Query 012324
Match_columns 466
No_of_seqs 230 out of 2608
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 01:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3E-52 6.6E-57 432.6 11.8 359 1-367 261-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.8E-49 8.2E-54 430.3 35.0 417 1-422 296-722 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.9 7.5E-29 1.6E-33 233.1 3.8 173 1-173 101-284 (287)
4 PLN00113 leucine-rich repeat r 99.7 7.2E-18 1.6E-22 184.6 11.7 165 259-423 88-255 (968)
5 PLN00113 leucine-rich repeat r 99.7 5.4E-17 1.2E-21 177.7 10.3 169 259-427 183-355 (968)
6 KOG0617 Ras suppressor protein 99.6 3E-17 6.6E-22 133.0 -5.4 163 259-425 28-193 (264)
7 KOG0444 Cytoskeletal regulator 99.6 3.6E-16 7.8E-21 150.3 -0.9 86 257-344 96-184 (1255)
8 KOG0444 Cytoskeletal regulator 99.5 1.3E-15 2.8E-20 146.5 -1.6 169 253-423 211-381 (1255)
9 PLN03210 Resistant to P. syrin 99.5 1.3E-12 2.8E-17 144.1 16.9 175 262-438 609-843 (1153)
10 KOG4194 Membrane glycoprotein 99.4 1.1E-14 2.5E-19 139.1 -2.0 184 255-438 212-399 (873)
11 KOG0617 Ras suppressor protein 99.4 6.9E-15 1.5E-19 119.4 -4.1 150 284-435 29-180 (264)
12 KOG4194 Membrane glycoprotein 99.4 1.5E-13 3.2E-18 131.6 1.7 167 259-425 264-437 (873)
13 KOG0472 Leucine-rich repeat pr 99.3 2.3E-14 5E-19 131.2 -7.5 166 257-427 130-297 (565)
14 KOG0472 Leucine-rich repeat pr 99.2 3.2E-13 7E-18 123.8 -7.1 175 257-436 107-283 (565)
15 PRK15370 E3 ubiquitin-protein 99.1 1.6E-10 3.5E-15 119.9 9.9 165 264-446 199-382 (754)
16 KOG0532 Leucine-rich repeat (L 99.1 1.3E-12 2.7E-17 125.0 -6.1 158 260-423 94-252 (722)
17 PRK15370 E3 ubiquitin-protein 99.1 1.3E-10 2.9E-15 120.6 8.1 116 289-415 263-378 (754)
18 PRK15387 E3 ubiquitin-protein 99.0 3.4E-10 7.4E-15 117.0 7.8 122 289-423 343-464 (788)
19 cd00116 LRR_RI Leucine-rich re 98.9 1E-10 2.2E-15 111.7 -0.5 158 260-417 77-263 (319)
20 PLN03150 hypothetical protein; 98.9 3.5E-09 7.6E-14 109.3 9.0 110 312-421 420-532 (623)
21 KOG0618 Serine/threonine phosp 98.9 3.9E-11 8.5E-16 121.1 -5.8 162 258-421 258-446 (1081)
22 cd00116 LRR_RI Leucine-rich re 98.9 5.2E-10 1.1E-14 106.8 2.0 159 260-418 47-235 (319)
23 KOG0532 Leucine-rich repeat (L 98.9 5.3E-11 1.1E-15 114.1 -5.3 167 261-434 72-240 (722)
24 PRK15387 E3 ubiquitin-protein 98.9 8.5E-09 1.9E-13 106.8 9.7 61 358-426 383-443 (788)
25 PF14580 LRR_9: Leucine-rich r 98.9 7.3E-10 1.6E-14 94.0 1.4 119 315-438 24-147 (175)
26 KOG4237 Extracellular matrix p 98.8 2.1E-10 4.5E-15 105.4 -2.4 172 254-425 81-343 (498)
27 KOG0618 Serine/threonine phosp 98.8 4.1E-11 9E-16 120.9 -7.8 171 264-441 241-440 (1081)
28 PF14580 LRR_9: Leucine-rich r 98.8 3.6E-09 7.8E-14 89.8 4.5 124 286-412 17-148 (175)
29 KOG3207 Beta-tubulin folding c 98.7 2.1E-09 4.5E-14 100.3 0.4 157 259-416 141-313 (505)
30 PLN03150 hypothetical protein; 98.7 2.4E-08 5.3E-13 103.2 7.9 106 266-392 420-526 (623)
31 COG4886 Leucine-rich repeat (L 98.7 1.1E-08 2.3E-13 100.8 4.7 159 260-422 135-295 (394)
32 KOG1259 Nischarin, modulator o 98.7 1.6E-09 3.4E-14 96.3 -1.6 107 311-422 308-416 (490)
33 COG4886 Leucine-rich repeat (L 98.6 3.2E-08 6.9E-13 97.4 5.0 159 260-422 112-272 (394)
34 KOG3207 Beta-tubulin folding c 98.5 2E-08 4.2E-13 93.9 -1.4 190 260-450 117-320 (505)
35 PF13855 LRR_8: Leucine rich r 98.4 1.8E-07 4E-12 65.0 3.4 59 357-415 1-60 (61)
36 KOG4658 Apoptotic ATPase [Sign 98.4 2.3E-07 5E-12 98.3 3.5 151 261-414 520-678 (889)
37 PRK04841 transcriptional regul 98.3 7.8E-06 1.7E-10 89.6 13.8 198 2-208 122-333 (903)
38 PF13855 LRR_8: Leucine rich r 98.3 6.2E-07 1.3E-11 62.3 3.3 58 311-368 2-60 (61)
39 KOG1259 Nischarin, modulator o 98.2 4.3E-07 9.4E-12 81.1 1.6 182 260-448 210-416 (490)
40 KOG1859 Leucine-rich repeat pr 98.2 1.1E-07 2.4E-12 94.3 -3.4 125 311-441 165-289 (1096)
41 KOG4237 Extracellular matrix p 98.2 2.3E-07 5E-12 85.8 -1.2 136 301-439 58-196 (498)
42 KOG2120 SCF ubiquitin ligase, 98.1 8.9E-08 1.9E-12 85.3 -4.9 155 261-438 207-370 (419)
43 KOG0531 Protein phosphatase 1, 98.1 7E-07 1.5E-11 88.2 0.3 151 260-415 91-266 (414)
44 PRK15386 type III secretion pr 98.1 1.5E-05 3.4E-10 76.2 8.8 62 263-328 51-113 (426)
45 PRK15386 type III secretion pr 98.0 1.6E-05 3.5E-10 76.1 7.1 119 284-414 48-187 (426)
46 KOG2982 Uncharacterized conser 97.9 6.5E-06 1.4E-10 73.7 3.5 179 261-439 68-287 (418)
47 KOG1909 Ran GTPase-activating 97.9 2.9E-06 6.2E-11 77.5 0.2 157 260-416 88-282 (382)
48 PF12799 LRR_4: Leucine Rich r 97.8 2.6E-05 5.7E-10 49.7 3.6 36 381-416 1-36 (44)
49 KOG0531 Protein phosphatase 1, 97.8 3.4E-06 7.3E-11 83.4 -1.6 128 262-394 70-199 (414)
50 KOG1909 Ran GTPase-activating 97.6 1E-05 2.2E-10 74.1 -0.3 157 260-416 116-310 (382)
51 PF12799 LRR_4: Leucine Rich r 97.6 7.5E-05 1.6E-09 47.6 3.8 40 357-397 1-40 (44)
52 KOG3665 ZYG-1-like serine/thre 97.6 2.1E-05 4.5E-10 81.6 1.7 150 264-414 122-285 (699)
53 KOG1644 U2-associated snRNP A' 97.5 0.00018 4E-09 61.0 5.8 122 290-413 21-149 (233)
54 KOG4579 Leucine-rich repeat (L 97.4 1.3E-05 2.8E-10 63.5 -2.6 83 313-397 56-139 (177)
55 KOG3665 ZYG-1-like serine/thre 97.3 0.00013 2.8E-09 75.8 2.7 130 287-418 121-264 (699)
56 KOG1859 Leucine-rich repeat pr 97.3 6.6E-06 1.4E-10 82.1 -6.6 123 265-415 165-290 (1096)
57 KOG4579 Leucine-rich repeat (L 97.3 1.7E-05 3.6E-10 62.9 -3.1 110 311-423 28-141 (177)
58 KOG1644 U2-associated snRNP A' 97.2 0.00067 1.5E-08 57.7 5.3 105 287-392 41-151 (233)
59 PRK06893 DNA replication initi 96.6 0.0035 7.5E-08 56.5 5.6 89 4-94 94-197 (229)
60 PF05729 NACHT: NACHT domain 96.6 0.0052 1.1E-07 52.1 6.5 69 1-69 81-163 (166)
61 COG5238 RNA1 Ran GTPase-activa 96.6 0.00086 1.9E-08 59.7 1.5 156 260-417 54-255 (388)
62 KOG2739 Leucine-rich acidic nu 96.5 0.0021 4.5E-08 57.1 3.2 83 331-413 63-152 (260)
63 KOG2120 SCF ubiquitin ligase, 96.3 0.00031 6.6E-09 63.3 -3.1 131 258-390 228-372 (419)
64 KOG2123 Uncharacterized conser 96.3 0.00018 3.9E-09 64.1 -4.7 99 263-363 18-123 (388)
65 KOG2739 Leucine-rich acidic nu 96.2 0.0028 6.1E-08 56.3 2.4 89 328-418 38-130 (260)
66 KOG2123 Uncharacterized conser 96.0 0.00028 6E-09 62.9 -5.1 88 332-423 18-107 (388)
67 COG5238 RNA1 Ran GTPase-activa 95.9 0.0037 7.9E-08 55.8 1.7 159 260-419 88-287 (388)
68 PRK00080 ruvB Holliday junctio 95.8 0.0084 1.8E-07 57.3 3.6 154 29-189 151-311 (328)
69 COG2909 MalT ATP-dependent tra 95.7 0.061 1.3E-06 55.8 9.3 197 2-210 130-341 (894)
70 PF01637 Arch_ATPase: Archaeal 95.4 0.052 1.1E-06 48.8 7.4 95 2-98 119-232 (234)
71 TIGR00635 ruvB Holliday juncti 95.4 0.034 7.3E-07 52.6 6.2 154 29-191 130-292 (305)
72 KOG2982 Uncharacterized conser 95.4 0.0063 1.4E-07 55.1 1.1 113 310-422 71-200 (418)
73 PF00560 LRR_1: Leucine Rich R 95.3 0.0078 1.7E-07 31.8 0.9 19 383-401 2-20 (22)
74 TIGR03015 pepcterm_ATPase puta 95.1 0.3 6.4E-06 45.2 11.3 103 1-104 123-242 (269)
75 PF13306 LRR_5: Leucine rich r 94.9 0.13 2.8E-06 41.3 7.5 37 260-297 8-44 (129)
76 PF00560 LRR_1: Leucine Rich R 94.7 0.014 3.1E-07 30.7 0.9 17 313-329 3-19 (22)
77 PF13306 LRR_5: Leucine rich r 94.3 0.15 3.2E-06 41.0 6.5 96 329-433 31-128 (129)
78 PF13504 LRR_7: Leucine rich r 93.5 0.051 1.1E-06 26.5 1.4 13 383-395 3-15 (17)
79 COG3903 Predicted ATPase [Gene 93.3 0.03 6.6E-07 53.3 0.8 204 1-209 88-316 (414)
80 PRK09087 hypothetical protein; 93.3 0.36 7.8E-06 43.3 7.6 91 4-98 90-193 (226)
81 COG3899 Predicted ATPase [Gene 92.0 0.59 1.3E-05 50.6 8.3 118 47-167 210-335 (849)
82 TIGR03420 DnaA_homol_Hda DnaA 91.8 0.43 9.3E-06 42.7 6.2 95 4-100 93-201 (226)
83 KOG1947 Leucine rich repeat pr 91.4 0.037 7.9E-07 55.9 -1.4 126 286-411 186-328 (482)
84 PRK08727 hypothetical protein; 91.3 0.73 1.6E-05 41.6 7.1 90 3-94 95-198 (233)
85 PF13173 AAA_14: AAA domain 90.8 0.39 8.5E-06 38.7 4.4 60 2-61 62-127 (128)
86 TIGR00678 holB DNA polymerase 90.6 2.2 4.8E-05 36.9 9.3 87 2-96 97-187 (188)
87 PRK06620 hypothetical protein; 90.0 1.9 4.1E-05 38.3 8.4 84 4-92 88-181 (214)
88 PRK05564 DNA polymerase III su 89.9 1.7 3.7E-05 41.2 8.6 89 4-98 96-188 (313)
89 PRK08084 DNA replication initi 89.8 1.2 2.6E-05 40.2 7.2 89 4-94 100-203 (235)
90 smart00370 LRR Leucine-rich re 89.4 0.35 7.5E-06 26.5 2.1 20 380-399 1-20 (26)
91 smart00369 LRR_TYP Leucine-ric 89.4 0.35 7.5E-06 26.5 2.1 20 380-399 1-20 (26)
92 KOG1947 Leucine rich repeat pr 88.7 0.096 2.1E-06 52.8 -0.9 156 263-418 187-365 (482)
93 PRK07471 DNA polymerase III su 87.9 6.9 0.00015 37.9 11.2 92 3-100 143-238 (365)
94 KOG4341 F-box protein containi 87.7 0.25 5.5E-06 47.2 1.2 105 330-435 343-456 (483)
95 PRK05642 DNA replication initi 87.7 2.1 4.6E-05 38.6 7.2 89 4-94 100-202 (234)
96 PRK13342 recombination factor 86.3 2.9 6.3E-05 41.4 7.9 97 1-100 92-196 (413)
97 PRK06645 DNA polymerase III su 85.0 5.9 0.00013 40.2 9.4 94 2-97 129-226 (507)
98 PRK00411 cdc6 cell division co 84.3 14 0.0003 36.2 11.7 141 2-150 139-306 (394)
99 PRK14961 DNA polymerase III su 84.0 6.4 0.00014 38.2 9.0 93 3-97 121-217 (363)
100 PF00308 Bac_DnaA: Bacterial d 83.9 2.5 5.4E-05 37.7 5.6 85 4-92 100-200 (219)
101 PRK14963 DNA polymerase III su 83.2 7 0.00015 39.7 9.1 94 2-97 117-214 (504)
102 PRK09112 DNA polymerase III su 82.7 5.7 0.00012 38.3 7.8 96 2-101 142-241 (351)
103 TIGR02397 dnaX_nterm DNA polym 82.1 9.8 0.00021 36.6 9.5 95 3-99 119-217 (355)
104 PRK07003 DNA polymerase III su 81.6 17 0.00036 38.6 11.0 90 4-95 122-215 (830)
105 PRK12402 replication factor C 81.2 7.4 0.00016 37.1 8.3 92 4-97 128-223 (337)
106 KOG3864 Uncharacterized conser 79.8 0.15 3.2E-06 43.8 -3.4 35 265-299 102-136 (221)
107 PLN03025 replication factor C 79.5 8.7 0.00019 36.5 8.0 90 3-94 101-194 (319)
108 PRK14087 dnaA chromosomal repl 79.2 4.6 9.9E-05 40.4 6.1 95 4-98 209-317 (450)
109 KOG4308 LRR-containing protein 78.4 0.027 5.8E-07 56.3 -9.8 157 260-416 111-302 (478)
110 PRK00440 rfc replication facto 76.9 14 0.00031 34.8 8.7 92 3-96 104-199 (319)
111 KOG4341 F-box protein containi 76.5 1.7 3.6E-05 41.9 2.0 150 263-412 293-460 (483)
112 PRK08903 DnaA regulatory inact 76.4 9.9 0.00022 33.9 7.0 97 4-102 93-201 (227)
113 KOG0473 Leucine-rich repeat pr 76.1 0.076 1.6E-06 46.6 -6.3 81 311-393 43-123 (326)
114 COG1373 Predicted ATPase (AAA+ 75.5 8.1 0.00017 38.0 6.6 64 1-65 94-163 (398)
115 smart00364 LRR_BAC Leucine-ric 73.8 2.2 4.7E-05 23.4 1.2 17 382-398 3-19 (26)
116 KOG3864 Uncharacterized conser 73.5 0.63 1.4E-05 40.1 -1.4 77 313-389 104-184 (221)
117 KOG0473 Leucine-rich repeat pr 71.2 0.13 2.9E-06 45.1 -6.0 87 259-369 37-123 (326)
118 PRK06090 DNA polymerase III su 71.0 30 0.00064 32.8 8.9 87 4-100 111-201 (319)
119 PRK14970 DNA polymerase III su 70.1 23 0.00049 34.4 8.4 92 2-95 109-204 (367)
120 smart00365 LRR_SD22 Leucine-ri 69.8 4.1 8.9E-05 22.4 1.8 16 381-396 2-17 (26)
121 PF13516 LRR_6: Leucine Rich r 68.6 2.2 4.8E-05 22.6 0.6 14 381-394 2-15 (24)
122 PRK14955 DNA polymerase III su 68.4 14 0.00031 36.2 6.6 94 2-97 128-225 (397)
123 PRK14971 DNA polymerase III su 67.6 29 0.00062 36.3 8.8 91 4-96 124-218 (614)
124 PRK13341 recombination factor 67.3 27 0.00059 37.2 8.6 89 2-93 110-210 (725)
125 PRK14957 DNA polymerase III su 66.9 35 0.00077 35.0 9.1 92 2-95 120-215 (546)
126 PRK14086 dnaA chromosomal repl 65.9 22 0.00048 36.8 7.4 84 4-91 380-479 (617)
127 PRK07940 DNA polymerase III su 65.9 27 0.00059 34.2 7.8 89 3-98 119-211 (394)
128 PRK14951 DNA polymerase III su 65.8 39 0.00085 35.2 9.3 92 4-97 127-222 (618)
129 PRK05707 DNA polymerase III su 65.7 22 0.00048 33.9 7.0 91 4-100 109-203 (328)
130 PRK12323 DNA polymerase III su 65.6 19 0.00041 37.5 6.8 96 3-100 126-225 (700)
131 PRK09111 DNA polymerase III su 65.0 1E+02 0.0022 32.2 12.1 94 3-98 134-231 (598)
132 TIGR00362 DnaA chromosomal rep 63.5 25 0.00054 34.7 7.3 89 4-94 202-304 (405)
133 PRK14959 DNA polymerase III su 62.7 41 0.0009 35.0 8.7 98 2-101 120-222 (624)
134 PRK06305 DNA polymerase III su 62.3 42 0.0009 33.7 8.6 92 2-95 122-217 (451)
135 KOG0989 Replication factor C, 61.9 23 0.0005 33.0 6.0 88 4-93 132-223 (346)
136 PRK12422 chromosomal replicati 61.6 40 0.00086 33.7 8.2 67 4-70 205-285 (445)
137 PRK14960 DNA polymerase III su 61.1 40 0.00086 35.3 8.2 94 3-98 120-217 (702)
138 PRK07764 DNA polymerase III su 60.5 1.6E+02 0.0034 32.2 12.8 91 4-96 123-217 (824)
139 PRK14962 DNA polymerase III su 60.0 59 0.0013 32.8 9.2 97 2-101 118-220 (472)
140 PRK14964 DNA polymerase III su 59.9 54 0.0012 33.2 8.8 92 3-96 118-213 (491)
141 TIGR02928 orc1/cdc6 family rep 59.8 66 0.0014 31.0 9.4 96 2-97 130-243 (365)
142 PRK14956 DNA polymerase III su 59.0 51 0.0011 33.2 8.3 93 3-97 123-219 (484)
143 PRK08451 DNA polymerase III su 58.8 67 0.0014 32.9 9.3 94 3-98 119-216 (535)
144 PRK04195 replication factor C 58.7 71 0.0015 32.4 9.7 93 2-98 99-200 (482)
145 PF02463 SMC_N: RecF/RecN/SMC 57.9 13 0.00027 33.0 3.8 43 4-46 161-206 (220)
146 PRK00149 dnaA chromosomal repl 57.6 26 0.00055 35.2 6.2 88 4-95 214-317 (450)
147 PRK08691 DNA polymerase III su 57.4 30 0.00065 36.4 6.7 95 2-98 120-218 (709)
148 TIGR02903 spore_lon_C ATP-depe 56.8 26 0.00056 36.7 6.3 69 2-70 293-367 (615)
149 COG0593 DnaA ATPase involved i 56.6 48 0.001 32.5 7.6 66 4-71 178-259 (408)
150 COG2256 MGS1 ATPase related to 56.2 41 0.00089 32.7 6.8 92 1-95 104-207 (436)
151 PRK14950 DNA polymerase III su 55.6 64 0.0014 33.6 8.9 96 2-99 121-220 (585)
152 PRK14954 DNA polymerase III su 55.0 66 0.0014 33.7 8.8 90 3-95 129-223 (620)
153 PRK14969 DNA polymerase III su 54.7 49 0.0011 33.9 7.7 93 2-96 120-216 (527)
154 cd00561 CobA_CobO_BtuR ATP:cor 54.6 20 0.00042 30.1 4.0 37 4-40 98-139 (159)
155 PRK14949 DNA polymerase III su 54.4 66 0.0014 35.1 8.7 97 2-100 120-220 (944)
156 PRK08769 DNA polymerase III su 53.5 49 0.0011 31.4 7.0 89 4-100 116-208 (319)
157 PRK14088 dnaA chromosomal repl 53.3 49 0.0011 33.0 7.3 85 4-92 197-297 (440)
158 smart00367 LRR_CC Leucine-rich 53.1 9.6 0.00021 20.7 1.4 15 404-418 2-16 (26)
159 TIGR02880 cbbX_cfxQ probable R 51.6 42 0.0009 31.3 6.2 67 3-69 123-208 (284)
160 PRK06964 DNA polymerase III su 50.2 53 0.0011 31.5 6.7 87 4-100 135-225 (342)
161 TIGR01242 26Sp45 26S proteasom 50.0 75 0.0016 30.8 8.0 63 28-94 260-328 (364)
162 PRK14953 DNA polymerase III su 49.8 2.1E+02 0.0046 29.0 11.3 95 2-98 120-218 (486)
163 PRK07994 DNA polymerase III su 49.3 75 0.0016 33.4 8.1 96 3-100 121-220 (647)
164 PRK14952 DNA polymerase III su 48.5 1.3E+02 0.0027 31.4 9.5 90 4-95 121-214 (584)
165 PRK07133 DNA polymerase III su 47.4 97 0.0021 33.0 8.6 93 3-97 120-216 (725)
166 PF06144 DNA_pol3_delta: DNA p 45.1 1.1E+02 0.0024 25.5 7.5 92 3-96 59-162 (172)
167 PRK05896 DNA polymerase III su 44.4 85 0.0018 32.6 7.5 89 4-95 122-215 (605)
168 PF14516 AAA_35: AAA-like doma 44.3 36 0.00079 32.5 4.7 54 48-107 193-246 (331)
169 PRK06647 DNA polymerase III su 44.2 1.4E+02 0.003 30.9 9.1 94 3-98 121-218 (563)
170 PRK04132 replication factor C 43.6 1.4E+02 0.003 32.6 9.2 94 3-98 632-729 (846)
171 KOG0741 AAA+-type ATPase [Post 43.2 34 0.00074 34.5 4.2 83 4-90 601-704 (744)
172 PRK06871 DNA polymerase III su 42.4 1.2E+02 0.0026 28.8 7.8 86 4-96 110-199 (325)
173 PRK14948 DNA polymerase III su 41.5 1.4E+02 0.0031 31.3 8.8 93 3-98 123-220 (620)
174 smart00368 LRR_RI Leucine rich 41.3 23 0.00049 19.7 1.7 14 381-394 2-15 (28)
175 TIGR02881 spore_V_K stage V sp 40.9 1.2E+02 0.0025 27.8 7.3 66 4-71 108-193 (261)
176 TIGR01128 holA DNA polymerase 39.6 2.7E+02 0.0058 25.8 9.9 92 2-96 47-149 (302)
177 KOG3763 mRNA export factor TAP 39.6 8.9 0.00019 38.5 -0.3 15 406-420 272-286 (585)
178 CHL00181 cbbX CbbX; Provisiona 38.8 2.1E+02 0.0047 26.6 8.8 67 4-70 125-210 (287)
179 PRK14958 DNA polymerase III su 38.0 1.3E+02 0.0028 30.7 7.7 94 3-98 121-218 (509)
180 PRK07399 DNA polymerase III su 37.1 1.3E+02 0.0027 28.6 7.0 90 3-98 126-219 (314)
181 cd00009 AAA The AAA+ (ATPases 36.6 50 0.0011 26.2 3.9 39 2-40 85-131 (151)
182 PF13177 DNA_pol3_delta2: DNA 34.7 61 0.0013 27.2 4.1 54 4-57 105-162 (162)
183 PRK05563 DNA polymerase III su 34.4 2.7E+02 0.0058 28.9 9.4 93 2-96 120-216 (559)
184 KOG4308 LRR-containing protein 30.9 2.1 4.4E-05 43.1 -6.3 129 288-416 87-245 (478)
185 PRK08058 DNA polymerase III su 30.1 2.5E+02 0.0055 26.7 8.0 65 4-68 113-181 (329)
186 PRK07452 DNA polymerase III su 29.7 2.9E+02 0.0064 26.0 8.4 93 3-97 63-169 (326)
187 PRK14700 recombination factor 29.6 1.5E+02 0.0032 27.8 5.9 70 24-93 2-80 (300)
188 PRK14965 DNA polymerase III su 27.2 2.6E+02 0.0056 29.1 8.0 89 4-94 122-214 (576)
189 PRK07132 DNA polymerase III su 26.7 2.7E+02 0.0057 26.2 7.2 65 4-68 93-161 (299)
190 PHA02544 44 clamp loader, smal 26.2 1.9E+02 0.0042 27.1 6.5 65 3-67 102-171 (316)
191 PF10236 DAP3: Mitochondrial r 25.1 1.7E+02 0.0038 27.5 5.8 46 50-95 258-304 (309)
192 PRK07993 DNA polymerase III su 24.7 2.2E+02 0.0048 27.2 6.4 87 4-97 111-201 (334)
193 PF05496 RuvB_N: Holliday junc 23.1 2.2E+02 0.0047 25.6 5.5 92 3-96 103-217 (233)
194 TIGR00708 cobA cob(I)alamin ad 22.9 1.2E+02 0.0026 25.8 3.8 37 4-40 100-141 (173)
195 PF10443 RNA12: RNA12 protein; 22.9 5.5E+02 0.012 25.5 8.7 100 3-106 150-284 (431)
196 PF07328 VirD1: T-DNA border e 22.7 1E+02 0.0022 24.6 2.9 88 28-117 23-110 (147)
197 PF02562 PhoH: PhoH-like prote 21.7 1.1E+02 0.0023 27.0 3.4 35 2-39 120-156 (205)
198 PRK05986 cob(I)alamin adenolsy 21.4 1.3E+02 0.0029 26.0 3.8 36 4-39 118-158 (191)
199 KOG3763 mRNA export factor TAP 20.9 57 0.0012 33.0 1.6 62 286-348 216-285 (585)
200 KOG2035 Replication factor C, 20.7 4.7E+02 0.01 24.4 7.1 87 50-138 180-282 (351)
201 PF07693 KAP_NTPase: KAP famil 20.3 2.9E+02 0.0063 25.9 6.4 43 1-45 172-220 (325)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3e-52 Score=432.57 Aligned_cols=359 Identities=28% Similarity=0.367 Sum_probs=273.0
Q ss_pred CeEEEEEeCCCChHhHHHHHhcCCCCCCCcEEEEEeCChhhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCC-CCCch
Q 012324 1 MKVLIVFDDVTCFSQLESIIRSLDWLTPVSRIIITTRNKQVLRN-WGVRKIYEIEALENHHALELFSRHAFKRN-HPDVG 78 (466)
Q Consensus 1 kr~LlvlDd~~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~ 78 (466)
|||+|||||||+..+|+.++.++|....||||++|||+++||.. |++.+.++++.|+.+|||+||.+.||... ...+.
T Consensus 261 krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~ 340 (889)
T KOG4658|consen 261 KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPD 340 (889)
T ss_pred CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccccc
Confidence 79999999999999999999999999999999999999999999 88888999999999999999999998763 34456
Q ss_pred HHHHHHHHHHHhCCCceeehhhhhhcccC-CHHHHHHHHHHHHhc-------cchhHHHHHHHHHhcCchhhhhhhceee
Q 012324 79 YEKLSSKVMKYAQGVPLALKVLGCFLYER-EKEVSESAINKLQRI-------LHPSILEVLKISYDSLDNKEKNIFLDVA 150 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~w~~~~~~l~~~-------~~~~~~~~l~~sy~~L~~~~~~~~~~~~ 150 (466)
++++|++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+... ..+.++.++.+||+.||++.|.||+|||
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLyca 420 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCA 420 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhc
Confidence 89999999999999999999999999987 677999999988665 1467899999999999998999999999
Q ss_pred ccCCCccH--HHHHHHHHhcCCCc------------cchhhhhhcccceEEcC----CCeEEecHHHHHHHHHHHhhhcc
Q 012324 151 CFFQGEDV--NLVMKFLNASGFYP------------EIGISVLVDKSLIAIGS----YNKIRMHDLLQELGREIVRQESI 212 (466)
Q Consensus 151 ~fp~~~~~--~~l~~~~~~~~~~~------------~~~~~~L~~~sl~~~~~----~~~~~~hdlv~~~~~~~~~~~~~ 212 (466)
.||+++++ +.++.+|+|+||+. ..++.+|++++++.... ...|+|||++||+|.+++.+...
T Consensus 421 lFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~ 500 (889)
T KOG4658|consen 421 LFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGK 500 (889)
T ss_pred cCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccc
Confidence 99999765 45999999999873 34499999999998764 37899999999999999985432
Q ss_pred CCCCcccccchh-hHHHHhhhcccchhhhhHHHhhhhhcccCCCCCCCCCCCCCCcEEEcCCCCC-CcccC-cccccCcc
Q 012324 213 NPGNRSRLWHHE-DIYEVLTYNTHYSKLNQIIHTACNKLIAKTPNPMLMPRLNNLVILNLRSGKS-LKSLP-SGIFNLEF 289 (466)
Q Consensus 213 ~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~-~~l~~l~~ 289 (466)
..+. .+.... ...+ .+........++....+... .....-..++.|++|-+.+|.. ...++ ..|..++.
T Consensus 501 ~~e~--~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~-----~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~ 572 (889)
T KOG4658|consen 501 QEEN--QIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKI-----EHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPL 572 (889)
T ss_pred cccc--eEEECCcCccc-cccccchhheeEEEEeccch-----hhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcc
Confidence 2111 110000 0000 00011111222221111110 0011122334677777776642 23333 33556777
Q ss_pred cCEEecCCCCCCCccCCCCCC--cccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCC
Q 012324 290 LTKLDLSGCSKLKRLPEISSG--NVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGC 367 (466)
Q Consensus 290 L~~L~l~~~~~~~~~~~~~~~--~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 367 (466)
|++||+++|.-.+.+|..+.. +|++|+++++.++.+|.+++++..|++|++..+.....+|.....+++|++|.+...
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 777887777777777766553 667777778889999999999999999999887766666665666999999988653
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.8e-49 Score=430.30 Aligned_cols=417 Identities=35% Similarity=0.521 Sum_probs=356.9
Q ss_pred CeEEEEEeCCCChHhHHHHHhcCCCCCCCcEEEEEeCChhhHhhcCcceEEEccCCChhhHHHHHHHhhcCCCCCCchHH
Q 012324 1 MKVLIVFDDVTCFSQLESIIRSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEIEALENHHALELFSRHAFKRNHPDVGYE 80 (466)
Q Consensus 1 kr~LlvlDd~~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~ 80 (466)
||+||||||||+..+|+.+.......++||+||||||++.++..++..++|+++.|+++|||+||.++||+...++.++.
T Consensus 296 krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~ 375 (1153)
T PLN03210 296 RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFM 375 (1153)
T ss_pred CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHH
Confidence 68999999999999999998776666899999999999999988888889999999999999999999998776677789
Q ss_pred HHHHHHHHHhCCCceeehhhhhhcccCCHHHHHHHHHHHHhccchhHHHHHHHHHhcCch-hhhhhhceeeccCCCccHH
Q 012324 81 KLSSKVMKYAQGVPLALKVLGCFLYEREKEVSESAINKLQRILHPSILEVLKISYDSLDN-KEKNIFLDVACFFQGEDVN 159 (466)
Q Consensus 81 ~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~~~l~~sy~~L~~-~~~~~~~~~~~fp~~~~~~ 159 (466)
+++++|+++|+|+|||++++|++|++++..+|++++++++......+..++++||+.|++ ..|.||+++|+|+.+.+++
T Consensus 376 ~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~ 455 (1153)
T PLN03210 376 ELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN 455 (1153)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH
Confidence 999999999999999999999999999999999999999988888899999999999986 5899999999999999888
Q ss_pred HHHHHHHhcCCCccchhhhhhcccceEEcCCCeEEecHHHHHHHHHHHhhhccCCCCcccccchhhHHHHhhhcccchhh
Q 012324 160 LVMKFLNASGFYPEIGISVLVDKSLIAIGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHEDIYEVLTYNTHYSKL 239 (466)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~L~~~sl~~~~~~~~~~~hdlv~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 239 (466)
.+..++...++....+++.|++++|++.. .+.+.|||++|++++++++.+...++.+.++|.+.++.+++....+..++
T Consensus 456 ~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v 534 (1153)
T PLN03210 456 DIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKV 534 (1153)
T ss_pred HHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCccccee
Confidence 87777777777788889999999999886 56899999999999999998887888999999999999998887777665
Q ss_pred hhHHHhhhhhcccCCCCCCCCCCCCCCcEEEcCCCCC------CcccCcccccCc-ccCEEecCCCCCCCccCCC-CCCc
Q 012324 240 NQIIHTACNKLIAKTPNPMLMPRLNNLVILNLRSGKS------LKSLPSGIFNLE-FLTKLDLSGCSKLKRLPEI-SSGN 311 (466)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~------~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~-~~~~ 311 (466)
+.+. +..+...........|.++++|+.|.++.+.. ...+|..+..++ +|+.|.+.++.. ..+|.. ...+
T Consensus 535 ~~i~-l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f~~~~ 612 (1153)
T PLN03210 535 LGIT-LDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNFRPEN 612 (1153)
T ss_pred eEEE-eccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcCCccC
Confidence 5441 11111112223344588899999999976532 234666666664 599999998764 555544 3468
Q ss_pred ccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCC
Q 012324 312 VCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKT 391 (466)
Q Consensus 312 l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 391 (466)
|+.|++.++++..+|.++..+++|++|++++|.....+|. ++.+++|++|++++|.....+|..++++++|+.|++++|
T Consensus 613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 8999999999999999999999999999999887888885 888999999999999999999999999999999999875
Q ss_pred -CccccchhhhccCCCcEeecccCcCCCcCCC
Q 012324 392 -NIERIPESIIQLFVLRYLLLSYSERFQSLPK 422 (466)
Q Consensus 392 -~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~ 422 (466)
++..+|..+ ++++|++|++++|..++.+|.
T Consensus 692 ~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 692 ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred CCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 566888765 789999999999988877775
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.95 E-value=7.5e-29 Score=233.06 Aligned_cols=173 Identities=30% Similarity=0.498 Sum_probs=137.3
Q ss_pred CeEEEEEeCCCChHhHHHHHhcCCCCCCCcEEEEEeCChhhHhhcCc-ceEEEccCCChhhHHHHHHHhhcCCC-CCCch
Q 012324 1 MKVLIVFDDVTCFSQLESIIRSLDWLTPVSRIIITTRNKQVLRNWGV-RKIYEIEALENHHALELFSRHAFKRN-HPDVG 78 (466)
Q Consensus 1 kr~LlvlDd~~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~ 78 (466)
+||||||||||+..+|+.+...++....||+||||||+..++..++. .+.+++++|+.+||++||.+.++... .....
T Consensus 101 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~ 180 (287)
T PF00931_consen 101 KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPED 180 (287)
T ss_dssp TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TT
T ss_pred ccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999998888877889999999999999887654 67999999999999999999997655 33455
Q ss_pred HHHHHHHHHHHhCCCceeehhhhhhcccC-CHHHHHHHHHHHHhcc------chhHHHHHHHHHhcCchhhhhhhceeec
Q 012324 79 YEKLSSKVMKYAQGVPLALKVLGCFLYER-EKEVSESAINKLQRIL------HPSILEVLKISYDSLDNKEKNIFLDVAC 151 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~w~~~~~~l~~~~------~~~~~~~l~~sy~~L~~~~~~~~~~~~~ 151 (466)
.++.+++|+++|+|+|+|++++|++|+.+ +..+|+.+.+++.... ...+..++.+||+.||++.|+||+||++
T Consensus 181 ~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~ 260 (287)
T PF00931_consen 181 LEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSI 260 (287)
T ss_dssp SCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcC
Confidence 57789999999999999999999999654 6788999998876553 4679999999999999999999999999
Q ss_pred cCCCcc--HHHHHHHHHhcCCCcc
Q 012324 152 FFQGED--VNLVMKFLNASGFYPE 173 (466)
Q Consensus 152 fp~~~~--~~~l~~~~~~~~~~~~ 173 (466)
||+++. ...++++|.++|++..
T Consensus 261 f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 261 FPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred CCCCceECHHHHHHHHHHCCCCcc
Confidence 999955 6679999999998764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.74 E-value=7.2e-18 Score=184.57 Aligned_cols=165 Identities=28% Similarity=0.354 Sum_probs=89.1
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccc-cCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCc-ccChhhhccCCCC
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIE-ELPSSIDRLRRLG 336 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~-~lp~~l~~l~~L~ 336 (466)
.+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|.....++++|++++|.+. .+|..++.+++|+
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 345556666666666655555554433 55566666666665555555544455555555555554 4455555555555
Q ss_pred eeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc-ccchhhhccCCCcEeecccCc
Q 012324 337 YLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE-RIPESIIQLFVLRYLLLSYSE 415 (466)
Q Consensus 337 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~ 415 (466)
+|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|+.|++++|++. .+|..++++++|++|++++|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 5555555555555555555555555555555555555555555555555555555554 444455555555555555554
Q ss_pred CCCcCCCC
Q 012324 416 RFQSLPKP 423 (466)
Q Consensus 416 ~~~~~p~~ 423 (466)
+.+.+|..
T Consensus 248 l~~~~p~~ 255 (968)
T PLN00113 248 LTGPIPSS 255 (968)
T ss_pred eccccChh
Confidence 44444443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.69 E-value=5.4e-17 Score=177.71 Aligned_cols=169 Identities=26% Similarity=0.282 Sum_probs=102.2
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCc-ccChhhhccCCC
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIE-ELPSSIDRLRRL 335 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~-~lp~~l~~l~~L 335 (466)
.+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+. .++++|++++|.+. .+|..++++++|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 455555666666655555555555555566666666666555555554332 35566666666554 455566666666
Q ss_pred CeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc-ccchhhhccCCCcEeecccC
Q 012324 336 GYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE-RIPESIIQLFVLRYLLLSYS 414 (466)
Q Consensus 336 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~ 414 (466)
++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+. .+|..+.++++|+.|++++|
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 66666666655556666666666666666666666666666666666666666666665 55556666666666666666
Q ss_pred cCCCcCCCCeEec
Q 012324 415 ERFQSLPKPLFLA 427 (466)
Q Consensus 415 ~~~~~~p~~~~~l 427 (466)
.+.+.+|..+..+
T Consensus 343 ~l~~~~p~~l~~~ 355 (968)
T PLN00113 343 KFSGEIPKNLGKH 355 (968)
T ss_pred CCcCcCChHHhCC
Confidence 6666666554433
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=3e-17 Score=132.97 Aligned_cols=163 Identities=25% Similarity=0.333 Sum_probs=135.0
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCccCcccChhhhccCCCC
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGTAIEELPSSIDRLRRLG 336 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~~i~~lp~~l~~l~~L~ 336 (466)
.+.++.+++.|.++.| ....+|+.+..+++|+.|++.+|++ .++|..+ ...++.|++.-|++..+|.+++.++.|+
T Consensus 28 gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 3566788888999888 4556777788999999999998764 4455433 3577888888899999999999999999
Q ss_pred eeecccccccc-ccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCc
Q 012324 337 YLNLSDCKRLK-SLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSE 415 (466)
Q Consensus 337 ~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~ 415 (466)
.|++++|+... .+|..+.-++.|+.|+++.|. -..+|..++++++|+.|.+..|.+.++|..++.++.|+.|++.+|.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 99999987654 578778888999999998855 4578889999999999999999999999999999999999999887
Q ss_pred CCCcCCCCeE
Q 012324 416 RFQSLPKPLF 425 (466)
Q Consensus 416 ~~~~~p~~~~ 425 (466)
+.-+|.++.
T Consensus 185 -l~vlppel~ 193 (264)
T KOG0617|consen 185 -LTVLPPELA 193 (264)
T ss_pred -eeecChhhh
Confidence 555666544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=3.6e-16 Score=150.28 Aligned_cols=86 Identities=30% Similarity=0.395 Sum_probs=71.0
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcc---cEEeecCccCcccChhhhccC
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNV---CWLFLRGTAIEELPSSIDRLR 333 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l---~~L~l~~~~i~~lp~~l~~l~ 333 (466)
|..+..+..|..|||+.| ...++|..+.+-+++-+|++++|+ +.++|...+-+| -+|++++|++..+|+.+..+.
T Consensus 96 P~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred Cchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 445788999999999998 567788888888999999999876 667887766554 678889999999999888888
Q ss_pred CCCeeeccccc
Q 012324 334 RLGYLNLSDCK 344 (466)
Q Consensus 334 ~L~~L~l~~~~ 344 (466)
+||+|.+++|.
T Consensus 174 ~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 174 MLQTLKLSNNP 184 (1255)
T ss_pred hhhhhhcCCCh
Confidence 88888888776
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.51 E-value=1.3e-15 Score=146.52 Aligned_cols=169 Identities=26% Similarity=0.308 Sum_probs=145.3
Q ss_pred CCCCCCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCC-CCCCcccEEeecCccCcccChhhhc
Q 012324 253 KTPNPMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE-ISSGNVCWLFLRGTAIEELPSSIDR 331 (466)
Q Consensus 253 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~l~~~~i~~lp~~l~~ 331 (466)
....|.++..+.+|+.+|++.| ....+|..+.++++|+.|++++|.+...... ..-.++++|+++.|+++.+|..+++
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcK 289 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCK 289 (1255)
T ss_pred hhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhh
Confidence 3344567888999999999888 5667888899999999999999886543221 2225789999999999999999999
Q ss_pred cCCCCeeecccccccc-ccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEee
Q 012324 332 LRRLGYLNLSDCKRLK-SLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLL 410 (466)
Q Consensus 332 l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~ 410 (466)
+++|+.|.+.+|++.. -+|.+++++.+|..+...+ +...-+|++++.|.+|+.|.|++|.+..+|+.+.-|+.|+.|+
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLD 368 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceee
Confidence 9999999999887654 4799999999999999987 5677899999999999999999999999999999999999999
Q ss_pred cccCcCCCcCCCC
Q 012324 411 LSYSERFQSLPKP 423 (466)
Q Consensus 411 l~~~~~~~~~p~~ 423 (466)
++.|+.+--.|+.
T Consensus 369 lreNpnLVMPPKP 381 (1255)
T KOG0444|consen 369 LRENPNLVMPPKP 381 (1255)
T ss_pred ccCCcCccCCCCc
Confidence 9999988777763
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.46 E-value=1.3e-12 Score=144.14 Aligned_cols=175 Identities=35% Similarity=0.520 Sum_probs=121.3
Q ss_pred CCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC-CCcccEEeecCc-cCcccChhhhccCCCCeee
Q 012324 262 RLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNVCWLFLRGT-AIEELPSSIDRLRRLGYLN 339 (466)
Q Consensus 262 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~l~~L~l~~~-~i~~lp~~l~~l~~L~~L~ 339 (466)
...+|+.|++.++. ...+|..+..+++|++|++++|.....+|... ..+|+.|++++| .+..+|..++.+++|+.|+
T Consensus 609 ~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 609 RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 45778888887774 45677777788888888888887777777533 357788888874 5567888888888888888
Q ss_pred ccccccccccccccCCCCCCCEEEecCCCCCCCCCcccC-----------------------------------------
Q 012324 340 LSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLG----------------------------------------- 378 (466)
Q Consensus 340 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~----------------------------------------- 378 (466)
+++|...+.+|..+ ++++|+.|++++|.....+|....
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccc
Confidence 88887777887755 677788888777765444432110
Q ss_pred ---------CCCCCcEEEccCCCcc-ccchhhhccCCCcEeecccCcCCCcCCCC-------eEeccCCCCcccccc
Q 012324 379 ---------QLSSPIILNLAKTNIE-RIPESIIQLFVLRYLLLSYSERFQSLPKP-------LFLARGCLALEPFLG 438 (466)
Q Consensus 379 ---------~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~-------~~~l~~~~~L~~l~~ 438 (466)
..++|+.|++++|... .+|..++++++|+.|++++|..++.+|.. ...+.+|..|+.++.
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 0134566666665433 67878888888888888888777777764 344555655554443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.42 E-value=1.1e-14 Score=139.08 Aligned_cols=184 Identities=20% Similarity=0.084 Sum_probs=111.4
Q ss_pred CCCCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCC--CCCCcccEEeecCccCcccCh-hhhc
Q 012324 255 PNPMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE--ISSGNVCWLFLRGTAIEELPS-SIDR 331 (466)
Q Consensus 255 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~l~~~~i~~lp~-~l~~ 331 (466)
.++..|.++++|+.|+|..|.+--.-.-.|..+++|+.|.+..|.+..---. ....++++|+++.|++..+.+ ++.+
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 3344455566666666655532222233455566666666665554332222 223466888888888887755 4678
Q ss_pred cCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEee
Q 012324 332 LRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLL 410 (466)
Q Consensus 332 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~ 410 (466)
+++|+.|++++|.+...-+.++.-.++|+.|+++.|++..--++.|..+..|+.|.|++|++..+.+ .|..+.+|+.|+
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 8888888888887666667777788888888888877766555666666666666666666664443 455566666666
Q ss_pred cccCcCCCcCCCCeEeccCCCCcccccc
Q 012324 411 LSYSERFQSLPKPLFLARGCLALEPFLG 438 (466)
Q Consensus 411 l~~~~~~~~~p~~~~~l~~~~~L~~l~~ 438 (466)
++.|.+...+.+.-.-..++++|+.+..
T Consensus 372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred CcCCeEEEEEecchhhhccchhhhheee
Confidence 6666555555443333334444444433
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=6.9e-15 Score=119.39 Aligned_cols=150 Identities=29% Similarity=0.337 Sum_probs=129.4
Q ss_pred cccCcccCEEecCCCCCCCccCCC-CCCcccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEE
Q 012324 284 IFNLEFLTKLDLSGCSKLKRLPEI-SSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVL 362 (466)
Q Consensus 284 l~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 362 (466)
+.++.++..|-+++|++....|.. -..+++.|++++|+++++|.+++.+++|+.|+++.|+ ...+|.+++.++.|+.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhh
Confidence 457888888999999877666653 3368899999999999999999999999999999876 77889999999999999
Q ss_pred EecCCCCCC-CCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccc
Q 012324 363 NLCGCSNLQ-RLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEP 435 (466)
Q Consensus 363 ~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~ 435 (466)
++++|++.. .+|..|-.++-|+.|.++.|.+.-+|..++++++|+.|.++.|.++ ++|+++..+..+..|..
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI 180 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence 999988754 6788888899999999999999999999999999999999999854 68988876655544443
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.36 E-value=1.5e-13 Score=131.58 Aligned_cols=167 Identities=23% Similarity=0.159 Sum_probs=133.9
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCC--CCCCcccEEeecCccCcccCh-hhhccCCC
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE--ISSGNVCWLFLRGTAIEELPS-SIDRLRRL 335 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~l~~~~i~~lp~-~l~~l~~L 335 (466)
.|..|.+++.|+|+.|++...--..+.+++.|+.|+++.|.+...-+. .+...|+.|+++.|+++.+++ ++..+..|
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 467788999999999977766666788899999999999887765443 556788999999999998876 57889999
Q ss_pred CeeeccccccccccccccCCCCCCCEEEecCCCCCCCCC---cccCCCCCCcEEEccCCCccccch-hhhccCCCcEeec
Q 012324 336 GYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLP---ECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLL 411 (466)
Q Consensus 336 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p---~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l 411 (466)
++|+++.|.+...-...+..+.+|++|+++.|.+.+.+. ..|..|++|+.|.+.+|++..+|. .|.++.+|++|++
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 999999987554444567788999999999988766543 357779999999999999998886 7889999999999
Q ss_pred ccCcCCCcCCCCeE
Q 012324 412 SYSERFQSLPKPLF 425 (466)
Q Consensus 412 ~~~~~~~~~p~~~~ 425 (466)
.+|.+-.-=|..+-
T Consensus 424 ~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 424 GDNAIASIQPNAFE 437 (873)
T ss_pred CCCcceeecccccc
Confidence 98885544444443
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.30 E-value=2.3e-14 Score=131.20 Aligned_cols=166 Identities=28% Similarity=0.347 Sum_probs=129.3
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC-CcccEEeecCccCcccChhhhccCCC
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GNVCWLFLRGTAIEELPSSIDRLRRL 335 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~l~~~~i~~lp~~l~~l~~L 335 (466)
+.+++.+..+..++..+| -+..+|..+.++.+|..+++.+|+.....|..+. +.++.|+...|-++.+|+.++.+.+|
T Consensus 130 ~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L 208 (565)
T KOG0472|consen 130 PDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESL 208 (565)
T ss_pred CchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhh
Confidence 445777788888888777 4556677777888888888888876655555443 56688888888888999999999899
Q ss_pred CeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccC-CCCCCcEEEccCCCccccchhhhccCCCcEeecccC
Q 012324 336 GYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLG-QLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYS 414 (466)
Q Consensus 336 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~ 414 (466)
..|++..|+ +..+| +|..+..|++|+++. +....+|.+.+ +++.+..||++.|+++++|.++.-+.+|.+||+++|
T Consensus 209 ~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 209 ELLYLRRNK-IRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred HHHHhhhcc-cccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC
Confidence 888888876 66777 588888888888866 55666776655 788888999999998899988888888999999877
Q ss_pred cCCCcCCCCeEec
Q 012324 415 ERFQSLPKPLFLA 427 (466)
Q Consensus 415 ~~~~~~p~~~~~l 427 (466)
. +..+|.+++++
T Consensus 286 ~-is~Lp~sLgnl 297 (565)
T KOG0472|consen 286 D-ISSLPYSLGNL 297 (565)
T ss_pred c-cccCCcccccc
Confidence 6 55677776655
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.17 E-value=3.2e-13 Score=123.81 Aligned_cols=175 Identities=27% Similarity=0.316 Sum_probs=147.5
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC-CcccEEeecCccCcccChhhhccCCC
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GNVCWLFLRGTAIEELPSSIDRLRRL 335 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~l~~~~i~~lp~~l~~l~~L 335 (466)
|+.+..+..++.++.+.| ....+|+.++.+..|..++..+|++....+.... ..+..|++.+|++.++|+..-.++.|
T Consensus 107 p~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L 185 (565)
T KOG0472|consen 107 PEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRL 185 (565)
T ss_pred cHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHH
Confidence 445778889999999988 5667788899999999999998886655444433 46689999999999999988779999
Q ss_pred CeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhh-ccCCCcEeecccC
Q 012324 336 GYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESII-QLFVLRYLLLSYS 414 (466)
Q Consensus 336 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~-~l~~L~~L~l~~~ 414 (466)
++|+...| ..+.+|+.++.+.+|..|++..| ....+| +|..++.|..|+++.|.+..+|.... ++++|..||++.|
T Consensus 186 ~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 186 KHLDCNSN-LLETLPPELGGLESLELLYLRRN-KIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred Hhcccchh-hhhcCChhhcchhhhHHHHhhhc-ccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc
Confidence 99999885 48999999999999999999885 456778 89999999999999999999998776 8999999999998
Q ss_pred cCCCcCCCCeEeccCCCCcccc
Q 012324 415 ERFQSLPKPLFLARGCLALEPF 436 (466)
Q Consensus 415 ~~~~~~p~~~~~l~~~~~L~~l 436 (466)
+ +.++|+++..++++..|+.-
T Consensus 263 k-lke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 263 K-LKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred c-cccCchHHHHhhhhhhhccc
Confidence 8 78899998877766666543
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.13 E-value=1.6e-10 Score=119.89 Aligned_cols=165 Identities=21% Similarity=0.206 Sum_probs=95.5
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeecccc
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDC 343 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~ 343 (466)
++|+.|++++|.+. .+|..+. .+|++|++++|.+. .+|..+...++.|++++|++..+|..+. .+|++|++++|
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 46777777776433 4555442 46777777776643 4565555566777777777776666553 36677777665
Q ss_pred ccccccccccCCCCCCCEEEecCCCCCCCCCcccC-------------------CCCCCcEEEccCCCccccchhhhccC
Q 012324 344 KRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLG-------------------QLSSPIILNLAKTNIERIPESIIQLF 404 (466)
Q Consensus 344 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~-------------------~l~~L~~L~l~~~~l~~lp~~l~~l~ 404 (466)
.+ ..+|..+. .+|+.|++++|.+.. +|..+. -.++|+.|++++|.++.+|..+. +
T Consensus 273 ~L-~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~ 346 (754)
T PRK15370 273 KI-SCLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--P 346 (754)
T ss_pred cc-CccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--C
Confidence 53 34555443 366666666655442 332211 12467777777777777766543 5
Q ss_pred CCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccCCC
Q 012324 405 VLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQRI 446 (466)
Q Consensus 405 ~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~~~ 446 (466)
+|+.|++++|++. .+|..+. +.|+.+....+.+..+
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp-----~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP-----PTITTLDVSRNALTNL 382 (754)
T ss_pred cccEEECCCCCCC-cCChhhc-----CCcCEEECCCCcCCCC
Confidence 7888888877643 4665331 2444444444444433
No 16
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=1.3e-12 Score=125.04 Aligned_cols=158 Identities=32% Similarity=0.379 Sum_probs=131.2
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC-CcccEEeecCccCcccChhhhccCCCCee
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GNVCWLFLRGTAIEELPSSIDRLRRLGYL 338 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~l~~~~i~~lp~~l~~l~~L~~L 338 (466)
+..+..|..+.++.| .+..+|..++++..|.+|+++.|++. .+|..++ --|++|-+++|+++.+|..++.+..|..|
T Consensus 94 ~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 94 ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHL 171 (722)
T ss_pred HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCccccCCcccccchhHHHh
Confidence 444566777777776 56778888999999999999998754 4554444 56799999999999999999999999999
Q ss_pred eccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCC
Q 012324 339 NLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQ 418 (466)
Q Consensus 339 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 418 (466)
+.+.|. +..+|..++.+.+|+.|++..|. ...+|++++.|+ |..||+++|++..+|-.|.+|+.|++|.|.+|+ ++
T Consensus 172 d~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-Lq 247 (722)
T KOG0532|consen 172 DVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQ 247 (722)
T ss_pred hhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC-CC
Confidence 999877 67788889999999999998855 457788888554 999999999999999999999999999999988 56
Q ss_pred cCCCC
Q 012324 419 SLPKP 423 (466)
Q Consensus 419 ~~p~~ 423 (466)
+.|..
T Consensus 248 SPPAq 252 (722)
T KOG0532|consen 248 SPPAQ 252 (722)
T ss_pred CChHH
Confidence 66664
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.11 E-value=1.3e-10 Score=120.56 Aligned_cols=116 Identities=25% Similarity=0.306 Sum_probs=49.3
Q ss_pred ccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCC
Q 012324 289 FLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCS 368 (466)
Q Consensus 289 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 368 (466)
+|+.|++++|.+. .+|..+..+|+.|++++|+++.+|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|.
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~ 336 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENA 336 (754)
T ss_pred CCCEEECcCCccC-ccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCc
Confidence 4445555444333 3344333444555555555544443321 23444444443322 233222 1344555554443
Q ss_pred CCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCc
Q 012324 369 NLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSE 415 (466)
Q Consensus 369 ~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~ 415 (466)
+.. +|..+. ++|+.|++++|+++.+|..+ .++|+.|++++|.
T Consensus 337 Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 337 LTS-LPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred ccc-CChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCc
Confidence 332 343332 34555555555555444433 1345555555544
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.05 E-value=3.4e-10 Score=116.98 Aligned_cols=122 Identities=24% Similarity=0.237 Sum_probs=79.7
Q ss_pred ccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCC
Q 012324 289 FLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCS 368 (466)
Q Consensus 289 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 368 (466)
+|++|++++|.+.. +|. ...+++.|++++|.+..+|.. ..+|+.|++++|.+ ..+|.. ..+|+.|++++|.
T Consensus 343 ~Lq~LdLS~N~Ls~-LP~-lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~L-t~LP~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 343 GLQELSVSDNQLAS-LPT-LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRL-TSLPVL---PSELKELMVSGNR 413 (788)
T ss_pred ccceEecCCCccCC-CCC-CCcccceehhhccccccCccc---ccccceEEecCCcc-cCCCCc---ccCCCEEEccCCc
Confidence 45555555554332 332 123445555555555555532 24577777777664 345542 3567888888876
Q ss_pred CCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCcCCCC
Q 012324 369 NLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQSLPKP 423 (466)
Q Consensus 369 ~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~ 423 (466)
+. .+|.. ..+|+.|++++|+++.+|..+.++++|+.|++++|++.+..|..
T Consensus 414 Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 414 LT-SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred CC-CCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 54 46653 34678889999999999999999999999999999887765553
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.95 E-value=1e-10 Score=111.66 Aligned_cols=158 Identities=23% Similarity=0.145 Sum_probs=96.8
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcc---cCEEecCCCCCCCcc----CC---CCCCcccEEeecCccCc-----c
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEF---LTKLDLSGCSKLKRL----PE---ISSGNVCWLFLRGTAIE-----E 324 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~---L~~L~l~~~~~~~~~----~~---~~~~~l~~L~l~~~~i~-----~ 324 (466)
+..+++|+.|++++|.+.+..+..+..+.. |++|++++|.+.+.. .. ....+++.|++++|.++ .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 445678888888777665544444444444 888888877765311 11 11246677888877776 3
Q ss_pred cChhhhccCCCCeeecccccccc----ccccccCCCCCCCEEEecCCCCCCC----CCcccCCCCCCcEEEccCCCccc-
Q 012324 325 LPSSIDRLRRLGYLNLSDCKRLK----SLPSSLCKLKSLKVLNLCGCSNLQR----LPECLGQLSSPIILNLAKTNIER- 395 (466)
Q Consensus 325 lp~~l~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l~~- 395 (466)
++..+..+.+|++|++++|.+.+ .++..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.++.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 34455666778888887776543 2333445566788888877765432 33445667778888888877762
Q ss_pred cchhh-hc----cCCCcEeecccCcCC
Q 012324 396 IPESI-IQ----LFVLRYLLLSYSERF 417 (466)
Q Consensus 396 lp~~l-~~----l~~L~~L~l~~~~~~ 417 (466)
-+..+ .. .+.|++|++++|.+.
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCC
Confidence 11222 22 367888888877654
No 20
>PLN03150 hypothetical protein; Provisional
Probab=98.91 E-value=3.5e-09 Score=109.33 Aligned_cols=110 Identities=30% Similarity=0.391 Sum_probs=94.2
Q ss_pred ccEEeecCccCc-ccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccC
Q 012324 312 VCWLFLRGTAIE-ELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAK 390 (466)
Q Consensus 312 l~~L~l~~~~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 390 (466)
++.|+|++|.+. .+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 577888888887 7788899999999999999988889998899999999999999999999999999999999999999
Q ss_pred CCcc-ccchhhhcc-CCCcEeecccCcCCCcCC
Q 012324 391 TNIE-RIPESIIQL-FVLRYLLLSYSERFQSLP 421 (466)
Q Consensus 391 ~~l~-~lp~~l~~l-~~L~~L~l~~~~~~~~~p 421 (466)
|+++ .+|..++.+ .++..+++.+|..+...|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9988 888887763 567788888887665554
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.89 E-value=3.9e-11 Score=121.11 Aligned_cols=162 Identities=22% Similarity=0.176 Sum_probs=90.2
Q ss_pred CCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC-CCcccEEeecCccCcccChhhh------
Q 012324 258 MLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNVCWLFLRGTAIEELPSSID------ 330 (466)
Q Consensus 258 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~l~~L~l~~~~i~~lp~~l~------ 330 (466)
.++..|.+|+.+....|.+ ..+|..+....+|++|++..|.+....|... .+.+++|++..|++..+|+.+.
T Consensus 258 ~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNAS 336 (1081)
T ss_pred HHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHH
Confidence 4566677777777766643 4444444455555555555544333333222 3455666666665555544221
Q ss_pred --------------------ccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccC
Q 012324 331 --------------------RLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAK 390 (466)
Q Consensus 331 --------------------~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 390 (466)
.+..|+.|.+.+|.+....-+.+.++++|+.|++++|++...-...+.++..|+.|++++
T Consensus 337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG 416 (1081)
T ss_pred HHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc
Confidence 123455555555555544444466677777777777544332223566677777777777
Q ss_pred CCccccchhhhccCCCcEeecccCcCCCcCC
Q 012324 391 TNIERIPESIIQLFVLRYLLLSYSERFQSLP 421 (466)
Q Consensus 391 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p 421 (466)
|+++.+|..+.+++.|++|...+|. +..+|
T Consensus 417 NkL~~Lp~tva~~~~L~tL~ahsN~-l~~fP 446 (1081)
T KOG0618|consen 417 NKLTTLPDTVANLGRLHTLRAHSNQ-LLSFP 446 (1081)
T ss_pred chhhhhhHHHHhhhhhHHHhhcCCc-eeech
Confidence 7777776666666666666665554 33344
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.89 E-value=5.2e-10 Score=106.78 Aligned_cols=159 Identities=22% Similarity=0.154 Sum_probs=119.0
Q ss_pred CCCCCCCcEEEcCCCCCC------cccCcccccCcccCEEecCCCCCCCccCCCCC-----CcccEEeecCccCc-----
Q 012324 260 MPRLNNLVILNLRSGKSL------KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-----GNVCWLFLRGTAIE----- 323 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~l~~L~l~~~~i~----- 323 (466)
+...+.++.++++++... ..++..+..+++|++|++++|.+....+..+. ..++.|++++|++.
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~ 126 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR 126 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH
Confidence 445677999999888654 22445577789999999999988754432211 45899999999887
Q ss_pred ccChhhhcc-CCCCeeecccccccc----ccccccCCCCCCCEEEecCCCCCC----CCCcccCCCCCCcEEEccCCCcc
Q 012324 324 ELPSSIDRL-RRLGYLNLSDCKRLK----SLPSSLCKLKSLKVLNLCGCSNLQ----RLPECLGQLSSPIILNLAKTNIE 394 (466)
Q Consensus 324 ~lp~~l~~l-~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~l~ 394 (466)
.+...+..+ ++|+.|++++|.+.+ .++..+..+.+|++|++++|.+.+ .++..+..+++|+.|++++|.+.
T Consensus 127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 234456677 899999999998663 234456677899999999988774 23445667789999999999886
Q ss_pred -----ccchhhhccCCCcEeecccCcCCC
Q 012324 395 -----RIPESIIQLFVLRYLLLSYSERFQ 418 (466)
Q Consensus 395 -----~lp~~l~~l~~L~~L~l~~~~~~~ 418 (466)
.++..+..+++|++|++++|.+..
T Consensus 207 ~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 207 DEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred hHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 244556778999999999997653
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=5.3e-11 Score=114.12 Aligned_cols=167 Identities=28% Similarity=0.352 Sum_probs=141.8
Q ss_pred CCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCC--CCCcccEEeecCccCcccChhhhccCCCCee
Q 012324 261 PRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSGNVCWLFLRGTAIEELPSSIDRLRRLGYL 338 (466)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L 338 (466)
..+..-...|++.| ....+|...+.|.+|..+.++.|.+ ..+|.. ....+++||++.|+++.+|..++.++ |+.|
T Consensus 72 ~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 72 YDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVL 148 (722)
T ss_pred ccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeE
Confidence 56777788899888 6677888888999999999998764 445543 33577999999999999999999987 9999
Q ss_pred eccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCC
Q 012324 339 NLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQ 418 (466)
Q Consensus 339 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 418 (466)
-+++|+ .+.+|+.++....|..|+.+.|+ ...+|..++.+.+|+.|.++.|++..+|+.+..|+ |..||+++|+ +.
T Consensus 149 i~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNk-is 224 (722)
T KOG0532|consen 149 IVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNK-IS 224 (722)
T ss_pred EEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCc-ee
Confidence 998765 88999999999999999998865 45778899999999999999999999999999776 9999999666 77
Q ss_pred cCCCCeEeccCCCCcc
Q 012324 419 SLPKPLFLARGCLALE 434 (466)
Q Consensus 419 ~~p~~~~~l~~~~~L~ 434 (466)
.+|-.+.+|+++..|.
T Consensus 225 ~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQ 240 (722)
T ss_pred ecchhhhhhhhheeee
Confidence 8999988888776665
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.86 E-value=8.5e-09 Score=106.79 Aligned_cols=61 Identities=23% Similarity=0.171 Sum_probs=35.9
Q ss_pred CCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCcCCCCeEe
Q 012324 358 SLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQSLPKPLFL 426 (466)
Q Consensus 358 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~ 426 (466)
+|+.|++++|.+. .+|.. .++|+.|++++|.++.+|... .+|+.|++++|.+ ..+|..+..
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqL-t~LP~sl~~ 443 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQL-TRLPESLIH 443 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCCCCcch---hhhhhhhhccCcc-cccChHHhh
Confidence 4666666665544 34432 245677777777777666532 3566677777664 457765543
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=7.3e-10 Score=93.99 Aligned_cols=119 Identities=28% Similarity=0.321 Sum_probs=35.7
Q ss_pred EeecCccCcccChhhh-ccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCccc-CCCCCCcEEEccCCC
Q 012324 315 LFLRGTAIEELPSSID-RLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECL-GQLSSPIILNLAKTN 392 (466)
Q Consensus 315 L~l~~~~i~~lp~~l~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~~~~ 392 (466)
|++++|.|+.+. .++ .+.+|+.|++++|.+ ..++ ++..++.|++|++++|.+.. +++.+ ..+++|+.|++++|+
T Consensus 24 L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I-~~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 24 LNLRGNQISTIE-NLGATLDKLEVLDLSNNQI-TKLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp -------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS-
T ss_pred cccccccccccc-chhhhhcCCCEEECCCCCC-cccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCc
Confidence 333334444442 233 455666666666553 3332 35566666666666654443 33233 246666666666666
Q ss_pred ccccc--hhhhccCCCcEeecccCcCCCcCCC-CeEeccCCCCcccccc
Q 012324 393 IERIP--ESIIQLFVLRYLLLSYSERFQSLPK-PLFLARGCLALEPFLG 438 (466)
Q Consensus 393 l~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~~~~L~~l~~ 438 (466)
+..+- ..+..+++|+.|++.+|++... +. ...-+..||+|+.+.+
T Consensus 100 I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 100 ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 65332 3455666677777766665443 32 2233344444444433
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.84 E-value=2.1e-10 Score=105.42 Aligned_cols=172 Identities=21% Similarity=0.182 Sum_probs=111.9
Q ss_pred CCCCCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcc---cEE---------------
Q 012324 254 TPNPMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNV---CWL--------------- 315 (466)
Q Consensus 254 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l---~~L--------------- 315 (466)
..++..|+.+++|++|||+.|.+...-|+.|..+++|..|-+.+++.+..+|...+..| +.|
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al 160 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL 160 (498)
T ss_pred cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH
Confidence 34455789999999999999988888899999999999988888666777775444322 333
Q ss_pred ---------eecCccCcccCh-hhhccCCCCeeecccccc----------------------------------------
Q 012324 316 ---------FLRGTAIEELPS-SIDRLRRLGYLNLSDCKR---------------------------------------- 345 (466)
Q Consensus 316 ---------~l~~~~i~~lp~-~l~~l~~L~~L~l~~~~~---------------------------------------- 345 (466)
.+..|.+..++. .+..+..++.+.+..|..
T Consensus 161 ~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~ 240 (498)
T KOG4237|consen 161 RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED 240 (498)
T ss_pred HHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccc
Confidence 333444444443 344444455444433320
Q ss_pred ---------------------ccccc-cccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhc
Q 012324 346 ---------------------LKSLP-SSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQ 402 (466)
Q Consensus 346 ---------------------~~~~p-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~ 402 (466)
....| ..+..+++|++|++++|.+.+.-+.+|..+..++.|.|..|++..+.. .|.+
T Consensus 241 a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ 320 (498)
T KOG4237|consen 241 ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQG 320 (498)
T ss_pred hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhc
Confidence 00011 024556777777777776666666677777777777777777765433 5677
Q ss_pred cCCCcEeecccCcCCCcCCCCeE
Q 012324 403 LFVLRYLLLSYSERFQSLPKPLF 425 (466)
Q Consensus 403 l~~L~~L~l~~~~~~~~~p~~~~ 425 (466)
+..|+.|++.+|++..-.|..+.
T Consensus 321 ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 321 LSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred cccceeeeecCCeeEEEeccccc
Confidence 88888888888887776666544
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.84 E-value=4.1e-11 Score=120.93 Aligned_cols=171 Identities=22% Similarity=0.225 Sum_probs=126.9
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccChhhhccCCCCeeecc
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPSSIDRLRRLGYLNLS 341 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~ 341 (466)
.+|++++++.+. ...+|+.++.+.+|..+++.+|.+ ..+|..+. ..++.|.+..|.++.+|+...++++|++|++.
T Consensus 241 ~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhh-hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 588888988884 455678888899999999988876 55665444 36788888889999999888889999999998
Q ss_pred cccccccccccc--------------------------CCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccc
Q 012324 342 DCKRLKSLPSSL--------------------------CKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIER 395 (466)
Q Consensus 342 ~~~~~~~~p~~~--------------------------~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~ 395 (466)
.|. +..+|+.+ ..+..|+.|++.+|.+....-..+.++.+|+.|+|+.|.+.+
T Consensus 319 ~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 876 44444321 112346666677777766655678889999999999999999
Q ss_pred cch-hhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCcc
Q 012324 396 IPE-SIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIE 441 (466)
Q Consensus 396 lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~ 441 (466)
+|. .+.++..|+.|.+++|+ +..+|..+. +|..|+++....+
T Consensus 398 fpas~~~kle~LeeL~LSGNk-L~~Lp~tva---~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNK-LTTLPDTVA---NLGRLHTLRAHSN 440 (1081)
T ss_pred CCHHHHhchHHhHHHhcccch-hhhhhHHHH---hhhhhHHHhhcCC
Confidence 998 56789999999999988 566886543 4445554444333
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=3.6e-09 Score=89.77 Aligned_cols=124 Identities=24% Similarity=0.216 Sum_probs=46.4
Q ss_pred cCcccCEEecCCCCCCCccCCC--CCCcccEEeecCccCcccChhhhccCCCCeeecccccccccccccc-CCCCCCCEE
Q 012324 286 NLEFLTKLDLSGCSKLKRLPEI--SSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSL-CKLKSLKVL 362 (466)
Q Consensus 286 ~l~~L~~L~l~~~~~~~~~~~~--~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L 362 (466)
+..++++|++++|.+.. +... ....++.|++++|.++.++ .+..+++|++|++++|.+. .+++++ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc-ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 33445555555544332 1111 1234555555567777664 4677888888888887743 444334 357888888
Q ss_pred EecCCCCCC-CCCcccCCCCCCcEEEccCCCccccch----hhhccCCCcEeecc
Q 012324 363 NLCGCSNLQ-RLPECLGQLSSPIILNLAKTNIERIPE----SIIQLFVLRYLLLS 412 (466)
Q Consensus 363 ~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~l~~lp~----~l~~l~~L~~L~l~ 412 (466)
++++|.+.. .--..+..+++|+.|++.+|.+..-+. .+..+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 888876533 112456778899999999988885444 46789999999854
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.1e-09 Score=100.30 Aligned_cols=157 Identities=20% Similarity=0.155 Sum_probs=114.8
Q ss_pred CCCCCCCCcEEEcCCCCCCc--ccCcccccCcccCEEecCCCCCCCccCC---CCCCcccEEeecCccCc--ccChhhhc
Q 012324 259 LMPRLNNLVILNLRSGKSLK--SLPSGIFNLEFLTKLDLSGCSKLKRLPE---ISSGNVCWLFLRGTAIE--ELPSSIDR 331 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~l~~~~i~--~lp~~l~~ 331 (466)
-...|++++.|||+.|-+.. .+......+++|+.|+++.|.+.-.... .....++.|.+++|.++ .+......
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 45678999999999985442 2334455789999999999986643332 34457799999999888 45556678
Q ss_pred cCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCC--cccCCCCCCcEEEccCCCcc--ccchh-----hhc
Q 012324 332 LRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLP--ECLGQLSSPIILNLAKTNIE--RIPES-----IIQ 402 (466)
Q Consensus 332 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~l~--~lp~~-----l~~ 402 (466)
+++|..|.+..|.....-......++.|++|++++|++.. .+ ...+.++.|..|+++.+.+. ..|+. ...
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 8999999999885333333334567889999999877653 23 35778889999999988888 44553 356
Q ss_pred cCCCcEeecccCcC
Q 012324 403 LFVLRYLLLSYSER 416 (466)
Q Consensus 403 l~~L~~L~l~~~~~ 416 (466)
+++|++|.+..|++
T Consensus 300 f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 300 FPKLEYLNISENNI 313 (505)
T ss_pred cccceeeecccCcc
Confidence 78999999998874
No 30
>PLN03150 hypothetical protein; Provisional
Probab=98.72 E-value=2.4e-08 Score=103.16 Aligned_cols=106 Identities=31% Similarity=0.382 Sum_probs=68.8
Q ss_pred CcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeecccccc
Q 012324 266 LVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKR 345 (466)
Q Consensus 266 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~ 345 (466)
++.|+|++|.+.+.+|..++++++|+.|++++|.+.+ .+|..++.+++|+.|++++|.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g---------------------~iP~~~~~l~~L~~LdLs~N~l 478 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG---------------------NIPPSLGSITSLEVLDLSYNSF 478 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC---------------------cCChHHhCCCCCCEEECCCCCC
Confidence 6677777777777777777777777777777765444 4455566666666666666666
Q ss_pred ccccccccCCCCCCCEEEecCCCCCCCCCcccCCC-CCCcEEEccCCC
Q 012324 346 LKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQL-SSPIILNLAKTN 392 (466)
Q Consensus 346 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l-~~L~~L~l~~~~ 392 (466)
.+.+|..++++++|+.|++++|.+.+.+|..++.+ .++..+++.+|.
T Consensus 479 sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 66666666666666666666666666666655542 345555555554
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=1.1e-08 Score=100.77 Aligned_cols=159 Identities=36% Similarity=0.401 Sum_probs=124.9
Q ss_pred CCCC-CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCC-CCCcccEEeecCccCcccChhhhccCCCCe
Q 012324 260 MPRL-NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI-SSGNVCWLFLRGTAIEELPSSIDRLRRLGY 337 (466)
Q Consensus 260 ~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~ 337 (466)
...+ ++|+.|++++| ....+|..+..+++|+.|+++.|++....+.. ....++.|++++|.+..+|..+.....|++
T Consensus 135 ~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~ 213 (394)
T COG4886 135 IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEE 213 (394)
T ss_pred cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhh
Confidence 3344 38999999888 45556556788999999999998866655544 667889999999999999988777788999
Q ss_pred eeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCC
Q 012324 338 LNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERF 417 (466)
Q Consensus 338 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 417 (466)
+.+.+|. ....+..+.++.++..+.+.+|. ...++..++.+++++.|++++|.++.++. ++.+.+|+.|+++++.+.
T Consensus 214 l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 214 LDLSNNS-IIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhhcCCc-ceecchhhhhcccccccccCCce-eeeccchhccccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 9999875 34455567888888888876644 33447788889999999999999998877 888999999999998776
Q ss_pred CcCCC
Q 012324 418 QSLPK 422 (466)
Q Consensus 418 ~~~p~ 422 (466)
..+|.
T Consensus 291 ~~~~~ 295 (394)
T COG4886 291 NALPL 295 (394)
T ss_pred ccchh
Confidence 55554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=1.6e-09 Score=96.32 Aligned_cols=107 Identities=25% Similarity=0.253 Sum_probs=80.2
Q ss_pred cccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccC
Q 012324 311 NVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAK 390 (466)
Q Consensus 311 ~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 390 (466)
.++.|+++.|++..+.. +..+++|+.||+++|. ...+..+-.++.++++|.+.+|. ...+ ++++++-+|..|++++
T Consensus 308 kir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 308 KLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSS 383 (490)
T ss_pred ceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhh-Hhhh-hhhHhhhhheeccccc
Confidence 34555555577776655 7889999999999976 44444444578899999999854 3333 4788888999999999
Q ss_pred CCccccc--hhhhccCCCcEeecccCcCCCcCCC
Q 012324 391 TNIERIP--ESIIQLFVLRYLLLSYSERFQSLPK 422 (466)
Q Consensus 391 ~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~ 422 (466)
|+|..+- ..++++|.|+++.+.+|++.+ +|+
T Consensus 384 N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~vd 416 (490)
T KOG1259|consen 384 NQIEELDEVNHIGNLPCLETLRLTGNPLAG-SVD 416 (490)
T ss_pred cchhhHHHhcccccccHHHHHhhcCCCccc-cch
Confidence 9998553 478999999999999998544 444
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.62 E-value=3.2e-08 Score=97.40 Aligned_cols=159 Identities=30% Similarity=0.348 Sum_probs=124.5
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCc-ccCEEecCCCCCCCc-cCCCCCCcccEEeecCccCcccChhhhccCCCCe
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLE-FLTKLDLSGCSKLKR-LPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGY 337 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~-~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~ 337 (466)
+..++.++.+++.++ ....++.....++ +|+.|++++|.+... .+.....+++.|+++.|++..+|...+..+.|+.
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 445578899999777 4555666666664 899999999876554 3556667889999999999999988778899999
Q ss_pred eeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCC
Q 012324 338 LNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERF 417 (466)
Q Consensus 338 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 417 (466)
|++++|. ...+|..+.....|+++.+++|. ....+..+.++.++..+.+.+|.+..++..++.++++++|++++|. +
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i 267 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-I 267 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccccceecccccc-c
Confidence 9999876 67777766667779999998864 3355667888888888888888888878888999999999999877 4
Q ss_pred CcCCC
Q 012324 418 QSLPK 422 (466)
Q Consensus 418 ~~~p~ 422 (466)
.+++.
T Consensus 268 ~~i~~ 272 (394)
T COG4886 268 SSISS 272 (394)
T ss_pred ccccc
Confidence 44444
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2e-08 Score=93.90 Aligned_cols=190 Identities=19% Similarity=0.061 Sum_probs=125.7
Q ss_pred CCCCCCCcEEEcCCCCCCcccC--cccccCcccCEEecCCCCCCCccCC----CCCCcccEEeecCccCcccChh--hhc
Q 012324 260 MPRLNNLVILNLRSGKSLKSLP--SGIFNLEFLTKLDLSGCSKLKRLPE----ISSGNVCWLFLRGTAIEELPSS--IDR 331 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~l~~~~i~~lp~~--l~~ 331 (466)
-+++++|+.+.|.++ ..+..+ .....|++++.||+++|-+..--+- .-.++++.|+++.|.+...-.+ -..
T Consensus 117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 356788999999666 344333 3466899999999999865543331 2345778999999888744332 236
Q ss_pred cCCCCeeeccccccccc-cccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccc--hhhhccCCCcE
Q 012324 332 LRRLGYLNLSDCKRLKS-LPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIP--ESIIQLFVLRY 408 (466)
Q Consensus 332 l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp--~~l~~l~~L~~ 408 (466)
+++|+.|.++.|.+... +...+..+++|..|++.+|+....-.....-++.|+.|+|++|++...+ ...+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 78899999999886643 2233456889999999987533332233445678999999999998666 45788999999
Q ss_pred eecccCcCCC-cCCCC--eEeccCCCCccccccCccccCCCCCCC
Q 012324 409 LLLSYSERFQ-SLPKP--LFLARGCLALEPFLGIIEDTQRIPHSD 450 (466)
Q Consensus 409 L~l~~~~~~~-~~p~~--~~~l~~~~~L~~l~~~~~~~~~~~~~~ 450 (466)
|.++.|.+.. ..|+- .-....+++|+.+....+.+....+..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~ 320 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN 320 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc
Confidence 9999887543 22321 223345566666655444443333333
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.8e-07 Score=65.00 Aligned_cols=59 Identities=29% Similarity=0.405 Sum_probs=41.8
Q ss_pred CCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecccCc
Q 012324 357 KSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSYSE 415 (466)
Q Consensus 357 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 415 (466)
++|++|++++|.+...-+..|..+++|+.|++++|.++.++. .|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356777777765554444567777777777777777776654 66777788888877775
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.36 E-value=2.3e-07 Score=98.34 Aligned_cols=151 Identities=28% Similarity=0.330 Sum_probs=111.1
Q ss_pred CCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCC-CCccCCCC---CCcccEEeecCc-cCcccChhhhccCCC
Q 012324 261 PRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSK-LKRLPEIS---SGNVCWLFLRGT-AIEELPSSIDRLRRL 335 (466)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~---~~~l~~L~l~~~-~i~~lp~~l~~l~~L 335 (466)
.+....+...+.+| ....++... .++.|+.|-+.+|.. ...++..+ .+.|++||+++| .+..+|+.++++-+|
T Consensus 520 ~~~~~~rr~s~~~~-~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNN-KIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEecc-chhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 34467778888776 344455443 566899999888863 44444432 357799999975 566999999999999
Q ss_pred CeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc---ccchhhhccCCCcEeecc
Q 012324 336 GYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE---RIPESIIQLFVLRYLLLS 412 (466)
Q Consensus 336 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~l~ 412 (466)
++|+++++. +..+|.+++++..|.+|++..+.....+|.....|++|++|.+...... .....+.++.+|+.+.+.
T Consensus 598 ryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 999999865 6699999999999999999987777777777777999999999765533 233445566666666554
Q ss_pred cC
Q 012324 413 YS 414 (466)
Q Consensus 413 ~~ 414 (466)
..
T Consensus 677 ~~ 678 (889)
T KOG4658|consen 677 IS 678 (889)
T ss_pred cc
Confidence 33
No 37
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.29 E-value=7.8e-06 Score=89.56 Aligned_cols=198 Identities=15% Similarity=0.179 Sum_probs=122.5
Q ss_pred eEEEEEeCCCChH--hHH-HHHhcCCCCCCCcEEEEEeCChhh---HhhcCcceEEEcc----CCChhhHHHHHHHhhcC
Q 012324 2 KVLIVFDDVTCFS--QLE-SIIRSLDWLTPVSRIIITTRNKQV---LRNWGVRKIYEIE----ALENHHALELFSRHAFK 71 (466)
Q Consensus 2 r~LlvlDd~~~~~--~~~-~l~~~~~~~~~gs~IlvTTR~~~v---~~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~ 71 (466)
+++|||||+...+ ... .+...++....+-++|+|||..-- ..........+++ +|+.+|+.++|......
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~ 201 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS 201 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC
Confidence 5899999996532 222 332223333456688899998421 1111122355666 99999999999875422
Q ss_pred CCCCCchHHHHHHHHHHHhCCCceeehhhhhhcccCCHHHHHHHHHHHHhccchhHHHHHHH-HHhcCchhhhhhhceee
Q 012324 72 RNHPDVGYEKLSSKVMKYAQGVPLALKVLGCFLYEREKEVSESAINKLQRILHPSILEVLKI-SYDSLDNKEKNIFLDVA 150 (466)
Q Consensus 72 ~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~~~l~~-sy~~L~~~~~~~~~~~~ 150 (466)
. . ..+.+.+|.+.|+|+|+++..++..++..... .......+.......+...+.- .++.||++.+..+...+
T Consensus 202 ~--~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a 275 (903)
T PRK04841 202 P--I---EAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCS 275 (903)
T ss_pred C--C---CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 1 1 24556789999999999999888766543210 0111112211112335554433 47899999999999999
Q ss_pred ccCCCccHHHHHHHHHhcCCCccchhhhhhcccceE-Ec--CCCeEEecHHHHHHHHHHHh
Q 012324 151 CFFQGEDVNLVMKFLNASGFYPEIGISVLVDKSLIA-IG--SYNKIRMHDLLQELGREIVR 208 (466)
Q Consensus 151 ~fp~~~~~~~l~~~~~~~~~~~~~~~~~L~~~sl~~-~~--~~~~~~~hdlv~~~~~~~~~ 208 (466)
+++ .++........ . .-.....+..|.+.+++. .. ....|++|++++++......
T Consensus 276 ~~~-~~~~~l~~~l~-~-~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 276 VLR-SMNDALIVRVT-G-EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred ccc-cCCHHHHHHHc-C-CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 986 55543322222 1 112345588888888854 22 23479999999999987763
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=6.2e-07 Score=62.32 Aligned_cols=58 Identities=28% Similarity=0.385 Sum_probs=32.7
Q ss_pred cccEEeecCccCcccCh-hhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCC
Q 012324 311 NVCWLFLRGTAIEELPS-SIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCS 368 (466)
Q Consensus 311 ~l~~L~l~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 368 (466)
++++|++++|++..+|+ .+..+++|++|++++|.+...-|..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35566666666666654 34556666666666555443334455566666666665543
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=4.3e-07 Score=81.06 Aligned_cols=182 Identities=20% Similarity=0.166 Sum_probs=115.7
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCC---ccCC------------CCC----------CcccE
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLK---RLPE------------ISS----------GNVCW 314 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~------------~~~----------~~l~~ 314 (466)
++-+++|+.+.++.|. ...+-+....-+.|+.+.+....... -+|. ... +.++.
T Consensus 210 l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred hHHhhhhheeeeeccc-hhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 3445677777777763 33333323334556666655433221 1111 000 13578
Q ss_pred EeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc
Q 012324 315 LFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE 394 (466)
Q Consensus 315 L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 394 (466)
+++++|.|+.+.++..-++.++.|++++|.+.. +. .+..+++|+.|++++|.+. .+-.+=.++-|.+.|.+++|.+.
T Consensus 289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred ccccccchhhhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh
Confidence 899999999888888888999999999887433 32 3778889999999886544 33334445778889999999888
Q ss_pred ccchhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccCCCCC
Q 012324 395 RIPESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQRIPH 448 (466)
Q Consensus 395 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~~~~~ 448 (466)
.+ ++++.+-+|.+||+++|++-. + ++...+.+++-|+.+....+++..+..
T Consensus 366 ~L-SGL~KLYSLvnLDl~~N~Ie~-l-deV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 366 TL-SGLRKLYSLVNLDLSSNQIEE-L-DEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hh-hhhHhhhhheeccccccchhh-H-HHhcccccccHHHHHhhcCCCccccch
Confidence 77 467888889999999887422 1 123334455566665555555555443
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=1.1e-07 Score=94.34 Aligned_cols=125 Identities=23% Similarity=0.108 Sum_probs=87.0
Q ss_pred cccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccC
Q 012324 311 NVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAK 390 (466)
Q Consensus 311 ~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 390 (466)
.|.+.+++.|.+..+..++.-++.|+.|++++|++...- .+..++.|++|++++|. ...+|..-..=.+|..|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeecc
Confidence 456777788888888888888899999999998754443 57788899999998854 446664322223588999999
Q ss_pred CCccccchhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCcc
Q 012324 391 TNIERIPESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIE 441 (466)
Q Consensus 391 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~ 441 (466)
|.++++ .++.+|.+|+.||+++|-+.+.-. +.-+..+..|..+...++
T Consensus 242 N~l~tL-~gie~LksL~~LDlsyNll~~hse--L~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 242 NALTTL-RGIENLKSLYGLDLSYNLLSEHSE--LEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred cHHHhh-hhHHhhhhhhccchhHhhhhcchh--hhHHHHHHHHHHHhhcCC
Confidence 988877 468888999999999886544221 222334444554444444
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.17 E-value=2.3e-07 Score=85.80 Aligned_cols=136 Identities=28% Similarity=0.320 Sum_probs=89.7
Q ss_pred CCccCCCCCCcccEEeecCccCcccCh-hhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCc-ccC
Q 012324 301 LKRLPEISSGNVCWLFLRGTAIEELPS-SIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPE-CLG 378 (466)
Q Consensus 301 ~~~~~~~~~~~l~~L~l~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~-~l~ 378 (466)
..++|..+......++|..|.|+.+|+ .|+.+++|+.|+++.|.+....|..+..+.+|..|-+-+++.+..+|+ .|+
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 345666666667777777788887776 467778888888887777667777777777777776666555555554 577
Q ss_pred CCCCCcEEEccCCCccccc-hhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccC
Q 012324 379 QLSSPIILNLAKTNIERIP-ESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGI 439 (466)
Q Consensus 379 ~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~ 439 (466)
.+..|+.|.+.-|++..++ ..+..|++|..|.+..|. .+.+++..+ .++..++.+...
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf--~~l~~i~tlhlA 196 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTF--QGLAAIKTLHLA 196 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccc--cchhccchHhhh
Confidence 7777777777777777443 467777777777777665 444554221 234444444443
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=8.9e-08 Score=85.31 Aligned_cols=155 Identities=21% Similarity=0.191 Sum_probs=91.7
Q ss_pred CCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCccc--ChhhhccCCCCee
Q 012324 261 PRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEEL--PSSIDRLRRLGYL 338 (466)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l--p~~l~~l~~L~~L 338 (466)
+.|.+|+.|.++|+.+.+.+...+.+-.+|+.|++++| +.+++. .--+.+++.|+.|
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~---------------------sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC---------------------SGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccc---------------------cccchhHHHHHHHhhhhHhhc
Confidence 34455556666665555555555555555666666655 344432 2235678888888
Q ss_pred ecccccccccccccc-C-CCCCCCEEEecCCCCC---CCCCcccCCCCCCcEEEccCCCcc--ccchhhhccCCCcEeec
Q 012324 339 NLSDCKRLKSLPSSL-C-KLKSLKVLNLCGCSNL---QRLPECLGQLSSPIILNLAKTNIE--RIPESIIQLFVLRYLLL 411 (466)
Q Consensus 339 ~l~~~~~~~~~p~~~-~-~l~~L~~L~l~~~~~~---~~~p~~l~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l 411 (466)
++++|.........+ . --.+|+.|+++|+... ..+.--..++++|-+||++.|... ..-..|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 888886544432211 1 1246777888775421 122223456788888888765433 34446677888888888
Q ss_pred ccCcCCCcCCCCeEeccCCCCcccccc
Q 012324 412 SYSERFQSLPKPLFLARGCLALEPFLG 438 (466)
Q Consensus 412 ~~~~~~~~~p~~~~~l~~~~~L~~l~~ 438 (466)
+.|. +-+|..+.++..-++|..+..
T Consensus 346 sRCY--~i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 346 SRCY--DIIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred hhhc--CCChHHeeeeccCcceEEEEe
Confidence 8876 446666666666666665543
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=7e-07 Score=88.24 Aligned_cols=151 Identities=28% Similarity=0.235 Sum_probs=101.7
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeee
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLN 339 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~ 339 (466)
+..+++|+.+++.+|.+. .+...+..+++|++|++++|.+....+-.....|+.|++.+|.|..+.. +..+..|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchh-hcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence 677899999999988544 3443367899999999999988776666556668999999999987753 44588999999
Q ss_pred ccccccccccc-cccCCCCCCCEEEecCCCCCCCCCcccCCCCC------------------------CcEEEccCCCcc
Q 012324 340 LSDCKRLKSLP-SSLCKLKSLKVLNLCGCSNLQRLPECLGQLSS------------------------PIILNLAKTNIE 394 (466)
Q Consensus 340 l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~------------------------L~~L~l~~~~l~ 394 (466)
+++|.+...-+ . ...+.+++.+.+.+|..... +.+..+.. |+.+++++|.+.
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc
Confidence 99987544333 2 46788888888887654321 12222222 455555555555
Q ss_pred ccchhhhccCCCcEeecccCc
Q 012324 395 RIPESIIQLFVLRYLLLSYSE 415 (466)
Q Consensus 395 ~lp~~l~~l~~L~~L~l~~~~ 415 (466)
.++..+..++++..|++..|.
T Consensus 246 ~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 246 RSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred cccccccccccccccchhhcc
Confidence 554445555555555555544
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=1.5e-05 Score=76.15 Aligned_cols=62 Identities=24% Similarity=0.308 Sum_probs=40.2
Q ss_pred CCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCc-cCcccChh
Q 012324 263 LNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGT-AIEELPSS 328 (466)
Q Consensus 263 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~-~i~~lp~~ 328 (466)
+++++.|++++| ....+|. --.+|+.|.+++|.....+|..+..+|+.|++++| .+..+|+.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccccc
Confidence 466777777777 4455552 12347777777777666677666667777777776 66666643
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=1.6e-05 Score=76.06 Aligned_cols=119 Identities=23% Similarity=0.400 Sum_probs=75.5
Q ss_pred cccCcccCEEecCCCCCCCccCCCCCCcccEEeecC-ccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEE
Q 012324 284 IFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRG-TAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVL 362 (466)
Q Consensus 284 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~-~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 362 (466)
+..+.+++.|++++| .+..+| .+..+++.|.+++ +.++.+|..+. .+|++|++++|..+..+|.+ |+.|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP-VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC-CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceE
Confidence 445789999999998 466667 4556799999987 56677776553 58999999998666677754 5556
Q ss_pred EecCCC--CCCCCCcccCCC------------------CCCcEEEccCCCccccchhhhccCCCcEeecccC
Q 012324 363 NLCGCS--NLQRLPECLGQL------------------SSPIILNLAKTNIERIPESIIQLFVLRYLLLSYS 414 (466)
Q Consensus 363 ~l~~~~--~~~~~p~~l~~l------------------~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~ 414 (466)
++.++. ..+.+|..+..| ++|+.|++++|....+|..+- .+|++|+++.+
T Consensus 118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 665432 244555543322 245556665555444443222 35555555443
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=6.5e-06 Score=73.69 Aligned_cols=179 Identities=20% Similarity=0.185 Sum_probs=115.4
Q ss_pred CCCCCCcEEEcCCCCCCc--ccCcccccCcccCEEecCCCCCCCccCC--CCCCcccEEeecCccCc--ccChhhhccCC
Q 012324 261 PRLNNLVILNLRSGKSLK--SLPSGIFNLEFLTKLDLSGCSKLKRLPE--ISSGNVCWLFLRGTAIE--ELPSSIDRLRR 334 (466)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~l~~~~i~--~lp~~l~~l~~ 334 (466)
..+++++.+||.+|.+.+ ++...+.++|.|+.|+++.|.+...+.. .-..++++|-+.++.+. ...+.+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345788888888885542 3444466788888999988876654332 34467888888887766 55556677777
Q ss_pred CCeeeccccccccc---------cccc---c-----------------CCCCCCCEEEecCCCCCCC-CCcccCCCCCCc
Q 012324 335 LGYLNLSDCKRLKS---------LPSS---L-----------------CKLKSLKVLNLCGCSNLQR-LPECLGQLSSPI 384 (466)
Q Consensus 335 L~~L~l~~~~~~~~---------~p~~---~-----------------~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~ 384 (466)
++.|.++.|..... +..+ + .-++++..+-+..|++... --+....++.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 78777776632111 0000 0 1133444444444433221 123345567788
Q ss_pred EEEccCCCccccc--hhhhccCCCcEeecccCcCCCcCCC---CeEeccCCCCccccccC
Q 012324 385 ILNLAKTNIERIP--ESIIQLFVLRYLLLSYSERFQSLPK---PLFLARGCLALEPFLGI 439 (466)
Q Consensus 385 ~L~l~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~---~~~~l~~~~~L~~l~~~ 439 (466)
.|+++.|++.+.. +.+..+++|+.|.+..+++...+.. ...-+..+++++.+.+.
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 8999999988442 4788999999999999998766654 24556778888877764
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.89 E-value=2.9e-06 Score=77.54 Aligned_cols=157 Identities=18% Similarity=0.081 Sum_probs=85.5
Q ss_pred CCCCCCCcEEEcCCCCCCcccC----cccccCcccCEEecCCCCCCCccCC---------------CCCCcccEEeecCc
Q 012324 260 MPRLNNLVILNLRSGKSLKSLP----SGIFNLEFLTKLDLSGCSKLKRLPE---------------ISSGNVCWLFLRGT 320 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~---------------~~~~~l~~L~l~~~ 320 (466)
+..+++|++++|++|-+...-+ .-+..+..|++|.+.+|.+...-.. .....|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 4455678888888876554332 2245577777777777654321100 11235577777777
Q ss_pred cCcccC-----hhhhccCCCCeeeccccccccc----cccccCCCCCCCEEEecCCCCCCC----CCcccCCCCCCcEEE
Q 012324 321 AIEELP-----SSIDRLRRLGYLNLSDCKRLKS----LPSSLCKLKSLKVLNLCGCSNLQR----LPECLGQLSSPIILN 387 (466)
Q Consensus 321 ~i~~lp-----~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~ 387 (466)
++..-+ ..+...+.|..+.+..|.+... +...+..+++|+.|++..|.++.. +...+..+++|+.++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 666332 3445556666666666543221 123345566666666666655432 233455566666666
Q ss_pred ccCCCcc-----ccchhhh-ccCCCcEeecccCcC
Q 012324 388 LAKTNIE-----RIPESII-QLFVLRYLLLSYSER 416 (466)
Q Consensus 388 l~~~~l~-----~lp~~l~-~l~~L~~L~l~~~~~ 416 (466)
++.|.+. .+...+. ..|+|+.|.+.+|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 6666655 1222222 256666666666654
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=2.6e-05 Score=49.68 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=22.9
Q ss_pred CCCcEEEccCCCccccchhhhccCCCcEeecccCcC
Q 012324 381 SSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSER 416 (466)
Q Consensus 381 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 416 (466)
++|+.|++++|+++.+|..+++|++|+.|++++|++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 356677777777776666667777777777776653
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=3.4e-06 Score=83.38 Aligned_cols=128 Identities=30% Similarity=0.227 Sum_probs=86.9
Q ss_pred CCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccC-CCCCCcccEEeecCccCcccChhhhccCCCCeeec
Q 012324 262 RLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLP-EISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNL 340 (466)
Q Consensus 262 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l 340 (466)
.+..+..+.+..|.+. ..-..+..+++|.+|++.+|.+.+... .....+|++|++++|.|+.+. .+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 3455556666666333 333347788999999999987666555 455678888888888888764 3566677888888
Q ss_pred cccccccccccccCCCCCCCEEEecCCCCCCCCC-cccCCCCCCcEEEccCCCcc
Q 012324 341 SDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLP-ECLGQLSSPIILNLAKTNIE 394 (466)
Q Consensus 341 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~ 394 (466)
.+|. +..+. ++..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCc-chhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 8876 33333 35567888888888866554333 1 466777888888777665
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.64 E-value=1e-05 Score=74.10 Aligned_cols=157 Identities=17% Similarity=0.081 Sum_probs=110.0
Q ss_pred CCCCCCCcEEEcCCCCCCcc-------------cCcccccCcccCEEecCCCCCCCccCC------CCCCcccEEeecCc
Q 012324 260 MPRLNNLVILNLRSGKSLKS-------------LPSGIFNLEFLTKLDLSGCSKLKRLPE------ISSGNVCWLFLRGT 320 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~-------------~~~~l~~l~~L~~L~l~~~~~~~~~~~------~~~~~l~~L~l~~~ 320 (466)
++++..|+.|.+.+|.+... ...-..+-++||++...+|.+...... ...+.++.+.+..|
T Consensus 116 l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN 195 (382)
T KOG1909|consen 116 LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN 195 (382)
T ss_pred HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecc
Confidence 44567778888877754321 112233457788888888775543221 12256677777777
Q ss_pred cCc-----ccChhhhccCCCCeeeccccccccc----cccccCCCCCCCEEEecCCCCCCCCCccc-----CCCCCCcEE
Q 012324 321 AIE-----ELPSSIDRLRRLGYLNLSDCKRLKS----LPSSLCKLKSLKVLNLCGCSNLQRLPECL-----GQLSSPIIL 386 (466)
Q Consensus 321 ~i~-----~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~~p~~l-----~~l~~L~~L 386 (466)
.|. .+...+..+++|+.||+..|.+... +...++.+++|+.+++++|.+.......| ...++|+.+
T Consensus 196 ~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl 275 (382)
T KOG1909|consen 196 GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVL 275 (382)
T ss_pred cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCcee
Confidence 765 3455778899999999999987544 33557788999999999998865443322 347899999
Q ss_pred EccCCCcc-----ccchhhhccCCCcEeecccCcC
Q 012324 387 NLAKTNIE-----RIPESIIQLFVLRYLLLSYSER 416 (466)
Q Consensus 387 ~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~ 416 (466)
.+.+|.++ .+-..+...+.|+.|.+++|.+
T Consensus 276 ~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 276 ELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999998 2333566799999999999985
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=7.5e-05 Score=47.56 Aligned_cols=40 Identities=33% Similarity=0.390 Sum_probs=26.7
Q ss_pred CCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccc
Q 012324 357 KSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIP 397 (466)
Q Consensus 357 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp 397 (466)
++|++|++++|.+. .+|..+++|++|+.|++++|.++.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35777777776555 45656777777777777777777654
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=2.1e-05 Score=81.57 Aligned_cols=150 Identities=26% Similarity=0.219 Sum_probs=86.7
Q ss_pred CCCcEEEcCCCCCC-cccCccccc-CcccCEEecCCCCCCCcc-C--CCCCCcccEEeecCccCcccChhhhccCCCCee
Q 012324 264 NNLVILNLRSGKSL-KSLPSGIFN-LEFLTKLDLSGCSKLKRL-P--EISSGNVCWLFLRGTAIEELPSSIDRLRRLGYL 338 (466)
Q Consensus 264 ~~L~~L~l~~~~~~-~~~~~~l~~-l~~L~~L~l~~~~~~~~~-~--~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L 338 (466)
.+|+.|+++|.... ...|..++. ||.|+.|.+.+-.+...- . -..+++|..||+++++++.+ .+++.+++||.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 35566666554322 222222322 566666666653322210 0 12334566666666778777 788999999999
Q ss_pred ecccccccc-ccccccCCCCCCCEEEecCCCCCCCC--C----cccCCCCCCcEEEccCCCcc-ccch-hhhccCCCcEe
Q 012324 339 NLSDCKRLK-SLPSSLCKLKSLKVLNLCGCSNLQRL--P----ECLGQLSSPIILNLAKTNIE-RIPE-SIIQLFVLRYL 409 (466)
Q Consensus 339 ~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~--p----~~l~~l~~L~~L~l~~~~l~-~lp~-~l~~l~~L~~L 409 (466)
.+.+-.+.. ..-..+.++++|+.|++|........ . +.-..+|+|+.||.+++.+. .+.+ .+..-++|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 887643322 11124778999999999874433211 1 12234889999999988887 3333 34456677766
Q ss_pred ecccC
Q 012324 410 LLSYS 414 (466)
Q Consensus 410 ~l~~~ 414 (466)
.+-.|
T Consensus 281 ~~~~~ 285 (699)
T KOG3665|consen 281 AALDC 285 (699)
T ss_pred hhhhh
Confidence 65543
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00018 Score=61.04 Aligned_cols=122 Identities=22% Similarity=0.149 Sum_probs=73.7
Q ss_pred cCEEecCCCCCCCccC-CCCCCcccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCC
Q 012324 290 LTKLDLSGCSKLKRLP-EISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCS 368 (466)
Q Consensus 290 L~~L~l~~~~~~~~~~-~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 368 (466)
=+.+++++.++....- .....+...++++.|.+..++ .+..++.|.+|.+.+|.+...-|.--.-+++|+.|.+.+|+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 3455555544322111 122245577888888777654 35567778888888776544444322345668888887765
Q ss_pred CCC--CCCcccCCCCCCcEEEccCCCccccch----hhhccCCCcEeeccc
Q 012324 369 NLQ--RLPECLGQLSSPIILNLAKTNIERIPE----SIIQLFVLRYLLLSY 413 (466)
Q Consensus 369 ~~~--~~p~~l~~l~~L~~L~l~~~~l~~lp~----~l~~l~~L~~L~l~~ 413 (466)
+.. .+ ..+..+++|+.|.+-+|.+..-+. .+..+|+|+.||++.
T Consensus 100 i~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 100 IQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 532 22 345667788888887777764332 356778888888764
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.39 E-value=1.3e-05 Score=63.50 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=37.3
Q ss_pred cEEeecCccCcccChhhh-ccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCC
Q 012324 313 CWLFLRGTAIEELPSSID-RLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKT 391 (466)
Q Consensus 313 ~~L~l~~~~i~~lp~~l~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 391 (466)
+..++++|.+..+|+.+. .++.++.|++.+|. +..+|..+..++.|+.|+++.|.+. ..|+-+..+.+|..|+..+|
T Consensus 56 ~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 56 TKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred EEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 445555555555554442 23344444444433 3444444444444444444443322 23333333444444444444
Q ss_pred Cccccc
Q 012324 392 NIERIP 397 (466)
Q Consensus 392 ~l~~lp 397 (466)
.+..+|
T Consensus 134 a~~eid 139 (177)
T KOG4579|consen 134 ARAEID 139 (177)
T ss_pred ccccCc
Confidence 444443
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.30 E-value=0.00013 Score=75.84 Aligned_cols=130 Identities=20% Similarity=0.232 Sum_probs=87.6
Q ss_pred CcccCEEecCCCCCCCc-cC---CCCCCcccEEeecCccCc--ccChhhhccCCCCeeeccccccccccccccCCCCCCC
Q 012324 287 LEFLTKLDLSGCSKLKR-LP---EISSGNVCWLFLRGTAIE--ELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLK 360 (466)
Q Consensus 287 l~~L~~L~l~~~~~~~~-~~---~~~~~~l~~L~l~~~~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 360 (466)
-.+|++|++++...... .| ....+.|+.|.+++-.+. .+.....++++|..||+++++ +..+ .+++++++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 36789999998654422 22 234467888998885554 344455688999999999865 4444 6788999999
Q ss_pred EEEecCCCCCC-CCCcccCCCCCCcEEEccCCCccccch-------hhhccCCCcEeecccCcCCC
Q 012324 361 VLNLCGCSNLQ-RLPECLGQLSSPIILNLAKTNIERIPE-------SIIQLFVLRYLLLSYSERFQ 418 (466)
Q Consensus 361 ~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~l~~lp~-------~l~~l~~L~~L~l~~~~~~~ 418 (466)
.|.+.+-.+.. ..-..+-+|++|+.||+|......-+. .-..||+|+.||.++..+.+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 99886644332 112356679999999998665543221 12358999999998765443
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.28 E-value=6.6e-06 Score=82.08 Aligned_cols=123 Identities=24% Similarity=0.246 Sum_probs=59.0
Q ss_pred CCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeeccccc
Q 012324 265 NLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCK 344 (466)
Q Consensus 265 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~ 344 (466)
.|.+.+.+.| ....+..++.-++.|+.|+|++|++ .... .+..+++|.+|||++|.
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~----------------------~~v~-~Lr~l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHNKF----------------------TKVD-NLRRLPKLKHLDLSYNC 220 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhh----------------------hhhH-HHHhcccccccccccch
Confidence 4555555555 2333444455566666666666433 2222 34455555555555544
Q ss_pred ccccccc-ccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccc--hhhhccCCCcEeecccCc
Q 012324 345 RLKSLPS-SLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIP--ESIIQLFVLRYLLLSYSE 415 (466)
Q Consensus 345 ~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~~~~ 415 (466)
+..+|. +...+ .|+.|++.+|.... + .++.++.+|+.||++.|-+.... ..++.|..|+.|++.+|+
T Consensus 221 -L~~vp~l~~~gc-~L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 221 -LRHVPQLSMVGC-KLQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -hccccccchhhh-hheeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 333332 11112 25555555543322 1 24455555555665555554221 234555556666666665
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.28 E-value=1.7e-05 Score=62.94 Aligned_cols=110 Identities=21% Similarity=0.273 Sum_probs=82.7
Q ss_pred cccEEeecCccCcccChhh---hccCCCCeeeccccccccccccccC-CCCCCCEEEecCCCCCCCCCcccCCCCCCcEE
Q 012324 311 NVCWLFLRGTAIEELPSSI---DRLRRLGYLNLSDCKRLKSLPSSLC-KLKSLKVLNLCGCSNLQRLPECLGQLSSPIIL 386 (466)
Q Consensus 311 ~l~~L~l~~~~i~~lp~~l---~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 386 (466)
.+..++++++.+-.++... ....+|...++++|. ...+|+.+. +++.+.+|++.+| ....+|.++..++.|+.+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 3466788888887666644 455566667888876 455665554 5668899999884 556788889999999999
Q ss_pred EccCCCccccchhhhccCCCcEeecccCcCCCcCCCC
Q 012324 387 NLAKTNIERIPESIIQLFVLRYLLLSYSERFQSLPKP 423 (466)
Q Consensus 387 ~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~ 423 (466)
+++.|.+...|..+..|.+|-.|+..+|. ...+|-+
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 99999999888888888888889887765 4455555
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.00067 Score=57.71 Aligned_cols=105 Identities=22% Similarity=0.182 Sum_probs=69.7
Q ss_pred CcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhh-ccCCCCeeeccccccc--cccccccCCCCCCCEEE
Q 012324 287 LEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSID-RLRRLGYLNLSDCKRL--KSLPSSLCKLKSLKVLN 363 (466)
Q Consensus 287 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~-~l~~L~~L~l~~~~~~--~~~p~~~~~l~~L~~L~ 363 (466)
+.+...+|+++|.+....--.....+.+|.+.+|+|+.+.+.+. .+++|+.|.+.+|.+. +.+- .+..++.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceee
Confidence 34566788888775443333345678888888888888877664 4567888888887642 2332 366788888888
Q ss_pred ecCCCCCCCCC---cccCCCCCCcEEEccCCC
Q 012324 364 LCGCSNLQRLP---ECLGQLSSPIILNLAKTN 392 (466)
Q Consensus 364 l~~~~~~~~~p---~~l~~l~~L~~L~l~~~~ 392 (466)
+-+|+....-- --+..+++|+.||...-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88866543210 135678888888876543
No 59
>PRK06893 DNA replication initiation factor; Validated
Probab=96.64 E-value=0.0035 Score=56.52 Aligned_cols=89 Identities=13% Similarity=0.296 Sum_probs=57.1
Q ss_pred EEEEeCCCCh---HhHHH-HHhcCCCC-CCCcEEEEEeCC----------hhhHhhcCcceEEEccCCChhhHHHHHHHh
Q 012324 4 LIVFDDVTCF---SQLES-IIRSLDWL-TPVSRIIITTRN----------KQVLRNWGVRKIYEIEALENHHALELFSRH 68 (466)
Q Consensus 4 LlvlDd~~~~---~~~~~-l~~~~~~~-~~gs~IlvTTR~----------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 68 (466)
+|||||+|.. .+|+. +...+... ..|+.|+++|.+ +++.+.+..+.+++++++++++.++++++.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 7999999863 34553 22222211 235556555444 466666777779999999999999999998
Q ss_pred hcCCCCCCchHHHHHHHHHHHhCCCc
Q 012324 69 AFKRNHPDVGYEKLSSKVMKYAQGVP 94 (466)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~~~c~glP 94 (466)
+....-. -..++..-|++.+.|-.
T Consensus 174 a~~~~l~--l~~~v~~~L~~~~~~d~ 197 (229)
T PRK06893 174 AYQRGIE--LSDEVANFLLKRLDRDM 197 (229)
T ss_pred HHHcCCC--CCHHHHHHHHHhccCCH
Confidence 8643221 12455666777666544
No 60
>PF05729 NACHT: NACHT domain
Probab=96.64 E-value=0.0052 Score=52.08 Aligned_cols=69 Identities=22% Similarity=0.391 Sum_probs=48.9
Q ss_pred CeEEEEEeCCCChHh---------HHHHHhc-CCC-CCCCcEEEEEeCChhh---HhhcCcceEEEccCCChhhHHHHHH
Q 012324 1 MKVLIVFDDVTCFSQ---------LESIIRS-LDW-LTPVSRIIITTRNKQV---LRNWGVRKIYEIEALENHHALELFS 66 (466)
Q Consensus 1 kr~LlvlDd~~~~~~---------~~~l~~~-~~~-~~~gs~IlvTTR~~~v---~~~~~~~~~~~l~~L~~~~~~~Lf~ 66 (466)
++++||+|++++... +..+... ++. ...+.+|+||+|.... .........++++++++++..++++
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 478999999975443 2222222 222 3568999999999866 2334444689999999999999998
Q ss_pred Hhh
Q 012324 67 RHA 69 (466)
Q Consensus 67 ~~~ 69 (466)
++.
T Consensus 161 ~~f 163 (166)
T PF05729_consen 161 KYF 163 (166)
T ss_pred HHh
Confidence 765
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.63 E-value=0.00086 Score=59.66 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=94.9
Q ss_pred CCCCCCCcEEEcCCCCCCc----ccC-------cccccCcccCEEecCCCCCCCccCCC------CCCcccEEeecCccC
Q 012324 260 MPRLNNLVILNLRSGKSLK----SLP-------SGIFNLEFLTKLDLSGCSKLKRLPEI------SSGNVCWLFLRGTAI 322 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~----~~~-------~~l~~l~~L~~L~l~~~~~~~~~~~~------~~~~l~~L~l~~~~i 322 (466)
+.+-++|+..+++.- +++ .++ +.+.+|++|+..+++.|.+....|+. ....+..|.+++|.+
T Consensus 54 ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 54 IANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 344567777777654 332 122 33557888889999988877666642 224678888888877
Q ss_pred cccC-----hh---------hhccCCCCeeeccccccccccc-----cccCCCCCCCEEEecCCCCCCCCC-----cccC
Q 012324 323 EELP-----SS---------IDRLRRLGYLNLSDCKRLKSLP-----SSLCKLKSLKVLNLCGCSNLQRLP-----ECLG 378 (466)
Q Consensus 323 ~~lp-----~~---------l~~l~~L~~L~l~~~~~~~~~p-----~~~~~l~~L~~L~l~~~~~~~~~p-----~~l~ 378 (466)
..+. .. ..+-+.|++.....|++ ...| ..+.....|+++.+-.|.+..... ..+.
T Consensus 133 Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~ 211 (388)
T COG5238 133 GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF 211 (388)
T ss_pred CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH
Confidence 7432 11 22346788777777653 2222 123333577888887655432211 1234
Q ss_pred CCCCCcEEEccCCCccc-----cchhhhccCCCcEeecccCcCC
Q 012324 379 QLSSPIILNLAKTNIER-----IPESIIQLFVLRYLLLSYSERF 417 (466)
Q Consensus 379 ~l~~L~~L~l~~~~l~~-----lp~~l~~l~~L~~L~l~~~~~~ 417 (466)
.+.+|+.|++..|-++. +...+..++.|+.|.+..|.+.
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 56788888888887762 3334566777888888888644
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.0021 Score=57.07 Aligned_cols=83 Identities=28% Similarity=0.263 Sum_probs=47.4
Q ss_pred ccCCCCeeecccc--ccccccccccCCCCCCCEEEecCCCCCC-CCCcccCCCCCCcEEEccCCCccccch----hhhcc
Q 012324 331 RLRRLGYLNLSDC--KRLKSLPSSLCKLKSLKVLNLCGCSNLQ-RLPECLGQLSSPIILNLAKTNIERIPE----SIIQL 403 (466)
Q Consensus 331 ~l~~L~~L~l~~~--~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~l~~lp~----~l~~l 403 (466)
.+++|++|.++.| ...+.++.-..++++|+++++++|.+.. .-...+..+.+|..|++..|..+.+-. .+.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 4556777777666 4444444444555777777777765432 111234556667777777666554322 34556
Q ss_pred CCCcEeeccc
Q 012324 404 FVLRYLLLSY 413 (466)
Q Consensus 404 ~~L~~L~l~~ 413 (466)
++|.+|+-..
T Consensus 143 ~~L~~LD~~d 152 (260)
T KOG2739|consen 143 PSLKYLDGCD 152 (260)
T ss_pred hhhccccccc
Confidence 7777776443
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.00031 Score=63.27 Aligned_cols=131 Identities=27% Similarity=0.289 Sum_probs=80.1
Q ss_pred CCCCCCCCCcEEEcCCCCCCcc--cCcccccCcccCEEecCCCCCCCcc----CCCCCCcccEEeecCccCc----ccCh
Q 012324 258 MLMPRLNNLVILNLRSGKSLKS--LPSGIFNLEFLTKLDLSGCSKLKRL----PEISSGNVCWLFLRGTAIE----ELPS 327 (466)
Q Consensus 258 ~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~l~~~~i~----~lp~ 327 (466)
..+.+-.+|+.|++++|+-... +.-.+.+|+.|..|+++.|...... -.++..+++.|+++|+.=. .+..
T Consensus 228 ~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t 307 (419)
T KOG2120|consen 228 NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST 307 (419)
T ss_pred HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH
Confidence 3466778999999999864332 2233668999999999998765432 1245567778888774321 2222
Q ss_pred hhhccCCCCeeecccccccc-ccccccCCCCCCCEEEecCCCCCCCCCc---ccCCCCCCcEEEccC
Q 012324 328 SIDRLRRLGYLNLSDCKRLK-SLPSSLCKLKSLKVLNLCGCSNLQRLPE---CLGQLSSPIILNLAK 390 (466)
Q Consensus 328 ~l~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~p~---~l~~l~~L~~L~l~~ 390 (466)
-..++++|..||++.|..+. .....+-+++.|++|.++.|+.. .|+ .+...+.|..|++.+
T Consensus 308 L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecc
Confidence 33567777777777764332 22234566777777777766532 233 344555566665543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00018 Score=64.08 Aligned_cols=99 Identities=24% Similarity=0.151 Sum_probs=65.7
Q ss_pred CCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccCh--hhhccCCCCeeec
Q 012324 263 LNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPS--SIDRLRRLGYLNL 340 (466)
Q Consensus 263 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~--~l~~l~~L~~L~l 340 (466)
+.+.+.|++.||.+.+. . ...+++.|++|.|+-|.+..--|-.-+..|+.|||..|.|..+.+ -+.++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH-H-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34556666666643332 1 134677777777777766655555556667777777788876654 4678889999988
Q ss_pred cccccccccccc-----cCCCCCCCEEE
Q 012324 341 SDCKRLKSLPSS-----LCKLKSLKVLN 363 (466)
Q Consensus 341 ~~~~~~~~~p~~-----~~~l~~L~~L~ 363 (466)
..|.-.+..++. +.-+++|+.|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 888777766543 45577888875
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.24 E-value=0.0028 Score=56.27 Aligned_cols=89 Identities=20% Similarity=0.153 Sum_probs=63.6
Q ss_pred hhhccCCCCeeeccccccccccccccCCCCCCCEEEecCC--CCCCCCCcccCCCCCCcEEEccCCCcccc--chhhhcc
Q 012324 328 SIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGC--SNLQRLPECLGQLSSPIILNLAKTNIERI--PESIIQL 403 (466)
Q Consensus 328 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~--~~~~~~p~~l~~l~~L~~L~l~~~~l~~l--p~~l~~l 403 (466)
..-.+..|+.|.+.++..+.. ..+-.+++|++|.++.| ...+.++--...+++|+++++++|++..+ ...+..+
T Consensus 38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 334556677777766543322 23567889999999998 44555655556679999999999998832 1246788
Q ss_pred CCCcEeecccCcCCC
Q 012324 404 FVLRYLLLSYSERFQ 418 (466)
Q Consensus 404 ~~L~~L~l~~~~~~~ 418 (466)
.+|..|++.+|.-.+
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 899999999987554
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.00028 Score=62.91 Aligned_cols=88 Identities=25% Similarity=0.149 Sum_probs=57.8
Q ss_pred cCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch--hhhccCCCcEe
Q 012324 332 LRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE--SIIQLFVLRYL 409 (466)
Q Consensus 332 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L 409 (466)
+.+...|+..+|.+. .+ .-..+|+.|+.|.++-|.+..- ..+..|++|+.|+|..|.|.++-+ .+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCcc-HH-HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 445555666665532 22 1134677777777777554432 246677888888888888876543 56788888899
Q ss_pred ecccCcCCCcCCCC
Q 012324 410 LLSYSERFQSLPKP 423 (466)
Q Consensus 410 ~l~~~~~~~~~p~~ 423 (466)
+|..|+=.+.-+..
T Consensus 94 WL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 94 WLDENPCCGEAGQN 107 (388)
T ss_pred hhccCCcccccchh
Confidence 98888877666654
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.94 E-value=0.0037 Score=55.80 Aligned_cols=159 Identities=15% Similarity=0.071 Sum_probs=110.3
Q ss_pred CCCCCCCcEEEcCCCCCCcccCc----ccccCcccCEEecCCCCCCCccCC----------------CCCCcccEEeecC
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPS----GIFNLEFLTKLDLSGCSKLKRLPE----------------ISSGNVCWLFLRG 319 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~----------------~~~~~l~~L~l~~ 319 (466)
+-+|++|+.++|++|.+....|. .+++-+.|.+|.+.+|.. |.+.. ...+.+++..+..
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 57899999999999987766553 456678899999998753 32221 1123568888888
Q ss_pred ccCcccChh-----hhccCCCCeeeccccccccc-----cccccCCCCCCCEEEecCCCCCCC----CCcccCCCCCCcE
Q 012324 320 TAIEELPSS-----IDRLRRLGYLNLSDCKRLKS-----LPSSLCKLKSLKVLNLCGCSNLQR----LPECLGQLSSPII 385 (466)
Q Consensus 320 ~~i~~lp~~-----l~~l~~L~~L~l~~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~ 385 (466)
|++...|.. +..-..|.++.+..|.+--. +..++..+++|+.|++..|.++.. +...++.++.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 988866542 33335788888888764322 112455678999999999887643 3345678889999
Q ss_pred EEccCCCcc--c---cchhhh--ccCCCcEeecccCcCCCc
Q 012324 386 LNLAKTNIE--R---IPESII--QLFVLRYLLLSYSERFQS 419 (466)
Q Consensus 386 L~l~~~~l~--~---lp~~l~--~l~~L~~L~l~~~~~~~~ 419 (466)
|.+..|-++ . +...+. ..|+|..|...+|.+-+.
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 999988877 2 222233 357889999988865443
No 68
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.78 E-value=0.0084 Score=57.30 Aligned_cols=154 Identities=14% Similarity=0.062 Sum_probs=88.2
Q ss_pred CcEEEEEeCChhhHhhcC--cceEEEccCCChhhHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCceeehhhhhhccc
Q 012324 29 VSRIIITTRNKQVLRNWG--VRKIYEIEALENHHALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVPLALKVLGCFLYE 106 (466)
Q Consensus 29 gs~IlvTTR~~~v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~ 106 (466)
.+-|..|||...+..... ....+++++++.++..+++.+.+...... -..+.+..|++.|+|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~-- 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRV-- 226 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHH--
Confidence 345666777554332211 13578999999999999999887543221 224678899999999995443333221
Q ss_pred CCHHHHHHHHH--HHHhccchhHHHHHHHHHhcCchhhhhhhc-eeeccCCC-ccHHHHHHHHHhcCCCccchhh-hhhc
Q 012324 107 REKEVSESAIN--KLQRILHPSILEVLKISYDSLDNKEKNIFL-DVACFFQG-EDVNLVMKFLNASGFYPEIGIS-VLVD 181 (466)
Q Consensus 107 ~~~~~w~~~~~--~l~~~~~~~~~~~l~~sy~~L~~~~~~~~~-~~~~fp~~-~~~~~l~~~~~~~~~~~~~~~~-~L~~ 181 (466)
..|..... .+....-......+...+..|++..+..+. ....|+.+ .....+...+..+....+..++ .|++
T Consensus 227 ---~~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 227 ---RDFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQ 303 (328)
T ss_pred ---HHHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHH
Confidence 11111100 000011122334455666777777777665 55556554 5566666666444444444455 8888
Q ss_pred ccceEEcC
Q 012324 182 KSLIAIGS 189 (466)
Q Consensus 182 ~sl~~~~~ 189 (466)
.++++...
T Consensus 304 ~~li~~~~ 311 (328)
T PRK00080 304 QGFIQRTP 311 (328)
T ss_pred cCCcccCC
Confidence 88887543
No 69
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.66 E-value=0.061 Score=55.84 Aligned_cols=197 Identities=15% Similarity=0.164 Sum_probs=117.3
Q ss_pred eEEEEEeCCCChHh---HHHHHhcCCCCCCCcEEEEEeCChhh---HhhcCcceEEEcc----CCChhhHHHHHHHhhcC
Q 012324 2 KVLIVFDDVTCFSQ---LESIIRSLDWLTPVSRIIITTRNKQV---LRNWGVRKIYEIE----ALENHHALELFSRHAFK 71 (466)
Q Consensus 2 r~LlvlDd~~~~~~---~~~l~~~~~~~~~gs~IlvTTR~~~v---~~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~ 71 (466)
...+||||.--..+ -..+.-.++....+=..|||||+.-- +..---....+++ .++.+|+-++|.....
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~- 208 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS- 208 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-
Confidence 46899999743221 22222223334567789999999832 2211111233333 5889999999987541
Q ss_pred CCCCCchHHHHHHHHHHHhCCCceeehhhhhhcccC-CHHHHHHHHHHHHhccchhHHH-HHHHHHhcCchhhhhhhcee
Q 012324 72 RNHPDVGYEKLSSKVMKYAQGVPLALKVLGCFLYER-EKEVSESAINKLQRILHPSILE-VLKISYDSLDNKEKNIFLDV 149 (466)
Q Consensus 72 ~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~-~l~~sy~~L~~~~~~~~~~~ 149 (466)
. +-.+.-++.+.+..+|.+-|+..++=.++.+ +.++-...++.. .+.+.. ...-.++.||++.|..++-+
T Consensus 209 -l---~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~----~~~l~dYL~eeVld~Lp~~l~~FLl~~ 280 (894)
T COG2909 209 -L---PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGA----ASHLSDYLVEEVLDRLPPELRDFLLQT 280 (894)
T ss_pred -C---CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccch----HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 1224456788889999999998888777732 333222222211 111111 12335689999999999988
Q ss_pred eccCCCccHHHHHHHHHhcCCCccchhhhhhcccceEE---cCCCeEEecHHHHHHHHHHHhhh
Q 012324 150 ACFFQGEDVNLVMKFLNASGFYPEIGISVLVDKSLIAI---GSYNKIRMHDLLQELGREIVRQE 210 (466)
Q Consensus 150 ~~fp~~~~~~~l~~~~~~~~~~~~~~~~~L~~~sl~~~---~~~~~~~~hdlv~~~~~~~~~~~ 210 (466)
++++.-. ..+...... .-.....++.|.+++++-. +....|+.|.++.+|.+.....+
T Consensus 281 svl~~f~--~eL~~~Ltg-~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 281 SVLSRFN--DELCNALTG-EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HhHHHhh--HHHHHHHhc-CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 8885311 112222222 1223334788888887652 24678999999999998777653
No 70
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.44 E-value=0.052 Score=48.77 Aligned_cols=95 Identities=23% Similarity=0.280 Sum_probs=50.7
Q ss_pred eEEEEEeCCCChH-----------hHHHHHhcCCCCCCCcEEEEEeCChhhHhh--------cCcceEEEccCCChhhHH
Q 012324 2 KVLIVFDDVTCFS-----------QLESIIRSLDWLTPVSRIIITTRNKQVLRN--------WGVRKIYEIEALENHHAL 62 (466)
Q Consensus 2 r~LlvlDd~~~~~-----------~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~--------~~~~~~~~l~~L~~~~~~ 62 (466)
+++||+||+.... .+..+........+.+ +|+++.+..+... .+....+.+++|+.++++
T Consensus 119 ~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~ 197 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAR 197 (234)
T ss_dssp CEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHH
T ss_pred cEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHH
Confidence 5899999985444 1222333333333444 5555555555433 122346999999999999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHHhCCCceeeh
Q 012324 63 ELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 63 ~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 98 (466)
+++...+-..... +......++|...+||.|..+.
T Consensus 198 ~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 198 EFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp HHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 9999876333111 1235566899999999996543
No 71
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.40 E-value=0.034 Score=52.58 Aligned_cols=154 Identities=17% Similarity=0.102 Sum_probs=88.4
Q ss_pred CcEEEEEeCChhhHhhc--CcceEEEccCCChhhHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCceeehhhhhhccc
Q 012324 29 VSRIIITTRNKQVLRNW--GVRKIYEIEALENHHALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVPLALKVLGCFLYE 106 (466)
Q Consensus 29 gs~IlvTTR~~~v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~ 106 (466)
.+-|..||+...+.... .....+++++++.+|..+++.+.+...... -..+.+..|++.|+|.|-.+..+...+
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~-- 205 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRV-- 205 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHH--
Confidence 45556677765443321 113478999999999999999887532221 225567889999999996654444322
Q ss_pred CCHHHHHHHHHH----HHhccchhHHHHHHHHHhcCchhhhhhhc-eeeccCCC-ccHHHHHHHHHhcCCCccchhh-hh
Q 012324 107 REKEVSESAINK----LQRILHPSILEVLKISYDSLDNKEKNIFL-DVACFFQG-EDVNLVMKFLNASGFYPEIGIS-VL 179 (466)
Q Consensus 107 ~~~~~w~~~~~~----l~~~~~~~~~~~l~~sy~~L~~~~~~~~~-~~~~fp~~-~~~~~l~~~~~~~~~~~~~~~~-~L 179 (466)
|..+... +....-......+...|..++.+.+..+. ....++.+ ..+..+...+..........++ .|
T Consensus 206 -----~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~L 280 (305)
T TIGR00635 206 -----RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYL 280 (305)
T ss_pred -----HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHH
Confidence 1111000 00000012222245567778777766665 44555443 5566666666554444455466 69
Q ss_pred hcccceEEcCCC
Q 012324 180 VDKSLIAIGSYN 191 (466)
Q Consensus 180 ~~~sl~~~~~~~ 191 (466)
+++++++....+
T Consensus 281 i~~~li~~~~~g 292 (305)
T TIGR00635 281 LQIGFLQRTPRG 292 (305)
T ss_pred HHcCCcccCCch
Confidence 999999755433
No 72
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.0063 Score=55.06 Aligned_cols=113 Identities=26% Similarity=0.278 Sum_probs=70.3
Q ss_pred CcccEEeecCccCc---ccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCC-CCcccCCCCCCcE
Q 012324 310 GNVCWLFLRGTAIE---ELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQR-LPECLGQLSSPII 385 (466)
Q Consensus 310 ~~l~~L~l~~~~i~---~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~ 385 (466)
..++.|++.+|.|+ ++..-+.++++|++|+++.|.....+...=..+.+|+.|-+.|..+... .-..+..+++++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 45688999998887 4455567889999999998875444322113567888888877554332 2234566778888
Q ss_pred EEccCCCcccc--ch-----------hhhccCCCcEeecccCcCCCcCCC
Q 012324 386 LNLAKTNIERI--PE-----------SIIQLFVLRYLLLSYSERFQSLPK 422 (466)
Q Consensus 386 L~l~~~~l~~l--p~-----------~l~~l~~L~~L~l~~~~~~~~~p~ 422 (466)
|.++.|+++.+ -. .+..++++..++.+-|+..+..|.
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 88887765411 11 123344555555555565666665
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.31 E-value=0.0078 Score=31.78 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=9.8
Q ss_pred CcEEEccCCCccccchhhh
Q 012324 383 PIILNLAKTNIERIPESII 401 (466)
Q Consensus 383 L~~L~l~~~~l~~lp~~l~ 401 (466)
|+.|++++|+++.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 74
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.06 E-value=0.3 Score=45.15 Aligned_cols=103 Identities=14% Similarity=0.198 Sum_probs=64.3
Q ss_pred CeEEEEEeCCCChH--hHHHHHhcCC---CCCCCcEEEEEeCChhhHhhcC----------cceEEEccCCChhhHHHHH
Q 012324 1 MKVLIVFDDVTCFS--QLESIIRSLD---WLTPVSRIIITTRNKQVLRNWG----------VRKIYEIEALENHHALELF 65 (466)
Q Consensus 1 kr~LlvlDd~~~~~--~~~~l~~~~~---~~~~gs~IlvTTR~~~v~~~~~----------~~~~~~l~~L~~~~~~~Lf 65 (466)
++.++|+||++... .++.+..... +......|++|... +...... ....+++++++.+|..+++
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 46799999998754 4555543211 11122234555443 3221111 1246889999999999998
Q ss_pred HHhhcCCC-C-CCchHHHHHHHHHHHhCCCceeehhhhhhc
Q 012324 66 SRHAFKRN-H-PDVGYEKLSSKVMKYAQGVPLALKVLGCFL 104 (466)
Q Consensus 66 ~~~~~~~~-~-~~~~~~~~~~~i~~~c~glPlai~~~~~~l 104 (466)
........ . ...-..+..+.|++.++|.|..|..++..+
T Consensus 202 ~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 202 EHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 87763211 1 112235788899999999999998888665
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.88 E-value=0.13 Score=41.31 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=13.3
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCC
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSG 297 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 297 (466)
|.++++|+.+.+... ....-...+..+.+|+.+.+..
T Consensus 8 F~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETST---EE-TTTTTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECCC-eeEeChhhcccccccccccccc
Confidence 455555666555432 2222222344444555555543
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.71 E-value=0.014 Score=30.73 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=7.3
Q ss_pred cEEeecCccCcccChhh
Q 012324 313 CWLFLRGTAIEELPSSI 329 (466)
Q Consensus 313 ~~L~l~~~~i~~lp~~l 329 (466)
++|++++|+++.+|+++
T Consensus 3 ~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 3 EYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp SEEEETSSEESEEGTTT
T ss_pred cEEECCCCcCEeCChhh
Confidence 33444444444444443
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.33 E-value=0.15 Score=41.02 Aligned_cols=96 Identities=14% Similarity=0.200 Sum_probs=40.2
Q ss_pred hhccCCCCeeeccccccccccc-cccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCC
Q 012324 329 IDRLRRLGYLNLSDCKRLKSLP-SSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVL 406 (466)
Q Consensus 329 l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L 406 (466)
+..+++|+.+.+..+ ...++ ..+..+++|+.+.+.+ .....-...+..+++|+.+.+..+ +..++. .+.+. +|
T Consensus 31 F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred ccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 555666777776652 33333 3355666777777754 332222345666777777777654 554443 45555 77
Q ss_pred cEeecccCcCCCcCCCCeEeccCCCCc
Q 012324 407 RYLLLSYSERFQSLPKPLFLARGCLAL 433 (466)
Q Consensus 407 ~~L~l~~~~~~~~~p~~~~~l~~~~~L 433 (466)
+.+.+..+ ...++... ..+|++|
T Consensus 106 ~~i~~~~~--~~~i~~~~--F~~~~~l 128 (129)
T PF13306_consen 106 KEINIPSN--ITKIEENA--FKNCTKL 128 (129)
T ss_dssp -EEE-TTB---SS----G--GG-----
T ss_pred eEEEECCC--ccEECCcc--ccccccC
Confidence 77766542 33444332 2355444
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.50 E-value=0.051 Score=26.54 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=4.2
Q ss_pred CcEEEccCCCccc
Q 012324 383 PIILNLAKTNIER 395 (466)
Q Consensus 383 L~~L~l~~~~l~~ 395 (466)
|+.|++++|+++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 79
>COG3903 Predicted ATPase [General function prediction only]
Probab=93.33 E-value=0.03 Score=53.28 Aligned_cols=204 Identities=19% Similarity=0.228 Sum_probs=128.7
Q ss_pred CeEEEEEeCCCChHh-HHHHHhcCCCCCCCcEEEEEeCChhhHhhcCcceEEEccCCChh-hHHHHHHHhhcCCC---CC
Q 012324 1 MKVLIVFDDVTCFSQ-LESIIRSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEIEALENH-HALELFSRHAFKRN---HP 75 (466)
Q Consensus 1 kr~LlvlDd~~~~~~-~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~~---~~ 75 (466)
+|.++|+||.-..-+ ...+.-.+-.+...-.|+.|+|+... ........++.|+.- ++.++|.-.+.... ..
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 356778887754332 22222222223444568888887743 344567888888776 78899877663211 11
Q ss_pred CchHHHHHHHHHHHhCCCceeehhhhhhcccCCHHHHHHHHHH----HHhc------cchhHHHHHHHHHhcCchhhhhh
Q 012324 76 DVGYEKLSSKVMKYAQGVPLALKVLGCFLYEREKEVSESAINK----LQRI------LHPSILEVLKISYDSLDNKEKNI 145 (466)
Q Consensus 76 ~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~----l~~~------~~~~~~~~l~~sy~~L~~~~~~~ 145 (466)
...-...+.+|.++.+|.|++|...++..++......-..++. ++.. ........+.+||.-|+.-.+..
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 2233567788999999999999999988887543332222221 2222 13556788999999999999999
Q ss_pred hceeeccCCCccHHHHHHHHHhcCCCc--cch-----hhhhhcccceEEcC---CCeEEecHHHHHHHHHHHhh
Q 012324 146 FLDVACFFQGEDVNLVMKFLNASGFYP--EIG-----ISVLVDKSLIAIGS---YNKIRMHDLLQELGREIVRQ 209 (466)
Q Consensus 146 ~~~~~~fp~~~~~~~l~~~~~~~~~~~--~~~-----~~~L~~~sl~~~~~---~~~~~~hdlv~~~~~~~~~~ 209 (466)
|.-++.|...|+.. ...|.+.|-.. ..+ +-.+++++++.... ...|+.-+.+|.|+.....+
T Consensus 245 ~~rLa~~~g~f~~~--l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 245 FGRLAVFVGGFDLG--LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred hcchhhhhhhhccc--HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999998887766 33444444332 222 55667777776442 23567777777777655543
No 80
>PRK09087 hypothetical protein; Validated
Probab=93.32 E-value=0.36 Score=43.28 Aligned_cols=91 Identities=11% Similarity=0.119 Sum_probs=58.3
Q ss_pred EEEEeCCCC----hHhHHHHHhcCCCCCCCcEEEEEeCC---------hhhHhhcCcceEEEccCCChhhHHHHHHHhhc
Q 012324 4 LIVFDDVTC----FSQLESIIRSLDWLTPVSRIIITTRN---------KQVLRNWGVRKIYEIEALENHHALELFSRHAF 70 (466)
Q Consensus 4 LlvlDd~~~----~~~~~~l~~~~~~~~~gs~IlvTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 70 (466)
++++||+.. .+++-.+..... ..|..||+|++. ++....+....+++++++++++-..++++.+-
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 688999943 233333333333 346678988873 44555566778999999999999999998874
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCceeeh
Q 012324 71 KRNHPDVGYEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 71 ~~~~~~~~~~~~~~~i~~~c~glPlai~ 98 (466)
...- .-.+++..-|++.+.|-.-++.
T Consensus 168 ~~~~--~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 168 DRQL--YVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HcCC--CCCHHHHHHHHHHhhhhHHHHH
Confidence 3211 1125566667777766554433
No 81
>COG3899 Predicted ATPase [General function prediction only]
Probab=91.97 E-value=0.59 Score=50.55 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=87.4
Q ss_pred cceEEEccCCChhhHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCceeehhhhhhcccC-------CHHHHHHHHHHH
Q 012324 47 VRKIYEIEALENHHALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVPLALKVLGCFLYER-------EKEVSESAINKL 119 (466)
Q Consensus 47 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-------~~~~w~~~~~~l 119 (466)
....+.+.+|+..+...+.......... ...+....|++|-.|.|+-+..+-..+... +...|+.-...+
T Consensus 210 ~i~~I~L~PL~~~d~~~lV~~~l~~~~~---~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i 286 (849)
T COG3899 210 NITTITLAPLSRADTNQLVAATLGCTKL---LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL 286 (849)
T ss_pred ceeEEecCcCchhhHHHHHHHHhCCccc---ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc
Confidence 3468999999999999999887633222 235567889999999999998887777652 355566555444
Q ss_pred Hhcc-chhHHHHHHHHHhcCchhhhhhhceeeccCCCccHHHHHHHHHh
Q 012324 120 QRIL-HPSILEVLKISYDSLDNKEKNIFLDVACFFQGEDVNLVMKFLNA 167 (466)
Q Consensus 120 ~~~~-~~~~~~~l~~sy~~L~~~~~~~~~~~~~fp~~~~~~~l~~~~~~ 167 (466)
.... .+.+...+..-.+.||...+......|++...++.+-+...+..
T Consensus 287 ~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F~l~~La~l~~~ 335 (849)
T COG3899 287 GILATTDAVVEFLAARLQKLPGTTREVLKAAACIGNRFDLDTLAALAED 335 (849)
T ss_pred CCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCccCCHHHHHHHHhh
Confidence 3332 23356678889999999999999999999988887766665543
No 82
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.80 E-value=0.43 Score=42.74 Aligned_cols=95 Identities=14% Similarity=0.245 Sum_probs=54.3
Q ss_pred EEEEeCCCChH---hH-HHHHhcCCC-CCCCcEEEEEeCChh---------hHhhcCcceEEEccCCChhhHHHHHHHhh
Q 012324 4 LIVFDDVTCFS---QL-ESIIRSLDW-LTPVSRIIITTRNKQ---------VLRNWGVRKIYEIEALENHHALELFSRHA 69 (466)
Q Consensus 4 LlvlDd~~~~~---~~-~~l~~~~~~-~~~gs~IlvTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 69 (466)
+|||||+.... +| +.+...+.. ...+.+||+||+... +...+.....++++++++++...++.+.+
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 78999997543 23 233332221 123347888887532 22223334689999999999999987755
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCceeehhh
Q 012324 70 FKRNHPDVGYEKLSSKVMKYAQGVPLALKVL 100 (466)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 100 (466)
-..... -..+..+.+++.+.|.|..+..+
T Consensus 173 ~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 173 ARRGLQ--LPDEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred HHcCCC--CCHHHHHHHHHhccCCHHHHHHH
Confidence 221111 12344566666677776554433
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.41 E-value=0.037 Score=55.92 Aligned_cols=126 Identities=27% Similarity=0.263 Sum_probs=59.0
Q ss_pred cCcccCEEecCCCCCCCcc---CC-CCCCcccEEeecCc--cCccc----ChhhhccCCCCeeeccccccccc-cccccC
Q 012324 286 NLEFLTKLDLSGCSKLKRL---PE-ISSGNVCWLFLRGT--AIEEL----PSSIDRLRRLGYLNLSDCKRLKS-LPSSLC 354 (466)
Q Consensus 286 ~l~~L~~L~l~~~~~~~~~---~~-~~~~~l~~L~l~~~--~i~~l----p~~l~~l~~L~~L~l~~~~~~~~-~p~~~~ 354 (466)
.+++|+.|.+.+|...... +. .....++.|+++++ .+... ......+.+|+.|++.++...+. .-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4688888888887655431 21 22345666666652 11111 12234456666666666552221 111122
Q ss_pred -CCCCCCEEEecCCCC-CCCC-CcccCCCCCCcEEEccCCCcc---ccchhhhccCCCcEeec
Q 012324 355 -KLKSLKVLNLCGCSN-LQRL-PECLGQLSSPIILNLAKTNIE---RIPESIIQLFVLRYLLL 411 (466)
Q Consensus 355 -~l~~L~~L~l~~~~~-~~~~-p~~l~~l~~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~l 411 (466)
.+++|+.|.+.+|.. +... -.....+++|++|+++.+... .+.....++++|+.|.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 255666666555542 2211 112234555666666644432 23223333444554443
No 84
>PRK08727 hypothetical protein; Validated
Probab=91.27 E-value=0.73 Score=41.55 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=53.2
Q ss_pred EEEEEeCCCCh---HhHHHH-HhcCCC-CCCCcEEEEEeCCh---------hhHhhcCcceEEEccCCChhhHHHHHHHh
Q 012324 3 VLIVFDDVTCF---SQLESI-IRSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEIEALENHHALELFSRH 68 (466)
Q Consensus 3 ~LlvlDd~~~~---~~~~~l-~~~~~~-~~~gs~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 68 (466)
-+|||||+... .+|... ...+.. ...|..||+||+.. ++.+.+....+++++++++++-.++++++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 37999998633 223322 221111 12455699999843 22333334568999999999999999987
Q ss_pred hcCCCCCCchHHHHHHHHHHHhCCCc
Q 012324 69 AFKRNHPDVGYEKLSSKVMKYAQGVP 94 (466)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~~~c~glP 94 (466)
+....- .-..+...-|++.++|-.
T Consensus 175 a~~~~l--~l~~e~~~~La~~~~rd~ 198 (233)
T PRK08727 175 AQRRGL--ALDEAAIDWLLTHGEREL 198 (233)
T ss_pred HHHcCC--CCCHHHHHHHHHhCCCCH
Confidence 743221 112445566666666443
No 85
>PF13173 AAA_14: AAA domain
Probab=90.77 E-value=0.39 Score=38.68 Aligned_cols=60 Identities=22% Similarity=0.216 Sum_probs=46.0
Q ss_pred eEEEEEeCCCChHhHHHHHhcCCCCCCCcEEEEEeCChhhHhhc------CcceEEEccCCChhhH
Q 012324 2 KVLIVFDDVTCFSQLESIIRSLDWLTPVSRIIITTRNKQVLRNW------GVRKIYEIEALENHHA 61 (466)
Q Consensus 2 r~LlvlDd~~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~------~~~~~~~l~~L~~~~~ 61 (466)
+.+++||++....+|......+.+..+..+|++|+.+....... +-...++|.+|+-.|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 46899999999888888887777666678999999988766331 1224789999987763
No 86
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=90.58 E-value=2.2 Score=36.90 Aligned_cols=87 Identities=16% Similarity=0.305 Sum_probs=61.2
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCCh-hhHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|+|++... +..+.+...+.+....+.+|++|++. .+.... .....+++.+++.++..+.+.+. + .+
T Consensus 97 ~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~---g--i~- 170 (188)
T TIGR00678 97 RRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ---G--IS- 170 (188)
T ss_pred eEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc---C--CC-
Confidence 347899998643 35778888877666677777777654 222211 22358999999999999888876 1 22
Q ss_pred hHHHHHHHHHHHhCCCcee
Q 012324 78 GYEKLSSKVMKYAQGVPLA 96 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPla 96 (466)
++.+..|++.++|.|..
T Consensus 171 --~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 171 --EEAAELLLALAGGSPGA 187 (188)
T ss_pred --HHHHHHHHHHcCCCccc
Confidence 45688899999998853
No 87
>PRK06620 hypothetical protein; Validated
Probab=89.99 E-value=1.9 Score=38.30 Aligned_cols=84 Identities=8% Similarity=0.102 Sum_probs=50.6
Q ss_pred EEEEeCCCChH--hHHHHHhcCCCCCCCcEEEEEeCCh-------hhHhhcCcceEEEccCCChhhHHHHHHHhhcCC-C
Q 012324 4 LIVFDDVTCFS--QLESIIRSLDWLTPVSRIIITTRNK-------QVLRNWGVRKIYEIEALENHHALELFSRHAFKR-N 73 (466)
Q Consensus 4 LlvlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~-------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~ 73 (466)
++++||+.... ..-.+...+. ..|..||+|++.. +..+.+...-+++++++++++-..++++.+-.. -
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV 165 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC
Confidence 68899996432 2222322222 3466789988754 233334555689999999999888888776321 1
Q ss_pred CCCchHHHHHHHHHHHhCC
Q 012324 74 HPDVGYEKLSSKVMKYAQG 92 (466)
Q Consensus 74 ~~~~~~~~~~~~i~~~c~g 92 (466)
..+ +++..-|++.+.|
T Consensus 166 ~l~---~ev~~~L~~~~~~ 181 (214)
T PRK06620 166 TIS---RQIIDFLLVNLPR 181 (214)
T ss_pred CCC---HHHHHHHHHHccC
Confidence 112 4555556665544
No 88
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=89.91 E-value=1.7 Score=41.20 Aligned_cols=89 Identities=12% Similarity=0.221 Sum_probs=62.1
Q ss_pred EEEEeCC--CChHhHHHHHhcCCCCCCCcEEEEEeCChhhH-hh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDV--TCFSQLESIIRSLDWLTPVSRIIITTRNKQVL-RN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~--~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
++|+|++ .+.+.++.++..+.+-..++.+|++|.+.+.. .. ..-...++++++++++....+.+.. . ..+
T Consensus 96 v~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~-~--~~~--- 169 (313)
T PRK05564 96 VIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKY-N--DIK--- 169 (313)
T ss_pred EEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHh-c--CCC---
Confidence 4555554 56667999999998888899999998766422 11 1223689999999999988776653 1 111
Q ss_pred HHHHHHHHHHhCCCceeeh
Q 012324 80 EKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 80 ~~~~~~i~~~c~glPlai~ 98 (466)
.+.+++++..++|.|..+.
T Consensus 170 ~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 170 EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 3446778899999886543
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.83 E-value=1.2 Score=40.21 Aligned_cols=89 Identities=19% Similarity=0.279 Sum_probs=54.0
Q ss_pred EEEEeCCCCh---HhHHHHH-hcCCC-CCCC-cEEEEEeCCh---------hhHhhcCcceEEEccCCChhhHHHHHHHh
Q 012324 4 LIVFDDVTCF---SQLESII-RSLDW-LTPV-SRIIITTRNK---------QVLRNWGVRKIYEIEALENHHALELFSRH 68 (466)
Q Consensus 4 LlvlDd~~~~---~~~~~l~-~~~~~-~~~g-s~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 68 (466)
+++|||+... .+|+... ..+.. ...| .++|+||+.. ++.+.+....+++++++++++-.++++++
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 7899999542 3344322 11111 1233 3688888754 44455566679999999999999999886
Q ss_pred hcCCCCCCchHHHHHHHHHHHhCCCc
Q 012324 69 AFKRNHPDVGYEKLSSKVMKYAQGVP 94 (466)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~~~c~glP 94 (466)
+....- .-.+++..-|++.+.|-.
T Consensus 180 a~~~~~--~l~~~v~~~L~~~~~~d~ 203 (235)
T PRK08084 180 ARLRGF--ELPEDVGRFLLKRLDREM 203 (235)
T ss_pred HHHcCC--CCCHHHHHHHHHhhcCCH
Confidence 643221 122455666766666543
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.39 E-value=0.35 Score=26.48 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=13.3
Q ss_pred CCCCcEEEccCCCccccchh
Q 012324 380 LSSPIILNLAKTNIERIPES 399 (466)
Q Consensus 380 l~~L~~L~l~~~~l~~lp~~ 399 (466)
+++|+.|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35667777777777776654
No 91
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.39 E-value=0.35 Score=26.48 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=13.3
Q ss_pred CCCCcEEEccCCCccccchh
Q 012324 380 LSSPIILNLAKTNIERIPES 399 (466)
Q Consensus 380 l~~L~~L~l~~~~l~~lp~~ 399 (466)
+++|+.|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35667777777777776654
No 92
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.71 E-value=0.096 Score=52.85 Aligned_cols=156 Identities=26% Similarity=0.324 Sum_probs=82.4
Q ss_pred CCCCcEEEcCCCCCCcc--cCcccccCcccCEEecCCC-CCCCccC------CCCCCcccEEeecCcc-Cccc-Chhh-h
Q 012324 263 LNNLVILNLRSGKSLKS--LPSGIFNLEFLTKLDLSGC-SKLKRLP------EISSGNVCWLFLRGTA-IEEL-PSSI-D 330 (466)
Q Consensus 263 l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~~------~~~~~~l~~L~l~~~~-i~~l-p~~l-~ 330 (466)
++.|+.+.+.++..... +-.....+++|+.|++++| ......+ .....+++.|+++++. ++.. -..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45666666665543332 2233445666777776662 2222111 1122355666666655 4422 1222 3
Q ss_pred ccCCCCeeecccccc-ccc-cccccCCCCCCCEEEecCCCCCCC--CCcccCCCCCCcEEEccCCC----cccc-chhhh
Q 012324 331 RLRRLGYLNLSDCKR-LKS-LPSSLCKLKSLKVLNLCGCSNLQR--LPECLGQLSSPIILNLAKTN----IERI-PESII 401 (466)
Q Consensus 331 ~l~~L~~L~l~~~~~-~~~-~p~~~~~l~~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~l~~~~----l~~l-p~~l~ 401 (466)
.+++|++|.+.+|.. ... +-.....+++|++|++++|..... +.....++++|+.|.+.... ++.. -..+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 478999999888763 222 122235688899999999877532 23334557777776654332 2211 01122
Q ss_pred ccC--CCcEeecccCcCCC
Q 012324 402 QLF--VLRYLLLSYSERFQ 418 (466)
Q Consensus 402 ~l~--~L~~L~l~~~~~~~ 418 (466)
... .+..+.+.+|+.++
T Consensus 347 ~~~~d~~~~~~~~~~~~l~ 365 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLT 365 (482)
T ss_pred ccCchhHhHHHHhcCCCcc
Confidence 222 56677777776543
No 93
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=87.94 E-value=6.9 Score=37.89 Aligned_cols=92 Identities=9% Similarity=0.122 Sum_probs=61.4
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChhh-Hhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQV-LRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
-++|+||+... ...+.|...+.+-..++.+|++|.+.+. ... ..-...+.+.+++.++..+.+...... ..
T Consensus 143 kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~-- 217 (365)
T PRK07471 143 RVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP-- 217 (365)
T ss_pred EEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC--
Confidence 47899998644 3467777776655566777777776642 211 222468999999999999999875411 11
Q ss_pred HHHHHHHHHHHhCCCceeehhh
Q 012324 79 YEKLSSKVMKYAQGVPLALKVL 100 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~~~ 100 (466)
.+....+++.++|.|.....+
T Consensus 218 -~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 218 -DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred -HHHHHHHHHHcCCCHHHHHHH
Confidence 122267889999999865444
No 94
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.69 E-value=0.25 Score=47.17 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=60.3
Q ss_pred hccCCCCeeeccccccccc--cccccCCCCCCCEEEecCCCCCCCC-----CcccCCCCCCcEEEccCCCcc--ccchhh
Q 012324 330 DRLRRLGYLNLSDCKRLKS--LPSSLCKLKSLKVLNLCGCSNLQRL-----PECLGQLSSPIILNLAKTNIE--RIPESI 400 (466)
Q Consensus 330 ~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~-----p~~l~~l~~L~~L~l~~~~l~--~lp~~l 400 (466)
.+.++|+.+++..|..... +..--.+++.|+.+.+++|...... ...-..+..|+.+.+.++... ...+.+
T Consensus 343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 3566777777776643322 2222346677888877777654322 223344567777777777665 344556
Q ss_pred hccCCCcEeecccCcCCCcCCCCeEeccCCCCccc
Q 012324 401 IQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEP 435 (466)
Q Consensus 401 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~ 435 (466)
...++|+.+++-.|.....-|..-+ -.+|++++.
T Consensus 423 ~~c~~Leri~l~~~q~vtk~~i~~~-~~~lp~i~v 456 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDVTKEAISRF-ATHLPNIKV 456 (483)
T ss_pred hhCcccceeeeechhhhhhhhhHHH-HhhCcccee
Confidence 6777888887777754433332211 235555554
No 95
>PRK05642 DNA replication initiation factor; Validated
Probab=87.67 E-value=2.1 Score=38.61 Aligned_cols=89 Identities=10% Similarity=0.243 Sum_probs=52.6
Q ss_pred EEEEeCCCCh---HhHHH-HHhcCCC-CCCCcEEEEEeCChh---------hHhhcCcceEEEccCCChhhHHHHHHHhh
Q 012324 4 LIVFDDVTCF---SQLES-IIRSLDW-LTPVSRIIITTRNKQ---------VLRNWGVRKIYEIEALENHHALELFSRHA 69 (466)
Q Consensus 4 LlvlDd~~~~---~~~~~-l~~~~~~-~~~gs~IlvTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 69 (466)
++|+||+... .+|+. +...+.. ...|..||+||+... +.+.+....+++++++++++-..++++++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6889999532 24443 3333211 134667888887542 12223345689999999999999998766
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCc
Q 012324 70 FKRNHPDVGYEKLSSKVMKYAQGVP 94 (466)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glP 94 (466)
....- . -.+++..-|++.+.|-.
T Consensus 180 ~~~~~-~-l~~ev~~~L~~~~~~d~ 202 (234)
T PRK05642 180 SRRGL-H-LTDEVGHFILTRGTRSM 202 (234)
T ss_pred HHcCC-C-CCHHHHHHHHHhcCCCH
Confidence 43211 1 11455666666665543
No 96
>PRK13342 recombination factor protein RarA; Reviewed
Probab=86.26 E-value=2.9 Score=41.36 Aligned_cols=97 Identities=13% Similarity=0.196 Sum_probs=59.4
Q ss_pred CeEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEE--eCChhhH---hhcCcceEEEccCCChhhHHHHHHHhhcCC-
Q 012324 1 MKVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIIT--TRNKQVL---RNWGVRKIYEIEALENHHALELFSRHAFKR- 72 (466)
Q Consensus 1 kr~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvT--TR~~~v~---~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~- 72 (466)
++.++++|+++.. .+.+.+...+. .|..+++. |.+.... ....-...+.+++++.++...++.+.....
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~ 168 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKE 168 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhh
Confidence 3568999999854 35666666654 35555553 3433211 111223589999999999999998865321
Q ss_pred CCCCchHHHHHHHHHHHhCCCceeehhh
Q 012324 73 NHPDVGYEKLSSKVMKYAQGVPLALKVL 100 (466)
Q Consensus 73 ~~~~~~~~~~~~~i~~~c~glPlai~~~ 100 (466)
.....-..+..+.|++.|+|-+..+..+
T Consensus 169 ~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 169 RGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred cCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 1110122456777888999988665443
No 97
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=85.04 E-value=5.9 Score=40.15 Aligned_cols=94 Identities=13% Similarity=0.189 Sum_probs=63.1
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEE-EeCChhhHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIII-TTRNKQVLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~Ilv-TTR~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|+|+++.. ..++.|...+.+....+++|+ ||+...+.... .....+++++++.++..+.+.+.+-..+..
T Consensus 129 ~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~-- 206 (507)
T PRK06645 129 HKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK-- 206 (507)
T ss_pred cEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--
Confidence 457899999864 458888877776556666655 44444544332 223579999999999999999887433221
Q ss_pred hHHHHHHHHHHHhCCCceee
Q 012324 78 GYEKLSSKVMKYAQGVPLAL 97 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai 97 (466)
-..+....|++.++|-+-.+
T Consensus 207 ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 207 TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred CCHHHHHHHHHHcCCCHHHH
Confidence 12455677888898876443
No 98
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=84.28 E-value=14 Score=36.19 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=73.1
Q ss_pred eEEEEEeCCCChH------hHHHHHhcCCCCCCCcE--EEEEeCChhhHhhcC-------cceEEEccCCChhhHHHHHH
Q 012324 2 KVLIVFDDVTCFS------QLESIIRSLDWLTPVSR--IIITTRNKQVLRNWG-------VRKIYEIEALENHHALELFS 66 (466)
Q Consensus 2 r~LlvlDd~~~~~------~~~~l~~~~~~~~~gs~--IlvTTR~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~ 66 (466)
..+||||+++... .+..+...+.. ..+++ ||.++...++..... ....+.+++++.++..+++.
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~ 217 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILK 217 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHH
Confidence 4789999997632 24444433322 22333 566666654433221 12467999999999999998
Q ss_pred HhhcC---CCCCC-chHHHHHHHHHHHhCCCceeehhhhhhc--c---cC---CHHHHHHHHHHHHhccchhHHHHHHHH
Q 012324 67 RHAFK---RNHPD-VGYEKLSSKVMKYAQGVPLALKVLGCFL--Y---ER---EKEVSESAINKLQRILHPSILEVLKIS 134 (466)
Q Consensus 67 ~~~~~---~~~~~-~~~~~~~~~i~~~c~glPlai~~~~~~l--~---~~---~~~~w~~~~~~l~~~~~~~~~~~l~~s 134 (466)
.++-. ....+ ...+.+++......|..+.|+..+-... + +. +.+....+.+.+. .....-.
T Consensus 218 ~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~ 290 (394)
T PRK00411 218 DRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEV 290 (394)
T ss_pred HHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHH
Confidence 87632 11222 2222233333232444666655443221 1 11 3344444444431 1233456
Q ss_pred HhcCchhhhhhhceee
Q 012324 135 YDSLDNKEKNIFLDVA 150 (466)
Q Consensus 135 y~~L~~~~~~~~~~~~ 150 (466)
+..||.+.|..+.-++
T Consensus 291 ~~~L~~~~k~~L~ai~ 306 (394)
T PRK00411 291 LRTLPLHEKLLLRAIV 306 (394)
T ss_pred HhcCCHHHHHHHHHHH
Confidence 7788887776655443
No 99
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.03 E-value=6.4 Score=38.16 Aligned_cols=93 Identities=11% Similarity=0.173 Sum_probs=62.0
Q ss_pred EEEEEeCCCChH--hHHHHHhcCCCCCCCcEEEEEeCChh-hHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCFS--QLESIIRSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
-++|+|++.... .++.+...+.+.....++|++|.+.+ +.... +-...+++++++.++..+.+.+.+-..... -
T Consensus 121 kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~--i 198 (363)
T PRK14961 121 KVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID--T 198 (363)
T ss_pred eEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC--C
Confidence 379999997554 47778877766566667777775542 32221 223589999999999999888766332211 1
Q ss_pred HHHHHHHHHHHhCCCceee
Q 012324 79 YEKLSSKVMKYAQGVPLAL 97 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai 97 (466)
..+.+..|++.++|-|-.+
T Consensus 199 ~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 199 DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred CHHHHHHHHHHcCCCHHHH
Confidence 2456677888899877543
No 100
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=83.87 E-value=2.5 Score=37.67 Aligned_cols=85 Identities=12% Similarity=0.222 Sum_probs=47.6
Q ss_pred EEEEeCCCChH---hHHH----HHhcCCCCCCCcEEEEEeCCh---------hhHhhcCcceEEEccCCChhhHHHHHHH
Q 012324 4 LIVFDDVTCFS---QLES----IIRSLDWLTPVSRIIITTRNK---------QVLRNWGVRKIYEIEALENHHALELFSR 67 (466)
Q Consensus 4 LlvlDd~~~~~---~~~~----l~~~~~~~~~gs~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 67 (466)
+++|||+.... .|.. +...+. ..|.+||+|++.. +..+.+...-+++++++++++-..++.+
T Consensus 100 lL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 100 LLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp EEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred EEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 68999996432 2322 222222 3467899999544 2233344566999999999999999999
Q ss_pred hhcCCCCCCchHHHHHHHHHHHhCC
Q 012324 68 HAFKRNHPDVGYEKLSSKVMKYAQG 92 (466)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~c~g 92 (466)
.+-...-. -.++++.-|++.+.+
T Consensus 178 ~a~~~~~~--l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 178 KAKERGIE--LPEEVIEYLARRFRR 200 (219)
T ss_dssp HHHHTT----S-HHHHHHHHHHTTS
T ss_pred HHHHhCCC--CcHHHHHHHHHhhcC
Confidence 88432221 124555556665543
No 101
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.21 E-value=7 Score=39.68 Aligned_cols=94 Identities=11% Similarity=0.157 Sum_probs=62.4
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCC-hhhHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|+|+++.. ..++.+...+.+......+|++|.+ ..+.... .....+++.+++.++..+.+.+.+-..+..
T Consensus 117 ~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~-- 194 (504)
T PRK14963 117 RKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE-- 194 (504)
T ss_pred CeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC--
Confidence 347899998754 4578888777665555555555543 3433222 224589999999999999999877433221
Q ss_pred hHHHHHHHHHHHhCCCceee
Q 012324 78 GYEKLSSKVMKYAQGVPLAL 97 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai 97 (466)
-..+....|++.++|.+--+
T Consensus 195 i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 195 AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred CCHHHHHHHHHHcCCCHHHH
Confidence 12456778889999877544
No 102
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=82.65 E-value=5.7 Score=38.26 Aligned_cols=96 Identities=9% Similarity=0.161 Sum_probs=60.9
Q ss_pred eEEEEEeCCCChH--hHHHHHhcCCCCCCCcEEEEEeCCh-hhHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCFS--QLESIIRSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|+|++.... ..+.|+..+.+-.....+|++|... .+.... .-...+++.+++.++..+.+.+.... ..
T Consensus 142 ~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~--- 217 (351)
T PRK09112 142 WRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG--- 217 (351)
T ss_pred ceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC---
Confidence 3478999987543 4666766665544555555555444 222111 12358999999999999999874321 11
Q ss_pred hHHHHHHHHHHHhCCCceeehhhh
Q 012324 78 GYEKLSSKVMKYAQGVPLALKVLG 101 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~~~ 101 (466)
-..+.+..+++.++|.|.....+.
T Consensus 218 ~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 218 SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 113446788999999998655443
No 103
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=82.05 E-value=9.8 Score=36.64 Aligned_cols=95 Identities=11% Similarity=0.133 Sum_probs=61.8
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChh-hHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
=++|+|++... ...+.+...+.+....+.+|++|.+.+ +... ......+++++++.++..+.+...+-..... -
T Consensus 119 ~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i 196 (355)
T TIGR02397 119 KVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--I 196 (355)
T ss_pred eEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--C
Confidence 37889988543 457777777755455666677775554 2222 2223578899999999998888876332211 1
Q ss_pred HHHHHHHHHHHhCCCceeehh
Q 012324 79 YEKLSSKVMKYAQGVPLALKV 99 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~~ 99 (466)
..+.+..+++.++|-|..+..
T Consensus 197 ~~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 197 EDEALELIARAADGSLRDALS 217 (355)
T ss_pred CHHHHHHHHHHcCCChHHHHH
Confidence 146677888999998865543
No 104
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=81.58 E-value=17 Score=38.63 Aligned_cols=90 Identities=13% Similarity=0.197 Sum_probs=61.3
Q ss_pred EEEEeCCCChH--hHHHHHhcCCCCCCCcEEEEEeCChh-hHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVTCFS--QLESIIRSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
++|||++.... .++.|+..+.+-....++|++|.+.. +..- ..-...++++.++.++..+.+++..-.+.-. -.
T Consensus 122 VIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id 199 (830)
T PRK07003 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FE 199 (830)
T ss_pred EEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CC
Confidence 68899997554 48888877766566778888777653 2211 1223589999999999999998876432211 12
Q ss_pred HHHHHHHHHHhCCCce
Q 012324 80 EKLSSKVMKYAQGVPL 95 (466)
Q Consensus 80 ~~~~~~i~~~c~glPl 95 (466)
.+..+.|++.++|-.-
T Consensus 200 ~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 200 PQALRLLARAAQGSMR 215 (830)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 4566778888888553
No 105
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=81.21 E-value=7.4 Score=37.13 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=56.7
Q ss_pred EEEEeCCCChH--hHHHHHhcCCCCCCCcEEEEEeCChh-hHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVTCFS--QLESIIRSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
++|+||+.... ..+.+...+......+++|+||.... +.... .....+++.+++.++....+.+.+-..... -.
T Consensus 128 vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~ 205 (337)
T PRK12402 128 TILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YD 205 (337)
T ss_pred EEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CC
Confidence 79999986442 34455544443345567877775432 22211 223578999999999999998876432211 12
Q ss_pred HHHHHHHHHHhCCCceee
Q 012324 80 EKLSSKVMKYAQGVPLAL 97 (466)
Q Consensus 80 ~~~~~~i~~~c~glPlai 97 (466)
.+....+++.++|.+-.+
T Consensus 206 ~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 206 DDGLELIAYYAGGDLRKA 223 (337)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 556777888887765443
No 106
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.82 E-value=0.15 Score=43.83 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=19.9
Q ss_pred CCcEEEcCCCCCCcccCcccccCcccCEEecCCCC
Q 012324 265 NLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCS 299 (466)
Q Consensus 265 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 299 (466)
.++.+|-+++.+...-...+.+++.++.|.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 45566666665544444445566666666666653
No 107
>PLN03025 replication factor C subunit; Provisional
Probab=79.53 E-value=8.7 Score=36.47 Aligned_cols=90 Identities=10% Similarity=0.199 Sum_probs=56.2
Q ss_pred EEEEEeCCCChH--hHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCFS--QLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
-+++||++.... ..+.+...+......++++++|... .+... ..-...++++++++++..+.+.+.+-..+..-
T Consensus 101 kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i-- 178 (319)
T PLN03025 101 KIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPY-- 178 (319)
T ss_pred EEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 478999987543 3455555554445567777776543 22111 11125799999999999999988774322211
Q ss_pred HHHHHHHHHHHhCCCc
Q 012324 79 YEKLSSKVMKYAQGVP 94 (466)
Q Consensus 79 ~~~~~~~i~~~c~glP 94 (466)
..+....|++.++|-.
T Consensus 179 ~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 179 VPEGLEAIIFTADGDM 194 (319)
T ss_pred CHHHHHHHHHHcCCCH
Confidence 1456678888888755
No 108
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=79.20 E-value=4.6 Score=40.41 Aligned_cols=95 Identities=14% Similarity=0.234 Sum_probs=57.9
Q ss_pred EEEEeCCCChH---hH-HHHHhcCCC-CCCCcEEEEEeCCh---------hhHhhcCcceEEEccCCChhhHHHHHHHhh
Q 012324 4 LIVFDDVTCFS---QL-ESIIRSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEIEALENHHALELFSRHA 69 (466)
Q Consensus 4 LlvlDd~~~~~---~~-~~l~~~~~~-~~~gs~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 69 (466)
+||+||+.... .+ +.+...+.. ...|..||+|+... .+...+..+-++.+++++.++-..++.+.+
T Consensus 209 vLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 209 VLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence 78999995322 22 222222211 13344688876532 333444556689999999999999999987
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCceeeh
Q 012324 70 FKRNHPDVGYEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glPlai~ 98 (466)
-.......-.+++..-|++.++|.|-.+.
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~gd~R~L~ 317 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSDDVRKIK 317 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCCCHHHHH
Confidence 43221012235677888888888776544
No 109
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.39 E-value=0.027 Score=56.25 Aligned_cols=157 Identities=24% Similarity=0.259 Sum_probs=85.1
Q ss_pred CCCCCCCcEEEcCCCCCCcc----cCcccccC-cccCEEecCCCCCCCccCC----CC--CCcccEEeecCccCc-----
Q 012324 260 MPRLNNLVILNLRSGKSLKS----LPSGIFNL-EFLTKLDLSGCSKLKRLPE----IS--SGNVCWLFLRGTAIE----- 323 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~~~~~~~~----~~--~~~l~~L~l~~~~i~----- 323 (466)
+..+.+|..|++++|.+.+. +-..+... ..|++|++..|........ .. ...++.++++.|.+.
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 45566777778877765532 11222222 4566677777665543221 11 234466666666653
Q ss_pred ccChhhh----ccCCCCeeecccccccccc----ccccCCCCC-CCEEEecCCCCCCC----CCcccCCC-CCCcEEEcc
Q 012324 324 ELPSSID----RLRRLGYLNLSDCKRLKSL----PSSLCKLKS-LKVLNLCGCSNLQR----LPECLGQL-SSPIILNLA 389 (466)
Q Consensus 324 ~lp~~l~----~l~~L~~L~l~~~~~~~~~----p~~~~~l~~-L~~L~l~~~~~~~~----~p~~l~~l-~~L~~L~l~ 389 (466)
.++..+. ...++++|++.+|..+... ...+...++ +..+++..|..... +.+.+..+ ..+++++++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~ 270 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS 270 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence 2233333 4667777777776543221 122334444 55566666443322 22334444 567777777
Q ss_pred CCCcc-----ccchhhhccCCCcEeecccCcC
Q 012324 390 KTNIE-----RIPESIIQLFVLRYLLLSYSER 416 (466)
Q Consensus 390 ~~~l~-----~lp~~l~~l~~L~~L~l~~~~~ 416 (466)
.|+++ .+...+.+.+.++.+.++.|++
T Consensus 271 ~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 271 RNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred cCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 77776 2444555666777777777654
No 110
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=76.92 E-value=14 Score=34.84 Aligned_cols=92 Identities=10% Similarity=0.162 Sum_probs=57.1
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChh-hHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
-++++|++... +....+...+......+++|+++.... +... ......+++++++.++....+.+.+-..... -
T Consensus 104 ~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~--i 181 (319)
T PRK00440 104 KIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE--I 181 (319)
T ss_pred eEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC--C
Confidence 37899988643 335566655554455567777764331 1111 1122478999999999988888876432221 1
Q ss_pred HHHHHHHHHHHhCCCcee
Q 012324 79 YEKLSSKVMKYAQGVPLA 96 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPla 96 (466)
.++....+++.++|-+--
T Consensus 182 ~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 182 TDDALEAIYYVSEGDMRK 199 (319)
T ss_pred CHHHHHHHHHHcCCCHHH
Confidence 245677888888887654
No 111
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=76.53 E-value=1.7 Score=41.86 Aligned_cols=150 Identities=22% Similarity=0.202 Sum_probs=84.5
Q ss_pred CCCCcEEEcCCCCCCcccC--cccccCcccCEEecCCCCCCCccCCC----CCCcccEEeecCccCc---ccChhhhccC
Q 012324 263 LNNLVILNLRSGKSLKSLP--SGIFNLEFLTKLDLSGCSKLKRLPEI----SSGNVCWLFLRGTAIE---ELPSSIDRLR 333 (466)
Q Consensus 263 l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~l~~~~i~---~lp~~l~~l~ 333 (466)
+..|++++.+++...+..+ .--.++.+|++|.+++|+........ ....|+.+++.+.... ++...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4555666665554332211 11224556666666666533221111 1123455555443322 2333345788
Q ss_pred CCCeeecccccccccc-----ccccCCCCCCCEEEecCCCCCC-CCCcccCCCCCCcEEEccCCCcc---ccchhhhccC
Q 012324 334 RLGYLNLSDCKRLKSL-----PSSLCKLKSLKVLNLCGCSNLQ-RLPECLGQLSSPIILNLAKTNIE---RIPESIIQLF 404 (466)
Q Consensus 334 ~L~~L~l~~~~~~~~~-----p~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~l~---~lp~~l~~l~ 404 (466)
.||.|.+++|..+... ......+..|..+.+++|+.+. ..-+.+..+++|+.+++-.+.-. .+...-.++|
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 9999999988765443 2334567788899998887654 23355677888998887655432 3444456688
Q ss_pred CCcEeecc
Q 012324 405 VLRYLLLS 412 (466)
Q Consensus 405 ~L~~L~l~ 412 (466)
+++...+.
T Consensus 453 ~i~v~a~~ 460 (483)
T KOG4341|consen 453 NIKVHAYF 460 (483)
T ss_pred cceehhhc
Confidence 87776654
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=76.37 E-value=9.9 Score=33.95 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=52.3
Q ss_pred EEEEeCCCChH--hHHHHHhcCCCC-CCCc-EEEEEeCChhhH--------hhcCcceEEEccCCChhhHHHHHHHhhcC
Q 012324 4 LIVFDDVTCFS--QLESIIRSLDWL-TPVS-RIIITTRNKQVL--------RNWGVRKIYEIEALENHHALELFSRHAFK 71 (466)
Q Consensus 4 LlvlDd~~~~~--~~~~l~~~~~~~-~~gs-~IlvTTR~~~v~--------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 71 (466)
++|+||+.... .-..+...+... ..+. .||+|++..... +.+.....++++++++++-..++.+.+-.
T Consensus 93 ~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~ 172 (227)
T PRK08903 93 LYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE 172 (227)
T ss_pred EEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence 68999996432 222233222211 2343 366666643221 12233468999999998877777654422
Q ss_pred CCCCCchHHHHHHHHHHHhCCCceeehhhhh
Q 012324 72 RNHPDVGYEKLSSKVMKYAQGVPLALKVLGC 102 (466)
Q Consensus 72 ~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 102 (466)
.. . .-.++....+++.+.|.+..+..+-.
T Consensus 173 ~~-v-~l~~~al~~L~~~~~gn~~~l~~~l~ 201 (227)
T PRK08903 173 RG-L-QLADEVPDYLLTHFRRDMPSLMALLD 201 (227)
T ss_pred cC-C-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 11 1 11245666677777777766554443
No 113
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.07 E-value=0.076 Score=46.59 Aligned_cols=81 Identities=22% Similarity=0.193 Sum_probs=39.1
Q ss_pred cccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccC
Q 012324 311 NVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAK 390 (466)
Q Consensus 311 ~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 390 (466)
..+.||++.|++..+...++.++.|..|+++.|. +..+|...++...+..+.... +.....|..++..+.++.+++-+
T Consensus 43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhcc
Confidence 3344444445555554455555555555555433 344444444444444444432 33344455555555555555554
Q ss_pred CCc
Q 012324 391 TNI 393 (466)
Q Consensus 391 ~~l 393 (466)
|.+
T Consensus 121 ~~~ 123 (326)
T KOG0473|consen 121 TEF 123 (326)
T ss_pred Ccc
Confidence 443
No 114
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=75.46 E-value=8.1 Score=37.98 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=50.4
Q ss_pred CeEEEEEeCCCChHhHHHHHhcCCCCCCCcEEEEEeCChhhHhh-----c-CcceEEEccCCChhhHHHHH
Q 012324 1 MKVLIVFDDVTCFSQLESIIRSLDWLTPVSRIIITTRNKQVLRN-----W-GVRKIYEIEALENHHALELF 65 (466)
Q Consensus 1 kr~LlvlDd~~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~-----~-~~~~~~~l~~L~~~~~~~Lf 65 (466)
++..|+||.|.....|+.....+.+.++. +|++|+-+...... . +-...+.+-||+..|-..+-
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 45789999999999999999888887777 89999888765432 1 22358999999988887654
No 115
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.81 E-value=2.2 Score=23.43 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=11.7
Q ss_pred CCcEEEccCCCccccch
Q 012324 382 SPIILNLAKTNIERIPE 398 (466)
Q Consensus 382 ~L~~L~l~~~~l~~lp~ 398 (466)
+|+.|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777777765
No 116
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.46 E-value=0.63 Score=40.13 Aligned_cols=77 Identities=25% Similarity=0.288 Sum_probs=38.2
Q ss_pred cEEeecCccCccc-ChhhhccCCCCeeeccccccccccc-cccC-CCCCCCEEEecCCCCCCC-CCcccCCCCCCcEEEc
Q 012324 313 CWLFLRGTAIEEL-PSSIDRLRRLGYLNLSDCKRLKSLP-SSLC-KLKSLKVLNLCGCSNLQR-LPECLGQLSSPIILNL 388 (466)
Q Consensus 313 ~~L~l~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~p-~~~~-~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l 388 (466)
+.++-+++.|... -+.+.+++.++.|.+.+|....... +.++ -.++|+.|++++|+.+.. .-..+..+++|+.|.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 5666666555522 2345566666666666665433221 1121 245666666666654332 2233445555555554
Q ss_pred c
Q 012324 389 A 389 (466)
Q Consensus 389 ~ 389 (466)
.
T Consensus 184 ~ 184 (221)
T KOG3864|consen 184 Y 184 (221)
T ss_pred c
Confidence 3
No 117
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=71.18 E-value=0.13 Score=45.09 Aligned_cols=87 Identities=21% Similarity=0.161 Sum_probs=48.6
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCee
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYL 338 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L 338 (466)
.+...+..+.||++.|... .+...++.++.|..|+++. |.+..+|..++.+..+..+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sk----------------------nq~~~~~~d~~q~~e~~~~ 93 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSK----------------------NQIKFLPKDAKQQRETVNA 93 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccH----------------------hhHhhChhhHHHHHHHHHH
Confidence 4555677777777776432 2333355566666666665 4455555555555555555
Q ss_pred eccccccccccccccCCCCCCCEEEecCCCC
Q 012324 339 NLSDCKRLKSLPSSLCKLKSLKVLNLCGCSN 369 (466)
Q Consensus 339 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 369 (466)
++..|. .+..|-+.++.+.+++++..++.+
T Consensus 94 ~~~~n~-~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 94 ASHKNN-HSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred Hhhccc-hhhCCccccccCCcchhhhccCcc
Confidence 555433 445555556666666665555443
No 118
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=70.96 E-value=30 Score=32.83 Aligned_cols=87 Identities=15% Similarity=0.297 Sum_probs=59.1
Q ss_pred EEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChh-hHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
.+|+|++... ...+.++..+-+-..++.+|.+|.+.+ +... ..-...+.+.+++++++.+.+.... . +
T Consensus 111 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~--~--- 182 (319)
T PRK06090 111 LFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I--T--- 182 (319)
T ss_pred EEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--c---
Confidence 5778888644 457888877776677777777777653 3222 2234589999999999998886542 1 1
Q ss_pred HHHHHHHHHHhCCCceeehhh
Q 012324 80 EKLSSKVMKYAQGVPLALKVL 100 (466)
Q Consensus 80 ~~~~~~i~~~c~glPlai~~~ 100 (466)
.+..+++.++|.|..+..+
T Consensus 183 --~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 --VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred --hHHHHHHHcCCCHHHHHHH
Confidence 1346788899999865444
No 119
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.11 E-value=23 Score=34.39 Aligned_cols=92 Identities=12% Similarity=0.199 Sum_probs=56.3
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEe-CChhhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITT-RNKQVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++++|++... ..++.+...+.+....+.+|++| ....+... .....+++.++++.++....+...+...+..
T Consensus 109 ~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-- 186 (367)
T PRK14970 109 YKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-- 186 (367)
T ss_pred cEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC--
Confidence 347999988643 34777766665444455555555 33333222 2223589999999999998888876432221
Q ss_pred hHHHHHHHHHHHhCCCce
Q 012324 78 GYEKLSSKVMKYAQGVPL 95 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPl 95 (466)
-..+.+..+++.++|-+-
T Consensus 187 i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 187 FEDDALHIIAQKADGALR 204 (367)
T ss_pred CCHHHHHHHHHhCCCCHH
Confidence 114566777888887554
No 120
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.84 E-value=4.1 Score=22.39 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=9.6
Q ss_pred CCCcEEEccCCCcccc
Q 012324 381 SSPIILNLAKTNIERI 396 (466)
Q Consensus 381 ~~L~~L~l~~~~l~~l 396 (466)
++|+.|+++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666543
No 121
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=68.60 E-value=2.2 Score=22.64 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=5.8
Q ss_pred CCCcEEEccCCCcc
Q 012324 381 SSPIILNLAKTNIE 394 (466)
Q Consensus 381 ~~L~~L~l~~~~l~ 394 (466)
++|+.|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34455555555443
No 122
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.36 E-value=14 Score=36.24 Aligned_cols=94 Identities=10% Similarity=0.091 Sum_probs=61.4
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEe-CChhhHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTT-R~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|+|++... .+++.+...+.+....+.+|++| +-..+.... .....+++++++.++..+.+...+-.... .
T Consensus 128 ~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~ 205 (397)
T PRK14955 128 YRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--S 205 (397)
T ss_pred eEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--C
Confidence 347899998644 46888888877666677766655 333333222 12347899999999998888776532211 1
Q ss_pred hHHHHHHHHHHHhCCCceee
Q 012324 78 GYEKLSSKVMKYAQGVPLAL 97 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai 97 (466)
-..+.+..|++.++|.+--+
T Consensus 206 i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 206 VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred CCHHHHHHHHHHcCCCHHHH
Confidence 22566788899999976533
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.56 E-value=29 Score=36.32 Aligned_cols=91 Identities=12% Similarity=0.220 Sum_probs=59.6
Q ss_pred EEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEe-CChhhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITT-RNKQVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
++|+|++... +.++.|...+.+-..++.+|++| +...+... ..-..++++++++.++....+.+.+-..+.. ..
T Consensus 124 VvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~ 201 (614)
T PRK14971 124 IYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AE 201 (614)
T ss_pred EEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CC
Confidence 6899988644 45788888777655666665555 44444332 2234689999999999998888766332211 11
Q ss_pred HHHHHHHHHHhCCCcee
Q 012324 80 EKLSSKVMKYAQGVPLA 96 (466)
Q Consensus 80 ~~~~~~i~~~c~glPla 96 (466)
.+.+..|++.++|-.--
T Consensus 202 ~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 202 PEALNVIAQKADGGMRD 218 (614)
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 44567788888886543
No 124
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=67.30 E-value=27 Score=37.25 Aligned_cols=89 Identities=11% Similarity=0.197 Sum_probs=53.1
Q ss_pred eEEEEEeCCC--ChHhHHHHHhcCCCCCCCcEEEEEeCChh----hHhh-cCcceEEEccCCChhhHHHHHHHhhcC---
Q 012324 2 KVLIVFDDVT--CFSQLESIIRSLDWLTPVSRIIITTRNKQ----VLRN-WGVRKIYEIEALENHHALELFSRHAFK--- 71 (466)
Q Consensus 2 r~LlvlDd~~--~~~~~~~l~~~~~~~~~gs~IlvTTR~~~----v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~--- 71 (466)
+.+++|||++ +..+++.+...+ ..|+.+++++..+. +... ..-...+++++|+.++...++.+.+-.
T Consensus 110 ~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~ 186 (725)
T PRK13341 110 RTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKER 186 (725)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHh
Confidence 4589999996 445677777654 34666666433322 1111 112357999999999999999876531
Q ss_pred --CCCCCchHHHHHHHHHHHhCCC
Q 012324 72 --RNHPDVGYEKLSSKVMKYAQGV 93 (466)
Q Consensus 72 --~~~~~~~~~~~~~~i~~~c~gl 93 (466)
+.....-..+....|++.+.|-
T Consensus 187 ~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 187 GYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred hcCCcccCCCHHHHHHHHHhCCCC
Confidence 0111112244556677777764
No 125
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.90 E-value=35 Score=34.99 Aligned_cols=92 Identities=11% Similarity=0.111 Sum_probs=58.5
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEe-CChhhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITT-RNKQVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|+|++... ..++.|+..+.+.....++|++| ....+... ..-...+++++++.++..+.+.+.+-.... .
T Consensus 120 ~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~ 197 (546)
T PRK14957 120 YKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--N 197 (546)
T ss_pred cEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--C
Confidence 347999998643 45788888877655566666544 33333322 222468999999999988888775532221 1
Q ss_pred hHHHHHHHHHHHhCCCce
Q 012324 78 GYEKLSSKVMKYAQGVPL 95 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPl 95 (466)
...+....|++.++|-+-
T Consensus 198 ~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 198 SDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred CCHHHHHHHHHHcCCCHH
Confidence 124455678888888553
No 126
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=65.91 E-value=22 Score=36.78 Aligned_cols=84 Identities=8% Similarity=0.218 Sum_probs=50.2
Q ss_pred EEEEeCCCCh---HhHH----HHHhcCCCCCCCcEEEEEeCCh---------hhHhhcCcceEEEccCCChhhHHHHHHH
Q 012324 4 LIVFDDVTCF---SQLE----SIIRSLDWLTPVSRIIITTRNK---------QVLRNWGVRKIYEIEALENHHALELFSR 67 (466)
Q Consensus 4 LlvlDd~~~~---~~~~----~l~~~~~~~~~gs~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 67 (466)
+|||||+... ..|+ .+...+. ..|..||+||... .+.+.+...-+++++..+.+.-..++++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 6999999643 1222 2222222 3355688888752 2334455667899999999999999998
Q ss_pred hhcCCCCCCchHHHHHHHHHHHhC
Q 012324 68 HAFKRNHPDVGYEKLSSKVMKYAQ 91 (466)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~c~ 91 (466)
++-...-.- -.+++.-|++.+.
T Consensus 458 ka~~r~l~l--~~eVi~yLa~r~~ 479 (617)
T PRK14086 458 KAVQEQLNA--PPEVLEFIASRIS 479 (617)
T ss_pred HHHhcCCCC--CHHHHHHHHHhcc
Confidence 874322111 1444555555444
No 127
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=65.91 E-value=27 Score=34.22 Aligned_cols=89 Identities=11% Similarity=0.188 Sum_probs=59.1
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
-++|+|++... ...+.|...+.+-..+..+|++|.+. .+... ..-...+.+++++.++..+.+.... ..+
T Consensus 119 kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~----~~~-- 192 (394)
T PRK07940 119 RIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD----GVD-- 192 (394)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc----CCC--
Confidence 36788998654 34566777766555677677777664 33322 1223689999999999998887432 111
Q ss_pred HHHHHHHHHHHhCCCceeeh
Q 012324 79 YEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~ 98 (466)
.+.+..+++.++|.|....
T Consensus 193 -~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 193 -PETARRAARASQGHIGRAR 211 (394)
T ss_pred -HHHHHHHHHHcCCCHHHHH
Confidence 3457788999999986543
No 128
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.83 E-value=39 Score=35.24 Aligned_cols=92 Identities=12% Similarity=0.225 Sum_probs=59.9
Q ss_pred EEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCC-hhhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRN-KQVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
++|||++... ..++.++..+.+-....++|++|.+ ..+... ..-...++++.++.++..+.+.+.+-..+.. -.
T Consensus 127 V~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie 204 (618)
T PRK14951 127 VFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AE 204 (618)
T ss_pred EEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CC
Confidence 6899999744 4588888777665556666655543 333322 2234689999999999999888776432211 11
Q ss_pred HHHHHHHHHHhCCCceee
Q 012324 80 EKLSSKVMKYAQGVPLAL 97 (466)
Q Consensus 80 ~~~~~~i~~~c~glPlai 97 (466)
.+....|++.++|-+-.+
T Consensus 205 ~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 205 PQALRLLARAARGSMRDA 222 (618)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 455677888888866443
No 129
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=65.72 E-value=22 Score=33.85 Aligned_cols=91 Identities=12% Similarity=0.195 Sum_probs=59.7
Q ss_pred EEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChhh-Hhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQV-LRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
.+|+|++... +..+.++..+.+-..++.+|.+|.+.+. ... ..-...+.+.+++.+++.+.+.... ... .
T Consensus 109 v~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-----~ 182 (328)
T PRK05707 109 VVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-----D 182 (328)
T ss_pred EEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC-----C
Confidence 3467988754 4577777777665567778888877632 211 1223579999999999998887653 111 1
Q ss_pred HHHHHHHHHHhCCCceeehhh
Q 012324 80 EKLSSKVMKYAQGVPLALKVL 100 (466)
Q Consensus 80 ~~~~~~i~~~c~glPlai~~~ 100 (466)
.+.+..++..++|-|..+..+
T Consensus 183 ~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred hHHHHHHHHHcCCCHHHHHHH
Confidence 334556788999999754433
No 130
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.58 E-value=19 Score=37.53 Aligned_cols=96 Identities=10% Similarity=0.120 Sum_probs=62.3
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCC-hhhHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
-++|||++... ..++.|+..+.+-....++|++|.+ ..+.... .-...+.++.++.++..+.+++..-.... . .
T Consensus 126 KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi-~-~ 203 (700)
T PRK12323 126 KVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI-A-H 203 (700)
T ss_pred eEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC-C-C
Confidence 47899998654 4588888877665555665555544 4443222 12358999999999999988876632221 1 1
Q ss_pred HHHHHHHHHHHhCCCceeehhh
Q 012324 79 YEKLSSKVMKYAQGVPLALKVL 100 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~~~ 100 (466)
..+..+.|++.++|.|.....+
T Consensus 204 d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 204 EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CHHHHHHHHHHcCCCHHHHHHH
Confidence 1345577899999988655443
No 131
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=65.01 E-value=1e+02 Score=32.16 Aligned_cols=94 Identities=15% Similarity=0.207 Sum_probs=60.6
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCC-hhhHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
=++|+|++... ...+.|...+.+-...+++|++|-+ ..+.... .-...+++..++.++....+.+.+-..... -
T Consensus 134 KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i 211 (598)
T PRK09111 134 KVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--V 211 (598)
T ss_pred EEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--C
Confidence 36899988544 3577777777665666777666533 3332222 223589999999999999998876332211 1
Q ss_pred HHHHHHHHHHHhCCCceeeh
Q 012324 79 YEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~ 98 (466)
..+....|++.++|-+.-+.
T Consensus 212 ~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 212 EDEALALIARAAEGSVRDGL 231 (598)
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 13566778888888775443
No 132
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=63.53 E-value=25 Score=34.67 Aligned_cols=89 Identities=12% Similarity=0.205 Sum_probs=49.5
Q ss_pred EEEEeCCCChH---hH-HHHHhcCCC-CCCCcEEEEEeCCh-h--------hHhhcCcceEEEccCCChhhHHHHHHHhh
Q 012324 4 LIVFDDVTCFS---QL-ESIIRSLDW-LTPVSRIIITTRNK-Q--------VLRNWGVRKIYEIEALENHHALELFSRHA 69 (466)
Q Consensus 4 LlvlDd~~~~~---~~-~~l~~~~~~-~~~gs~IlvTTR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 69 (466)
+|||||+.... .+ +.+...+.. ...|..||+||... . +...+....++.+++.+.++-..++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 78999996421 11 122222111 12345577777542 1 22223344579999999999999998887
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCc
Q 012324 70 FKRNHPDVGYEKLSSKVMKYAQGVP 94 (466)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~c~glP 94 (466)
-..... -.+++...|++.+.|-.
T Consensus 282 ~~~~~~--l~~e~l~~ia~~~~~~~ 304 (405)
T TIGR00362 282 EEEGLE--LPDEVLEFIAKNIRSNV 304 (405)
T ss_pred HHcCCC--CCHHHHHHHHHhcCCCH
Confidence 432211 11455566666665543
No 133
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.66 E-value=41 Score=35.00 Aligned_cols=98 Identities=8% Similarity=0.124 Sum_probs=61.1
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCC-hhhHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|||++... +..+.|...+.+-.....+|++|.+ ..+.... .-...++++.++.++..+.+...+......
T Consensus 120 ~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-- 197 (624)
T PRK14959 120 YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-- 197 (624)
T ss_pred ceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--
Confidence 347899988644 4577777776554445556665554 3433221 223478999999999999888766432211
Q ss_pred hHHHHHHHHHHHhCCCc-eeehhhh
Q 012324 78 GYEKLSSKVMKYAQGVP-LALKVLG 101 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glP-lai~~~~ 101 (466)
-..+.+..|++..+|-+ .|+..+.
T Consensus 198 id~eal~lIA~~s~GdlR~Al~lLe 222 (624)
T PRK14959 198 YDPAAVRLIARRAAGSVRDSMSLLG 222 (624)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 12456677888888854 4544444
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=62.30 E-value=42 Score=33.66 Aligned_cols=92 Identities=10% Similarity=0.148 Sum_probs=57.3
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|+|++... +..+.|...+.+......+|++|.+. .+... ......++++++++++..+.+.+.+-..+..
T Consensus 122 ~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-- 199 (451)
T PRK06305 122 YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-- 199 (451)
T ss_pred CEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--
Confidence 347899988643 34666776766555566676666432 22221 2223589999999999988888765322211
Q ss_pred hHHHHHHHHHHHhCCCce
Q 012324 78 GYEKLSSKVMKYAQGVPL 95 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPl 95 (466)
-..+.+..|++.++|-+-
T Consensus 200 i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 200 TSREALLPIARAAQGSLR 217 (451)
T ss_pred CCHHHHHHHHHHcCCCHH
Confidence 124567778888888553
No 135
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=61.91 E-value=23 Score=32.97 Aligned_cols=88 Identities=11% Similarity=0.212 Sum_probs=58.0
Q ss_pred EEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChhhHhh-c-CcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQVLRN-W-GVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~-~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
.+|||++... +.|..+....-+....++-+..|-..+..-. . .-...++.++|.+++..+-++..+-.++.. -.
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d 209 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD--ID 209 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC--CC
Confidence 4789988754 4699998887665556666555554433211 1 112478999999999999998887443321 11
Q ss_pred HHHHHHHHHHhCCC
Q 012324 80 EKLSSKVMKYAQGV 93 (466)
Q Consensus 80 ~~~~~~i~~~c~gl 93 (466)
.+..+.|++.++|-
T Consensus 210 ~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 210 DDALKLIAKISDGD 223 (346)
T ss_pred HHHHHHHHHHcCCc
Confidence 45567788888874
No 136
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=61.60 E-value=40 Score=33.73 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=40.3
Q ss_pred EEEEeCCCChHh----HHHHHhcCCC-CCCCcEEEEEeCCh---------hhHhhcCcceEEEccCCChhhHHHHHHHhh
Q 012324 4 LIVFDDVTCFSQ----LESIIRSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEIEALENHHALELFSRHA 69 (466)
Q Consensus 4 LlvlDd~~~~~~----~~~l~~~~~~-~~~gs~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 69 (466)
++++||+..... -+.+...+.. ...|..||+||... .+...+..+.++.+++++.++-..++++.+
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 789999854321 1122222110 01345677777542 223334555789999999999999998877
Q ss_pred c
Q 012324 70 F 70 (466)
Q Consensus 70 ~ 70 (466)
-
T Consensus 285 ~ 285 (445)
T PRK12422 285 E 285 (445)
T ss_pred H
Confidence 3
No 137
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.09 E-value=40 Score=35.34 Aligned_cols=94 Identities=10% Similarity=0.108 Sum_probs=61.6
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCCh-hhH-hhcCcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNK-QVL-RNWGVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
=++|+|++... ...+.+...+.+...+.++|++|.+. .+. +...-...+++.+++.++..+.+.+.+-..... -
T Consensus 120 KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--i 197 (702)
T PRK14960 120 KVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--A 197 (702)
T ss_pred EEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--C
Confidence 47889998754 45777777776655666777777654 221 112223589999999999999888876432211 1
Q ss_pred HHHHHHHHHHHhCCCceeeh
Q 012324 79 YEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~ 98 (466)
..+....|++.++|-+-.+.
T Consensus 198 d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 198 DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 24456778888888664443
No 138
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=60.50 E-value=1.6e+02 Score=32.22 Aligned_cols=91 Identities=10% Similarity=0.158 Sum_probs=59.3
Q ss_pred EEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
++|||++... ...+.|+..+.+-...+.+|++|.+. .+... ..-...|++..++.++..+.+.+..-..... ..
T Consensus 123 V~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id 200 (824)
T PRK07764 123 IFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VE 200 (824)
T ss_pred EEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CC
Confidence 6789988644 45888888887766676666666443 33332 2234689999999999888887765322211 12
Q ss_pred HHHHHHHHHHhCCCcee
Q 012324 80 EKLSSKVMKYAQGVPLA 96 (466)
Q Consensus 80 ~~~~~~i~~~c~glPla 96 (466)
.+....|++.++|-+..
T Consensus 201 ~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 201 PGVLPLVIRAGGGSVRD 217 (824)
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 34456788888887643
No 139
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.99 E-value=59 Score=32.79 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=58.6
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCC-hhhHhhc-CcceEEEccCCChhhHHHHHHHhhcCCC-CCC
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEIEALENHHALELFSRHAFKRN-HPD 76 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~ 76 (466)
+-++|+|++... ++.+.+...+.+......+|++|.+ ..+.... .....+++.+++.++....+.+.+.... ..+
T Consensus 118 ~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~ 197 (472)
T PRK14962 118 YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID 197 (472)
T ss_pred eEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC
Confidence 348899998643 3466677666543444444444433 3333322 2335899999999999998888764322 222
Q ss_pred chHHHHHHHHHHHhCC-Cceeehhhh
Q 012324 77 VGYEKLSSKVMKYAQG-VPLALKVLG 101 (466)
Q Consensus 77 ~~~~~~~~~i~~~c~g-lPlai~~~~ 101 (466)
.+....|++.++| ++.|+..+-
T Consensus 198 ---~eal~~Ia~~s~GdlR~aln~Le 220 (472)
T PRK14962 198 ---REALSFIAKRASGGLRDALTMLE 220 (472)
T ss_pred ---HHHHHHHHHHhCCCHHHHHHHHH
Confidence 4556778887765 445544443
No 140
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.90 E-value=54 Score=33.19 Aligned_cols=92 Identities=15% Similarity=0.226 Sum_probs=61.0
Q ss_pred EEEEEeCCCC--hHhHHHHHhcCCCCCCCcEEEEEeCC-hhhHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTC--FSQLESIIRSLDWLTPVSRIIITTRN-KQVLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~--~~~~~~l~~~~~~~~~gs~IlvTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
=++|+|++.. .+..+.|...+.+-....++|++|.+ ..+.... .-...+++.+++.++..+.+.+.+...... -
T Consensus 118 KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i 195 (491)
T PRK14964 118 KVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--H 195 (491)
T ss_pred eEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--C
Confidence 3689999864 34577787777765666767766643 3443322 234689999999999999998877433221 1
Q ss_pred HHHHHHHHHHHhCCCcee
Q 012324 79 YEKLSSKVMKYAQGVPLA 96 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPla 96 (466)
..+....|++.++|-+-.
T Consensus 196 ~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 196 DEESLKLIAENSSGSMRN 213 (491)
T ss_pred CHHHHHHHHHHcCCCHHH
Confidence 245567788888886653
No 141
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=59.79 E-value=66 Score=31.03 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=52.7
Q ss_pred eEEEEEeCCCChH-----hHHHHHhcC-CCCC--CCcEEEEEeCChhhHhhcC-------cceEEEccCCChhhHHHHHH
Q 012324 2 KVLIVFDDVTCFS-----QLESIIRSL-DWLT--PVSRIIITTRNKQVLRNWG-------VRKIYEIEALENHHALELFS 66 (466)
Q Consensus 2 r~LlvlDd~~~~~-----~~~~l~~~~-~~~~--~gs~IlvTTR~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~ 66 (466)
+++||||+++... ....+.... .... ..-.+|++|...+...... ....+.+++++.+|..+++.
T Consensus 130 ~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~ 209 (365)
T TIGR02928 130 SLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILE 209 (365)
T ss_pred eEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHH
Confidence 5789999997651 122332221 1111 2224555555444322211 12468999999999999999
Q ss_pred Hhhc---CCCCCCchHHHHHHHHHHHhCCCceee
Q 012324 67 RHAF---KRNHPDVGYEKLSSKVMKYAQGVPLAL 97 (466)
Q Consensus 67 ~~~~---~~~~~~~~~~~~~~~i~~~c~glPlai 97 (466)
.++- .+...+++..+.+.+++....|.|-.+
T Consensus 210 ~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 210 NRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred HHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 8763 222233333344555666677777443
No 142
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.00 E-value=51 Score=33.18 Aligned_cols=93 Identities=9% Similarity=0.036 Sum_probs=59.4
Q ss_pred EEEEEeCCCC--hHhHHHHHhcCCCCCCCcEEEEEe-CChhhHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTC--FSQLESIIRSLDWLTPVSRIIITT-RNKQVLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~--~~~~~~l~~~~~~~~~gs~IlvTT-R~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
-.+|+|++.. .+.++.|+..+.+-......|.+| ....+.... .-...|.+.+++.++..+.+.+.+-..+.. -
T Consensus 123 KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~ 200 (484)
T PRK14956 123 KVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--Y 200 (484)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC--C
Confidence 4789999864 445888887775534444444444 434443222 223579999999999998888876432211 1
Q ss_pred HHHHHHHHHHHhCCCceee
Q 012324 79 YEKLSSKVMKYAQGVPLAL 97 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai 97 (466)
..+....|++.++|-+--+
T Consensus 201 e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 201 DQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred CHHHHHHHHHHcCChHHHH
Confidence 2456778999999987543
No 143
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=58.80 E-value=67 Score=32.91 Aligned_cols=94 Identities=7% Similarity=0.147 Sum_probs=61.3
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
=++|+|++... +..+.|+..+.+-...+++|++|.+. .+... ..-...+++.+++.++....+.+.+-..+.. -
T Consensus 119 KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i 196 (535)
T PRK08451 119 KIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--Y 196 (535)
T ss_pred EEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--C
Confidence 37899998644 34777777776555667777777653 22211 1223589999999999998887766332211 1
Q ss_pred HHHHHHHHHHHhCCCceeeh
Q 012324 79 YEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~ 98 (466)
..+.+..|++.++|-+.-+.
T Consensus 197 ~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 197 EPEALEILARSGNGSLRDTL 216 (535)
T ss_pred CHHHHHHHHHHcCCcHHHHH
Confidence 24567788999998775443
No 144
>PRK04195 replication factor C large subunit; Provisional
Probab=58.75 E-value=71 Score=32.37 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=57.1
Q ss_pred eEEEEEeCCCChH------hHHHHHhcCCCCCCCcEEEEEeCCh-hhHh--hcCcceEEEccCCChhhHHHHHHHhhcCC
Q 012324 2 KVLIVFDDVTCFS------QLESIIRSLDWLTPVSRIIITTRNK-QVLR--NWGVRKIYEIEALENHHALELFSRHAFKR 72 (466)
Q Consensus 2 r~LlvlDd~~~~~------~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~--~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 72 (466)
+-+||+|+++... .+..+...+.. .+..||+|+.+. .+.. .-.....+++++++.++....+.+.+...
T Consensus 99 ~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~e 176 (482)
T PRK04195 99 RKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKE 176 (482)
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHc
Confidence 4589999997532 25556555542 233466666443 2111 11234589999999999999888876433
Q ss_pred CCCCchHHHHHHHHHHHhCCCceeeh
Q 012324 73 NHPDVGYEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 73 ~~~~~~~~~~~~~i~~~c~glPlai~ 98 (466)
.... ..+....|++.++|-.-.+.
T Consensus 177 gi~i--~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 177 GIEC--DDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred CCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 2211 14567788888888655544
No 145
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=57.89 E-value=13 Score=33.02 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=27.1
Q ss_pred EEEEeCCCChH---hHHHHHhcCCCCCCCcEEEEEeCChhhHhhcC
Q 012324 4 LIVFDDVTCFS---QLESIIRSLDWLTPVSRIIITTRNKQVLRNWG 46 (466)
Q Consensus 4 LlvlDd~~~~~---~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~~ 46 (466)
++||||+...- ....+...+.+....+-+||||.++.+...+.
T Consensus 161 ~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 161 FLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp EEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-S
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999997433 34445444444455678999999998877664
No 146
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=57.55 E-value=26 Score=35.17 Aligned_cols=88 Identities=11% Similarity=0.184 Sum_probs=51.8
Q ss_pred EEEEeCCCCh---Hh-HHHHHh---cCCCCCCCcEEEEEeCCh---------hhHhhcCcceEEEccCCChhhHHHHHHH
Q 012324 4 LIVFDDVTCF---SQ-LESIIR---SLDWLTPVSRIIITTRNK---------QVLRNWGVRKIYEIEALENHHALELFSR 67 (466)
Q Consensus 4 LlvlDd~~~~---~~-~~~l~~---~~~~~~~gs~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 67 (466)
+|||||+... .. -+.+.. .+. ..|..||+||... .+.+.+..+.++++++.+.++-..++++
T Consensus 214 lLiiDDi~~l~~~~~~~~~l~~~~n~l~--~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 214 VLLIDDIQFLAGKERTQEEFFHTFNALH--EAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHH--HCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 7899999532 11 122222 222 2344577777543 1233344556899999999999999999
Q ss_pred hhcCCCCCCchHHHHHHHHHHHhCCCce
Q 012324 68 HAFKRNHPDVGYEKLSSKVMKYAQGVPL 95 (466)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~c~glPl 95 (466)
.+-..... -..++...|++.+.|-.-
T Consensus 292 ~~~~~~~~--l~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 292 KAEEEGID--LPDEVLEFIAKNITSNVR 317 (450)
T ss_pred HHHHcCCC--CCHHHHHHHHcCcCCCHH
Confidence 87432211 124556667776666543
No 147
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=57.38 E-value=30 Score=36.43 Aligned_cols=95 Identities=9% Similarity=0.087 Sum_probs=58.8
Q ss_pred eEEEEEeCCCChH--hHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCFS--QLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+=++|||++.... ..+.|+..+.+-....++|++|.+. .+... .+-...+++..++.++..+.+.+.+-..+..
T Consensus 120 ~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-- 197 (709)
T PRK08691 120 YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA-- 197 (709)
T ss_pred cEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--
Confidence 3478999987544 3666666665444556677666544 22211 1112467888999999999888776432211
Q ss_pred hHHHHHHHHHHHhCCCceeeh
Q 012324 78 GYEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~ 98 (466)
-..+....|++.++|-+.-+.
T Consensus 198 id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 198 YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred cCHHHHHHHHHHhCCCHHHHH
Confidence 124566788888888774443
No 148
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=56.83 E-value=26 Score=36.69 Aligned_cols=69 Identities=14% Similarity=0.014 Sum_probs=40.1
Q ss_pred eEEEEEeCCCChH--hHHHHHhcCCCCCCCcEEEE--EeCChhhH-hhc-CcceEEEccCCChhhHHHHHHHhhc
Q 012324 2 KVLIVFDDVTCFS--QLESIIRSLDWLTPVSRIII--TTRNKQVL-RNW-GVRKIYEIEALENHHALELFSRHAF 70 (466)
Q Consensus 2 r~LlvlDd~~~~~--~~~~l~~~~~~~~~gs~Ilv--TTR~~~v~-~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~ 70 (466)
+++++-|+.|..+ .|..+...+....+...|++ ||++.... ... .....+.+.+++.+|.++++++.+-
T Consensus 293 ~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 293 RVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred eEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 3444544444332 35555555555555555665 66654321 111 1124678999999999999998763
No 149
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=56.64 E-value=48 Score=32.49 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=43.4
Q ss_pred EEEEeCCCChH---hHH----HHHhcCCCCCCCcEEEEEeCC---------hhhHhhcCcceEEEccCCChhhHHHHHHH
Q 012324 4 LIVFDDVTCFS---QLE----SIIRSLDWLTPVSRIIITTRN---------KQVLRNWGVRKIYEIEALENHHALELFSR 67 (466)
Q Consensus 4 LlvlDd~~~~~---~~~----~l~~~~~~~~~gs~IlvTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 67 (466)
++++||++-.. .|+ .+...+. ..|..||+|++. .++.+.++.+-++++.+++.+....++.+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 78999985321 122 2222233 234479998853 34445566677999999999999999998
Q ss_pred hhcC
Q 012324 68 HAFK 71 (466)
Q Consensus 68 ~~~~ 71 (466)
.+-.
T Consensus 256 ka~~ 259 (408)
T COG0593 256 KAED 259 (408)
T ss_pred HHHh
Confidence 7743
No 150
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=56.18 E-value=41 Score=32.65 Aligned_cols=92 Identities=15% Similarity=0.247 Sum_probs=57.1
Q ss_pred CeEEEEEeCCC--ChHhHHHHHhcCCCCCCCcEEEE--EeCChhhHh---hcCcceEEEccCCChhhHHHHHHHhhc-CC
Q 012324 1 MKVLIVFDDVT--CFSQLESIIRSLDWLTPVSRIII--TTRNKQVLR---NWGVRKIYEIEALENHHALELFSRHAF-KR 72 (466)
Q Consensus 1 kr~LlvlDd~~--~~~~~~~l~~~~~~~~~gs~Ilv--TTR~~~v~~---~~~~~~~~~l~~L~~~~~~~Lf~~~~~-~~ 72 (466)
+|.+|.+|.|- +..+-+.+++. .+.|..|+| ||-+..-.- ...-..++.+++|+.+|-.+++.+-+. ..
T Consensus 104 r~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred CceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhh
Confidence 57899999995 34456666655 477887777 555553211 112236999999999999999988432 11
Q ss_pred CCCC----chHHHHHHHHHHHhCCCce
Q 012324 73 NHPD----VGYEKLSSKVMKYAQGVPL 95 (466)
Q Consensus 73 ~~~~----~~~~~~~~~i~~~c~glPl 95 (466)
.... .-.++.-.-+++.++|---
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHH
Confidence 1111 1123455567777777543
No 151
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.65 E-value=64 Score=33.61 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=61.9
Q ss_pred eEEEEEeCCCC--hHhHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTC--FSQLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~--~~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|+|++.. .+..+.|...+.+....+.+|++|.+. .+... ..-...++++.++.++....+...+......
T Consensus 121 ~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-- 198 (585)
T PRK14950 121 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-- 198 (585)
T ss_pred eEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--
Confidence 44789998864 345777777766555566676666443 33222 1223578899999999988888776432221
Q ss_pred hHHHHHHHHHHHhCCCceeehh
Q 012324 78 GYEKLSSKVMKYAQGVPLALKV 99 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~ 99 (466)
-..+.+..|++.++|-+..+..
T Consensus 199 i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 199 LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred CCHHHHHHHHHHcCCCHHHHHH
Confidence 1245677889999987765443
No 152
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.05 E-value=66 Score=33.67 Aligned_cols=90 Identities=11% Similarity=0.151 Sum_probs=58.9
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeC-ChhhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCC-CCCc
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTR-NKQVLRN-WGVRKIYEIEALENHHALELFSRHAFKRN-HPDV 77 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR-~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~ 77 (466)
=++|+|++... ...+.|...+.+-...+.+|++|. -..+... ......+++.+++.++....+.+.+-... ..+
T Consensus 129 KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~- 207 (620)
T PRK14954 129 RVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID- 207 (620)
T ss_pred EEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 36899988654 357778877776555666555553 3344322 23346899999999998888877653222 222
Q ss_pred hHHHHHHHHHHHhCCCce
Q 012324 78 GYEKLSSKVMKYAQGVPL 95 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPl 95 (466)
.+.+..|++.++|-.-
T Consensus 208 --~eal~~La~~s~Gdlr 223 (620)
T PRK14954 208 --ADALQLIARKAQGSMR 223 (620)
T ss_pred --HHHHHHHHHHhCCCHH
Confidence 5567788899998544
No 153
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.73 E-value=49 Score=33.94 Aligned_cols=93 Identities=11% Similarity=0.134 Sum_probs=59.0
Q ss_pred eEEEEEeCCCChH--hHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCFS--QLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|+|++.... ..+.++..+.+-....++|++|.+. .+... ..-...++++.++.++..+.+.+.+-.....
T Consensus 120 ~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-- 197 (527)
T PRK14969 120 FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-- 197 (527)
T ss_pred ceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--
Confidence 3478999997543 4777877777655566666655443 32211 1113588999999999998887765322211
Q ss_pred hHHHHHHHHHHHhCCCcee
Q 012324 78 GYEKLSSKVMKYAQGVPLA 96 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPla 96 (466)
...+....|++.++|.+--
T Consensus 198 ~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 198 FDATALQLLARAAAGSMRD 216 (527)
T ss_pred CCHHHHHHHHHHcCCCHHH
Confidence 1244567788888887653
No 154
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=54.59 E-value=20 Score=30.09 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=25.4
Q ss_pred EEEEeCCCCh-----HhHHHHHhcCCCCCCCcEEEEEeCChh
Q 012324 4 LIVFDDVTCF-----SQLESIIRSLDWLTPVSRIIITTRNKQ 40 (466)
Q Consensus 4 LlvlDd~~~~-----~~~~~l~~~~~~~~~gs~IlvTTR~~~ 40 (466)
|+|||.+.-. -..+.+...+.....+.-||+|.|+..
T Consensus 98 LlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 98 LVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred EEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 7999998433 124455555555566778999999974
No 155
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.43 E-value=66 Score=35.06 Aligned_cols=97 Identities=10% Similarity=0.093 Sum_probs=62.5
Q ss_pred eEEEEEeCCCC--hHhHHHHHhcCCCCCCCcEEEEEeCC-hhhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTC--FSQLESIIRSLDWLTPVSRIIITTRN-KQVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~--~~~~~~l~~~~~~~~~gs~IlvTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|||++.. .+..+.|+..+.+-....++|++|.+ ..+... ..-...|++++|+.++....+.+.+-.... .
T Consensus 120 ~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~ 197 (944)
T PRK14949 120 FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL--P 197 (944)
T ss_pred cEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC--C
Confidence 44799998864 45678887777654555666665544 343322 122368999999999999988876533211 1
Q ss_pred hHHHHHHHHHHHhCCCceeehhh
Q 012324 78 GYEKLSSKVMKYAQGVPLALKVL 100 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~~ 100 (466)
-..+.+..|++.++|.|-.+..+
T Consensus 198 ~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 198 FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12456677888899977644433
No 156
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=53.48 E-value=49 Score=31.41 Aligned_cols=89 Identities=12% Similarity=0.206 Sum_probs=57.7
Q ss_pred EEEEeCCCChH--hHHHHHhcCCCCCCCcEEEEEeCChh-hHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVTCFS--QLESIIRSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
.+|||++.... .=+.|+..+.+-..++.+|++|.+.+ +... ..-...+.+.+++.+++.+.+.... .+
T Consensus 116 V~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~~--- 187 (319)
T PRK08769 116 VVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----VS--- 187 (319)
T ss_pred EEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----CC---
Confidence 67888886543 35566666655566777777777553 2221 2223588999999999988886531 11
Q ss_pred HHHHHHHHHHhCCCceeehhh
Q 012324 80 EKLSSKVMKYAQGVPLALKVL 100 (466)
Q Consensus 80 ~~~~~~i~~~c~glPlai~~~ 100 (466)
...+..++..++|.|..+..+
T Consensus 188 ~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hHHHHHHHHHcCCCHHHHHHH
Confidence 223567789999999865433
No 157
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=53.31 E-value=49 Score=33.05 Aligned_cols=85 Identities=13% Similarity=0.181 Sum_probs=48.6
Q ss_pred EEEEeCCCCh---H----hHHHHHhcCCCCCCCcEEEEEeC-Chhh--------HhhcCcceEEEccCCChhhHHHHHHH
Q 012324 4 LIVFDDVTCF---S----QLESIIRSLDWLTPVSRIIITTR-NKQV--------LRNWGVRKIYEIEALENHHALELFSR 67 (466)
Q Consensus 4 LlvlDd~~~~---~----~~~~l~~~~~~~~~gs~IlvTTR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~Lf~~ 67 (466)
+|++||+... . ++-.+...+. ..|..||+||. ...- .+.+..+-++++++.+.++-..++++
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 7999999632 1 1212222222 23446888874 3321 12233455889999999999999988
Q ss_pred hhcCCCCCCchHHHHHHHHHHHhCC
Q 012324 68 HAFKRNHPDVGYEKLSSKVMKYAQG 92 (466)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~c~g 92 (466)
.+-..... -..++...|++.+.|
T Consensus 275 ~~~~~~~~--l~~ev~~~Ia~~~~~ 297 (440)
T PRK14088 275 MLEIEHGE--LPEEVLNFVAENVDD 297 (440)
T ss_pred HHHhcCCC--CCHHHHHHHHhcccc
Confidence 87432211 114556666666655
No 158
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=53.15 E-value=9.6 Score=20.66 Aligned_cols=15 Identities=33% Similarity=0.080 Sum_probs=10.8
Q ss_pred CCCcEeecccCcCCC
Q 012324 404 FVLRYLLLSYSERFQ 418 (466)
Q Consensus 404 ~~L~~L~l~~~~~~~ 418 (466)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 578888888876543
No 159
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=51.58 E-value=42 Score=31.27 Aligned_cols=67 Identities=7% Similarity=0.083 Sum_probs=42.0
Q ss_pred EEEEEeCCCC-----------hHhHHHHHhcCCCCCCCcEEEEEeCChhhHhhcC--------cceEEEccCCChhhHHH
Q 012324 3 VLIVFDDVTC-----------FSQLESIIRSLDWLTPVSRIIITTRNKQVLRNWG--------VRKIYEIEALENHHALE 63 (466)
Q Consensus 3 ~LlvlDd~~~-----------~~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~~--------~~~~~~l~~L~~~~~~~ 63 (466)
-+|+||++.. .+.++.+...+.+...+-+||++|.......... ....+++++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 3688999852 2235556665554445556666665432222111 13479999999999999
Q ss_pred HHHHhh
Q 012324 64 LFSRHA 69 (466)
Q Consensus 64 Lf~~~~ 69 (466)
++.+.+
T Consensus 203 I~~~~l 208 (284)
T TIGR02880 203 IAGLML 208 (284)
T ss_pred HHHHHH
Confidence 998876
No 160
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=50.19 E-value=53 Score=31.51 Aligned_cols=87 Identities=13% Similarity=0.237 Sum_probs=57.2
Q ss_pred EEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChh-hHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
.+|+|++... +..+.|+..+-+-..++.+|.+|.+.+ +... ..-...+.+.+++.++..+.+.... . +.
T Consensus 135 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~--~~-- 207 (342)
T PRK06964 135 VVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V--AD-- 207 (342)
T ss_pred EEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--Ch--
Confidence 5678888644 458888888777677777777776643 3222 2223689999999999998887642 1 11
Q ss_pred HHHHHHHHHHhCCCceeehhh
Q 012324 80 EKLSSKVMKYAQGVPLALKVL 100 (466)
Q Consensus 80 ~~~~~~i~~~c~glPlai~~~ 100 (466)
....+..++|-|..+..+
T Consensus 208 ---~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 208 ---ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---HHHHHHHcCCCHHHHHHH
Confidence 123567789999754433
No 161
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=50.03 E-value=75 Score=30.77 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=39.1
Q ss_pred CCcEEEEEeCChhhHhh-c----CcceEEEccCCChhhHHHHHHHhhcCCCCC-CchHHHHHHHHHHHhCCCc
Q 012324 28 PVSRIIITTRNKQVLRN-W----GVRKIYEIEALENHHALELFSRHAFKRNHP-DVGYEKLSSKVMKYAQGVP 94 (466)
Q Consensus 28 ~gs~IlvTTR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~c~glP 94 (466)
.+.+||.||...+.... . .....+.++..+.++..++|..++...... +.+ ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 35678888875532211 1 224579999999999999999887443222 122 245666676653
No 162
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.77 E-value=2.1e+02 Score=29.00 Aligned_cols=95 Identities=11% Similarity=0.131 Sum_probs=58.8
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCC-hhhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRN-KQVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+=++|+|++... +..+.+...+.+......+|++|.+ ..+... ......+++.+++.++....+.+.+-..+..
T Consensus 120 ~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-- 197 (486)
T PRK14953 120 YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-- 197 (486)
T ss_pred eeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--
Confidence 347899988643 4567777776655555555555533 333221 2223579999999999988888766332211
Q ss_pred hHHHHHHHHHHHhCCCceeeh
Q 012324 78 GYEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~ 98 (466)
...+.+..|++.++|.+..+.
T Consensus 198 id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 198 YEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 124556778888888765443
No 163
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=49.32 E-value=75 Score=33.41 Aligned_cols=96 Identities=9% Similarity=0.107 Sum_probs=60.4
Q ss_pred EEEEEeCCCC--hHhHHHHHhcCCCCCCCcEEEEEeCC-hhhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTC--FSQLESIIRSLDWLTPVSRIIITTRN-KQVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~--~~~~~~l~~~~~~~~~gs~IlvTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
-++|||++.. ....+.|+..+.+-....++|.+|.+ ..+... ..-...+++++++.++..+.+.+..-.... . .
T Consensus 121 KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~-~ 198 (647)
T PRK07994 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI-P-F 198 (647)
T ss_pred EEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-C-C
Confidence 4789998864 34577777776654455555555444 444322 222368999999999999988876532221 1 1
Q ss_pred HHHHHHHHHHHhCCCceeehhh
Q 012324 79 YEKLSSKVMKYAQGVPLALKVL 100 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~~~ 100 (466)
..+....|++.++|.+-.+..+
T Consensus 199 e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 199 EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CHHHHHHHHHHcCCCHHHHHHH
Confidence 2455677889999977644433
No 164
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.52 E-value=1.3e+02 Score=31.42 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=58.0
Q ss_pred EEEEeCCC--ChHhHHHHHhcCCCCCCCcEEEEEeC-ChhhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVT--CFSQLESIIRSLDWLTPVSRIIITTR-NKQVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~--~~~~~~~l~~~~~~~~~gs~IlvTTR-~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
++|+|++. +.+..+.|+..+.+-.....+|++|. ...+... ..-...+++..++.++..+.+.+.+-.....- .
T Consensus 121 VvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~ 198 (584)
T PRK14952 121 IFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV--D 198 (584)
T ss_pred EEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--C
Confidence 78999885 44567888878776555666665554 3443322 22246899999999999888877664322111 1
Q ss_pred HHHHHHHHHHhCCCce
Q 012324 80 EKLSSKVMKYAQGVPL 95 (466)
Q Consensus 80 ~~~~~~i~~~c~glPl 95 (466)
.+....|++..+|-+-
T Consensus 199 ~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 199 DAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 3455667888888664
No 165
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=47.43 E-value=97 Score=33.00 Aligned_cols=93 Identities=11% Similarity=0.110 Sum_probs=58.3
Q ss_pred EEEEEeCCCC--hHhHHHHHhcCCCCCCCcEEEEEe-CChhhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTC--FSQLESIIRSLDWLTPVSRIIITT-RNKQVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~--~~~~~~l~~~~~~~~~gs~IlvTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
-++|+|++.. ...+..|...+.+-.....+|++| +...+... ..-...+++.+++.++..+.+...+-..... .
T Consensus 120 KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~--i 197 (725)
T PRK07133 120 KIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS--Y 197 (725)
T ss_pred EEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC--C
Confidence 4789998853 346888877766544455555444 44444322 2223589999999999998888765322211 1
Q ss_pred HHHHHHHHHHHhCCCceee
Q 012324 79 YEKLSSKVMKYAQGVPLAL 97 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai 97 (466)
..+.+..|++.++|-+--+
T Consensus 198 d~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 198 EKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred CHHHHHHHHHHcCCCHHHH
Confidence 1445677888888866433
No 166
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=45.09 E-value=1.1e+02 Score=25.51 Aligned_cols=92 Identities=10% Similarity=0.050 Sum_probs=49.9
Q ss_pred EEEEEeCC------CChHhHHHHHhcCCCCCCCcEEEEEeC-Chhh----HhhcC-cceEEEccCCChhhHHHHHHHhhc
Q 012324 3 VLIVFDDV------TCFSQLESIIRSLDWLTPVSRIIITTR-NKQV----LRNWG-VRKIYEIEALENHHALELFSRHAF 70 (466)
Q Consensus 3 ~LlvlDd~------~~~~~~~~l~~~~~~~~~gs~IlvTTR-~~~v----~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~ 70 (466)
=++|+.+. +....+..+...+.+...++.+|+.+. ..+. .+... ...+++..++...+........+-
T Consensus 59 klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 138 (172)
T PF06144_consen 59 KLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAK 138 (172)
T ss_dssp EEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHH
T ss_pred eEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHH
Confidence 35666665 445678999988887778888888887 3322 22222 345778888888888887777663
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcee
Q 012324 71 KRNHPDVGYEKLSSKVMKYAQGVPLA 96 (466)
Q Consensus 71 ~~~~~~~~~~~~~~~i~~~c~glPla 96 (466)
..+- .-..+.+..+++..++-+.+
T Consensus 139 ~~g~--~i~~~a~~~L~~~~~~d~~~ 162 (172)
T PF06144_consen 139 KNGL--KIDPDAAQYLIERVGNDLSL 162 (172)
T ss_dssp HTT---EE-HHHHHHHHHHHTT-HHH
T ss_pred HcCC--CCCHHHHHHHHHHhChHHHH
Confidence 2221 12245566677776665543
No 167
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=44.42 E-value=85 Score=32.64 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=58.0
Q ss_pred EEEEeCCCC--hHhHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCC-CCCch
Q 012324 4 LIVFDDVTC--FSQLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRN-HPDVG 78 (466)
Q Consensus 4 LlvlDd~~~--~~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~ 78 (466)
++|+|++.. ...++.|...+.+......+|++|.+. .+... ......+++.+++.++....+...+-... ..+
T Consensus 122 VIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is-- 199 (605)
T PRK05896 122 VYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE-- 199 (605)
T ss_pred EEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 589998864 456788877766555566665555433 33222 22235899999999999988887663322 222
Q ss_pred HHHHHHHHHHHhCCCce
Q 012324 79 YEKLSSKVMKYAQGVPL 95 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPl 95 (466)
.+.+..+++.++|-+-
T Consensus 200 -~eal~~La~lS~GdlR 215 (605)
T PRK05896 200 -DNAIDKIADLADGSLR 215 (605)
T ss_pred -HHHHHHHHHHcCCcHH
Confidence 4557788888988654
No 168
>PF14516 AAA_35: AAA-like domain
Probab=44.25 E-value=36 Score=32.48 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=42.5
Q ss_pred ceEEEccCCChhhHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCceeehhhhhhcccC
Q 012324 48 RKIYEIEALENHHALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVPLALKVLGCFLYER 107 (466)
Q Consensus 48 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~ 107 (466)
...++++.++.+|..+|..++-.. .. ....++|....+|+|--+..++..+...
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 358999999999999999876422 11 2227889999999999998998888654
No 169
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=44.19 E-value=1.4e+02 Score=30.93 Aligned_cols=94 Identities=9% Similarity=0.132 Sum_probs=60.4
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
=++|+|++... ..++.+...+.+-.....+|++|.+. .+... ..-...++..+++.++..+.+.+.+...... -
T Consensus 121 KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--i 198 (563)
T PRK06647 121 RVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--Y 198 (563)
T ss_pred EEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--C
Confidence 36889988543 45788887877655666666666443 33222 2223578999999999988888776432211 1
Q ss_pred HHHHHHHHHHHhCCCceeeh
Q 012324 79 YEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~ 98 (466)
..+.+..|++.++|-+-.+.
T Consensus 199 d~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 199 EDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 24566778888888765433
No 170
>PRK04132 replication factor C small subunit; Provisional
Probab=43.62 E-value=1.4e+02 Score=32.58 Aligned_cols=94 Identities=12% Similarity=0.180 Sum_probs=61.8
Q ss_pred EEEEEeCCCChH--hHHHHHhcCCCCCCCcEEEEEeCCh-hhHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCFS--QLESIIRSLDWLTPVSRIIITTRNK-QVLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
-++|+|++.... +.+.|...+..-...+++|.+|.+. .+.... .-...+++.++++++..+.+.+.+-...-. -
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i 709 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--L 709 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--C
Confidence 589999997554 6777777766544566666666554 332222 224689999999999998888765322211 1
Q ss_pred HHHHHHHHHHHhCCCceeeh
Q 012324 79 YEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~ 98 (466)
..+....|++.++|-+..+.
T Consensus 710 ~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 14567789999999775443
No 171
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=43.19 E-value=34 Score=34.49 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=53.0
Q ss_pred EEEEeCCCChHhHHHHHhcCCCC-------------CCCcEE--EEEeCChhhHhhcCc----ceEEEccCCCh-hhHHH
Q 012324 4 LIVFDDVTCFSQLESIIRSLDWL-------------TPVSRI--IITTRNKQVLRNWGV----RKIYEIEALEN-HHALE 63 (466)
Q Consensus 4 LlvlDd~~~~~~~~~l~~~~~~~-------------~~gs~I--lvTTR~~~v~~~~~~----~~~~~l~~L~~-~~~~~ 63 (466)
.||+||+-..-+|-.+++.+.+. .+|.|. +-||....+...|+- +..|+++.++. ++...
T Consensus 601 iivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~ 680 (744)
T KOG0741|consen 601 IIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLE 680 (744)
T ss_pred EEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHH
Confidence 58999997666665555444331 345554 457777788888763 34899999998 67777
Q ss_pred HHHHhh-cCCCCCCchHHHHHHHHHHHh
Q 012324 64 LFSRHA-FKRNHPDVGYEKLSSKVMKYA 90 (466)
Q Consensus 64 Lf~~~~-~~~~~~~~~~~~~~~~i~~~c 90 (466)
.+...- |. +...+.++++...+|
T Consensus 681 vl~~~n~fs----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 681 VLEELNIFS----DDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHccCCC----cchhHHHHHHHhccc
Confidence 776543 32 334455666666666
No 172
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=42.38 E-value=1.2e+02 Score=28.83 Aligned_cols=86 Identities=12% Similarity=0.248 Sum_probs=57.8
Q ss_pred EEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
.+|+|++... ...+.|+..+-+-..+..+|++|.+. .+... ..-...+.+.+++.+++.+.+...... .
T Consensus 110 V~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~----~--- 182 (325)
T PRK06871 110 VVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA----E--- 182 (325)
T ss_pred EEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc----C---
Confidence 5678888654 35778887777767777777777765 33222 222358999999999999888765411 1
Q ss_pred HHHHHHHHHHhCCCcee
Q 012324 80 EKLSSKVMKYAQGVPLA 96 (466)
Q Consensus 80 ~~~~~~i~~~c~glPla 96 (466)
...+...++.++|.|..
T Consensus 183 ~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 183 ISEILTALRINYGRPLL 199 (325)
T ss_pred hHHHHHHHHHcCCCHHH
Confidence 11245567788999963
No 173
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.49 E-value=1.4e+02 Score=31.32 Aligned_cols=93 Identities=14% Similarity=0.212 Sum_probs=58.2
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCC-CCCc
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRN-HPDV 77 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~ 77 (466)
=++|+|++... +.++.|+..+.+-.....+|++|.+. .+... ..-...+++..++.++....+.+.+-... ..+
T Consensus 123 KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is- 201 (620)
T PRK14948 123 KVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE- 201 (620)
T ss_pred eEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC-
Confidence 36899998744 45788887776544555555555443 22222 22235788889999988887777653322 222
Q ss_pred hHHHHHHHHHHHhCCCceeeh
Q 012324 78 GYEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~ 98 (466)
.+.+..|++.++|-+..+.
T Consensus 202 --~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 202 --PEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred --HHHHHHHHHHcCCCHHHHH
Confidence 3457788888888775443
No 174
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=41.31 E-value=23 Score=19.67 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=8.8
Q ss_pred CCCcEEEccCCCcc
Q 012324 381 SSPIILNLAKTNIE 394 (466)
Q Consensus 381 ~~L~~L~l~~~~l~ 394 (466)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666665
No 175
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=40.94 E-value=1.2e+02 Score=27.81 Aligned_cols=66 Identities=6% Similarity=0.155 Sum_probs=40.5
Q ss_pred EEEEeCCCC----------hHhHHHHHhcCCCCCCCcEEEEEeCChhh----------HhhcCcceEEEccCCChhhHHH
Q 012324 4 LIVFDDVTC----------FSQLESIIRSLDWLTPVSRIIITTRNKQV----------LRNWGVRKIYEIEALENHHALE 63 (466)
Q Consensus 4 LlvlDd~~~----------~~~~~~l~~~~~~~~~gs~IlvTTR~~~v----------~~~~~~~~~~~l~~L~~~~~~~ 63 (466)
.|++|++.. .+..+.+...+.+....-.+++++...+. ...+ ...+++++++.+|-.+
T Consensus 108 VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 108 VLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELME 185 (261)
T ss_pred EEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHH
Confidence 688999864 22355565555443333345555544332 1112 3468999999999999
Q ss_pred HHHHhhcC
Q 012324 64 LFSRHAFK 71 (466)
Q Consensus 64 Lf~~~~~~ 71 (466)
++.+.+-.
T Consensus 186 Il~~~~~~ 193 (261)
T TIGR02881 186 IAERMVKE 193 (261)
T ss_pred HHHHHHHH
Confidence 99987743
No 176
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=39.64 E-value=2.7e+02 Score=25.80 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=56.7
Q ss_pred eEEEEEeCCCC---hHhHHHHHhcCCCCCCCcEEEEEeCChhh-------HhhcCcceEEEccCCChhhHHHHHHHhhcC
Q 012324 2 KVLIVFDDVTC---FSQLESIIRSLDWLTPVSRIIITTRNKQV-------LRNWGVRKIYEIEALENHHALELFSRHAFK 71 (466)
Q Consensus 2 r~LlvlDd~~~---~~~~~~l~~~~~~~~~gs~IlvTTR~~~v-------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 71 (466)
+-++|++++.. ...++.+...+++...+..+++++...+. ........++....++..+-.......+-.
T Consensus 47 ~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 126 (302)
T TIGR01128 47 RRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKK 126 (302)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHH
Confidence 44688888864 34588888777766666666666643221 111123457888888888888887776643
Q ss_pred CC-CCCchHHHHHHHHHHHhCCCcee
Q 012324 72 RN-HPDVGYEKLSSKVMKYAQGVPLA 96 (466)
Q Consensus 72 ~~-~~~~~~~~~~~~i~~~c~glPla 96 (466)
.+ ..+ .+.+..+++.++|-...
T Consensus 127 ~g~~i~---~~a~~~l~~~~~~d~~~ 149 (302)
T TIGR01128 127 LGLRID---PDAVQLLAELVEGNLLA 149 (302)
T ss_pred cCCCCC---HHHHHHHHHHhCcHHHH
Confidence 22 222 45566777777765543
No 177
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.59 E-value=8.9 Score=38.45 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=8.2
Q ss_pred CcEeecccCcCCCcC
Q 012324 406 LRYLLLSYSERFQSL 420 (466)
Q Consensus 406 L~~L~l~~~~~~~~~ 420 (466)
|+.|.+.+|++++..
T Consensus 272 Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 272 LEELVLEGNPLCTTF 286 (585)
T ss_pred HHHeeecCCccccch
Confidence 555566666555433
No 178
>CHL00181 cbbX CbbX; Provisional
Probab=38.84 E-value=2.1e+02 Score=26.59 Aligned_cols=67 Identities=6% Similarity=0.097 Sum_probs=42.8
Q ss_pred EEEEeCCCC-----------hHhHHHHHhcCCCCCCCcEEEEEeCChhhHhhc--------CcceEEEccCCChhhHHHH
Q 012324 4 LIVFDDVTC-----------FSQLESIIRSLDWLTPVSRIIITTRNKQVLRNW--------GVRKIYEIEALENHHALEL 64 (466)
Q Consensus 4 LlvlDd~~~-----------~~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~--------~~~~~~~l~~L~~~~~~~L 64 (466)
.|+||++.. .+..+.|...+.+...+.+||+++....+.... .....+.+++++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 688999853 223445555554444556677777654432211 1235899999999999999
Q ss_pred HHHhhc
Q 012324 65 FSRHAF 70 (466)
Q Consensus 65 f~~~~~ 70 (466)
+.+.+-
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 988763
No 179
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.02 E-value=1.3e+02 Score=30.73 Aligned_cols=94 Identities=10% Similarity=0.069 Sum_probs=57.8
Q ss_pred EEEEEeCCCC--hHhHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTC--FSQLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~--~~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
=++|+|++.. .+..+.++..+.+-...+++|++|.+. .+... ..-...+++++++.++..+.+.+.+-..+..-
T Consensus 121 kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-- 198 (509)
T PRK14958 121 KVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-- 198 (509)
T ss_pred EEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 3688999864 345777777776655667677665443 32211 11235788999999988877766653222111
Q ss_pred HHHHHHHHHHHhCCCceeeh
Q 012324 79 YEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~ 98 (466)
..+....|++.++|-+..+.
T Consensus 199 ~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 199 ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred CHHHHHHHHHHcCCcHHHHH
Confidence 13445678888888765443
No 180
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=37.15 E-value=1.3e+02 Score=28.59 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=56.7
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
=.+|+|++... ...+.|+..+.+-. .+.+|++|.+. .+... ..-...++++++++++..+.+.+....+..
T Consensus 126 kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~---- 200 (314)
T PRK07399 126 KVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL---- 200 (314)
T ss_pred eEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----
Confidence 36788888644 34777777765545 44566565544 33222 223468999999999999999886422111
Q ss_pred HHHHHHHHHHHhCCCceeeh
Q 012324 79 YEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~ 98 (466)
......++...+|-|..+.
T Consensus 201 -~~~~~~l~~~a~Gs~~~al 219 (314)
T PRK07399 201 -NINFPELLALAQGSPGAAI 219 (314)
T ss_pred -hhHHHHHHHHcCCCHHHHH
Confidence 1112467888899996543
No 181
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=36.55 E-value=50 Score=26.20 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=23.7
Q ss_pred eEEEEEeCCCCh-----HhHHHHHhcCCCC---CCCcEEEEEeCChh
Q 012324 2 KVLIVFDDVTCF-----SQLESIIRSLDWL---TPVSRIIITTRNKQ 40 (466)
Q Consensus 2 r~LlvlDd~~~~-----~~~~~l~~~~~~~---~~gs~IlvTTR~~~ 40 (466)
..++|+||++.. ..+..+....... ..+..||+||....
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 468999999853 2233333333321 35678888887653
No 182
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=34.71 E-value=61 Score=27.16 Aligned_cols=54 Identities=15% Similarity=0.274 Sum_probs=32.9
Q ss_pred EEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChhh-Hhh-cCcceEEEccCCC
Q 012324 4 LIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQV-LRN-WGVRKIYEIEALE 57 (466)
Q Consensus 4 LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~v-~~~-~~~~~~~~l~~L~ 57 (466)
.+|+||+... +..+.|+..+-+-..++++|++|++.+- ..- ..-...+.+++++
T Consensus 105 viiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 105 VIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 5789998754 4578888777766788999999988742 211 2223466666553
No 183
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=34.38 E-value=2.7e+02 Score=28.90 Aligned_cols=93 Identities=10% Similarity=0.109 Sum_probs=56.7
Q ss_pred eEEEEEeCCCC--hHhHHHHHhcCCCCCCCcEEEEEe-CChhhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTC--FSQLESIIRSLDWLTPVSRIIITT-RNKQVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~--~~~~~~l~~~~~~~~~gs~IlvTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+=++|+|++.. ...++.|...+.+-.....+|++| .-..+... ......++..+++.++..+.+...+-..+..
T Consensus 120 ~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~-- 197 (559)
T PRK05563 120 YKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE-- 197 (559)
T ss_pred eEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--
Confidence 34678998864 446888887776544455555544 33333222 1223578899999999988888766332211
Q ss_pred hHHHHHHHHHHHhCCCcee
Q 012324 78 GYEKLSSKVMKYAQGVPLA 96 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPla 96 (466)
-..+.+..|++.++|-+..
T Consensus 198 i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 198 YEDEALRLIARAAEGGMRD 216 (559)
T ss_pred CCHHHHHHHHHHcCCCHHH
Confidence 1145566778888876643
No 184
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=30.92 E-value=2.1 Score=43.06 Aligned_cols=129 Identities=23% Similarity=0.165 Sum_probs=76.0
Q ss_pred cccCEEecCCCCCCCccCCCC------CCcccEEeecCccCccc-----Chhhhcc-CCCCeeeccccccccc----ccc
Q 012324 288 EFLTKLDLSGCSKLKRLPEIS------SGNVCWLFLRGTAIEEL-----PSSIDRL-RRLGYLNLSDCKRLKS----LPS 351 (466)
Q Consensus 288 ~~L~~L~l~~~~~~~~~~~~~------~~~l~~L~l~~~~i~~l-----p~~l~~l-~~L~~L~l~~~~~~~~----~p~ 351 (466)
..+..|++.+|.+........ ...+..|++++|++... -..+... ..+++|++..|..... +..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 447888889887665533321 13457788888877721 1122222 4566677777655433 334
Q ss_pred ccCCCCCCCEEEecCCCCCC----CCCccc----CCCCCCcEEEccCCCcc-----ccchhhhccCC-CcEeecccCcC
Q 012324 352 SLCKLKSLKVLNLCGCSNLQ----RLPECL----GQLSSPIILNLAKTNIE-----RIPESIIQLFV-LRYLLLSYSER 416 (466)
Q Consensus 352 ~~~~l~~L~~L~l~~~~~~~----~~p~~l----~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~-L~~L~l~~~~~ 416 (466)
.+.....++.++++.|.+.. .+++.+ ....++++|.+..+.++ .+-..+...+. ++.|++..|..
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 55667778888887766531 122233 34677888888887776 12223455555 66688877653
No 185
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=30.13 E-value=2.5e+02 Score=26.70 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=45.2
Q ss_pred EEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChh-hHhh-cCcceEEEccCCChhhHHHHHHHh
Q 012324 4 LIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEIEALENHHALELFSRH 68 (466)
Q Consensus 4 LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 68 (466)
.+|+|++... +.-+.|+..+.+-..++.+|.+|.+.. +... ..-...+++.+++.++..+.+...
T Consensus 113 vviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 113 VYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 5788888643 346778777777677787888887653 2221 222468999999999998888653
No 186
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=29.73 E-value=2.9e+02 Score=26.03 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=47.3
Q ss_pred EEEEEeCC-----CChHhHHHHHhcCCCCCCCcEEEEEeCCh-----hhHhhcC-cceEEEcc---CCChhhHHHHHHHh
Q 012324 3 VLIVFDDV-----TCFSQLESIIRSLDWLTPVSRIIITTRNK-----QVLRNWG-VRKIYEIE---ALENHHALELFSRH 68 (466)
Q Consensus 3 ~LlvlDd~-----~~~~~~~~l~~~~~~~~~gs~IlvTTR~~-----~v~~~~~-~~~~~~l~---~L~~~~~~~Lf~~~ 68 (466)
=++|++|. +..+.++.+...+.+..+.+.+|+++... ...+... ...+.... ..+.++........
T Consensus 63 rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~ 142 (326)
T PRK07452 63 RLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERT 142 (326)
T ss_pred eEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHH
Confidence 35677775 23345677777776656677777754332 1112111 12233333 33444444555555
Q ss_pred hcCCCCCCchHHHHHHHHHHHhCCCceee
Q 012324 69 AFKRNHPDVGYEKLSSKVMKYAQGVPLAL 97 (466)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~~~c~glPlai 97 (466)
+-..+-. -..+.++.+++.+++...++
T Consensus 143 ~~~~g~~--i~~~a~~~L~~~~g~dl~~l 169 (326)
T PRK07452 143 AQELGVK--LTPEAAELLAEAVGNDSRRL 169 (326)
T ss_pred HHHcCCC--CCHHHHHHHHHHhCccHHHH
Confidence 5222211 12466777788787766544
No 187
>PRK14700 recombination factor protein RarA; Provisional
Probab=29.62 E-value=1.5e+02 Score=27.76 Aligned_cols=70 Identities=19% Similarity=0.153 Sum_probs=44.1
Q ss_pred CCCCCCcEEEE--EeCChhhHhh---cCcceEEEccCCChhhHHHHHHHhhcCCC----CCCchHHHHHHHHHHHhCCC
Q 012324 24 DWLTPVSRIII--TTRNKQVLRN---WGVRKIYEIEALENHHALELFSRHAFKRN----HPDVGYEKLSSKVMKYAQGV 93 (466)
Q Consensus 24 ~~~~~gs~Ilv--TTR~~~v~~~---~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~----~~~~~~~~~~~~i~~~c~gl 93 (466)
|....|.-+++ ||.+....-. ..-..++++++|+.++..+++++-.-... ..-.-..+....|++.|+|-
T Consensus 2 p~vE~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GD 80 (300)
T PRK14700 2 PYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGD 80 (300)
T ss_pred CCccCCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCH
Confidence 44567776665 6666633211 12236999999999999999988653211 11123356677788888884
No 188
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.24 E-value=2.6e+02 Score=29.14 Aligned_cols=89 Identities=11% Similarity=0.200 Sum_probs=54.7
Q ss_pred EEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEe-CChhhHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITT-RNKQVLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
++|+|++... ...+.|...+.+-....++|++| ....+... ..-...++++.++.++....+...+-..+.. -.
T Consensus 122 VvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~ 199 (576)
T PRK14965 122 IFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--IS 199 (576)
T ss_pred EEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CC
Confidence 6889988643 45777777766545566666555 43444322 2223578899999999888777655322211 11
Q ss_pred HHHHHHHHHHhCCCc
Q 012324 80 EKLSSKVMKYAQGVP 94 (466)
Q Consensus 80 ~~~~~~i~~~c~glP 94 (466)
.+....|++.++|-.
T Consensus 200 ~~al~~la~~a~G~l 214 (576)
T PRK14965 200 DAALALVARKGDGSM 214 (576)
T ss_pred HHHHHHHHHHcCCCH
Confidence 455667888888754
No 189
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=26.71 E-value=2.7e+02 Score=26.21 Aligned_cols=65 Identities=12% Similarity=0.306 Sum_probs=44.8
Q ss_pred EEEEeCCCChH--hHHHHHhcCCCCCCCcEEEEEeCCh-hhHhh-cCcceEEEccCCChhhHHHHHHHh
Q 012324 4 LIVFDDVTCFS--QLESIIRSLDWLTPVSRIIITTRNK-QVLRN-WGVRKIYEIEALENHHALELFSRH 68 (466)
Q Consensus 4 LlvlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 68 (466)
++|+|++.... ..+.++..+.+-..++.+|++|.+. .+... ..-...+++.++++++..+.+...
T Consensus 93 vvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 93 ILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred EEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 57888876443 4777887877767777777766544 33322 233568999999999998777653
No 190
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=26.16 E-value=1.9e+02 Score=27.08 Aligned_cols=65 Identities=12% Similarity=0.235 Sum_probs=38.5
Q ss_pred EEEEEeCCCCh---HhHHHHHhcCCCCCCCcEEEEEeCChhhH-hh-cCcceEEEccCCChhhHHHHHHH
Q 012324 3 VLIVFDDVTCF---SQLESIIRSLDWLTPVSRIIITTRNKQVL-RN-WGVRKIYEIEALENHHALELFSR 67 (466)
Q Consensus 3 ~LlvlDd~~~~---~~~~~l~~~~~~~~~gs~IlvTTR~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~ 67 (466)
-++|+||+... +....+...+.....++++|+||...... .. ......+.++..+.++..+++..
T Consensus 102 ~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 102 KVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 36899999744 22344444444445677888888654311 11 11224677777888887766654
No 191
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=25.12 E-value=1.7e+02 Score=27.54 Aligned_cols=46 Identities=22% Similarity=0.134 Sum_probs=33.0
Q ss_pred EEEccCCChhhHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCce
Q 012324 50 IYEIEALENHHALELFSRHAFKRNHPD-VGYEKLSSKVMKYAQGVPL 95 (466)
Q Consensus 50 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~c~glPl 95 (466)
+++++.++.+|+..++..+.-.+--.. ...+...+++.-..+|.|-
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~ 304 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPR 304 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHH
Confidence 789999999999999988874433222 2335566667666788884
No 192
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=24.75 E-value=2.2e+02 Score=27.23 Aligned_cols=87 Identities=13% Similarity=0.216 Sum_probs=57.7
Q ss_pred EEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChh-hHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 4 LIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 4 LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
.+|+|++... +.-+.|+..+-+-..++.+|.+|.+.+ +... ..-...+.+++++++++.+.+.... ..+
T Consensus 111 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~----~~~--- 183 (334)
T PRK07993 111 VVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV----TMS--- 183 (334)
T ss_pred EEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc----CCC---
Confidence 5788887644 457777777766667777777777653 3322 2223478999999999988776532 111
Q ss_pred HHHHHHHHHHhCCCceee
Q 012324 80 EKLSSKVMKYAQGVPLAL 97 (466)
Q Consensus 80 ~~~~~~i~~~c~glPlai 97 (466)
.+.+..+++.++|.|..+
T Consensus 184 ~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 184 QDALLAALRLSAGAPGAA 201 (334)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 233667889999999643
No 193
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=23.07 E-value=2.2e+02 Score=25.58 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=52.6
Q ss_pred EEEEEeCCCChH--hHHHHHhcCCCC--------C-----------CCcEEEEEeCChhhHhhcCc--ceEEEccCCChh
Q 012324 3 VLIVFDDVTCFS--QLESIIRSLDWL--------T-----------PVSRIIITTRNKQVLRNWGV--RKIYEIEALENH 59 (466)
Q Consensus 3 ~LlvlDd~~~~~--~~~~l~~~~~~~--------~-----------~gs~IlvTTR~~~v~~~~~~--~~~~~l~~L~~~ 59 (466)
-+|.+|.+.... +-+.|.+..-++ + +-+-|=.|||...+..-... ....+++..+.+
T Consensus 103 ~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~ 182 (233)
T PF05496_consen 103 DILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEE 182 (233)
T ss_dssp -EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THH
T ss_pred cEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHH
Confidence 467789986443 444555443321 1 12334458887655443322 246789999999
Q ss_pred hHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCcee
Q 012324 60 HALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVPLA 96 (466)
Q Consensus 60 ~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 96 (466)
|-.++..+.+..-. -.-.++.+.+|++.+.|-|--
T Consensus 183 el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRi 217 (233)
T PF05496_consen 183 ELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRI 217 (233)
T ss_dssp HHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHH
T ss_pred HHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHH
Confidence 99999998763211 123367889999999999953
No 194
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=22.93 E-value=1.2e+02 Score=25.82 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=24.5
Q ss_pred EEEEeCCCChH-----hHHHHHhcCCCCCCCcEEEEEeCChh
Q 012324 4 LIVFDDVTCFS-----QLESIIRSLDWLTPVSRIIITTRNKQ 40 (466)
Q Consensus 4 LlvlDd~~~~~-----~~~~l~~~~~~~~~gs~IlvTTR~~~ 40 (466)
++|||.+...- ..+.+...+.....+.-||+|-|+..
T Consensus 100 lvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 100 LVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred EEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 78999874222 23445555555566778999999883
No 195
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=22.87 E-value=5.5e+02 Score=25.49 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=64.5
Q ss_pred EEEEEeCCCCh-----------HhHHHHHhcCCCCCCCcEEEEEeCChhhHhhc----C--cceEEEccCCChhhHHHHH
Q 012324 3 VLIVFDDVTCF-----------SQLESIIRSLDWLTPVSRIIITTRNKQVLRNW----G--VRKIYEIEALENHHALELF 65 (466)
Q Consensus 3 ~LlvlDd~~~~-----------~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~----~--~~~~~~l~~L~~~~~~~Lf 65 (466)
=+||||++-.. .+|...... .+--.||++|-+....+.. . .-+.+.+...+.+.|..+.
T Consensus 150 PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV 225 (431)
T PF10443_consen 150 PVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYV 225 (431)
T ss_pred CEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHH
Confidence 36899988421 247765544 3344688888777665543 2 2358899999999999988
Q ss_pred HHhhcCCCCC-------------C-----chHHHHHHHHHHHhCCCceeehhhhhhccc
Q 012324 66 SRHAFKRNHP-------------D-----VGYEKLSSKVMKYAQGVPLALKVLGCFLYE 106 (466)
Q Consensus 66 ~~~~~~~~~~-------------~-----~~~~~~~~~i~~~c~glPlai~~~~~~l~~ 106 (466)
..+.-..... + .....--...+...||--.-+..+++.++.
T Consensus 226 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 226 LSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 8876432110 0 123334455777788888888888877774
No 196
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=22.74 E-value=1e+02 Score=24.59 Aligned_cols=88 Identities=9% Similarity=-0.028 Sum_probs=53.2
Q ss_pred CCcEEEEEeCChhhHhhcCcceEEEccCCChhhHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCceeehhhhhhcccC
Q 012324 28 PVSRIIITTRNKQVLRNWGVRKIYEIEALENHHALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVPLALKVLGCFLYER 107 (466)
Q Consensus 28 ~gs~IlvTTR~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~ 107 (466)
.|- .||.+|-.. |..-.-.+....-+|++.-+...--+++.+=-+.+.+-++.-+.|....+|+.-.|..+++.-...
T Consensus 23 ~g~-kVvSvRlr~-AE~esfs~q~~~lGl~~n~alRVavrri~GFLEiDa~tr~~l~~il~sIg~la~Nin~i~~Aa~~~ 100 (147)
T PF07328_consen 23 EGF-KVVSVRLRS-AEYESFSAQARELGLSDNMALRVAVRRIGGFLEIDAETRQKLEDILRSIGGLATNINQILKAANRT 100 (147)
T ss_pred cCc-eEEeehhhH-HHHHHHHHHHHHhCCchhhHHHHHHHHHcchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344 355666553 111111223344567888888877777744335566667778888888899888888888766555
Q ss_pred CHHHHHHHHH
Q 012324 108 EKEVSESAIN 117 (466)
Q Consensus 108 ~~~~w~~~~~ 117 (466)
+...++.+.+
T Consensus 101 ~~pd~e~f~a 110 (147)
T PF07328_consen 101 PRPDYEAFRA 110 (147)
T ss_pred CCccHHHHHH
Confidence 4333443333
No 197
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=21.74 E-value=1.1e+02 Score=26.97 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCCh
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNK 39 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 39 (466)
+.++|+|.+-+. +++..+... .+.|||||++--..
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred ceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 457999999654 467776665 47899999987544
No 198
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=21.35 E-value=1.3e+02 Score=26.03 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=25.1
Q ss_pred EEEEeCCCChH-----hHHHHHhcCCCCCCCcEEEEEeCCh
Q 012324 4 LIVFDDVTCFS-----QLESIIRSLDWLTPVSRIIITTRNK 39 (466)
Q Consensus 4 LlvlDd~~~~~-----~~~~l~~~~~~~~~gs~IlvTTR~~ 39 (466)
++|||.+...- ..+.+...+.....+.-||+|-|..
T Consensus 118 lvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 118 LVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred EEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 78999884322 2455555555556677899999987
No 199
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.89 E-value=57 Score=33.04 Aligned_cols=62 Identities=18% Similarity=0.035 Sum_probs=27.0
Q ss_pred cCcccCEEecCCCCCCCccC----CCCCCcccEEeecCc--cCcccChhhh--ccCCCCeeeccccccccc
Q 012324 286 NLEFLTKLDLSGCSKLKRLP----EISSGNVCWLFLRGT--AIEELPSSID--RLRRLGYLNLSDCKRLKS 348 (466)
Q Consensus 286 ~l~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~l~~~--~i~~lp~~l~--~l~~L~~L~l~~~~~~~~ 348 (466)
+.+.+..+++++|++-..-. ....++++.|+|++| .+...++ +. +...|++|.+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-LDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh-hhhhcCCCHHHeeecCCccccc
Confidence 34555555666654322111 122345566666665 2222111 11 223455566666554443
No 200
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=20.68 E-value=4.7e+02 Score=24.42 Aligned_cols=87 Identities=15% Similarity=0.089 Sum_probs=56.7
Q ss_pred EEEccCCChhhHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCceeehhhhhhccc-------C----CHHHHHHHHHH
Q 012324 50 IYEIEALENHHALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVPLALKVLGCFLYE-------R----EKEVSESAINK 118 (466)
Q Consensus 50 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~-------~----~~~~w~~~~~~ 118 (466)
.+++++.+++|....+.+..-.++-.-| .+++.+|+++++|.---...+-...+- + ..-.|+-+..+
T Consensus 180 ~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e 257 (351)
T KOG2035|consen 180 FIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQE 257 (351)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHH
Confidence 6899999999999999988754443333 788999999999854322222222221 1 35679988887
Q ss_pred HHhc-----cchhHHHHHHHHHhcC
Q 012324 119 LQRI-----LHPSILEVLKISYDSL 138 (466)
Q Consensus 119 l~~~-----~~~~~~~~l~~sy~~L 138 (466)
.... ....+..+-..-|+-|
T Consensus 258 ~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 258 IARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHH
Confidence 5443 2344555556666555
No 201
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=20.33 E-value=2.9e+02 Score=25.93 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=26.7
Q ss_pred CeEEEEEeCCCChH------hHHHHHhcCCCCCCCcEEEEEeCChhhHhhc
Q 012324 1 MKVLIVFDDVTCFS------QLESIIRSLDWLTPVSRIIITTRNKQVLRNW 45 (466)
Q Consensus 1 kr~LlvlDd~~~~~------~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~ 45 (466)
+|..+|+||++... -|+.+...+. .++..+|+..-.+.++...
T Consensus 172 ~~iViiIDdLDR~~~~~i~~~l~~ik~~~~--~~~i~~Il~~D~~~l~~ai 220 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPEEIVELLEAIKLLLD--FPNIIFILAFDPEILEKAI 220 (325)
T ss_pred ceEEEEEcchhcCCcHHHHHHHHHHHHhcC--CCCeEEEEEecHHHHHHHH
Confidence 58999999998643 2555554433 3666666666555555433
Done!