCeEeeCCC--------cCcee-ee-e
Q 012322 141 KRLVNLRA---------SKLKILITSATLDGE----------K---VSKFFSNCPTLNVPGK--------LYPVE-IL-H 188 (466)
Q Consensus 141 ~~i~~~~~---------~~~~ii~~SAT~~~~----------~---~~~~~~~~~~~~~~~~--------~~~~~-~~-~ 188 (466)
........ ...+++++|||+... . +...+....+...... ..|.. .. +
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 22111111 367999999999751 1 1122221111110000 00000 00 0
Q ss_pred cCCC-----------------------CCc--------------------------------------------------
Q 012322 189 SKER-----------------------PTS-------------------------------------------------- 195 (466)
Q Consensus 189 ~~~~-----------------------~~~-------------------------------------------------- 195 (466)
.... ..+
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000
Q ss_pred ----------------------------------hHHH-------------------------HHHHHHHHhhcCC-CCC
Q 012322 196 ----------------------------------YLES-------------------------ALKTAIDIHVREP-EGD 215 (466)
Q Consensus 196 ----------------------------------~~~~-------------------------~~~~~~~~~~~~~-~~~ 215 (466)
++.. ....+.......+ +++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 0000 0001111122223 689
Q ss_pred EEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCC--------CCHHHHhcccCCCCCCcceEEEEeccccccc
Q 012322 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS--------LPPEMQVRVFSPPPPNCRRFIVSTNIAETSL 287 (466)
Q Consensus 216 ~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~--------l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gi 287 (466)
+||||++++.++.+++.|.+.. .+ ...++.+..+||+ |+.++|.++++.|++|+.+|||||+++++||
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~-~l---~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENE-KF---AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSC-SC---C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred EEEEECcHHHHHHHHHHHHhCc-cc---cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 9999999999999999998741 00 0126788999999 9999999999999999999999999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecC
Q 012322 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYP 345 (466)
Q Consensus 288 dip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~ 345 (466)
|+|++++||+++.|. |..+|+||+|||||.+ +.++.+++
T Consensus 479 Dip~v~~VI~~d~p~------------------s~~~~~Qr~GRArr~g-~~~~l~~~ 517 (699)
T 4gl2_A 479 DIKECNIVIRYGLVT------------------NEIAMVQARGRARADE-STYVLVAH 517 (699)
T ss_dssp CCCSCCCCEEESCCC------------------CHHHHHHHHTTSCSSS-CEEEEEEE
T ss_pred ccccCCEEEEeCCCC------------------CHHHHHHHcCCCCCCC-ceEEEEEe
Confidence 999999999988765 7779999999987754 44444443
No 42
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=7.9e-35 Score=314.87 Aligned_cols=326 Identities=17% Similarity=0.194 Sum_probs=178.5
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHH-HHHhcCcCC---CcEEEEeCchhHHHHHHHHHHHHHh---CCc
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQ-ILHRHGYTK---SGIIGVTQPRRVAAVSVARRVAQEL---GVR 76 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~-~~~~~~~~~---~~~i~~~~p~~~l~~~~~~~~~~~~---~~~ 76 (466)
...+++|.++++.+.+|+++++.+|||||||..... ++....... +.+++++.|++.++.|+.+.+.+.+ +..
T Consensus 247 ~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (936)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 456789999999999999999999999999944333 333322222 5689999999999999999887665 444
Q ss_pred cCCeeeeeEeecc--ccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh----h
Q 012322 77 LGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR----A 148 (466)
Q Consensus 77 ~~~~~g~~~~~~~--~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~----~ 148 (466)
+....|....... ......+|+++||+.+.+.+.... .+.++++||+||||. ..........+..+.... .
T Consensus 327 v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~-~~~~~~~~~i~~~~~~~~~~~~~ 405 (936)
T 4a2w_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN-TTGNHPYNVLMTRYLEQKFNSAS 405 (936)
T ss_dssp EEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGG-CSTTCHHHHHHHHHHHHHHTTCS
T ss_pred EEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccc-cCCCccHHHHHHHHHHHhhccCC
Confidence 4444442211111 112357999999999999886543 467899999999995 443333444444444431 2
Q ss_pred cCceEEEEecccCh----------hHHH---hhcCCCCeEeeCCC---------cCceee--eecCC-------------
Q 012322 149 SKLKILITSATLDG----------EKVS---KFFSNCPTLNVPGK---------LYPVEI--LHSKE------------- 191 (466)
Q Consensus 149 ~~~~ii~~SAT~~~----------~~~~---~~~~~~~~~~~~~~---------~~~~~~--~~~~~------------- 191 (466)
...+++++|||+.. +.+. ..++ ...+..... ..+... .+...
T Consensus 406 ~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~-~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~ 484 (936)
T 4a2w_A 406 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (936)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHT-CSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CcCeEEEecCCcccccchhHHHHHHHHHHHHHhcC-CceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHH
Confidence 36899999999942 1111 1121 111111100 000000 00000
Q ss_pred ------------------------CC---------------------C--------------------------------
Q 012322 192 ------------------------RP---------------------T-------------------------------- 194 (466)
Q Consensus 192 ------------------------~~---------------------~-------------------------------- 194 (466)
.. .
T Consensus 485 ~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~ 564 (936)
T 4a2w_A 485 SETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (936)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 00 0
Q ss_pred ----chH----------------------------------------HHHHHHHHHHhh----cCCCCCEEEecCCHHHH
Q 012322 195 ----SYL----------------------------------------ESALKTAIDIHV----REPEGDVLIFMTGQDDI 226 (466)
Q Consensus 195 ----~~~----------------------------------------~~~~~~~~~~~~----~~~~~~~lVF~~t~~~~ 226 (466)
.++ ...+..+..+.. ...++++||||++++.+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~a 644 (936)
T 4a2w_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (936)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHH
Confidence 000 000111111211 24567999999999999
Q ss_pred HHHHHHHHHhh--hhccCCCCCCeEEEeecCCCCHHHHhcccCCCCC-CcceEEEEecccccccccCCeEEEEeCCcccc
Q 012322 227 EKLVSKLEDKI--RSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (466)
Q Consensus 227 ~~l~~~L~~~~--~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~-g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~ 303 (466)
+.+++.|.+.. .........+.....+||+|+.++|.++++.|++ |..+|||||+++++|||+|++++||+++.|.
T Consensus 645 e~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~- 723 (936)
T 4a2w_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG- 723 (936)
T ss_dssp HHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCCS-
T ss_pred HHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCC-
Confidence 99999998751 1111111124556678999999999999999999 9999999999999999999999999977654
Q ss_pred eeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccchh
Q 012322 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYH 350 (466)
Q Consensus 304 ~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 350 (466)
|..+|+||+|| ||..+|.||.++++.+..
T Consensus 724 -----------------s~~~~iQr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 724 -----------------NVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp -----------------CSHHHHCC--------CCCEEEEESCHHHH
T ss_pred -----------------CHHHHHHhcCC-CCCCCCEEEEEEeCCCHH
Confidence 66699999999 999999999999886553
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.4e-34 Score=313.46 Aligned_cols=268 Identities=12% Similarity=0.102 Sum_probs=182.3
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHH-HHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQL-SQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~-~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
..+++|.++++.+.+|++++++||||||||.+. +.++... ..+.+++++.|+++++.|+++++.+ ++ ..+..++.
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v~~ 153 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKIFG 153 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeEEE
Confidence 457899999999999999999999999999533 3333333 3567899999999999999999877 33 22222322
Q ss_pred eEeeccc----------cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCcccc---------C-HHHHHHHHHHH
Q 012322 84 AIRFEDR----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSL---------N-TDILLGLVKRL 143 (466)
Q Consensus 84 ~~~~~~~----------~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~---------~-~~~~~~~l~~i 143 (466)
....... .....+|+++|||.+.+.+.. ..+.++++||+||||+... + .++....++.+
T Consensus 154 l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~i 232 (1104)
T 4ddu_A 154 FYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 232 (1104)
T ss_dssp ECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHH
Confidence 1111111 123489999999999776643 3467899999999995111 1 11222225555
Q ss_pred HHhhh-----------cCceEEEEecccChhH-----HHhhcCCCCeEeeCCCcCceeeeecCCCCCchHHHHHHHHHHH
Q 012322 144 VNLRA-----------SKLKILITSATLDGEK-----VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDI 207 (466)
Q Consensus 144 ~~~~~-----------~~~~ii~~SAT~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (466)
....+ .+.+++++|||+.++. +..++. ..+.........+...+........+ ..++..
T Consensus 233 l~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-i~v~~~~~~~~~i~~~~~~~~k~~~L----~~ll~~ 307 (1104)
T 4ddu_A 233 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSKEKL----VELLEI 307 (1104)
T ss_dssp HHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-CCCCBCCCCCCCEEEEEESCCCHHHH----HHHHHH
T ss_pred HHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-EEeccCCCCcCCceeEEEecCHHHHH----HHHHHh
Confidence 55544 5889999999954322 223332 11111111112222333322221111 112221
Q ss_pred hhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEE-eecCCCCHHHHhcccCCCCCCcceEEEE----ecc
Q 012322 208 HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVIL-PLHGSLPPEMQVRVFSPPPPNCRRFIVS----TNI 282 (466)
Q Consensus 208 ~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~-~~h~~l~~~~r~~~~~~f~~g~~~ilva----T~~ 282 (466)
.++++||||++++.++.++..|... ++.+. .+||. |.+ ++.|++|+.+|||| |++
T Consensus 308 ----~~~~~LVF~~s~~~a~~l~~~L~~~----------g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdv 367 (1104)
T 4ddu_A 308 ----FRDGILIFAQTEEEGKELYEYLKRF----------KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGK 367 (1104)
T ss_dssp ----HCSSEEEEESSSHHHHHHHHHHHHT----------TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHH
T ss_pred ----cCCCEEEEECcHHHHHHHHHHHHhC----------CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCe
Confidence 2479999999999999999999886 77787 99982 445 99999999999999 999
Q ss_pred cccccccCC-eEEEEeCCccc
Q 012322 283 AETSLTVDG-VVYVIDCGYVK 302 (466)
Q Consensus 283 ~~~Gidip~-v~~VI~~g~~~ 302 (466)
+++|||+|+ |++||++|+|+
T Consensus 368 larGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 368 LTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HCCSCCCTTTCCEEEEESCCE
T ss_pred eEecCcCCCCCCEEEEECCCC
Confidence 999999999 99999999998
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-34 Score=304.40 Aligned_cols=299 Identities=14% Similarity=0.177 Sum_probs=200.9
Q ss_pred CchHhHHHHHHHHhcC------CEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhC---C
Q 012322 5 PILQYEETIVETVEQN------PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~------~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~---~ 75 (466)
....+|.++++.+.++ .+++++||||||||..+...+.... ..+.+++++.|+++++.|+++.+.+.+. .
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l-~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi 446 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNY-EAGFQTAFMVPTSILAIQHYRRTVESFSKFNI 446 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHH-HHTSCEEEECSCHHHHHHHHHHHHHHHTCSSC
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCc
Confidence 4678898888887765 5889999999999944333332221 1356899999999999999999987763 3
Q ss_pred ccCCeeeeeEeec------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc
Q 012322 76 RLGEEVGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (466)
Q Consensus 76 ~~~~~~g~~~~~~------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~ 149 (466)
.+....|.....+ .......+|+++|++.+.. ...+.+++++|+||+|..... . +..+.....
T Consensus 447 ~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~--q-----r~~l~~~~~ 515 (780)
T 1gm5_A 447 HVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVK--Q-----REALMNKGK 515 (780)
T ss_dssp CEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC------------CCCCSSSS
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHH--H-----HHHHHHhCC
Confidence 3333333211111 0113458999999987643 457889999999999942111 1 111111223
Q ss_pred CceEEEEecccChhHHH-hhcCCCCeEeeC---CCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHH
Q 012322 150 KLKILITSATLDGEKVS-KFFSNCPTLNVP---GKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (466)
Q Consensus 150 ~~~ii~~SAT~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~ 225 (466)
+.++++||||+.++.+. .++++.....+. ....++...+... +........+.... ..+++++||||+.++
T Consensus 516 ~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~---~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~ 590 (780)
T 1gm5_A 516 MVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPM---DRVNEVYEFVRQEV--MRGGQAFIVYPLIEE 590 (780)
T ss_dssp CCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCS---STHHHHHHHHHHHT--TTSCCBCCBCCCC--
T ss_pred CCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEecc---chHHHHHHHHHHHH--hcCCcEEEEecchhh
Confidence 68999999999776654 344443333322 2223444333322 22233333333222 346789999997654
Q ss_pred --------HHHHHHHHHH-hhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEE
Q 012322 226 --------IEKLVSKLED-KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVI 296 (466)
Q Consensus 226 --------~~~l~~~L~~-~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI 296 (466)
++.+++.|.+ .+ ++..+..+||+|++++|.++++.|++|+.+|||||+++++|||+|++++||
T Consensus 591 se~l~~~~a~~l~~~L~~~~~--------~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VI 662 (780)
T 1gm5_A 591 SDKLNVKSAVEMYEYLSKEVF--------PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV 662 (780)
T ss_dssp ------CHHHHHHHSGGGSCC-----------CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE
T ss_pred hhhhhHHHHHHHHHHHHhhhc--------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEE
Confidence 4555555544 21 367788999999999999999999999999999999999999999999999
Q ss_pred eCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecC
Q 012322 297 DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (466)
Q Consensus 297 ~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~ 345 (466)
+++.++ .+.+++.||+||+||. .+|.|+.+++
T Consensus 663 i~d~~r-----------------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 663 IENPER-----------------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp BCSCSS-----------------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred EeCCCC-----------------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 876543 1345788999999998 7899999997
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=6.2e-33 Score=304.17 Aligned_cols=299 Identities=17% Similarity=0.179 Sum_probs=209.7
Q ss_pred chHhHHHHHHHHhc----CC--EEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCC
Q 012322 6 ILQYEETIVETVEQ----NP--VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (466)
Q Consensus 6 i~~~q~~i~~~i~~----~~--~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 79 (466)
..++|.++++.+.+ ++ +++++||||||||..+...+.... ..+.++++++|+++++.|+++.+.+.++.. +.
T Consensus 604 ~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~-~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~-~i 681 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFANW-PV 681 (1151)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHSTTT-TC
T ss_pred CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH-HhCCeEEEEechHHHHHHHHHHHHHHhhcC-CC
Confidence 37889888887765 65 899999999999954432222221 246689999999999999999998776421 12
Q ss_pred eeeeeEeec----------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc
Q 012322 80 EVGYAIRFE----------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (466)
Q Consensus 80 ~~g~~~~~~----------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~ 149 (466)
.++....+. .......+|+++|++.+. ....+.++++|||||+|. +.... +..++..+.
T Consensus 682 ~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEaH~--~g~~~-----~~~l~~l~~ 750 (1151)
T 2eyq_A 682 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEEHR--FGVRH-----KERIKAMRA 750 (1151)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESGGG--SCHHH-----HHHHHHHHT
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CCccccccceEEEechHh--cChHH-----HHHHHHhcC
Confidence 222111110 011345899999997553 345688999999999994 33222 222223334
Q ss_pred CceEEEEecccChhHHHhhcCCCCeEee-C---CCcCceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHH
Q 012322 150 KLKILITSATLDGEKVSKFFSNCPTLNV-P---GKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (466)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~ 225 (466)
+.++++||||+.++.+...+........ . ....++......... ......+.... ..+++++||||++++
T Consensus 751 ~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~----~~i~~~il~~l--~~g~qvlvf~~~v~~ 824 (1151)
T 2eyq_A 751 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS----MVVREAILREI--LRGGQVYYLYNDVEN 824 (1151)
T ss_dssp TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCH----HHHHHHHHHHH--TTTCEEEEECCCSSC
T ss_pred CCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCH----HHHHHHHHHHH--hcCCeEEEEECCHHH
Confidence 7899999999977766554443322221 1 122333333332221 12222222222 346799999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCccccee
Q 012322 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (466)
Q Consensus 226 ~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~ 305 (466)
++.+++.|++.+ ++..+..+||+|+.++|.++++.|++|+.+|||||+++++|+|+|++++||..+.+
T Consensus 825 ~~~l~~~L~~~~--------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~---- 892 (1151)
T 2eyq_A 825 IQKAAERLAELV--------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD---- 892 (1151)
T ss_dssp HHHHHHHHHHHC--------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTT----
T ss_pred HHHHHHHHHHhC--------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCC----
Confidence 999999999874 46778999999999999999999999999999999999999999999999964421
Q ss_pred ecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 306 ~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
+.+..++.||+||+||. .+|.||.++++..
T Consensus 893 -------------~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 893 -------------HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp -------------SSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred -------------CCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 12556899999999998 6899999997653
No 46
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.2e-33 Score=304.73 Aligned_cols=261 Identities=15% Similarity=0.153 Sum_probs=170.2
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHHH-HHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhC---C----ccCC
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---V----RLGE 79 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKTt-~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~---~----~~~~ 79 (466)
++|.++++.+.+|++++++||||||||+ .++.+.... ..+.+++++.|+++++.|+++.+.+... . .++.
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~--~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~ 136 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLA--LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGY 136 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHH--TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEE
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEE
Confidence 8999999999999999999999999995 334333322 2466899999999999999998876653 2 2222
Q ss_pred eeeeeEeec----cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh--------
Q 012322 80 EVGYAIRFE----DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-------- 147 (466)
Q Consensus 80 ~~g~~~~~~----~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~-------- 147 (466)
..|...... .....+.+|+++|||.+.+.+.. +.++++||+||||+ .++.. ..++.+....
T Consensus 137 ~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~-~l~~~---~~~~~i~~~lgf~~~~~~ 209 (1054)
T 1gku_B 137 YHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE---LGHFDFIFVDDVDA-ILKAS---KNVDKLLHLLGFHYDLKT 209 (1054)
T ss_dssp CCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT---SCCCSEEEESCHHH-HHTST---HHHHHHHHHTTEEEETTT
T ss_pred EeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH---hccCCEEEEeChhh-hhhcc---ccHHHHHHHhCcchhhhh
Confidence 233211111 01112289999999999886654 67899999999995 33311 1123333222
Q ss_pred ---hcCceEEEEecccChhH--HHhhcCCCCeEeeCCCc---CceeeeecCCCCCchHHHHHHHHHHHhhcCCCCCEEEe
Q 012322 148 ---ASKLKILITSATLDGEK--VSKFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIF 219 (466)
Q Consensus 148 ---~~~~~ii~~SAT~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 219 (466)
+.+.+++++|||++... ...++.+...+.+.... ..+...+........+. .+.. ..++++|||
T Consensus 210 ~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~L~-------~ll~-~~~~~~LVF 281 (1054)
T 1gku_B 210 KSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLS-------SILE-KLGTGGIIY 281 (1054)
T ss_dssp TEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTTTH-------HHHT-TSCSCEEEE
T ss_pred hhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHHHH-------HHHh-hcCCCEEEE
Confidence 23678999999996531 11222211111222111 12223333222222222 1121 225789999
Q ss_pred cCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEE----ecccccccccCCe-EE
Q 012322 220 MTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS----TNIAETSLTVDGV-VY 294 (466)
Q Consensus 220 ~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilva----T~~~~~Gidip~v-~~ 294 (466)
|+|+++++.+++.|.+. +.+..+||++ .++++.|++|+.+|||| |+++++|||+|+| ++
T Consensus 282 ~~t~~~a~~l~~~L~~~-----------~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~ 345 (1054)
T 1gku_B 282 ARTGEEAEEIYESLKNK-----------FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRF 345 (1054)
T ss_dssp ESSHHHHHHHHHTTTTS-----------SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCE
T ss_pred EcCHHHHHHHHHHHhhc-----------cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccE
Confidence 99999999999988653 4588899998 36677899999999999 8999999999995 99
Q ss_pred EEeCCcc
Q 012322 295 VIDCGYV 301 (466)
Q Consensus 295 VI~~g~~ 301 (466)
||++|.|
T Consensus 346 VI~~~~P 352 (1054)
T 1gku_B 346 AVFVGCP 352 (1054)
T ss_dssp EEEESCC
T ss_pred EEEeCCC
Confidence 9999999
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4e-33 Score=281.94 Aligned_cols=293 Identities=17% Similarity=0.177 Sum_probs=201.5
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCc-cCCeee
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEEVG 82 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~-~~~~~g 82 (466)
+..+++|.++++.+.+++.+++++|||+|||.+...++... +.++++++|++.++.|+.+++.+ ++.. ++...|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~~g 166 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSG 166 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEBSS
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEECC
Confidence 46899999999999999999999999999995554444433 46789999999999999999877 6544 332222
Q ss_pred eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccCh
Q 012322 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (466)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~ 162 (466)
......+|+++|++.+...... ...++++||+||+| +..+..+ +.+....+ ..+++++|||+..
T Consensus 167 -------~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH-~~~~~~~-----~~~~~~~~-~~~~l~lSATp~~ 230 (472)
T 2fwr_A 167 -------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVH-HLPAESY-----VQIAQMSI-APFRLGLTATFER 230 (472)
T ss_dssp -------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGG-GTTSTTT-----HHHHHTCC-CSEEEEEESCCCC
T ss_pred -------CcCCcCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCc-CCCChHH-----HHHHHhcC-CCeEEEEecCccC
Confidence 2234578999999988765532 12468999999999 4444433 23444444 6789999999962
Q ss_pred h-----HHHhhcCCCCeEee-----CCC-c-----Cceeee--------------------------------ecC----
Q 012322 163 E-----KVSKFFSNCPTLNV-----PGK-L-----YPVEIL--------------------------------HSK---- 190 (466)
Q Consensus 163 ~-----~~~~~~~~~~~~~~-----~~~-~-----~~~~~~--------------------------------~~~---- 190 (466)
. .+..+++. ..... ... . ..+... +..
T Consensus 231 ~~~~~~~l~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 309 (472)
T 2fwr_A 231 EDGRHEILKEVVGG-KVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMA 309 (472)
T ss_dssp TTSGGGSHHHHTCC-EEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTT
T ss_pred CCCHHHHHHHHhCC-eEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHH
Confidence 1 13333321 00000 000 0 000000 000
Q ss_pred -----CCCCch------------HHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEee
Q 012322 191 -----ERPTSY------------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPL 253 (466)
Q Consensus 191 -----~~~~~~------------~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~ 253 (466)
...... .......+..+.....++++||||++++.++.+++.|. +..+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~---------------~~~~ 374 (472)
T 2fwr_A 310 SGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL---------------IPAI 374 (472)
T ss_dssp TCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT---------------CCBC
T ss_pred hccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC---------------ccee
Confidence 000000 00122333344444567899999999999999988762 3359
Q ss_pred cCCCCHHHHhcccCCCCCCcceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccC
Q 012322 254 HGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (466)
Q Consensus 254 h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaG 333 (466)
||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.+. +...|.||+||+|
T Consensus 375 ~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~------------------s~~~~~Q~~GR~~ 436 (472)
T 2fwr_A 375 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSG------------------SAREYIQRLGRIL 436 (472)
T ss_dssp CSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSS------------------CCHHHHHHHHHSB
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCC------------------CHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999966543 5669999999999
Q ss_pred CCCCC----eEEEecCccchhh
Q 012322 334 RTRPG----KCYRLYPSTVYHD 351 (466)
Q Consensus 334 R~~~G----~~~~l~~~~~~~~ 351 (466)
|.++| .+|.++++...+.
T Consensus 437 R~g~~k~~~~i~~lv~~~t~ee 458 (472)
T 2fwr_A 437 RPSKGKKEAVLYELISRGTGEV 458 (472)
T ss_dssp CCCTTTCCEEEEEEEECSCC--
T ss_pred CCCCCCceEEEEEEEeCCCchH
Confidence 99766 4666776665444
No 48
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.1e-33 Score=286.81 Aligned_cols=302 Identities=14% Similarity=0.087 Sum_probs=197.2
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeee
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~ 84 (466)
..+++|.++++.+.+++++++++|||+|||..+..++......++.++++++|+++++.|+.+.+.+.... ....++..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~-~~~~v~~~ 191 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLF-SHAMIKKI 191 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSS-CGGGEEEC
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcC-CccceEEE
Confidence 56889999999999999999999999999955443333322223459999999999999999998554222 11112111
Q ss_pred Eeec---cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 85 IRFE---DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 85 ~~~~---~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.... .......+|+++|++.+.+. ....+.++++||+||+| +.... .+..+++......+++++|||++
T Consensus 192 ~~~~~~~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H-~~~~~-----~~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 192 GGGASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECH-LATGK-----SISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp GGGCCTTGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGG-GCCHH-----HHHHHGGGCTTCCEEEEEESCGG
T ss_pred ecCCccccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCc-CCCcc-----cHHHHHHhcccCcEEEEEEeCCC
Confidence 1111 11125689999999965432 11256789999999999 33332 24445555544779999999995
Q ss_pred hhH-----HHhhcCCCCeEeeCCC-------cCceeee--ecCCCC--------CchHH------------HHHHHHHHH
Q 012322 162 GEK-----VSKFFSNCPTLNVPGK-------LYPVEIL--HSKERP--------TSYLE------------SALKTAIDI 207 (466)
Q Consensus 162 ~~~-----~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~--------~~~~~------------~~~~~~~~~ 207 (466)
... +..+++. ..+..... ..+.... ....+. ..+.. ..+...+..
T Consensus 264 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 342 (510)
T 2oca_A 264 DGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIK 342 (510)
T ss_dssp GCSSCHHHHHHHHCS-EECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHH
Confidence 431 2233321 11111110 0111110 000000 11111 111111222
Q ss_pred hhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEe-cccccc
Q 012322 208 HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST-NIAETS 286 (466)
Q Consensus 208 ~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT-~~~~~G 286 (466)
.......+++||++ .++++.+++.|.+. +..+..+||+++.++|.++++.|++|+.+||||| +++++|
T Consensus 343 ~~~~~~~~~ivf~~-~~~~~~l~~~L~~~----------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~G 411 (510)
T 2oca_A 343 LAQKDENAFVMFKH-VSHGKAIFDLIKNE----------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTG 411 (510)
T ss_dssp HHTTTCEEEEEESS-HHHHHHHHHHHHTT----------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHS
T ss_pred HHhcCCCeEEEEec-HHHHHHHHHHHHHc----------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcc
Confidence 22223445667766 88899899998875 3478899999999999999999999999999999 999999
Q ss_pred cccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCe-EEEecC
Q 012322 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGK-CYRLYP 345 (466)
Q Consensus 287 idip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~-~~~l~~ 345 (466)
+|+|++++||.++.+. +..+|.||+||+||.++|. ++.+|+
T Consensus 412 iDip~v~~vi~~~~~~------------------s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 412 ISVKNLHHVVLAHGVK------------------SKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCCSEEEEEESSCCC------------------SCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccccCcEEEEeCCCC------------------CHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999977654 5558999999999995543 566654
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.97 E-value=5.7e-31 Score=271.14 Aligned_cols=306 Identities=16% Similarity=0.164 Sum_probs=203.0
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH---HHHhCCccCCee
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEV 81 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~---~~~~~~~~~~~~ 81 (466)
+..|...+..+.+|+ +..++||+||| ..+|.++... .+..++++.|++.||.|.++.+ .+.+|++++..+
T Consensus 85 t~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~ 159 (844)
T 1tf5_A 85 FKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNL 159 (844)
T ss_dssp CHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred cHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 567888888889998 88999999999 3444443322 2557889999999999987765 455666665555
Q ss_pred eeeEeeccccCccceEEEcCHHHH-HHHHhhC-------CCCCCCcEEEecCCCcccc-CHH---------------HHH
Q 012322 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLSPYSVIILDEAHERSL-NTD---------------ILL 137 (466)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l-~~~~~~~-------~~l~~~~~iIiDEah~~~~-~~~---------------~~~ 137 (466)
|............++|+|+|||.+ ..++... ..+.++.++|+|||| +.+ +.. +..
T Consensus 160 gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD-~mLiDea~tplIisg~~~~~~~~~~ 238 (844)
T 1tf5_A 160 NSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVD-SILIDEARTPLIISGQAAKSTKLYV 238 (844)
T ss_dssp TTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHH-HHHTTTTTCEEEEEEEEECCCHHHH
T ss_pred CCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchh-hhhhhccccchhhcCCcccchhHHH
Confidence 422111122223589999999999 4444322 356889999999999 444 432 333
Q ss_pred HHHHHHHHhhh---------cCceEE-----------------EEecccCh--hHHH------hhcC-CCCeE-------
Q 012322 138 GLVKRLVNLRA---------SKLKIL-----------------ITSATLDG--EKVS------KFFS-NCPTL------- 175 (466)
Q Consensus 138 ~~l~~i~~~~~---------~~~~ii-----------------~~SAT~~~--~~~~------~~~~-~~~~~------- 175 (466)
.+..+....+ ++.++. ++|||.+. ..+. .+|. +...+
T Consensus 239 -~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ 317 (844)
T 1tf5_A 239 -QANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVV 317 (844)
T ss_dssp -HHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEE
T ss_pred -HHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeE
Confidence 3566666554 245555 77888642 1111 1121 11111
Q ss_pred ee--------CCCcCc--------------e--------eee----------------------------------ecCC
Q 012322 176 NV--------PGKLYP--------------V--------EIL----------------------------------HSKE 191 (466)
Q Consensus 176 ~~--------~~~~~~--------------~--------~~~----------------------------------~~~~ 191 (466)
.+ +++.++ + .+. ..+.
T Consensus 318 ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPt 397 (844)
T 1tf5_A 318 IVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPT 397 (844)
T ss_dssp EBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCC
T ss_pred EeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecC
Confidence 00 000000 0 000 0000
Q ss_pred C----C---C----chHHHHHHHHHHHhhc--CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCC
Q 012322 192 R----P---T----SYLESALKTAIDIHVR--EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLP 258 (466)
Q Consensus 192 ~----~---~----~~~~~~~~~~~~~~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~ 258 (466)
. . . .........+...... ..+.++||||+|++.++.++..|.+. ++.+..+||++.
T Consensus 398 n~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~----------gi~~~vLhg~~~ 467 (844)
T 1tf5_A 398 NRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK----------GIPHQVLNAKNH 467 (844)
T ss_dssp SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT----------TCCCEEECSSCH
T ss_pred CCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC----------CCCEEEeeCCcc
Confidence 0 0 0 0112233333332221 23468999999999999999999886 778888999999
Q ss_pred HHHHhcccCCCCCCcceEEEEecccccccccC--------CeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhcc
Q 012322 259 PEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD--------GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVG 330 (466)
Q Consensus 259 ~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip--------~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~G 330 (466)
..+|..+.++++.| .|+||||+|+||+||+ ++.+||++++|. |...|.||+|
T Consensus 468 ~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~------------------s~r~y~hr~G 527 (844)
T 1tf5_A 468 EREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHE------------------SRRIDNQLRG 527 (844)
T ss_dssp HHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCS------------------SHHHHHHHHT
T ss_pred HHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCC------------------CHHHHHhhcC
Confidence 99998888888776 6999999999999999 899999999876 7779999999
Q ss_pred ccCCC-CCCeEEEecCccch
Q 012322 331 RAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 331 RaGR~-~~G~~~~l~~~~~~ 349 (466)
|+||. .+|.++.+++.++.
T Consensus 528 RTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 528 RSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TSSGGGCCEEEEEEEETTSS
T ss_pred ccccCCCCCeEEEEecHHHH
Confidence 99999 89999999877653
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=1.4e-30 Score=270.20 Aligned_cols=301 Identities=15% Similarity=0.135 Sum_probs=176.8
Q ss_pred CCchHhHHHHHHHHhc-----CCEEEEEcCCCCcHHHHHHHHHHhc-CcC-------CCcEEEEeCchhHHHHHHH-HHH
Q 012322 4 LPILQYEETIVETVEQ-----NPVVVVIGETGSGKSTQLSQILHRH-GYT-------KSGIIGVTQPRRVAAVSVA-RRV 69 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~-----~~~~ii~apTGsGKTt~~~~~~~~~-~~~-------~~~~i~~~~p~~~l~~~~~-~~~ 69 (466)
...+.+|.+.++.+.+ ++.+++++|||||||..+..++... ... .+.+++++.|+++++.|+. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3577899998887764 4678999999999995444443322 111 4568999999999999988 433
Q ss_pred HHHhCCccCCeeeeeEeeccccCccceEEEcCHHHHHHHHh-----hCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 70 AQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREIL-----SNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 70 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~-----~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
. .++.. ++. ..........+|+++|++.+..... .......+++||+|||| +....+ ...++.++
T Consensus 257 ~-~~~~~----~~~--~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~il 326 (590)
T 3h1t_A 257 T-PFGDA----RHK--IEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREIL 326 (590)
T ss_dssp T-TTCSS----EEE--CCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHH
T ss_pred H-hcchh----hhh--hhccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHHH
Confidence 2 22221 110 1122234568999999999877642 22235678999999999 554332 12345555
Q ss_pred HhhhcCceEEEEecccCh---hHHHhhcCCCCeEeeC-------CCcCceeeeec--CC---------------------
Q 012322 145 NLRASKLKILITSATLDG---EKVSKFFSNCPTLNVP-------GKLYPVEILHS--KE--------------------- 191 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~~~~--~~--------------------- 191 (466)
...+ ..+++++|||+.. .....+|+... .... +...+...... ..
T Consensus 327 ~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~-~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (590)
T 3h1t_A 327 EYFE-PAFQIGMTATPLREDNRDTYRYFGNPI-YTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPD 404 (590)
T ss_dssp HHST-TSEEEEEESSCSCTTTHHHHHHSCSCS-EEECHHHHHHHTSSCCEEEEEEEETTCC-------------------
T ss_pred HhCC-cceEEEeccccccccchhHHHHcCCce-EecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccc
Confidence 5555 6789999999853 23556665422 1110 00011110000 00
Q ss_pred ---CCCch---------HHHHHHHHHHHhh-cCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCC
Q 012322 192 ---RPTSY---------LESALKTAIDIHV-REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLP 258 (466)
Q Consensus 192 ---~~~~~---------~~~~~~~~~~~~~-~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~ 258 (466)
...+. .......+..... ..+.+++||||+++++|+.+++.|.+........ ....+..+||+++
T Consensus 405 ~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~--~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 405 GEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRK--HPDYVARVTSEEG 482 (590)
T ss_dssp ----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT--CTTSEEECSSTTH
T ss_pred ccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhcc--CCCeEEEEeCCCh
Confidence 00000 0111122222221 2455799999999999999999998864332111 1223667899875
Q ss_pred HHHHhcccCCCCCCcce---EEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC
Q 012322 259 PEMQVRVFSPPPPNCRR---FIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (466)
Q Consensus 259 ~~~r~~~~~~f~~g~~~---ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~ 335 (466)
++|.++++.|++|+.+ |+|||+++++|+|+|++++||+++.+. |...|+||+||+||.
T Consensus 483 -~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~------------------s~~~~~Q~iGR~~R~ 543 (590)
T 3h1t_A 483 -KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVN------------------SMSEFKQIVGRGTRL 543 (590)
T ss_dssp -HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCC------------------CHHHHHHHHTTSCCC
T ss_pred -HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCC------------------ChHHHHHHHhhhccc
Confidence 4799999999998766 889999999999999999999865543 778999999999998
Q ss_pred CC
Q 012322 336 RP 337 (466)
Q Consensus 336 ~~ 337 (466)
++
T Consensus 544 ~~ 545 (590)
T 3h1t_A 544 RE 545 (590)
T ss_dssp BG
T ss_pred Cc
Confidence 54
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.97 E-value=1.4e-29 Score=260.04 Aligned_cols=305 Identities=15% Similarity=0.117 Sum_probs=185.7
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH-HH-HHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH---HHHhCCccCCee
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEV 81 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-t~-~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~---~~~~~~~~~~~~ 81 (466)
+..|......+.+|+ +..++|||||| ++ +|.+.... .+..++++.|++.||.|.++.+ .+.++++++...
T Consensus 76 ~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~ 150 (853)
T 2fsf_A 76 FDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINL 150 (853)
T ss_dssp CHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred ChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 567777777888888 88999999999 33 44433322 2457889999999999987765 455666665555
Q ss_pred eeeEeeccccCccceEEEcCHHHH-HHHHhhC-------CCCCCCcEEEecCCCcccc-CH---------------HHHH
Q 012322 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLSPYSVIILDEAHERSL-NT---------------DILL 137 (466)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l-~~~~~~~-------~~l~~~~~iIiDEah~~~~-~~---------------~~~~ 137 (466)
|............++|+|+|||.+ ..++... ..+.++.++|+|||| +.+ +. ++..
T Consensus 151 GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD-~mLiD~a~tpLIiSg~~~~~~~~y~ 229 (853)
T 2fsf_A 151 PGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVD-SILIDEARTPLIISGPAEDSSEMYK 229 (853)
T ss_dssp TTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHH-HHTTTTTTCEEEEEEC---------
T ss_pred CCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchH-HHHHhcCcccccccCCCccchhHHH
Confidence 522111112223589999999998 5655433 356889999999999 444 32 1222
Q ss_pred HHHHHHHHhhhc--------------------CceEE------------------------EEecccCh--hHHH-----
Q 012322 138 GLVKRLVNLRAS--------------------KLKIL------------------------ITSATLDG--EKVS----- 166 (466)
Q Consensus 138 ~~l~~i~~~~~~--------------------~~~ii------------------------~~SAT~~~--~~~~----- 166 (466)
. +..+....+. +.++. ++|||.+. ..+.
T Consensus 230 ~-i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A 308 (853)
T 2fsf_A 230 R-VNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRA 308 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H-HHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHH
Confidence 2 3333333321 22332 77888642 1111
Q ss_pred -hhcC--------CCCe-----------------------------EeeCCCcCce-eeee-------------------
Q 012322 167 -KFFS--------NCPT-----------------------------LNVPGKLYPV-EILH------------------- 188 (466)
Q Consensus 167 -~~~~--------~~~~-----------------------------~~~~~~~~~~-~~~~------------------- 188 (466)
.+|. +..+ +.+....... .+.+
T Consensus 309 ~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~t 388 (853)
T 2fsf_A 309 HALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADT 388 (853)
T ss_dssp ------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCC
T ss_pred HHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchh
Confidence 1110 0000 0010000000 0000
Q ss_pred ---------------cCCC----C---C----chHHHHHHHHHHHhhc--CCCCCEEEecCCHHHHHHHHHHHHHhhhhc
Q 012322 189 ---------------SKER----P---T----SYLESALKTAIDIHVR--EPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (466)
Q Consensus 189 ---------------~~~~----~---~----~~~~~~~~~~~~~~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~ 240 (466)
.+.. . . .....+...+...... ..+.++||||+|++.++.+++.|.+.
T Consensus 389 e~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~---- 464 (853)
T 2fsf_A 389 EAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKA---- 464 (853)
T ss_dssp CHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHC----
Confidence 0000 0 0 0123344444443321 34568999999999999999999987
Q ss_pred cCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCC-----------------------------
Q 012322 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG----------------------------- 291 (466)
Q Consensus 241 ~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~----------------------------- 291 (466)
++.+..+||++...++..+.++|++| .|+||||+|+||+||+.
T Consensus 465 ------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (853)
T 2fsf_A 465 ------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVR 536 (853)
T ss_dssp ------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHH
T ss_pred ------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhh
Confidence 77888899999888898889999988 69999999999999997
Q ss_pred ---e-----EEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 292 ---V-----VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 292 ---v-----~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
| .+||++++|. |...|.||+||+||. .||.+..+.+.++
T Consensus 537 ~~~V~~~GGl~VI~te~pe------------------s~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 537 HDAVLEAGGLHIIGTERHE------------------SRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHTTSEEEEESSCCS------------------SHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhHHHhcCCcEEEEccCCC------------------CHHHHHhhccccccCCCCeeEEEEecccH
Confidence 4 6999988876 777999999999999 8999988887665
No 52
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.96 E-value=6.3e-29 Score=255.54 Aligned_cols=306 Identities=19% Similarity=0.154 Sum_probs=204.8
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH---HHHhCCccCCee
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEV 81 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT--t~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~---~~~~~~~~~~~~ 81 (466)
+..|...+..+.+|+ +..++||+||| ..+|.++... .+..+.++.|++.|+.|.++.+ .+.+|++++...
T Consensus 113 ~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~ 187 (922)
T 1nkt_A 113 FDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVIL 187 (922)
T ss_dssp CHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred CHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 567777777888888 88999999999 3344443333 2457889999999999887765 455666665555
Q ss_pred eeeEeeccccCccceEEEcCHHHH-HHHHhhC-------CCCCCCcEEEecCCCcccc-C---------------HHHHH
Q 012322 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLSPYSVIILDEAHERSL-N---------------TDILL 137 (466)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l-~~~~~~~-------~~l~~~~~iIiDEah~~~~-~---------------~~~~~ 137 (466)
|............++|+|+||+.+ ...+... ..+.++.++|||||| +.+ + .++..
T Consensus 188 gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaD-smLiDeartPLiiSg~~~~~~~~y~ 266 (922)
T 1nkt_A 188 ATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVD-SILIDEARTPLIISGPADGASNWYT 266 (922)
T ss_dssp TTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHH-HHHTTGGGSCEEEEEECCCCHHHHH
T ss_pred CCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChH-HHHHhcCccceeecCCCCcchhHHH
Confidence 422111112223589999999998 4555432 356789999999999 444 3 24444
Q ss_pred HHHHHHHHhhh---------cCceEE-----------------EEecccCh--hHHH------hhcC--------CCCeE
Q 012322 138 GLVKRLVNLRA---------SKLKIL-----------------ITSATLDG--EKVS------KFFS--------NCPTL 175 (466)
Q Consensus 138 ~~l~~i~~~~~---------~~~~ii-----------------~~SAT~~~--~~~~------~~~~--------~~~~~ 175 (466)
. +..+....+ ++.++. ++|||.+. ..+. .+|. +..++
T Consensus 267 ~-i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vv 345 (922)
T 1nkt_A 267 E-FARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVL 345 (922)
T ss_dssp H-HHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEE
T ss_pred H-HHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceE
Confidence 4 566666664 466777 88999753 1111 1221 11111
Q ss_pred eeC---CCcCc-----------------e----------eee----------------------------------ecCC
Q 012322 176 NVP---GKLYP-----------------V----------EIL----------------------------------HSKE 191 (466)
Q Consensus 176 ~~~---~~~~~-----------------~----------~~~----------------------------------~~~~ 191 (466)
.+. ++..+ + .+. ..+.
T Consensus 346 iVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPt 425 (922)
T 1nkt_A 346 IVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPT 425 (922)
T ss_dssp EBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCC
T ss_pred EEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCC
Confidence 111 11000 0 000 0000
Q ss_pred C----C---C----chHHHHHHHHHHHhhc--CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCC
Q 012322 192 R----P---T----SYLESALKTAIDIHVR--EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLP 258 (466)
Q Consensus 192 ~----~---~----~~~~~~~~~~~~~~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~ 258 (466)
. . . .....+...+...... ..+.++||||+|++.++.+++.|.+. ++.+..+||+..
T Consensus 426 n~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~----------Gi~~~vLnak~~ 495 (922)
T 1nkt_A 426 NMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR----------RIPHNVLNAKYH 495 (922)
T ss_dssp SSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT----------TCCCEEECSSCH
T ss_pred CCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC----------CCCEEEecCChh
Confidence 0 0 0 0012233333332221 23458999999999999999999987 778888999998
Q ss_pred HHHHhcccCCCCCCcceEEEEecccccccccCCe----------------------------------------------
Q 012322 259 PEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGV---------------------------------------------- 292 (466)
Q Consensus 259 ~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~v---------------------------------------------- 292 (466)
..++..+.++++.| .|+||||+++||+||+.+
T Consensus 496 ~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (922)
T 1nkt_A 496 EQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKE 573 (922)
T ss_dssp HHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhH
Confidence 88888888999988 699999999999999975
Q ss_pred ------EEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch
Q 012322 293 ------VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (466)
Q Consensus 293 ------~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 349 (466)
.+||++++|. |...|.||+||+||. .||.+..+.+.++.
T Consensus 574 V~~~GGlhVI~te~pe------------------s~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 574 VIEAGGLYVLGTERHE------------------SRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTTSEEEEECSCCS------------------SHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHhcCCcEEEeccCCC------------------CHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 6999988866 777999999999999 79999888876653
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.95 E-value=3e-28 Score=263.85 Aligned_cols=314 Identities=12% Similarity=0.092 Sum_probs=201.0
Q ss_pred CCchHhHHHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHhc-CcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCe
Q 012322 4 LPILQYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~--~~~~ii~apTGsGKTt~~~~~~~~~-~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 80 (466)
...+++|.+++..+.. +..+++.++||+|||..+..++... ......++++++|+ .++.|+...+.+.++..+...
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 5678999999987765 3478889999999995544444332 22233479999999 888999999988887654333
Q ss_pred eeeeEee----ccccCccceEEEcCHHHHHHHHhh--CCCCCCCcEEEecCCCccccCHH----HHHHHHHHHHHhhhcC
Q 012322 81 VGYAIRF----EDRTSERTLIKYLTDGVLLREILS--NPDLSPYSVIILDEAHERSLNTD----ILLGLVKRLVNLRASK 150 (466)
Q Consensus 81 ~g~~~~~----~~~~~~~~~i~~~T~g~l~~~~~~--~~~l~~~~~iIiDEah~~~~~~~----~~~~~l~~i~~~~~~~ 150 (466)
.+..... ........+|+++|++.+.+.... .....++++||+||+|. ..+.. .....++.+. ...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~-~kn~~~~~s~~~~~l~~L~---~~~ 306 (968)
T 3dmq_A 231 DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH-LVWSEDAPSREYQAIEQLA---EHV 306 (968)
T ss_dssp CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC-CCCBTTBCCHHHHHHHHHH---TTC
T ss_pred ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHh-hcCCCCcchHHHHHHHHHh---hcC
Confidence 2211000 011223578999999987542110 01244789999999995 32211 1122233332 224
Q ss_pred ceEEEEecccChhH------HHhhcC-----CC-----------------------------------------------
Q 012322 151 LKILITSATLDGEK------VSKFFS-----NC----------------------------------------------- 172 (466)
Q Consensus 151 ~~ii~~SAT~~~~~------~~~~~~-----~~----------------------------------------------- 172 (466)
.+++++|||+-... +..++. +.
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 56999999983211 001100 00
Q ss_pred ----------------------------CeEeeCCC----cCceee---eecCCC-------------------------
Q 012322 173 ----------------------------PTLNVPGK----LYPVEI---LHSKER------------------------- 192 (466)
Q Consensus 173 ----------------------------~~~~~~~~----~~~~~~---~~~~~~------------------------- 192 (466)
.++....+ .++... .....+
T Consensus 387 ~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (968)
T 3dmq_A 387 QAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARD 466 (968)
T ss_dssp GGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHH
T ss_pred hcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhh
Confidence 00000000 000000 000000
Q ss_pred ----------------CCchHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCC
Q 012322 193 ----------------PTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS 256 (466)
Q Consensus 193 ----------------~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~ 256 (466)
.......+...+..+.....++++||||+++..++.+++.|... .++.+..+||+
T Consensus 467 ~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~---------~g~~~~~lhG~ 537 (968)
T 3dmq_A 467 MLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER---------EGIRAAVFHEG 537 (968)
T ss_dssp HHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT---------TCCCEEEECTT
T ss_pred hcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH---------cCCcEEEEeCC
Confidence 00001123344444444466789999999999999999999864 27789999999
Q ss_pred CCHHHHhcccCCCCCCc--ceEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCC
Q 012322 257 LPPEMQVRVFSPPPPNC--RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR 334 (466)
Q Consensus 257 l~~~~r~~~~~~f~~g~--~~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR 334 (466)
|+.++|.++++.|++|+ .+|||||+++++|+|+|++++||+++.|. +...|.||+||+||
T Consensus 538 ~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~------------------~~~~~~Q~~GR~~R 599 (968)
T 3dmq_A 538 MSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPF------------------NPDLLEQRIGRLDR 599 (968)
T ss_dssp SCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCS------------------SHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCC------------------CHHHHHHHhhcccc
Confidence 99999999999999998 99999999999999999999999977653 77799999999999
Q ss_pred C-CCC--eEEEecCccch
Q 012322 335 T-RPG--KCYRLYPSTVY 349 (466)
Q Consensus 335 ~-~~G--~~~~l~~~~~~ 349 (466)
. +.| ..|.++.+...
T Consensus 600 ~Gq~~~v~v~~~~~~~t~ 617 (968)
T 3dmq_A 600 IGQAHDIQIHVPYLEKTA 617 (968)
T ss_dssp SSSCSCCEEEEEEETTSH
T ss_pred CCCCceEEEEEecCCChH
Confidence 8 444 45555555443
No 54
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=4.2e-28 Score=217.52 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=140.4
Q ss_pred HHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEec
Q 012322 202 KTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN 281 (466)
Q Consensus 202 ~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~ 281 (466)
..+..++....++++||||+++++++.+++.|.+. ++.+..+||+|++++|.++++.|++|+.+|||||+
T Consensus 20 ~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 20 EVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp HHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH----------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 33344444455789999999999999999999886 78899999999999999999999999999999999
Q ss_pred ccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh---------
Q 012322 282 IAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD--------- 351 (466)
Q Consensus 282 ~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~--------- 351 (466)
++++|+|+|++++||++|.|. +..+|+||+||+||. ++|.|+.++++.+...
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~------------------~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPD------------------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCS------------------SHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHS
T ss_pred hhhcCCCCccCcEEEECCCCc------------------CHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhc
Confidence 999999999999999988765 778999999999999 6899999999887321
Q ss_pred ----hCCCCCCCccccCCchHHHHHHHhCCCCCCccccc-----cCCCCCCHHHHHHHHHHH
Q 012322 352 ----EFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKF-----DFLDPPSSESLEDALKQL 404 (466)
Q Consensus 352 ----~~~~~~~p~i~~~~l~~~~l~l~~~~~~~~~~~~~-----~~~~~p~~~~~~~~l~~L 404 (466)
.+.....+++.+..+..+++.++.+...+ ...| +++++|+++.+..|+..|
T Consensus 152 ~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 152 RRFKRVNPPTPEEVLEAKWRHLLARLARVPEKD--YRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp SCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHH--HTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 14445556677778888888888776543 2333 567788888888887655
No 55
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.3e-26 Score=208.96 Aligned_cols=172 Identities=41% Similarity=0.642 Sum_probs=147.7
Q ss_pred CCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcC----CCcEEEEeCchhHHHHHHHHHHHHHhCCccC
Q 012322 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT----KSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (466)
Q Consensus 3 ~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~----~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 78 (466)
.+|++.+|++++..+.+|++++++|||||||||++..++...... .+..+++..|+++++.|+++++.+.++..++
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 589999999999999999999999999999998777666543221 1338899999999999999999999988888
Q ss_pred CeeeeeEeeccccC-ccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 79 EEVGYAIRFEDRTS-ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 79 ~~~g~~~~~~~~~~-~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
..+|+..+.+.... .+.+|+++|||++.+.+.. .+.++++||+||+|+++++.++....++.+....+ +.+++++|
T Consensus 139 ~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~S 215 (235)
T 3llm_A 139 KSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMS 215 (235)
T ss_dssp SSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEE
T ss_pred ceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEe
Confidence 88998777665553 6789999999999998866 48899999999999767899998888888888776 89999999
Q ss_pred cccChhHHHhhcCCCCeEee
Q 012322 158 ATLDGEKVSKFFSNCPTLNV 177 (466)
Q Consensus 158 AT~~~~~~~~~~~~~~~~~~ 177 (466)
||++.+.+.+||.+++++.+
T Consensus 216 AT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 216 ATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp CSSCCHHHHHHTTSCCCEEC
T ss_pred cCCCHHHHHHHcCCCCEEeC
Confidence 99999889999998887653
No 56
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=3.9e-27 Score=220.96 Aligned_cols=169 Identities=18% Similarity=0.210 Sum_probs=140.4
Q ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEeccccccccc
Q 012322 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (466)
Q Consensus 210 ~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi 289 (466)
...++++||||+|+++++.+++.|.+. ++.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+
T Consensus 25 ~~~~~~~LVF~~t~~~~~~l~~~L~~~----------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi 94 (300)
T 3i32_A 25 VASPDRAMVFTRTKAETEEIAQGLLRL----------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDI 94 (300)
T ss_dssp HHCCSSEEEECSSHHHHHHHHHHHHTT----------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTC
T ss_pred hcCCCCEEEEECCHHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccc
Confidence 334789999999999999999999875 7889999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccch--------------hhhCC
Q 012322 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY--------------HDEFL 354 (466)
Q Consensus 290 p~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~--------------~~~~~ 354 (466)
|++++||++|+|. +..+|+||+||+||. .+|.||.++++.+. .. +.
T Consensus 95 ~~v~~VI~~d~p~------------------s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~-~~ 155 (300)
T 3i32_A 95 PQVDLVVHYRMPD------------------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKR-VN 155 (300)
T ss_dssp CCCSEEEESSCCS------------------STTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEE-CC
T ss_pred cceeEEEEcCCCC------------------CHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceE-eC
Confidence 9999999999876 566999999999999 69999999998872 22 45
Q ss_pred CCCCCccccCCchHHHHHHHhCCCCCCccccc-----cCCCCCCHHHHHHHHHHHHHccc
Q 012322 355 DVTVPEIQRSSLAGSVLYLKSLDLSDINVLKF-----DFLDPPSSESLEDALKQLYLIDA 409 (466)
Q Consensus 355 ~~~~p~i~~~~l~~~~l~l~~~~~~~~~~~~~-----~~~~~p~~~~~~~~l~~L~~~~~ 409 (466)
....+++.+..+..+++.++.++..+ ...| +++++|+.+.+..++..|.....
T Consensus 156 ~~~~~ei~~~~~~~~~~~l~~~~~~~--~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 156 PPTPEEVLEAKWRHLLARLARVPEKD--YRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCHHH--HHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHhcchhh--HHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 55667888888999999888765433 3333 56778999999999999965543
No 57
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.93 E-value=4.1e-25 Score=237.68 Aligned_cols=313 Identities=10% Similarity=0.014 Sum_probs=191.8
Q ss_pred CchHhHHHHHHHHhc--------------CCEEEEEcCCCCcHHHHHHHHHHhcCc-CCCcEEEEeCchhHHHHHHHHHH
Q 012322 5 PILQYEETIVETVEQ--------------NPVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRV 69 (466)
Q Consensus 5 pi~~~q~~i~~~i~~--------------~~~~ii~apTGsGKTt~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~ 69 (466)
....+|.+.++.+.+ ++..+++++||||||..+..++..... ....++++++|++.++.|+.+.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f 350 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEY 350 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHH
Confidence 356788887776654 367899999999999433333333222 23358999999999999998877
Q ss_pred HHHhCCccCCeeeeeEe-eccc-cCccceEEEcCHHHHHHHHhhCC---CCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 70 AQELGVRLGEEVGYAIR-FEDR-TSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 70 ~~~~~~~~~~~~g~~~~-~~~~-~~~~~~i~~~T~g~l~~~~~~~~---~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
.......+.. +.... .... .....+|+++|++.+...+.... .+.+..+||+|||| ++...++ .+.+.
T Consensus 351 ~~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~----~~~I~ 423 (1038)
T 2w00_A 351 QRFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA----QKNLK 423 (1038)
T ss_dssp HTTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH----HHHHH
T ss_pred HHhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH----HHHHH
Confidence 5533221110 10000 0001 12467899999999988765432 35678899999999 6654433 34555
Q ss_pred HhhhcCceEEEEecccCh-------hHHHhhcCCCCeEee-------CCCcCceeeeecCCC------------------
Q 012322 145 NLRASKLKILITSATLDG-------EKVSKFFSNCPTLNV-------PGKLYPVEILHSKER------------------ 192 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~~-------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------------------ 192 (466)
...+ +.+++++|||+.. .....+|+.. +... .+...|+.+.|....
T Consensus 424 ~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i 501 (1038)
T 2w00_A 424 KKFK-RYYQFGFTGTPIFPENALGSETTASVFGRE-LHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAA 501 (1038)
T ss_dssp HHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHT
T ss_pred HhCC-cccEEEEeCCccccccchhhhHHHHHhCCe-eEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHH
Confidence 5555 7899999999953 2345566532 1111 122233333222110
Q ss_pred -------CCchHHHHHHHHHHHhhc--------CCCCCEEEecCCHHHHHHHHHHHHHhhhhccC--CCCCCeEE-Eeec
Q 012322 193 -------PTSYLESALKTAIDIHVR--------EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE--GSCMDAVI-LPLH 254 (466)
Q Consensus 193 -------~~~~~~~~~~~~~~~~~~--------~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~--~~~~~~~v-~~~h 254 (466)
...........++..+.. ..++++||||+|++.|..+++.|.+....... ....+..+ ..+|
T Consensus 502 ~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s 581 (1038)
T 2w00_A 502 ENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFS 581 (1038)
T ss_dssp CSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEe
Confidence 000112222223332211 12358999999999999999999876522100 00012333 3455
Q ss_pred CC----------C----------CHH-----------------------------HHhcccCCCCCCcceEEEEeccccc
Q 012322 255 GS----------L----------PPE-----------------------------MQVRVFSPPPPNCRRFIVSTNIAET 285 (466)
Q Consensus 255 ~~----------l----------~~~-----------------------------~r~~~~~~f~~g~~~ilvaT~~~~~ 285 (466)
++ + ++. +|..+.++|++|+++|||+|+++.+
T Consensus 582 ~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~llt 661 (1038)
T 2w00_A 582 FAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLT 661 (1038)
T ss_dssp CCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSS
T ss_pred CCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHh
Confidence 42 2 221 3778888999999999999999999
Q ss_pred ccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCC-----CeEEEecC
Q 012322 286 SLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP-----GKCYRLYP 345 (466)
Q Consensus 286 Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~-----G~~~~l~~ 345 (466)
|+|+|.+. |+..+. |.+...++||+||+||..+ |.++.+..
T Consensus 662 GfDiP~l~-tlylDk------------------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 662 GFDAPTLN-TLFVDK------------------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SCCCTTEE-EEEEES------------------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred CcCccccc-EEEEcc------------------CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999995 444333 3466789999999999854 55555543
No 58
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.93 E-value=9.2e-26 Score=229.61 Aligned_cols=309 Identities=15% Similarity=0.102 Sum_probs=187.2
Q ss_pred CchHhHHHHHHHH----hcCCEEEEEcCCCCcHHHHHHHHHHhc-CcCCCcEEEEeCchhHHHHHHHHHHHHHhC-CccC
Q 012322 5 PILQYEETIVETV----EQNPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELG-VRLG 78 (466)
Q Consensus 5 pi~~~q~~i~~~i----~~~~~~ii~apTGsGKTt~~~~~~~~~-~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~-~~~~ 78 (466)
.++++|.+.++.+ ..+...++..+||+|||.++..++... ......++++++| ..++.|+.+.+.+... ..+.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v~ 115 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRFA 115 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCEE
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceEE
Confidence 3788999987766 567788999999999995544444332 2223457888889 4577888888876653 1111
Q ss_pred CeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEec
Q 012322 79 EEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (466)
Q Consensus 79 ~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (466)
...|. .........+|+++|++.+.+... ....++++||+||||. ..+.... ..+.+. ..+ ..+.+++||
T Consensus 116 ~~~g~---~~~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~-~kn~~~~--~~~~l~-~l~-~~~~l~LTa 185 (500)
T 1z63_A 116 VFHED---RSKIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQN-IKNPQTK--IFKAVK-ELK-SKYRIALTG 185 (500)
T ss_dssp ECSSS---TTSCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGG-GSCTTSH--HHHHHH-TSC-EEEEEEECS
T ss_pred EEecC---chhccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccc-cCCHhHH--HHHHHH-hhc-cCcEEEEec
Confidence 11110 011223457899999998865432 1234689999999994 3332211 112222 222 457899999
Q ss_pred ccChhHHH------hhcC---------------------------------CCCeEeeCC------CcCceee---eecC
Q 012322 159 TLDGEKVS------KFFS---------------------------------NCPTLNVPG------KLYPVEI---LHSK 190 (466)
Q Consensus 159 T~~~~~~~------~~~~---------------------------------~~~~~~~~~------~~~~~~~---~~~~ 190 (466)
|+-.+.+. .++. ....+.... ...|... .+..
T Consensus 186 TP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~ 265 (500)
T 1z63_A 186 TPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCN 265 (500)
T ss_dssp SCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcC
Confidence 98332111 1110 001111000 0011111 0000
Q ss_pred CCCC--c-hH------------------------------------------------HHHHHHHHHHhh--cCCCCCEE
Q 012322 191 ERPT--S-YL------------------------------------------------ESALKTAIDIHV--REPEGDVL 217 (466)
Q Consensus 191 ~~~~--~-~~------------------------------------------------~~~~~~~~~~~~--~~~~~~~l 217 (466)
.... . |. ..+...+..+.. ...+.++|
T Consensus 266 l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~l 345 (500)
T 1z63_A 266 LTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIA 345 (500)
T ss_dssp CCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEE
Confidence 0000 0 00 001111111111 13467999
Q ss_pred EecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCC-cce-EEEEecccccccccCCeEEE
Q 012322 218 IFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRR-FIVSTNIAETSLTVDGVVYV 295 (466)
Q Consensus 218 VF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g-~~~-ilvaT~~~~~Gidip~v~~V 295 (466)
||++++..++.+++.|.+.. +..+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+|++++|
T Consensus 346 vF~~~~~~~~~l~~~l~~~~---------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 346 IFTQFVDMGKIIRNIIEKEL---------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp EECSCHHHHHHHHHHHHHHH---------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred EEEehHHHHHHHHHHHHHhh---------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 99999999999999998752 56677899999999999999999988 454 78999999999999999999
Q ss_pred EeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC---CCeEEEecCccchhh
Q 012322 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD 351 (466)
Q Consensus 296 I~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~ 351 (466)
|+++.|. +...+.||+||++|.+ +..+|+++.+...+.
T Consensus 417 i~~d~~~------------------~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 417 IHFDRWW------------------NPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp EESSCCS------------------CC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred EEeCCCC------------------CcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHH
Confidence 9977653 4447779999999983 345677777665443
No 59
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.91 E-value=9.2e-23 Score=212.31 Aligned_cols=114 Identities=18% Similarity=0.107 Sum_probs=101.6
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCC
Q 012322 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (466)
Q Consensus 212 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~ 291 (466)
.++++||||+|+..++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+|+|||+++++|+|+|+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCC
Confidence 3569999999999999999999886 677888999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccc
Q 012322 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTV 348 (466)
Q Consensus 292 v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~ 348 (466)
+++||+++..+. ..|.|..+|+||+|||||.++|.|+.++++.+
T Consensus 508 v~lVI~~d~d~~-------------G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 551 (664)
T 1c4o_A 508 VSLVAILDADKE-------------GFLRSERSLIQTIGRAARNARGEVWLYADRVS 551 (664)
T ss_dssp EEEEEETTTTSC-------------SGGGSHHHHHHHHGGGTTSTTCEEEEECSSCC
T ss_pred CCEEEEeCCccc-------------CCCCCHHHHHHHHCccCcCCCCEEEEEEcCCC
Confidence 999999875331 11347889999999999999999999997754
No 60
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.91 E-value=3.5e-23 Score=208.65 Aligned_cols=165 Identities=19% Similarity=0.166 Sum_probs=117.3
Q ss_pred ceEEEEecccChh--HHHhhcCCCCeEeeCCCcCceeeeecC---CCCCchHHHHHHHHHHHhhcCCCCCEEEecCCHHH
Q 012322 151 LKILITSATLDGE--KVSKFFSNCPTLNVPGKLYPVEILHSK---ERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (466)
Q Consensus 151 ~~ii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~t~~~ 225 (466)
.++.+||+|+..+ .+.+.+ +..++.++............ ....+.....+..+...+ ..+.++||||+|++.
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY-~l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~--~~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVY-GMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRY--KKGQPVLVGTTSIEK 486 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHS-CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--HHTCCEEEEESSHHH
T ss_pred hHHeEECCCCchHHHHHHHHh-CCeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHh--hCCCCEEEEECCHHH
Confidence 5788899998543 355655 35566666532111111100 011112222222222222 234689999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccC--------CeEEEEe
Q 012322 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD--------GVVYVID 297 (466)
Q Consensus 226 ~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip--------~v~~VI~ 297 (466)
++.++..|.+. ++.+..+||+....++..+.+++++| .|+||||+|+||+||+ +..+||+
T Consensus 487 sE~Ls~~L~~~----------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn 554 (822)
T 3jux_A 487 SELLSSMLKKK----------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG 554 (822)
T ss_dssp HHHHHHHHHTT----------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE
T ss_pred HHHHHHHHHHC----------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe
Confidence 99999999886 77788899997766776666667666 6999999999999998 6679999
Q ss_pred CCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 298 ~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
+++|. |...|.||+||+||. .+|.++.+++.++
T Consensus 555 te~Pe------------------s~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 555 TERHE------------------SRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp SSCCS------------------SHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred cCCCC------------------CHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 88876 777999999999999 7999998887776
No 61
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=5.9e-23 Score=178.48 Aligned_cols=130 Identities=15% Similarity=0.242 Sum_probs=108.2
Q ss_pred HHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEE
Q 012322 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS 279 (466)
Q Consensus 200 ~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilva 279 (466)
+...+..+......+++||||++++.++.++..|.+. +..+..+||+|++++|..+++.|++|+.+||||
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLva 90 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD----------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLIT 90 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT----------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 4455555555556789999999999999999999875 778999999999999999999999999999999
Q ss_pred ecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 280 TNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 280 T~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
|+++++|+|+|++++||+++.|.... ...+..+|+||+||+||. .+|.|+.++++.+...
T Consensus 91 T~~~~~Gid~~~~~~Vi~~d~p~~~~------------~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~ 151 (175)
T 2rb4_A 91 TNVCARGIDVKQVTIVVNFDLPVKQG------------EEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPS 151 (175)
T ss_dssp CCSCCTTTCCTTEEEEEESSCCC--C------------CSCCHHHHHHHHCBC----CCEEEEEEECGGGHHH
T ss_pred ecchhcCCCcccCCEEEEeCCCCCcc------------ccCCHHHHHHHhcccccCCCCceEEEEEccchHHH
Confidence 99999999999999999988763111 124888999999999998 7899999998876543
No 62
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.88 E-value=5.2e-23 Score=176.55 Aligned_cols=114 Identities=21% Similarity=0.338 Sum_probs=103.8
Q ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEeccccccccc
Q 012322 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (466)
Q Consensus 210 ~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi 289 (466)
...++++||||++++.++.+++.|.+. ++.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+
T Consensus 32 ~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~ 101 (163)
T 2hjv_A 32 TENPDSCIIFCRTKEHVNQLTDELDDL----------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDI 101 (163)
T ss_dssp HHCCSSEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCC
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCch
Confidence 345679999999999999999999876 7789999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 290 p~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
|++++||+++.|. +..+|+||+||+||. ++|.|+.++++.+...
T Consensus 102 ~~~~~Vi~~~~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 146 (163)
T 2hjv_A 102 ENISLVINYDLPL------------------EKESYVHRTGRTGRAGNKGKAISFVTAFEKRF 146 (163)
T ss_dssp SCCSEEEESSCCS------------------SHHHHHHHTTTSSCTTCCEEEEEEECGGGHHH
T ss_pred hcCCEEEEeCCCC------------------CHHHHHHhccccCcCCCCceEEEEecHHHHHH
Confidence 9999999988754 777999999999999 6899999998776543
No 63
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=2.1e-21 Score=202.30 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=96.8
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcc---eEEEEeccccccc
Q 012322 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR---RFIVSTNIAETSL 287 (466)
Q Consensus 211 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~---~ilvaT~~~~~Gi 287 (466)
..+.++|||++.+..++.+...|... ++.+..+||+++.++|.++++.|++|.. .+|++|.+++.|+
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~----------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gl 483 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR----------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGL 483 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH----------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC----------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCc
Confidence 34679999999999999999999876 7778899999999999999999998865 4899999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCC---CCeEEEecCccchhh
Q 012322 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD 351 (466)
Q Consensus 288 dip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~ 351 (466)
|++++++||+++.+- +.+.+.|++||++|.+ +..+|+++++...+.
T Consensus 484 nl~~a~~Vi~~d~~w------------------np~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe 532 (644)
T 1z3i_X 484 NLIGANRLVMFDPDW------------------NPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532 (644)
T ss_dssp CCTTEEEEEECSCCS------------------SHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred ccccCCEEEEECCCC------------------CccHHHHHHHhhhhcCCCCceEEEEEEECCCHHH
Confidence 999999999977543 7778999999999983 446888887765443
No 64
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.87 E-value=8.6e-23 Score=175.65 Aligned_cols=118 Identities=20% Similarity=0.324 Sum_probs=101.3
Q ss_pred HHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEeccccc
Q 012322 206 DIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAET 285 (466)
Q Consensus 206 ~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~ 285 (466)
.+....+.+++||||++++.++.+++.|.+. +..+..+||+|++++|.++++.|++|+.+|||||+++++
T Consensus 23 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 92 (165)
T 1fuk_A 23 DLYDSISVTQAVIFCNTRRKVEELTTKLRND----------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 92 (165)
T ss_dssp HHHHHTTCSCEEEEESSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTT
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhc
Confidence 3333446689999999999999999999875 778999999999999999999999999999999999999
Q ss_pred ccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 286 SLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 286 Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
|+|+|++++||+++.|. +..+|.||+||+||. ++|.|+.++++.+...
T Consensus 93 G~d~~~~~~Vi~~~~p~------------------~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~ 141 (165)
T 1fuk_A 93 GIDVQQVSLVINYDLPA------------------NKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 141 (165)
T ss_dssp TCCCCSCSEEEESSCCS------------------SGGGGGGSSCSCC-----CEEEEEEETTTHHH
T ss_pred CCCcccCCEEEEeCCCC------------------CHHHHHHHhcccccCCCCceEEEEEcchHHHH
Confidence 99999999999988765 566889999999999 7899999998776543
No 65
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.1e-22 Score=212.03 Aligned_cols=313 Identities=16% Similarity=0.116 Sum_probs=192.4
Q ss_pred CCchHhHHHHHHHHh----cCCEEEEEcCCCCcHHHHHHHHHHhc--CcCCCcEEEEeCchhHHHHHHHHHHHHHhC-Cc
Q 012322 4 LPILQYEETIVETVE----QNPVVVVIGETGSGKSTQLSQILHRH--GYTKSGIIGVTQPRRVAAVSVARRVAQELG-VR 76 (466)
Q Consensus 4 lpi~~~q~~i~~~i~----~~~~~ii~apTGsGKTt~~~~~~~~~--~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~-~~ 76 (466)
..++.||.+.++.+. .+...++..++|+|||.++..++... .....+.+++++| ..++.|+.+.+.+... ..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 467889999887554 88899999999999995544443322 1223456788888 5667888888877652 22
Q ss_pred cCCeeeeeEee--------------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHH
Q 012322 77 LGEEVGYAIRF--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (466)
Q Consensus 77 ~~~~~g~~~~~--------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~ 142 (466)
+....|..... ........+|+++|++.+.+....- ...++++||+|||| +.-+.... ...
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l-~~~~w~~vIvDEaH-~lkn~~s~---~~~ 388 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL-GSIKWQFMAVDEAH-RLKNAESS---LYE 388 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH-HTSEEEEEEETTGG-GGCCSSSH---HHH
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH-hcCCcceeehhhhh-hhcCchhH---HHH
Confidence 22222211000 0012345789999999887643211 12367899999999 43222111 112
Q ss_pred HHHhhhcCceEEEEecccCh---hHH---HhhcCCC-----------------------------C-eEeeCC----CcC
Q 012322 143 LVNLRASKLKILITSATLDG---EKV---SKFFSNC-----------------------------P-TLNVPG----KLY 182 (466)
Q Consensus 143 i~~~~~~~~~ii~~SAT~~~---~~~---~~~~~~~-----------------------------~-~~~~~~----~~~ 182 (466)
.+...+ ....+++|||+-. ..+ ..|+.-. + ++.... ...
T Consensus 389 ~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L 467 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL 467 (800)
T ss_dssp HHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS
T ss_pred HHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc
Confidence 222223 4567889999822 111 1222100 0 000000 000
Q ss_pred cee---eeecCCCCC-------------------------ch--------------------------------------
Q 012322 183 PVE---ILHSKERPT-------------------------SY-------------------------------------- 196 (466)
Q Consensus 183 ~~~---~~~~~~~~~-------------------------~~-------------------------------------- 196 (466)
|.. +.+...... ..
T Consensus 468 P~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 468 PSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 100 000000000 00
Q ss_pred H------HHHHHHHHHHh--hcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCC
Q 012322 197 L------ESALKTAIDIH--VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSP 268 (466)
Q Consensus 197 ~------~~~~~~~~~~~--~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~ 268 (466)
. ..++..+..+. ....+.++|||+.....+..+...|... ++.+..+||+++.++|.++++.
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~----------g~~~~~i~G~~~~~eR~~~i~~ 617 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK----------GINFQRLDGTVPSAQRRISIDH 617 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH----------TCCCEEESTTSCHHHHHHHHHT
T ss_pred HHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHH
Confidence 0 00011111111 1234569999999999999999999876 7778899999999999999999
Q ss_pred CCCCcc---eEEEEecccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC---CCCeEEE
Q 012322 269 PPPNCR---RFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYR 342 (466)
Q Consensus 269 f~~g~~---~ilvaT~~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~---~~G~~~~ 342 (466)
|+++.. .+|++|.+++.|+|++++++||+++.+- +...+.||.||++|. ++..+|+
T Consensus 618 F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~w------------------np~~~~Qa~gR~~RiGQ~k~V~Vyr 679 (800)
T 3mwy_W 618 FNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDW------------------NPQADLQAMARAHRIGQKNHVMVYR 679 (800)
T ss_dssp TSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCS------------------CSHHHHHHHTTTSCSSCCSCEEEEE
T ss_pred hhCCCCCceEEEEecccccCCCCccccceEEEecCCC------------------ChhhHHHHHHHHHhcCCCceEEEEE
Confidence 998644 5899999999999999999999976543 556888999999997 4567889
Q ss_pred ecCccchhh
Q 012322 343 LYPSTVYHD 351 (466)
Q Consensus 343 l~~~~~~~~ 351 (466)
|+++...+.
T Consensus 680 lv~~~TiEe 688 (800)
T 3mwy_W 680 LVSKDTVEE 688 (800)
T ss_dssp EEETTSHHH
T ss_pred EecCCCHHH
Confidence 998876654
No 66
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=1.3e-22 Score=175.43 Aligned_cols=118 Identities=19% Similarity=0.250 Sum_probs=105.1
Q ss_pred HHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecc
Q 012322 203 TAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI 282 (466)
Q Consensus 203 ~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~ 282 (466)
.+..+....+.+++||||++++.++.+++.|... ++.+..+||+|++++|..+++.|++|+.+|||||++
T Consensus 21 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 90 (172)
T 1t5i_A 21 KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ----------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 90 (172)
T ss_dssp HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC
T ss_pred HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc----------CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc
Confidence 3344444456679999999999999999999886 778899999999999999999999999999999999
Q ss_pred cccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccc
Q 012322 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (466)
Q Consensus 283 ~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 348 (466)
+++|+|+|++++||+++.|. +..+|+||+||+||. ++|.++.++++.+
T Consensus 91 ~~~Gldi~~~~~Vi~~d~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 91 FGRGMDIERVNIAFNYDMPE------------------DSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp CSTTCCGGGCSEEEESSCCS------------------SHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred hhcCcchhhCCEEEEECCCC------------------CHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 99999999999999988765 777999999999999 7899999998653
No 67
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.87 E-value=8.5e-22 Score=204.93 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=102.0
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCC
Q 012322 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (466)
Q Consensus 212 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~ 291 (466)
.++++||||+|+..++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+|+|||+++++|+|+|+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCC
Confidence 4569999999999999999999886 677888999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCCCCCeEEEecCccch
Q 012322 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVY 349 (466)
Q Consensus 292 v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 349 (466)
+++||+++.+.. | .|.|..+|+||+|||||..+|.|+.++++.+.
T Consensus 514 v~lVi~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 514 VSLVAILDADKE-------G------FLRSERSLIQTIGRAARNAEGRVIMYADKITK 558 (661)
T ss_dssp EEEEEETTTTCC-------T------TTTSHHHHHHHHHTTTTSTTCEEEEECSSCCH
T ss_pred CCEEEEeCcccc-------c------CCCCHHHHHHHhCcccCCCCCEEEEEEeCCCH
Confidence 999999876321 1 13477899999999999999999999977543
No 68
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.86 E-value=3.8e-22 Score=174.61 Aligned_cols=112 Identities=17% Similarity=0.237 Sum_probs=89.0
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccccccccCC
Q 012322 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (466)
Q Consensus 212 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidip~ 291 (466)
+++++||||++++.++.+++.|... ++.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----------TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCccc
Confidence 4679999999999999999999875 778999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchhh
Q 012322 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 292 v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (466)
+++||+++.|. +..+|+||+||+||. ++|.|+.++++.+...
T Consensus 115 ~~~VI~~d~p~------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 157 (185)
T 2jgn_A 115 VKHVINFDLPS------------------DIEEYVHRIGRTGRVGNLGLATSFFNERNINI 157 (185)
T ss_dssp BSEEEESSCCS------------------SHHHHHHHHTTBCCTTSCEEEEEEECGGGGGG
T ss_pred CCEEEEeCCCC------------------CHHHHHHHccccCCCCCCcEEEEEEchhhHHH
Confidence 99999988754 777999999999999 6899999998876543
No 69
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=172.10 Aligned_cols=117 Identities=18% Similarity=0.263 Sum_probs=102.0
Q ss_pred HHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEec
Q 012322 202 KTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN 281 (466)
Q Consensus 202 ~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~ 281 (466)
..+...... .++++||||++++.++.+++.|... ++.+..+||+|++++|.++++.|++|+.+|||||+
T Consensus 44 ~~L~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 44 VYLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLK----------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp HHHHHHHTT-SCSCEEEECSCHHHHHHHHHHHHHH----------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred HHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 334444433 3568999999999999999999886 77889999999999999999999999999999999
Q ss_pred ccccccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCcc
Q 012322 282 IAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (466)
Q Consensus 282 ~~~~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 347 (466)
++++|+|+|++++||+++.|. +..+|+||+||+||. ++|.|+.++++.
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~------------------~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPE------------------EIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCS------------------SHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCC------------------CHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 999999999999999988764 777999999999999 789999999865
No 70
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.75 E-value=9.3e-23 Score=176.29 Aligned_cols=118 Identities=15% Similarity=0.229 Sum_probs=104.2
Q ss_pred HHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecccc
Q 012322 205 IDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAE 284 (466)
Q Consensus 205 ~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~ 284 (466)
..+......+++||||++++.++.+++.|... ++.+..+||+|++++|.++++.|++|+.+|||||++++
T Consensus 22 ~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 91 (170)
T 2yjt_D 22 VHLLKQPEATRSIVFVRKRERVHELANWLREA----------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 91 (170)
Confidence 33333445679999999999999999999875 77889999999999999999999999999999999999
Q ss_pred cccccCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC-CCCeEEEecCccchh
Q 012322 285 TSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (466)
Q Consensus 285 ~Gidip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (466)
+|+|+|++++||+++.|. +..+|+||+||+||. ++|.|+.+++..+..
T Consensus 92 ~Gid~~~~~~Vi~~~~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 92 RGIDIPDVSHVFNFDMPR------------------SGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 999999999999988764 666899999999999 689999999877544
No 71
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=168.71 Aligned_cols=168 Identities=17% Similarity=0.168 Sum_probs=114.2
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHH--HHHHHHHhcC------cCCCcEEEEeCchhHHHHHHHHHHHHHhC--
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKST--QLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQELG-- 74 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt--~~~~~~~~~~------~~~~~~i~~~~p~~~l~~~~~~~~~~~~~-- 74 (466)
..+++|.++++.+.+|+++++++|||||||. +++.+..... ...+.+++++.|+++++.|+.+.+.+...
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 121 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKG 121 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccC
Confidence 3578999999999999999999999999993 3333332221 12456789999999999999998877532
Q ss_pred CccCCeeeeeEeec--cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCc
Q 012322 75 VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (466)
Q Consensus 75 ~~~~~~~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~ 151 (466)
.......|...... .....+.+|+++||+.+.+.+.... .+.+++++|+|||| +..+.++... +..+....+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~-~~~i~~~~~~~~ 199 (228)
T 3iuy_A 122 LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD-KMLDMEFEPQ-IRKILLDVRPDR 199 (228)
T ss_dssp CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH-HHHHTTCHHH-HHHHHHHSCSSC
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH-HHhccchHHH-HHHHHHhCCcCC
Confidence 22222222111111 1112457999999999998876655 58899999999999 4444444443 555566666689
Q ss_pred eEEEEecccChhH---HHhhcCCCCe
Q 012322 152 KILITSATLDGEK---VSKFFSNCPT 174 (466)
Q Consensus 152 ~ii~~SAT~~~~~---~~~~~~~~~~ 174 (466)
+++++|||++.+. ...++.++..
T Consensus 200 ~~l~~SAT~~~~~~~~~~~~l~~p~~ 225 (228)
T 3iuy_A 200 QTVMTSATWPDTVRQLALSYLKDPMI 225 (228)
T ss_dssp EEEEEESCCCHHHHHHHHTTCSSCEE
T ss_pred eEEEEEeeCCHHHHHHHHHHCCCCEE
Confidence 9999999998643 4456654443
No 72
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.83 E-value=5.4e-20 Score=166.58 Aligned_cols=174 Identities=18% Similarity=0.194 Sum_probs=117.8
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhc-CcCCCcEEEEeCchhHHHHHHHHHHHHHhC---CccCC
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGE 79 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~-~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~---~~~~~ 79 (466)
..+.+|.++++.+.+++++++++|||||||.. +..++... ....+.+++++.|+++++.|+.+.+.+... ..+..
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 115 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHA 115 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEE
Confidence 35789999999999999999999999999943 33344333 223456899999999999999998866542 22222
Q ss_pred eeeeeEeec-cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 80 EVGYAIRFE-DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 80 ~~g~~~~~~-~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
..|.....+ .....+.+|+++||+.+.+.+.... .+.+++++|+|||| +..+.++... +..+....+.+.+++++|
T Consensus 116 ~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~~-l~~i~~~~~~~~~~i~lS 193 (224)
T 1qde_A 116 CIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSSGFKEQ-IYQIFTLLPPTTQVVLLS 193 (224)
T ss_dssp ECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHTTCHHH-HHHHHHHSCTTCEEEEEE
T ss_pred EeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh-HHhhhhhHHH-HHHHHHhCCccCeEEEEE
Confidence 222211111 1112348999999999988876544 67889999999999 4444333333 556666665688999999
Q ss_pred cccChhH---HHhhcCCCCeEeeCCC
Q 012322 158 ATLDGEK---VSKFFSNCPTLNVPGK 180 (466)
Q Consensus 158 AT~~~~~---~~~~~~~~~~~~~~~~ 180 (466)
||++.+. +..++.++..+.+.+.
T Consensus 194 AT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 194 ATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp SSCCHHHHHHHHHHCSSCEEEC----
T ss_pred eecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9998743 5567776666655543
No 73
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.83 E-value=1.4e-19 Score=161.53 Aligned_cols=166 Identities=20% Similarity=0.172 Sum_probs=116.9
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHH-HHHHHHHhc-CcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeee
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt-~~~~~~~~~-~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g 82 (466)
..+++|.++++.+.+++++++++|||||||. ++..++... ....+.+++++.|+++++.|+++.+.+......+..++
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 104 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVM 104 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 4578999999999999999999999999993 333333333 22345589999999999999999887665332122222
Q ss_pred eeEeec------cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 83 YAIRFE------DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 83 ~~~~~~------~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
...... .......+|+++||+.+.+.+.... .+.+++++|+|||| +..+.++.. .+..+....+.+.++++
T Consensus 105 ~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~-~l~~i~~~~~~~~~~l~ 182 (206)
T 1vec_A 105 ATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD-KLLSQDFVQ-IMEDIILTLPKNRQILL 182 (206)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH-HHTSTTTHH-HHHHHHHHSCTTCEEEE
T ss_pred EEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH-HhHhhCcHH-HHHHHHHhCCccceEEE
Confidence 111110 1123467899999999988876554 67899999999999 455544443 36666666666899999
Q ss_pred EecccChhH---HHhhcCCC
Q 012322 156 TSATLDGEK---VSKFFSNC 172 (466)
Q Consensus 156 ~SAT~~~~~---~~~~~~~~ 172 (466)
+|||++.+. +..++.++
T Consensus 183 ~SAT~~~~~~~~~~~~l~~p 202 (206)
T 1vec_A 183 YSATFPLSVQKFMNSHLEKP 202 (206)
T ss_dssp EESCCCHHHHHHHHHHCSSC
T ss_pred EEeeCCHHHHHHHHHHcCCC
Confidence 999998643 45566543
No 74
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.82 E-value=3.4e-20 Score=167.30 Aligned_cols=172 Identities=19% Similarity=0.202 Sum_probs=118.7
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcCc-CCCcEEEEeCchhHHHHHHHHHHHHHhCC-------
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGV------- 75 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~------- 75 (466)
..+++|.++++.+.+|+++++++|||||||.. +..++..... ..+.+++++.|+++++.|+++.+.+....
T Consensus 26 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 105 (219)
T 1q0u_A 26 KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMI 105 (219)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccce
Confidence 35789999999999999999999999999943 3333333322 23568999999999999999988766532
Q ss_pred ccCCeeeeeEeec--cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCce
Q 012322 76 RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (466)
Q Consensus 76 ~~~~~~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (466)
.+....|...... .....+.+|+++||+.+.+.+.... .+.+++++|+|||| +..+.++.. .+..+....+.+.+
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~-~l~~i~~~~~~~~~ 183 (219)
T 1q0u_A 106 VARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD-LMLDMGFIT-DVDQIAARMPKDLQ 183 (219)
T ss_dssp CEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH-HHHHTTCHH-HHHHHHHTSCTTCE
T ss_pred EEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch-HHhhhChHH-HHHHHHHhCCcccE
Confidence 1111122110000 1112367899999999998876544 57889999999999 444333333 35666666666889
Q ss_pred EEEEecccChhH---HHhhcCCCCeEeeC
Q 012322 153 ILITSATLDGEK---VSKFFSNCPTLNVP 178 (466)
Q Consensus 153 ii~~SAT~~~~~---~~~~~~~~~~~~~~ 178 (466)
++++|||++.+. +..++.++..+.+.
T Consensus 184 ~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 184 MLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp EEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred EEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 999999997643 55677666555444
No 75
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=171.76 Aligned_cols=172 Identities=17% Similarity=0.162 Sum_probs=120.5
Q ss_pred chHhHHHHHHHHhcC--CEEEEEcCCCCcHH-HHHHHHHHhcC-cCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCee
Q 012322 6 ILQYEETIVETVEQN--PVVVVIGETGSGKS-TQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (466)
Q Consensus 6 i~~~q~~i~~~i~~~--~~~ii~apTGsGKT-t~~~~~~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~ 81 (466)
.+.+|.+++..+..+ ++++++|||||||| .++..++.... ...+.+++++.|+++++.|+++.+.+......+..+
T Consensus 115 pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~ 194 (300)
T 3fmo_B 115 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKL 194 (300)
T ss_dssp CCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEE
Confidence 356799999999987 89999999999999 43434444333 233458999999999999999888665543222222
Q ss_pred eeeEe---eccccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEE
Q 012322 82 GYAIR---FEDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (466)
Q Consensus 82 g~~~~---~~~~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~ 156 (466)
+.... .........+|+++|||.+..++.... .+.++++||||||| +.++...+...+..+....+.+.+++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad-~l~~~~~~~~~~~~i~~~~~~~~q~i~~ 273 (300)
T 3fmo_B 195 AYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VMIATQGHQDQSIRIQRMLPRNCQMLLF 273 (300)
T ss_dssp EEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH-HHHHSTTHHHHHHHHHTTSCTTCEEEEE
T ss_pred EEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH-HHhhccCcHHHHHHHHHhCCCCCEEEEE
Confidence 22211 122223457899999999999886533 57899999999999 4554223344466777777668999999
Q ss_pred ecccChhH---HHhhcCCCCeEeeC
Q 012322 157 SATLDGEK---VSKFFSNCPTLNVP 178 (466)
Q Consensus 157 SAT~~~~~---~~~~~~~~~~~~~~ 178 (466)
|||++.+. ...++.++..+.+.
T Consensus 274 SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 274 SATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp ESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred eccCCHHHHHHHHHHCCCCeEEEec
Confidence 99998753 44667666666543
No 76
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.82 E-value=8e-20 Score=166.08 Aligned_cols=170 Identities=16% Similarity=0.102 Sum_probs=117.7
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhc-CcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~-~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
.+.+|.++++.+.+|+++++++|||||||.. +..++... ....+.+++++.|+++++.|+++.+.+......+..++.
T Consensus 47 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 126 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHV 126 (230)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEE
Confidence 5789999999999999999999999999943 33333333 223456899999999999999998876543221222221
Q ss_pred eEe-----eccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 84 AIR-----FEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 84 ~~~-----~~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
... .......+.+|+++||+.+.+.+.... .+.+++++|+||+| +..+.+.+...++.+....+.+.+++++|
T Consensus 127 ~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~~i~~~~~~~~~~l~lS 205 (230)
T 2oxc_A 127 FIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD-KLLEEGSFQEQINWIYSSLPASKQMLAVS 205 (230)
T ss_dssp ECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH-HHHSTTSSHHHHHHHHHHSCSSCEEEEEE
T ss_pred EeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCch-HhhcCcchHHHHHHHHHhCCCCCeEEEEE
Confidence 110 011112457999999999998875544 57789999999999 45444323334666666666688999999
Q ss_pred cccChhH---HHhhcCCCCeEe
Q 012322 158 ATLDGEK---VSKFFSNCPTLN 176 (466)
Q Consensus 158 AT~~~~~---~~~~~~~~~~~~ 176 (466)
||++.+. +..|+.++..+.
T Consensus 206 AT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 206 ATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp SCCCHHHHHHHTTTCSSCEEEC
T ss_pred eccCHHHHHHHHHHcCCCeEEE
Confidence 9998652 456665554443
No 77
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.82 E-value=7.3e-20 Score=168.24 Aligned_cols=171 Identities=21% Similarity=0.210 Sum_probs=119.1
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHh-cCcCCCcEEEEeCchhHHHHHHHHHHHHHh---CCccCC
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGE 79 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~-~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~---~~~~~~ 79 (466)
..+.+|.++++.+.+|+++++++|||||||.. +..++.. .....+.+++++.|+++++.|+++.+.+.. +..+..
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~ 144 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAV 144 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEE
Confidence 56889999999999999999999999999943 3333322 222335579999999999999998876543 333322
Q ss_pred eeeeeEeec--cccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 80 EVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 80 ~~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
..|...... .....+.+|+++||+.+.+.+.... .+.++++||+|||| +..+.++... +..++...+.+.++++
T Consensus 145 ~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~~~~~-l~~i~~~~~~~~~~l~ 222 (249)
T 3ber_A 145 IVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-RILNMDFETE-VDKILKVIPRDRKTFL 222 (249)
T ss_dssp ECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHHHTTCHHH-HHHHHHSSCSSSEEEE
T ss_pred EECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-hhhccChHHH-HHHHHHhCCCCCeEEE
Confidence 222111100 1112467999999999998886533 67889999999999 5555555444 5666666666889999
Q ss_pred EecccChhH---HHhhcCCCCeEee
Q 012322 156 TSATLDGEK---VSKFFSNCPTLNV 177 (466)
Q Consensus 156 ~SAT~~~~~---~~~~~~~~~~~~~ 177 (466)
+|||++.+. ...++.++..+.+
T Consensus 223 ~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 223 FSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp EESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EeccCCHHHHHHHHHHCCCCEEEEe
Confidence 999998743 4466665555443
No 78
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.81 E-value=3.8e-19 Score=163.32 Aligned_cols=172 Identities=17% Similarity=0.145 Sum_probs=117.2
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHH-HHHHHHHhcC--cCCCcEEEEeCchhHHHHHHHHHHHHHhCC---ccCC
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGE 79 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt-~~~~~~~~~~--~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~---~~~~ 79 (466)
.+++|.++++.+.+|+++++++|||||||. ++..++.... ...+.+++++.|+++++.|+++.+.+.... .+..
T Consensus 52 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 131 (245)
T 3dkp_A 52 PTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHM 131 (245)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 578999999999999999999999999993 3333333222 124558999999999999999988765432 2211
Q ss_pred eeeeeE---eeccccCccceEEEcCHHHHHHHHhhC---CCCCCCcEEEecCCCccccC---HHHHHHHHHHHHH-hhhc
Q 012322 80 EVGYAI---RFEDRTSERTLIKYLTDGVLLREILSN---PDLSPYSVIILDEAHERSLN---TDILLGLVKRLVN-LRAS 149 (466)
Q Consensus 80 ~~g~~~---~~~~~~~~~~~i~~~T~g~l~~~~~~~---~~l~~~~~iIiDEah~~~~~---~~~~~~~l~~i~~-~~~~ 149 (466)
..|... ........+.+|+++||+.+...+... ..+.+++++|+||||. ..+ .++... +..+.. ..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~-~~~~~~~~~~~~-~~~i~~~~~~~ 209 (245)
T 3dkp_A 132 IHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDK-LFEDGKTGFRDQ-LASIFLACTSH 209 (245)
T ss_dssp CCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH-HHHHC--CHHHH-HHHHHHHCCCT
T ss_pred EecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHH-hcccccccHHHH-HHHHHHhcCCC
Confidence 111110 011222456799999999999988665 3678999999999994 433 344444 344433 3334
Q ss_pred CceEEEEecccChhH---HHhhcCCCCeEeeCC
Q 012322 150 KLKILITSATLDGEK---VSKFFSNCPTLNVPG 179 (466)
Q Consensus 150 ~~~ii~~SAT~~~~~---~~~~~~~~~~~~~~~ 179 (466)
+.++++||||++.+. ...++.++..+.+..
T Consensus 210 ~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 210 KVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp TCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred CcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 789999999997643 445666666666554
No 79
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=4.2e-19 Score=160.19 Aligned_cols=168 Identities=17% Similarity=0.132 Sum_probs=116.4
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHH-HHHHHHHhcCc-CCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt-~~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
.+.+|.++++.+.+++++++++|||||||. .+..++..... .++.+++++.|+++++.|+++.+.+......+..++.
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 116 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 116 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 578999999999999999999999999994 33333333332 2344899999999999999998876653221222221
Q ss_pred eEeec---c----ccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccC-HHHHHHHHHHHHHhhhcCceEE
Q 012322 84 AIRFE---D----RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKIL 154 (466)
Q Consensus 84 ~~~~~---~----~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~-~~~~~~~l~~i~~~~~~~~~ii 154 (466)
..... . ......+|+++||+.+...+.... .+.+++++|+|||| +..+ .++. ..+..+....+.+.+++
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~-~~~~~i~~~~~~~~~~i 194 (220)
T 1t6n_A 117 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD-KMLEQLDMR-RDVQEIFRMTPHEKQVM 194 (220)
T ss_dssp ESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH-HHHSSHHHH-HHHHHHHHTSCSSSEEE
T ss_pred EeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHH-HHhcccCcH-HHHHHHHHhCCCcCeEE
Confidence 11100 0 011246899999999998876554 67899999999999 4443 4443 34666666666689999
Q ss_pred EEecccChhH---HHhhcCCCCeE
Q 012322 155 ITSATLDGEK---VSKFFSNCPTL 175 (466)
Q Consensus 155 ~~SAT~~~~~---~~~~~~~~~~~ 175 (466)
++|||++.+. ...|+.++..+
T Consensus 195 ~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 195 MFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp EEESCCCTTTHHHHHTTCSSCEEE
T ss_pred EEEeecCHHHHHHHHHHcCCCeEE
Confidence 9999997642 45666655443
No 80
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.81 E-value=8.6e-20 Score=167.22 Aligned_cols=171 Identities=22% Similarity=0.191 Sum_probs=119.1
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHH-H-HHHHHHHhcC-----cCCCcEEEEeCchhHHHHHHHHHHHHH---hCC
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-T-QLSQILHRHG-----YTKSGIIGVTQPRRVAAVSVARRVAQE---LGV 75 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKT-t-~~~~~~~~~~-----~~~~~~i~~~~p~~~l~~~~~~~~~~~---~~~ 75 (466)
.+++|.+++..+.+|+++++++||||||| + +++.+..... ...+.+++++.|+++++.|+.+.+.+. .+.
T Consensus 52 ~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 131 (242)
T 3fe2_A 52 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRL 131 (242)
T ss_dssp CCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCc
Confidence 57899999999999999999999999999 3 3333332221 123567899999999999998876543 343
Q ss_pred ccCCeeeeeEeec--cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCce
Q 012322 76 RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (466)
Q Consensus 76 ~~~~~~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (466)
.+....|...... .....+.+|+++||+.+.+.+.... .+.+++++|+|||| +..+.++... +..+.+..+.+.+
T Consensus 132 ~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~l~~~~~~~~-~~~i~~~~~~~~q 209 (242)
T 3fe2_A 132 KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD-RMLDMGFEPQ-IRKIVDQIRPDRQ 209 (242)
T ss_dssp CEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH-HHHHTTCHHH-HHHHHTTSCSSCE
T ss_pred eEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH-HHhhhCcHHH-HHHHHHhCCccce
Confidence 3332222111100 0112347899999999998886554 68899999999999 4444444333 6667776666899
Q ss_pred EEEEecccChhH---HHhhcCCCCeEeeC
Q 012322 153 ILITSATLDGEK---VSKFFSNCPTLNVP 178 (466)
Q Consensus 153 ii~~SAT~~~~~---~~~~~~~~~~~~~~ 178 (466)
++++|||++.+. ...++.++..+.+.
T Consensus 210 ~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 210 TLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp EEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred EEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999998743 45677666656554
No 81
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.81 E-value=1.4e-19 Score=165.24 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=114.7
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcCc-CCCcEEEEeCchhHHHHHHHHHHHHHhC---CccCCe
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEE 80 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~---~~~~~~ 80 (466)
.+++|.++++.+.+++++++++|||||||.. +..++..... ..+.+++++.|+++++.|+++.+.+... ..+...
T Consensus 53 ~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 132 (237)
T 3bor_A 53 PSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHAC 132 (237)
T ss_dssp CCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEE
Confidence 5789999999999999999999999999943 3334333322 2456899999999999999998876543 222222
Q ss_pred eeeeEeec---cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEE
Q 012322 81 VGYAIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (466)
Q Consensus 81 ~g~~~~~~---~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~ 156 (466)
.|...... .......+|+++||+.+.+.+.... .+.++++||+|||| +..+.++... +..+.+..+.+.+++++
T Consensus 133 ~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~~-l~~i~~~~~~~~~~i~~ 210 (237)
T 3bor_A 133 IGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD-EMLSRGFKDQ-IYEIFQKLNTSIQVVLL 210 (237)
T ss_dssp CC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH-HHHHTTCHHH-HHHHHHHSCTTCEEEEE
T ss_pred ECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCch-HhhccCcHHH-HHHHHHhCCCCCeEEEE
Confidence 22111111 1112337899999999998876543 57889999999999 4444333333 45555555568899999
Q ss_pred ecccChhH---HHhhcCCCCeEe
Q 012322 157 SATLDGEK---VSKFFSNCPTLN 176 (466)
Q Consensus 157 SAT~~~~~---~~~~~~~~~~~~ 176 (466)
|||++.+. +..++.++..+.
T Consensus 211 SAT~~~~~~~~~~~~l~~p~~i~ 233 (237)
T 3bor_A 211 SATMPTDVLEVTKKFMRDPIRIL 233 (237)
T ss_dssp CSSCCHHHHHHHHHHCSSCEEEC
T ss_pred EEecCHHHHHHHHHHCCCCEEEE
Confidence 99998643 456666554443
No 82
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=164.85 Aligned_cols=173 Identities=20% Similarity=0.131 Sum_probs=118.1
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhc-----CcCCCcEEEEeCchhHHHHHHHHHHHHHhC---C
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRH-----GYTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~-----~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~---~ 75 (466)
..+++|.+++..+.+|+++++++|||||||.. +..++... ....+.+++++.|+++++.|+++.+.+... .
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 126 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDF 126 (236)
T ss_dssp BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCe
Confidence 45789999999999999999999999999943 22222221 112356899999999999999998866543 2
Q ss_pred ccCCeeeeeEee-ccccCccceEEEcCHHHHHHHHhhC--CCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCce
Q 012322 76 RLGEEVGYAIRF-EDRTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (466)
Q Consensus 76 ~~~~~~g~~~~~-~~~~~~~~~i~~~T~g~l~~~~~~~--~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (466)
.+....|..... ......+.+|+++||+.+.+.+... ..+.+++++|+|||| +..+.++... +..+....+.+.+
T Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~~~~~~~~~~-~~~i~~~~~~~~~ 204 (236)
T 2pl3_A 127 SAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD-RILDMGFADT-MNAVIENLPKKRQ 204 (236)
T ss_dssp CEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH-HHHHTTTHHH-HHHHHHTSCTTSE
T ss_pred eEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH-HHhcCCcHHH-HHHHHHhCCCCCe
Confidence 222222211110 1111246799999999999887654 367889999999999 4544444333 5666666666889
Q ss_pred EEEEecccChhH---HHhhcCCCCeEeeCC
Q 012322 153 ILITSATLDGEK---VSKFFSNCPTLNVPG 179 (466)
Q Consensus 153 ii~~SAT~~~~~---~~~~~~~~~~~~~~~ 179 (466)
++++|||++.+. ...++.++..+.+.+
T Consensus 205 ~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 205 TLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp EEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred EEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999998643 345666665555543
No 83
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.80 E-value=8.7e-19 Score=156.51 Aligned_cols=170 Identities=20% Similarity=0.144 Sum_probs=116.9
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcC----cCCCcEEEEeCchhHHHHHHHHHHHHHhCC-ccC
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHG----YTKSGIIGVTQPRRVAAVSVARRVAQELGV-RLG 78 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~----~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~-~~~ 78 (466)
..+++|.++++.+.+++++++.+|||||||.. +..++.... ...+.+++++.|+++++.|+++.+.+..+. .+.
T Consensus 23 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 102 (207)
T 2gxq_A 23 TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVV 102 (207)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEE
T ss_pred CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEE
Confidence 45789999999999999999999999999943 333333332 124568999999999999999998776542 211
Q ss_pred CeeeeeEee--ccccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 79 EEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 79 ~~~g~~~~~--~~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
...|..... ........+|+++||+.+.+.+.... .+.+++++|+|||| +..+.++. ..+..+....+.+.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~-~~~~~i~~~~~~~~~~i~ 180 (207)
T 2gxq_A 103 AVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD-EMLSMGFE-EEVEALLSATPPSRQTLL 180 (207)
T ss_dssp EECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH-HHHHTTCH-HHHHHHHHTSCTTSEEEE
T ss_pred EEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh-HhhccchH-HHHHHHHHhCCccCeEEE
Confidence 111111000 00111357899999999988886543 67899999999999 34333333 335566666656889999
Q ss_pred EecccChhH---HHhhcCCCCeEe
Q 012322 156 TSATLDGEK---VSKFFSNCPTLN 176 (466)
Q Consensus 156 ~SAT~~~~~---~~~~~~~~~~~~ 176 (466)
+|||++.+. ...++.++..+.
T Consensus 181 ~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 181 FSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp ECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred EEEecCHHHHHHHHHHcCCCeEEE
Confidence 999998642 445666555444
No 84
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=166.40 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=111.3
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHH-HHHHHHHhc-C----cCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCC
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRH-G----YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt-~~~~~~~~~-~----~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 79 (466)
.+++|.+++..+..+++++++||||||||. ++..++... . ...+.+++++.|+++++.|+++.+.+.... .+.
T Consensus 77 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~-~~~ 155 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTH-HVH 155 (262)
T ss_dssp CCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTT-CCS
T ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhh-cCc
Confidence 678999999999999999999999999993 233333221 1 123567999999999999999988775532 222
Q ss_pred eeeeeEeecc------ccCccceEEEcCHHHHHHHHhhCC--CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCc
Q 012322 80 EVGYAIRFED------RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (466)
Q Consensus 80 ~~g~~~~~~~------~~~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~ 151 (466)
.++....... ......+|+++|||.+...+.... .+.++++||+|||| +..+.++... +..+....+.+.
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-~l~~~~~~~~-l~~i~~~~~~~~ 233 (262)
T 3ly5_A 156 TYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-RILDVGFEEE-LKQIIKLLPTRR 233 (262)
T ss_dssp CEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH-HHHHTTCHHH-HHHHHHHSCSSS
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH-HHhhhhHHHH-HHHHHHhCCCCC
Confidence 2221111110 111347899999999998886654 67899999999999 4544444433 667777776689
Q ss_pred eEEEEecccChhH
Q 012322 152 KILITSATLDGEK 164 (466)
Q Consensus 152 ~ii~~SAT~~~~~ 164 (466)
+++++|||++.+.
T Consensus 234 q~l~~SAT~~~~v 246 (262)
T 3ly5_A 234 QTMLFSATQTRKV 246 (262)
T ss_dssp EEEEECSSCCHHH
T ss_pred eEEEEEecCCHHH
Confidence 9999999998753
No 85
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.77 E-value=3.9e-18 Score=157.31 Aligned_cols=171 Identities=21% Similarity=0.185 Sum_probs=114.2
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHH-HHHHHHHhcC----------cCCCcEEEEeCchhHHHHHHHHHHHHHhC
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHG----------YTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt-~~~~~~~~~~----------~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 74 (466)
.+.+|.++++.+.+++++++++|||||||. ++..++.... ...+.+++++.|+++++.|+.+.+.+...
T Consensus 46 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 125 (253)
T 1wrb_A 46 PTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSL 125 (253)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999993 3333332221 11235799999999999999998866543
Q ss_pred C---ccCCeeeeeEeec--cccCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHh--
Q 012322 75 V---RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNL-- 146 (466)
Q Consensus 75 ~---~~~~~~g~~~~~~--~~~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~-- 146 (466)
. .+....|...... .......+|+++||+.+.+.+.... .+.+++++|+|||| +..+.++... +..++..
T Consensus 126 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~~-~~~i~~~~~ 203 (253)
T 1wrb_A 126 NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD-RMLDMGFEPQ-IRKIIEESN 203 (253)
T ss_dssp TSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHH-HHHHTTCHHH-HHHHHHSSC
T ss_pred cCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHH-HHHhCchHHH-HHHHHhhcc
Confidence 2 2111112110000 1112457999999999998886554 67889999999999 4444333333 4555542
Q ss_pred hhc--CceEEEEecccChhH---HHhhcCCCCeEeeC
Q 012322 147 RAS--KLKILITSATLDGEK---VSKFFSNCPTLNVP 178 (466)
Q Consensus 147 ~~~--~~~ii~~SAT~~~~~---~~~~~~~~~~~~~~ 178 (466)
.+. +.+++++|||++.+. ...++.++..+.+.
T Consensus 204 ~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 204 MPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp CCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 222 678999999997742 44666665555544
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.75 E-value=5.4e-18 Score=172.93 Aligned_cols=126 Identities=13% Similarity=0.061 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEE-
Q 012322 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV- 278 (466)
Q Consensus 200 ~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilv- 278 (466)
....+..+.. ..++.+|||++|....+.+++.+... . ...++.. .+|.++++.|+++. .|++
T Consensus 372 ~~~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~~------------~-~~~q~~~--~~~~~~l~~f~~~~-~il~~ 434 (540)
T 2vl7_A 372 YSILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSGI------------P-VIEENKK--TRHEEVLELMKTGK-YLVML 434 (540)
T ss_dssp HHHHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTTS------------C-EEESTTT--CCHHHHHHHHHTSC-CEEEE
T ss_pred HHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhccC------------c-eEecCCC--CcHHHHHHHHhcCC-eEEEE
Confidence 3333333333 45678999999999999998776431 1 2345443 45677788887754 5666
Q ss_pred -EecccccccccCC----eEEEEeCCcccceeecCC-------------CCccccceeeecHHHHHHhccccCCC--CCC
Q 012322 279 -STNIAETSLTVDG----VVYVIDCGYVKQRQYNPS-------------SGMYSLDVVQISKVQANQRVGRAGRT--RPG 338 (466)
Q Consensus 279 -aT~~~~~Gidip~----v~~VI~~g~~~~~~~~~~-------------~~~~~~~~~~~s~~~~~Qr~GRaGR~--~~G 338 (466)
+|..+.+|||+|+ +++||..|+|-...-||. .++.+... +.......|-+||+-|. ..|
T Consensus 435 V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Q~~GR~iR~~~D~g 513 (540)
T 2vl7_A 435 VMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIH-DLTAIVIKQTIGRAFRDPNDYV 513 (540)
T ss_dssp EC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHH-HHHHHHHHHHHHHHCCSTTCCC
T ss_pred EecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHH-HHHHHHHHHHhCCcccCCCccE
Confidence 8899999999998 899999999965443331 11111111 11256678999999997 456
Q ss_pred eEEEe
Q 012322 339 KCYRL 343 (466)
Q Consensus 339 ~~~~l 343 (466)
..+.+
T Consensus 514 ~v~ll 518 (540)
T 2vl7_A 514 KIYLC 518 (540)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=149.04 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=99.5
Q ss_pred CCCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc-C----cCCCcEEEEeCchhHHHHH-HHHHHHHHhCC-
Q 012322 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-G----YTKSGIIGVTQPRRVAAVS-VARRVAQELGV- 75 (466)
Q Consensus 3 ~lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~-~----~~~~~~i~~~~p~~~l~~~-~~~~~~~~~~~- 75 (466)
.++.+++|.++++.+.+++++++.+|||+|||..+..++... . ...+.+++++.|++.++.| +.+.+.+....
T Consensus 31 ~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 110 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 110 (216)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTT
T ss_pred CCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccC
Confidence 467899999999999999999999999999995444333322 1 1235678899999999999 55555554432
Q ss_pred -ccCCeeeeeEeecc--ccCccceEEEcCHHHHHHHHhhC-------CCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 76 -RLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSN-------PDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 76 -~~~~~~g~~~~~~~--~~~~~~~i~~~T~g~l~~~~~~~-------~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
.+....|....... ......+|+++|++.+.+.+... ..+.++++||+|||| +..+.++...++..+..
T Consensus 111 ~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah-~~~~~~~~~~~~~~~~~ 189 (216)
T 3b6e_A 111 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH-HTNKEAVYNNIMRHYLM 189 (216)
T ss_dssp SCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHHHHH
T ss_pred ceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECch-hhccCCcHHHHHHHHHH
Confidence 22222221100000 11134789999999998887653 356789999999999 44444444444444433
Q ss_pred hh-------------hcCceEEEEecc
Q 012322 146 LR-------------ASKLKILITSAT 159 (466)
Q Consensus 146 ~~-------------~~~~~ii~~SAT 159 (466)
.. ..+.++++||||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 190 QKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HhcccccccccccCCCCcceEEEeecC
Confidence 22 037899999998
No 88
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.69 E-value=2.7e-17 Score=150.81 Aligned_cols=83 Identities=36% Similarity=0.655 Sum_probs=73.9
Q ss_pred cccccC-CCCCCHHHHHHHHHHHHHcccccCCCCCCHHHHHHccCCCCHHHHHHHHHhhhhCCHHHHHHHhhhhcCCCcc
Q 012322 383 VLKFDF-LDPPSSESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTL 461 (466)
Q Consensus 383 ~~~~~~-~~~p~~~~~~~~l~~L~~~~~l~~~~~~T~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~f 461 (466)
...|+| +|||+.+++..|++.|..+|+||++|+||++|+.|+++|+||++||||+.|..++|++++++|+|+||+++||
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCccc
Confidence 356788 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 012322 462 LPGR 465 (466)
Q Consensus 462 ~~~~ 465 (466)
..|.
T Consensus 85 ~~p~ 88 (270)
T 3i4u_A 85 YRPK 88 (270)
T ss_dssp CCCG
T ss_pred cCCc
Confidence 9885
No 89
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.69 E-value=9.1e-16 Score=157.91 Aligned_cols=117 Identities=20% Similarity=0.198 Sum_probs=81.5
Q ss_pred hHhHHHHHHHHhcCCEEEEEcCCCCcHH-H-HHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHH---HhCCccCCee
Q 012322 7 LQYEETIVETVEQNPVVVVIGETGSGKS-T-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ---ELGVRLGEEV 81 (466)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-t-~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~---~~~~~~~~~~ 81 (466)
+..|...+..+.+|+ +..+.||+||| + .+|.++... .+..+.++.|++.||.|.++.+.. .+|++++..+
T Consensus 81 t~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~ 155 (997)
T 2ipc_A 81 FDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQ 155 (997)
T ss_dssp CHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECC
T ss_pred cHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 567887788888998 78999999999 3 334433332 245688999999999998887654 4555555444
Q ss_pred eeeEeeccccCccceEEEcCHHHH-HHHHhhC-------CCCC---CCcEEEecCCCc
Q 012322 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLS---PYSVIILDEAHE 128 (466)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l-~~~~~~~-------~~l~---~~~~iIiDEah~ 128 (466)
|............++|+|+||+.+ ..++... ..+. ++.++||||+|.
T Consensus 156 Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 156 HASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp TTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred CCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 422111122224589999999999 5666443 2466 899999999995
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.62 E-value=5.5e-16 Score=145.22 Aligned_cols=150 Identities=11% Similarity=0.012 Sum_probs=101.7
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeee
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~ 83 (466)
+..+.+|.+.++.+.+++..++++|||+|||..+..++......++.+++++.|+++++.|+.+.+.+...... ..++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~-~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSH-AMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCG-GGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhccccc-ceEEE
Confidence 46788999999988888888999999999995554444332222344899999999999999999976643221 11111
Q ss_pred eEeecc---ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 84 AIRFED---RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 84 ~~~~~~---~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
...... ......+|+++|++.+.+.. ...+.+++++|+|||| +... . .+..++.......+++++|||+
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH-~~~~-~----~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECH-LATG-K----SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGG-GCCH-H----HHHHHTTTCTTCCEEEEECSSC
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCc-cCCc-c----cHHHHHHHhhcCCeEEEEeCCC
Confidence 111111 11156899999998765431 1246788999999999 3432 2 2455555554478999999999
Q ss_pred Ch
Q 012322 161 DG 162 (466)
Q Consensus 161 ~~ 162 (466)
+.
T Consensus 263 ~~ 264 (282)
T 1rif_A 263 RD 264 (282)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.58 E-value=1.2e-14 Score=132.21 Aligned_cols=138 Identities=19% Similarity=0.177 Sum_probs=99.8
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCc-cCCeee
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEEVG 82 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~-~~~~~g 82 (466)
...+.+|.+.++.+.+++.+++++|||+|||.++..++... +.+++++.|++.++.|+.+.+.+ ++.. ++...|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g 166 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSG 166 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESS
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeC
Confidence 35688999999999999999999999999997666555543 45788889999999999988876 5543 222211
Q ss_pred eeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccCh
Q 012322 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (466)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~ 162 (466)
......+|+++|++.+.+.... ...++++|||||+|. ..+.. .+.+....+ ..+++++|||+..
T Consensus 167 -------~~~~~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~-l~~~~-----~~~i~~~~~-~~~~l~LSATp~r 230 (237)
T 2fz4_A 167 -------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHH-LPAES-----YVQIAQMSI-APFRLGLTATFER 230 (237)
T ss_dssp -------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSC-CCTTT-----HHHHHHTCC-CSEEEEEEESCC-
T ss_pred -------CCCCcCCEEEEeHHHHHhhHHH--hcccCCEEEEECCcc-CCChH-----HHHHHHhcc-CCEEEEEecCCCC
Confidence 2234578999999988765532 234689999999994 43332 233444444 6789999999964
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.58 E-value=6.9e-13 Score=135.71 Aligned_cols=167 Identities=16% Similarity=0.112 Sum_probs=97.5
Q ss_pred ceEEEEecccCh-hHHHhhcCCC-CeE------eeCCCcCcee-eeecCC--C------CCchHHHHHHHHHHHhhcCCC
Q 012322 151 LKILITSATLDG-EKVSKFFSNC-PTL------NVPGKLYPVE-ILHSKE--R------PTSYLESALKTAIDIHVREPE 213 (466)
Q Consensus 151 ~~ii~~SAT~~~-~~~~~~~~~~-~~~------~~~~~~~~~~-~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~ 213 (466)
..+|++|||+.+ +.+.+.++-. +.. .++. +++-+ ..+.+. + ..++.....+.+..+.. ..+
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~s-pf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~-~~~ 393 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQK-RVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYF-QAK 393 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTS-CCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHH-HCS
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCC-cCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHH-hCC
Confidence 689999999965 3355555533 221 1111 11111 111110 0 01234444444444443 345
Q ss_pred CCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEe--cccccccccC-
Q 012322 214 GDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST--NIAETSLTVD- 290 (466)
Q Consensus 214 ~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT--~~~~~Gidip- 290 (466)
|.+|||++|....+.+++. .+..+..-..+++.++..+.++ +++ .-|++|| ..+..|||+|
T Consensus 394 g~~lvlF~Sy~~l~~v~~~-------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~~EGiD~~d 457 (551)
T 3crv_A 394 ANVLVVFPSYEIMDRVMSR-------------ISLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKLAEGIELRN 457 (551)
T ss_dssp SEEEEEESCHHHHHHHHTT-------------CCSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCSCCSSCCEE
T ss_pred CCEEEEecCHHHHHHHHHh-------------cCCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEecceecccccccc
Confidence 7899999999999988862 1333444444566666555554 233 4799998 6999999999
Q ss_pred ----CeEEEEeCCcccceeecCC-----------C---CccccceeeecHHHHHHhccccCCCCC
Q 012322 291 ----GVVYVIDCGYVKQRQYNPS-----------S---GMYSLDVVQISKVQANQRVGRAGRTRP 337 (466)
Q Consensus 291 ----~v~~VI~~g~~~~~~~~~~-----------~---~~~~~~~~~~s~~~~~Qr~GRaGR~~~ 337 (466)
..+.||-.|+|-... ||. . ++......| ......|-+||+=|...
T Consensus 458 ~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~ 520 (551)
T 3crv_A 458 NDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVN 520 (551)
T ss_dssp TTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTT
T ss_pred cCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCC
Confidence 478999999986555 542 1 220001122 45567799999999843
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.49 E-value=1.5e-14 Score=133.78 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=85.1
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCC-cce-EEEEeccccccccc
Q 012322 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRR-FIVSTNIAETSLTV 289 (466)
Q Consensus 212 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g-~~~-ilvaT~~~~~Gidi 289 (466)
.+.++|||++++..++.+...|.+.. ++.+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl 181 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL---------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINL 181 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH---------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCC
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCc
Confidence 45799999999999999999998752 56677899999999999999999988 666 78999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccCCC---CCCeEEEecCccchhh
Q 012322 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTVYHD 351 (466)
Q Consensus 290 p~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaGR~---~~G~~~~l~~~~~~~~ 351 (466)
+++++||+++.|- +...+.||+||++|. ++-.+|+++++...+.
T Consensus 182 ~~a~~VI~~d~~w------------------np~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 182 TSANRVIHFDRWW------------------NPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp TTCSEEEECSCCS------------------CTTTC--------------CCEEEEEEETTSHHH
T ss_pred ccCCEEEEECCCC------------------ChhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 9999999987654 444677999999998 3445788887765544
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.25 E-value=1.3e-10 Score=119.98 Aligned_cols=129 Identities=12% Similarity=0.182 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEE
Q 012322 198 ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFI 277 (466)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~il 277 (466)
....+.+..+... .+|.++||++|....+.+++.++ . .... ...+++..+|..+++.|+ +...|+
T Consensus 434 ~~~~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~-~---------~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL 498 (620)
T 4a15_A 434 DRMATVIEDIILK-VKKNTIVYFPSYSLMDRVENRVS-F---------EHMK---EYRGIDQKELYSMLKKFR-RDHGTI 498 (620)
T ss_dssp HHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHTSSCC-S---------CCEE---CCTTCCSHHHHHHHHHHT-TSCCEE
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHH-h---------cchh---ccCCCChhHHHHHHHHhc-cCCcEE
Confidence 3334444444433 35789999999999998888775 2 1222 445566677888888888 888999
Q ss_pred EEec--ccccccccCC--eEEEEeCCcccceeecCC-------------CCccccceeeecHHHHHHhccccCCC--CCC
Q 012322 278 VSTN--IAETSLTVDG--VVYVIDCGYVKQRQYNPS-------------SGMYSLDVVQISKVQANQRVGRAGRT--RPG 338 (466)
Q Consensus 278 vaT~--~~~~Gidip~--v~~VI~~g~~~~~~~~~~-------------~~~~~~~~~~~s~~~~~Qr~GRaGR~--~~G 338 (466)
++|. .+..|||+|+ .+.||-.|+|-... ||. .++......| ......|-+||+=|. ..|
T Consensus 499 ~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G 576 (620)
T 4a15_A 499 FAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTG 576 (620)
T ss_dssp EEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCE
T ss_pred EEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceE
Confidence 9985 8999999987 57899899985432 221 1221000112 345667999999998 345
Q ss_pred eEEEe
Q 012322 339 KCYRL 343 (466)
Q Consensus 339 ~~~~l 343 (466)
..+.+
T Consensus 577 ~v~ll 581 (620)
T 4a15_A 577 ACVIL 581 (620)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
No 95
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.73 E-value=1e-08 Score=91.87 Aligned_cols=143 Identities=15% Similarity=0.093 Sum_probs=84.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHH---HH-HHHH---HHhCCccCCeeeeeEe--
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVS---VA-RRVA---QELGVRLGEEVGYAIR-- 86 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~---~~-~~~~---~~~~~~~~~~~g~~~~-- 86 (466)
+.+|+.+.|+||+||||||++..+.+...+..|...+...+.... ..+ .. +.++ +........++.....
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~ 106 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVP 106 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhH
Confidence 568999999999999999999999988776555433322221100 000 00 0000 0000000000000000
Q ss_pred ---------------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 87 ---------------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 87 ---------------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
..-....+..+--+|.|+.++..++...+.+++++++||+- ..+|......+++.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~ 185 (224)
T 2pcj_A 107 MLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPT-GNLDSANTKRVMDIFLK 185 (224)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTT-TTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCC-CCCCHHHHHHHHHHHHH
Confidence 00000012233348999999999999999999999999998 78898887776666655
Q ss_pred hhhcCceEEEEeccc
Q 012322 146 LRASKLKILITSATL 160 (466)
Q Consensus 146 ~~~~~~~ii~~SAT~ 160 (466)
....+..+|+.|+.+
T Consensus 186 l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 186 INEGGTSIVMVTHER 200 (224)
T ss_dssp HHHTTCEEEEECSCH
T ss_pred HHHCCCEEEEEcCCH
Confidence 544356777777754
No 96
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.71 E-value=9.8e-09 Score=97.72 Aligned_cols=144 Identities=18% Similarity=0.189 Sum_probs=86.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHH-------HhCCccCCeeeeeEee--
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ-------ELGVRLGEEVGYAIRF-- 87 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~-------~~~~~~~~~~g~~~~~-- 87 (466)
+.+|+.+.|+||+||||||++..+.+...++.|...+...+...........+.+ ........++..++.+
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~ 130 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL 130 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHH
Confidence 5689999999999999999999999988766554443332211100000000000 0000000000000000
Q ss_pred ---------------------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 88 ---------------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 88 ---------------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
.-....+...--+|.|+.++..+++.++.+++++++||+- ..+|......+++.+.+.
T Consensus 131 ~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPT-s~LD~~~~~~i~~lL~~l 209 (366)
T 3tui_C 131 ELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQAT-SALDPATTRSILELLKDI 209 (366)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHH
Confidence 0000011222337999999999999999999999999998 788888777765555544
Q ss_pred hh-cCceEEEEecccC
Q 012322 147 RA-SKLKILITSATLD 161 (466)
Q Consensus 147 ~~-~~~~ii~~SAT~~ 161 (466)
.. .+..+|+.|+.++
T Consensus 210 ~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 210 NRRLGLTILLITHEMD 225 (366)
T ss_dssp HHHSCCEEEEEESCHH
T ss_pred HHhCCCEEEEEecCHH
Confidence 33 2678888888654
No 97
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.71 E-value=6.4e-09 Score=95.82 Aligned_cols=144 Identities=19% Similarity=0.244 Sum_probs=87.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch---hHHHHHHHHHHH---HHhC-CccCCeeeeeEee--
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR---RVAAVSVARRVA---QELG-VRLGEEVGYAIRF-- 87 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~---~~l~~~~~~~~~---~~~~-~~~~~~~g~~~~~-- 87 (466)
+.+|+.+.|+||+||||||++..+.+...+..|...+...+. .....+..+.++ +... .....++.....+
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~ 110 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGA 110 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHH
Confidence 568999999999999999999999998776655444333222 100011111000 0000 0000000000000
Q ss_pred ---------------------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 88 ---------------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 88 ---------------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
.-....+..+.-+|.|+.++..++...+.+++++|+||+- ..+|......+++.+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPt-s~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 111 VNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT-AGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp HTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTT-TTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHH
Confidence 0000112233448999999999999999999999999998 788888777766555554
Q ss_pred h-hcCceEEEEecccC
Q 012322 147 R-ASKLKILITSATLD 161 (466)
Q Consensus 147 ~-~~~~~ii~~SAT~~ 161 (466)
. ..+..+|+.|+.++
T Consensus 190 ~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 190 QKELGITIIIATHDID 205 (275)
T ss_dssp HHHHCCEEEEEESCCS
T ss_pred HhhCCCEEEEEecCHH
Confidence 3 23678888888775
No 98
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.69 E-value=1.3e-08 Score=91.83 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=86.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHH----HH---HHHhCCccCCeeeeeE---
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVAR----RV---AQELGVRLGEEVGYAI--- 85 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~----~~---~~~~~~~~~~~~g~~~--- 85 (466)
+.+|+.+.|+||+||||||++..+.+...+..|...+...+.... ..+..+ .+ .+........++....
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~ 107 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELP 107 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHH
Confidence 568999999999999999999999998877655544433221110 001100 00 0000000000000000
Q ss_pred ---------ee--------------cccc-CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 86 ---------RF--------------EDRT-SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 86 ---------~~--------------~~~~-~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
.. .-.. ..+....-+|.|+.++..++...+.+++++++||+- ..+|......+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPt-s~LD~~~~~~i~~ 186 (235)
T 3tif_A 108 LIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT-WALDSKTGEKIMQ 186 (235)
T ss_dssp HHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHH
T ss_pred HHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHH
Confidence 00 0000 002223448999999999999999999999999998 7888888777666
Q ss_pred HHHHhhhc-CceEEEEecccC
Q 012322 142 RLVNLRAS-KLKILITSATLD 161 (466)
Q Consensus 142 ~i~~~~~~-~~~ii~~SAT~~ 161 (466)
.+.+.... +..+|+.|+.++
T Consensus 187 ~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 187 LLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHHHHCCEEEEECSCHH
T ss_pred HHHHHHHHcCCEEEEEcCCHH
Confidence 55554432 677888777653
No 99
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.68 E-value=6.4e-09 Score=94.89 Aligned_cols=143 Identities=19% Similarity=0.159 Sum_probs=83.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH----------------------HHHHHHHHHHHHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------------AAVSVARRVAQELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~----------------------l~~~~~~~~~~~~~ 74 (466)
+.+|+.+.|.||+||||||++..+++...+..|...+...+... .+.+.........+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 117 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA 117 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC
Confidence 56899999999999999999999998876654443332221110 01111110000011
Q ss_pred CccC---CeeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 75 VRLG---EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 75 ~~~~---~~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
.... ..+.... ...-....+..+.-+|.|+.++..++...+.+++++++||+- ..+|......+++.+.+....+
T Consensus 118 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g 196 (256)
T 1vpl_A 118 SSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT-SGLDVLNAREVRKILKQASQEG 196 (256)
T ss_dssp CCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cccCHHHHHHHHHHHHHHHhCC
Confidence 0000 0000000 000000012223348999999999999999999999999998 7899888777666665554335
Q ss_pred ceEEEEeccc
Q 012322 151 LKILITSATL 160 (466)
Q Consensus 151 ~~ii~~SAT~ 160 (466)
..+|+.|+.+
T Consensus 197 ~tiiivtHd~ 206 (256)
T 1vpl_A 197 LTILVSSHNM 206 (256)
T ss_dssp CEEEEEECCH
T ss_pred CEEEEEcCCH
Confidence 6777777654
No 100
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.65 E-value=1.3e-08 Score=90.10 Aligned_cols=143 Identities=22% Similarity=0.252 Sum_probs=83.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE-------------Ee-C-ch---hHHHHHHHHHHHHHhCCccC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-------------VT-Q-PR---RVAAVSVARRVAQELGVRLG 78 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~-------------~~-~-p~---~~l~~~~~~~~~~~~~~~~~ 78 (466)
+.+|+.+.|.||+||||||++..+++...+..|...+ ++ + |. ...+.+.........+....
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~ 111 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN 111 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchH
Confidence 5689999999999999999999999877655443222 11 1 10 00111211111111111000
Q ss_pred -CeeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEE
Q 012322 79 -EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (466)
Q Consensus 79 -~~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~ 156 (466)
..+.... .+.-... +..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+.+....+..+|+.
T Consensus 112 ~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~g~tiiiv 189 (214)
T 1sgw_A 112 KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV-VAIDEDSKHKVLKSILEILKEKGIVIIS 189 (214)
T ss_dssp HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT-TTSCTTTHHHHHHHHHHHHHHHSEEEEE
T ss_pred HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0000000 0000001 2334458999999999999999999999999998 6777776666555554443335678887
Q ss_pred ecccC
Q 012322 157 SATLD 161 (466)
Q Consensus 157 SAT~~ 161 (466)
|+.++
T Consensus 190 tHd~~ 194 (214)
T 1sgw_A 190 SREEL 194 (214)
T ss_dssp ESSCC
T ss_pred eCCHH
Confidence 87764
No 101
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.61 E-value=1.4e-08 Score=93.25 Aligned_cols=150 Identities=19% Similarity=0.136 Sum_probs=88.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHHHH---HHhCCccCCeeeeeEee-----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---QELGVRLGEEVGYAIRF----- 87 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~~~---~~~~~~~~~~~g~~~~~----- 87 (466)
+.+|+.+.|+||+||||||++..+++...+..|...+...+.... ..+..+.++ +........++.....+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence 568999999999999999999999998877766554443332111 111111100 00000000000000000
Q ss_pred ----------------ccccCccceEEEcCHHHHHHHHhhCCCCC------CCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 88 ----------------EDRTSERTLIKYLTDGVLLREILSNPDLS------PYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 88 ----------------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~------~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
.-....+..+--+|.|+.++..++...+. +++++++||+- ..+|......+++.+.+
T Consensus 114 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPt-s~LD~~~~~~i~~~l~~ 192 (266)
T 4g1u_C 114 GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT-SALDLYHQQHTLRLLRQ 192 (266)
T ss_dssp CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCC-SSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCcc-ccCCHHHHHHHHHHHHH
Confidence 00000122233489999999998888777 99999999998 78898887776665555
Q ss_pred hhhc-CceEEEEecccChhHHHhhc
Q 012322 146 LRAS-KLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 146 ~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (466)
.... +..+|+.|+.+ +.+..+.
T Consensus 193 l~~~~~~tvi~vtHdl--~~~~~~~ 215 (266)
T 4g1u_C 193 LTRQEPLAVCCVLHDL--NLAALYA 215 (266)
T ss_dssp HHHHSSEEEEEECSCH--HHHHHHC
T ss_pred HHHcCCCEEEEEEcCH--HHHHHhC
Confidence 4432 35677767754 3344443
No 102
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.60 E-value=4.4e-09 Score=96.28 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=86.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHH-HHH---------------HHHHhCCccCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSV-ARR---------------VAQELGVRLGE 79 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~-~~~---------------~~~~~~~~~~~ 79 (466)
+.+|+.+.|.||+||||||++..+.+...+..|...+...+.... ..+. .+. +.+........
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 109 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEIC 109 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhh
Confidence 568999999999999999999999998776555443332221100 0000 000 00000000000
Q ss_pred -eee-----------eeEe-----e-------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHH
Q 012322 80 -EVG-----------YAIR-----F-------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI 135 (466)
Q Consensus 80 -~~g-----------~~~~-----~-------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~ 135 (466)
..+ .... . .-....+..+--+|.|+.++..++...+.+++++++||+- ..+|...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPt-s~LD~~~ 188 (257)
T 1g6h_A 110 PGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI-AGVAPGL 188 (257)
T ss_dssp TTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT-TTCCHHH
T ss_pred hccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHH
Confidence 000 0000 0 0000012233448999999999988889999999999998 7899888
Q ss_pred HHHHHHHHHHhhhcCceEEEEecccC
Q 012322 136 LLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 136 ~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
...+++.+.+....+..+|+.|+.++
T Consensus 189 ~~~l~~~l~~l~~~g~tvi~vtHd~~ 214 (257)
T 1g6h_A 189 AHDIFNHVLELKAKGITFLIIEHRLD 214 (257)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 77766666555444677888888765
No 103
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.59 E-value=1.3e-08 Score=92.50 Aligned_cols=142 Identities=18% Similarity=0.183 Sum_probs=85.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHHHH---HHhCCccCCeeeeeEee-----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---QELGVRLGEEVGYAIRF----- 87 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~~~---~~~~~~~~~~~g~~~~~----- 87 (466)
+.+|+.+.|+||+||||||++..+++...+..|...+...+.... ..+..+.++ +..... ..++.....+
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~tv~enl~~~~~~~ 110 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLANPGM 110 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-TSBHHHHHTTTCTTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccc-cccHHHHHhccCCCC
Confidence 568999999999999999999999998776655444333332110 111111110 000000 0000000000
Q ss_pred --------------cc---cc------CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 88 --------------ED---RT------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 88 --------------~~---~~------~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
.. .. .......-+|.|+.++..++...+.+++++++||+- ..+|......+++.+.
T Consensus 111 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~ 189 (247)
T 2ff7_A 111 SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT-SALDYESEHVIMRNMH 189 (247)
T ss_dssp CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCC-SCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHH
Confidence 00 00 001112358999999999999999999999999998 7889888777666665
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
+.. .+..+|+.|+.++
T Consensus 190 ~~~-~g~tviivtH~~~ 205 (247)
T 2ff7_A 190 KIC-KGRTVIIIAHRLS 205 (247)
T ss_dssp HHH-TTSEEEEECSSGG
T ss_pred HHc-CCCEEEEEeCCHH
Confidence 553 3667888777654
No 104
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.59 E-value=2.1e-08 Score=91.77 Aligned_cols=150 Identities=18% Similarity=0.208 Sum_probs=86.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh---HHHHHHHHHHH---HHhCCccCCeeeeeE-----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR---VAAVSVARRVA---QELGVRLGEEVGYAI----- 85 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~---~l~~~~~~~~~---~~~~~~~~~~~g~~~----- 85 (466)
+.+|+.+.|+||+||||||++..+.+...+..|...+...+.. ....+..+.++ +........++....
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~ 126 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPM 126 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHH
Confidence 5689999999999999999999999887665444333222110 00000001000 000000000000000
Q ss_pred -----e--------------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHh
Q 012322 86 -----R--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 86 -----~--------------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~ 146 (466)
. ..-....+..+.-+|.|+.++..++...+.+++++++||+- ..+|......+++.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l 205 (263)
T 2olj_A 127 KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPT-SALDPEMVGEVLSVMKQL 205 (263)
T ss_dssp HTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHH
Confidence 0 00000012233348999999999999999999999999998 789988877766666555
Q ss_pred hhcCceEEEEecccChhHHHhhc
Q 012322 147 RASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 147 ~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
...+..+|+.|+.+ +.+..+.
T Consensus 206 ~~~g~tvi~vtHd~--~~~~~~~ 226 (263)
T 2olj_A 206 ANEGMTMVVVTHEM--GFAREVG 226 (263)
T ss_dssp HHTTCEEEEECSCH--HHHHHHC
T ss_pred HhCCCEEEEEcCCH--HHHHHhC
Confidence 44356677766654 3344443
No 105
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.58 E-value=1.7e-08 Score=91.39 Aligned_cols=143 Identities=20% Similarity=0.195 Sum_probs=84.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHH-H---HHHhCCccCCeeeeeE------
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARR-V---AQELGVRLGEEVGYAI------ 85 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~-~---~~~~~~~~~~~~g~~~------ 85 (466)
+.+|+.+.|.||+||||||++..+++...+..|...+...+.... ..+..++ + .+........++....
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~ 108 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN 108 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhc
Confidence 568999999999999999999999998766554433322221100 0000000 0 0000000000000000
Q ss_pred ---e-------------ec-cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh
Q 012322 86 ---R-------------FE-DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (466)
Q Consensus 86 ---~-------------~~-~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~ 148 (466)
. +. -....+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+.+...
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~ 187 (240)
T 1ji0_A 109 RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPS-LGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 0 00 000112233448999999999999999999999999998 78998887776666655443
Q ss_pred cCceEEEEeccc
Q 012322 149 SKLKILITSATL 160 (466)
Q Consensus 149 ~~~~ii~~SAT~ 160 (466)
.+..+|+.|+.+
T Consensus 188 ~g~tvi~vtHd~ 199 (240)
T 1ji0_A 188 EGTTILLVEQNA 199 (240)
T ss_dssp TTCCEEEEESCH
T ss_pred CCCEEEEEecCH
Confidence 366788877754
No 106
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.57 E-value=2.1e-07 Score=84.80 Aligned_cols=150 Identities=18% Similarity=0.212 Sum_probs=86.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcE-----EEEeCch-----hHHHHHHHHHHHHHh-CCc--cCCe---
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGVTQPR-----RVAAVSVARRVAQEL-GVR--LGEE--- 80 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~-----i~~~~p~-----~~l~~~~~~~~~~~~-~~~--~~~~--- 80 (466)
+.+|+.+.|.||+||||||++..+++...+..|.. +.++... ...+.+......... +.. ....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 107 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ 107 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHH
Confidence 56899999999999999999999999876654432 2222110 011111111000000 000 0000
Q ss_pred -eeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-CceEEEEe
Q 012322 81 -VGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITS 157 (466)
Q Consensus 81 -~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~S 157 (466)
+.... ...-....+..+.-+|.|+.++..++...+.+++++++||+- ..+|......+++.+...... +..+|+.|
T Consensus 108 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~~g~tvi~vt 186 (253)
T 2nq2_C 108 VAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPT-SALDLANQDIVLSLLIDLAQSQNMTVVFTT 186 (253)
T ss_dssp HHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS-TTSCHHHHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred HHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 00000 000000012233458999999999999999999999999998 789988877766666555443 56677777
Q ss_pred cccChhHHHhhc
Q 012322 158 ATLDGEKVSKFF 169 (466)
Q Consensus 158 AT~~~~~~~~~~ 169 (466)
+.+ +.+..+.
T Consensus 187 Hd~--~~~~~~~ 196 (253)
T 2nq2_C 187 HQP--NQVVAIA 196 (253)
T ss_dssp SCH--HHHHHHC
T ss_pred cCH--HHHHHhC
Confidence 654 3344444
No 107
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.54 E-value=7.8e-08 Score=89.79 Aligned_cols=141 Identities=20% Similarity=0.216 Sum_probs=83.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-HHHHHHH---HHhCCccCCeeeeeEeec----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QELGVRLGEEVGYAIRFE---- 88 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-~~~~~~~---~~~~~~~~~~~g~~~~~~---- 88 (466)
+..|+.+.|+|||||||||++..+++...+..|...+...+...... +..+.++ +.... ...++..++.+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~l-f~~Tv~eNi~~~~~~~ 155 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVL-FNDTIADNIRYGRVTA 155 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCC-CSEEHHHHHHTTSTTC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCcc-CcccHHHHHHhhcccC
Confidence 56899999999999999999999999887765554443333221111 1111000 00000 000000000000
Q ss_pred ------------------cccC------ccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 89 ------------------DRTS------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 89 ------------------~~~~------~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
.... ......-++.|+.++..+++..+.+++++|+||+- ..+|......+++.+.
T Consensus 156 ~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPt-s~LD~~~~~~i~~~l~ 234 (306)
T 3nh6_A 156 GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEAT-SALDTSNERAIQASLA 234 (306)
T ss_dssp CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS-SCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHH
Confidence 0000 00112347999999999999999999999999998 7888887777666665
Q ss_pred HhhhcCceEEEEeccc
Q 012322 145 NLRASKLKILITSATL 160 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~ 160 (466)
.... +..+|+.|+-+
T Consensus 235 ~l~~-~~Tvi~itH~l 249 (306)
T 3nh6_A 235 KVCA-NRTTIVVAHRL 249 (306)
T ss_dssp HHHT-TSEEEEECCSH
T ss_pred HHcC-CCEEEEEEcCh
Confidence 5544 56677666644
No 108
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.54 E-value=1.4e-07 Score=90.30 Aligned_cols=136 Identities=21% Similarity=0.232 Sum_probs=82.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE-----------------EeC-----chhHHHHHHHHHHHHHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-----------------VTQ-----PRRVAAVSVARRVAQELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~-----------------~~~-----p~~~l~~~~~~~~~~~~~ 74 (466)
+.+|+.+.+.||+||||||++..+++...++.|...+ +-+ |.......+. .-.+..+
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~-~~~~~~~ 104 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMS-FGLKLAG 104 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHT-HHHHHTT
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHH-HHHHHcC
Confidence 5689999999999999999999999987665443222 111 1100111110 0001011
Q ss_pred Ccc----------CCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 75 VRL----------GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 75 ~~~----------~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
... ...++ ... ..+...--+|.|+.++..+++..+.+++++++||+- ..+|......+...+.
T Consensus 105 ~~~~~~~~~v~~~l~~~~----L~~--~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt-s~LD~~~~~~l~~~l~ 177 (381)
T 3rlf_A 105 AKKEVINQRVNQVAEVLQ----LAH--LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL-SNLDAALRVQMRIEIS 177 (381)
T ss_dssp CCHHHHHHHHHHHHHHTT----CGG--GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT-TTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcC----Cch--hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC-cCCCHHHHHHHHHHHH
Confidence 000 00000 000 011223348999999999999999999999999998 7888887666555555
Q ss_pred Hhhhc-CceEEEEeccc
Q 012322 145 NLRAS-KLKILITSATL 160 (466)
Q Consensus 145 ~~~~~-~~~ii~~SAT~ 160 (466)
+.... +..+|+.|+.+
T Consensus 178 ~l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 178 RLHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp HHHHHHCCEEEEECSCH
T ss_pred HHHHhCCCEEEEEECCH
Confidence 44332 67788877754
No 109
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.53 E-value=3e-08 Score=91.34 Aligned_cols=142 Identities=21% Similarity=0.190 Sum_probs=84.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHHHH---HHhCCccCCeeeeeEee-----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---QELGVRLGEEVGYAIRF----- 87 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~~~---~~~~~~~~~~~g~~~~~----- 87 (466)
+..|+.+.|+||+||||||++..+++...+..|...+...+.... ..+..+.++ +..... ..++...+.+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~-~~tv~enl~~~~~~~ 120 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLF-GRSFRENIAYGLTRT 120 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-SSBHHHHHHTTCSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccc-cccHHHHHhhhcccC
Confidence 568999999999999999999999998776655444433332111 111111110 000000 0000000000
Q ss_pred ---c---------------------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 88 ---E---------------------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 88 ---~---------------------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
. -....+....-+|.|+.++..++..++.+++++++||+- ..+|......+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l 199 (271)
T 2ixe_A 121 PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNAT-SALDAGNQLRVQRLL 199 (271)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHH
Confidence 0 000011223348999999999999999999999999998 789998877766666
Q ss_pred HHhhh-cCceEEEEeccc
Q 012322 144 VNLRA-SKLKILITSATL 160 (466)
Q Consensus 144 ~~~~~-~~~~ii~~SAT~ 160 (466)
..... .+..+|+.|+.+
T Consensus 200 ~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 200 YESPEWASRTVLLITQQL 217 (271)
T ss_dssp HHCTTTTTSEEEEECSCH
T ss_pred HHHHhhcCCEEEEEeCCH
Confidence 55432 256677776654
No 110
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.51 E-value=9.3e-09 Score=94.33 Aligned_cols=61 Identities=13% Similarity=0.258 Sum_probs=48.5
Q ss_pred EcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 99 ~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
-+|.|+.++..++...+.+++++++||+- ..+|......+++.+......+..+|+.|+.+
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 213 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPT-SALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 48999999999998899999999999998 78998887776666555444356777777754
No 111
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.50 E-value=5.1e-07 Score=82.90 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=85.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH------------------HHHHHHHHHHHhCCccC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA------------------AVSVARRVAQELGVRLG 78 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l------------------~~~~~~~~~~~~~~~~~ 78 (466)
+.+|+.+.|+||+||||||++..+.+...+..|...+...+.... ...+.+.+.-.......
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~ 109 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP 109 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCC
Confidence 568999999999999999999999988766544433222111000 00011111100000000
Q ss_pred C-e----eeeeE-eeccc--cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcC
Q 012322 79 E-E----VGYAI-RFEDR--TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (466)
Q Consensus 79 ~-~----~g~~~-~~~~~--~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~ 150 (466)
. . +.... ...-. ...+..+.-+|.|+.++..+....+.+++++++||+- ..+|......+++.+.+....+
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g 188 (266)
T 2yz2_A 110 DRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL-VGLDREGKTDLLRIVEKWKTLG 188 (266)
T ss_dssp TSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHcC
Confidence 0 0 00000 00000 0011223348999999999999999999999999998 7899988777666665554336
Q ss_pred ceEEEEecccC
Q 012322 151 LKILITSATLD 161 (466)
Q Consensus 151 ~~ii~~SAT~~ 161 (466)
..+|+.|+.++
T Consensus 189 ~tii~vtHd~~ 199 (266)
T 2yz2_A 189 KTVILISHDIE 199 (266)
T ss_dssp CEEEEECSCCT
T ss_pred CEEEEEeCCHH
Confidence 67888787664
No 112
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.50 E-value=3.2e-07 Score=87.26 Aligned_cols=141 Identities=20% Similarity=0.190 Sum_probs=81.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE-----------------EeCch----hHHHHHHHHHHHHHhCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-----------------VTQPR----RVAAVSVARRVAQELGV 75 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~-----------------~~~p~----~~l~~~~~~~~~~~~~~ 75 (466)
+.+|+.+.+.||+||||||++..+++...++.|...+ +-+.. ...+.+....-.+..+.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~ 117 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRV 117 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence 5689999999999999999999999987654433222 11100 00011111100011110
Q ss_pred ccC---Ceeee---eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc
Q 012322 76 RLG---EEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (466)
Q Consensus 76 ~~~---~~~g~---~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~ 149 (466)
... ..+.. ...... ..+...--+|.|+.++..++...+.+++++++||+- ..+|......+...+.+....
T Consensus 118 ~~~~~~~~v~~~l~~~gL~~--~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~ 194 (355)
T 1z47_A 118 PKDEMDARVRELLRFMRLES--YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPF-AAIDTQIRRELRTFVRQVHDE 194 (355)
T ss_dssp CHHHHHHHHHHHHHHTTCGG--GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT-CCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChh--HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHh
Confidence 000 00000 000000 011223348999999999999999999999999998 788888777655555544332
Q ss_pred -CceEEEEeccc
Q 012322 150 -KLKILITSATL 160 (466)
Q Consensus 150 -~~~ii~~SAT~ 160 (466)
+..+|+.|+.+
T Consensus 195 ~g~tvi~vTHd~ 206 (355)
T 1z47_A 195 MGVTSVFVTHDQ 206 (355)
T ss_dssp HTCEEEEECSCH
T ss_pred cCCEEEEECCCH
Confidence 56777776654
No 113
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.49 E-value=3.2e-07 Score=87.23 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=83.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeC----------chhH---HH---------HHHHHHHHHHhC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ----------PRRV---AA---------VSVARRVAQELG 74 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~----------p~~~---l~---------~~~~~~~~~~~~ 74 (466)
+.+|+.+.+.||+||||||++..+.+...++.|...+... |.+. .+ ..+.+.+. ++
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~--~~ 104 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIA--YG 104 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHH--TT
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHH--HH
Confidence 5689999999999999999999999987765544322111 1000 00 00111110 01
Q ss_pred CccCCeeeeeE--e-------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHH
Q 012322 75 VRLGEEVGYAI--R-------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (466)
Q Consensus 75 ~~~~~~~g~~~--~-------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~ 145 (466)
........... + ..-....+....-+|.|+.++..+++..+.+++++++||+- ..+|......+...+.+
T Consensus 105 l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPt-s~LD~~~r~~l~~~l~~ 183 (359)
T 3fvq_A 105 LGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPF-SALDEQLRRQIREDMIA 183 (359)
T ss_dssp STTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHH
Confidence 00000000000 0 00000012223348999999999999999999999999998 78888877776555554
Q ss_pred hhh-cCceEEEEecccC
Q 012322 146 LRA-SKLKILITSATLD 161 (466)
Q Consensus 146 ~~~-~~~~ii~~SAT~~ 161 (466)
... .+..+|+.|+.++
T Consensus 184 ~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 184 ALRANGKSAVFVSHDRE 200 (359)
T ss_dssp HHHHTTCEEEEECCCHH
T ss_pred HHHhCCCEEEEEeCCHH
Confidence 432 3677888777543
No 114
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.49 E-value=4.5e-07 Score=93.42 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=77.4
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcC---cCCCcEEEEeCchhHHHHHHHHHHHH---HhCCccCCee
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG---YTKSGIIGVTQPRRVAAVSVARRVAQ---ELGVRLGEEV 81 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~---~~~~~~i~~~~p~~~l~~~~~~~~~~---~~~~~~~~~~ 81 (466)
..|.+.+..+..++++++.|++||||||++..++.... ...+.+++++.|+..++.++.+.+.. .++.......
T Consensus 152 ~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~~ 231 (608)
T 1w36_D 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKK 231 (608)
T ss_dssp CHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHHh
Confidence 45777778888899999999999999977665544332 12355888999999999888776543 2222110000
Q ss_pred eeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEec
Q 012322 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (466)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (466)
+ ..... ..-..++-.+++.. ..........+++++||||++ +++... +..++...+.+.++|++.=
T Consensus 232 ~--~~~~~--~Tih~ll~~~~~~~-~~~~~~~~~l~~d~lIIDEAs--ml~~~~----~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 232 R--IPEDA--STLHRLLGAQPGSQ-RLRHHAGNPLHLDVLVVDEAS--MIDLPM----MSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp S--CSCCC--BTTTSCC------------CTTSCCSCSEEEECSGG--GCBHHH----HHHHHHTCCTTCEEEEEEC
T ss_pred c--cchhh--hhhHhhhccCCCch-HHHhccCCCCCCCEEEEechh--hCCHHH----HHHHHHhCCCCCEEEEEcc
Confidence 0 00000 00011111222211 111111122378999999999 555443 3444555555778888753
No 115
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.49 E-value=3.8e-07 Score=87.09 Aligned_cols=143 Identities=17% Similarity=0.121 Sum_probs=82.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE-----------------EeCch----hHHHHHHHHHHHHHhCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-----------------VTQPR----RVAAVSVARRVAQELGV 75 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~-----------------~~~p~----~~l~~~~~~~~~~~~~~ 75 (466)
+.+|+.+.+.||+||||||++..+++...++.|...+ +-+.. ...+.+....-.+..+.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 105 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA 105 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 5689999999999999999999999987655433222 11100 00011111000000010
Q ss_pred ccC---CeeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc-C
Q 012322 76 RLG---EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-K 150 (466)
Q Consensus 76 ~~~---~~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~-~ 150 (466)
... ..+.... ...-....+...--+|.|+.++..+++..+.+++++++||+- ..+|......+...+.+.... +
T Consensus 106 ~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g 184 (362)
T 2it1_A 106 PREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL-SNLDALLRLEVRAELKRLQKELG 184 (362)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG-GGSCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHHhCC
Confidence 000 0000000 000000011223348999999999999999999999999998 788888877655555544332 6
Q ss_pred ceEEEEeccc
Q 012322 151 LKILITSATL 160 (466)
Q Consensus 151 ~~ii~~SAT~ 160 (466)
..+|+.|+.+
T Consensus 185 ~tvi~vTHd~ 194 (362)
T 2it1_A 185 ITTVYVTHDQ 194 (362)
T ss_dssp CEEEEEESCH
T ss_pred CEEEEECCCH
Confidence 6788877754
No 116
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.48 E-value=2.3e-07 Score=85.69 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=84.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh--H-HHHHHHHHH---HHH----hCC--ccCCeeee-
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR--V-AAVSVARRV---AQE----LGV--RLGEEVGY- 83 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~--~-l~~~~~~~~---~~~----~~~--~~~~~~g~- 83 (466)
+.+|+.+.|+||+||||||++..+++...+..|...+...+.. . ...+..+.+ .+. +.. ++...+.+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~ 123 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISG 123 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhh
Confidence 5689999999999999999999999987765554433322211 0 000000000 000 000 10000000
Q ss_pred --------eE-eec-------------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 84 --------AI-RFE-------------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 84 --------~~-~~~-------------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
.. ..+ -....+..+--+|.|+.++..++...+.+++++++||+- ..+|......+++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPt-s~LD~~~~~~l~~ 202 (279)
T 2ihy_A 124 AFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPA-AGLDFIARESLLS 202 (279)
T ss_dssp C---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT-TTCCHHHHHHHHH
T ss_pred hhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc-cccCHHHHHHHHH
Confidence 00 000 000012233448999999999999899999999999998 7888888777666
Q ss_pred HHHHhhhcCceE--EEEecccC
Q 012322 142 RLVNLRASKLKI--LITSATLD 161 (466)
Q Consensus 142 ~i~~~~~~~~~i--i~~SAT~~ 161 (466)
.+.+....+..+ |+.|+.++
T Consensus 203 ~l~~l~~~g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 203 ILDSLSDSYPTLAMIYVTHFIE 224 (279)
T ss_dssp HHHHHHHHCTTCEEEEEESCGG
T ss_pred HHHHHHHCCCEEEEEEEecCHH
Confidence 555543335567 77777653
No 117
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.48 E-value=1.9e-08 Score=91.30 Aligned_cols=149 Identities=23% Similarity=0.222 Sum_probs=86.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHHHH---HHhCCccCCeeeeeEee-----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---QELGVRLGEEVGYAIRF----- 87 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~~~---~~~~~~~~~~~g~~~~~----- 87 (466)
+.+|+.+.|.||+||||||++..+++...+. |...+...+.... ..+..+.++ +........++.....+
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 101 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK 101 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSST
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccC
Confidence 5689999999999999999999999988776 5443333332111 111111110 00000000000000000
Q ss_pred --cc-----------ccCccceEEEcCHHHHHHHHhhCCCCCCCc-------EEEecCCCccccCHHHHHHHHHHHHHhh
Q 012322 88 --ED-----------RTSERTLIKYLTDGVLLREILSNPDLSPYS-------VIILDEAHERSLNTDILLGLVKRLVNLR 147 (466)
Q Consensus 88 --~~-----------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~-------~iIiDEah~~~~~~~~~~~~l~~i~~~~ 147 (466)
.. ....+..+.-+|.|+.++..+....+.+++ ++++||+- ..+|......+++.+.+..
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPt-s~LD~~~~~~l~~~l~~l~ 180 (249)
T 2qi9_C 102 TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM-NSLDVAQQSALDKILSALS 180 (249)
T ss_dssp TCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTT-TTCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCc-ccCCHHHHHHHHHHHHHHH
Confidence 00 000122333489999999998888888888 99999998 7889888777666665554
Q ss_pred hcCceEEEEecccChhHHHhhc
Q 012322 148 ASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 148 ~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
..+..+|+.|+.+ +.+..+.
T Consensus 181 ~~g~tviivtHd~--~~~~~~~ 200 (249)
T 2qi9_C 181 QQGLAIVMSSHDL--NHTLRHA 200 (249)
T ss_dssp HTTCEEEEECSCH--HHHHHHC
T ss_pred hCCCEEEEEeCCH--HHHHHhC
Confidence 3356677766654 3344443
No 118
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.45 E-value=3.9e-07 Score=86.92 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=82.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc------hh----------HH--HHHHHHHHHHHhCCccC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP------RR----------VA--AVSVARRVAQELGVRLG 78 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p------~~----------~l--~~~~~~~~~~~~~~~~~ 78 (466)
+.+|+.+.+.||+||||||++..+++...++.|...+...+ .+ .+ -..+.+.+. ++....
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~--~~~~~~ 103 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIA--FPLRAR 103 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHH--GGGSSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHH--HHHHhc
Confidence 56899999999999999999999999876654433221111 00 00 000111110 000000
Q ss_pred C--------eeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc
Q 012322 79 E--------EVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (466)
Q Consensus 79 ~--------~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~ 149 (466)
. .+.... ...-....+....-+|.|+.++..+++..+.+++++++||+- ..+|......+...+.+....
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~ 182 (359)
T 2yyz_A 104 RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL-SNLDANLRMIMRAEIKHLQQE 182 (359)
T ss_dssp CSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHh
Confidence 0 000000 000000011223348999999999999999999999999998 788888777655555544332
Q ss_pred -CceEEEEeccc
Q 012322 150 -KLKILITSATL 160 (466)
Q Consensus 150 -~~~ii~~SAT~ 160 (466)
+..+|+.|+.+
T Consensus 183 ~g~tvi~vTHd~ 194 (359)
T 2yyz_A 183 LGITSVYVTHDQ 194 (359)
T ss_dssp HCCEEEEEESCH
T ss_pred cCCEEEEEcCCH
Confidence 66788877754
No 119
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.43 E-value=4.4e-07 Score=81.85 Aligned_cols=141 Identities=21% Similarity=0.155 Sum_probs=81.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH---------H---------HHHHHHHHHHhCCccC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA---------A---------VSVARRVAQELGVRLG 78 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l---------~---------~~~~~~~~~~~~~~~~ 78 (466)
+.+ +.+.|.||+||||||++..+.+...+..|...+...+.... + ..+.+.+. ++....
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~--~~~~~~ 98 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA--YGLRNV 98 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH--TTCTTS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHH--HHHHHc
Confidence 456 88999999999999999999998766544433221110000 0 00000000 000000
Q ss_pred CeeeeeEe-------eccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cC
Q 012322 79 EEVGYAIR-------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SK 150 (466)
Q Consensus 79 ~~~g~~~~-------~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~ 150 (466)
........ +.-....+..+--+|.|+.++..++...+.+++++++||+- ..+|......+++.+.+... .+
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~~g 177 (240)
T 2onk_A 99 ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL-SAVDLKTKGVLMEELRFVQREFD 177 (240)
T ss_dssp CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT-SSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcC
Confidence 00000000 00000012223348999999999999999999999999998 78898887776665555433 25
Q ss_pred ceEEEEecccC
Q 012322 151 LKILITSATLD 161 (466)
Q Consensus 151 ~~ii~~SAT~~ 161 (466)
..+|+.|+.++
T Consensus 178 ~tvi~vtHd~~ 188 (240)
T 2onk_A 178 VPILHVTHDLI 188 (240)
T ss_dssp CCEEEEESCHH
T ss_pred CEEEEEeCCHH
Confidence 67888777543
No 120
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.43 E-value=1.6e-07 Score=85.20 Aligned_cols=142 Identities=20% Similarity=0.149 Sum_probs=79.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHHHH--------------HHHHHhCCccCCee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVAR--------------RVAQELGVRLGEEV 81 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~~~--------------~~~~~~~~~~~~~~ 81 (466)
+..|+.+.|+||+||||||++..+.+...+..|...+...+..... .+..+ .+.+..........
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~ 104 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDY 104 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCC
Confidence 5689999999999999999999999987766555443222110000 00000 00111100000000
Q ss_pred ee-eE-------eeccccC---------ccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 82 GY-AI-------RFEDRTS---------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 82 g~-~~-------~~~~~~~---------~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
.. .. ....... ......-+|.|+.++..++...+.+++++++||+- ..+|......+++.+.
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPt-s~LD~~~~~~i~~~l~ 183 (243)
T 1mv5_A 105 TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEAT-ASLDSESESMVQKALD 183 (243)
T ss_dssp CHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS-CSSCSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHH
Confidence 00 00 0000000 01123458999999999998889999999999987 5676665444444443
Q ss_pred HhhhcCceEEEEeccc
Q 012322 145 NLRASKLKILITSATL 160 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~ 160 (466)
... .+..+|+.|+.+
T Consensus 184 ~~~-~~~tvi~vtH~~ 198 (243)
T 1mv5_A 184 SLM-KGRTTLVIAHRL 198 (243)
T ss_dssp HHH-TTSEEEEECCSH
T ss_pred Hhc-CCCEEEEEeCCh
Confidence 333 366777777754
No 121
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.43 E-value=6.8e-07 Score=85.80 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=82.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEE------------eCchh---------------HHHHHHHHHH
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV------------TQPRR---------------VAAVSVARRV 69 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~------------~~p~~---------------~l~~~~~~~~ 69 (466)
+.+|+.+.+.||+||||||++..+++...++.|...+. ..|.+ ..+.+.....
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~ 105 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP 105 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHH
Confidence 56899999999999999999999999876654432221 11110 0011111100
Q ss_pred HHHhCCccC---Ceeee---eEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 70 AQELGVRLG---EEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 70 ~~~~~~~~~---~~~g~---~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
.+..+.... ..+.. ...... ..+...--+|.|+.++..++..++.+++++++||+- ..+|......+...+
T Consensus 106 ~~~~~~~~~~~~~~v~~~l~~~~L~~--~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l 182 (372)
T 1g29_1 106 LKLRKVPRQEIDQRVREVAELLGLTE--LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPL-SNLDAKLRVRMRAEL 182 (372)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHTCGG--GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT-TTSCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCch--HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCC-ccCCHHHHHHHHHHH
Confidence 011110000 00000 000000 011223348999999999999999999999999998 788888877655555
Q ss_pred HHhhh-cCceEEEEeccc
Q 012322 144 VNLRA-SKLKILITSATL 160 (466)
Q Consensus 144 ~~~~~-~~~~ii~~SAT~ 160 (466)
.+... .+..+|+.|+.+
T Consensus 183 ~~l~~~~g~tvi~vTHd~ 200 (372)
T 1g29_1 183 KKLQRQLGVTTIYVTHDQ 200 (372)
T ss_dssp HHHHHHHTCEEEEEESCH
T ss_pred HHHHHhcCCEEEEECCCH
Confidence 54433 267788877754
No 122
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.42 E-value=2e-07 Score=95.76 Aligned_cols=143 Identities=22% Similarity=0.267 Sum_probs=87.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHHHHHH---HHH---hCCccCCeeeeeE--ee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRV---AQE---LGVRLGEEVGYAI--RF 87 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~~~~~---~~~---~~~~~~~~~g~~~--~~ 87 (466)
+.+|+.+.++||+||||||++..+++...++.|...+...+..... .+..+.+ .+. +..++.+.+.+.. ..
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 445 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEY 445 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCC
Confidence 5689999999999999999999999988777665544443322110 1111100 000 0000000000000 00
Q ss_pred -cc----------------cc------CccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 88 -ED----------------RT------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 88 -~~----------------~~------~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
+. .. .-..+..-+|.|+.++..+++..+.+++++++||+- ..+|......+.+.+.
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~ 524 (582)
T 3b5x_A 446 TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT-SALDTESERAIQAALD 524 (582)
T ss_pred CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHH
Confidence 00 00 001122358999999999999999999999999998 7889888777666665
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
+... +..+|+.|+.++
T Consensus 525 ~~~~-~~tvi~itH~~~ 540 (582)
T 3b5x_A 525 ELQK-NKTVLVIAHRLS 540 (582)
T ss_pred HHcC-CCEEEEEecCHH
Confidence 5543 667788777653
No 123
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.41 E-value=2.4e-07 Score=88.00 Aligned_cols=143 Identities=18% Similarity=0.116 Sum_probs=84.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh---------------------HHHHHHHHHHHHHhCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR---------------------VAAVSVARRVAQELGV 75 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~---------------------~l~~~~~~~~~~~~~~ 75 (466)
+.+|+.+.+.||+||||||++..+++...++.|...+...+.. ..+.+......+..+.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~ 102 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI 102 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence 5689999999999999999999999987765544332111100 0011111000011110
Q ss_pred ccCCeeeeeE-eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceE
Q 012322 76 RLGEEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKI 153 (466)
Q Consensus 76 ~~~~~~g~~~-~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~i 153 (466)
.....+.... ...-....+...--+|.|+.++..+++..+.+++++++||+- ..+|......+...+.+... .+..+
T Consensus 103 ~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~-s~LD~~~~~~l~~~l~~l~~~~g~ti 181 (348)
T 3d31_A 103 KDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL-SALDPRTQENAREMLSVLHKKNKLTV 181 (348)
T ss_dssp CCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS-TTSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 0000000000 000000112223348999999999999999999999999998 78888887776555555433 25678
Q ss_pred EEEeccc
Q 012322 154 LITSATL 160 (466)
Q Consensus 154 i~~SAT~ 160 (466)
|+.|+.+
T Consensus 182 i~vTHd~ 188 (348)
T 3d31_A 182 LHITHDQ 188 (348)
T ss_dssp EEEESCH
T ss_pred EEEeCCH
Confidence 8877754
No 124
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.41 E-value=1.3e-08 Score=97.68 Aligned_cols=141 Identities=16% Similarity=0.227 Sum_probs=81.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeC------chhH---HHHH---------HHHHHHHHhCCccC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ------PRRV---AAVS---------VARRVAQELGVRLG 78 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~------p~~~---l~~~---------~~~~~~~~~~~~~~ 78 (466)
+.+|+.+.+.||+||||||++..+++...++.|...+... |.+. .+-| +.+.+. ++....
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~--~~~~~~ 111 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIA--FPLKIK 111 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHH--TTCC--
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHH--HHHHhc
Confidence 5689999999999999999999999987665443322111 1000 0000 011110 010000
Q ss_pred Ceeeee--Eee-------ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhc
Q 012322 79 EEVGYA--IRF-------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (466)
Q Consensus 79 ~~~g~~--~~~-------~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~ 149 (466)
...... .+. .-....+...--+|.|+.++..+++..+.+++++++||+- ..+|......+...+.+....
T Consensus 112 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~ 190 (372)
T 1v43_A 112 KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL-SNLDAKLRVAMRAEIKKLQQK 190 (372)
T ss_dssp CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHh
Confidence 000000 000 0000011222337899999999999999999999999998 788888877665555544332
Q ss_pred -CceEEEEeccc
Q 012322 150 -KLKILITSATL 160 (466)
Q Consensus 150 -~~~ii~~SAT~ 160 (466)
+..+|+.|+.+
T Consensus 191 ~g~tvi~vTHd~ 202 (372)
T 1v43_A 191 LKVTTIYVTHDQ 202 (372)
T ss_dssp HTCEEEEEESCH
T ss_pred CCCEEEEEeCCH
Confidence 56788877754
No 125
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.41 E-value=2.8e-08 Score=90.57 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=45.2
Q ss_pred cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
+|.|+.++..+....+.+++++++||+- ..+|......+++.+.+....+..+|+.|+.++
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETD-SGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGG-GTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 7899999999988888999999999998 789988877766666555433567788777654
No 126
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.40 E-value=1.7e-07 Score=85.77 Aligned_cols=138 Identities=17% Similarity=0.098 Sum_probs=80.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE----------------EeCchhH---HHHHHHHHHHHHhCCcc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG----------------VTQPRRV---AAVSVARRVAQELGVRL 77 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~----------------~~~p~~~---l~~~~~~~~~~~~~~~~ 77 (466)
+. |+.+.|.||+||||||++..+++.. +..|...+ ++..... .+.+.............
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~ 105 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDR 105 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCH
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHH
Confidence 56 8999999999999999999999887 65443222 1111100 11111111111000000
Q ss_pred CCeeeee-Eeeccc-cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 78 GEEVGYA-IRFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 78 ~~~~g~~-~~~~~~-~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
..+... ....-. ...+..+.-+|.|+.++..++...+.+++++++||+- ..+|......+++.+.+. . + .+|+
T Consensus 106 -~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~L~~~-~-~-tvii 180 (263)
T 2pjz_A 106 -DLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF-ENVDAARRHVISRYIKEY-G-K-EGIL 180 (263)
T ss_dssp -HHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT-TTCCHHHHHHHHHHHHHS-C-S-EEEE
T ss_pred -HHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc-cccCHHHHHHHHHHHHHh-c-C-cEEE
Confidence 000000 000000 0012233358999999999999899999999999998 789988877765555443 3 3 6777
Q ss_pred EecccC
Q 012322 156 TSATLD 161 (466)
Q Consensus 156 ~SAT~~ 161 (466)
.|+.++
T Consensus 181 vtHd~~ 186 (263)
T 2pjz_A 181 VTHELD 186 (263)
T ss_dssp EESCGG
T ss_pred EEcCHH
Confidence 777653
No 127
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.39 E-value=1.2e-07 Score=85.21 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=81.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEE-----EEeCch-h---HHHHHHHH-----------HHHHHhCCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-----GVTQPR-R---VAAVSVAR-----------RVAQELGVR 76 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i-----~~~~p~-~---~l~~~~~~-----------~~~~~~~~~ 76 (466)
+.+|+.+.|+||+||||||++..+++...+..|... .++... . ..+.+... ...+..+..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~ 110 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLE 110 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcH
Confidence 468999999999999999999999998776554422 122110 0 01111110 000111110
Q ss_pred cCCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEE
Q 012322 77 LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (466)
Q Consensus 77 ~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~ 156 (466)
. ... ...............-+|.|+.++..++...+.+++++++||+- ..+|......+++.++.....+..+|+.
T Consensus 111 ~--~~~-~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~~tvi~v 186 (229)
T 2pze_A 111 E--DIS-KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF-GYLDVLTEKEIFESCVCKLMANKTRILV 186 (229)
T ss_dssp H--HHT-TSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT-TTSCHHHHHHHHHHCCCCCTTTSEEEEE
T ss_pred H--HHH-hCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc-cCCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 0 000 00000000001123358999999999999999999999999998 7899888777555433222235667777
Q ss_pred eccc
Q 012322 157 SATL 160 (466)
Q Consensus 157 SAT~ 160 (466)
|+.+
T Consensus 187 tH~~ 190 (229)
T 2pze_A 187 TSKM 190 (229)
T ss_dssp CCCH
T ss_pred cCCh
Confidence 6654
No 128
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.39 E-value=1.1e-07 Score=85.68 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=83.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEE-----EEe-Cchh---HHHHHHH-----------HHHHHHhCCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-----GVT-QPRR---VAAVSVA-----------RRVAQELGVR 76 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i-----~~~-~p~~---~l~~~~~-----------~~~~~~~~~~ 76 (466)
+.+|+.+.|+||+||||||++..+++...+..|... .++ +... ..+.+.. .++.+..+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~ 107 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhH
Confidence 568999999999999999999999988765544321 122 2100 0111110 0011111000
Q ss_pred cCCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH--HhhhcCceEE
Q 012322 77 LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV--NLRASKLKIL 154 (466)
Q Consensus 77 ~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~--~~~~~~~~ii 154 (466)
..++.. ........+....-+|.|+.++..++...+.+++++++||+- ..+|......+++.+. .....+..+|
T Consensus 108 --~~~~~~-~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~~~~tvi 183 (237)
T 2cbz_A 108 --PDLEIL-PSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL-SAVDAHVGKHIFENVIGPKGMLKNKTRI 183 (237)
T ss_dssp --HHHTTS-TTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT-TTSCHHHHHHHHHHTTSTTSTTTTSEEE
T ss_pred --HHHHhc-cccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc-cccCHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 000000 000000011234458999999999999899999999999998 7899888777666553 1222366788
Q ss_pred EEecccC
Q 012322 155 ITSATLD 161 (466)
Q Consensus 155 ~~SAT~~ 161 (466)
+.|+.++
T Consensus 184 ivtH~~~ 190 (237)
T 2cbz_A 184 LVTHSMS 190 (237)
T ss_dssp EECSCST
T ss_pred EEecChH
Confidence 8888765
No 129
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.38 E-value=5.9e-07 Score=85.67 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=47.4
Q ss_pred EcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceEEEEeccc
Q 012322 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (466)
Q Consensus 99 ~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SAT~ 160 (466)
-+|.|+.++..++...+.+++++++||+- ..+|......+...+.+... .+..+|+.|+.+
T Consensus 140 ~LSGGq~QRvalAraL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 201 (353)
T 1oxx_K 140 ELSGAQQQRVALARALVKDPSLLLLDEPF-SNLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201 (353)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 48999999999999999999999999988 77888776665555544432 256788877754
No 130
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.37 E-value=8e-07 Score=91.21 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=88.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHH-HHHHHHH---HHhCCccCCeeeeeEeec----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QELGVRLGEEVGYAIRFE---- 88 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~-~~~~~~~---~~~~~~~~~~~g~~~~~~---- 88 (466)
+..|+.+.++|||||||||++..+++...+..|...+...+.+.... +..++++ +..... ..++..+..+.
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~ 444 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF-SGTIKENLKWGREDA 444 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCC-SEEHHHHHTTTCSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCc-CccHHHHHhccCCCC
Confidence 56799999999999999999999999887766655554544332211 1111110 000000 00000000000
Q ss_pred ------------------cccCc------cceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 89 ------------------DRTSE------RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 89 ------------------~~~~~------~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
..... .....-.|.|+.++..+++..+.+++++++||+- ..+|......+.+.+.
T Consensus 445 ~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpt-s~LD~~~~~~i~~~l~ 523 (587)
T 3qf4_A 445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT-SSVDPITEKRILDGLK 523 (587)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCC-TTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHH
Confidence 00000 1112237999999999999999999999999998 7889888777666665
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
+... +..+|+.|+-++
T Consensus 524 ~~~~-~~tvi~itH~l~ 539 (587)
T 3qf4_A 524 RYTK-GCTTFIITQKIP 539 (587)
T ss_dssp HHST-TCEEEEEESCHH
T ss_pred HhCC-CCEEEEEecChH
Confidence 5543 777888777654
No 131
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.37 E-value=9.7e-08 Score=98.31 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=87.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHHHHHHH---HHhCCccCCeeeeeEeecc---
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QELGVRLGEEVGYAIRFED--- 89 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~~~~~~---~~~~~~~~~~~g~~~~~~~--- 89 (466)
+.+|+.+.++|||||||||++..+++...+..|...+...+.+... .+..+.++ +..... ..++..+..+..
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~ 456 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF-STTVKENLKYGNPGA 456 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCC-SSBHHHHHHSSSTTC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccc-cccHHHHHhcCCCCC
Confidence 5689999999999999999999999988776665555444432221 11111110 000000 001100000000
Q ss_pred -------------------ccCccc------eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 90 -------------------RTSERT------LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 90 -------------------~~~~~~------~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
....+. .-.-.|.|+.++..+++..+.+++++++||+- ..+|......+.+.+.
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~ 535 (598)
T 3qf4_B 457 TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT-SNVDTKTEKSIQAAMW 535 (598)
T ss_dssp CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCC-TTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHH
Confidence 000000 01237999999999999999999999999998 7889888777666665
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
+... +..+|+.|+-++
T Consensus 536 ~~~~-~~t~i~itH~l~ 551 (598)
T 3qf4_B 536 KLME-GKTSIIIAHRLN 551 (598)
T ss_dssp HHHT-TSEEEEESCCTT
T ss_pred HHcC-CCEEEEEecCHH
Confidence 5543 777888888765
No 132
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.35 E-value=7.2e-07 Score=81.92 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=48.6
Q ss_pred cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
+|.|+.++..++...+.+++++++||+- ..+|......+++.+.+....+..+|+.|+.++
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESD-SGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTT-TTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 8999999999988889999999999998 789988887766666554433566777777543
No 133
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.34 E-value=8.1e-08 Score=87.94 Aligned_cols=62 Identities=24% Similarity=0.284 Sum_probs=49.1
Q ss_pred EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 98 ~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.-+|.|+.++..++...+.+++++++||+- ..+|......+++.+.+... +..+|+.|+.++
T Consensus 154 ~~LSgGqkqRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~ 215 (260)
T 2ghi_A 154 MKLSGGERQRIAIARCLLKDPKIVIFDEAT-SSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS 215 (260)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCC-CTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH
Confidence 458999999999998889999999999998 78898887776665555543 667777777654
No 134
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.33 E-value=1.4e-06 Score=74.93 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=27.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG 53 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~ 53 (466)
.|+.+++.||+|+||||++..++.......+..++
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~ 71 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY 71 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 58899999999999999999988876533343333
No 135
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.29 E-value=8.8e-08 Score=98.24 Aligned_cols=142 Identities=21% Similarity=0.163 Sum_probs=83.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHHHHHHH---HHhCCccCCeeeeeEeec----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QELGVRLGEEVGYAIRFE---- 88 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~~~~~~---~~~~~~~~~~~g~~~~~~---- 88 (466)
+.+|+.+.++||+||||||++..+++...+..|...+...+.+... .+..+.++ +..... ..++..+..+.
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~ 442 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPTA 442 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccC-cccHHHHHhcCCCCC
Confidence 5689999999999999999999999888776555444333322211 11111100 000000 00000000000
Q ss_pred ------------------cccCc------cceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 89 ------------------DRTSE------RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 89 ------------------~~~~~------~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
..... ...-.-.|.|+.++..+++..+.+++++++||+- ..+|......+.+.+.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~ 521 (578)
T 4a82_A 443 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEAT-SALDLESESIIQEALD 521 (578)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTT-TTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHH
Confidence 00000 0111237999999999999999999999999998 7888887666555444
Q ss_pred HhhhcCceEEEEecccC
Q 012322 145 NLRASKLKILITSATLD 161 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (466)
...+ +..+++.|+-++
T Consensus 522 ~~~~-~~t~i~itH~l~ 537 (578)
T 4a82_A 522 VLSK-DRTTLIVAHRLS 537 (578)
T ss_dssp HHTT-TSEEEEECSSGG
T ss_pred HHcC-CCEEEEEecCHH
Confidence 4443 666777776554
No 136
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.28 E-value=1.5e-07 Score=96.77 Aligned_cols=142 Identities=24% Similarity=0.263 Sum_probs=85.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH-HHHHHHHHH---HHhCCccCCeeeeeEee-----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---QELGVRLGEEVGYAIRF----- 87 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l-~~~~~~~~~---~~~~~~~~~~~g~~~~~----- 87 (466)
+.+|+.+.++||+||||||++..+++...+..|...+...+.+.. ..+..+.++ +..... ..++..+..+
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~tv~eni~~~~~~~ 444 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLF-NDTVANNIAYARTEE 444 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTTTSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCC-CCCHHHHHhccCCCC
Confidence 568999999999999999999999998776655444333332111 111111100 000000 0000000000
Q ss_pred --cc----------------c------cCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 88 --ED----------------R------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 88 --~~----------------~------~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
+. . ..-.....-+|.|+.++..+++..+.+++++++||+- ..+|......+.+.+
T Consensus 445 ~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l 523 (582)
T 3b60_A 445 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT-SALDTESERAIQAAL 523 (582)
T ss_dssp CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTT-SSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECcc-ccCCHHHHHHHHHHH
Confidence 00 0 0001122348999999999999999999999999998 789988877766666
Q ss_pred HHhhhcCceEEEEecccC
Q 012322 144 VNLRASKLKILITSATLD 161 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~~ 161 (466)
.+... +..+|+.|+.++
T Consensus 524 ~~~~~-~~tvi~itH~~~ 540 (582)
T 3b60_A 524 DELQK-NRTSLVIAHRLS 540 (582)
T ss_dssp HHHHT-TSEEEEECSCGG
T ss_pred HHHhC-CCEEEEEeccHH
Confidence 55544 677888887654
No 137
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.26 E-value=3.3e-07 Score=78.30 Aligned_cols=60 Identities=3% Similarity=-0.026 Sum_probs=37.9
Q ss_pred CHHHHHHHHhhCCCCCCCcEEEecCCCccccCHH----------------HHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 101 TDGVLLREILSNPDLSPYSVIILDEAHERSLNTD----------------ILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 101 T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~----------------~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
+.++.++..++.....++.++++||+- ..++.. ....+.+.+......+..+|+.|+.++
T Consensus 85 s~g~~qrv~iAral~~~p~~lllDEPt-~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 85 ESARKPLIEMAKDYHCFPVAVVFNLPE-KVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCH-HHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCH-HHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 566777777888888999999999986 344443 222222222222223677888888654
No 138
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.24 E-value=5e-07 Score=83.83 Aligned_cols=140 Identities=15% Similarity=0.172 Sum_probs=80.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcE-----EEEe-CchhHHHHHHHHHHH-------------HHhCCcc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGVT-QPRRVAAVSVARRVA-------------QELGVRL 77 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~-----i~~~-~p~~~l~~~~~~~~~-------------~~~~~~~ 77 (466)
+.+|+.+.|+||+||||||++..+++...+..|.. +.++ +........+.+.+. +..+...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~ 140 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEE 140 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHH
Confidence 45789999999999999999999998876544432 2222 210000001111111 0011000
Q ss_pred CCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEe
Q 012322 78 GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (466)
Q Consensus 78 ~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (466)
... ...............-+|.|+.++..++...+.+++++++||+- ..+|......+++.++.....+..+|+.|
T Consensus 141 --~l~-~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~ll~~~~~~~tviivt 216 (290)
T 2bbs_A 141 --DIS-KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF-GYLDVLTEKEIFESCVCKLMANKTRILVT 216 (290)
T ss_dssp --HHH-TSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHCCCCCTTTSEEEEEC
T ss_pred --HHH-hccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc-ccCCHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 000 00000000001123458999999999999999999999999998 78898887776554332222356777777
Q ss_pred ccc
Q 012322 158 ATL 160 (466)
Q Consensus 158 AT~ 160 (466)
+.+
T Consensus 217 Hd~ 219 (290)
T 2bbs_A 217 SKM 219 (290)
T ss_dssp CCH
T ss_pred cCH
Confidence 764
No 139
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.22 E-value=3.3e-06 Score=86.10 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=50.2
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHH
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR 68 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~ 68 (466)
.+...|.+++..+..++.++|.|+.|+||||++..++..... .+.++++..|+..++..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEecCcHHHHHHhHhh
Confidence 456789999999999999999999999999888777665443 356788888988877666543
No 140
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.22 E-value=2.2e-06 Score=87.64 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=49.9
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.+.-+|.|+.++..++...+.+++++++||+- ..+|......+.+.+......+..+|+.|+.++
T Consensus 218 ~~~~LSgGe~Qrv~iAraL~~~p~llllDEPt-s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~ 282 (608)
T 3j16_B 218 DIEKLSGGELQRFAIGMSCVQEADVYMFDEPS-SYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS 282 (608)
T ss_dssp CTTTCCHHHHHHHHHHHHHHSCCSEEEEECTT-TTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH
T ss_pred ChHHCCHHHHHHHHHHHHHHhCCCEEEEECcc-cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 34458999999999988889999999999998 788888777755555555444567777777553
No 141
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.22 E-value=1.5e-06 Score=87.86 Aligned_cols=141 Identities=13% Similarity=0.141 Sum_probs=85.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcE------EEEeCch-----hHHHHHHHHHHHHHhCCcc--CCe-ee
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI------IGVTQPR-----RVAAVSVARRVAQELGVRL--GEE-VG 82 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~------i~~~~p~-----~~l~~~~~~~~~~~~~~~~--~~~-~g 82 (466)
+.+|+.+.|.||+||||||++..+.+...+..|.. +-++... ...+.+..... ..... ... +.
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~---~~~~~~~~~~~~~ 367 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENA---SKDALSTSSWFFE 367 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHH---CSSTTCTTSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHh---hhhccchhHHHHH
Confidence 46799999999999999999999999877665543 2221110 11122221111 10000 000 00
Q ss_pred ee-EeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh-cCceEEEEeccc
Q 012322 83 YA-IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (466)
Q Consensus 83 ~~-~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SAT~ 160 (466)
.. ....-....+..+--+|.|+.++..++.....+++++++||+- ..+|......+++.+.+... .+..+|+.|+.+
T Consensus 368 ~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT-~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 368 EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS-SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 00 0000001122344458999999999999999999999999998 78998887776665555432 256778877765
Q ss_pred C
Q 012322 161 D 161 (466)
Q Consensus 161 ~ 161 (466)
+
T Consensus 447 ~ 447 (538)
T 3ozx_A 447 S 447 (538)
T ss_dssp H
T ss_pred H
Confidence 3
No 142
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.20 E-value=2.2e-07 Score=95.66 Aligned_cols=142 Identities=22% Similarity=0.218 Sum_probs=84.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH-HHHHHHHH---HHhCCccCCeeeeeEee-----
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QELGVRLGEEVGYAIRF----- 87 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~-~~~~~~~~---~~~~~~~~~~~g~~~~~----- 87 (466)
+.+|+.+.++||+||||||++..+++...+..|...+...+.+... .+..+.++ +..... ..++..+..+
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~-~~tv~eni~~~~~~~ 445 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGADDP 445 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCC-SSBHHHHHHTTSSST
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCccc-CCCHHHHHhhcCCCc
Confidence 5689999999999999999999999987766554433333321110 11111000 000000 0000000000
Q ss_pred ----c----------------cccC--ccce----EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 88 ----E----------------DRTS--ERTL----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 88 ----~----------------~~~~--~~~~----i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
+ .... -++. ..-+|.|+.++..+++..+.+++++++||+- ..+|......+.+
T Consensus 446 ~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpt-s~LD~~~~~~i~~ 524 (595)
T 2yl4_A 446 SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEAT-SALDAENEYLVQE 524 (595)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCC-SSCCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc-cCCCHHHHHHHHH
Confidence 0 0000 0111 1448999999999999999999999999998 7899887777666
Q ss_pred HHHHhhhcCceEEEEecccC
Q 012322 142 RLVNLRASKLKILITSATLD 161 (466)
Q Consensus 142 ~i~~~~~~~~~ii~~SAT~~ 161 (466)
.+.+... +..+|+.|+.++
T Consensus 525 ~l~~~~~-~~tvi~itH~~~ 543 (595)
T 2yl4_A 525 ALDRLMD-GRTVLVIAHRLS 543 (595)
T ss_dssp HHHHHHT-TSEEEEECCCHH
T ss_pred HHHHHhc-CCEEEEEecCHH
Confidence 6655544 667777777543
No 143
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.19 E-value=4.2e-06 Score=75.07 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=69.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeE-eecccc---
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI-RFEDRT--- 91 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~--- 91 (466)
.+..|+.+++.||+||||||++..++......++...++..+.. ..+...++. ..+........... ..+...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES--RDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC--HHHHHHHHH-HTTCCCGGGBTTTEEEEECCC---
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC--HHHHHHHHH-HhcchHHHHhhCCEEEEecccccc
Confidence 46678999999999999999999888765544455555443321 223333322 23322111000000 000000
Q ss_pred CccceEEEcCHHHHHHHHhhCCCCCCCc--EEEecCCCcccc--CHHHHHHHHHHHHHhhh-cCceEEEEeccc
Q 012322 92 SERTLIKYLTDGVLLREILSNPDLSPYS--VIILDEAHERSL--NTDILLGLVKRLVNLRA-SKLKILITSATL 160 (466)
Q Consensus 92 ~~~~~i~~~T~g~l~~~~~~~~~l~~~~--~iIiDEah~~~~--~~~~~~~~l~~i~~~~~-~~~~ii~~SAT~ 160 (466)
.......-.+.+.+.+.+.......+++ ++|+||+.. .. +......++..+..... .+..+++.|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~-~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA-LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG-GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH-hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0000000015565554443222223678 999999983 33 44333444444433322 267788877776
No 144
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.18 E-value=1.4e-06 Score=88.11 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=89.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc------EEEEeCch----hHHHHHHHHHH-HHHhCC-----ccCCe
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG------IIGVTQPR----RVAAVSVARRV-AQELGV-----RLGEE 80 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~------~i~~~~p~----~~l~~~~~~~~-~~~~~~-----~~~~~ 80 (466)
+..|+.+.|.||+||||||++..+.+...+..|. ..++.+.. ...+.+..... ...... .....
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 3579999999999999999999999987665443 22222211 11122222211 111100 00001
Q ss_pred eeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh-hcCceEEEEecc
Q 012322 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSAT 159 (466)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~-~~~~~ii~~SAT 159 (466)
++. . ...+..+.-+|.|+.++..++...+.+++++|+||+- ..+|......+++.+.+.. ..+..+|+.|+.
T Consensus 389 ~~l----~--~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt-~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 461 (538)
T 1yqt_A 389 LGI----I--DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS-AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 461 (538)
T ss_dssp TTC----G--GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred cCC----h--hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 110 0 1122344458999999999999899999999999998 7899988777666555443 226678887775
Q ss_pred cChhHHHhhc
Q 012322 160 LDGEKVSKFF 169 (466)
Q Consensus 160 ~~~~~~~~~~ 169 (466)
++ .+..+.
T Consensus 462 ~~--~~~~~~ 469 (538)
T 1yqt_A 462 VL--MIDYVS 469 (538)
T ss_dssp HH--HHHHHC
T ss_pred HH--HHHHhC
Confidence 43 344444
No 145
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.18 E-value=3.7e-06 Score=85.12 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=81.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH---H-HHHHHHHHHHHhC--CccCC----------
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV---A-AVSVARRVAQELG--VRLGE---------- 79 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~---l-~~~~~~~~~~~~~--~~~~~---------- 79 (466)
.+..|+.+.++||+||||||++..+.+...+..|.. ....... . ...+......... ...+.
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 120 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD--NDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPK 120 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT--CCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGG
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc--CcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcch
Confidence 357899999999999999999999999887666551 0000000 0 0000000000000 00000
Q ss_pred ----eeeeeEee-c-------------cccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHH
Q 012322 80 ----EVGYAIRF-E-------------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (466)
Q Consensus 80 ----~~g~~~~~-~-------------~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~ 141 (466)
.+...... + -....+..+--+|.|+.++..++...+.+++++|+||+- ..+|......+++
T Consensus 121 ~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPT-s~LD~~~~~~l~~ 199 (538)
T 1yqt_A 121 AVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPS-SYLDIRQRLNAAR 199 (538)
T ss_dssp GCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHH
T ss_pred hhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHH
Confidence 00000000 0 000112233347999999999998889999999999988 6788877655545
Q ss_pred HHHHhhhcCceEEEEeccc
Q 012322 142 RLVNLRASKLKILITSATL 160 (466)
Q Consensus 142 ~i~~~~~~~~~ii~~SAT~ 160 (466)
.+......+..+|+.|+-+
T Consensus 200 ~L~~l~~~g~tvi~vsHd~ 218 (538)
T 1yqt_A 200 AIRRLSEEGKSVLVVEHDL 218 (538)
T ss_dssp HHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHhcCCEEEEEeCCH
Confidence 4444433367788888754
No 146
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.16 E-value=1.7e-06 Score=83.38 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=46.8
Q ss_pred cCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
+|.|+.++..+++..+.+++++++||+- ..+|......+.+.+.+.. .+..+|+.|+-+
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPt-s~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~ 214 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPS-AHLDPVTYQIIRRTLKQAF-ADCTVILCEARI 214 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHH-HHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH
Confidence 7999999999999999999999999987 6788887777555554443 366777777754
No 147
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.13 E-value=4e-07 Score=101.85 Aligned_cols=143 Identities=18% Similarity=0.207 Sum_probs=86.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHH-H--------------HHHHh--CCccCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVAR-R--------------VAQEL--GVRLGE 79 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~-~--------------~~~~~--~~~~~~ 79 (466)
+..|+.+.|+|+|||||||++..++....+.+|...+-..+.+..-.+..+ + +++.. |.....
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~ 1181 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSS 1181 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCC
Confidence 568999999999999999999999998887776655544443322211111 1 01110 000000
Q ss_pred eeeeeE----------eeccccCccceE------EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 80 EVGYAI----------RFEDRTSERTLI------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 80 ~~g~~~----------~~~~~~~~~~~i------~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
.....+ .+-...+.+.+- .-.|.|+.++..+++..+++.+++|+|||- ..+|.+.-..+.+.+
T Consensus 1182 ~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaT-SaLD~~tE~~Iq~~l 1260 (1321)
T 4f4c_A 1182 VTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT-SALDTESEKVVQEAL 1260 (1321)
T ss_dssp SCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCC-CSTTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCcc-ccCCHHHHHHHHHHH
Confidence 000000 000000011111 127899999999999999999999999998 678877665544555
Q ss_pred HHhhhcCceEEEEecccC
Q 012322 144 VNLRASKLKILITSATLD 161 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~~ 161 (466)
.+..+ +..+|..++-++
T Consensus 1261 ~~~~~-~~TvI~IAHRLs 1277 (1321)
T 4f4c_A 1261 DRARE-GRTCIVIAHRLN 1277 (1321)
T ss_dssp TTTSS-SSEEEEECSSSS
T ss_pred HHHcC-CCEEEEeccCHH
Confidence 44444 778888888664
No 148
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.13 E-value=2.1e-06 Score=87.97 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=85.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcE-----E-EEeCch----hHHHHHHHHHH-HHHhCCccCCeeee-e
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----I-GVTQPR----RVAAVSVARRV-AQELGVRLGEEVGY-A 84 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~-----i-~~~~p~----~~l~~~~~~~~-~~~~~~~~~~~~g~-~ 84 (466)
+..|+.+.|.||+||||||++..+.+...+..|.. + ++-+.. ...+.+..... ....... ..+.. .
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~--~~~~~~l 456 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSN--FYKTELL 456 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCH--HHHHHTH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHH--HHHHHHH
Confidence 45799999999999999999999999876654431 2 222211 11122222111 0000000 00000 0
Q ss_pred EeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh-hcCceEEEEecccC
Q 012322 85 IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATLD 161 (466)
Q Consensus 85 ~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~-~~~~~ii~~SAT~~ 161 (466)
..+.-....+..+.-+|.|+.++..++.....+++++++||+- ..+|......+++.+.... ..+..+|+.|+.++
T Consensus 457 ~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~ 533 (607)
T 3bk7_A 457 KPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS-AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 533 (607)
T ss_dssp HHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 0000001122334458999999999999999999999999998 7889888777665555443 23567888777543
No 149
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.3e-06 Score=87.55 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=82.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc------EEEEeCch----hHHHHHHHHHHHHHhCCccCCe--ee-eeE
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSG------IIGVTQPR----RVAAVSVARRVAQELGVRLGEE--VG-YAI 85 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~------~i~~~~p~----~~l~~~~~~~~~~~~~~~~~~~--~g-~~~ 85 (466)
.|+.+.|.||+||||||++..+.+...+..|. ..++-+.. ...+.+. +........... .. ...
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~---~~~~~~~~~~~~~~~~~~l~ 453 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQL---FFKKIRGQFLNPQFQTDVVK 453 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHH---HHHHCSSTTTSHHHHHHTHH
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHH---HHHHhhcccccHHHHHHHHH
Confidence 45889999999999999999999988766553 12221110 0011121 111110000000 00 000
Q ss_pred eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh-hcCceEEEEecccC
Q 012322 86 RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATLD 161 (466)
Q Consensus 86 ~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~-~~~~~ii~~SAT~~ 161 (466)
...-....+..+.-+|.|+.++..++..+..+++++++||+- ..+|......+++.+.+.. ..+..+|+.|+.++
T Consensus 454 ~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT-~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 454 PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS-AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529 (608)
T ss_dssp HHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT-TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred HcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 000001123344458999999999999999999999999998 7899887666555554432 23677888777653
No 150
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.11 E-value=6.8e-07 Score=99.99 Aligned_cols=137 Identities=20% Similarity=0.178 Sum_probs=83.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHH-H---------------------------
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVAR-R--------------------------- 68 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~-~--------------------------- 68 (466)
+..|+.+.|+||+||||||++..+++...+..|...+-..+.+..-.+..+ .
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~ 520 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGIT 520 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccch
Confidence 568999999999999999999999998877666544433333222111111 0
Q ss_pred ------HHHHhCCcc---CCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHH
Q 012322 69 ------VAQELGVRL---GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL 139 (466)
Q Consensus 69 ------~~~~~~~~~---~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~ 139 (466)
.++..+... ...-|+..... .+=.-+|.|+.+|..+++..+.+.+++|+||+- ..+|......+
T Consensus 521 ~~~v~~a~~~a~l~~~i~~lp~G~~T~vG------e~G~~LSGGQkQRiaiARAl~~~~~IliLDE~t-SaLD~~te~~i 593 (1321)
T 4f4c_A 521 REEMVAACKMANAEKFIKTLPNGYNTLVG------DRGTQLSGGQKQRIAIARALVRNPKILLLDEAT-SALDAESEGIV 593 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHHSTTTTSSEES------SSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCTTTHHHH
T ss_pred HHHHHHHHHHccchhHHHcCCCCCccEec------CCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc-ccCCHHHHHHH
Confidence 011100000 00000000000 011237999999999999999999999999998 67777654444
Q ss_pred HHHHHHhhhcCceEEEEecccC
Q 012322 140 VKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 140 l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.+.+.+..+ +..+|+.|+-+.
T Consensus 594 ~~~l~~~~~-~~T~iiiaHrls 614 (1321)
T 4f4c_A 594 QQALDKAAK-GRTTIIIAHRLS 614 (1321)
T ss_dssp HHHHHHHHT-TSEEEEECSCTT
T ss_pred HHHHHHHhC-CCEEEEEcccHH
Confidence 444444443 777888887653
No 151
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.10 E-value=5.5e-06 Score=84.84 Aligned_cols=141 Identities=18% Similarity=0.173 Sum_probs=83.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh-H-------HHHHHHHHHHHHhCCccCC--------
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-V-------AAVSVARRVAQELGVRLGE-------- 79 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~-~-------l~~~~~~~~~~~~~~~~~~-------- 79 (466)
.+.+|+.+.|+||+||||||++..+.+...++.|.. ..... . ........... .....+.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~---~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~i~~~~q~~~~~ 188 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED---NDSWDNVIRAFRGNELQNYFERLKN-GEIRPVVKPQYVDLL 188 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT---CCCHHHHHHHTTTSTHHHHHHHHHH-TSCCCEEECSCGGGG
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc---ccccchhhheeCCEehhhhhhhhhh-hhcceEEeechhhhc
Confidence 357899999999999999999999999887766651 00000 0 00000000000 0000000
Q ss_pred ------eeeeeEeecc--------------ccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHH
Q 012322 80 ------EVGYAIRFED--------------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL 139 (466)
Q Consensus 80 ------~~g~~~~~~~--------------~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~ 139 (466)
.+........ ....+..+--+|.|+.++..++...+.+++++++||+- ..+|......+
T Consensus 189 ~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPT-s~LD~~~~~~l 267 (607)
T 3bk7_A 189 PKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPS-SYLDIRQRLKV 267 (607)
T ss_dssp GGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTT-TTCCHHHHHHH
T ss_pred hhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHH
Confidence 0000000000 00011223347999999999999999999999999988 78888876665
Q ss_pred HHHHHHhhhcCceEEEEecccC
Q 012322 140 VKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 140 l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
++.+......+..+|+.|+.++
T Consensus 268 ~~~L~~l~~~g~tvIivsHdl~ 289 (607)
T 3bk7_A 268 ARVIRRLANEGKAVLVVEHDLA 289 (607)
T ss_dssp HHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHHHhcCCEEEEEecChH
Confidence 5555444333677888888543
No 152
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.07 E-value=7.9e-06 Score=67.82 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=24.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
.++.+++.||+|+|||+++..+......
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999988886654
No 153
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.07 E-value=4.6e-06 Score=84.25 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=49.7
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.+.-+|.|+.++..++.....+++++|+||+- ..+|......+.+.+.+... +..+|+.|+-++
T Consensus 135 ~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPt-s~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~ 198 (538)
T 3ozx_A 135 DANILSGGGLQRLLVAASLLREADVYIFDQPS-SYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI 198 (538)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH
Confidence 34458999999999999899999999999988 78888876665555544443 677888888663
No 154
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.07 E-value=6.2e-06 Score=82.14 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=46.0
Q ss_pred chHhHHHHHHHHh----cCC-EEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH
Q 012322 6 ILQYEETIVETVE----QNP-VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (466)
Q Consensus 6 i~~~q~~i~~~i~----~~~-~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~ 69 (466)
+.+.|.+++..+. +++ .++|.|+.|||||+++..++......+...++++.|+..++..+.+++
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 4556777777553 234 999999999999988877776554443447888899888776665544
No 155
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.02 E-value=1.7e-05 Score=75.03 Aligned_cols=114 Identities=19% Similarity=0.116 Sum_probs=67.9
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCc-cCCeeeeeEeeccc
Q 012322 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEEVGYAIRFEDR 90 (466)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~ 90 (466)
.+--.+..|+.++|+|||||||||++..++....+..+...+-..+ .. ... ....+++
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~------------~~~~~~~~i~~------- 221 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EI------------VFKHHKNYTQL------- 221 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CC------------CCSSCSSEEEE-------
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--cc------------ccccchhEEEE-------
Confidence 3445678899999999999999999999999887655544333222 10 000 0111111
Q ss_pred cCccceEEEcC-HHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChh
Q 012322 91 TSERTLIKYLT-DGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (466)
Q Consensus 91 ~~~~~~i~~~T-~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~ 163 (466)
.+ .|+-++..+......+++++++||+- . .. ....++.+ ...+..++..++..+..
T Consensus 222 ---------~~ggg~~~r~~la~aL~~~p~ilildE~~--~--~e-~~~~l~~~---~~g~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 222 ---------FFGGNITSADCLKSCLRMRPDRIILGELR--S--SE-AYDFYNVL---CSGHKGTLTTLHAGSSE 278 (330)
T ss_dssp ---------ECBTTBCHHHHHHHHTTSCCSEEEECCCC--S--TH-HHHHHHHH---HTTCCCEEEEEECSSHH
T ss_pred ---------EeCCChhHHHHHHHHhhhCCCEEEEcCCC--h--HH-HHHHHHHH---hcCCCEEEEEEcccHHH
Confidence 11 44455555555667889999999986 2 12 22233333 22123477777877643
No 156
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.02 E-value=3.4e-05 Score=66.03 Aligned_cols=72 Identities=11% Similarity=-0.007 Sum_probs=44.5
Q ss_pred eEEEcCHHHHHHHHhhCC-----CCCCCcEEEecCCCc-cccCHHHHHHHHHHHHHhhhcCceEEEEec-ccChhHHHhh
Q 012322 96 LIKYLTDGVLLREILSNP-----DLSPYSVIILDEAHE-RSLNTDILLGLVKRLVNLRASKLKILITSA-TLDGEKVSKF 168 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~-----~l~~~~~iIiDEah~-~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA-T~~~~~~~~~ 168 (466)
...-.+.|+.++..+... ...+++++++||++- ..++..+...+ ..++.. .+..+++.|+ |.+...+..+
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l-~~~l~~--~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV-RQIMHD--PNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH-HHHHTC--TTSEEEEECCSSCCSHHHHHH
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH-HHHHhc--CCCeEEEEEccCCCchHHHHH
Confidence 345577888877776654 677899999999531 45666665553 333333 2445777776 5554555555
Q ss_pred cC
Q 012322 169 FS 170 (466)
Q Consensus 169 ~~ 170 (466)
..
T Consensus 150 ~~ 151 (178)
T 1ye8_A 150 RR 151 (178)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 157
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.02 E-value=2.4e-05 Score=73.10 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCC-cEEEE
Q 012322 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS-GIIGV 54 (466)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~-~~i~~ 54 (466)
+.+.-.+..|+.++|.||+|+||||++..++.......| ...++
T Consensus 26 d~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 26 NDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp HHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred HHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 445556788999999999999999999999888766545 34344
No 158
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.01 E-value=9.2e-06 Score=73.72 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHH
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~ 42 (466)
.+.+|+.++|.||+||||||++..++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 567899999999999999999998883
No 159
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.94 E-value=1.2e-06 Score=97.66 Aligned_cols=141 Identities=20% Similarity=0.181 Sum_probs=81.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-HHHHHH---HHhCCccCCeeeeeEe------
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARRVA---QELGVRLGEEVGYAIR------ 86 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-~~~~~~---~~~~~~~~~~~g~~~~------ 86 (466)
+..|+.+.|+|||||||||++..+++...+..|...+...+.+....+ ..+.++ +..... ..++..+..
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~g~~~~ 491 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF-ATTIAENIRYGREDV 491 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCC-SSCHHHHHHHHCSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccC-CccHHHHHhcCCCCC
Confidence 568999999999999999999999988877655544333322211110 000000 000000 000000000
Q ss_pred --------------------e--ccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHH
Q 012322 87 --------------------F--EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (466)
Q Consensus 87 --------------------~--~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~ 144 (466)
. .........-.-++.|+.++..+++..+.+.+++|+||+- ..+|......+.+.+.
T Consensus 492 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpt-s~LD~~~~~~i~~~l~ 570 (1284)
T 3g5u_A 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT-SALDTESEAVVQAALD 570 (1284)
T ss_dssp CHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTT-CSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHHHHH
Confidence 0 0000001122347999999999999999999999999998 6788876554434333
Q ss_pred HhhhcCceEEEEeccc
Q 012322 145 NLRASKLKILITSATL 160 (466)
Q Consensus 145 ~~~~~~~~ii~~SAT~ 160 (466)
... .+..+|+.|+-+
T Consensus 571 ~~~-~~~t~i~itH~l 585 (1284)
T 3g5u_A 571 KAR-EGRTTIVIAHRL 585 (1284)
T ss_dssp HHH-TTSEEEEECSCH
T ss_pred HHc-CCCEEEEEecCH
Confidence 333 367788877754
No 160
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.87 E-value=7.4e-05 Score=72.85 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEE-eCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceEE
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~-~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (466)
+.+++++|++|+||||++..++......++...++ ..+.+..+.++...+++..+..+... ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~----------~~~----- 161 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGE----------PNN----- 161 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECC----------TTC-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeec----------ccc-----
Confidence 35788999999999988887776665544444343 34456666666665655544321100 000
Q ss_pred EcCHHHHHHHHhhCCCCCCCcEEEecCCCccc--cCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERS--LNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 99 ~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~--~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
..|..+....+......+++++|||++.... .+..+... +..+.....++..+++++|+..
T Consensus 162 -~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~e-l~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 162 -QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEE-MKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp -SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHH-HHHHHHHHCCSEEEEEEEGGGG
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHH-HHHHHHhhCCcceEEEEeCccc
Confidence 1233343333333344689999999998333 45555444 5555555444677788888863
No 161
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.86 E-value=6e-05 Score=73.96 Aligned_cols=59 Identities=15% Similarity=0.286 Sum_probs=46.6
Q ss_pred cCHHHHHHHHhhCCCCCCC--cEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 100 LTDGVLLREILSNPDLSPY--SVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~l~~~--~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
+|.|+.++..++...+.+. .++|+||+. ..+|......+.+.+.... .+.++|+.|+.+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt-~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~ 356 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVD-AGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA 356 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTT-TTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH
Confidence 6999998887666655666 999999998 7899988877666666555 378999988864
No 162
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.85 E-value=9.9e-05 Score=65.31 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=63.9
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceE
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (466)
..|...++.||+|+||||.+...+...... +.+++++.|..... . .. .+....|.. ...+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kVli~~~~~d~r-~-~~--------~i~srlG~~---------~~~~ 69 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPKIDTR-S-IR--------NIQSRTGTS---------LPSV 69 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCCGG-G-CS--------SCCCCCCCS---------SCCE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEEeccCch-H-HH--------HHHHhcCCC---------cccc
Confidence 456788999999999999888887766543 44566666643210 0 00 111111100 0112
Q ss_pred EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEec
Q 012322 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (466)
Q Consensus 98 ~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (466)
.+.+...+...+.....-.++++|||||++ .++.+ ....+..+.. .+..+++...
T Consensus 70 ~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ--~l~~~-~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 70 EVESAPEILNYIMSNSFNDETKVIGIDEVQ--FFDDR-ICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp EESSTHHHHHHHHSTTSCTTCCEEEECSGG--GSCTH-HHHHHHHHHH---TTCEEEEECC
T ss_pred ccCCHHHHHHHHHHHhhCCCCCEEEEecCc--cCcHH-HHHHHHHHHh---CCCeEEEEec
Confidence 234455566555544334568999999998 34444 3333444433 2566666554
No 163
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.85 E-value=2.2e-05 Score=70.20 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=26.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
.+..|+.+.|.||+||||||++..++.....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4568899999999999999999999875543
No 164
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.84 E-value=5.3e-05 Score=72.29 Aligned_cols=37 Identities=41% Similarity=0.382 Sum_probs=29.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG 53 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~ 53 (466)
...++.++|+|||||||||++..++.......+..++
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~ 156 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHIL 156 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEE
Confidence 3567789999999999999999998877665444444
No 165
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.82 E-value=2.4e-05 Score=81.63 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=47.0
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCc--EEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 97 IKYLTDGVLLREILSNPDLSPYS--VIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~--~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
+--+|.|+.++..+++....+++ ++++||+- ..+|......+++.+......+..+|+.|+.++
T Consensus 200 ~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPt-sgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 200 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPS-IGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTT-TTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 34489999999999888888877 99999987 677776655554444444334677888888654
No 166
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.82 E-value=1.5e-05 Score=89.09 Aligned_cols=143 Identities=18% Similarity=0.235 Sum_probs=83.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHH-HHHH--------------HHHHhCCccC-Ce
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARR--------------VAQELGVRLG-EE 80 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~-~~~~--------------~~~~~~~~~~-~~ 80 (466)
+..|+.+.|+|||||||||++..+.+...+..|...+...+.+....+ ..+. +.+....... ..
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~ 1135 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRV 1135 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCC
Confidence 567999999999999999999999987766554433333322111000 0000 0000000000 00
Q ss_pred eeee-E----------eeccccCc------cceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHH
Q 012322 81 VGYA-I----------RFEDRTSE------RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (466)
Q Consensus 81 ~g~~-~----------~~~~~~~~------~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i 143 (466)
.... . .+-..... ...-.-+|.|+.++..+++..+.+++++|+||+- ..+|......+.+.+
T Consensus 1136 ~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpT-s~lD~~~~~~i~~~l 1214 (1284)
T 3g5u_A 1136 VSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEAT-SALDTESEKVVQEAL 1214 (1284)
T ss_dssp CCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCS-SSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHH
Confidence 0000 0 00000000 0112247999999999999889999999999998 789988766655555
Q ss_pred HHhhhcCceEEEEecccC
Q 012322 144 VNLRASKLKILITSATLD 161 (466)
Q Consensus 144 ~~~~~~~~~ii~~SAT~~ 161 (466)
.... .+..+|+.|+-++
T Consensus 1215 ~~~~-~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1215 DKAR-EGRTCIVIAHRLS 1231 (1284)
T ss_dssp HHHS-SSSCEEEECSCTT
T ss_pred HHhC-CCCEEEEEecCHH
Confidence 4433 3778888888775
No 167
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.80 E-value=0.00016 Score=70.07 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=60.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeC-chhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceEEEc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYL 100 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~-p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ 100 (466)
.++|.||+|+|||+++..+........+..++.+. .......+....+...++..... .+ .
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~-----------------~ 107 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPR-RG-----------------L 107 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS-SC-----------------C
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCC-CC-----------------C
Confidence 89999999999999999888776543223333332 22222233444444444322100 00 1
Q ss_pred CHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh----cCceEEEEeccc
Q 012322 101 TDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA----SKLKILITSATL 160 (466)
Q Consensus 101 T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~----~~~~ii~~SAT~ 160 (466)
+.+.+...+.... ...+..+||+||+|. ++.+.+..++ .+....+ .+..+|+.|...
T Consensus 108 ~~~~~~~~l~~~l~~~~~~~vlilDE~~~--l~~~~~~~L~-~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 108 SRDEFLALLVEHLRERDLYMFLVLDDAFN--LAPDILSTFI-RLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEETGGG--SCHHHHHHHH-HHTTCHHHHSSCCEEEEEEESST
T ss_pred CHHHHHHHHHHHHhhcCCeEEEEEECccc--cchHHHHHHH-HHHHhCCCCCcCCEEEEEEECCc
Confidence 2222222211100 123467999999993 3555555433 3332222 256677666554
No 168
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.76 E-value=5.3e-05 Score=70.02 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=25.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.+..|+.++|.||+||||||++..++....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467889999999999999999988886443
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.75 E-value=5.9e-05 Score=66.84 Aligned_cols=27 Identities=26% Similarity=0.150 Sum_probs=24.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHH
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~ 42 (466)
.+..|+.+++.||+|+||||++..++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 466889999999999999999998887
No 170
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.72 E-value=0.00021 Score=66.66 Aligned_cols=125 Identities=16% Similarity=0.238 Sum_probs=66.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeC-chhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceE
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~-p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (466)
.++.++++||+|+||||++..++......++...++.. +.+..+.++.+.+.+..+..+ +. . . ..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~---~~-----~-~-s~---- 168 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV---IS-----H-S-EG---- 168 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE---EC-----C-S-TT----
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE---Ee-----c-C-Cc----
Confidence 34578999999999999988888776655454444443 445555444444545444332 00 0 0 00
Q ss_pred EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhh----h--cCceEEEEeccc
Q 012322 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR----A--SKLKILITSATL 160 (466)
Q Consensus 98 ~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~----~--~~~~ii~~SAT~ 160 (466)
..+..+....+......+++++|+||+- +....+.+...++.+.... + ....++.+.|+.
T Consensus 169 --~~~~~v~~~al~~a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 169 --ADPAAVAFDAVAHALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 1122221111111234578999999997 4433444444455544332 1 133466667774
No 171
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.71 E-value=7.4e-05 Score=79.77 Aligned_cols=134 Identities=17% Similarity=0.176 Sum_probs=80.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcC----cCCCcEEEEeCch------hHHHHHHH-----------HHHHHHhCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG----YTKSGIIGVTQPR------RVAAVSVA-----------RRVAQELGV 75 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~----~~~~~~i~~~~p~------~~l~~~~~-----------~~~~~~~~~ 75 (466)
+..|+.+.|+||+||||||++..+..-.. .....++.++... ...+.+.. ..+.+.+++
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 56899999999999999999999984111 0011123332210 00111111 111111111
Q ss_pred ccCCeeeeeEeeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEE
Q 012322 76 RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (466)
Q Consensus 76 ~~~~~~g~~~~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (466)
. . ...+..+--+|.|+.++..+....+.+++++++||+- ..+|......+++.+.. .+..+|+
T Consensus 538 ~-----------~--~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT-s~LD~~~~~~l~~~L~~---~g~tvIi 600 (986)
T 2iw3_A 538 T-----------D--EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPT-NHLDTVNVAWLVNYLNT---CGITSIT 600 (986)
T ss_dssp C-----------H--HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT-TTCCHHHHHHHHHHHHH---SCSEEEE
T ss_pred C-----------h--hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHh---CCCEEEE
Confidence 0 0 0011223347999999999998889999999999998 78888877775555544 2677888
Q ss_pred EecccChhHHHhhc
Q 012322 156 TSATLDGEKVSKFF 169 (466)
Q Consensus 156 ~SAT~~~~~~~~~~ 169 (466)
.|+.+ +.+..+.
T Consensus 601 vSHdl--~~l~~~a 612 (986)
T 2iw3_A 601 ISHDS--VFLDNVC 612 (986)
T ss_dssp ECSCH--HHHHHHC
T ss_pred EECCH--HHHHHhC
Confidence 77754 3344443
No 172
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.68 E-value=0.00028 Score=65.57 Aligned_cols=128 Identities=23% Similarity=0.263 Sum_probs=69.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc-EEEEe-CchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccce
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-IIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~-~i~~~-~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (466)
.+++++++||+|+||||++..+........|. ..++. .+.+..+.++...+++..+..... .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~--~-------------- 167 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEV--C-------------- 167 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCB--C--------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEe--c--------------
Confidence 46789999999999999998888776643443 33333 344555554444444333322100 0
Q ss_pred EEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccChhHHHhhc
Q 012322 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (466)
.++..+...+. .+.+++++|+|.+-....+...... +..+......+..++++.||.....+.++.
T Consensus 168 ---~~~~~l~~al~---~~~~~dlvIiDT~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~at~~~~~~~~~~ 233 (296)
T 2px0_A 168 ---YTKEEFQQAKE---LFSEYDHVFVDTAGRNFKDPQYIDE-LKETIPFESSIQSFLVLSATAKYEDMKHIV 233 (296)
T ss_dssp ---SSHHHHHHHHH---HGGGSSEEEEECCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEETTBCHHHHHHHT
T ss_pred ---CCHHHHHHHHH---HhcCCCEEEEeCCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEECCCCHHHHHHHH
Confidence 12333332222 1267899999987632233333333 333332111234577787887655555443
No 173
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.68 E-value=0.00016 Score=63.06 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=25.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEE
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~ 54 (466)
..+++.||+|+|||+++..+.......+...+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 7899999999999999888877665433333333
No 174
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.67 E-value=0.00029 Score=68.72 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=71.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEE-eCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceEE
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~-~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (466)
...++++|++|+||||++..++......+....++ ..+.+..+.++.+.+++..+..+... . ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~---------~-~~----- 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGN---------P-QE----- 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECC---------T-TC-----
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEec---------C-CC-----
Confidence 35789999999999988877776554433333333 34667777666666655554332100 0 00
Q ss_pred EcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 99 ~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
..|..+.+..+......+++++|||.+-....+...... ++.+......+..++.+.||..
T Consensus 165 -~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~e-l~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 165 -KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEE-MKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHH-HHHHHHHHCCSEEEEEEEGGGG
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHH-HHHHHHhhcCceEEEEEeCCCc
Confidence 123333222222212235899999998733334444333 5666555544677888888874
No 175
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.65 E-value=0.00015 Score=68.27 Aligned_cols=127 Identities=16% Similarity=0.267 Sum_probs=70.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc-hhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceE
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-RRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p-~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (466)
+++.+.++||+||||||++..+.......++...+...+ .+..+.++...+++..+..+. .... .
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v--------~q~~-~----- 193 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVI--------KHSY-G----- 193 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEE--------CCCT-T-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEE--------eccc-c-----
Confidence 477899999999999999999998877776766666555 344555555555555553211 0000 0
Q ss_pred EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccCh
Q 012322 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (466)
Q Consensus 98 ~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~ 162 (466)
..|..............+.+++++|.+.....+...... +..+.+....+..++.+.++...
T Consensus 194 --~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~e-L~~i~ral~~de~llvLDa~t~~ 255 (328)
T 3e70_C 194 --ADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDE-MKKIARVTKPNLVIFVGDALAGN 255 (328)
T ss_dssp --CCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHH-HHHHHHHHCCSEEEEEEEGGGTT
T ss_pred --CCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHH-HHHHHHHhcCCCCEEEEecHHHH
Confidence 011111100000001124678899998732333333333 44444433346677788877643
No 176
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00065 Score=63.42 Aligned_cols=122 Identities=13% Similarity=0.075 Sum_probs=63.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCC------CcEEEEe-CchhHHHHHHHHHHHHHh-CCccCCeeeeeEeeccc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTK------SGIIGVT-QPRRVAAVSVARRVAQEL-GVRLGEEVGYAIRFEDR 90 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~------~~~i~~~-~p~~~l~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~ 90 (466)
.+.+++|.||+|+|||+++..++....... .-..+.+ ........+.+..+.+.+ +.. ..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~----~~-------- 111 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKEN----LC-------- 111 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC----CC--------
Confidence 456899999999999988888877653211 1122222 222122233444444433 211 00
Q ss_pred cCccceEEEcCHHHHHHHHhhCC-CCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 91 TSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 91 ~~~~~~i~~~T~g~l~~~~~~~~-~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.. .+...+.+.+.... .-...-++++||+| +....+.+..+++. ......+.-+|+.++|++
T Consensus 112 -~~------~~~~~L~~~f~~~~~~~~~~~ii~lDE~d-~l~~q~~L~~l~~~-~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 112 -GD------ISLEALNFYITNVPKAKKRKTLILIQNPE-NLLSEKILQYFEKW-ISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp -CC------CCHHHHHHHHHHSCGGGSCEEEEEEECCS-SSCCTHHHHHHHHH-HHCSSCCEEEEEECCSSC
T ss_pred -ch------HHHHHHHHHHHHhhhccCCceEEEEecHH-HhhcchHHHHHHhc-ccccCCcEEEEEEecCcc
Confidence 00 12233444443221 22456799999999 44466666554442 222222567778888874
No 177
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.59 E-value=0.00047 Score=56.69 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=28.3
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
...+.+......+.++++.||+|+|||+++..+.....
T Consensus 12 ~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 12 QYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp HHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 33444444556788999999999999999987766543
No 178
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.59 E-value=5.9e-05 Score=72.00 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=25.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..|+.+.|.||+||||||++..++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999998876
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.56 E-value=0.00018 Score=64.68 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=25.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+..|+.+++.||+|+||||++..++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999988853
No 180
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.52 E-value=0.00021 Score=61.48 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=28.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~ 58 (466)
.|...++.||.|+||||.+..++..... .+.+++++.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~-~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL-GKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeec
Confidence 4678899999999999988766665433 24567777675
No 181
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.51 E-value=0.00061 Score=63.26 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=66.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeC-chhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceE
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~-p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (466)
.++.+.++|++|+||||++..+.......++...++-. +.+..+..+...+.+..+..+ .. .. . .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~---~~----~~-~-~----- 162 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE----VM-D-G----- 162 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE----CC-T-T-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE---EE----cC-C-C-----
Confidence 35678889999999999988888776655555444443 344444333333333333221 00 00 0 0
Q ss_pred EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 98 ~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
..|..+++..+......+++++|+||+-....+...... +..+.........++.+.|+..
T Consensus 163 --~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~-l~~~~~~~~~~~~~lv~~~~~~ 223 (295)
T 1ls1_A 163 --ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE-LARLKEVLGPDEVLLVLDAMTG 223 (295)
T ss_dssp --CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHH-HHHHHHHHCCSEEEEEEEGGGT
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHH-HHHHhhhcCCCEEEEEEeCCCc
Confidence 134444443333222357899999998424455444444 3333333222444556667643
No 182
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.50 E-value=8.2e-05 Score=79.41 Aligned_cols=59 Identities=24% Similarity=0.289 Sum_probs=45.6
Q ss_pred EEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 98 ~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
--+|.|+.++..+....+.+++++|+||+- ..+|......+++.+.. . +..+|+.|+.+
T Consensus 900 ~~LSGGQkQRVaLArAL~~~P~LLLLDEPT-~gLD~~s~~~L~~~L~~-~--g~tVIiISHD~ 958 (986)
T 2iw3_A 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPT-NYLDRDSLGALSKALKE-F--EGGVIIITHSA 958 (986)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEECGG-GTCCHHHHHHHHHHHHS-C--SSEEEEECSCH
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEECCc-cCCCHHHHHHHHHHHHH-h--CCEEEEEECCH
Confidence 347899999999888889999999999998 78998887775555533 2 34677777643
No 183
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.47 E-value=0.00088 Score=59.76 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=26.9
Q ss_pred HHHHHHHhcCC---EEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 11 ETIVETVEQNP---VVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 11 ~~i~~~i~~~~---~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+.+...+..++ .+++.||+|+|||+++..+.....
T Consensus 33 ~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 33 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44555666665 789999999999999988876553
No 184
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.47 E-value=0.00087 Score=66.04 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=30.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p 57 (466)
.|+.+.++|++||||||++..+.+.....++...+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 467899999999999999999988776665655554343
No 185
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.47 E-value=0.00056 Score=56.08 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=25.8
Q ss_pred HhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHH
Q 012322 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~ 42 (466)
..++.+......+..+++.||+|+|||+++..+..
T Consensus 15 ~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 15 EMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred HHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 33444445556778899999999999988776644
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.46 E-value=0.00091 Score=63.08 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
+..+++.||+|+|||+++..+......
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 357999999999999999888876543
No 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.45 E-value=0.00087 Score=64.00 Aligned_cols=44 Identities=16% Similarity=0.422 Sum_probs=28.8
Q ss_pred CCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 115 LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 115 l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
..+.+++|+||+| . ++.+....+++.+.. .+.+..+|+.|..++
T Consensus 132 ~~~~~vlilDE~~-~-L~~~~~~~L~~~le~-~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEAN-S-LTKDAQAALRRTMEK-YSKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTT-S-SCHHHHHHHHHHHHH-STTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCcc-c-cCHHHHHHHHHHHHh-hcCCCEEEEEeCCHH
Confidence 4578899999999 3 777766665544443 334667777776553
No 188
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.45 E-value=0.00072 Score=60.44 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=23.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
.+..+++.||+|+|||+++..+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999888765543
No 189
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.43 E-value=0.00044 Score=66.77 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+..+++.||+|+|||+++..+....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999998887655
No 190
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.43 E-value=0.00022 Score=70.77 Aligned_cols=43 Identities=9% Similarity=0.217 Sum_probs=31.4
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEE
Q 012322 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (466)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~ 54 (466)
+++-.+..|+.++|.|++|+||||++..++.......+..+++
T Consensus 195 ~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~ 237 (454)
T 2r6a_A 195 RMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAI 237 (454)
T ss_dssp HHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred hhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 3444567889999999999999999988887665433433333
No 191
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.41 E-value=0.00032 Score=70.97 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=75.1
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCC--eeeeeEeeccccCc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE--EVGYAIRFEDRTSE 93 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~ 93 (466)
.+..|+.++|.||+||||||++.+++...... +.+++++.+... ..++..+. ..++..... ..|. ....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~-~~~l~~~~-~~~g~~~~~~~~~g~-~~~~----- 347 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEES-RAQLLRNA-YSWGMDFEEMERQNL-LKIV----- 347 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSC-HHHHHHHH-HTTSCCHHHHHHTTS-EEEC-----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCC-HHHHHHHH-HHcCCCHHHHHhCCC-EEEE-----
Confidence 46788999999999999999999998876654 433333222111 12333222 112221100 0000 0000
Q ss_pred cceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHH-----HHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTD-----ILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 94 ~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~-----~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
.....-++.|..++.+.......+++++|+| .- ..++.. ....+.+.+......+..+++.|+..
T Consensus 348 ~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~-~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 348 CAYPESAGLEDHLQIIKSEINDFKPARIAID-SL-SALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CH-HHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred EeccccCCHHHHHHHHHHHHHhhCCCEEEEc-Ch-HHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 0011125889999988877777899999999 65 445444 33332222222223467888888876
No 192
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.41 E-value=0.0026 Score=55.75 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCC--EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 10 EETIVETVEQNP--VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 10 q~~i~~~i~~~~--~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+.+.+.+..++ .+++.||+|+|||+++..+....
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344555555553 58999999999999888776643
No 193
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.38 E-value=8.8e-05 Score=65.14 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=37.2
Q ss_pred CchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc
Q 012322 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (466)
Q Consensus 5 pi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~ 50 (466)
|-.--+..+++.+.+|+.+.|.||+||||||++..+++. .++.|.
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~ 51 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQ 51 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTS
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCe
Confidence 334446678999999999999999999999999999988 655444
No 194
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.38 E-value=0.00077 Score=58.09 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=30.5
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~ 58 (466)
..|...++.||.||||||.+...+..... .+.++++..|.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~-~g~kV~v~k~~ 45 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKI-AKQKIQVFKPE 45 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEec
Confidence 45678899999999999888777776643 35577777775
No 195
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.36 E-value=0.0031 Score=60.49 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=53.2
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHh-cCcCCCcEEEEeCchhHHHHHHHHHHHHHh
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQEL 73 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~-~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 73 (466)
+.+..+|..++..+...+.+++..+-+.|||+++..++.. ....++..++++.|++..+..+.+.+....
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 4678999999998876788899999999999665544433 333456689999999988888777665443
No 196
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.32 E-value=0.00032 Score=67.66 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+..++|.||+|+|||+++..+.....
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999988877653
No 197
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.26 E-value=0.00063 Score=63.65 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+..+++.||+|+|||+++..+.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999998888777655
No 198
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.22 E-value=0.00092 Score=71.54 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=30.6
Q ss_pred CCCCcEEEecCCCccccCHHHHHHHHHHHHHhhh--cCceEEEEecccC
Q 012322 115 LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA--SKLKILITSATLD 161 (466)
Q Consensus 115 l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~--~~~~ii~~SAT~~ 161 (466)
..+.+++++||+- ++.++.....+...++.... .+..+++.|+-..
T Consensus 739 a~~~sLlLLDEp~-~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e 786 (934)
T 3thx_A 739 ATKDSLIIIDELG-RGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE 786 (934)
T ss_dssp CCTTCEEEEESCS-CSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG
T ss_pred ccCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH
Confidence 5678999999998 78887665554444444332 2567777666543
No 199
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.22 E-value=0.00048 Score=71.16 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=52.7
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHH
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 71 (466)
+...|.+++..+..+..++|.||+|+|||+.+..++.......+.+++++.|+..++.++.+++.+
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 567888888888888899999999999997666555544332466899999999999999888754
No 200
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.20 E-value=0.00049 Score=71.76 Aligned_cols=63 Identities=25% Similarity=0.266 Sum_probs=47.1
Q ss_pred EEcCHHHHHHHHhhCCCCCCC---cEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 98 KYLTDGVLLREILSNPDLSPY---SVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 98 ~~~T~g~l~~~~~~~~~l~~~---~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.-+|.|+.++..++...+.++ +++++||+- ..+|......+++.+.+....+..+|+.|+.++
T Consensus 542 ~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt-~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 542 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT-TGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 607 (670)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 348999999999888765554 699999998 788888777666655555444677888877654
No 201
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.20 E-value=0.00052 Score=71.30 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=48.1
Q ss_pred chHhHHHHHHHH-hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHH
Q 012322 6 ILQYEETIVETV-EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (466)
Q Consensus 6 i~~~q~~i~~~i-~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 71 (466)
+.+.|.+++... ......+|.||+|||||+.+..++..... .+.+++++.|+..++.++.+++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~-~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK-QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEcCchHHHHHHHHHHHh
Confidence 566777666654 45678999999999999544444443322 356899999999999999998854
No 202
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.19 E-value=0.00016 Score=65.88 Aligned_cols=41 Identities=32% Similarity=0.486 Sum_probs=33.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcC-CCcEEEEeCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQP 57 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~-~~~~i~~~~p 57 (466)
+..|+.++|+|||||||||++..++...... .+...+.-.|
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 6789999999999999999999999877665 5555555544
No 203
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.18 E-value=0.0022 Score=68.46 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=34.6
Q ss_pred CCCCcEEEecCCCccccCHHHHHHHHHHHHHhh-h-cCceEEEEecccChhHHHh
Q 012322 115 LSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-A-SKLKILITSATLDGEKVSK 167 (466)
Q Consensus 115 l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~-~-~~~~ii~~SAT~~~~~~~~ 167 (466)
..+.+++++||+- ++++......+...++... . .+..+++.|+-+.-..+.+
T Consensus 750 a~~p~LlLLDEP~-~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~ 803 (918)
T 3thx_B 750 ATSQSLVILDELG-RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEK 803 (918)
T ss_dssp CCTTCEEEEESTT-TTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHH
T ss_pred ccCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHh
Confidence 5788999999998 8888876666554554432 1 3677777777654333443
No 204
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.17 E-value=3.5e-05 Score=76.18 Aligned_cols=143 Identities=13% Similarity=0.067 Sum_probs=77.8
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCC-c-EEEEeCchhHHHHHHHHHHH--HHh-CCccCCe-eeeeE-
Q 012322 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS-G-IIGVTQPRRVAAVSVARRVA--QEL-GVRLGEE-VGYAI- 85 (466)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~-~-~i~~~~p~~~l~~~~~~~~~--~~~-~~~~~~~-~g~~~- 85 (466)
+--.+..|+.+.|+||+||||||++..+++.....+| . ..+...+.+... -+.+... ... ...+... .+...
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~-~vpq~~~l~~~~~~~tv~eni~~~~~~ 209 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIF-TVPGCISATPISDILDAQLPTWGQSLT 209 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSS-SCSSCCEEEECCSCCCTTCTTCSCBCB
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCee-eeccchhhcccccccchhhhhcccccc
Confidence 3445678999999999999999999999998766556 4 443332211000 0000000 000 0000000 00000
Q ss_pred e---ecccc---------CccceEEEcCHHHHHHHHhhCC--CCCCCcE----EEecC-CCccccCHHHHHHHHHHHHHh
Q 012322 86 R---FEDRT---------SERTLIKYLTDGVLLREILSNP--DLSPYSV----IILDE-AHERSLNTDILLGLVKRLVNL 146 (466)
Q Consensus 86 ~---~~~~~---------~~~~~i~~~T~g~l~~~~~~~~--~l~~~~~----iIiDE-ah~~~~~~~~~~~~l~~i~~~ 146 (466)
. ..... ....+..-++.|+.++..+... +..+.++ +++|| .- ..+|.. ...+..+++.
T Consensus 210 ~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPt-s~LD~~--~~~l~~l~~~ 286 (460)
T 2npi_A 210 SGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSI-SQLDEN--LAELHHIIEK 286 (460)
T ss_dssp SSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCG-GGSCSS--CHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcc-cccChh--HHHHHHHHHH
Confidence 0 00000 0001122356778888887777 7888999 99999 54 455555 4445555554
Q ss_pred hhcCceEEEEecccC
Q 012322 147 RASKLKILITSATLD 161 (466)
Q Consensus 147 ~~~~~~ii~~SAT~~ 161 (466)
. +..++++++...
T Consensus 287 ~--~~tviiVth~~~ 299 (460)
T 2npi_A 287 L--NVNIMLVLCSET 299 (460)
T ss_dssp T--TCCEEEEECCSS
T ss_pred h--CCCEEEEEccCc
Confidence 4 445888888766
No 205
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.17 E-value=0.0062 Score=62.39 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=54.2
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHH-hcCcCCCcEEEEeCchhHHHHHHHHHHHHHhC
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILH-RHGYTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~-~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 74 (466)
+.+..+|..++..+...+..++.++-|+|||+++..++. .....++..++++.|++..+.++...+.....
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 457899999999886678899999999999966543333 33333456899999999999888877766554
No 206
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.17 E-value=0.00067 Score=65.50 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+++.||+|+|||+++..+....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999988887654
No 207
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.17 E-value=0.001 Score=62.60 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=43.8
Q ss_pred EEcCHHHHHHHHhhCCC----CCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 98 KYLTDGVLLREILSNPD----LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 98 ~~~T~g~l~~~~~~~~~----l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
..+|.|+.++..+.... +.+..++++||+. ..+|......++..+.... .+.++|+.|+..
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~-~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~ 282 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVD-SPLDDYNAERFKRLLKENS-KHTQFIVITHNK 282 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCC-SSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH
Confidence 35788988887765543 3678999999998 7888887666555554443 367888888764
No 208
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.15 E-value=0.004 Score=61.32 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+++.||+|+|||+++..+....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999998887755
No 209
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.14 E-value=0.002 Score=60.98 Aligned_cols=39 Identities=5% Similarity=0.068 Sum_probs=27.7
Q ss_pred hHhHHHHH----HHHhcCC---EEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 7 LQYEETIV----ETVEQNP---VVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 7 ~~~q~~i~----~~i~~~~---~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+++|++++ ..+.+|+ .+++.||.|+|||+++..+.....
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 45555544 4445555 489999999999998888776553
No 210
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.10 E-value=0.0006 Score=66.41 Aligned_cols=40 Identities=35% Similarity=0.522 Sum_probs=32.0
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p 57 (466)
..++.++|+|||||||||++..++.......+..++.-.|
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 4567899999999999999999999887665655555554
No 211
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.08 E-value=0.0027 Score=57.87 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=26.2
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
+......+..+++.||+|+|||+++..+......
T Consensus 22 ~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 22 VSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp HHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred HHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 3334456788999999999999999888776543
No 212
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.06 E-value=0.0011 Score=64.17 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
+..|+.+.|.||+||||||++..++..
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 457899999999999999999876543
No 213
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.05 E-value=0.00032 Score=70.89 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=30.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHH--HHhcCcCCCcEEEEeCc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQI--LHRHGYTKSGIIGVTQP 57 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~--~~~~~~~~~~~i~~~~p 57 (466)
.+..|+.++|.||+||||||++..+ .+...+..+...+...+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 5668999999999999999999984 45544444444444444
No 214
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=97.03 E-value=0.0025 Score=65.17 Aligned_cols=111 Identities=20% Similarity=0.323 Sum_probs=74.4
Q ss_pred HhHHHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeE
Q 012322 8 QYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI 85 (466)
Q Consensus 8 ~~q~~i~~~i~~--~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 85 (466)
..|.++++.+.. ....+++|+-|.|||+.+-.++..... .++++.|+...+..+.+...+
T Consensus 178 ~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~----~~~vtAP~~~a~~~l~~~~~~-------------- 239 (671)
T 2zpa_A 178 PEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAG----RAIVTAPAKASTDVLAQFAGE-------------- 239 (671)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSS----CEEEECSSCCSCHHHHHHHGG--------------
T ss_pred HHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHh----CcEEECCCHHHHHHHHHHhhC--------------
Confidence 356777777766 556899999999999888877776642 358899988777655443211
Q ss_pred eeccccCccceEEEcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccCh
Q 012322 86 RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (466)
Q Consensus 86 ~~~~~~~~~~~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~~ 162 (466)
.+.|..|..+.. ...+.+++|||||- .+....+ +.++. ....++||.|++.
T Consensus 240 ----------~i~~~~Pd~~~~------~~~~~dlliVDEAA--aIp~pll----~~ll~----~~~~v~~~tTv~G 290 (671)
T 2zpa_A 240 ----------KFRFIAPDALLA------SDEQADWLVVDEAA--AIPAPLL----HQLVS----RFPRTLLTTTVQG 290 (671)
T ss_dssp ----------GCCBCCHHHHHH------SCCCCSEEEEETGG--GSCHHHH----HHHHT----TSSEEEEEEEBSS
T ss_pred ----------CeEEeCchhhhh------CcccCCEEEEEchh--cCCHHHH----HHHHh----hCCeEEEEecCCc
Confidence 155667765432 34468999999986 5555543 44443 3346778888854
No 215
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.03 E-value=0.001 Score=70.27 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=52.5
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHH
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 71 (466)
+...|.+++..+..+..++|.||+|+|||+.+..++.......+.+++++.|+..++.++.+++.+
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 467888888888888899999999999997666555544333466899999999999998888753
No 216
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.02 E-value=0.0012 Score=65.07 Aligned_cols=64 Identities=13% Similarity=0.228 Sum_probs=39.2
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH-HHHhCCc
Q 012322 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV-AQELGVR 76 (466)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~-~~~~~~~ 76 (466)
+++.-+..|+.++|.|++|+|||+++..++.......+..+++... .....++..++ +...++.
T Consensus 192 ~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl-E~~~~~l~~R~~~~~~~i~ 256 (444)
T 2q6t_A 192 QLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL-EMPAAQLTLRMMCSEARID 256 (444)
T ss_dssp HHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES-SSCHHHHHHHHHHHHTTCC
T ss_pred hhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC-CCCHHHHHHHHHHHHcCCC
Confidence 3444466789999999999999999888887665433444444322 12234445554 3344433
No 217
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.02 E-value=0.0017 Score=60.54 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=26.4
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
.+......+..+++.||+|+|||+++..+......
T Consensus 17 ~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 17 EIAMVAPSDATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp HHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred HHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 33334456778999999999999998888775543
No 218
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.01 E-value=0.00068 Score=64.95 Aligned_cols=40 Identities=30% Similarity=0.481 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc
Q 012322 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (466)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~ 50 (466)
+.+--.+..|+.++|+|||||||||++..++.......+.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 3344567899999999999999999999999987765443
No 219
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.0026 Score=60.34 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=27.0
Q ss_pred HHHHHHhcCCE--EEEEcCCCCcHHHHHHHHHHhcC
Q 012322 12 TIVETVEQNPV--VVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 12 ~i~~~i~~~~~--~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.+...+..|+. +++.||+|+||||++..+.....
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 44456677776 89999999999999998887653
No 220
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.99 E-value=0.016 Score=59.56 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCC
Q 012322 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK 48 (466)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~ 48 (466)
+.+-..+..++.+++.||+|+||||++..+........
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 45666788999999999999999999999988776544
No 221
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.98 E-value=0.0027 Score=53.97 Aligned_cols=34 Identities=12% Similarity=0.360 Sum_probs=25.5
Q ss_pred HHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 11 ETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 11 ~~i~~~i~~--~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+.+.+.+.. ...+++.||+|+|||+++..+....
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 344444444 5688999999999999988877654
No 222
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00077 Score=71.35 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=51.9
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHH
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 71 (466)
+...|.+++..+..+..++|.||.|||||+.+..++.......+.+++++.|+..++.++.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 467888899988888899999999999996655544433211356899999999999999998865
No 223
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.97 E-value=0.0042 Score=59.03 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=29.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~ 55 (466)
-+..|+.++|.||+||||||++..++......++..+++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3457899999999999999998888766544444444443
No 224
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.96 E-value=0.011 Score=55.96 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=44.0
Q ss_pred EcCHHHHH------HHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecc
Q 012322 99 YLTDGVLL------REILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (466)
Q Consensus 99 ~~T~g~l~------~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (466)
-+|.|+.+ ++.+......+++++++||+- ..+|......++..+......+.++++.|+.
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~-~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~ 313 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPT-PYLDEERRRKLITIMERYLKKIPQVILVSHD 313 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCC-TTCCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 37888876 344555577889999999988 7888888777666665544445678887775
No 225
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.96 E-value=0.0091 Score=56.07 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=23.6
Q ss_pred HHHHHHhcCC---EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 12 TIVETVEQNP---VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 12 ~i~~~i~~~~---~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+.+.+..++ .+++.||+|+|||+++..+....
T Consensus 37 ~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 37 TFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4445555554 45777789999999998887654
No 226
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.96 E-value=0.0018 Score=62.88 Aligned_cols=93 Identities=25% Similarity=0.245 Sum_probs=58.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceEEE
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ 99 (466)
.+..+|.|+.|||||+.+...+.. ...+++.|++.++.++.+++.+. +. .......+
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~------~~~lVlTpT~~aa~~l~~kl~~~-~~----------------~~~~~~~V 217 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF------EEDLILVPGRQAAEMIRRRANAS-GI----------------IVATKDNV 217 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT------TTCEEEESCHHHHHHHHHHHTTT-SC----------------CCCCTTTE
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc------CCeEEEeCCHHHHHHHHHHhhhc-Cc----------------cccccceE
Confidence 347889999999999888665431 34588899999998887766321 10 01112234
Q ss_pred cCHHHHHHHHhhCCC--CCCCcEEEecCCCccccCHHHHHHHH
Q 012322 100 LTDGVLLREILSNPD--LSPYSVIILDEAHERSLNTDILLGLV 140 (466)
Q Consensus 100 ~T~g~l~~~~~~~~~--l~~~~~iIiDEah~~~~~~~~~~~~l 140 (466)
.|-+.++ ++... ....+++||||+- +++.+.+..++
T Consensus 218 ~T~dsfL---~~~~~~~~~~~d~liiDE~s--m~~~~~l~~l~ 255 (446)
T 3vkw_A 218 RTVDSFL---MNYGKGARCQFKRLFIDEGL--MLHTGCVNFLV 255 (446)
T ss_dssp EEHHHHH---HTTTSSCCCCCSEEEEETGG--GSCHHHHHHHH
T ss_pred EEeHHhh---cCCCCCCCCcCCEEEEeCcc--cCCHHHHHHHH
Confidence 5555433 22222 2248999999997 56666655433
No 227
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.95 E-value=0.0012 Score=62.86 Aligned_cols=35 Identities=17% Similarity=0.404 Sum_probs=27.2
Q ss_pred HHHHHHHHhcC--CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 10 EETIVETVEQN--PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 10 q~~i~~~i~~~--~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+.+...+..+ .++++.||+|+|||+++..+....
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566666666 569999999999999988877654
No 228
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.94 E-value=0.0014 Score=68.66 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
|+.++|+||+||||||++..+.+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 7899999999999999999888754
No 229
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.94 E-value=0.0011 Score=61.76 Aligned_cols=53 Identities=25% Similarity=0.380 Sum_probs=37.3
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch-hHHHHHHHHHHH
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVARRVA 70 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~-~~l~~~~~~~~~ 70 (466)
..|+.+.++|||||||||++..++......++...+...++ +..+.++...++
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~ 151 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWA 151 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHH
Confidence 35678999999999999999999988776666666665553 443333333333
No 230
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.93 E-value=0.00092 Score=66.92 Aligned_cols=38 Identities=29% Similarity=0.341 Sum_probs=31.4
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCC
Q 012322 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (466)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~ 49 (466)
.+...+..|++++|+|||||||||++..++.......+
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~g 289 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAK 289 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCC
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCC
Confidence 34456789999999999999999999999888765444
No 231
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.93 E-value=0.0049 Score=59.06 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=25.7
Q ss_pred HHHHHHhcCC---EEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 12 TIVETVEQNP---VVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 12 ~i~~~i~~~~---~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.+...+..++ .+++.||+|+|||+++..+.....
T Consensus 27 ~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 27 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455555555 479999999999999988877554
No 232
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.93 E-value=0.00055 Score=57.11 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=28.0
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~ 50 (466)
..|+.+.+.||+||||||++..++... +..|.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 789999999999999999999999987 54444
No 233
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.92 E-value=0.00092 Score=62.98 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH
Q 012322 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (466)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~ 69 (466)
++++.-+..|+.++|.|++|+|||+++..++..... .+..+++... .....++..++
T Consensus 37 D~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSl-Ems~~ql~~Rl 93 (338)
T 4a1f_A 37 DNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSL-EMSAEQLALRA 93 (338)
T ss_dssp HHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEES-SSCHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC-CCCHHHHHHHH
Confidence 344555778999999999999999998888776554 3444544432 12234444443
No 234
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.90 E-value=0.0047 Score=57.26 Aligned_cols=124 Identities=19% Similarity=0.166 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe-CchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceEE
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~-~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (466)
+..++++|++|+||||++..+.......++...++- .+.+..+.++.+.+.+..+..+.. + . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~--~-------~-~~----- 162 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--E-------P-GE----- 162 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC--C-------T-TC-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe--c-------C-CC-----
Confidence 447888999999999988888776655444444443 345555554444444444433211 0 0 00
Q ss_pred EcCHHHHHHHHhhCCCCCCCcEEEecCCCcccc--CHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSL--NTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 99 ~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~--~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
..|..+....+......+++++|||=+- +.- ..+.+...++.+......+.-++.+.|+.
T Consensus 163 -~~p~~~~~~~l~~~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 -KDVVGIAKRGVEKFLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 2344443222221111468999999987 333 22333333444443333355566666653
No 235
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.86 E-value=0.00069 Score=59.38 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=25.0
Q ss_pred HHHhcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+.+.+|+.+.|+||+||||||++..+.....
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3788999999999999999999999988763
No 236
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.86 E-value=0.005 Score=57.75 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=25.4
Q ss_pred HHHHHHHhcCC--EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 11 ETIVETVEQNP--VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 11 ~~i~~~i~~~~--~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+.+...+..++ .+++.||+|+|||+++..+....
T Consensus 35 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 35 KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 34445555554 69999999999999988777653
No 237
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.85 E-value=0.0017 Score=55.70 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=28.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~ 58 (466)
.++..++.||.||||||.+...+...... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccc
Confidence 46788999999999997777777665443 4566666664
No 238
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.83 E-value=0.013 Score=54.94 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=30.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc-hhHHH
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-RRVAA 62 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p-~~~l~ 62 (466)
.++.+.++|++|+||||++..+.......++...++-.. .+..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a 148 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 148 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhH
Confidence 455788999999999988888877665555555544443 34433
No 239
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.0061 Score=61.34 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+.+++.||+|+|||+++..+....
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 689999999999999999888765
No 240
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.83 E-value=0.0039 Score=58.63 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+.+++.||+|+|||+++..+....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3679999999999999999888765
No 241
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.83 E-value=0.0078 Score=56.94 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 10 EETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 10 q~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+.+.+.+..+..++|.||.|+|||+++..+....
T Consensus 21 l~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 34455566667899999999999999999887754
No 242
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.81 E-value=0.0029 Score=55.08 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=29.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~ 59 (466)
.|...++.|+-||||||.+...+..... .+.++++.+|..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli~k~~~ 66 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIVFKPCI 66 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEECC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEecc
Confidence 4667789999999999888777776644 355677777754
No 243
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.80 E-value=0.0043 Score=58.35 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+++.||+|+|||+++..+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4579999999999999998887764
No 244
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.78 E-value=0.0052 Score=56.96 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..+++.||+|+|||+++..+....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 6789999999999999999887754
No 245
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.77 E-value=0.0048 Score=57.56 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEE
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~ 54 (466)
..+++.||+|+|||+++..+........+..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 4789999999999999998887665444444433
No 246
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.75 E-value=0.0017 Score=61.70 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=37.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch-hHHHHHHHHHHH
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVARRVA 70 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~-~~l~~~~~~~~~ 70 (466)
.|+.+.++|||||||||++..+.......++...+...++ +..+.++...++
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~ 208 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWA 208 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHH
Confidence 5678999999999999999999988776666666666553 443333333333
No 247
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.74 E-value=0.0073 Score=57.28 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=28.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEE
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~ 54 (466)
+..|+.+.|.||+||||||++..++......++..+++
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyI 95 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFI 95 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 44578999999999999999998887765544444444
No 248
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.73 E-value=0.0021 Score=59.25 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.0
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..+..+++.||+|+|||+++..+....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456789999999999999998887754
No 249
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.72 E-value=0.011 Score=55.39 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+++.||+|+|||+++..+....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3678999999999999998887654
No 250
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.72 E-value=0.0064 Score=56.65 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+.++++.||+|+|||+++..+....
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4479999999999999887766544
No 251
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.67 E-value=0.011 Score=57.32 Aligned_cols=124 Identities=18% Similarity=0.208 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe-CchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceEE
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~-~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (466)
++.+.++|++|+||||++..+.......++...++- .+.+..+.++...+++..+..+. . .. ..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~---~-----~~-~~------ 162 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVL---E-----VM-DG------ 162 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEE---E-----CC-TT------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEE---e-----cC-CC------
Confidence 457888999999999988888877665544444443 34555554444444444443221 0 00 00
Q ss_pred EcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 99 ~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
..|..+....+......+++++|||=+-....+.....+ +..+.........++.+.|+-
T Consensus 163 -~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~e-l~~i~~~~~pd~vlLVvDa~t 222 (425)
T 2ffh_A 163 -ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE-LARLKEVLGPDEVLLVLDAMT 222 (425)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHH-HHHHHHHHCCSEEEEEEEGGG
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHH-HHHhhhccCCceEEEEEeccc
Confidence 133333222221111246899999987522334333333 334433333355566677764
No 252
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.66 E-value=0.0039 Score=59.54 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+++.||+|+|||+++..+....
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3568999999999999998888765
No 253
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.66 E-value=0.0012 Score=57.44 Aligned_cols=28 Identities=11% Similarity=0.401 Sum_probs=24.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..|+.++++||+||||||++..+....
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999988864
No 254
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.64 E-value=0.0023 Score=59.59 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=32.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~ 58 (466)
.++.+.++||+||||||++..+.......++...+...+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 4779999999999999999999988877766666666553
No 255
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.64 E-value=0.0029 Score=61.58 Aligned_cols=44 Identities=23% Similarity=0.144 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHcccccCCCC-CCHHHHH-HccCC--CCHHHHHH
Q 012322 392 PSSESLEDALKQLYLIDAIDENGS-ITSIGRT-MAELP--LEPSLSRM 435 (466)
Q Consensus 392 p~~~~~~~~l~~L~~~~~l~~~~~-~T~lG~~-~~~~~--~~~~~~~~ 435 (466)
.....+..+++.|...|+|..... -...|+. ..++. +++..-..
T Consensus 350 ~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~~~~~~~~~~~ 397 (412)
T 1w5s_A 350 RGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLAPHLPADRLIE 397 (412)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEECC-------CCEEEECTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeCCCCCHHHHHH
Confidence 356678889999999999965321 1124443 45566 77765433
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.63 E-value=0.0011 Score=58.54 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=24.6
Q ss_pred HHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
-.+..|+.++|+||+||||||++..++...
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356789999999999999999999999876
No 257
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.63 E-value=0.0093 Score=54.45 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+++.||+|+|||+++..+....
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3468999999999999998887753
No 258
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.58 E-value=0.0043 Score=54.58 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=30.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~ 59 (466)
.|...++.|+-||||||.+...+..... .+.++++..|.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~-~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT-TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEeecC
Confidence 5778899999999999877777666543 455677777754
No 259
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.57 E-value=0.0011 Score=63.81 Aligned_cols=41 Identities=32% Similarity=0.486 Sum_probs=31.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcC-CCcEEEEeCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQP 57 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~-~~~~i~~~~p 57 (466)
+..|+.++|+|||||||||++..++...... .+..+.+-.|
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 5678899999999999999999999877654 3444344444
No 260
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.57 E-value=0.0016 Score=55.55 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=24.2
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
..|+.++++||+||||||++..+.....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999999887653
No 261
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.57 E-value=0.0075 Score=58.34 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+++.||+|+|||+++..+....
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999998887653
No 262
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.55 E-value=0.0044 Score=65.48 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=49.0
Q ss_pred EEEcCHHHHHHHHhhCCCCCC---CcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 97 IKYLTDGVLLREILSNPDLSP---YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~---~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
+.-+|.|+.++..++..+..+ .+++|+||+- ..+|......+++.+.+....+..+|+.|+.++
T Consensus 728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT-sGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~ 794 (842)
T 2vf7_A 728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPT-TGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ 794 (842)
T ss_dssp GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 445889999999988887775 6999999998 788888777766655555444677888888653
No 263
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.55 E-value=0.0072 Score=64.41 Aligned_cols=62 Identities=24% Similarity=0.235 Sum_probs=46.7
Q ss_pred EcCHHHHHHHHhhCCCCCC---CcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 99 YLTDGVLLREILSNPDLSP---YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 99 ~~T~g~l~~~~~~~~~l~~---~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
-+|.|+.++..++..+..+ .+++|+||+- ..+|......+++.+.+....+..+|+.|+-++
T Consensus 805 ~LSGGErQRV~LAraL~~~p~~p~LLILDEPT-sGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~ 869 (916)
T 3pih_A 805 TLSGGEAQRIKLASELRKRDTGRTLYILDEPT-VGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869 (916)
T ss_dssp TCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4789999998887775544 5799999998 788888777766666555444677888888664
No 264
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.53 E-value=0.0017 Score=57.31 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=25.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
...+|+.++|+||+||||||++..++....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 467899999999999999999999998765
No 265
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.53 E-value=0.0055 Score=64.63 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.8
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHh
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.+|+.++|+||+||||||++..+.+.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 36789999999999999999988774
No 266
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.52 E-value=0.011 Score=55.77 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..+++.||+|+|||+++..+....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 478999999999999998886654
No 267
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.52 E-value=0.0037 Score=61.52 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.4
Q ss_pred HHHHHhcCC--EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 13 IVETVEQNP--VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 13 i~~~i~~~~--~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+...+..++ .+++.||+|+|||+++..+....
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 345566665 58999999999999999887765
No 268
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.51 E-value=0.0021 Score=59.63 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=27.4
Q ss_pred HHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 14 VETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 14 ~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
--.+..|+.+.|+||+||||||++..+++..
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3356789999999999999999999999877
No 269
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.50 E-value=0.0014 Score=56.90 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=22.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
..|+.++|+||+||||||++..++....
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3678899999999999999999987653
No 270
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.40 E-value=0.0056 Score=58.47 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
....+++.||+|+|||+++..+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999887754
No 271
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.40 E-value=0.0014 Score=56.39 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.+.+|+.++++||+||||||++..+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678899999999999999999998875
No 272
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.36 E-value=0.0095 Score=64.59 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
|+.++|+||+||||||++.++ +.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HH
Confidence 789999999999999999888 53
No 273
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.35 E-value=0.014 Score=54.54 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=25.0
Q ss_pred HHHHHHHhcCC--EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 11 ETIVETVEQNP--VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 11 ~~i~~~i~~~~--~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+.+...+..++ ++++.||+|+|||+++..+....
T Consensus 31 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 31 DRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 34555555554 48999999999999888776653
No 274
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.32 E-value=0.0022 Score=55.01 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
++.++++||+||||||++..++....
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999988764
No 275
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.30 E-value=0.012 Score=54.74 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=22.8
Q ss_pred HHHHHhcCC--EEEEEcCCCCcHHHHHHHHHH
Q 012322 13 IVETVEQNP--VVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 13 i~~~i~~~~--~~ii~apTGsGKTt~~~~~~~ 42 (466)
+...+.+++ ..++.||.|+|||+.+..+..
T Consensus 9 L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 9 LKRIIEKSEGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444555555 689999999999988877655
No 276
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.27 E-value=0.0048 Score=53.63 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=28.1
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~ 59 (466)
..|...+++||-||||||.+...+..... .+.++++..|..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~-~g~kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY-AKQKVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH-cCCceEEEEecc
Confidence 45778899999999999855555554433 345677777754
No 277
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.27 E-value=0.0034 Score=56.43 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=23.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..|+.++|.|++|+|||+++..++...
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999888777653
No 278
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.26 E-value=0.01 Score=63.24 Aligned_cols=64 Identities=23% Similarity=0.245 Sum_probs=47.5
Q ss_pred EEEcCHHHHHHHHhhCCCCCC---CcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 97 IKYLTDGVLLREILSNPDLSP---YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 97 i~~~T~g~l~~~~~~~~~l~~---~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
+.-+|.|+.++..++..+..+ .+++|+||+- ..+|......+++.+.+....+..+|+.|+.++
T Consensus 861 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT-sGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~ 927 (993)
T 2ygr_A 861 APTLSGGEAQRVKLASELQKRSTGRTVYILDEPT-TGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD 927 (993)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 334788998888877776654 5999999998 788888877766666555444677888888654
No 279
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.20 E-value=0.0014 Score=57.44 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=24.9
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
..|+.+.|.||+||||||++..+......
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35778999999999999999998887654
No 280
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.20 E-value=0.003 Score=55.04 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=24.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..|..++++||+||||||++..+....
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5678999999999999999999888765
No 281
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.18 E-value=0.008 Score=54.40 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=21.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
....+++.||+|+|||+++..+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999998887754
No 282
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.17 E-value=0.0026 Score=59.48 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=27.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~ 49 (466)
+..|..+.|.||+||||||++..+........|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 567889999999999999999999887765433
No 283
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.17 E-value=0.0033 Score=55.04 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
..|+.++++||+||||||++..++....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998887653
No 284
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.10 E-value=0.0043 Score=53.53 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=24.2
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
..|+.++|+||+|+||||++..++....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998887643
No 285
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.10 E-value=0.0068 Score=58.05 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+.+++.||+|+|||+++..+.....
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999998887665
No 286
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.10 E-value=0.039 Score=52.14 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+.+.+ +.. ..++|.||.|+|||+++..+....
T Consensus 23 ~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 23 EKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 34445 555 789999999999999998887765
No 287
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.09 E-value=0.0072 Score=59.74 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+.+++.||+|+|||+++..+....
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999999888754
No 288
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.04 E-value=0.006 Score=56.97 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=23.4
Q ss_pred HHHHHhcCC--EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 13 IVETVEQNP--VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 13 i~~~i~~~~--~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+...+..++ ++++.||+|+|||+++..+....
T Consensus 29 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 29 LKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp HHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 333444444 58999999999999888777654
No 289
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.00 E-value=0.0075 Score=62.56 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=48.6
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHHH-HHHHHhcCc--CCCcEEEEeCchhHHHHHHHHHHHHHhCC
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQL-SQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQELGV 75 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~-~~~~~~~~~--~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 75 (466)
+.+.|.+++. ..+..++|.|+.|||||+.+ ..+...... ....+++++.+++.++.++.+++.+..+.
T Consensus 10 Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 10 LNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp CCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 5677888776 34667899999999999544 334333221 12357888888999999999998877653
No 290
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.98 E-value=0.027 Score=53.48 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=28.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~ 55 (466)
+..|+.++|.|++|+||||++..++......++..+++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 457889999999999999998888776544333344433
No 291
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.94 E-value=0.0024 Score=56.84 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=19.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHH-Hhc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQIL-HRH 44 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~-~~~ 44 (466)
.+..|+.++++||+||||||++..+. ...
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999999888 654
No 292
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.93 E-value=0.012 Score=57.81 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+.+++.||+|+|||+++..+....
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999888765
No 293
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.92 E-value=0.0034 Score=53.99 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCcCCC
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~~~~~ 49 (466)
|+.+.++||+||||||++..++.... ..|
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 56789999999999999999988776 444
No 294
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.92 E-value=0.0073 Score=58.49 Aligned_cols=29 Identities=34% Similarity=0.407 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCcCCCc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~~~~~~~ 50 (466)
.+.++||||+||||++..+.+......|.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~Gs 99 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGA 99 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCce
Confidence 99999999999999999999977665554
No 295
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.90 E-value=0.045 Score=52.12 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=28.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~ 55 (466)
-+..|+.++|.||+|+|||+++..++......++..+++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3457889999999999999988877765543334444443
No 296
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.89 E-value=0.012 Score=54.98 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=28.6
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcC--cCCCcEEE
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHG--YTKSGIIG 53 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~--~~~~~~i~ 53 (466)
..+..+.|.||+||||||++..+..... +..|...+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 5677899999999999999999988765 45555444
No 297
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.84 E-value=0.0048 Score=53.98 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=23.8
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
..+..+.|.||+||||||++..+.....
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5677899999999999999999888653
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.83 E-value=0.0062 Score=52.85 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=23.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..++.++++||+||||||++..+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999888765
No 299
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.81 E-value=0.015 Score=57.06 Aligned_cols=44 Identities=7% Similarity=0.139 Sum_probs=32.6
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeC
Q 012322 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ 56 (466)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~ 56 (466)
+++.-+..|+.++|.|++|+|||+++..++...... +..+++..
T Consensus 189 ~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fS 232 (444)
T 3bgw_A 189 RMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHS 232 (444)
T ss_dssp HHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEEC
T ss_pred hhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEE
Confidence 344446678999999999999999988888766544 44555544
No 300
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.81 E-value=0.0088 Score=56.66 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=33.0
Q ss_pred HHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc
Q 012322 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (466)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p 57 (466)
-.+.+|+.+.|.||+|+||||++..++.....+.+...++...
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 3467899999999999999999999999876554433344443
No 301
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.80 E-value=0.0067 Score=59.28 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
.+++++|++|+||||++..+......
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 37889999999999888877776543
No 302
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.77 E-value=0.0052 Score=56.12 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCcCCCc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~~~~~~~ 50 (466)
++.++||+|+||||++..+++...+..|.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~ 32 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKAS 32 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 47889999999999999999987665554
No 303
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.75 E-value=0.053 Score=52.91 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=62.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE--EeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceEE
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG--VTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~--~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (466)
.+++++|++|+||||++..++.......|.+++ -.-|.+..+.++...+....+..+... + ..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~-~---------~~----- 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPS-D---------VG----- 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCC-C---------SS-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeC-C---------CC-----
Confidence 367888999999998877776655443133333 344555555555444444444332110 0 00
Q ss_pred EcCHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 99 ~~T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
..+..+....+......+++++|||=+-....+...... +..+.........++.+.|+.
T Consensus 166 -~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~-L~~~~~~~~p~~vllVvda~~ 225 (433)
T 2xxa_A 166 -QKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDE-IKQVHASINPVETLFVVDAMT 225 (433)
T ss_dssp -SCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHH-HHHHHHHSCCSEEEEEEETTB
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHH-HHHHHHhhcCcceeEEeecch
Confidence 134444322222111146899999997622233333332 444433323244555567764
No 304
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.75 E-value=0.007 Score=54.19 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=28.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~ 55 (466)
.+..|+.++|.||+|+||||++..++......++..+++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3568899999999999999998777665443334444443
No 305
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.68 E-value=0.0057 Score=54.97 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=24.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+.++..+.|.||+||||||++..+....
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999999887754
No 306
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.66 E-value=0.0084 Score=51.93 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=23.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+..++.++++|++||||||++..+....
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45678899999999999999999888765
No 307
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.65 E-value=0.015 Score=50.41 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=26.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG 53 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~ 53 (466)
.+..+.|.|++||||||++..+.......++..++
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 45689999999999999999888766444444333
No 308
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.64 E-value=0.0082 Score=52.02 Aligned_cols=30 Identities=30% Similarity=0.247 Sum_probs=25.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
....|..+++.||+||||||++..+.....
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346788999999999999999999887765
No 309
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.61 E-value=0.021 Score=53.36 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHHHhcCC------EEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 13 IVETVEQNP------VVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 13 i~~~i~~~~------~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+...+..+. .+.|.||+||||||++..+.....
T Consensus 79 ~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 79 ATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334455554 789999999999999998877654
No 310
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.57 E-value=0.045 Score=62.78 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=29.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p 57 (466)
+..++++++.||+|+|||+++.+++...... +.++.++..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~-G~~v~Fi~~ 1463 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDA 1463 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEEc
Confidence 4468999999999999999988887766543 445555443
No 311
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.54 E-value=0.0099 Score=50.52 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
...+|+|||||||||++.++.....
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3789999999999999998877654
No 312
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.54 E-value=0.0071 Score=57.18 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=31.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~ 55 (466)
+.++..+.++||+||||||++..++......++...+..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 346889999999999999999999987766556554444
No 313
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.54 E-value=0.017 Score=57.44 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=22.5
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.....+++.||+|+|||+++..+....
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 345679999999999999998887654
No 314
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.53 E-value=0.009 Score=50.27 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.+..++++||+||||||++..+.....
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 357889999999999999998887653
No 315
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.50 E-value=0.056 Score=53.73 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=62.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEE-eCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccceEEEc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYL 100 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~-~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ 100 (466)
+++++|++|+||||++..++......+....++ .-+.+..+.++.+......+..+ .+.. .. .
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~~~------~~-------~ 166 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF---YGSY------TE-------M 166 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EECC------CC-------S
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE---EccC------CC-------C
Confidence 678899999999998888876554332333333 33445555554444444444331 1100 00 0
Q ss_pred CHHHHHHHHhhCCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEecccC
Q 012322 101 TDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (466)
Q Consensus 101 T~g~l~~~~~~~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~~ 161 (466)
.|..+....+......+++++|||-+-....+..+... +..+......+..++.+.|+..
T Consensus 167 dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~e-l~~~~~~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEE-MLQVANAIQPDNIVYVMDASIG 226 (504)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHH-HHHHHHHHCCSEEEEEEETTCC
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHH-HHHHHhhhcCceEEEEEecccc
Confidence 12222111111111146899999998733333344333 3333322233666778888764
No 316
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.50 E-value=0.065 Score=53.64 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH
Q 012322 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (466)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~ 69 (466)
++++.-+..|+.++|.|++|+|||+++..++.......+..+++... .....++..++
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES-SSCHHHHHHHH
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHH
Confidence 44444577899999999999999999988888766542434444322 12234555544
No 317
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.47 E-value=0.028 Score=59.37 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
++++.||||+|||+++..+....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999888777655
No 318
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.025 Score=54.25 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=22.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
..+-+++.||+|+|||.++.+++....
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 346789999999999999998887653
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.43 E-value=0.0068 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 012322 20 NPVVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~ 42 (466)
|+.++++||+||||||++..+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 45788999999999999998876
No 320
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.35 E-value=0.0097 Score=50.22 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=22.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+++.++++|++||||||++..+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999887654
No 321
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.32 E-value=0.015 Score=56.93 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=33.5
Q ss_pred HHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeC
Q 012322 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ 56 (466)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~ 56 (466)
-.+.+|+.+.|.||+||||||++..++.....+.+...++..
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 456789999999999999999999999988765554444444
No 322
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.31 E-value=0.0092 Score=53.02 Aligned_cols=37 Identities=35% Similarity=0.440 Sum_probs=28.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~ 58 (466)
.+|..+.+.|++||||||++..+... ++...+...|.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 46778999999999999999987765 34555666663
No 323
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.30 E-value=0.0098 Score=51.73 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=24.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..+..++++||+||||||++..+....
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999999999999999887765
No 324
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.22 E-value=0.02 Score=53.20 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=27.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~ 50 (466)
.+..|+.+.+.||+|+||||++..++ ...+..|.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~ 194 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQE 194 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccc
Confidence 34568899999999999999999998 66555444
No 325
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.19 E-value=0.012 Score=57.98 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=29.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG 53 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~ 53 (466)
+.+ +.+.|+||+||||||++..+.+...+..|...+
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 62 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF 62 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 345 889999999999999999999988776665443
No 326
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.15 E-value=0.013 Score=52.72 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+..++|+||+||||||++..+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999988443
No 327
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.11 E-value=0.029 Score=49.74 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=30.2
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~ 59 (466)
..|..+++.|+.||||||++..+...... +...+..-.|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~ 64 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGG 64 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCC
Confidence 36778999999999999999998887765 333433444543
No 328
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.10 E-value=0.028 Score=47.63 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=26.1
Q ss_pred HHHHHHHHhcC--CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 10 EETIVETVEQN--PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 10 q~~i~~~i~~~--~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+.+.+.+..+ ..+++.||+|+|||+++..+....
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34455555543 679999999999999988777654
No 329
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.02 E-value=0.02 Score=54.28 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=27.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcC-cCCCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG-YTKSG 50 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~-~~~~~ 50 (466)
...|+.++++||+|+||||++..++.... ...|.
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~ 246 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGLQNEILTND 246 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhccccccccCC
Confidence 45789999999999999999999998766 54443
No 330
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.93 E-value=0.017 Score=53.64 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=26.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~ 50 (466)
+..++.+.+.||+|+||||++..+.....+..|.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~ 199 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSE 199 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC---
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccc
Confidence 4568899999999999999999998876654443
No 331
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.90 E-value=0.016 Score=47.59 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
....+|+||||||||+++.++...
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999998877653
No 332
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.89 E-value=0.015 Score=54.57 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+.++|+|++||||||++..++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 468999999999999999998764
No 333
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.86 E-value=0.019 Score=49.07 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+.++|+||+|+||||++..++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999998887654
No 334
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.84 E-value=0.024 Score=59.00 Aligned_cols=68 Identities=25% Similarity=0.252 Sum_probs=47.9
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHHH-HHHHHhcC--cCCCcEEEEeCchhHHHHHHHHHHHHHhCC
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQL-SQILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELGV 75 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~~-~~~~~~~~--~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 75 (466)
+.+.|.+++.. .+..++|.|+.|||||+.+ ..+..... ......++++..++.++.++.+++.+..+.
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 46678777765 3678899999999999444 33433321 113357888888889999999988876553
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.83 E-value=0.021 Score=48.67 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=25.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCC
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~ 49 (466)
.+..++++|+.||||||++..+.......++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~ 42 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGY 42 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 5678999999999999999988876654333
No 336
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.83 E-value=0.033 Score=57.09 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
.++|+||+||||||++..+.+...+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4789999999999999999987644
No 337
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.049 Score=53.08 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=23.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
..+-+++.||+|+|||+++.+++....
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 457799999999999999998887653
No 338
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.76 E-value=0.023 Score=51.27 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..+..+.|.||+||||||++..+....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 467889999999999999999998654
No 339
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.73 E-value=0.024 Score=47.85 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+..++++|++||||||+...+.....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56789999999999999998887654
No 340
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.68 E-value=0.014 Score=55.91 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=27.6
Q ss_pred HHhc--CCEEEEEcCCCCcHHHHHHHHHHhcCcCC
Q 012322 16 TVEQ--NPVVVVIGETGSGKSTQLSQILHRHGYTK 48 (466)
Q Consensus 16 ~i~~--~~~~ii~apTGsGKTt~~~~~~~~~~~~~ 48 (466)
.+.. ++.+.|+||+||||||++..+.+......
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 3456 88999999999999999999998776543
No 341
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.65 E-value=0.023 Score=53.62 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+.+++.||+|+||||++..+....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999988865
No 342
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.63 E-value=0.059 Score=57.74 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=24.5
Q ss_pred HHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 12 TIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 12 ~i~~~i~~--~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+++.+.. ..+++++||+|+|||+++..+....
T Consensus 181 ~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 181 RVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34444433 3468999999999999998887765
No 343
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.60 E-value=0.016 Score=50.44 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.9
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+++.+..+..++|+|++||||||++..+....
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34456678889999999999999999887643
No 344
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.53 E-value=0.042 Score=47.05 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=26.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p 57 (466)
+...+++.+++|.||||.+..+...... .|.++++++=
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g-~G~rV~~vQF 64 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVG-HGKNVGVVQF 64 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHH-TTCCEEEEES
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEe
Confidence 3457788899999999887766665543 3556666643
No 345
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.53 E-value=0.028 Score=47.80 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...++++|++||||||+...+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999887755
No 346
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.52 E-value=0.019 Score=53.67 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..++|+||||||||++...++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4578999999999999988887644
No 347
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.51 E-value=0.013 Score=49.32 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCcC
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHGYT 47 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~~~ 47 (466)
+.+.|+|++||||||++..++......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 468899999999999999998877654
No 348
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.51 E-value=0.016 Score=56.18 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=25.9
Q ss_pred HHHHHhcCCE--EEEEcCCCCcHHHHHHHHHHh
Q 012322 13 IVETVEQNPV--VVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 13 i~~~i~~~~~--~ii~apTGsGKTt~~~~~~~~ 43 (466)
+--.+..|.. +.|+||+|+||||++..+++.
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4445778998 999999999999999999875
No 349
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.50 E-value=0.022 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.++|+|||||||||+...+....
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999999887754
No 350
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.49 E-value=0.029 Score=54.16 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=30.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhH
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV 60 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~ 60 (466)
.+.+++|.|||||||||++..++...... +..+++.-|...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-CCEEEEEeCCcC
Confidence 56789999999999999998888766443 445666666543
No 351
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.42 E-value=0.043 Score=57.61 Aligned_cols=67 Identities=21% Similarity=0.178 Sum_probs=47.0
Q ss_pred chHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcC--cCCCcEEEEeCchhHHHHHHHHHHHHHhC
Q 012322 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (466)
Q Consensus 6 i~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~--~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 74 (466)
+.+.|.+++.. .+..++|.|+.|||||+. ...+..... ......++++..++.++.++.+++.+..+
T Consensus 12 Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 45677777765 356788999999999944 444443332 11235788888999999999888877654
No 352
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.39 E-value=0.028 Score=49.58 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..+.|+||+||||||++..+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999887754
No 353
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.38 E-value=0.029 Score=46.87 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 22 VVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.++++|+.||||||++..+.....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999999999999998877543
No 354
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.34 E-value=0.025 Score=52.19 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..++|+||||||||++...++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4568899999999999988887644
No 355
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.33 E-value=0.022 Score=48.42 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=22.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.|..++++|++||||||+...+....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46678999999999999999887644
No 356
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.32 E-value=0.029 Score=47.83 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+..+++.|+.||||||++..+.....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57889999999999999998877543
No 357
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.30 E-value=0.047 Score=60.85 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=49.4
Q ss_pred CCchHhHHHHHHHHhcCCEEEEEcCCCCcHHHH-HHHHHHhcCcC----CCcEEEEeCchhHHHHHHHHHHHHHh
Q 012322 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYT----KSGIIGVTQPRRVAAVSVARRVAQEL 73 (466)
Q Consensus 4 lpi~~~q~~i~~~i~~~~~~ii~apTGsGKTt~-~~~~~~~~~~~----~~~~i~~~~p~~~l~~~~~~~~~~~~ 73 (466)
....+.|.+++..- +++++|.|.-|||||+. +..++...... ....++++.+++.++.++.+++.+.+
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 44567788887753 77899999999999954 44444443321 33489999999999999999886644
No 358
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.29 E-value=0.061 Score=46.62 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
.+..+++.|+.||||||++..+......
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4567899999999999999988876654
No 359
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.25 E-value=0.025 Score=47.32 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.9
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 012322 21 PVVVVIGETGSGKSTQLSQI 40 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~ 40 (466)
..++++|++||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36789999999999999888
No 360
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.24 E-value=0.029 Score=47.47 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=23.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.|..++++|++||||||++..+.....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 577889999999999999998877553
No 361
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.17 E-value=0.025 Score=56.95 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=29.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEE
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII 52 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i 52 (466)
+.+|+.++++|++||||||++..+.......++..+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i 401 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCV 401 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCE
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceE
Confidence 457889999999999999999999887766554333
No 362
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.16 E-value=0.031 Score=49.01 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=24.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+.+.+++++.||+||||+|++..+....
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566788999999999999999887755
No 363
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.10 E-value=0.043 Score=49.08 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=22.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.....+++.||.||||||++..+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 355678999999999999999887654
No 364
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.10 E-value=0.17 Score=58.12 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=52.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHHHHHhCCccCCeeeeeEeeccccCccc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (466)
.+..++++++.||+|||||+++.+++...... |.+++++.- ..+..++. ++.+|.......-. .+.
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~-Ge~~~Fit~-ee~~~~L~---a~~~G~dl~~l~~~--------~pd- 1142 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDA-EHALDPIY---ARKLGVDIDNLLCS--------QPD- 1142 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECT-TSCCCHHH---HHHTTCCTTTCEEE--------CCS-
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEc-cccHHHHH---HHHcCCChhHheee--------cCc-
Confidence 46789999999999999999999888876554 444444432 11122222 34555554332211 010
Q ss_pred eEEEcCHHHHHHHHhhCCCCCCCcEEEecCCC
Q 012322 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAH 127 (466)
Q Consensus 96 ~i~~~T~g~l~~~~~~~~~l~~~~~iIiDEah 127 (466)
+.+...+....-.....+++|||||..
T Consensus 1143 -----~~e~~~~i~~~l~~~~~~dlvVIDsl~ 1169 (2050)
T 3cmu_A 1143 -----TGEQALEICDALARSGAVDVIVVDSVA 1169 (2050)
T ss_dssp -----SHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred -----chHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 223332222111124578999999965
No 365
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.08 E-value=0.034 Score=49.99 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
|+.++++|++||||||++..+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999998887553
No 366
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.08 E-value=0.032 Score=47.18 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.8
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..+..++++|++||||||++..+....
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999887654
No 367
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.07 E-value=0.039 Score=48.72 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=21.9
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.....+++.|++||||||++..+....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 455789999999999999999887654
No 368
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.07 E-value=0.048 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..++++||+||||||++..+....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999887654
No 369
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.07 E-value=0.1 Score=54.78 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+-+++.||.|+|||+++..++...
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999888754
No 370
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.04 E-value=0.027 Score=48.28 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=20.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.+..++|.||||+|||+++..++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3566899999999999998877653
No 371
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.02 E-value=0.046 Score=46.76 Aligned_cols=28 Identities=32% Similarity=0.651 Sum_probs=23.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+..++++|+.||||||++..+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999999999999887654
No 372
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.02 E-value=0.048 Score=45.95 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
..++++|++||||||++..++....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5688999999999999998887654
No 373
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.00 E-value=0.045 Score=46.96 Aligned_cols=31 Identities=29% Similarity=0.599 Sum_probs=25.4
Q ss_pred HHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 14 VETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 14 ~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+..+..++++|+.||||||++..+....
T Consensus 6 ~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 6 MEDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445667889999999999999998887754
No 374
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.98 E-value=0.022 Score=49.78 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=25.9
Q ss_pred HHHhcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
..+..+..++++|++||||||++..+.....
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467788999999999999999998877654
No 375
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.98 E-value=0.0081 Score=55.74 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=24.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
.+.+|+.+.++||+|+||||++..++.....
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~ 199 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGL 199 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC----
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccc
Confidence 3457899999999999999999998765443
No 376
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.98 E-value=0.051 Score=45.48 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
..+.++|++||||||++..++.....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 46789999999999999888876543
No 377
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.96 E-value=0.041 Score=46.83 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=22.5
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHh
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
..+..++++|+.||||||+...+...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999888775
No 378
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.96 E-value=0.083 Score=56.59 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
..+++.||||+|||+++..+......
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999998888776543
No 379
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.93 E-value=0.026 Score=53.91 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=0.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~ 42 (466)
+..| .++|+|||||||||++.++..
T Consensus 21 ~~~g-~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 21 FQSG-ITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHH
No 380
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.89 E-value=0.033 Score=48.11 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...++++|++||||||++..+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999887754
No 381
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.89 E-value=0.043 Score=51.24 Aligned_cols=56 Identities=7% Similarity=0.137 Sum_probs=36.5
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHHHHHHHHH
Q 012322 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (466)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~ 69 (466)
+++--+..|+.++|.|++|+|||+++..++......+ ..+++...- ....++..++
T Consensus 60 ~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE-~s~~~l~~R~ 115 (315)
T 3bh0_A 60 RMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLE-MGKKENIKRL 115 (315)
T ss_dssp HHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESS-SCHHHHHHHH
T ss_pred hhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECC-CCHHHHHHHH
Confidence 4444567889999999999999999888877654433 445444321 2334444444
No 382
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.87 E-value=0.038 Score=52.82 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+..++.+++.||+||||||++..+....
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35678899999999999999999888753
No 383
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.81 E-value=0.055 Score=50.75 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=24.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+..|+.++|.||+|+|||+++..++....
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 45688999999999999999888887643
No 384
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.78 E-value=0.04 Score=46.43 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 012322 21 PVVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~ 42 (466)
..+++.|++||||||++..+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3578999999999999988876
No 385
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.77 E-value=0.034 Score=47.51 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+..++++|+.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999887654
No 386
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.75 E-value=0.039 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..++|+||||||||+++..+....
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 467899999999999988887654
No 387
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.69 E-value=0.094 Score=45.78 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=29.2
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCch
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~ 58 (466)
..|..+++.|+.||||||++..+.......+-..+..-.|.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~ 44 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG 44 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 45778999999999999999988776644333344445564
No 388
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.69 E-value=0.043 Score=47.36 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+..++++|+.||||||++..+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999887754
No 389
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.67 E-value=0.079 Score=50.09 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=24.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..|+.+.|.||+|||||+++..++...
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998888764
No 390
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.67 E-value=0.1 Score=45.56 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=29.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCC-cEEEEeCchh
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKS-GIIGVTQPRR 59 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~-~~i~~~~p~~ 59 (466)
.|..+++.|+.||||||++..+.......+- ..++.-.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~ 43 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG 43 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCC
Confidence 4788999999999999999888776544332 3344555653
No 391
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.62 E-value=0.013 Score=51.84 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCcCCCcEE
Q 012322 22 VVVVIGETGSGKSTQLSQILHRHGYTKSGII 52 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i 52 (466)
.+.|+|||||||||++.++.+...+..|...
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~ 59 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLH 59 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEE
Confidence 4567899999999999999998877666443
No 392
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.61 E-value=0.097 Score=49.58 Aligned_cols=39 Identities=21% Similarity=0.125 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEE-EeCch
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-VTQPR 58 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~-~~~p~ 58 (466)
+..+.++|++|+||||++..++......++...+ ...|.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 4578999999999999999998866554444333 33443
No 393
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.57 E-value=0.046 Score=47.26 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 012322 22 VVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~ 42 (466)
.++|+|++||||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 578999999999999998877
No 394
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.50 E-value=0.044 Score=47.52 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
....+|+|||||||||++.++....
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3577899999999999988776544
No 395
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.48 E-value=0.046 Score=49.90 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+-+++.||+||||||++..+.....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3489999999999999999988654
No 396
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.48 E-value=0.042 Score=50.56 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+..+.|.|++||||||++..+.....
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44789999999999999988777654
No 397
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.42 E-value=0.075 Score=46.20 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=27.9
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p 57 (466)
..+..++++|+.||||||++..+........-.......|
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~ 46 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP 46 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCC
Confidence 4577899999999999999998876543322223334444
No 398
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.41 E-value=0.075 Score=47.83 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+++.||+|+|||+++..+....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4578999999999999999887755
No 399
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.38 E-value=0.051 Score=50.95 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..++|+|||||||||+...+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 468999999999999998887754
No 400
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.38 E-value=0.045 Score=47.41 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 012322 22 VVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~ 42 (466)
.+.+.|++||||||+...+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998865
No 401
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.35 E-value=0.048 Score=49.05 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+.+++.||+|+||||++..+.....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999887653
No 402
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.33 E-value=0.059 Score=56.73 Aligned_cols=78 Identities=9% Similarity=0.067 Sum_probs=64.9
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEecc-cccccccCC
Q 012322 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI-AETSLTVDG 291 (466)
Q Consensus 213 ~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~-~~~Gidip~ 291 (466)
+.+++|.+||+.-+++.++.+.+.+.. .++.+..+||+++..+|....+.+.+|..+|+|+|.. +...+++.+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~------~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~ 490 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK------FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 490 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC------SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh------cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccC
Confidence 468999999999999999999887643 2677899999999999988888888899999999963 344577788
Q ss_pred eEEEE
Q 012322 292 VVYVI 296 (466)
Q Consensus 292 v~~VI 296 (466)
+.+||
T Consensus 491 l~lVV 495 (780)
T 1gm5_A 491 LGLVI 495 (780)
T ss_dssp CCEEE
T ss_pred CceEE
Confidence 87665
No 403
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.30 E-value=0.055 Score=50.37 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..++|+|||||||||+...+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368899999999999998887754
No 404
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.26 E-value=0.064 Score=47.02 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+..+++.|+.||||||+...+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999887754
No 405
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.26 E-value=0.11 Score=44.36 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999887755
No 406
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.24 E-value=0.052 Score=46.32 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..+++.|++||||||+...+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999998877644
No 407
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.22 E-value=0.058 Score=46.43 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 22 VVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.+++.|+.||||||++..+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999998887553
No 408
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.20 E-value=0.069 Score=50.14 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+.+...+..+.++++.||+|+|||+++..+....
T Consensus 37 ~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 37 NRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4455666778899999999999999998887755
No 409
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.19 E-value=0.068 Score=44.54 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+++++.|+.||||||+...+.....
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999998876543
No 410
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.19 E-value=0.29 Score=55.53 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=29.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~ 55 (466)
+..|+.++|.||+|+|||+++..++......++...++.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 557889999999999999998888776654433344443
No 411
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.09 E-value=0.056 Score=50.08 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..++.+++.||+|+|||+++..+....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999888765
No 412
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.06 E-value=0.063 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
++++.||+||||+|++..+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999888765
No 413
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=93.06 E-value=0.061 Score=52.64 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=24.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCc
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGY 46 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~ 46 (466)
..++.++|+|||||||||++.++......
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 35788999999999999999998886644
No 414
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.04 E-value=0.061 Score=45.21 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.++|.|++||||||+...+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58889999999999999887755
No 415
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.03 E-value=0.059 Score=47.33 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
....+++.|+.||||||+...+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999887755
No 416
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.97 E-value=0.06 Score=45.82 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 22 VVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.+++.|+.||||||++..+.....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999998877654
No 417
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.97 E-value=0.062 Score=46.30 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=20.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHh
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.+...+++.||.|+|||+++..++..
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 34456899999999999988777654
No 418
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.95 E-value=0.11 Score=51.58 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=21.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~ 42 (466)
+.++.+++|.|+||||||+++..++.
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHHH
Confidence 34578899999999999988887765
No 419
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.93 E-value=0.07 Score=46.29 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=23.3
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
..+..++++|+.||||||++..+.....
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3577899999999999999998876543
No 420
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.88 E-value=0.15 Score=45.19 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=28.8
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCc-EEEEeCch
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-IIGVTQPR 58 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~-~i~~~~p~ 58 (466)
..|..+++.|+.||||||++..+.......+-. .+..-.|.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG 66 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence 467889999999999999998887765443323 33444564
No 421
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.87 E-value=0.067 Score=46.65 Aligned_cols=23 Identities=39% Similarity=0.652 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999886654
No 422
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.84 E-value=0.075 Score=46.37 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.++++|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999887654
No 423
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.84 E-value=0.1 Score=48.16 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+++.||+|+|||+++..+....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999998887755
No 424
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.81 E-value=0.028 Score=49.00 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 22 VVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.+++.|+.||||||++..+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999998877653
No 425
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.80 E-value=0.074 Score=50.21 Aligned_cols=35 Identities=23% Similarity=0.101 Sum_probs=26.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEE
Q 012322 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII 52 (466)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i 52 (466)
.++..+.++|++|+||||++..++......++...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 88 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 45678899999999999999988876654444433
No 426
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.76 E-value=0.065 Score=48.95 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 22 VVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.+++.||+|+||||++..+.....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcChHHHHHHHHHHHcC
Confidence 489999999999999999888653
No 427
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.75 E-value=0.062 Score=52.69 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=30.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHHH
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA 62 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l~ 62 (466)
.+.+++|.|+||||||+.+..++..... .+..+++.-|.....
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~-~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLL-RGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHH-TTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCCchh
Confidence 3568899999999999777655554432 355777788876654
No 428
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.74 E-value=0.09 Score=45.26 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..++++|+.||||||++..+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999887654
No 429
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.74 E-value=0.12 Score=49.16 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+..+++.||+|+|||+++..+....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999998887765
No 430
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.72 E-value=0.72 Score=44.21 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=25.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEE
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~ 54 (466)
...+-.+++.|++|+|||+++..+-.......+..+.+
T Consensus 157 a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v 194 (387)
T 1ny5_A 157 SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVAL 194 (387)
T ss_dssp TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEE
T ss_pred cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEE
Confidence 34556789999999999988776655544434444433
No 431
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.60 E-value=0.032 Score=48.36 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~ 42 (466)
+..+..++++|++|+||||++..+..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45677899999999999999987654
No 432
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.59 E-value=0.063 Score=45.34 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=18.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.+..+++.|+.||||||++..+.....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456889999999999999998876543
No 433
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.56 E-value=0.11 Score=45.88 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=21.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
....|..+++.|+.||||||++..+.....
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999999988876654
No 434
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.50 E-value=0.079 Score=45.23 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.++++|++|+||||++..+....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999988754
No 435
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.43 E-value=0.09 Score=45.31 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..++++|+.||||||+...+....
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999998887654
No 436
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.33 E-value=0.065 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~ 42 (466)
.| .++++|||||||||++.++..
T Consensus 26 ~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CC-eEEEECCCCCChhHHHHHHHH
Confidence 44 789999999999999988876
No 437
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.33 E-value=0.084 Score=45.30 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.++++|++|+||||++..+....
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 46889999999999999988753
No 438
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.31 E-value=0.087 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..+++.|+.||||||++..+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999998887654
No 439
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.26 E-value=0.057 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..++++|++||||||++..+....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999887765
No 440
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.25 E-value=0.11 Score=45.48 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+..+++.|+.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999887755
No 441
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.21 E-value=0.094 Score=44.36 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..++++|+.||||||+...+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999998887754
No 442
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=92.19 E-value=0.077 Score=50.76 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 012322 20 NPVVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~ 42 (466)
....+|+||||+|||+++-++..
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999887765
No 443
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.18 E-value=0.08 Score=50.69 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..++|.||||||||++...++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 467899999999999988777654
No 444
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.12 E-value=0.26 Score=42.65 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchh
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~ 59 (466)
+..+++.|+-||||||++..+...... +...+..-.|..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~~~eP~~ 40 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGG 40 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEESSTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEEeeCCCC
Confidence 456889999999999999888776642 233444456643
No 445
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.07 E-value=0.095 Score=44.55 Aligned_cols=24 Identities=46% Similarity=0.675 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..++++|+.||||||++..+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999998887654
No 446
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.07 E-value=0.42 Score=54.29 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=28.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEe
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~ 55 (466)
-+..+++++|.||+|||||+++.+++...... +..++++
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~-G~~vlYI 68 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFI 68 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC-CCceEEE
Confidence 35668999999999999998888877654433 3344443
No 447
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.01 E-value=0.089 Score=45.21 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 012322 21 PVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
..++|+|++||||||+...+...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46889999999999999988764
No 448
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.01 E-value=0.11 Score=43.03 Aligned_cols=23 Identities=35% Similarity=0.241 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999887654
No 449
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.99 E-value=0.091 Score=45.91 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 012322 20 NPVVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~ 42 (466)
+..++|.|+.||||||++..+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988765
No 450
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.98 E-value=0.12 Score=45.82 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+..+++.|+.||||||++..+....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999887755
No 451
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.95 E-value=0.22 Score=42.85 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCchhHH
Q 012322 23 VVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA 61 (466)
Q Consensus 23 ~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p~~~l 61 (466)
+++.|+-||||||++..+.......+-..+..-.|....
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~ 41 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTE 41 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCc
Confidence 578999999999999988776654434455555675433
No 452
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.94 E-value=0.12 Score=51.25 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+.+...+..+.++++.||+|+|||+++..+....
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 4466677788999999999999999998887755
No 453
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.87 E-value=0.11 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999887754
No 454
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.76 E-value=0.096 Score=47.30 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
...++++|++||||||++..+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999888765
No 455
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.74 E-value=0.23 Score=42.13 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.++++|+.||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999998887754
No 456
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.69 E-value=0.11 Score=45.55 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999887654
No 457
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=91.68 E-value=0.28 Score=39.96 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=44.9
Q ss_pred EcCHHHHHHHHhh------CCCCCCCcEEEecCCCccccCHHHHHHHHHHHHHhhhcCceEEEEeccc
Q 012322 99 YLTDGVLLREILS------NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (466)
Q Consensus 99 ~~T~g~l~~~~~~------~~~l~~~~~iIiDEah~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT~ 160 (466)
-+|.|+.++..++ .....+++++++||+- ..+|......+.+.+......+..+++.|+..
T Consensus 57 ~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 123 (148)
T 1f2t_B 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPT-PYLDEERRRKLITIMERYLKKIPQVILVSHDE 123 (148)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCS-CTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred HCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHccCCEEEEEEChH
Confidence 4789988887543 3455678999999998 78888887776666655444456788888865
No 458
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.65 E-value=0.13 Score=45.41 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=21.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..-.+.|.||+||||||++..+....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999887654
No 459
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.39 E-value=0.11 Score=43.91 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 012322 23 VVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 23 ~ii~apTGsGKTt~~~~~~~~ 43 (466)
++|.|++|||||+++..+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 688999999999999888754
No 460
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.36 E-value=0.17 Score=47.28 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
+..|+.++|.||+|+|||+++..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999998888765
No 461
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=91.35 E-value=1.1 Score=41.42 Aligned_cols=122 Identities=13% Similarity=0.024 Sum_probs=69.3
Q ss_pred HHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEE
Q 012322 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS 279 (466)
Q Consensus 200 ~~~~~~~~~~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilva 279 (466)
.++.++.... +.+.++|||+...+...-+..++... ++...-+-|....+++ +. .+....+.+.
T Consensus 113 ~L~~LL~~l~-~~~~kVLIfsq~t~~LDilE~~l~~~----------~~~y~RlDG~~~~~~~-k~----~~~~~~i~Ll 176 (328)
T 3hgt_A 113 VLRDLINLVQ-EYETETAIVCRPGRTMDLLEALLLGN----------KVHIKRYDGHSIKSAA-AA----NDFSCTVHLF 176 (328)
T ss_dssp HHHHHHHHHT-TSCEEEEEEECSTHHHHHHHHHHTTS----------SCEEEESSSCCC------------CCSEEEEEE
T ss_pred HHHHHHHHHH-hCCCEEEEEECChhHHHHHHHHHhcC----------CCceEeCCCCchhhhh-hc----ccCCceEEEE
Confidence 3444444443 34579999999988888877777654 7778888887443322 11 2345667666
Q ss_pred ecccccccc-----cCCeEEEEeCCcccceeecCCCCccccceeeecHHHHHHhccccC--CCCCCeEEEecCccchhh
Q 012322 280 TNIAETSLT-----VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG--RTRPGKCYRLYPSTVYHD 351 (466)
Q Consensus 280 T~~~~~Gid-----ip~v~~VI~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GRaG--R~~~G~~~~l~~~~~~~~ 351 (466)
|...+-|+| .-..+.||-+|- .|||.. +..+++.|+-|.| +.++-.+|+|.+....++
T Consensus 177 tsag~~gin~~~~nl~~aD~VI~~Ds----dwNp~~----------d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 177 SSEGINFTKYPIKSKARFDMLICLDT----TVDTSQ----------KDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp ESSCCCTTTSCCCCCSCCSEEEECST----TCCTTS----------HHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred ECCCCCCcCcccccCCCCCEEEEECC----CCCCCC----------hHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 877777786 456677775331 122221 1123344555553 235667999998887666
No 462
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.20 E-value=0.15 Score=45.16 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=23.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+..+.|+|++||||||+...+....
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3567789999999999999999887644
No 463
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.16 E-value=0.12 Score=43.26 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=20.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.+..++++|++|+||||++..+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3556899999999999999988764
No 464
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.13 E-value=0.27 Score=42.93 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=27.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCcCCCcEEEEeCc
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~~~~~~~i~~~~p 57 (466)
.|..+++.|+.||||||++..+...... ...+.-.|
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ep 39 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFP 39 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEEec
Confidence 5788999999999999999988876654 23344556
No 465
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.92 E-value=0.14 Score=51.56 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=23.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 19 ~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.+..+++.||+|+||||++..+.....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 478899999999999999998887663
No 466
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.78 E-value=0.14 Score=47.12 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..+++.||+|+|||+++..+....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468889999999999999888766
No 467
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.75 E-value=0.17 Score=43.38 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 012322 21 PVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
-.+.++|+.||||||+...+...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999888764
No 468
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.68 E-value=0.097 Score=48.38 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=28.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcCcC-CCcEEEEeCc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQP 57 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~~~~-~~~~i~~~~p 57 (466)
+..| .+.|.||+|+||||++.+++...... .+.+++++..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 4456 78999999999999888777655432 2455665543
No 469
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.65 E-value=0.29 Score=45.97 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=26.4
Q ss_pred HhHHHHHHHH----hcCCE--EEEEcCCCCcHHHHHHHHHHhc
Q 012322 8 QYEETIVETV----EQNPV--VVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 8 ~~q~~i~~~i----~~~~~--~ii~apTGsGKTt~~~~~~~~~ 44 (466)
..-+.++..+ ..|+. +++.|+.|+||||++..+....
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444555554 36665 8999999999999888776543
No 470
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.50 E-value=0.17 Score=41.86 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012322 22 VVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.++++|++|+||||++..+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988763
No 471
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.34 E-value=0.45 Score=50.01 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 21 PVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+-+++.||.|+|||.++.+++...
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh
Confidence 457899999999999998888865
No 472
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.34 E-value=0.11 Score=46.99 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+++.||+|+|||+++..+....
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4458899999999999998887754
No 473
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.32 E-value=0.19 Score=40.96 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012322 22 VVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.+++.|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4788999999999999988763
No 474
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.29 E-value=0.12 Score=47.70 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012322 22 VVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.++++||+|+||||++..++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3588999999999999998764
No 475
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.20 E-value=0.19 Score=41.04 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012322 22 VVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.+++.|++|+||||++..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 476
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.15 E-value=0.16 Score=49.14 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 012322 23 VVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 23 ~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
++++|++|+||||++..+++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 68999999999999999987654
No 477
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.07 E-value=0.2 Score=41.13 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012322 22 VVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.++++|++|+||||++..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4788999999999999988763
No 478
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.07 E-value=0.21 Score=44.30 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 22 VVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.++++|++|+||||++..++....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 578999999999999999887443
No 479
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.04 E-value=0.2 Score=42.46 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.++++|++|+||||++..+....
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999887743
No 480
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.04 E-value=0.2 Score=43.17 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.+.|.|+.||||||+...+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999999887754
No 481
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.89 E-value=0.21 Score=44.68 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 22 VVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.++|.|+.||||||+...+.....
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999988776543
No 482
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.76 E-value=0.21 Score=47.77 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
...+++.||+|+|||+++..+....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 5578999999999999998887765
No 483
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=89.75 E-value=0.33 Score=47.89 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=24.9
Q ss_pred HHHHH--hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 13 IVETV--EQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 13 i~~~i--~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+++.+ ....++++.||+|+|||+++..+....
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44444 345688999999999999998887764
No 484
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.74 E-value=0.22 Score=40.91 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.++++|++|+|||+++..+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47889999999999999887643
No 485
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.72 E-value=0.2 Score=42.20 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 012322 22 VVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~ 42 (466)
.++++|++|+||||++..+..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998876
No 486
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.64 E-value=0.16 Score=47.03 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
+..+..+++.||+|+|||+++.+++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 345677899999999999998888764
No 487
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=89.64 E-value=1.6 Score=41.46 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=22.2
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
.......+++.|++|+||++++..+-....
T Consensus 148 ~a~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 148 IAKSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp HHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 334556789999999999988776655443
No 488
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.57 E-value=0.14 Score=48.64 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=26.4
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
++-.+..|+.+.|.||+|+||||++..+....
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 44456789999999999999999988777654
No 489
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.51 E-value=0.2 Score=46.07 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 012322 21 PVVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~~ 43 (466)
..+++.|++||||||++..+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36789999999999999888763
No 490
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.50 E-value=0.22 Score=44.17 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 20 ~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..+++.|+.||||||++..+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4568899999999999999887765
No 491
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=89.50 E-value=0.24 Score=48.71 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=25.1
Q ss_pred HHHHHhcC----CEEEEEcCCCCcHHHHHHHHHHhcC
Q 012322 13 IVETVEQN----PVVVVIGETGSGKSTQLSQILHRHG 45 (466)
Q Consensus 13 i~~~i~~~----~~~ii~apTGsGKTt~~~~~~~~~~ 45 (466)
+++.+..+ +.+++.||+|+|||+++..+.....
T Consensus 52 ~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 52 IVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 34444443 5799999999999999988877653
No 492
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.49 E-value=0.24 Score=40.73 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 012322 22 VVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
.++++|++|+|||+++..+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47889999999999999887643
No 493
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.49 E-value=0.23 Score=40.82 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012322 22 VVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.++++|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4788999999999999988763
No 494
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.46 E-value=0.24 Score=41.28 Aligned_cols=22 Identities=23% Similarity=0.673 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012322 22 VVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.++++|++|+|||+++..+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999988764
No 495
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.45 E-value=0.24 Score=40.44 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012322 22 VVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.++++|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999888763
No 496
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.31 E-value=0.25 Score=40.44 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012322 22 VVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.++++|++|+||||++..+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999988763
No 497
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.20 E-value=0.25 Score=52.30 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=24.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 012322 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (466)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~~~~~~~~~ 44 (466)
+..++.++++||+||||||++..+....
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3457889999999999999999988754
No 498
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.16 E-value=0.26 Score=40.91 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012322 22 VVVVIGETGSGKSTQLSQILHR 43 (466)
Q Consensus 22 ~~ii~apTGsGKTt~~~~~~~~ 43 (466)
.++++|++|+|||+++..+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988763
No 499
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.06 E-value=0.22 Score=42.27 Aligned_cols=22 Identities=23% Similarity=0.597 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 012322 21 PVVVVIGETGSGKSTQLSQILH 42 (466)
Q Consensus 21 ~~~ii~apTGsGKTt~~~~~~~ 42 (466)
-.++++|++|+||||++..++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998875
No 500
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.03 E-value=0.32 Score=53.67 Aligned_cols=79 Identities=8% Similarity=0.123 Sum_probs=65.1
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHhhhhccCCCCCCeEEEeecCCCCHHHHhcccCCCCCCcceEEEEec-ccccccccC
Q 012322 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN-IAETSLTVD 290 (466)
Q Consensus 212 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~-~~~~Gidip 290 (466)
.+.+++|.+||+.-+++.++.+.+.+.. .+..+..+++..+..++....+...+|..+|+|+|. .+...+.+.
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~------~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~ 724 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN------WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 724 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT------TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc------CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccc
Confidence 3468999999999999999999887543 256788899999999988888888889999999994 556668888
Q ss_pred CeEEEE
Q 012322 291 GVVYVI 296 (466)
Q Consensus 291 ~v~~VI 296 (466)
++.+||
T Consensus 725 ~l~lvI 730 (1151)
T 2eyq_A 725 DLGLLI 730 (1151)
T ss_dssp SEEEEE
T ss_pred ccceEE
Confidence 888765
Done!