Query 012324
Match_columns 466
No_of_seqs 230 out of 2608
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 07:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.5E-31 8.6E-36 270.2 9.4 201 1-211 243-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 1.7E-26 5.9E-31 258.0 9.8 199 1-210 236-452 (1249)
3 1vt4_I APAF-1 related killer D 99.9 3.5E-25 1.2E-29 229.5 6.9 180 1-203 244-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 4.7E-23 1.6E-27 212.2 10.0 195 1-207 236-449 (591)
5 4fcg_A Uncharacterized protein 99.9 2.7E-21 9.3E-26 183.8 14.6 176 256-433 119-306 (328)
6 1ogq_A PGIP-2, polygalacturona 99.8 9.4E-21 3.2E-25 179.0 9.5 165 259-424 96-264 (313)
7 4fcg_A Uncharacterized protein 99.8 4.8E-19 1.6E-23 168.3 16.6 175 257-438 97-284 (328)
8 3rgz_A Protein brassinosteroid 99.8 2.6E-19 8.9E-24 189.6 14.0 93 258-350 460-555 (768)
9 3rgz_A Protein brassinosteroid 99.8 3.6E-19 1.2E-23 188.6 13.7 167 257-423 483-723 (768)
10 1ogq_A PGIP-2, polygalacturona 99.8 4.6E-19 1.6E-23 167.4 12.6 180 257-442 118-302 (313)
11 1p9a_G Platelet glycoprotein I 99.8 2.2E-17 7.4E-22 153.9 17.8 177 264-444 31-208 (290)
12 1ozn_A Reticulon 4 receptor; N 99.7 2.1E-17 7.1E-22 153.9 16.3 184 258-444 50-238 (285)
13 1ozn_A Reticulon 4 receptor; N 99.7 4.3E-17 1.5E-21 151.7 17.4 179 263-444 31-214 (285)
14 3rfs_A Internalin B, repeat mo 99.7 9.1E-17 3.1E-21 148.4 18.1 163 257-421 56-222 (272)
15 4eco_A Uncharacterized protein 99.7 4.2E-18 1.4E-22 176.4 9.8 161 259-422 201-394 (636)
16 2o6q_A Variable lymphocyte rec 99.7 2.5E-16 8.6E-21 145.3 19.5 178 264-444 37-218 (270)
17 2ft3_A Biglycan; proteoglycan, 99.7 1.1E-16 3.9E-21 152.3 17.2 178 257-439 71-272 (332)
18 3m19_A Variable lymphocyte rec 99.7 2.3E-16 7.8E-21 143.9 18.1 156 264-419 35-194 (251)
19 1xku_A Decorin; proteoglycan, 99.7 3.7E-16 1.3E-20 148.6 20.2 185 257-446 69-278 (330)
20 1wwl_A Monocyte differentiatio 99.7 8.1E-18 2.8E-22 158.8 7.8 160 263-424 94-272 (312)
21 4eco_A Uncharacterized protein 99.7 5.5E-18 1.9E-22 175.5 7.0 168 256-425 239-423 (636)
22 4ecn_A Leucine-rich repeat pro 99.7 2.1E-17 7.1E-22 174.8 11.2 164 256-422 481-662 (876)
23 3v47_A TOLL-like receptor 5B a 99.7 3.8E-17 1.3E-21 162.7 12.2 131 311-444 276-408 (455)
24 2o6q_A Variable lymphocyte rec 99.7 5.1E-16 1.7E-20 143.2 18.9 164 257-420 54-221 (270)
25 3rfs_A Internalin B, repeat mo 99.7 5.3E-16 1.8E-20 143.3 18.7 181 259-444 36-218 (272)
26 4ecn_A Leucine-rich repeat pro 99.7 4.3E-17 1.5E-21 172.4 12.2 165 257-425 441-639 (876)
27 3zyj_A Leucine-rich repeat-con 99.7 2.4E-16 8.1E-21 156.1 16.8 159 258-418 82-245 (440)
28 3zyi_A Leucine-rich repeat-con 99.7 4.5E-16 1.5E-20 154.7 18.7 184 258-444 93-303 (452)
29 2z80_A TOLL-like receptor 2, v 99.7 5E-17 1.7E-21 156.2 11.0 161 258-418 70-236 (353)
30 4ezg_A Putative uncharacterize 99.7 8.1E-17 2.8E-21 141.2 11.3 154 260-417 40-194 (197)
31 1h6u_A Internalin H; cell adhe 99.7 3.3E-16 1.1E-20 147.3 16.2 172 259-443 58-229 (308)
32 2z62_A TOLL-like receptor 4, v 99.7 1.7E-16 5.7E-21 147.0 13.8 183 259-444 47-237 (276)
33 2z66_A Variable lymphocyte rec 99.7 2.5E-16 8.7E-21 148.1 14.8 180 262-444 76-261 (306)
34 2z66_A Variable lymphocyte rec 99.7 6.9E-17 2.4E-21 152.0 10.5 184 258-445 46-237 (306)
35 3oja_B Anopheles plasmodium-re 99.7 5.2E-16 1.8E-20 159.7 17.7 107 328-441 249-355 (597)
36 3v47_A TOLL-like receptor 5B a 99.7 2.2E-16 7.7E-21 157.0 13.4 110 335-447 277-387 (455)
37 3zyi_A Leucine-rich repeat-con 99.7 4.9E-16 1.7E-20 154.4 15.4 158 264-422 75-236 (452)
38 3oja_B Anopheles plasmodium-re 99.7 2.7E-16 9.1E-21 161.8 13.9 88 352-443 249-336 (597)
39 1wwl_A Monocyte differentiatio 99.7 1.5E-16 5.1E-21 150.1 11.0 193 245-445 102-310 (312)
40 3o6n_A APL1; leucine-rich repe 99.7 1.3E-15 4.3E-20 148.5 17.7 63 353-415 244-306 (390)
41 3zyj_A Leucine-rich repeat-con 99.7 4.6E-16 1.6E-20 154.0 14.8 160 264-424 64-227 (440)
42 3m19_A Variable lymphocyte rec 99.7 2E-15 6.7E-20 137.7 17.6 175 265-445 15-193 (251)
43 3o6n_A APL1; leucine-rich repe 99.7 1E-15 3.6E-20 149.0 16.5 84 331-415 246-329 (390)
44 1h6u_A Internalin H; cell adhe 99.7 3.7E-16 1.2E-20 147.0 12.5 176 260-448 37-212 (308)
45 2id5_A Lingo-1, leucine rich r 99.7 7.9E-16 2.7E-20 154.1 15.6 167 257-423 49-219 (477)
46 3t6q_A CD180 antigen; protein- 99.7 5.8E-16 2E-20 159.8 15.0 160 258-417 295-462 (606)
47 3oja_A Leucine-rich immune mol 99.7 2.7E-16 9.3E-21 157.4 12.1 179 257-443 51-249 (487)
48 2z62_A TOLL-like receptor 4, v 99.7 7.6E-16 2.6E-20 142.6 14.3 159 264-423 28-195 (276)
49 2id5_A Lingo-1, leucine rich r 99.7 1.1E-15 3.8E-20 153.0 16.4 159 257-415 97-259 (477)
50 3vq2_A TLR4, TOLL-like recepto 99.7 5.9E-16 2E-20 159.8 14.7 181 258-443 370-557 (606)
51 1p9a_G Platelet glycoprotein I 99.7 2.5E-15 8.4E-20 140.0 16.5 159 257-418 48-209 (290)
52 1h6t_A Internalin B; cell adhe 99.6 2E-15 6.9E-20 140.7 15.2 152 259-418 63-214 (291)
53 2o6s_A Variable lymphocyte rec 99.6 1.5E-15 5.2E-20 134.3 13.4 159 263-427 27-188 (208)
54 3vq2_A TLR4, TOLL-like recepto 99.6 4.9E-16 1.7E-20 160.4 11.2 164 258-421 393-562 (606)
55 1xku_A Decorin; proteoglycan, 99.6 1.3E-15 4.5E-20 144.8 12.9 178 264-446 52-255 (330)
56 2xwt_C Thyrotropin receptor; s 99.6 1.2E-15 4E-20 138.1 11.9 179 265-447 32-221 (239)
57 4fmz_A Internalin; leucine ric 99.6 2.9E-15 9.8E-20 143.5 15.1 175 260-446 62-258 (347)
58 2z7x_B TOLL-like receptor 1, v 99.6 2.6E-15 8.9E-20 152.0 15.6 156 285-445 321-482 (520)
59 1h6t_A Internalin B; cell adhe 99.6 2.7E-15 9.4E-20 139.8 14.2 172 259-443 41-212 (291)
60 3o53_A Protein LRIM1, AGAP0063 99.6 5.9E-16 2E-20 146.3 9.6 176 260-444 54-250 (317)
61 2ft3_A Biglycan; proteoglycan, 99.6 4.1E-15 1.4E-19 141.5 15.5 178 264-443 123-306 (332)
62 2v70_A SLIT-2, SLIT homolog 2 99.6 4.7E-15 1.6E-19 132.2 14.7 152 267-421 14-170 (220)
63 4glp_A Monocyte differentiatio 99.6 2.6E-16 8.8E-21 148.3 6.8 175 261-443 114-306 (310)
64 3oja_A Leucine-rich immune mol 99.6 4E-16 1.4E-20 156.2 8.4 179 262-445 32-228 (487)
65 1m9s_A Internalin B; cell inva 99.6 6.1E-15 2.1E-19 150.7 17.0 154 258-419 59-212 (605)
66 4glp_A Monocyte differentiatio 99.6 2.2E-15 7.6E-20 141.9 12.7 155 260-418 141-308 (310)
67 3t6q_A CD180 antigen; protein- 99.6 1.7E-15 5.9E-20 156.3 12.5 181 259-443 371-559 (606)
68 1o6v_A Internalin A; bacterial 99.6 6.3E-15 2.2E-19 147.0 15.4 152 260-419 173-324 (466)
69 2xwt_C Thyrotropin receptor; s 99.6 3.5E-15 1.2E-19 135.0 12.2 164 257-423 48-223 (239)
70 4fmz_A Internalin; leucine ric 99.6 7.5E-15 2.5E-19 140.6 14.9 176 260-446 151-326 (347)
71 2v9t_B SLIT homolog 2 protein 99.6 1.4E-14 4.6E-19 129.2 15.6 129 288-417 32-165 (220)
72 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1E-14 3.5E-19 149.0 16.7 172 266-444 333-510 (562)
73 1ziw_A TOLL-like receptor 3; i 99.6 6E-15 2E-19 154.4 15.2 161 264-424 25-191 (680)
74 3e6j_A Variable lymphocyte rec 99.6 1.6E-14 5.5E-19 129.6 15.9 151 267-421 22-176 (229)
75 2z81_A CD282 antigen, TOLL-lik 99.6 2.2E-15 7.6E-20 153.5 11.5 151 264-414 26-182 (549)
76 2z80_A TOLL-like receptor 2, v 99.6 1.5E-15 5.1E-20 145.9 9.4 177 264-444 52-235 (353)
77 2z81_A CD282 antigen, TOLL-lik 99.6 2.8E-15 9.4E-20 152.9 11.8 162 257-418 43-210 (549)
78 2z7x_B TOLL-like receptor 1, v 99.6 1.1E-14 3.8E-19 147.4 15.7 158 261-421 321-485 (520)
79 3bz5_A Internalin-J, INLJ; leu 99.6 2.2E-14 7.5E-19 142.3 17.4 169 260-447 81-249 (457)
80 4ezg_A Putative uncharacterize 99.6 4.2E-15 1.4E-19 130.2 10.2 152 284-443 40-193 (197)
81 2z63_A TOLL-like receptor 4, v 99.6 6.1E-15 2.1E-19 151.0 12.6 182 261-445 344-532 (570)
82 1m9s_A Internalin B; cell inva 99.6 1.1E-14 3.7E-19 148.8 14.2 174 259-445 38-211 (605)
83 1o6v_A Internalin A; bacterial 99.6 1.7E-14 5.7E-19 143.9 15.3 171 260-443 217-387 (466)
84 3bz5_A Internalin-J, INLJ; leu 99.6 5.5E-14 1.9E-18 139.4 18.7 146 260-419 102-248 (457)
85 3j0a_A TOLL-like receptor 5; m 99.6 1.2E-14 4.2E-19 155.4 14.8 163 263-425 23-195 (844)
86 1ziw_A TOLL-like receptor 3; i 99.6 3E-14 1E-18 149.0 17.1 158 258-415 399-595 (680)
87 2ast_B S-phase kinase-associat 99.6 4.8E-16 1.7E-20 148.2 2.9 156 260-415 89-258 (336)
88 3o53_A Protein LRIM1, AGAP0063 99.6 1.6E-15 5.5E-20 143.3 6.3 179 261-444 31-227 (317)
89 2o6s_A Variable lymphocyte rec 99.6 9E-14 3.1E-18 122.8 17.2 152 267-421 10-165 (208)
90 2ell_A Acidic leucine-rich nuc 99.6 1.1E-14 3.8E-19 124.0 10.8 135 264-422 24-164 (168)
91 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.3E-14 7.8E-19 146.5 14.8 159 261-422 350-515 (562)
92 1w8a_A SLIT protein; signaling 99.6 2.8E-14 9.6E-19 124.3 13.2 130 291-421 11-143 (192)
93 1xeu_A Internalin C; cellular 99.6 1.3E-14 4.3E-19 133.1 11.3 152 259-419 36-187 (263)
94 2v70_A SLIT-2, SLIT homolog 2 99.6 4.3E-14 1.5E-18 126.0 14.4 151 290-444 13-166 (220)
95 2z63_A TOLL-like receptor 4, v 99.6 1.4E-14 4.7E-19 148.3 12.7 163 259-422 368-536 (570)
96 3j0a_A TOLL-like receptor 5; m 99.6 2.3E-14 7.8E-19 153.4 14.8 170 256-425 40-225 (844)
97 1dce_A Protein (RAB geranylger 99.6 3.2E-16 1.1E-20 159.1 0.3 172 260-436 345-565 (567)
98 3cvr_A Invasion plasmid antige 99.5 7.8E-14 2.7E-18 141.0 16.1 149 262-427 98-253 (571)
99 3e6j_A Variable lymphocyte rec 99.5 1.2E-13 4E-18 124.0 15.5 150 290-444 21-172 (229)
100 3cvr_A Invasion plasmid antige 99.5 4.2E-14 1.4E-18 143.0 14.0 155 264-442 80-241 (571)
101 2xot_A Amphoterin-induced prot 99.5 4.6E-14 1.6E-18 135.8 13.4 154 264-417 39-202 (361)
102 2wfh_A SLIT homolog 2 protein 99.5 9.2E-14 3.1E-18 121.0 14.2 127 291-418 13-140 (193)
103 2je0_A Acidic leucine-rich nuc 99.5 1.4E-14 4.8E-19 120.7 8.3 126 264-412 17-148 (149)
104 2v9t_B SLIT homolog 2 protein 99.5 1.1E-13 3.9E-18 123.2 14.7 131 264-394 32-165 (220)
105 4g8a_A TOLL-like receptor 4; l 99.5 8.7E-14 3E-18 144.1 13.3 155 264-418 52-215 (635)
106 2xot_A Amphoterin-induced prot 99.5 2.8E-13 9.4E-18 130.3 15.6 151 267-421 21-179 (361)
107 1xeu_A Internalin C; cellular 99.5 3.4E-14 1.2E-18 130.3 8.6 165 263-442 18-183 (263)
108 1jl5_A Outer protein YOPM; leu 99.5 2.8E-14 9.7E-19 141.3 8.5 156 243-416 39-207 (454)
109 2ca6_A RAN GTPase-activating p 99.5 2.2E-15 7.4E-20 146.6 -0.4 181 261-443 91-315 (386)
110 2ell_A Acidic leucine-rich nuc 99.5 6.5E-14 2.2E-18 119.2 8.9 136 310-448 24-164 (168)
111 4ay9_X Follicle-stimulating ho 99.5 2.4E-13 8.3E-18 130.2 11.7 157 264-423 30-220 (350)
112 1jl5_A Outer protein YOPM; leu 99.5 1.4E-12 4.9E-17 129.1 17.2 140 264-417 131-270 (454)
113 2ast_B S-phase kinase-associat 99.4 4.8E-14 1.6E-18 134.3 5.1 155 260-414 114-282 (336)
114 4b8c_D Glucose-repressible alc 99.4 1.4E-13 4.9E-18 144.0 8.2 143 279-424 215-361 (727)
115 2o6r_A Variable lymphocyte rec 99.4 1.5E-12 5.2E-17 111.7 13.1 130 291-421 10-141 (177)
116 4g8a_A TOLL-like receptor 4; l 99.4 1.5E-12 5.2E-17 134.7 15.2 183 260-445 393-581 (635)
117 4b8c_D Glucose-repressible alc 99.4 1.7E-13 5.9E-18 143.4 7.7 149 257-414 217-369 (727)
118 1a9n_A U2A', U2A'; complex (nu 99.4 4.5E-13 1.5E-17 114.9 8.7 130 260-416 15-152 (176)
119 3g06_A SSPH2 (leucine-rich rep 99.4 2.8E-12 9.5E-17 131.3 15.9 76 262-346 79-154 (622)
120 1w8a_A SLIT protein; signaling 99.4 1.2E-12 4.3E-17 113.8 11.5 125 267-394 11-139 (192)
121 3g06_A SSPH2 (leucine-rich rep 99.4 3.5E-12 1.2E-16 130.5 16.0 78 262-345 99-193 (622)
122 2ca6_A RAN GTPase-activating p 99.4 4.7E-14 1.6E-18 137.1 1.9 162 260-421 118-320 (386)
123 2je0_A Acidic leucine-rich nuc 99.4 2.8E-13 9.6E-18 112.8 6.4 125 311-437 18-146 (149)
124 1dce_A Protein (RAB geranylger 99.4 3.2E-12 1.1E-16 129.8 13.0 120 289-411 442-567 (567)
125 3goz_A Leucine-rich repeat-con 99.3 6.7E-14 2.3E-18 134.7 -1.3 158 261-418 47-239 (362)
126 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4.2E-16 105.2 10.9 100 315-416 14-114 (170)
127 2r9u_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 105.3 10.9 99 315-415 17-116 (174)
128 1ds9_A Outer arm dynein; leuci 99.3 4.5E-14 1.5E-18 123.7 -5.5 126 281-410 41-180 (198)
129 1a9n_A U2A', U2A'; complex (nu 99.3 5.3E-12 1.8E-16 108.2 7.2 122 313-438 22-147 (176)
130 2wfh_A SLIT homolog 2 protein 99.3 2.5E-11 8.4E-16 105.6 11.3 126 313-444 13-139 (193)
131 4ay9_X Follicle-stimulating ho 99.3 2.9E-11 1E-15 115.6 12.4 172 259-437 49-252 (350)
132 2o6r_A Variable lymphocyte rec 99.2 1E-10 3.5E-15 100.2 14.0 129 266-397 9-140 (177)
133 1z7x_W Ribonuclease inhibitor; 99.2 7.2E-13 2.5E-17 131.9 -1.0 154 264-417 199-383 (461)
134 3goz_A Leucine-rich repeat-con 99.2 3.5E-12 1.2E-16 122.7 2.5 183 261-445 19-239 (362)
135 1ds9_A Outer arm dynein; leuci 99.2 9.4E-14 3.2E-18 121.6 -8.3 149 285-437 15-180 (198)
136 2r9u_A Variable lymphocyte rec 99.2 1.9E-10 6.5E-15 98.1 12.1 109 291-401 15-125 (174)
137 1z7x_W Ribonuclease inhibitor; 99.2 1.2E-12 4.2E-17 130.1 -1.9 130 264-393 142-296 (461)
138 3g39_A Variable lymphocyte rec 99.2 1.9E-10 6.5E-15 97.7 12.0 108 290-398 11-119 (170)
139 2ifg_A High affinity nerve gro 99.0 7.1E-10 2.4E-14 105.8 10.0 100 293-394 13-116 (347)
140 3un9_A NLR family member X1; l 99.0 3.8E-11 1.3E-15 115.4 0.4 155 264-418 72-253 (372)
141 3ogk_B Coronatine-insensitive 99.0 1.3E-10 4.3E-15 119.4 2.5 153 262-414 71-253 (592)
142 3sb4_A Hypothetical leucine ri 98.9 5.7E-09 1.9E-13 98.7 11.9 101 332-437 225-327 (329)
143 3ogk_B Coronatine-insensitive 98.9 2.1E-10 7.2E-15 117.8 1.5 150 262-412 162-326 (592)
144 3sb4_A Hypothetical leucine ri 98.8 1.2E-08 4E-13 96.5 11.1 87 356-447 225-313 (329)
145 2ifg_A High affinity nerve gro 98.8 2.4E-08 8E-13 95.2 11.1 89 280-370 24-116 (347)
146 2p1m_B Transport inhibitor res 98.7 3.4E-09 1.2E-13 108.7 2.1 150 262-412 154-346 (594)
147 2ra8_A Uncharacterized protein 98.7 1.6E-08 5.5E-13 96.3 6.1 155 262-417 137-320 (362)
148 3un9_A NLR family member X1; l 98.7 2.1E-09 7.2E-14 103.2 -0.8 132 263-394 100-252 (372)
149 2p1m_B Transport inhibitor res 98.6 6.7E-09 2.3E-13 106.5 -0.3 87 329-416 428-518 (594)
150 4fdw_A Leucine rich hypothetic 98.5 2.9E-06 1E-10 82.1 15.4 168 259-438 175-352 (401)
151 4fdw_A Leucine rich hypothetic 98.3 1.4E-05 4.7E-10 77.4 15.0 169 259-438 153-330 (401)
152 1io0_A Tropomodulin; LRR prote 98.2 3.8E-07 1.3E-11 78.3 1.8 119 281-416 29-163 (185)
153 2qen_A Walker-type ATPase; unk 98.2 7.3E-06 2.5E-10 77.7 10.5 189 2-203 129-348 (350)
154 2fna_A Conserved hypothetical 98.1 9E-06 3.1E-10 77.3 9.6 189 2-202 138-355 (357)
155 1io0_A Tropomodulin; LRR prote 98.1 5.3E-07 1.8E-11 77.4 0.6 118 260-394 32-164 (185)
156 2ra8_A Uncharacterized protein 98.1 1.1E-06 3.8E-11 83.6 2.4 136 281-418 132-293 (362)
157 3e4g_A ATP synthase subunit S, 98.0 2E-06 6.7E-11 72.2 2.8 85 334-418 62-153 (176)
158 3rw6_A Nuclear RNA export fact 97.9 6E-06 2.1E-10 74.6 4.2 62 331-394 168-233 (267)
159 3rw6_A Nuclear RNA export fact 97.8 1.5E-05 5E-10 72.0 4.1 84 354-438 167-258 (267)
160 3e4g_A ATP synthase subunit S, 97.8 1.7E-05 5.7E-10 66.5 4.1 36 264-299 61-96 (176)
161 1njg_A DNA polymerase III subu 97.2 0.00076 2.6E-08 59.8 8.0 99 2-102 127-229 (250)
162 4fs7_A Uncharacterized protein 97.1 0.0047 1.6E-07 59.4 12.9 80 353-438 293-373 (394)
163 4gt6_A Cell surface protein; l 96.8 0.0088 3E-07 57.4 11.4 16 282-297 259-274 (394)
164 4fs7_A Uncharacterized protein 96.5 0.023 8E-07 54.4 12.4 162 261-436 227-393 (394)
165 4h09_A Hypothetical leucine ri 96.4 0.032 1.1E-06 53.1 12.4 146 261-413 191-342 (379)
166 1w5s_A Origin recognition comp 96.3 0.0025 8.6E-08 61.6 4.4 179 1-188 138-371 (412)
167 4h09_A Hypothetical leucine ri 96.2 0.067 2.3E-06 50.8 13.6 172 259-437 153-339 (379)
168 4gt6_A Cell surface protein; l 96.1 0.064 2.2E-06 51.3 12.8 102 310-415 265-368 (394)
169 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0056 1.9E-07 52.1 3.8 15 284-298 37-51 (197)
170 3rfe_A Platelet glycoprotein I 95.7 0.023 7.9E-07 44.9 6.6 35 382-416 32-67 (130)
171 2chg_A Replication factor C sm 95.5 0.02 7E-07 49.5 6.0 97 2-100 103-203 (226)
172 1sxj_B Activator 1 37 kDa subu 94.9 0.032 1.1E-06 51.7 6.0 95 2-98 108-206 (323)
173 2qby_B CDC6 homolog 3, cell di 94.9 0.079 2.7E-06 50.3 8.8 175 3-187 135-338 (384)
174 3rfe_A Platelet glycoprotein I 94.8 0.058 2E-06 42.6 6.3 53 292-344 12-66 (130)
175 2qby_A CDC6 homolog 1, cell di 94.7 0.071 2.4E-06 50.6 8.0 140 2-151 129-297 (386)
176 1pgv_A TMD-1, tropomodulin TMD 94.4 0.026 8.8E-07 48.0 3.4 104 311-414 42-167 (197)
177 2v1u_A Cell division control p 93.1 0.57 1.9E-05 44.2 10.9 139 1-150 130-300 (387)
178 1iqp_A RFCS; clamp loader, ext 92.1 0.33 1.1E-05 44.7 7.4 98 2-101 111-212 (327)
179 1jr3_A DNA polymerase III subu 89.3 0.75 2.6E-05 43.2 7.3 98 2-101 120-221 (373)
180 2chq_A Replication factor C sm 88.8 1.6 5.6E-05 39.7 9.0 95 2-98 103-201 (319)
181 1fnn_A CDC6P, cell division co 88.4 0.65 2.2E-05 43.9 6.2 95 2-99 126-245 (389)
182 3bos_A Putative DNA replicatio 84.7 0.63 2.1E-05 40.5 3.6 93 3-97 106-213 (242)
183 1a5t_A Delta prime, HOLB; zinc 83.9 3.6 0.00012 38.0 8.5 93 2-101 109-205 (334)
184 1hqc_A RUVB; extended AAA-ATPa 76.5 5.2 0.00018 36.4 7.0 97 3-101 92-211 (324)
185 1d2n_A N-ethylmaleimide-sensit 76.1 7.4 0.00025 34.5 7.7 87 2-95 125-231 (272)
186 1jr3_D DNA polymerase III, del 71.4 12 0.00041 34.4 8.1 96 2-99 77-183 (343)
187 2z4s_A Chromosomal replication 70.7 3.5 0.00012 39.8 4.3 90 3-95 196-300 (440)
188 1sxj_E Activator 1 40 kDa subu 68.2 9.2 0.00032 35.3 6.6 95 3-99 136-235 (354)
189 1sxj_A Activator 1 95 kDa subu 68.0 16 0.00055 35.9 8.6 90 2-96 149-247 (516)
190 1sxj_D Activator 1 41 kDa subu 65.6 13 0.00043 34.2 7.0 96 3-100 135-234 (353)
191 2qz4_A Paraplegin; AAA+, SPG7, 61.0 35 0.0012 29.5 8.8 93 2-95 99-215 (262)
192 3syl_A Protein CBBX; photosynt 54.2 19 0.00066 32.2 5.9 65 4-70 133-218 (309)
193 1l8q_A Chromosomal replication 52.6 23 0.00077 32.2 6.1 87 3-94 100-201 (324)
194 3h4m_A Proteasome-activating n 47.0 56 0.0019 28.7 7.7 62 28-93 155-222 (285)
195 3uk6_A RUVB-like 2; hexameric 46.0 39 0.0013 31.1 6.8 89 3-97 191-299 (368)
196 3u61_B DNA polymerase accessor 44.8 25 0.00084 31.9 5.0 93 2-96 106-211 (324)
197 3eie_A Vacuolar protein sortin 44.0 1.1E+02 0.0038 27.5 9.4 89 3-93 112-219 (322)
198 2qp9_X Vacuolar protein sortin 43.9 1.5E+02 0.0051 27.1 10.4 88 2-93 144-252 (355)
199 2gkw_B Tumor necrosis factor r 38.4 22 0.00074 18.2 1.9 19 22-40 3-21 (26)
200 1xwi_A SKD1 protein; VPS4B, AA 36.8 2.3E+02 0.008 25.4 10.4 91 2-94 106-215 (322)
201 1sxj_C Activator 1 40 kDa subu 35.5 1.2E+02 0.0042 27.3 8.3 93 2-97 111-208 (340)
202 3pvs_A Replication-associated 33.1 76 0.0026 30.4 6.6 96 2-98 107-212 (447)
203 2gno_A DNA polymerase III, gam 33.0 37 0.0013 30.6 4.1 67 2-69 83-152 (305)
204 2lz0_A Uncharacterized protein 30.5 57 0.0019 23.7 4.0 42 256-298 12-53 (100)
205 4aby_A DNA repair protein RECN 29.8 89 0.0031 29.2 6.5 48 4-53 318-368 (415)
206 1g5t_A COB(I)alamin adenosyltr 28.1 43 0.0015 28.0 3.3 53 4-56 123-180 (196)
207 3pfi_A Holliday junction ATP-d 27.8 60 0.002 29.4 4.7 94 3-98 108-224 (338)
208 2c9o_A RUVB-like 1; hexameric 27.1 1.4E+02 0.0049 28.4 7.4 90 4-100 298-409 (456)
209 2zan_A Vacuolar protein sortin 27.1 4E+02 0.014 25.1 10.8 91 2-94 228-337 (444)
210 1jbk_A CLPB protein; beta barr 26.4 20 0.0007 29.0 1.1 62 2-65 116-194 (195)
211 3vfd_A Spastin; ATPase, microt 25.8 3.9E+02 0.013 24.5 10.1 44 49-94 275-318 (389)
212 2lz0_A Uncharacterized protein 25.4 1.1E+02 0.0038 22.1 4.8 36 353-389 16-51 (100)
213 2kjq_A DNAA-related protein; s 22.1 70 0.0024 25.0 3.5 33 4-38 86-124 (149)
214 3d8b_A Fidgetin-like protein 1 21.7 3.1E+02 0.011 24.9 8.4 44 49-94 244-287 (357)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.97 E-value=2.5e-31 Score=270.19 Aligned_cols=201 Identities=15% Similarity=0.154 Sum_probs=159.0
Q ss_pred CeEEEEEeCCCChHhHHHHHhcCCCCCCCcEEEEEeCChhhHhhcC-cceEEEccCCChhhHHHHHHHhhcCCCCCCchH
Q 012324 1 MKVLIVFDDVTCFSQLESIIRSLDWLTPVSRIIITTRNKQVLRNWG-VRKIYEIEALENHHALELFSRHAFKRNHPDVGY 79 (466)
Q Consensus 1 kr~LlvlDd~~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 79 (466)
|||||||||||+.+++ .+. . .+||+||||||++.++..++ ..++|+|++|+++|||+||.+.+|.... .+..
T Consensus 243 kr~LlVLDdv~~~~~~-~~~-~----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~ 315 (549)
T 2a5y_B 243 PNTLFVFDDVVQEETI-RWA-Q----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKE 315 (549)
T ss_dssp TTEEEEEEEECCHHHH-HHH-H----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHH
T ss_pred CcEEEEEECCCCchhh-ccc-c----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhH
Confidence 4999999999998865 221 1 27999999999999998876 4468999999999999999999986543 4677
Q ss_pred HHHHHHHHHHhCCCceeehhhhhhcccCCHHHHHHHHH-HHHhccchhHHHHHHHHHhcCchhhhhhhc-----------
Q 012324 80 EKLSSKVMKYAQGVPLALKVLGCFLYEREKEVSESAIN-KLQRILHPSILEVLKISYDSLDNKEKNIFL----------- 147 (466)
Q Consensus 80 ~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~-~l~~~~~~~~~~~l~~sy~~L~~~~~~~~~----------- 147 (466)
.+++++|+++|+|+|||++++|+.++.+. ++|...+. .++......+..++.+||+.||++.+.||+
T Consensus 316 ~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~ 394 (549)
T 2a5y_B 316 EDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALA 394 (549)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhh
Confidence 88999999999999999999999998774 23322222 233323455777788889988888888888
Q ss_pred eeeccCCCccHHHHHHHHHhc--CCCccc-----------hhhhhhcccceEEcC---CCeEEecHHHHHHHHHHHhhhc
Q 012324 148 DVACFFQGEDVNLVMKFLNAS--GFYPEI-----------GISVLVDKSLIAIGS---YNKIRMHDLLQELGREIVRQES 211 (466)
Q Consensus 148 ~~~~fp~~~~~~~l~~~~~~~--~~~~~~-----------~~~~L~~~sl~~~~~---~~~~~~hdlv~~~~~~~~~~~~ 211 (466)
|||+||+++.++ ++.|+++ ||+... ++++|++++|++... ...|+|||++|++|+.++..++
T Consensus 395 ~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 395 FAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp GGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred heeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999999998888 8899999 776432 599999999998753 3579999999999998776554
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=1.7e-26 Score=257.98 Aligned_cols=199 Identities=21% Similarity=0.278 Sum_probs=168.1
Q ss_pred CeEEEEEeCCCChHhHHHHHhcCCCCCCCcEEEEEeCChhhHhh-cCcceEEEccC-CChhhHHHHHHHhhcCCCCCCch
Q 012324 1 MKVLIVFDDVTCFSQLESIIRSLDWLTPVSRIIITTRNKQVLRN-WGVRKIYEIEA-LENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 1 kr~LlvlDd~~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~-~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
|||||||||||+.++|..+ .+||+||||||++.++.. ++..+.+.+++ |+++||++||...++... +.
T Consensus 236 ~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~ 305 (1249)
T 3sfz_A 236 PRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---ED 305 (1249)
T ss_dssp CSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TT
T ss_pred CCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hh
Confidence 4899999999998876653 578999999999999855 45567899996 999999999999884432 33
Q ss_pred HHHHHHHHHHHhCCCceeehhhhhhcccCCHHHHHHHHHHHHhcc-----------chhHHHHHHHHHhcCchhhhhhhc
Q 012324 79 YEKLSSKVMKYAQGVPLALKVLGCFLYEREKEVSESAINKLQRIL-----------HPSILEVLKISYDSLDNKEKNIFL 147 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~-----------~~~~~~~l~~sy~~L~~~~~~~~~ 147 (466)
..+.+++|+++|+|+||||+++|++|+.+. ..|+.+++.+.... ...+..++.+||+.|+++.|.||+
T Consensus 306 ~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~ 384 (1249)
T 3sfz_A 306 LPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYT 384 (1249)
T ss_dssp CCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred CcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHH
Confidence 456799999999999999999999998776 46999999886553 145899999999999999999999
Q ss_pred eeeccCCCccH--HHHHHHHHhcCCCccchhhhhhcccceEEcCCC---eEEecHHHHHHHHHHHhhh
Q 012324 148 DVACFFQGEDV--NLVMKFLNASGFYPEIGISVLVDKSLIAIGSYN---KIRMHDLLQELGREIVRQE 210 (466)
Q Consensus 148 ~~~~fp~~~~~--~~l~~~~~~~~~~~~~~~~~L~~~sl~~~~~~~---~~~~hdlv~~~~~~~~~~~ 210 (466)
||++||+++.+ ..+++.|.+++......++.|++++|++....+ .|+||+++|++++..+.++
T Consensus 385 ~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 385 DLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999998655 459999988776677889999999999976544 4999999999999886655
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.91 E-value=3.5e-25 Score=229.49 Aligned_cols=180 Identities=16% Similarity=0.152 Sum_probs=146.7
Q ss_pred CeEEEEEeCCCChHhHHHHHhcCCCCCCCcEEEEEeCChhhHhhcCcceEEEcc------CCChhhHHHHHHHhhcCCCC
Q 012324 1 MKVLIVFDDVTCFSQLESIIRSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEIE------ALENHHALELFSRHAFKRNH 74 (466)
Q Consensus 1 kr~LlvlDd~~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~ 74 (466)
||+||||||||+.++|+.+. .||+||||||++.++..+.....|+++ +|+.+|||+||.+.. +..
T Consensus 244 KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~- 314 (1221)
T 1vt4_I 244 ENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR- 314 (1221)
T ss_dssp SSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-
T ss_pred CCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-
Confidence 68999999999999898753 689999999999998755444456666 899999999999984 322
Q ss_pred CCchHHHHHHHHHHHhCCCceeehhhhhhcccC--CHHHHHHHHHHHHhccchhHHHHHHHHHhcCchhh-hhhhceeec
Q 012324 75 PDVGYEKLSSKVMKYAQGVPLALKVLGCFLYER--EKEVSESAINKLQRILHPSILEVLKISYDSLDNKE-KNIFLDVAC 151 (466)
Q Consensus 75 ~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~--~~~~w~~~~~~l~~~~~~~~~~~l~~sy~~L~~~~-~~~~~~~~~ 151 (466)
. .+++.++ |+|+||||+++|+.|+.+ ....|+.. ....+..++.+||+.||++. |.||++||+
T Consensus 315 -~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAI 380 (1221)
T 1vt4_I 315 -P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380 (1221)
T ss_dssp -T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTS
T ss_pred -H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 1 2233343 999999999999999976 67778653 35679999999999999999 999999999
Q ss_pred cCCCccH--HHHHHHHHhcCC-CccchhhhhhcccceEEcC-CCeEEecHHHHHHH
Q 012324 152 FFQGEDV--NLVMKFLNASGF-YPEIGISVLVDKSLIAIGS-YNKIRMHDLLQELG 203 (466)
Q Consensus 152 fp~~~~~--~~l~~~~~~~~~-~~~~~~~~L~~~sl~~~~~-~~~~~~hdlv~~~~ 203 (466)
||+++.+ ..++..|+++|. .....+++|+++||++... ...|+|||++++++
T Consensus 381 FPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9998665 458999998863 2456799999999998753 56899999998865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.88 E-value=4.7e-23 Score=212.18 Aligned_cols=195 Identities=21% Similarity=0.268 Sum_probs=156.0
Q ss_pred CeEEEEEeCCCChHhHHHHHhcCCCCCCCcEEEEEeCChhhHhhcCcceEEEc---cCCChhhHHHHHHHhhcCCCCCCc
Q 012324 1 MKVLIVFDDVTCFSQLESIIRSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEI---EALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 1 kr~LlvlDd~~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+++||||||+|+..++..+ ..|++||||||+..++..+. ...+++ ++|+.+||++||...++... .
T Consensus 236 ~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~---~ 304 (591)
T 1z6t_A 236 PRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK---A 304 (591)
T ss_dssp TTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG---G
T ss_pred CCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc---c
Confidence 4799999999997765532 56899999999999887654 234444 58999999999999886422 2
Q ss_pred hHHHHHHHHHHHhCCCceeehhhhhhcccCCHHHHHHHHHHHHhcc-----------chhHHHHHHHHHhcCchhhhhhh
Q 012324 78 GYEKLSSKVMKYAQGVPLALKVLGCFLYEREKEVSESAINKLQRIL-----------HPSILEVLKISYDSLDNKEKNIF 146 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~-----------~~~~~~~l~~sy~~L~~~~~~~~ 146 (466)
...+.+.+|+++|+|+|+|+..+|+.++.+. ..|..+.+.+.... ...+..++..||+.||++.|.||
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l 383 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYY 383 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHH
Confidence 2345788999999999999999999998764 36888888876542 24788999999999999999999
Q ss_pred ceeeccCCCccH--HHHHHHHHhcCCCccchhhhhhcccceEEcC---CCeEEecHHHHHHHHHHH
Q 012324 147 LDVACFFQGEDV--NLVMKFLNASGFYPEIGISVLVDKSLIAIGS---YNKIRMHDLLQELGREIV 207 (466)
Q Consensus 147 ~~~~~fp~~~~~--~~l~~~~~~~~~~~~~~~~~L~~~sl~~~~~---~~~~~~hdlv~~~~~~~~ 207 (466)
+++|+||.++.+ ..+...|..+.......+..|++++++.... ...|+||+++|+++....
T Consensus 384 ~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 384 TDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 999999987554 5588888765444566799999999998543 237999999999998773
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.7e-21 Score=183.81 Aligned_cols=176 Identities=27% Similarity=0.339 Sum_probs=158.4
Q ss_pred CCCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC-----------CCcccEEeecCccCcc
Q 012324 256 NPMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-----------SGNVCWLFLRGTAIEE 324 (466)
Q Consensus 256 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----------~~~l~~L~l~~~~i~~ 324 (466)
.|..+..+++|++|++++|.+. .+|..+.++++|++|++++|...+.+|..+ ..+|++|++++|.++.
T Consensus 119 lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 197 (328)
T 4fcg_A 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197 (328)
T ss_dssp CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC
T ss_pred hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc
Confidence 3456889999999999999766 889999999999999999999999999765 5688999999999999
Q ss_pred cChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc-ccchhhhcc
Q 012324 325 LPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE-RIPESIIQL 403 (466)
Q Consensus 325 lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l 403 (466)
+|..++.+++|++|++++|.+. .+|+.++.+++|++|++++|+..+.+|..++.+++|+.|++++|++. .+|..+.++
T Consensus 198 lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 276 (328)
T 4fcg_A 198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276 (328)
T ss_dssp CCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred chHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence 9999999999999999998855 57778999999999999999999999999999999999999998777 889999999
Q ss_pred CCCcEeecccCcCCCcCCCCeEeccCCCCc
Q 012324 404 FVLRYLLLSYSERFQSLPKPLFLARGCLAL 433 (466)
Q Consensus 404 ~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L 433 (466)
++|++|++++|++.+.+|..+..+.++..+
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred CCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 999999999999999999887655544333
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=9.4e-21 Score=178.98 Aligned_cols=165 Identities=19% Similarity=0.212 Sum_probs=97.1
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCc-ccChhhhccC-C
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIE-ELPSSIDRLR-R 334 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~-~lp~~l~~l~-~ 334 (466)
.+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+. .++++|++++|.++ .+|..++.++ +
T Consensus 96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~ 175 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175 (313)
T ss_dssp GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhc
Confidence 455666666666666655556666666666666666666665555554332 35566666666665 5566666665 6
Q ss_pred CCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccC
Q 012324 335 LGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYS 414 (466)
Q Consensus 335 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~ 414 (466)
|++|++++|.+.+..|..+..++ |++|++++|.+.+..|..+..+++|+.|++++|.++..+..+..+++|++|++++|
T Consensus 176 L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254 (313)
T ss_dssp CCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS
T ss_pred CcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC
Confidence 66666666665555555555554 66666666555555555566666666666666666543334555566666666666
Q ss_pred cCCCcCCCCe
Q 012324 415 ERFQSLPKPL 424 (466)
Q Consensus 415 ~~~~~~p~~~ 424 (466)
.+.+.+|..+
T Consensus 255 ~l~~~~p~~l 264 (313)
T 1ogq_A 255 RIYGTLPQGL 264 (313)
T ss_dssp CCEECCCGGG
T ss_pred cccCcCChHH
Confidence 6555555544
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=4.8e-19 Score=168.30 Aligned_cols=175 Identities=23% Similarity=0.240 Sum_probs=138.1
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCcc-CcccChhhhc--
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTA-IEELPSSIDR-- 331 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~-i~~lp~~l~~-- 331 (466)
+..+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+. .+|++|++++|+ +..+|..++.
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 445777889999999888766 88888889999999999998876 6665443 577999998854 4477776654
Q ss_pred -------cCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc-ccchhhhcc
Q 012324 332 -------LRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE-RIPESIIQL 403 (466)
Q Consensus 332 -------l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l 403 (466)
+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|++. .+|..++++
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 889999999988754 78888889999999999987776 46777888999999999988777 778888899
Q ss_pred CCCcEeecccCcCCCcCCCCeEeccCCCCcccccc
Q 012324 404 FVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLG 438 (466)
Q Consensus 404 ~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~ 438 (466)
++|++|++++|.+.+.+|..+. ++++|+.+..
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~---~l~~L~~L~L 284 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIH---RLTQLEKLDL 284 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGG---GCTTCCEEEC
T ss_pred CCCCEEECCCCCchhhcchhhh---cCCCCCEEeC
Confidence 9999999999988888887654 3344444433
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=2.6e-19 Score=189.65 Aligned_cols=93 Identities=22% Similarity=0.268 Sum_probs=53.5
Q ss_pred CCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCc-ccChhhhccCC
Q 012324 258 MLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIE-ELPSSIDRLRR 334 (466)
Q Consensus 258 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~-~lp~~l~~l~~ 334 (466)
..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+. .++++|++++|.+. .+|..++.+++
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 3455566666666666666666666666666666666666666655554332 35566666666555 45555555555
Q ss_pred CCeeeccccccccccc
Q 012324 335 LGYLNLSDCKRLKSLP 350 (466)
Q Consensus 335 L~~L~l~~~~~~~~~p 350 (466)
|++|++++|.+.+.+|
T Consensus 540 L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCEEECCSSEEESBCC
T ss_pred CCEEECCCCccCCcCC
Confidence 5555555554443333
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.79 E-value=3.6e-19 Score=188.59 Aligned_cols=167 Identities=24% Similarity=0.334 Sum_probs=114.6
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCc-ccChhh----
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIE-ELPSSI---- 329 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~-~lp~~l---- 329 (466)
+..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+. ..++.|++++|.+. .+|..+
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 34566677777777777776667777777777777777777777666665443 45677777776665 444332
Q ss_pred ------------------------------------------------------------------hccCCCCeeecccc
Q 012324 330 ------------------------------------------------------------------DRLRRLGYLNLSDC 343 (466)
Q Consensus 330 ------------------------------------------------------------------~~l~~L~~L~l~~~ 343 (466)
+.+++|++|++++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 22455667777777
Q ss_pred ccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc-ccchhhhccCCCcEeecccCcCCCcCCC
Q 012324 344 KRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE-RIPESIIQLFVLRYLLLSYSERFQSLPK 422 (466)
Q Consensus 344 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~ 422 (466)
.+.+.+|..++++++|+.|++++|.+.+.+|..++++++|+.|++++|+++ .+|..+.++++|++|++++|++.|.+|.
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 777777777777777777777777777777777777777777777777777 6677777777777777777777777775
Q ss_pred C
Q 012324 423 P 423 (466)
Q Consensus 423 ~ 423 (466)
.
T Consensus 723 ~ 723 (768)
T 3rgz_A 723 M 723 (768)
T ss_dssp S
T ss_pred c
Confidence 3
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=4.6e-19 Score=167.38 Aligned_cols=180 Identities=17% Similarity=0.220 Sum_probs=159.2
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC---CcccEEeecCccCc-ccChhhhcc
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS---GNVCWLFLRGTAIE-ELPSSIDRL 332 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~l~~~~i~-~lp~~l~~l 332 (466)
+..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+. ..+++|++++|.+. .+|..+..+
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 44688999999999999988889999999999999999999998888886554 27899999999999 788899998
Q ss_pred CCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc-ccchhhhccCCCcEeec
Q 012324 333 RRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE-RIPESIIQLFVLRYLLL 411 (466)
Q Consensus 333 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l 411 (466)
+ |++|++++|.+.+..|..+..+++|+.|++++|.+.+..|. +..+++|+.|++++|.++ .+|..+..+++|++|++
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 7 99999999998888899999999999999999988877765 888999999999999999 88999999999999999
Q ss_pred ccCcCCCcCCCCeEeccCCCCccccccCccc
Q 012324 412 SYSERFQSLPKPLFLARGCLALEPFLGIIED 442 (466)
Q Consensus 412 ~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~ 442 (466)
++|.+.+.+|.. ..+++|+.+....+.
T Consensus 276 s~N~l~~~ip~~----~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 276 SFNNLCGEIPQG----GNLQRFDVSAYANNK 302 (313)
T ss_dssp CSSEEEEECCCS----TTGGGSCGGGTCSSS
T ss_pred cCCcccccCCCC----ccccccChHHhcCCC
Confidence 999999999975 456666666555443
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=2.2e-17 Score=153.94 Aligned_cols=177 Identities=21% Similarity=0.131 Sum_probs=147.1
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeecccc
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDC 343 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~ 343 (466)
++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+......+++|++++|.+..+|..+..+++|++|++++|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC
Confidence 68999999999887777888999999999999999877655555567889999999999999998999999999999998
Q ss_pred ccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchh-hhccCCCcEeecccCcCCCcCCC
Q 012324 344 KRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPES-IIQLFVLRYLLLSYSERFQSLPK 422 (466)
Q Consensus 344 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~ 422 (466)
.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.++.+|.. +.++++|++|++++|.+. .+|.
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~ 189 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh
Confidence 86655557789999999999999888776666788999999999999999988874 578999999999998854 7887
Q ss_pred CeEeccCCCCccccccCccccC
Q 012324 423 PLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 423 ~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
.++.. ..|+.+....+.+.
T Consensus 190 ~~~~~---~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 190 GFFGS---HLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTT---CCCSEEECCSCCBC
T ss_pred hhccc---ccCCeEEeCCCCcc
Confidence 76543 35555555555553
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=2.1e-17 Score=153.92 Aligned_cols=184 Identities=24% Similarity=0.193 Sum_probs=132.3
Q ss_pred CCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCcc-CCCCC--CcccEEeecCccCccc-ChhhhccC
Q 012324 258 MLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL-PEISS--GNVCWLFLRGTAIEEL-PSSIDRLR 333 (466)
Q Consensus 258 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~--~~l~~L~l~~~~i~~l-p~~l~~l~ 333 (466)
..+..+++|++|++++|.+.+..|..+..+++|++|++++|.....+ |..+. .++++|++++|.+..+ |..+..++
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence 45777888888888888766666777888888888888888744444 43333 4678888888888866 44577888
Q ss_pred CCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcccc-chhhhccCCCcEeecc
Q 012324 334 RLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERI-PESIIQLFVLRYLLLS 412 (466)
Q Consensus 334 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~ 412 (466)
+|++|++++|.+.+..+..++.+++|++|++++|.+....+..+..+++|+.|++++|.++.+ |..+.++++|+.|+++
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 888888888776554445577888888888888776655555678888888888888888854 6678888888888888
Q ss_pred cCcCCCcCCCCeEeccCCCCccccccCccccC
Q 012324 413 YSERFQSLPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 413 ~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
+|.+.+ +|.. .+.++++|+.+....+.+.
T Consensus 210 ~n~l~~-~~~~--~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 210 ANNLSA-LPTE--ALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp SSCCSC-CCHH--HHTTCTTCCEEECCSSCEE
T ss_pred CCcCCc-CCHH--HcccCcccCEEeccCCCcc
Confidence 887554 3332 1345666666666555543
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=4.3e-17 Score=151.74 Aligned_cols=179 Identities=18% Similarity=0.120 Sum_probs=150.2
Q ss_pred CCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCcc-Cccc-ChhhhccCCCCee
Q 012324 263 LNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTA-IEEL-PSSIDRLRRLGYL 338 (466)
Q Consensus 263 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~-i~~l-p~~l~~l~~L~~L 338 (466)
.++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+. .++++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 47999999999987776667899999999999999988776665544 578999999997 8877 6678999999999
Q ss_pred eccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecccCcCC
Q 012324 339 NLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSYSERF 417 (466)
Q Consensus 339 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~ 417 (466)
++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.++.+|. .+.++++|++|++++|.+.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 999998777777889999999999999998887767779999999999999999998876 5889999999999999987
Q ss_pred CcCCCCeEeccCCCCccccccCccccC
Q 012324 418 QSLPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 418 ~~~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
+..|..+. ++++|+.+....+.+.
T Consensus 191 ~~~~~~~~---~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 191 HVHPHAFR---DLGRLMTLYLFANNLS 214 (285)
T ss_dssp EECTTTTT---TCTTCCEEECCSSCCS
T ss_pred ccCHhHcc---CcccccEeeCCCCcCC
Confidence 77676654 4556665555444443
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=9.1e-17 Score=148.43 Aligned_cols=163 Identities=23% Similarity=0.225 Sum_probs=133.6
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCccCcccChh-hhccC
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGTAIEELPSS-IDRLR 333 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~~i~~lp~~-l~~l~ 333 (466)
...+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+ ..++++|++++|.++.+|.. ++.++
T Consensus 56 ~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 56 VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133 (272)
T ss_dssp CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence 3457888999999999997655 3 368899999999999998776555433 36789999999999987765 68899
Q ss_pred CCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecc
Q 012324 334 RLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLS 412 (466)
Q Consensus 334 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~ 412 (466)
+|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..++.+++|+.|++++|.++.++. .+..+++|++|+++
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 99999999987665555557889999999999988887767778899999999999999997765 47889999999999
Q ss_pred cCcCCCcCC
Q 012324 413 YSERFQSLP 421 (466)
Q Consensus 413 ~~~~~~~~p 421 (466)
+|++.+..|
T Consensus 214 ~N~~~~~~~ 222 (272)
T 3rfs_A 214 DNPWDCTCP 222 (272)
T ss_dssp SSCBCCCTT
T ss_pred CCCccccCc
Confidence 998776555
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=4.2e-18 Score=176.37 Aligned_cols=161 Identities=20% Similarity=0.275 Sum_probs=81.6
Q ss_pred CCCCCCCCcEEEcCCCCCCcc-----------------cCcccc--cCcccCEEecCCCCCCCccCCCCC--CcccEEee
Q 012324 259 LMPRLNNLVILNLRSGKSLKS-----------------LPSGIF--NLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFL 317 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l 317 (466)
.++++++|++|++++|.+.+. +|..++ ++++|++|++++|.+.+.+|..+. .+|++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 345555555555555544443 555555 555555555555555555554333 34455555
Q ss_pred cCcc-Cc--ccChhhhcc------CCCCeeecccccccccccc--ccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEE
Q 012324 318 RGTA-IE--ELPSSIDRL------RRLGYLNLSDCKRLKSLPS--SLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIIL 386 (466)
Q Consensus 318 ~~~~-i~--~lp~~l~~l------~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 386 (466)
++|+ ++ .+|..++.+ ++|++|++++|.+. .+|. .++++++|++|++++|.+.+.+| .++.+++|+.|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 5554 44 245545444 55555555555433 4554 45555555555555555444555 44445555555
Q ss_pred EccCCCccccchhhhccCC-CcEeecccCcCCCcCCC
Q 012324 387 NLAKTNIERIPESIIQLFV-LRYLLLSYSERFQSLPK 422 (466)
Q Consensus 387 ~l~~~~l~~lp~~l~~l~~-L~~L~l~~~~~~~~~p~ 422 (466)
++++|.++.+|..+.++++ |++|++++|.+. .+|.
T Consensus 359 ~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp ECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred ECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 5555555555544555554 555555544433 4443
No 16
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=2.5e-16 Score=145.32 Aligned_cols=178 Identities=20% Similarity=0.145 Sum_probs=120.6
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCccCcccChh-hhccCCCCeeec
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGTAIEELPSS-IDRLRRLGYLNL 340 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~~i~~lp~~-l~~l~~L~~L~l 340 (466)
++++.|++++|.+....+..+.++++|++|++++|.+....+..+ ..++++|++++|.+..+|.. +..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 567888888776655555567778888888888776554333322 34678888888887777653 567778888888
Q ss_pred cccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecccCcCCCc
Q 012324 341 SDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSYSERFQS 419 (466)
Q Consensus 341 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~ 419 (466)
++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++.+|. .+.++++|++|++++|.+. .
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 195 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-R 195 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-C
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-c
Confidence 8777655555556777888888888776665555557777888888888888776665 4677788888888877654 3
Q ss_pred CCCCeEeccCCCCccccccCccccC
Q 012324 420 LPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 420 ~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
+|... +..+++|+.+....+.+.
T Consensus 196 ~~~~~--~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 196 VPEGA--FDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTT--TTTCTTCCEEECCSSCBC
T ss_pred CCHHH--hccccCCCEEEecCCCee
Confidence 44432 235566666666555543
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=1.1e-16 Score=152.31 Aligned_cols=178 Identities=21% Similarity=0.146 Sum_probs=121.7
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChh-hhccCCC
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSS-IDRLRRL 335 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~-l~~l~~L 335 (466)
+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+. .+|.....++++|++++|.+..+|.. +..+++|
T Consensus 71 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccC
Confidence 346888999999999999877777888999999999999998765 56666667889999999888877764 7788888
Q ss_pred Ceeecccccccc--ccccccCCC--------------------CCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCc
Q 012324 336 GYLNLSDCKRLK--SLPSSLCKL--------------------KSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNI 393 (466)
Q Consensus 336 ~~L~l~~~~~~~--~~p~~~~~l--------------------~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l 393 (466)
++|++++|.+.. ..|..+..+ ++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred CEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 888888876532 333333322 3455555555555555555666677777777777777
Q ss_pred cccch-hhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccC
Q 012324 394 ERIPE-SIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGI 439 (466)
Q Consensus 394 ~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~ 439 (466)
+.++. .+..+++|++|++++|.+. .+|..+. ++++|+.+...
T Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~---~l~~L~~L~l~ 272 (332)
T 2ft3_A 230 RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP---DLKLLQVVYLH 272 (332)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG---GCTTCCEEECC
T ss_pred CcCChhHhhCCCCCCEEECCCCcCe-ecChhhh---cCccCCEEECC
Confidence 65543 5666777777777766543 5665533 34444444433
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=2.3e-16 Score=143.94 Aligned_cols=156 Identities=19% Similarity=0.116 Sum_probs=135.3
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccCh-hhhccCCCCeeec
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPS-SIDRLRRLGYLNL 340 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~-~l~~l~~L~~L~l 340 (466)
++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+. .+|++|++++|.++.+|. .+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 6899999999988888888899999999999999998876665433 688999999999998875 4689999999999
Q ss_pred cccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecccCcCCCc
Q 012324 341 SDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSYSERFQS 419 (466)
Q Consensus 341 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~ 419 (466)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|. .+.++++|++|++++|++...
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9998665444557899999999999988876666689999999999999999997776 788999999999999997665
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=3.7e-16 Score=148.63 Aligned_cols=185 Identities=21% Similarity=0.137 Sum_probs=127.0
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccCh-hhhccCCC
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPS-SIDRLRRL 335 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~-~l~~l~~L 335 (466)
+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+. .+|.....++++|++++|.+..++. .+.++++|
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 69 DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 147 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccc
Confidence 345788999999999999877777888999999999999998755 5666666778888888888876665 35667777
Q ss_pred Ceeecccccccc--ccccccCCCCC---------------------CCEEEecCCCCCCCCCcccCCCCCCcEEEccCCC
Q 012324 336 GYLNLSDCKRLK--SLPSSLCKLKS---------------------LKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTN 392 (466)
Q Consensus 336 ~~L~l~~~~~~~--~~p~~~~~l~~---------------------L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 392 (466)
++|++++|.+.. ..+..+..+++ |++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 777777665432 33344444444 4444555544444456667777888888888888
Q ss_pred ccccch-hhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccCCC
Q 012324 393 IERIPE-SIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQRI 446 (466)
Q Consensus 393 l~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~~~ 446 (466)
++.++. .+..+++|++|++++|.+. .+|..+ ..+++|+.+....+.+..+
T Consensus 228 l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l---~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL---ADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT---TTCSSCCEEECCSSCCCCC
T ss_pred CceeChhhccCCCCCCEEECCCCcCc-cCChhh---ccCCCcCEEECCCCcCCcc
Confidence 875544 6777888888888877644 666654 3455555555544444433
No 20
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=8.1e-18 Score=158.78 Aligned_cols=160 Identities=21% Similarity=0.149 Sum_probs=74.9
Q ss_pred CCCCcEEEcCCCCCCcccCccc--ccCcccCEEecCCCCCCCccCCCC-------CCcccEEeecCccCcccC-hhhhcc
Q 012324 263 LNNLVILNLRSGKSLKSLPSGI--FNLEFLTKLDLSGCSKLKRLPEIS-------SGNVCWLFLRGTAIEELP-SSIDRL 332 (466)
Q Consensus 263 l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~-------~~~l~~L~l~~~~i~~lp-~~l~~l 332 (466)
+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+. |..+ ..++++|++++|.+..++ ..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4455555555555544555443 4555555555555554443 3211 134555555555555443 345555
Q ss_pred CCCCeeeccccccccc--ccccc--CCCCCCCEEEecCCCCCC--CCC-cccCCCCCCcEEEccCCCccccc--hhhhcc
Q 012324 333 RRLGYLNLSDCKRLKS--LPSSL--CKLKSLKVLNLCGCSNLQ--RLP-ECLGQLSSPIILNLAKTNIERIP--ESIIQL 403 (466)
Q Consensus 333 ~~L~~L~l~~~~~~~~--~p~~~--~~l~~L~~L~l~~~~~~~--~~p-~~l~~l~~L~~L~l~~~~l~~lp--~~l~~l 403 (466)
++|++|++++|.+.+. .|..+ +.+++|++|++++|.+.+ .++ ..+..+++|+.|++++|.++..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 5555555555544333 22222 455555555555544431 111 12234455555555555555322 233344
Q ss_pred CCCcEeecccCcCCCcCCCCe
Q 012324 404 FVLRYLLLSYSERFQSLPKPL 424 (466)
Q Consensus 404 ~~L~~L~l~~~~~~~~~p~~~ 424 (466)
++|++|++++|.+. .+|..+
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSC
T ss_pred CCCCEEECCCCccC-hhhhhc
Confidence 55555555555433 444433
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=5.5e-18 Score=175.51 Aligned_cols=168 Identities=17% Similarity=0.186 Sum_probs=139.8
Q ss_pred CCCCCC--CCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCC-CCC-ccCCCCC--------CcccEEeecCccCc
Q 012324 256 NPMLMP--RLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCS-KLK-RLPEISS--------GNVCWLFLRGTAIE 323 (466)
Q Consensus 256 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~--------~~l~~L~l~~~~i~ 323 (466)
.|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. +.+ .+|..+. .++++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 345677 89999999999998899999999999999999999998 776 6775432 57899999999999
Q ss_pred ccCh--hhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCC-CcEEEccCCCccccchhh
Q 012324 324 ELPS--SIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSS-PIILNLAKTNIERIPESI 400 (466)
Q Consensus 324 ~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~l~~lp~~l 400 (466)
.+|. .++.+++|++|++++|.+.+.+| .++.+++|++|++++|.+. .+|..+..+++ |+.|++++|.++.+|..+
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~ 396 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIF 396 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhh
Confidence 9998 89999999999999988877888 7888888999999887666 78888888888 888998888888888877
Q ss_pred hccC--CCcEeecccCcCCCcCCCCeE
Q 012324 401 IQLF--VLRYLLLSYSERFQSLPKPLF 425 (466)
Q Consensus 401 ~~l~--~L~~L~l~~~~~~~~~p~~~~ 425 (466)
..++ +|++|++++|.+.+.+|..+.
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred hhcccCccCEEECcCCcCCCcchhhhc
Confidence 6644 788888888887777665443
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=2.1e-17 Score=174.83 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=144.8
Q ss_pred CCCCCC--CCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCC-CCC-ccCCCCC---------CcccEEeecCccC
Q 012324 256 NPMLMP--RLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCS-KLK-RLPEISS---------GNVCWLFLRGTAI 322 (466)
Q Consensus 256 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~---------~~l~~L~l~~~~i 322 (466)
.|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. +.+ .+|..+. .+|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 455666 99999999999999999999999999999999999998 776 6775322 3789999999999
Q ss_pred cccCh--hhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCC-CcEEEccCCCccccchh
Q 012324 323 EELPS--SIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSS-PIILNLAKTNIERIPES 399 (466)
Q Consensus 323 ~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~l~~lp~~ 399 (466)
+.+|. .++++++|++|++++|.+. .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++.+|..
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~ 637 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchh
Confidence 99999 8999999999999999866 888 7999999999999998877 89999999999 99999999999999988
Q ss_pred hhccCC--CcEeecccCcCCCcCCC
Q 012324 400 IIQLFV--LRYLLLSYSERFQSLPK 422 (466)
Q Consensus 400 l~~l~~--L~~L~l~~~~~~~~~p~ 422 (466)
+..++. |+.|++++|.+.+.+|.
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred hhccccCCCCEEECcCCcCCCcccc
Confidence 777654 99999999988776653
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=3.8e-17 Score=162.65 Aligned_cols=131 Identities=19% Similarity=0.102 Sum_probs=86.1
Q ss_pred cccEEeecCccCccc-ChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEcc
Q 012324 311 NVCWLFLRGTAIEEL-PSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLA 389 (466)
Q Consensus 311 ~l~~L~l~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 389 (466)
.++.|++++|.+..+ |..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 345555555555533 4456677777777777777666666667777777777777776666666677777777777777
Q ss_pred CCCcccc-chhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccC
Q 012324 390 KTNIERI-PESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 390 ~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
+|.++.+ |..+.++++|++|++++|.+.+ +|... +.++++|+.+....+.+.
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~--~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGI--FDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTT--TTTCTTCCEEECCSSCBC
T ss_pred CCcccccChhhccccccccEEECCCCcccc-CCHhH--hccCCcccEEEccCCCcc
Confidence 7777744 5567777777777777776543 44432 245666776666666554
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=5.1e-16 Score=143.24 Aligned_cols=164 Identities=23% Similarity=0.183 Sum_probs=137.5
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCccCcccCh-hhhccC
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGTAIEELPS-SIDRLR 333 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~~i~~lp~-~l~~l~ 333 (466)
+..+.++++|++|++++|.+....+..+.++++|++|++++|.+....+..+ ..+|++|++++|.++.+|. .+..++
T Consensus 54 ~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 133 (270)
T 2o6q_A 54 SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133 (270)
T ss_dssp TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc
Confidence 4468899999999999997665545556889999999999998776554433 3578999999999998876 478999
Q ss_pred CCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecc
Q 012324 334 RLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLS 412 (466)
Q Consensus 334 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~ 412 (466)
+|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++.+|. .+..+++|+.|+++
T Consensus 134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 99999999998655444558899999999999988877767779999999999999999998876 47889999999999
Q ss_pred cCcCCCcC
Q 012324 413 YSERFQSL 420 (466)
Q Consensus 413 ~~~~~~~~ 420 (466)
+|++...-
T Consensus 214 ~N~~~c~c 221 (270)
T 2o6q_A 214 ENPWDCTC 221 (270)
T ss_dssp SSCBCCSS
T ss_pred CCCeeCCC
Confidence 99875543
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=5.3e-16 Score=143.27 Aligned_cols=181 Identities=20% Similarity=0.163 Sum_probs=146.6
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChh-hhccCCCCe
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSS-IDRLRRLGY 337 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~-l~~l~~L~~ 337 (466)
....+++|+.|++.+|.+. .++ .+..+++|++|++++|.+.+...-....++++|++++|.++.++.. ++.+++|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 4567899999999998544 444 4889999999999999877632233446889999999999988765 689999999
Q ss_pred eeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecccCcC
Q 012324 338 LNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSYSER 416 (466)
Q Consensus 338 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~ 416 (466)
|++++|.+.+..+..++.+++|++|++++|.+.+..|..++.+++|+.|++++|+++.+|. .++.+++|++|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 9999998776666668999999999999998887767778999999999999999997766 468899999999999997
Q ss_pred CCcCCCCeEeccCCCCccccccCccccC
Q 012324 417 FQSLPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 417 ~~~~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
.+..|..+ .++++|+.+....+.+.
T Consensus 194 ~~~~~~~~---~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 194 KSVPDGVF---DRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SCCCTTTT---TTCTTCCEEECCSSCBC
T ss_pred CccCHHHH---hCCcCCCEEEccCCCcc
Confidence 76554333 45667777666666554
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=4.3e-17 Score=172.40 Aligned_cols=165 Identities=21% Similarity=0.245 Sum_probs=148.5
Q ss_pred CCCCCCCCCCcEEEcCCCCCCc-----------------ccCcccc--cCcccCEEecCCCCCCCccCCCCC--CcccEE
Q 012324 257 PMLMPRLNNLVILNLRSGKSLK-----------------SLPSGIF--NLEFLTKLDLSGCSKLKRLPEISS--GNVCWL 315 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L 315 (466)
|..++++++|++|+|++|.+.+ .+|..++ ++++|++|++++|.+.+.+|..+. .+|+.|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 4568999999999999998888 4999988 999999999999999999997554 588999
Q ss_pred eecCcc-Cc--ccChhhhccC-------CCCeeecccccccccccc--ccCCCCCCCEEEecCCCCCCCCCcccCCCCCC
Q 012324 316 FLRGTA-IE--ELPSSIDRLR-------RLGYLNLSDCKRLKSLPS--SLCKLKSLKVLNLCGCSNLQRLPECLGQLSSP 383 (466)
Q Consensus 316 ~l~~~~-i~--~lp~~l~~l~-------~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 383 (466)
++++|+ ++ .+|..++.++ +|++|++++|.+. .+|. .++++++|+.|++++|.+. .+| .++.+++|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 999998 87 4898888776 9999999999876 8998 8999999999999998877 888 89999999
Q ss_pred cEEEccCCCccccchhhhccCC-CcEeecccCcCCCcCCCCeE
Q 012324 384 IILNLAKTNIERIPESIIQLFV-LRYLLLSYSERFQSLPKPLF 425 (466)
Q Consensus 384 ~~L~l~~~~l~~lp~~l~~l~~-L~~L~l~~~~~~~~~p~~~~ 425 (466)
+.|++++|.+..+|..+.++++ |+.|++++|.+. .+|..+.
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~ 639 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred eEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence 9999999999999999999999 999999999866 7886543
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=2.4e-16 Score=156.14 Aligned_cols=159 Identities=26% Similarity=0.290 Sum_probs=96.0
Q ss_pred CCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccCh-hhhccCC
Q 012324 258 MLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPS-SIDRLRR 334 (466)
Q Consensus 258 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~-~l~~l~~ 334 (466)
..|.++++|++|++++|.+....+..+.++++|++|++++|.+....+..+. .+|++|++++|.+..+|. .+..+++
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence 4567777888888877766655556677777788888877765544333222 466777777777776655 4566677
Q ss_pred CCeeecccccccccccc-ccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcccc-chhhhccCCCcEeecc
Q 012324 335 LGYLNLSDCKRLKSLPS-SLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERI-PESIIQLFVLRYLLLS 412 (466)
Q Consensus 335 L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~ 412 (466)
|++|++++|...+.++. .+..+++|++|++++|.+. .+| .+..+++|+.|++++|.++.+ |..+.++++|+.|+++
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECC
Confidence 77777766555555543 3555666666666665433 333 345555555555555555533 3345555555555555
Q ss_pred cCcCCC
Q 012324 413 YSERFQ 418 (466)
Q Consensus 413 ~~~~~~ 418 (466)
+|.+.+
T Consensus 240 ~n~l~~ 245 (440)
T 3zyj_A 240 QSQIQV 245 (440)
T ss_dssp TCCCCE
T ss_pred CCceeE
Confidence 554433
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=4.5e-16 Score=154.69 Aligned_cols=184 Identities=23% Similarity=0.153 Sum_probs=97.3
Q ss_pred CCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCccCcccCh-hhhccCC
Q 012324 258 MLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGTAIEELPS-SIDRLRR 334 (466)
Q Consensus 258 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~~i~~lp~-~l~~l~~ 334 (466)
..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+ ..+|++|++++|.+..+|. .+..+++
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 172 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCc
Confidence 346666777777777776555555666667777777777766554333322 2456677777766665554 3555566
Q ss_pred CCeeecccccccccccc-ccCCCCCCCEEEecC----------------------CCCCCCCCcccCCCCCCcEEEccCC
Q 012324 335 LGYLNLSDCKRLKSLPS-SLCKLKSLKVLNLCG----------------------CSNLQRLPECLGQLSSPIILNLAKT 391 (466)
Q Consensus 335 L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~----------------------~~~~~~~p~~l~~l~~L~~L~l~~~ 391 (466)
|++|++++|...+.++. .+..+++|++|++++ |.+.+..|..|..+++|+.|++++|
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred ccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 66666655444444443 244455555555554 4444444444555555555555555
Q ss_pred Ccccc-chhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccC
Q 012324 392 NIERI-PESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 392 ~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
.++.+ |..+.++++|+.|++++|.+. .+|... +..+++|+.+....+.+.
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~--~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLAHNNLS-SLPHDL--FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTS--STTCTTCCEEECCSSCEE
T ss_pred cCceECHHHhcCCCCCCEEECCCCcCC-ccChHH--hccccCCCEEEccCCCcC
Confidence 55432 234445555555555555433 233222 123445555444444443
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=5e-17 Score=156.17 Aligned_cols=161 Identities=18% Similarity=0.099 Sum_probs=123.1
Q ss_pred CCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCC--CCCCcccEEeecCccCcccCh--hhhccC
Q 012324 258 MLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE--ISSGNVCWLFLRGTAIEELPS--SIDRLR 333 (466)
Q Consensus 258 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~l~~~~i~~lp~--~l~~l~ 333 (466)
..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+. ....++++|++++|.++.+|. .+..++
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 3578888999999988877776677788889999999998876654433 234578899999988888876 678888
Q ss_pred CCCeeecccccccccc-ccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhh-hccCCCcEeec
Q 012324 334 RLGYLNLSDCKRLKSL-PSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESI-IQLFVLRYLLL 411 (466)
Q Consensus 334 ~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l-~~l~~L~~L~l 411 (466)
+|++|++++|...+.+ +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+..+|..+ ..+++|++|++
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence 9999999888544444 566888888999999888888777888888888888888888777666543 34667777777
Q ss_pred ccCcCCC
Q 012324 412 SYSERFQ 418 (466)
Q Consensus 412 ~~~~~~~ 418 (466)
++|.+.+
T Consensus 230 ~~n~l~~ 236 (353)
T 2z80_A 230 RDTDLDT 236 (353)
T ss_dssp ESCBCTT
T ss_pred CCCcccc
Confidence 7666544
No 30
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=8.1e-17 Score=141.20 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=124.6
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcc-cChhhhccCCCCee
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEE-LPSSIDRLRRLGYL 338 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~-lp~~l~~l~~L~~L 338 (466)
...+++|+.|++++|.+. .+| .+..+++|++|++++|.+....+-....++++|++++|.++. .|..++.+++|++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 366789999999998655 666 588999999999999954332223344678999999998884 67788899999999
Q ss_pred eccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCC
Q 012324 339 NLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERF 417 (466)
Q Consensus 339 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 417 (466)
++++|.+....|..++.+++|++|++++|...+.+| .+..+++|+.|++++|.++.++ .+..+++|++|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 999988777778888899999999999987566666 6888999999999999998876 7888999999999988753
No 31
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=3.3e-16 Score=147.32 Aligned_cols=172 Identities=22% Similarity=0.180 Sum_probs=116.3
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCee
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYL 338 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L 338 (466)
.+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+...-....+++.|++++|.++.++. +..+++|++|
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVL 134 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEE
Confidence 46677888888888875444 343 77788888888888775543222333567888888888877664 7778888888
Q ss_pred eccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCC
Q 012324 339 NLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQ 418 (466)
Q Consensus 339 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 418 (466)
++++|.+. .++. ++.+++|++|++++|.+.+ ++. +..+++|+.|++++|.++.++. +..+++|++|++++|.+.+
T Consensus 135 ~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 135 YLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp ECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccC-cCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCc
Confidence 88877643 3333 6777888888888776554 333 7777888888888888777665 6777888888888777544
Q ss_pred cCCCCeEeccCCCCccccccCcccc
Q 012324 419 SLPKPLFLARGCLALEPFLGIIEDT 443 (466)
Q Consensus 419 ~~p~~~~~l~~~~~L~~l~~~~~~~ 443 (466)
+|. +..+++|+.+....+.+
T Consensus 210 -~~~----l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 210 -VSP----LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -CGG----GTTCTTCCEEEEEEEEE
T ss_pred -ccc----ccCCCCCCEEEccCCee
Confidence 331 45666666555544433
No 32
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.7e-16 Score=147.03 Aligned_cols=183 Identities=19% Similarity=0.129 Sum_probs=104.2
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccCh-hhhccCCC
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPS-SIDRLRRL 335 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~-~l~~l~~L 335 (466)
.+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+. .++++|++++|.+..++. .++.+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 455666666666666654444444566666666666666665544443322 355666666666665544 45666666
Q ss_pred Ceeecccccccc-ccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCc----EEEccCCCccccchhhhccCCCcEee
Q 012324 336 GYLNLSDCKRLK-SLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPI----ILNLAKTNIERIPESIIQLFVLRYLL 410 (466)
Q Consensus 336 ~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~----~L~l~~~~l~~lp~~l~~l~~L~~L~ 410 (466)
++|++++|.+.. .+|..+..+++|++|++++|.+.+..+..+..+++|+ .|++++|.++.++.......+|++|+
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~ 206 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEE
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEE
Confidence 666666665443 2455566666666666666655554444444444444 56666666665555444445677777
Q ss_pred cccCcCCCcCCCCeEeccCCCCccccccCccccC
Q 012324 411 LSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 411 l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
+++|.+. .+|... +.++++|+.+....+.+.
T Consensus 207 L~~n~l~-~~~~~~--~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 207 LDTNQLK-SVPDGI--FDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCSSCCS-CCCTTT--TTTCCSCCEEECCSSCBC
T ss_pred CCCCcee-ecCHhH--hcccccccEEEccCCccc
Confidence 7776643 344432 235666666666655554
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=2.5e-16 Score=148.09 Aligned_cols=180 Identities=22% Similarity=0.214 Sum_probs=125.4
Q ss_pred CCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccC-CC--CCCcccEEeecCccCccc-ChhhhccCCCCe
Q 012324 262 RLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLP-EI--SSGNVCWLFLRGTAIEEL-PSSIDRLRRLGY 337 (466)
Q Consensus 262 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~--~~~~l~~L~l~~~~i~~l-p~~l~~l~~L~~ 337 (466)
.+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ .. ...++++|++++|.+... |..+..+++|++
T Consensus 76 ~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp SCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred cccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 3456666666655332 455556677777777777776554433 12 224678888888887744 445777888888
Q ss_pred eecccccccc-ccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecccCc
Q 012324 338 LNLSDCKRLK-SLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSYSE 415 (466)
Q Consensus 338 L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 415 (466)
|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|++|++++|.
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 8888887655 467778888888888888887777777788888888888888888886654 67778888888888888
Q ss_pred CCCcCCCCeEeccCCCCccccccCccccC
Q 012324 416 RFQSLPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 416 ~~~~~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
+.+..|..+..+. ++|+.+....+.+.
T Consensus 235 l~~~~~~~~~~~~--~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 235 IMTSKKQELQHFP--SSLAFLNLTQNDFA 261 (306)
T ss_dssp CCBCSSSSCCCCC--TTCCEEECTTCCEE
T ss_pred CcccCHHHHHhhh--ccCCEEEccCCCee
Confidence 7777766654331 35666655555553
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=6.9e-17 Score=151.99 Aligned_cols=184 Identities=21% Similarity=0.236 Sum_probs=140.5
Q ss_pred CCCCCCCCCcEEEcCCCCCCc--ccCcccccCcccCEEecCCCCCCCccCCC--CCCcccEEeecCccCcccCh--hhhc
Q 012324 258 MLMPRLNNLVILNLRSGKSLK--SLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSGNVCWLFLRGTAIEELPS--SIDR 331 (466)
Q Consensus 258 ~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~l~~L~l~~~~i~~lp~--~l~~ 331 (466)
..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+.. +|.. ...++++|++++|.+..++. .+..
T Consensus 46 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 124 (306)
T 2z66_A 46 GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124 (306)
T ss_dssp TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTT
T ss_pred hHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhh
Confidence 346788889999998886552 235556678889999998887553 3432 23578999999998887764 6888
Q ss_pred cCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCC-CCCcccCCCCCCcEEEccCCCcccc-chhhhccCCCcEe
Q 012324 332 LRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQ-RLPECLGQLSSPIILNLAKTNIERI-PESIIQLFVLRYL 409 (466)
Q Consensus 332 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L 409 (466)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|+.|++++|.++.+ |..+.++++|++|
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence 9999999999988777777778889999999999987766 5788889999999999999999866 6678889999999
Q ss_pred ecccCcCCCcCCCCeEeccCCCCccccccCccccCC
Q 012324 410 LLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQR 445 (466)
Q Consensus 410 ~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~~ 445 (466)
++++|.+.+..+.. +.++++|+.+....+.+..
T Consensus 205 ~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 205 NMSHNNFFSLDTFP---YKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp ECTTSCCSBCCSGG---GTTCTTCCEEECTTSCCCB
T ss_pred ECCCCccCccChhh---ccCcccCCEeECCCCCCcc
Confidence 99998865543333 3456667766665554433
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=5.2e-16 Score=159.67 Aligned_cols=107 Identities=15% Similarity=0.075 Sum_probs=64.4
Q ss_pred hhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCc
Q 012324 328 SIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLR 407 (466)
Q Consensus 328 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~ 407 (466)
.++.+++|++|++++|.+.+..|..++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|+
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCC
Confidence 45566666666666666655556666666666666666655443 45555666666666666666666666666666677
Q ss_pred EeecccCcCCCcCCCCeEeccCCCCccccccCcc
Q 012324 408 YLLLSYSERFQSLPKPLFLARGCLALEPFLGIIE 441 (466)
Q Consensus 408 ~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~ 441 (466)
+|++++|.+.+ +| +..++.|+.+....+
T Consensus 328 ~L~L~~N~l~~-~~-----~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 328 NLYLDHNSIVT-LK-----LSTHHTLKNLTLSHN 355 (597)
T ss_dssp EEECCSSCCCC-CC-----CCTTCCCSEEECCSS
T ss_pred EEECCCCCCCC-cC-----hhhcCCCCEEEeeCC
Confidence 77776666433 22 334445554444333
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.67 E-value=2.2e-16 Score=157.05 Aligned_cols=110 Identities=20% Similarity=0.166 Sum_probs=70.1
Q ss_pred CCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcccc-chhhhccCCCcEeeccc
Q 012324 335 LGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERI-PESIIQLFVLRYLLLSY 413 (466)
Q Consensus 335 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~ 413 (466)
|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+ |..+.++++|+.|++++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 33333333333333455566677777777777777666677777777788888877777755 45677778888888887
Q ss_pred CcCCCcCCCCeEeccCCCCccccccCccccCCCC
Q 012324 414 SERFQSLPKPLFLARGCLALEPFLGIIEDTQRIP 447 (466)
Q Consensus 414 ~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~~~~ 447 (466)
|.+.+..|..+. ++++|+.+....+.+..++
T Consensus 357 N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 357 NHIRALGDQSFL---GLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp SCCCEECTTTTT---TCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhhcc---ccccccEEECCCCccccCC
Confidence 776655555443 4566666665555554444
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=4.9e-16 Score=154.43 Aligned_cols=158 Identities=22% Similarity=0.160 Sum_probs=127.3
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccChh-hhccCCCCeeec
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPSS-IDRLRRLGYLNL 340 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~~-l~~l~~L~~L~l 340 (466)
+++++|++++|.+.+..|..+.++++|++|++++|.+.+..+..+. .+|++|++++|.++.+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 6899999999988888888899999999999999988776665544 5889999999999988875 788999999999
Q ss_pred cccccccccccccCCCCCCCEEEecCCCCCCCCCc-ccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCc
Q 012324 341 SDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPE-CLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQS 419 (466)
Q Consensus 341 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 419 (466)
++|.+....+..+.++++|++|++++|+..+.+|. .+..+++|+.|++++|+++.+| .+..+++|+.|++++|.+.+.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCccc
Confidence 99986655556789999999999999877777665 4777778888877777777665 356666666666666665444
Q ss_pred CCC
Q 012324 420 LPK 422 (466)
Q Consensus 420 ~p~ 422 (466)
.|.
T Consensus 234 ~~~ 236 (452)
T 3zyi_A 234 RPG 236 (452)
T ss_dssp CGG
T ss_pred Ccc
Confidence 443
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=2.7e-16 Score=161.82 Aligned_cols=88 Identities=11% Similarity=-0.045 Sum_probs=63.4
Q ss_pred ccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCcCCCCeEeccCCC
Q 012324 352 SLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCL 431 (466)
Q Consensus 352 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~ 431 (466)
.++.+++|+.|++++|.+.+..|..++.+++|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+. .++
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~---~l~ 324 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP---QFD 324 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHH---HHT
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccc---cCC
Confidence 356677888888888877777788888888888888888888888777777888888888888755 5666543 344
Q ss_pred CccccccCcccc
Q 012324 432 ALEPFLGIIEDT 443 (466)
Q Consensus 432 ~L~~l~~~~~~~ 443 (466)
+|+.+....+.+
T Consensus 325 ~L~~L~L~~N~l 336 (597)
T 3oja_B 325 RLENLYLDHNSI 336 (597)
T ss_dssp TCSEEECCSSCC
T ss_pred CCCEEECCCCCC
Confidence 444444433333
No 39
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=1.5e-16 Score=150.10 Aligned_cols=193 Identities=19% Similarity=0.096 Sum_probs=149.3
Q ss_pred hhhhhcccCCCCCCCCCCCCCCcEEEcCCCCCCcccCcccccC-----cccCEEecCCCCCCCccCCCCC--CcccEEee
Q 012324 245 TACNKLIAKTPNPMLMPRLNNLVILNLRSGKSLKSLPSGIFNL-----EFLTKLDLSGCSKLKRLPEISS--GNVCWLFL 317 (466)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l 317 (466)
+..+...+..+....+..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..|..+. .++++|++
T Consensus 102 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp EEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC
T ss_pred ccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC
Confidence 34444433333322238999999999999987776 8777777 9999999999998777666544 58899999
Q ss_pred cCccCcc---cChhh--hccCCCCeeecccccccc--ccc-cccCCCCCCCEEEecCCCCCCCCC-cccCCCCCCcEEEc
Q 012324 318 RGTAIEE---LPSSI--DRLRRLGYLNLSDCKRLK--SLP-SSLCKLKSLKVLNLCGCSNLQRLP-ECLGQLSSPIILNL 388 (466)
Q Consensus 318 ~~~~i~~---lp~~l--~~l~~L~~L~l~~~~~~~--~~p-~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l 388 (466)
++|++.. +|..+ ..+++|++|++++|.+.+ .++ ..+..+++|++|++++|.+.+..| ..+..+++|+.|++
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 9998763 35555 889999999999998652 333 234578999999999998888775 45677899999999
Q ss_pred cCCCccccchhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccCC
Q 012324 389 AKTNIERIPESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQR 445 (466)
Q Consensus 389 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~~ 445 (466)
++|.++.+|..+. ++|++|++++|.+.+. |. +..+++|+.+....+.+..
T Consensus 261 s~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~----~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 261 SFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS----PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC----TTTSCEEEEEECTTCTTTC
T ss_pred CCCccChhhhhcc--CCceEEECCCCCCCCC-hh----HhhCCCCCEEeccCCCCCC
Confidence 9999999998776 8999999999986554 64 4577888887776665543
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=1.3e-15 Score=148.46 Aligned_cols=63 Identities=13% Similarity=0.007 Sum_probs=30.5
Q ss_pred cCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCc
Q 012324 353 LCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSE 415 (466)
Q Consensus 353 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~ 415 (466)
+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence 334444555555554444444444444555555555555544444444444455555555444
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=4.6e-16 Score=154.04 Aligned_cols=160 Identities=24% Similarity=0.193 Sum_probs=138.6
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccCh-hhhccCCCCeeec
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPS-SIDRLRRLGYLNL 340 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~-~l~~l~~L~~L~l 340 (466)
++++.|++++|.+....+..+.++++|++|++++|.+....+..+. .+|++|++++|.++.+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 6899999999988777778899999999999999987765554443 688999999999998887 5899999999999
Q ss_pred cccccccccccccCCCCCCCEEEecCCCCCCCCCc-ccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCc
Q 012324 341 SDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPE-CLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQS 419 (466)
Q Consensus 341 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 419 (466)
++|.+....+..+..+++|++|++++|+..+.++. .|..+++|+.|++++|+++.+|. +..+++|+.|++++|.+.+.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCcc
Confidence 99986655556789999999999999887777765 68999999999999999999984 88999999999999987766
Q ss_pred CCCCe
Q 012324 420 LPKPL 424 (466)
Q Consensus 420 ~p~~~ 424 (466)
.|..+
T Consensus 223 ~~~~~ 227 (440)
T 3zyj_A 223 RPGSF 227 (440)
T ss_dssp CTTTT
T ss_pred Chhhh
Confidence 66544
No 42
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=2e-15 Score=137.71 Aligned_cols=175 Identities=21% Similarity=0.175 Sum_probs=142.4
Q ss_pred CCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccCh-hhhccCCCCeeecc
Q 012324 265 NLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPS-SIDRLRRLGYLNLS 341 (466)
Q Consensus 265 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~-~l~~l~~L~~L~l~ 341 (466)
..+.++++++. ...+|..+. ++++.|++++|.+.+..+..+. .++++|++++|.++.++. .+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 56789998874 456776654 6899999999998877765444 688999999999997765 47999999999999
Q ss_pred ccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecccCcCCCcC
Q 012324 342 DCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSYSERFQSL 420 (466)
Q Consensus 342 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~ 420 (466)
+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|. .++++++|++|++++|.+.+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 998766656678899999999999988886666678999999999999999998877 6899999999999999876544
Q ss_pred CCCeEeccCCCCccccccCccccCC
Q 012324 421 PKPLFLARGCLALEPFLGIIEDTQR 445 (466)
Q Consensus 421 p~~~~~l~~~~~L~~l~~~~~~~~~ 445 (466)
|..+ .++++|+.+....+.+..
T Consensus 172 ~~~~---~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 HGAF---DRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTT---TTCTTCCEEECCSCCBCT
T ss_pred HHHH---hCCCCCCEEEeeCCceeC
Confidence 4333 456777777776666543
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=1e-15 Score=149.03 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=41.8
Q ss_pred ccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEee
Q 012324 331 RLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLL 410 (466)
Q Consensus 331 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~ 410 (466)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++.+|..+..+++|++|+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEE
Confidence 3344444555544444444444555555555555554333 234444445555555555555555555555555555555
Q ss_pred cccCc
Q 012324 411 LSYSE 415 (466)
Q Consensus 411 l~~~~ 415 (466)
+++|.
T Consensus 325 L~~N~ 329 (390)
T 3o6n_A 325 LDHNS 329 (390)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 55554
No 44
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=3.7e-16 Score=147.03 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=144.3
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeee
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLN 339 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~ 339 (466)
...+++|+.|++++|.+. .+| .+..+++|++|++++|.+.+..+-....++++|++++|.++.++ .+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 456789999999999544 456 58899999999999998776655344468899999999999876 689999999999
Q ss_pred ccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCc
Q 012324 340 LSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQS 419 (466)
Q Consensus 340 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 419 (466)
+++|.+.+ ++. +..+++|++|++++|.+.+. +. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+
T Consensus 114 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~- 187 (308)
T 1h6u_A 114 LTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD- 187 (308)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-
T ss_pred CCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc-
Confidence 99988544 554 89999999999999877654 33 8899999999999999998877 8999999999999998654
Q ss_pred CCCCeEeccCCCCccccccCccccCCCCC
Q 012324 420 LPKPLFLARGCLALEPFLGIIEDTQRIPH 448 (466)
Q Consensus 420 ~p~~~~~l~~~~~L~~l~~~~~~~~~~~~ 448 (466)
+|. +.++++|+.+....+.+..+..
T Consensus 188 ~~~----l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 188 ISP----LASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp CGG----GGGCTTCCEEECTTSCCCBCGG
T ss_pred Chh----hcCCCCCCEEEccCCccCcccc
Confidence 443 5677888887776666655553
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=7.9e-16 Score=154.08 Aligned_cols=167 Identities=22% Similarity=0.182 Sum_probs=129.8
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCccCccc-ChhhhccC
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGTAIEEL-PSSIDRLR 333 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~~i~~l-p~~l~~l~ 333 (466)
+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.+....+..+ ..+|++|++++|.+..+ |..+..++
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 4467888889999998887777778888888899999998887654444332 35778899988888865 45678888
Q ss_pred CCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecc
Q 012324 334 RLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLS 412 (466)
Q Consensus 334 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~ 412 (466)
+|++|++++|.+....+..+..+++|++|++++|.+....+..+.++++|+.|++++|.+..++. .+..+++|++|+++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 89999988888777777778888888888888887776655678888888888888888885544 67778888888888
Q ss_pred cCcCCCcCCCC
Q 012324 413 YSERFQSLPKP 423 (466)
Q Consensus 413 ~~~~~~~~p~~ 423 (466)
+|...+.+|..
T Consensus 209 ~~~~~~~~~~~ 219 (477)
T 2id5_A 209 HWPYLDTMTPN 219 (477)
T ss_dssp CCTTCCEECTT
T ss_pred CCccccccCcc
Confidence 87776666653
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.66 E-value=5.8e-16 Score=159.83 Aligned_cols=160 Identities=22% Similarity=0.102 Sum_probs=90.9
Q ss_pred CCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC---CCcccEEeecCccCccc---Chhhhc
Q 012324 258 MLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNVCWLFLRGTAIEEL---PSSIDR 331 (466)
Q Consensus 258 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~l~~~~i~~l---p~~l~~ 331 (466)
..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|... ..++++|++++|.+... |..+..
T Consensus 295 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 374 (606)
T 3t6q_A 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374 (606)
T ss_dssp SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT
T ss_pred hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc
Confidence 346666777777777776655556566666777777777666655554331 23556666666666643 445566
Q ss_pred cCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCc-ccCCCCCCcEEEccCCCccc-cchhhhccCCCcEe
Q 012324 332 LRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPE-CLGQLSSPIILNLAKTNIER-IPESIIQLFVLRYL 409 (466)
Q Consensus 332 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~l~~-lp~~l~~l~~L~~L 409 (466)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|. .+..+++|+.|++++|.+.. .|..+.++++|++|
T Consensus 375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 66666666666655555555555555666666655554444332 24555555555555555542 23344455555555
Q ss_pred ecccCcCC
Q 012324 410 LLSYSERF 417 (466)
Q Consensus 410 ~l~~~~~~ 417 (466)
++++|.+.
T Consensus 455 ~L~~n~l~ 462 (606)
T 3t6q_A 455 NLQGNHFP 462 (606)
T ss_dssp ECTTCBCG
T ss_pred ECCCCCCC
Confidence 55555443
No 47
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=2.7e-16 Score=157.38 Aligned_cols=179 Identities=17% Similarity=0.077 Sum_probs=131.6
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCc------------------cCCCCCCcccEEeec
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKR------------------LPEISSGNVCWLFLR 318 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~------------------~~~~~~~~l~~L~l~ 318 (466)
+..|..+++|++|++++|.+.+..| +..+++|++|++++|.+.+. ++.....+++.|+++
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~ 128 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECC
T ss_pred HHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECC
Confidence 3456677777777777776555444 66677777777766654321 111233567889999
Q ss_pred CccCccc-ChhhhccCCCCeeeccccccccccccccC-CCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcccc
Q 012324 319 GTAIEEL-PSSIDRLRRLGYLNLSDCKRLKSLPSSLC-KLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERI 396 (466)
Q Consensus 319 ~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~l 396 (466)
+|.++.+ |..++.+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+. | ....+++|+.|++++|.++.+
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC
Confidence 9888866 44688899999999999988887777775 789999999999877655 3 344689999999999999999
Q ss_pred chhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCcccc
Q 012324 397 PESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDT 443 (466)
Q Consensus 397 p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~ 443 (466)
|..+..+++|+.|++++|.+. .+|..+. .+++|+.+....+.+
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~---~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNKLV-LIEKALR---FSQNLEHFDLRGNGF 249 (487)
T ss_dssp CGGGGGGTTCSEEECTTSCCC-EECTTCC---CCTTCCEEECTTCCB
T ss_pred CHhHcCCCCccEEEecCCcCc-ccchhhc---cCCCCCEEEcCCCCC
Confidence 888999999999999998866 4776643 455666655555544
No 48
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=7.6e-16 Score=142.56 Aligned_cols=159 Identities=22% Similarity=0.189 Sum_probs=133.2
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccC-hhhhccCCCCeeec
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELP-SSIDRLRRLGYLNL 340 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp-~~l~~l~~L~~L~l 340 (466)
++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+. .++++|++++|.++.++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 5799999999977766666899999999999999987765554433 58899999999999776 56899999999999
Q ss_pred cccccccccccccCCCCCCCEEEecCCCCCC-CCCcccCCCCCCcEEEccCCCccccc-hhhhccCCCc----EeecccC
Q 012324 341 SDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQ-RLPECLGQLSSPIILNLAKTNIERIP-ESIIQLFVLR----YLLLSYS 414 (466)
Q Consensus 341 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~----~L~l~~~ 414 (466)
++|.+.+..+..++.+++|++|++++|.+.. .+|..+..+++|+.|++++|.++.++ ..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 9998766666579999999999999988876 46999999999999999999999765 4677777777 8999999
Q ss_pred cCCCcCCCC
Q 012324 415 ERFQSLPKP 423 (466)
Q Consensus 415 ~~~~~~p~~ 423 (466)
.+.+ +|..
T Consensus 188 ~l~~-~~~~ 195 (276)
T 2z62_A 188 PMNF-IQPG 195 (276)
T ss_dssp CCCE-ECTT
T ss_pred cccc-cCcc
Confidence 8654 4443
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=153.01 Aligned_cols=159 Identities=21% Similarity=0.211 Sum_probs=105.3
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccCh-hhhccC
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPS-SIDRLR 333 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~-~l~~l~ 333 (466)
+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..+. .+|+.|++++|.++.+|. .+..++
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 176 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC
Confidence 33467778888888888877776777777888888888888776665554433 467888888888887765 467778
Q ss_pred CCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecc
Q 012324 334 RLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLS 412 (466)
Q Consensus 334 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~ 412 (466)
+|+.|++++|.+.+..+..+..+++|+.|++++|+..+.+|..+....+|+.|++++|.++.+|. .+.++++|+.|+++
T Consensus 177 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256 (477)
T ss_dssp TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECC
T ss_pred CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECC
Confidence 88888888777665555567777777777777766665555544444455555555555554442 34445555555555
Q ss_pred cCc
Q 012324 413 YSE 415 (466)
Q Consensus 413 ~~~ 415 (466)
+|.
T Consensus 257 ~n~ 259 (477)
T 2id5_A 257 YNP 259 (477)
T ss_dssp SSC
T ss_pred CCc
Confidence 544
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=5.9e-16 Score=159.80 Aligned_cols=181 Identities=18% Similarity=0.118 Sum_probs=117.0
Q ss_pred CCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCC-CC--CCcccEEeecCccCcc-cChhhhccC
Q 012324 258 MLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE-IS--SGNVCWLFLRGTAIEE-LPSSIDRLR 333 (466)
Q Consensus 258 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~--~~~l~~L~l~~~~i~~-lp~~l~~l~ 333 (466)
..+..+++|++|++++|.+ ..+|..+..+++|++|++++|.+.+..|. .+ ...+++|++++|.+.. .|..++.++
T Consensus 370 ~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp HHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 3455667777777777743 33556677777777777777776665552 22 2456777777777764 455667777
Q ss_pred CCCeeeccccccccc-cccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcccc-chhhhccCCCcEeec
Q 012324 334 RLGYLNLSDCKRLKS-LPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERI-PESIIQLFVLRYLLL 411 (466)
Q Consensus 334 ~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l 411 (466)
+|++|++++|.+.+. .|..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.+ |..+.++++|++|++
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 777777777766553 566677777777777777777666666777777777777777777744 566777777777777
Q ss_pred ccCcCCCcCCCCeEeccCCC-CccccccCcccc
Q 012324 412 SYSERFQSLPKPLFLARGCL-ALEPFLGIIEDT 443 (466)
Q Consensus 412 ~~~~~~~~~p~~~~~l~~~~-~L~~l~~~~~~~ 443 (466)
++|.+. .+|..+ .+++ +|+.+....+.+
T Consensus 529 ~~N~l~-~~p~~~---~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 529 SFNRIE-TSKGIL---QHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TTSCCC-CEESCG---GGSCTTCCEEECCSCCC
T ss_pred CCCcCc-ccCHhH---hhhcccCcEEEccCCCc
Confidence 777643 555552 2333 355544444444
No 51
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=2.5e-15 Score=139.99 Aligned_cols=159 Identities=21% Similarity=0.168 Sum_probs=134.1
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCccCcccCh-hhhccC
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGTAIEELPS-SIDRLR 333 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~~i~~lp~-~l~~l~ 333 (466)
+..+..+++|++|++++|.+.+ ++. ...+++|++|++++|.+. .+|..+ ...+++|++++|+++.+|. .+..++
T Consensus 48 ~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~ 124 (290)
T 1p9a_G 48 LATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124 (290)
T ss_dssp GGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT
T ss_pred HHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC
Confidence 3457889999999999996554 444 378999999999999865 566543 3578999999999998874 689999
Q ss_pred CCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeeccc
Q 012324 334 RLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSY 413 (466)
Q Consensus 334 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~ 413 (466)
+|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++.+|..+..+++|+.+++++
T Consensus 125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 99999999998665555557899999999999988775555567889999999999999999999999999999999999
Q ss_pred CcCCC
Q 012324 414 SERFQ 418 (466)
Q Consensus 414 ~~~~~ 418 (466)
|++..
T Consensus 205 Np~~C 209 (290)
T 1p9a_G 205 NPWLC 209 (290)
T ss_dssp CCBCC
T ss_pred CCccC
Confidence 98653
No 52
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=2e-15 Score=140.71 Aligned_cols=152 Identities=23% Similarity=0.166 Sum_probs=125.6
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCee
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYL 338 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L 338 (466)
.+..+++|++|++++|.+.+. +. +.++++|++|++++|.+.+..+-....++++|++++|.++.+ +.+..+++|++|
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L 139 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESL 139 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEE
T ss_pred hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEE
Confidence 477889999999999966654 43 889999999999999876533333446889999999999987 468899999999
Q ss_pred eccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCC
Q 012324 339 NLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQ 418 (466)
Q Consensus 339 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 418 (466)
++++|.+.+. +.++.+++|++|++++|.+.+..| +..+++|+.|++++|.++.++. +..+++|+.|++++|++..
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 9999875543 468899999999999987766544 8899999999999999998865 8899999999999998654
No 53
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.5e-15 Score=134.28 Aligned_cols=159 Identities=18% Similarity=0.104 Sum_probs=125.7
Q ss_pred CCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCccCcccChh-hhccCCCCeee
Q 012324 263 LNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGTAIEELPSS-IDRLRRLGYLN 339 (466)
Q Consensus 263 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~~i~~lp~~-l~~l~~L~~L~ 339 (466)
.++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..++++|++++|.++.+|.. +..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 4689999999997776656667899999999999988765444332 35789999999999888765 68899999999
Q ss_pred ccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCc
Q 012324 340 LSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQS 419 (466)
Q Consensus 340 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 419 (466)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +.+++|+.|+++.|.+.+.
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCce
Confidence 9988765554555788999999999998777665666888999999999998765 3356788999999998888
Q ss_pred CCCCeEec
Q 012324 420 LPKPLFLA 427 (466)
Q Consensus 420 ~p~~~~~l 427 (466)
+|..+..+
T Consensus 181 ip~~~~~l 188 (208)
T 2o6s_A 181 VRNSAGSV 188 (208)
T ss_dssp BBCTTSSB
T ss_pred eeccCccc
Confidence 88766543
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.64 E-value=4.9e-16 Score=160.37 Aligned_cols=164 Identities=20% Similarity=0.166 Sum_probs=105.5
Q ss_pred CCCCCCCCCcEEEcCCCCCCcccC-cccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcc--cChhhhcc
Q 012324 258 MLMPRLNNLVILNLRSGKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEE--LPSSIDRL 332 (466)
Q Consensus 258 ~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~--lp~~l~~l 332 (466)
..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+. ..+++|++++|.+.. +|..++.+
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 345666677777776665555555 4566666777777776666555554333 456677777666663 46666666
Q ss_pred CCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccC-CCcEeec
Q 012324 333 RRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLF-VLRYLLL 411 (466)
Q Consensus 333 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~-~L~~L~l 411 (466)
++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+|..+..++ +|++|++
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEc
Confidence 777777777666666556666666777777777666666666666666777777777777666666666665 4777777
Q ss_pred ccCcCCCcCC
Q 012324 412 SYSERFQSLP 421 (466)
Q Consensus 412 ~~~~~~~~~p 421 (466)
++|++..+-+
T Consensus 553 ~~N~~~c~c~ 562 (606)
T 3vq2_A 553 TNNSVACICE 562 (606)
T ss_dssp CSCCCCCSST
T ss_pred cCCCcccCCc
Confidence 7666655443
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=1.3e-15 Score=144.82 Aligned_cols=178 Identities=20% Similarity=0.160 Sum_probs=130.8
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccChhhhccCCCCeeecc
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPSSIDRLRRLGYLNLS 341 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~ 341 (466)
+++++|++++|.+.+..+..+.++++|++|++++|.+.+..|..+. .++++|++++|.++.+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 6899999999987776666899999999999999998877676554 588999999999999998765 799999999
Q ss_pred ccccccccccccCCCCCCCEEEecCCCCCC--CCCcccCCCCCCcEEEccCCCccccc----------------------
Q 012324 342 DCKRLKSLPSSLCKLKSLKVLNLCGCSNLQ--RLPECLGQLSSPIILNLAKTNIERIP---------------------- 397 (466)
Q Consensus 342 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~l~~lp---------------------- 397 (466)
+|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++.+|
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 209 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECT
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCH
Confidence 998776666678999999999999987753 55666777766666666666555444
Q ss_pred hhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccCCC
Q 012324 398 ESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQRI 446 (466)
Q Consensus 398 ~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~~~ 446 (466)
..+..+++|++|++++|.+.+..|..+ .++++|+.+....+.+..+
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~l 255 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSL---ANTPHLRELHLNNNKLVKV 255 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTG---GGSTTCCEEECCSSCCSSC
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhc---cCCCCCCEEECCCCcCccC
Confidence 345556666666666665444333332 3445555555544444443
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=1.2e-15 Score=138.13 Aligned_cols=179 Identities=15% Similarity=0.132 Sum_probs=117.4
Q ss_pred CCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCC-CC--CCcccEEeecC-ccCcccCh-hhhccCCCCeee
Q 012324 265 NLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE-IS--SGNVCWLFLRG-TAIEELPS-SIDRLRRLGYLN 339 (466)
Q Consensus 265 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~--~~~l~~L~l~~-~~i~~lp~-~l~~l~~L~~L~ 339 (466)
+|++|++++|.+.+..+..+.++++|++|++++|..+..++. .+ ..++++|++++ |.++.+|. .+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 777888877765555555677788888888888764444443 22 24678888887 77777764 467778888888
Q ss_pred ccccccccccccccCCCCCCC---EEEecCC-CCCCCCCcccCCCCCCc-EEEccCCCccccchhhhccCCCcEeecccC
Q 012324 340 LSDCKRLKSLPSSLCKLKSLK---VLNLCGC-SNLQRLPECLGQLSSPI-ILNLAKTNIERIPESIIQLFVLRYLLLSYS 414 (466)
Q Consensus 340 l~~~~~~~~~p~~~~~l~~L~---~L~l~~~-~~~~~~p~~l~~l~~L~-~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~ 414 (466)
+++|.+.+ +|. +..+++|+ +|++++| .+....+..|..+++|+ .|++++|.++.+|......++|++|++++|
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 88776443 665 67777777 8888877 44444444577778888 888888887777765444477888888877
Q ss_pred cCCCcCCCCeEeccCC-CCccccccCccccCCCC
Q 012324 415 ERFQSLPKPLFLARGC-LALEPFLGIIEDTQRIP 447 (466)
Q Consensus 415 ~~~~~~p~~~~~l~~~-~~L~~l~~~~~~~~~~~ 447 (466)
+.+..+|...+ .++ ++|+.+....+.+..++
T Consensus 190 ~~l~~i~~~~~--~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 190 KYLTVIDKDAF--GGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp TTCCEECTTTT--TTCSBCCSEEECTTCCCCCCC
T ss_pred CCcccCCHHHh--hccccCCcEEECCCCccccCC
Confidence 53444544321 344 56666555555554444
No 57
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.63 E-value=2.9e-15 Score=143.51 Aligned_cols=175 Identities=20% Similarity=0.197 Sum_probs=83.7
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCC-CCCCcccEEeecCccCcccChhhhccCCCCee
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE-ISSGNVCWLFLRGTAIEELPSSIDRLRRLGYL 338 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L 338 (466)
+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.. ++. ....++++|++++|.+..++. +..+++|++|
T Consensus 62 ~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-ISALQNLTNLRELYLNEDNISDISP-LANLTKMYSL 137 (347)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-chHHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence 4445555555555553322 222 4455555555555554332 221 122344555555555554443 4445555555
Q ss_pred ecccccccccccc---------------------ccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccc
Q 012324 339 NLSDCKRLKSLPS---------------------SLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIP 397 (466)
Q Consensus 339 ~l~~~~~~~~~p~---------------------~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp 397 (466)
++++|......+. .+..+++|++|++++|.+.. ++. +..+++|+.|++++|.+..++
T Consensus 138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 138 NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred ECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCc
Confidence 5554433333322 04444455555554443332 221 444555555555555555443
Q ss_pred hhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccCCC
Q 012324 398 ESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQRI 446 (466)
Q Consensus 398 ~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~~~ 446 (466)
. +..+++|++|++++|.+.+ +|. +.++++|+.+....+.+..+
T Consensus 216 ~-~~~~~~L~~L~l~~n~l~~-~~~----~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 216 P-VANMTRLNSLKIGNNKITD-LSP----LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp G-GGGCTTCCEEECCSSCCCC-CGG----GTTCTTCCEEECCSSCCCCC
T ss_pred h-hhcCCcCCEEEccCCccCC-Ccc----hhcCCCCCEEECCCCccCCC
Confidence 3 5566667777776665433 222 45666666665555544443
No 58
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=2.6e-15 Score=151.98 Aligned_cols=156 Identities=18% Similarity=0.176 Sum_probs=131.8
Q ss_pred ccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcc---cChhhhccCCCCeeeccccccccccccc-cCCCCC
Q 012324 285 FNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEE---LPSSIDRLRRLGYLNLSDCKRLKSLPSS-LCKLKS 358 (466)
Q Consensus 285 ~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~---lp~~l~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~ 358 (466)
..+++|++|++++|.+.+..|..+. ..+++|++++|.++. +|..++.+++|++|++++|.+.+.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 6789999999999998887776544 578999999999985 4567899999999999999877767764 788999
Q ss_pred CCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCcccccc
Q 012324 359 LKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLG 438 (466)
Q Consensus 359 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~ 438 (466)
|++|++++|.+.+..|..+. ++|+.|++++|+++.+|..+..+++|++|++++|.+. .+|.. .+.++++|+.+..
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~--~~~~l~~L~~L~l 475 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDG--IFDRLTSLQKIWL 475 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTT--TTTTCTTCCEEEC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHH--HhccCCcccEEEC
Confidence 99999999998888887665 7999999999999999998889999999999999865 67776 3457788888777
Q ss_pred CccccCC
Q 012324 439 IIEDTQR 445 (466)
Q Consensus 439 ~~~~~~~ 445 (466)
..+.+..
T Consensus 476 ~~N~~~c 482 (520)
T 2z7x_B 476 HTNPWDC 482 (520)
T ss_dssp CSSCBCC
T ss_pred cCCCCcc
Confidence 7776643
No 59
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=2.7e-15 Score=139.79 Aligned_cols=172 Identities=24% Similarity=0.252 Sum_probs=140.5
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCee
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYL 338 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L 338 (466)
.+..+++|+.|++++|.+. .++. +..+++|++|++++|.+.+..+-....++++|++++|.++.+|. +..+++|++|
T Consensus 41 ~~~~l~~L~~L~l~~~~i~-~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp CHHHHHTCCEEECTTSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred chhhcCcccEEEccCCCcc-cChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 3556789999999999544 4554 88999999999999998776664445788999999999998765 8999999999
Q ss_pred eccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCC
Q 012324 339 NLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQ 418 (466)
Q Consensus 339 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 418 (466)
++++|.+.. + +.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.+.
T Consensus 118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~- 191 (291)
T 1h6t_A 118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS- 191 (291)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-
T ss_pred ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC-
Confidence 999987544 4 4588999999999999877654 578999999999999999998876 899999999999999754
Q ss_pred cCCCCeEeccCCCCccccccCcccc
Q 012324 419 SLPKPLFLARGCLALEPFLGIIEDT 443 (466)
Q Consensus 419 ~~p~~~~~l~~~~~L~~l~~~~~~~ 443 (466)
.+|. +.++++|+.+....+.+
T Consensus 192 ~l~~----l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 192 DLRA----LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp BCGG----GTTCTTCSEEEEEEEEE
T ss_pred CChh----hccCCCCCEEECcCCcc
Confidence 4543 56677777666544433
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=5.9e-16 Score=146.30 Aligned_cols=176 Identities=18% Similarity=0.101 Sum_probs=124.3
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCC-------------------CCCccCCCCCCcccEEeecCc
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCS-------------------KLKRLPEISSGNVCWLFLRGT 320 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------------~~~~~~~~~~~~l~~L~l~~~ 320 (466)
+..+++|++|++++|.+.+..+ +..+++|++|++++|. +.+.. .....+++.|++++|
T Consensus 54 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~N 130 (317)
T 3o53_A 54 LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYLANN 130 (317)
T ss_dssp HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEE-ECCCSSCEEEECCSS
T ss_pred hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcC-ccccCCCCEEECCCC
Confidence 4555555666665554443332 4555555555555554 33222 223456889999999
Q ss_pred cCcccCh-hhhccCCCCeeecccccccccccccc-CCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch
Q 012324 321 AIEELPS-SIDRLRRLGYLNLSDCKRLKSLPSSL-CKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE 398 (466)
Q Consensus 321 ~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~ 398 (466)
.++.+++ .++.+++|++|++++|.+.+..+..+ ..+++|++|++++|.+... | ....+++|+.|++++|.++.+|.
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh
Confidence 9887755 67889999999999998777666666 4789999999999876644 4 33458999999999999999988
Q ss_pred hhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccC
Q 012324 399 SIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 399 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
.+..+++|+.|++++|.+. .+|..+ ..+++|+.+....+.+.
T Consensus 209 ~~~~l~~L~~L~L~~N~l~-~l~~~~---~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 209 EFQSAAGVTWISLRNNKLV-LIEKAL---RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGGTTCSEEECTTSCCC-EECTTC---CCCTTCCEEECTTCCCB
T ss_pred hhcccCcccEEECcCCccc-chhhHh---hcCCCCCEEEccCCCcc
Confidence 8999999999999998755 577764 45666776666555543
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.63 E-value=4.1e-15 Score=141.49 Aligned_cols=178 Identities=15% Similarity=0.118 Sum_probs=133.6
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCC--ccCCCCCC-cccEEeecCccCcccChhhhccCCCCeeec
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLPEISSG-NVCWLFLRGTAIEELPSSIDRLRRLGYLNL 340 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~-~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l 340 (466)
++|++|++++|.+....+..+..+++|++|++++|.+.. ..|..+.. .+++|++++|.++.+|..+. ++|++|++
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l 200 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHL 200 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEEC
Confidence 677777887776555444557788888888888887642 33333222 67888888888888887654 78999999
Q ss_pred cccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCcC
Q 012324 341 SDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQSL 420 (466)
Q Consensus 341 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~ 420 (466)
++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+.+..
T Consensus 201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccC
Confidence 99887777777899999999999999988887777899999999999999999999999999999999999999865433
Q ss_pred CCCeEec---cCCCCccccccCcccc
Q 012324 421 PKPLFLA---RGCLALEPFLGIIEDT 443 (466)
Q Consensus 421 p~~~~~l---~~~~~L~~l~~~~~~~ 443 (466)
+..+... .....|+.+....+.+
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred hhHccccccccccccccceEeecCcc
Confidence 3333221 1134555555544443
No 62
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=4.7e-15 Score=132.24 Aligned_cols=152 Identities=16% Similarity=0.097 Sum_probs=117.2
Q ss_pred cEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCC---CCCcccEEeecCccCcccCh-hhhccCCCCeeeccc
Q 012324 267 VILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI---SSGNVCWLFLRGTAIEELPS-SIDRLRRLGYLNLSD 342 (466)
Q Consensus 267 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~l~~~~i~~lp~-~l~~l~~L~~L~l~~ 342 (466)
+.++++++. ...+|..+ ...+++|++++|.+.+..+.. ...+++.|++++|.++.++. .+.++++|++|++++
T Consensus 14 ~~l~~s~n~-l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCC-cccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 477777774 34466544 344678888888766654532 23467888888888887765 688899999999999
Q ss_pred cccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcccc-chhhhccCCCcEeecccCcCCCcCC
Q 012324 343 CKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERI-PESIIQLFVLRYLLLSYSERFQSLP 421 (466)
Q Consensus 343 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~p 421 (466)
|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|++..+-+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 887666666688899999999999888888788888999999999999999866 6688889999999999988765443
No 63
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=2.6e-16 Score=148.32 Aligned_cols=175 Identities=15% Similarity=-0.007 Sum_probs=121.2
Q ss_pred CCCCCCcEEEcCCCCCCcccC----cccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCccCcc---cC--hhh
Q 012324 261 PRLNNLVILNLRSGKSLKSLP----SGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGTAIEE---LP--SSI 329 (466)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~~i~~---lp--~~l 329 (466)
..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+ ..++++|++++|.+.. ++ ..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 778888888888887666444 234467888888888888766655543 3577888888887652 32 223
Q ss_pred hccCCCCeeecccccccccccc----ccCCCCCCCEEEecCCCCCCCCCcccCCC---CCCcEEEccCCCccccchhhhc
Q 012324 330 DRLRRLGYLNLSDCKRLKSLPS----SLCKLKSLKVLNLCGCSNLQRLPECLGQL---SSPIILNLAKTNIERIPESIIQ 402 (466)
Q Consensus 330 ~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~l~~~~~~~~~p~~l~~l---~~L~~L~l~~~~l~~lp~~l~~ 402 (466)
..+++|++|++++|.+. .++. .++.+++|++|++++|.+.+..|..+..+ ++|+.|++++|.++.+|..+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~- 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP- 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-
T ss_pred hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc-
Confidence 67788888888887653 3332 24567888888888888777777776666 588888888888888877664
Q ss_pred cCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCcccc
Q 012324 403 LFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDT 443 (466)
Q Consensus 403 l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~ 443 (466)
++|+.|++++|.+.+ +|. ...+++|+.+....+.+
T Consensus 272 -~~L~~L~Ls~N~l~~-~~~----~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 272 -AKLRVLDLSSNRLNR-APQ----PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp -SCCSCEECCSCCCCS-CCC----TTSCCCCSCEECSSTTT
T ss_pred -CCCCEEECCCCcCCC-Cch----hhhCCCccEEECcCCCC
Confidence 788888888887554 333 24556666666655544
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=4e-16 Score=156.18 Aligned_cols=179 Identities=15% Similarity=-0.032 Sum_probs=122.8
Q ss_pred CCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChh-------------
Q 012324 262 RLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSS------------- 328 (466)
Q Consensus 262 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~------------- 328 (466)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|.....+|++|++++|.++.+|..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 4569999999999888877888999999999999999988777744556788888888877765422
Q ss_pred ----hhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccC-CCCCCcEEEccCCCccccchhhhcc
Q 012324 329 ----IDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLG-QLSSPIILNLAKTNIERIPESIIQL 403 (466)
Q Consensus 329 ----l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~l~~~~l~~lp~~l~~l 403 (466)
...+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+. .+++|+.|++++|.++.+|. ...+
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l 190 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVF 190 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccC
Confidence 01245566666666665555565666677777777777766666666654 57777777777777776644 3357
Q ss_pred CCCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccCC
Q 012324 404 FVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQR 445 (466)
Q Consensus 404 ~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~~ 445 (466)
++|++|++++|.+.+ +|..+ .++++|+.+....+.+..
T Consensus 191 ~~L~~L~Ls~N~l~~-~~~~~---~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 191 AKLKTLDLSSNKLAF-MGPEF---QSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp TTCCEEECCSSCCCE-ECGGG---GGGTTCSEEECTTSCCCE
T ss_pred CCCCEEECCCCCCCC-CCHhH---cCCCCccEEEecCCcCcc
Confidence 777777777777554 44333 344555555544444333
No 65
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=6.1e-15 Score=150.67 Aligned_cols=154 Identities=23% Similarity=0.172 Sum_probs=130.2
Q ss_pred CCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCe
Q 012324 258 MLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGY 337 (466)
Q Consensus 258 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~ 337 (466)
+.+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+...-....+|+.|++++|.+..++ .+..+++|+.
T Consensus 59 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 135 (605)
T 1m9s_A 59 QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLES 135 (605)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSE
T ss_pred hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCE
Confidence 357889999999999997665444 8899999999999998765332334468899999999999874 5899999999
Q ss_pred eeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCC
Q 012324 338 LNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERF 417 (466)
Q Consensus 338 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 417 (466)
|++++|.+.+. ..++.+++|+.|++++|.+.+..| +..+++|+.|+|++|.++.+| .+..+++|+.|++++|++.
T Consensus 136 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 136 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp EECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred EECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 99999886554 568999999999999988877655 899999999999999999885 5899999999999999876
Q ss_pred Cc
Q 012324 418 QS 419 (466)
Q Consensus 418 ~~ 419 (466)
+.
T Consensus 211 ~~ 212 (605)
T 1m9s_A 211 NK 212 (605)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=141.88 Aligned_cols=155 Identities=21% Similarity=0.136 Sum_probs=131.6
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCc--cC-C---CCCCcccEEeecCccCcccChh----h
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKR--LP-E---ISSGNVCWLFLRGTAIEELPSS----I 329 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~-~---~~~~~l~~L~l~~~~i~~lp~~----l 329 (466)
+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+. ++ . ....++++|++++|+++.++.. +
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 44689999999999988888888899999999999999987653 22 1 2345789999999999876653 5
Q ss_pred hccCCCCeeeccccccccccccccCCC---CCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCC
Q 012324 330 DRLRRLGYLNLSDCKRLKSLPSSLCKL---KSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVL 406 (466)
Q Consensus 330 ~~l~~L~~L~l~~~~~~~~~p~~~~~l---~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L 406 (466)
+.+++|++|++++|.+.+..|..+..+ ++|++|++++|.+. .+|..+. ++|+.|++++|+++.+|. +..+++|
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L 296 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEV 296 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCc
Confidence 788999999999999887778878777 69999999998877 7788775 899999999999998876 7889999
Q ss_pred cEeecccCcCCC
Q 012324 407 RYLLLSYSERFQ 418 (466)
Q Consensus 407 ~~L~l~~~~~~~ 418 (466)
+.|++++|++..
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999998653
No 67
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=1.7e-15 Score=156.27 Aligned_cols=181 Identities=20% Similarity=0.089 Sum_probs=96.7
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCC---CCCcccEEeecCccCccc-ChhhhccCC
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI---SSGNVCWLFLRGTAIEEL-PSSIDRLRR 334 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~l~~~~i~~l-p~~l~~l~~ 334 (466)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|.. ....+++|++++|.+... |..++.+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 3445555555555555444444555555555555555555544443322 123456666666655533 334555666
Q ss_pred CCeeeccccccccc---cccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc-ccchhhhccCCCcEee
Q 012324 335 LGYLNLSDCKRLKS---LPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE-RIPESIIQLFVLRYLL 410 (466)
Q Consensus 335 L~~L~l~~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~ 410 (466)
|++|++++|.+.+. .+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++ ..|..+.++++| +|+
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 66666666554431 1234555666666666666655555566666666666666666666 334456666666 666
Q ss_pred cccCcCCCcCCCCeEeccCCCCccccccCcccc
Q 012324 411 LSYSERFQSLPKPLFLARGCLALEPFLGIIEDT 443 (466)
Q Consensus 411 l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~ 443 (466)
+++|.+.+..|..+. .+++|+.+....+.+
T Consensus 530 L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 530 LASNHISIILPSLLP---ILSQQRTINLRQNPL 559 (606)
T ss_dssp CCSSCCCCCCGGGHH---HHHTSSEEECTTCCE
T ss_pred CcCCcccccCHhhcc---cCCCCCEEeCCCCCc
Confidence 666665544443332 334444444444444
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.61 E-value=6.3e-15 Score=146.99 Aligned_cols=152 Identities=24% Similarity=0.246 Sum_probs=96.6
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeee
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLN 339 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~ 339 (466)
+.++++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+..|......++.|++++|.+..++ .+..+++|++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~ 249 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLD 249 (466)
T ss_dssp GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEE
T ss_pred hccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEE
Confidence 6677777788887775443 33 36677777777777777666555444556777777777776653 466677777777
Q ss_pred ccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCc
Q 012324 340 LSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQS 419 (466)
Q Consensus 340 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 419 (466)
+++|.+.+..| +..+++|+.|++++|.+.+..| +..+++|+.|++++|.+..++. +..+++|+.|++++|.+.+.
T Consensus 250 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC
T ss_pred CCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc
Confidence 77766443322 5666677777776665554322 5666666666666666665544 55666666666666654443
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=3.5e-15 Score=135.01 Aligned_cols=164 Identities=14% Similarity=0.105 Sum_probs=130.6
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccC-cccccCcccCEEecCC-CCCCCccCCCC--CCcccEEeecCccCcccChhhhcc
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLP-SGIFNLEFLTKLDLSG-CSKLKRLPEIS--SGNVCWLFLRGTAIEELPSSIDRL 332 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~~~~~~~~~~~--~~~l~~L~l~~~~i~~lp~~l~~l 332 (466)
+..+..+++|++|++++|.....++ ..+.++++|++|++++ |.+....+..+ ..++++|++++|.++.+|. +..+
T Consensus 48 ~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l 126 (239)
T 2xwt_C 48 SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKV 126 (239)
T ss_dssp TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTC
T ss_pred HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccc
Confidence 3468899999999999996344444 5788999999999998 66554443432 3578999999999999987 8888
Q ss_pred CCCC---eeecccc-ccccccccccCCCCCCC-EEEecCCCCCCCCCcccCCCCCCcEEEccCC-Cccccch-hhhcc-C
Q 012324 333 RRLG---YLNLSDC-KRLKSLPSSLCKLKSLK-VLNLCGCSNLQRLPECLGQLSSPIILNLAKT-NIERIPE-SIIQL-F 404 (466)
Q Consensus 333 ~~L~---~L~l~~~-~~~~~~p~~~~~l~~L~-~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~-~l~~lp~-~l~~l-~ 404 (466)
++|+ +|++++| .+....+..+..+++|+ +|++++|.+. .+|......++|+.|++++| .++.+|. .+.++ +
T Consensus 127 ~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 8998 9999999 54444345588999999 9999998776 66655444489999999999 4998865 67889 9
Q ss_pred CCcEeecccCcCCCcCCCC
Q 012324 405 VLRYLLLSYSERFQSLPKP 423 (466)
Q Consensus 405 ~L~~L~l~~~~~~~~~p~~ 423 (466)
+|+.|++++|.+. .+|..
T Consensus 206 ~L~~L~l~~N~l~-~l~~~ 223 (239)
T 2xwt_C 206 GPSLLDVSQTSVT-ALPSK 223 (239)
T ss_dssp CCSEEECTTCCCC-CCCCT
T ss_pred CCcEEECCCCccc-cCChh
Confidence 9999999998855 56654
No 70
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.60 E-value=7.5e-15 Score=140.59 Aligned_cols=176 Identities=19% Similarity=0.211 Sum_probs=95.4
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeee
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLN 339 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~ 339 (466)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+......++.|++++|.+..++. +..+++|++|+
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~ 227 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLK 227 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEE
Confidence 5666777777777664433322 56667777777777665543332333455666666666655544 55666666666
Q ss_pred ccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCc
Q 012324 340 LSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQS 419 (466)
Q Consensus 340 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 419 (466)
+++|.+.. ++. +..+++|++|++++|.+.. + ..+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+.
T Consensus 228 l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 228 IGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNE 302 (347)
T ss_dssp CCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGG
T ss_pred ccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCc
Confidence 66655332 332 5556666666666654443 2 34555666666666666655553 355566666666666654443
Q ss_pred CCCCeEeccCCCCccccccCccccCCC
Q 012324 420 LPKPLFLARGCLALEPFLGIIEDTQRI 446 (466)
Q Consensus 420 ~p~~~~~l~~~~~L~~l~~~~~~~~~~ 446 (466)
.|..+ .++++|+.+....+.+..+
T Consensus 303 ~~~~l---~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 303 DMEVI---GGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp GHHHH---HTCTTCSEEECCSSSCCCC
T ss_pred ChhHh---hccccCCEEEccCCccccc
Confidence 33222 2344444444444444333
No 71
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=1.4e-14 Score=129.21 Aligned_cols=129 Identities=22% Similarity=0.211 Sum_probs=82.8
Q ss_pred cccCEEecCCCCCCCccCCCCC--CcccEEeecCccCccc-ChhhhccCCCCeeecccccccccccc-ccCCCCCCCEEE
Q 012324 288 EFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEEL-PSSIDRLRRLGYLNLSDCKRLKSLPS-SLCKLKSLKVLN 363 (466)
Q Consensus 288 ~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 363 (466)
++|+.|++++|.+.+..+..+. .++++|++++|.++.+ |..+.++++|++|++++|.+. .+|. .+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEE
Confidence 4455555555554433332222 3455555555666655 556777777777777777644 3443 356777777777
Q ss_pred ecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecccCcCC
Q 012324 364 LCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSYSERF 417 (466)
Q Consensus 364 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~ 417 (466)
+++|.+.+..|..|..+++|+.|++++|.++.++. .+..+++|++|++++|++.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77777776667777777777777777777776654 4667777777777777653
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.60 E-value=1e-14 Score=149.01 Aligned_cols=172 Identities=16% Similarity=0.101 Sum_probs=130.8
Q ss_pred CcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccC---hhhhccCCCCeeec
Q 012324 266 LVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELP---SSIDRLRRLGYLNL 340 (466)
Q Consensus 266 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp---~~l~~l~~L~~L~l 340 (466)
|+.|++++|.+.... ....+++|++|++++|.+.+..|..+. .++++|++++|.++.++ ..++.+++|++|++
T Consensus 333 L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 333 IKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred ceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 555555555332211 115788899999999988887776543 57899999999888665 45788999999999
Q ss_pred cccccccccccc-cCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCc
Q 012324 341 SDCKRLKSLPSS-LCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQS 419 (466)
Q Consensus 341 ~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 419 (466)
++|.+.+.+|.. +..+++|++|++++|.+.+..|..+. ++|+.|++++|.++.+|..+.++++|++|++++|.+. .
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~ 487 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-S 487 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-C
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-C
Confidence 998877757754 67889999999999888877776654 7899999999999999988889999999999988865 6
Q ss_pred CCCCeEeccCCCCccccccCccccC
Q 012324 420 LPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 420 ~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
+|.. .+..+++|+.+....+.+.
T Consensus 488 l~~~--~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 488 VPDG--VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCTT--STTTCTTCCCEECCSCCBC
T ss_pred CCHH--HHhcCCCCCEEEecCCCcC
Confidence 7766 2456777777777666654
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.60 E-value=6e-15 Score=154.37 Aligned_cols=161 Identities=20% Similarity=0.129 Sum_probs=135.9
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCccCcccCh-hhhccCCCCeeec
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGTAIEELPS-SIDRLRRLGYLNL 340 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~~i~~lp~-~l~~l~~L~~L~l 340 (466)
+++++|++++|.+.+..+..+.++++|++|++++|.+.+..|..+ ...+++|++++|.++.+|. .++++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 689999999997777666679999999999999998877766543 3688999999999999887 5899999999999
Q ss_pred cccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhh--ccCCCcEeecccCcCC
Q 012324 341 SDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SII--QLFVLRYLLLSYSERF 417 (466)
Q Consensus 341 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~--~l~~L~~L~l~~~~~~ 417 (466)
++|.+.+..|..++++++|++|++++|.+.+..|..++++++|+.|++++|.++.++. .+. .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 9998766556778999999999999998888888889999999999999999997655 343 4689999999999877
Q ss_pred CcCCCCe
Q 012324 418 QSLPKPL 424 (466)
Q Consensus 418 ~~~p~~~ 424 (466)
+..|..+
T Consensus 185 ~~~~~~~ 191 (680)
T 1ziw_A 185 EFSPGCF 191 (680)
T ss_dssp CBCTTGG
T ss_pred ccChhhh
Confidence 7666543
No 74
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=1.6e-14 Score=129.59 Aligned_cols=151 Identities=23% Similarity=0.228 Sum_probs=100.7
Q ss_pred cEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccChh-hhccCCCCeeecccc
Q 012324 267 VILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPSS-IDRLRRLGYLNLSDC 343 (466)
Q Consensus 267 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~~-l~~l~~L~~L~l~~~ 343 (466)
+.++.+++ ....+|..+ .++|++|++++|.+.+..|..+. .+|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 22 ~~v~c~~~-~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCC-CcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34555444 334445433 25566666666665554443322 3556666666777777654 577888888888887
Q ss_pred ccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecccCcCCCcCC
Q 012324 344 KRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSYSERFQSLP 421 (466)
Q Consensus 344 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~p 421 (466)
.+.+..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|++....+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 755444455677888888888886655 677788888888888888888887764 57778888888888887665443
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=2.2e-15 Score=153.55 Aligned_cols=151 Identities=19% Similarity=0.137 Sum_probs=69.3
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccChh-hhccCCCCeeec
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPSS-IDRLRRLGYLNL 340 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~~-l~~l~~L~~L~l 340 (466)
++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+. .++++|++++|.+..+|+. ++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 3455555555544444444455555555555555544443333222 2445555555555544433 445555555555
Q ss_pred ccccccc-ccccccCCCCCCCEEEecCCCCCCCCC-cccCCCCCCcEEEccCCCcc-ccchhhhccCCCcEeecccC
Q 012324 341 SDCKRLK-SLPSSLCKLKSLKVLNLCGCSNLQRLP-ECLGQLSSPIILNLAKTNIE-RIPESIIQLFVLRYLLLSYS 414 (466)
Q Consensus 341 ~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~ 414 (466)
++|.+.+ ..|..++++++|++|++++|...+.+| ..+..+++|+.|++++|.++ ..|..++.+++|++|+++.|
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 5544332 233344455555555555544333333 24444555555555555444 23444444444444444433
No 76
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=145.87 Aligned_cols=177 Identities=18% Similarity=0.130 Sum_probs=141.8
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccChh-hhccCCCCeeec
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPSS-IDRLRRLGYLNL 340 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~~-l~~l~~L~~L~l 340 (466)
++|++|++++|.+.+..+..+.++++|++|++++|.+.+..|..+. .++++|++++|.++.+|.. ++++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 5899999999977665555799999999999999988776665444 5889999999999999886 889999999999
Q ss_pred ccccccccccc--ccCCCCCCCEEEecCCCCCC-CCCcccCCCCCCcEEEccCCCcccc-chhhhccCCCcEeecccCcC
Q 012324 341 SDCKRLKSLPS--SLCKLKSLKVLNLCGCSNLQ-RLPECLGQLSSPIILNLAKTNIERI-PESIIQLFVLRYLLLSYSER 416 (466)
Q Consensus 341 ~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~ 416 (466)
++|.+. .+|. .+..+++|++|++++|+... ..|..+..+++|+.|++++|.++.+ |..+.++++|++|++++|.+
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 998754 5665 68899999999999985444 4467899999999999999999955 77899999999999999985
Q ss_pred CCcCCCCeEeccCCCCccccccCccccC
Q 012324 417 FQSLPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 417 ~~~~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
+.+|.... ..+++|+.+....+.+.
T Consensus 211 -~~~~~~~~--~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 211 -ILLLEIFV--DVTSSVECLELRDTDLD 235 (353)
T ss_dssp -TTHHHHHH--HHTTTEEEEEEESCBCT
T ss_pred -ccchhhhh--hhcccccEEECCCCccc
Confidence 44554322 23455555554444333
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=2.8e-15 Score=152.85 Aligned_cols=162 Identities=20% Similarity=0.169 Sum_probs=143.0
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCC--CCCcccEEeecCccCcc--cChhhhcc
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSGNVCWLFLRGTAIEE--LPSSIDRL 332 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~l~~L~l~~~~i~~--lp~~l~~l 332 (466)
+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|.. ...++++|++++|.++. .|..++++
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 456899999999999999888877888999999999999999988776653 34688999999999984 46789999
Q ss_pred CCCCeeeccccccccccc-cccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhh-hccCCCcEee
Q 012324 333 RRLGYLNLSDCKRLKSLP-SSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESI-IQLFVLRYLL 410 (466)
Q Consensus 333 ~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l-~~l~~L~~L~ 410 (466)
++|++|++++|...+.+| ..+.++++|++|++++|.+.+..|..++.+++|+.|+++.|.+..+|..+ ..+++|++|+
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence 999999999998677776 57899999999999999999999999999999999999999998887754 5699999999
Q ss_pred cccCcCCC
Q 012324 411 LSYSERFQ 418 (466)
Q Consensus 411 l~~~~~~~ 418 (466)
+++|.+.+
T Consensus 203 L~~n~l~~ 210 (549)
T 2z81_A 203 LRDTNLAR 210 (549)
T ss_dssp EESCBCTT
T ss_pred ccCCcccc
Confidence 99998766
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=147.37 Aligned_cols=158 Identities=17% Similarity=0.155 Sum_probs=139.6
Q ss_pred CCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCC--ccCC--CCCCcccEEeecCccCcc-cChh-hhccCC
Q 012324 261 PRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLPE--ISSGNVCWLFLRGTAIEE-LPSS-IDRLRR 334 (466)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~--~~~~~l~~L~l~~~~i~~-lp~~-l~~l~~ 334 (466)
..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+ .+|. ....++++|++++|.+.. +|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 688999999999999888899999999999999999999876 4453 344689999999999997 8875 788999
Q ss_pred CCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchh-hhccCCCcEeeccc
Q 012324 335 LGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPES-IIQLFVLRYLLLSY 413 (466)
Q Consensus 335 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~ 413 (466)
|++|++++|.+.+..|..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+|.. +.++++|++|++++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 99999999998888887664 79999999998776 8898888999999999999999999986 88999999999999
Q ss_pred CcCCCcCC
Q 012324 414 SERFQSLP 421 (466)
Q Consensus 414 ~~~~~~~p 421 (466)
|++.++.+
T Consensus 478 N~~~c~c~ 485 (520)
T 2z7x_B 478 NPWDCSCP 485 (520)
T ss_dssp SCBCCCHH
T ss_pred CCCcccCC
Confidence 99876443
No 79
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.59 E-value=2.2e-14 Score=142.28 Aligned_cols=169 Identities=19% Similarity=0.141 Sum_probs=103.5
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeee
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLN 339 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~ 339 (466)
++.+++|++|++++|.+.+ ++ ++++++|++|++++|.+.+ +|-.....+++|++++|.++.++ ++.+++|++|+
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~ 154 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELD 154 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEE
T ss_pred cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ecCCCCCcCCEEECCCCccceec--cccCCcCCEEE
Confidence 5555666666666664443 22 5566666666666665444 33333345566666666666553 55666666666
Q ss_pred ccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCc
Q 012324 340 LSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQS 419 (466)
Q Consensus 340 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 419 (466)
+++|...+.+ .++.+++|++|++++|.+.+ +| +..+++|+.|++++|.++.++ ++.+++|++|++++|.+.+
T Consensus 155 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 155 CHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp CTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-
T ss_pred CCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-
Confidence 6666545554 25566777777777665554 44 666777777777777777663 6777778888887777555
Q ss_pred CCCCeEeccCCCCccccccCccccCCCC
Q 012324 420 LPKPLFLARGCLALEPFLGIIEDTQRIP 447 (466)
Q Consensus 420 ~p~~~~~l~~~~~L~~l~~~~~~~~~~~ 447 (466)
+| +..+++|+.+....+.+..++
T Consensus 227 ip-----~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 227 ID-----VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CC-----CTTCTTCSEEECCSSCCSCCC
T ss_pred cC-----ccccCCCCEEEeeCCcCCCcC
Confidence 55 456677777666555555443
No 80
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=4.2e-15 Score=130.20 Aligned_cols=152 Identities=15% Similarity=0.129 Sum_probs=125.9
Q ss_pred cccCcccCEEecCCCCCCCccCC-CCCCcccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEE
Q 012324 284 IFNLEFLTKLDLSGCSKLKRLPE-ISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVL 362 (466)
Q Consensus 284 l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 362 (466)
...+++|++|++++|.+. .+|. ....++++|++++|.+..++ .+..+++|++|++++|.+.+..|..++.+++|++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhhcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 467899999999998876 4443 33468899999999877665 78899999999999999887788889999999999
Q ss_pred EecCCCCCCCCCcccCCCCCCcEEEccCCC-ccccchhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCcc
Q 012324 363 NLCGCSNLQRLPECLGQLSSPIILNLAKTN-IERIPESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIE 441 (466)
Q Consensus 363 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~-l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~ 441 (466)
++++|.+.+..|..+..+++|+.|++++|. ++.+| .+.++++|++|++++|.+.. +| .+.++++|+.+....+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~----~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR----GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT----TGGGCSSCCEEEECBC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH----HhccCCCCCEEEeeCc
Confidence 999999888888899999999999999998 77887 68999999999999998554 44 3556777777766555
Q ss_pred cc
Q 012324 442 DT 443 (466)
Q Consensus 442 ~~ 443 (466)
.+
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 43
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.58 E-value=6.1e-15 Score=150.96 Aligned_cols=182 Identities=19% Similarity=0.193 Sum_probs=134.5
Q ss_pred CCCCCCcEEEcCCCCCCccc--CcccccCcccCEEecCCCCCCCccCC-CCCCcccEEeecCccCcccCh--hhhccCCC
Q 012324 261 PRLNNLVILNLRSGKSLKSL--PSGIFNLEFLTKLDLSGCSKLKRLPE-ISSGNVCWLFLRGTAIEELPS--SIDRLRRL 335 (466)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~l~~~~i~~lp~--~l~~l~~L 335 (466)
..+++|++|++++|.+.+.. |..+..+++|++|++++|.+.+..+. ....+++.|++++|.+...+. .+..+++|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 56778888888877655432 55667788888888888775554333 223577888888888876543 57788888
Q ss_pred CeeeccccccccccccccCCCCCCCEEEecCCCCC-CCCCcccCCCCCCcEEEccCCCcccc-chhhhccCCCcEeeccc
Q 012324 336 GYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNL-QRLPECLGQLSSPIILNLAKTNIERI-PESIIQLFVLRYLLLSY 413 (466)
Q Consensus 336 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~ 413 (466)
++|++++|...+..|..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|.++.+ |..+.++++|++|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 88888888877777777888888888888888776 56788888888888888888888855 66788888889999888
Q ss_pred CcCCCcCCCCeEeccCCCCccccccCccccCC
Q 012324 414 SERFQSLPKPLFLARGCLALEPFLGIIEDTQR 445 (466)
Q Consensus 414 ~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~~ 445 (466)
|.+.+..|..+ .++++|+.+....+.+..
T Consensus 504 n~l~~~~~~~~---~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 504 NQLKSVPDGIF---DRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp SCCSCCCTTTT---TTCTTCCEEECCSSCBCC
T ss_pred CcCCCCCHHHh---hcccCCcEEEecCCcccC
Confidence 87665444333 466777777776666543
No 82
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=1.1e-14 Score=148.84 Aligned_cols=174 Identities=25% Similarity=0.267 Sum_probs=143.0
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCee
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYL 338 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L 338 (466)
.+..+++|+.|++++|.+ ..++ .+..+++|+.|+|++|.+.+..|.....+|+.|++++|.+..+| .+..+++|++|
T Consensus 38 ~~~~L~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp CHHHHTTCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred chhcCCCCCEEECcCCCC-CCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 356789999999999854 4455 48899999999999999887666455578899999999999877 68999999999
Q ss_pred eccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCC
Q 012324 339 NLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQ 418 (466)
Q Consensus 339 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 418 (466)
++++|.+.. ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.+.+
T Consensus 115 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 115 SLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp ECTTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred EecCCCCCC-Cc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC
Confidence 999998554 44 589999999999999887764 578999999999999999998766 9999999999999998654
Q ss_pred cCCCCeEeccCCCCccccccCccccCC
Q 012324 419 SLPKPLFLARGCLALEPFLGIIEDTQR 445 (466)
Q Consensus 419 ~~p~~~~~l~~~~~L~~l~~~~~~~~~ 445 (466)
+| .+..|++|+.+....+.+..
T Consensus 190 -l~----~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 -LR----ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -CG----GGTTCTTCSEEECCSEEEEC
T ss_pred -Ch----HHccCCCCCEEEccCCcCcC
Confidence 43 25667777776665554433
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.58 E-value=1.7e-14 Score=143.90 Aligned_cols=171 Identities=18% Similarity=0.156 Sum_probs=102.1
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeee
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLN 339 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~ 339 (466)
+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+..+......++.|++++|.+..++. +..+++|++|+
T Consensus 217 ~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 293 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLE 293 (466)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEE
Confidence 4445666666666664333 22 355666666666666665555443334566777777776666555 66667777777
Q ss_pred ccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCc
Q 012324 340 LSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQS 419 (466)
Q Consensus 340 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 419 (466)
+++|.+.+ ++. ++.+++|+.|++++|.+.+..| +..+++|+.|++++|.++.++ .+.++++|+.|++++|.+.+.
T Consensus 294 L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 294 LNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBC
T ss_pred cCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCcc
Confidence 77665433 332 5666777777777766655444 556677777777777666653 466677777777777765554
Q ss_pred CCCCeEeccCCCCccccccCcccc
Q 012324 420 LPKPLFLARGCLALEPFLGIIEDT 443 (466)
Q Consensus 420 ~p~~~~~l~~~~~L~~l~~~~~~~ 443 (466)
.| +..+++|+.+....+.+
T Consensus 369 ~~-----~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 369 TP-----LANLTRITQLGLNDQAW 387 (466)
T ss_dssp GG-----GTTCTTCCEEECCCEEE
T ss_pred ch-----hhcCCCCCEEeccCCcc
Confidence 44 34555555544444433
No 84
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.58 E-value=5.5e-14 Score=139.43 Aligned_cols=146 Identities=21% Similarity=0.130 Sum_probs=116.3
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCc-cCcccChhhhccCCCCee
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGT-AIEELPSSIDRLRRLGYL 338 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~-~i~~lp~~l~~l~~L~~L 338 (466)
++.+++|++|++++|.+.+ +| ++.+++|++|++++|.+.+ ++......+++|++++| .+..+ .++.+++|++|
T Consensus 102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 7788999999999886655 44 7888999999999988766 45445567899999888 45555 36788899999
Q ss_pred eccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCC
Q 012324 339 NLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQ 418 (466)
Q Consensus 339 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 418 (466)
++++|.+.+ +| ++.+++|+.|++++|.+.+. .++.+++|+.|++++|+++.+| ++.+++|++|++++|.+.+
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence 999887544 55 77888999999988877654 3788899999999999998887 7888999999999888665
Q ss_pred c
Q 012324 419 S 419 (466)
Q Consensus 419 ~ 419 (466)
.
T Consensus 248 ~ 248 (457)
T 3bz5_A 248 L 248 (457)
T ss_dssp C
T ss_pred c
Confidence 3
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=155.43 Aligned_cols=163 Identities=21% Similarity=0.134 Sum_probs=132.7
Q ss_pred CCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccC-CCCC--CcccEEeecCccCccc-ChhhhccCCCCee
Q 012324 263 LNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLP-EISS--GNVCWLFLRGTAIEEL-PSSIDRLRRLGYL 338 (466)
Q Consensus 263 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~--~~l~~L~l~~~~i~~l-p~~l~~l~~L~~L 338 (466)
.+++++|++++|.+.+..|..+.++++|++|++++|...+.++ ..+. .+|++|++++|.+..+ |..++++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 4789999999998877778889999999999999997777764 3333 4779999999999866 7788999999999
Q ss_pred eccccccccccccc--cCCCCCCCEEEecCCCCCCCCC-cccCCCCCCcEEEccCCCcc-ccchhhhcc--CCCcEeecc
Q 012324 339 NLSDCKRLKSLPSS--LCKLKSLKVLNLCGCSNLQRLP-ECLGQLSSPIILNLAKTNIE-RIPESIIQL--FVLRYLLLS 412 (466)
Q Consensus 339 ~l~~~~~~~~~p~~--~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l--~~L~~L~l~ 412 (466)
++++|.+.+..|.. ++++++|++|++++|.+.+..| ..++++++|+.|++++|.++ ..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99998877766655 8899999999999988876654 57899999999999999988 456677776 888888888
Q ss_pred cCcCCCcCCCCeE
Q 012324 413 YSERFQSLPKPLF 425 (466)
Q Consensus 413 ~~~~~~~~p~~~~ 425 (466)
.|.+.+..|..+.
T Consensus 183 ~n~l~~~~~~~~~ 195 (844)
T 3j0a_A 183 ANSLYSRVSVDWG 195 (844)
T ss_dssp CSBSCCCCCCCCC
T ss_pred CCccccccccchh
Confidence 8888777766543
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.57 E-value=3e-14 Score=149.04 Aligned_cols=158 Identities=22% Similarity=0.196 Sum_probs=76.7
Q ss_pred CCCCCCCCCcEEEcCCCCCCcccC-cccccCcccCEEecCCCCCCCccCCCC--------------------------C-
Q 012324 258 MLMPRLNNLVILNLRSGKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLPEIS--------------------------S- 309 (466)
Q Consensus 258 ~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~--------------------------~- 309 (466)
..+..+++|+.|++++|.+.+.+| ..+..+++|++|++++|.+.+..+..+ .
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 446667777777777776655554 456666667777776665433222211 1
Q ss_pred -CcccEEeecCccCcccCh-hhhccCCCCeeecccccccccc----c----cccCCCCCCCEEEecCCCCCCCCCcccCC
Q 012324 310 -GNVCWLFLRGTAIEELPS-SIDRLRRLGYLNLSDCKRLKSL----P----SSLCKLKSLKVLNLCGCSNLQRLPECLGQ 379 (466)
Q Consensus 310 -~~l~~L~l~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~----p----~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 379 (466)
.+++.|++++|+++.+|+ .+..+++|++|++++|.+.+.. | ..+..+++|+.|++++|.+....+..|..
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 234444444444444433 2344444555554444432211 0 11344445555555444433221223445
Q ss_pred CCCCcEEEccCCCccccchh-hhccCCCcEeecccCc
Q 012324 380 LSSPIILNLAKTNIERIPES-IIQLFVLRYLLLSYSE 415 (466)
Q Consensus 380 l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 415 (466)
+++|+.|++++|+++.+|.. +.++++|+.|++++|.
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCc
Confidence 55555555555555544432 3445555555555554
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=4.8e-16 Score=148.17 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=82.6
Q ss_pred CCCCCCCcEEEcCCCCCCcc-cCcccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCc-cCc--ccChhhhccC
Q 012324 260 MPRLNNLVILNLRSGKSLKS-LPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGT-AIE--ELPSSIDRLR 333 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~-~i~--~lp~~l~~l~ 333 (466)
+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+ ..++++|++++| .++ .++..+..++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 34556666666666654433 55555566666666666665444333221 245566666665 454 2444455566
Q ss_pred CCCeeecccc-ccccc-cccccCCCC-CCCEEEecCC--CCC-CCCCcccCCCCCCcEEEccCCC-cc-ccchhhhccCC
Q 012324 334 RLGYLNLSDC-KRLKS-LPSSLCKLK-SLKVLNLCGC--SNL-QRLPECLGQLSSPIILNLAKTN-IE-RIPESIIQLFV 405 (466)
Q Consensus 334 ~L~~L~l~~~-~~~~~-~p~~~~~l~-~L~~L~l~~~--~~~-~~~p~~l~~l~~L~~L~l~~~~-l~-~lp~~l~~l~~ 405 (466)
+|++|++++| .+... ++..+..++ +|++|++++| .+. ..+|..+..+++|+.|++++|. ++ ..+..+.++++
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 6666666665 43322 344455555 5666666555 222 3344445555566666666555 33 34445555566
Q ss_pred CcEeecccCc
Q 012324 406 LRYLLLSYSE 415 (466)
Q Consensus 406 L~~L~l~~~~ 415 (466)
|++|++++|.
T Consensus 249 L~~L~l~~~~ 258 (336)
T 2ast_B 249 LQHLSLSRCY 258 (336)
T ss_dssp CCEEECTTCT
T ss_pred CCEeeCCCCC
Confidence 6666665554
No 88
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=1.6e-15 Score=143.29 Aligned_cols=179 Identities=15% Similarity=-0.029 Sum_probs=115.0
Q ss_pred CCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChh------------
Q 012324 261 PRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSS------------ 328 (466)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~------------ 328 (466)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+.....++++|++++|.++.+|..
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~ 110 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCc
Confidence 34679999999999887777778999999999999999987766644446778888888877765421
Q ss_pred -----hhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCccc-CCCCCCcEEEccCCCccccchhhhc
Q 012324 329 -----IDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECL-GQLSSPIILNLAKTNIERIPESIIQ 402 (466)
Q Consensus 329 -----l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~~~~l~~lp~~l~~ 402 (466)
...+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..+ ..+++|+.|++++|.++.++. ...
T Consensus 111 l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~ 189 (317)
T 3o53_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVV 189 (317)
T ss_dssp CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCC
T ss_pred cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccc
Confidence 0123445555555555444444455566666666666666655545444 356667777777777666543 234
Q ss_pred cCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccC
Q 012324 403 LFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 403 l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
+++|++|++++|.+. .+|..+ .++++|+.+....+.+.
T Consensus 190 l~~L~~L~Ls~N~l~-~l~~~~---~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 190 FAKLKTLDLSSNKLA-FMGPEF---QSAAGVTWISLRNNKLV 227 (317)
T ss_dssp CTTCCEEECCSSCCC-EECGGG---GGGTTCSEEECTTSCCC
T ss_pred cccCCEEECCCCcCC-cchhhh---cccCcccEEECcCCccc
Confidence 677777777776644 344433 34455555554444333
No 89
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=9e-14 Score=122.78 Aligned_cols=152 Identities=24% Similarity=0.267 Sum_probs=123.2
Q ss_pred cEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCccCcccChh-hhccCCCCeeecccc
Q 012324 267 VILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGTAIEELPSS-IDRLRRLGYLNLSDC 343 (466)
Q Consensus 267 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~~i~~lp~~-l~~l~~L~~L~l~~~ 343 (466)
+.++.+++. ...+|..+ .++|++|++++|.+.+..+..+ ..++++|++++|.++.+|.. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQG-RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCC-ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 456666663 34456443 5689999999998776555433 36889999999999988775 589999999999999
Q ss_pred ccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchh-hhccCCCcEeecccCcCCCcCC
Q 012324 344 KRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPES-IIQLFVLRYLLLSYSERFQSLP 421 (466)
Q Consensus 344 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~p 421 (466)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|.. +..+++|++|++++|++.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 86655455578999999999999888776666789999999999999999988764 7889999999999998776554
No 90
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=1.1e-14 Score=124.02 Aligned_cols=135 Identities=24% Similarity=0.190 Sum_probs=103.0
Q ss_pred CCCcEEEcCCCCCC-cccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeeccc
Q 012324 264 NNLVILNLRSGKSL-KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSD 342 (466)
Q Consensus 264 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~ 342 (466)
++|+.|++++|.+. +.+|..+..+++|++|++++|. ++.+ ..++.+++|++|++++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~----------------------l~~~-~~~~~l~~L~~L~Ls~ 80 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----------------------LISV-SNLPKLPKLKKLELSE 80 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC----------------------CCCC-SSCCCCSSCCEEEEES
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC----------------------CCCh-hhhccCCCCCEEECcC
Confidence 78999999998766 6788878888889888888865 3333 4566777888888888
Q ss_pred cccccccccccCCCCCCCEEEecCCCCCCC-CCcccCCCCCCcEEEccCCCccccch----hhhccCCCcEeecccCcCC
Q 012324 343 CKRLKSLPSSLCKLKSLKVLNLCGCSNLQR-LPECLGQLSSPIILNLAKTNIERIPE----SIIQLFVLRYLLLSYSERF 417 (466)
Q Consensus 343 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~l~~lp~----~l~~l~~L~~L~l~~~~~~ 417 (466)
|.+.+.+|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.++.+|. .+..+++|++|++++|..
T Consensus 81 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~- 159 (168)
T 2ell_A 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED- 159 (168)
T ss_dssp CCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS-
T ss_pred CcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh-
Confidence 776666666666688888888888766543 22678888889999999888887776 678889999999988873
Q ss_pred CcCCC
Q 012324 418 QSLPK 422 (466)
Q Consensus 418 ~~~p~ 422 (466)
..+|.
T Consensus 160 ~~~~~ 164 (168)
T 2ell_A 160 QEAPD 164 (168)
T ss_dssp CBCCS
T ss_pred hhccc
Confidence 34443
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=2.3e-14 Score=146.46 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=138.6
Q ss_pred CCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCC--ccCCC--CCCcccEEeecCccCcc-cChh-hhccCC
Q 012324 261 PRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLPEI--SSGNVCWLFLRGTAIEE-LPSS-IDRLRR 334 (466)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~--~~~~l~~L~l~~~~i~~-lp~~-l~~l~~ 334 (466)
..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+ .+|.. ...++++|++++|.+.. +|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 688999999999999888899999999999999999998775 33433 34688999999999996 8875 788999
Q ss_pred CCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchh-hhccCCCcEeeccc
Q 012324 335 LGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPES-IIQLFVLRYLLLSY 413 (466)
Q Consensus 335 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~ 413 (466)
|++|++++|.+.+..|..+. ++|++|++++|.+. .+|..+..+++|+.|++++|+++.+|.. +..+++|+.|++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence 99999999998887777554 79999999998665 7888888999999999999999999987 89999999999999
Q ss_pred CcCCCcCCC
Q 012324 414 SERFQSLPK 422 (466)
Q Consensus 414 ~~~~~~~p~ 422 (466)
|++.++.|.
T Consensus 507 N~~~c~c~~ 515 (562)
T 3a79_B 507 NPWDCTCPG 515 (562)
T ss_dssp CCBCCCHHH
T ss_pred CCcCCCcch
Confidence 998765543
No 92
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=2.8e-14 Score=124.30 Aligned_cols=130 Identities=21% Similarity=0.157 Sum_probs=95.9
Q ss_pred CEEecCCCCCCCccCCCCCCcccEEeecCccCcccChh--hhccCCCCeeeccccccccccccccCCCCCCCEEEecCCC
Q 012324 291 TKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSS--IDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCS 368 (466)
Q Consensus 291 ~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~--l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 368 (466)
++++++++.+ +.+|..+...+++|++++|.++.++.. ++.+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCc-CcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 4566665543 445555555666677777777776653 7788888888888887777667778888888888888887
Q ss_pred CCCCCCcccCCCCCCcEEEccCCCcccc-chhhhccCCCcEeecccCcCCCcCC
Q 012324 369 NLQRLPECLGQLSSPIILNLAKTNIERI-PESIIQLFVLRYLLLSYSERFQSLP 421 (466)
Q Consensus 369 ~~~~~p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~p 421 (466)
+.+..|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|++.+..+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 7777777788888888888888888844 6677888888888888887766544
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=1.3e-14 Score=133.13 Aligned_cols=152 Identities=20% Similarity=0.167 Sum_probs=127.4
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCee
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYL 338 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L 338 (466)
.+..+++|++|++++|.+ ..++ .+..+++|++|++++|.+.+..+-....+++.|++++|.++.+|.... ++|++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred chhhcCcCcEEECcCCCc-ccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 467889999999999954 4566 588999999999999987776553444688999999999998876433 899999
Q ss_pred eccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCC
Q 012324 339 NLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQ 418 (466)
Q Consensus 339 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 418 (466)
++++|.+.+ ++ .+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|++..
T Consensus 112 ~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 112 FLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred EccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 999987544 44 58999999999999987765 44 788999999999999999987 678999999999999998665
Q ss_pred c
Q 012324 419 S 419 (466)
Q Consensus 419 ~ 419 (466)
.
T Consensus 187 ~ 187 (263)
T 1xeu_A 187 E 187 (263)
T ss_dssp C
T ss_pred C
Confidence 4
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=4.3e-14 Score=125.96 Aligned_cols=151 Identities=18% Similarity=0.110 Sum_probs=126.7
Q ss_pred cCEEecCCCCCCCccCCCCCCcccEEeecCccCcccCh--hhhccCCCCeeeccccccccccccccCCCCCCCEEEecCC
Q 012324 290 LTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPS--SIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGC 367 (466)
Q Consensus 290 L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 367 (466)
-+.+++++|.+ ..+|..+...++.|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 13 ~~~l~~s~n~l-~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKL-NKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCC-SSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCc-ccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 35899998775 45788777888999999999998743 4899999999999999877666668999999999999999
Q ss_pred CCCCCCCcccCCCCCCcEEEccCCCcccc-chhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccC
Q 012324 368 SNLQRLPECLGQLSSPIILNLAKTNIERI-PESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 368 ~~~~~~p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
.+.+..|..|..+++|+.|++++|.++.+ |..+.++++|++|++++|.+.+..|..+. ++++|+.+....+.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD---TLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT---TCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc---CCCCCCEEEecCcCCc
Confidence 98888788899999999999999999966 66899999999999999998776676654 5566666666555554
No 95
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=148.35 Aligned_cols=163 Identities=23% Similarity=0.256 Sum_probs=141.6
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCC---CCCcccEEeecCccCcc-cChhhhccCC
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI---SSGNVCWLFLRGTAIEE-LPSSIDRLRR 334 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~l~~~~i~~-lp~~l~~l~~ 334 (466)
.+..+++|++|++++|.+.+. |..+..+++|++|++++|.+.+..|.. ...++++|++++|.+.. .|..+..+++
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred cccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence 456789999999999965554 444889999999999999987766632 33578999999999985 5667899999
Q ss_pred CCeeeccccccc-cccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecc
Q 012324 335 LGYLNLSDCKRL-KSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLS 412 (466)
Q Consensus 335 L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~ 412 (466)
|++|++++|.+. +.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|+++.+|. .+.++++|+.|+++
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence 999999999876 5789899999999999999999998889999999999999999999997765 68899999999999
Q ss_pred cCcCCCcCCC
Q 012324 413 YSERFQSLPK 422 (466)
Q Consensus 413 ~~~~~~~~p~ 422 (466)
+|++.+..|.
T Consensus 527 ~N~~~~~~~~ 536 (570)
T 2z63_A 527 TNPWDCSCPR 536 (570)
T ss_dssp SSCBCCCTTT
T ss_pred CCcccCCCcc
Confidence 9999887775
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=2.3e-14 Score=153.36 Aligned_cols=170 Identities=20% Similarity=0.152 Sum_probs=144.1
Q ss_pred CCCCCCCCCCCcEEEcCCCCCCccc-CcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcc-cChh--h
Q 012324 256 NPMLMPRLNNLVILNLRSGKSLKSL-PSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEE-LPSS--I 329 (466)
Q Consensus 256 ~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~-lp~~--l 329 (466)
.+..|.++++|++|++++|...+.+ |..+.++++|++|++++|.+.+..|..+. .+|++|++++|.+.. +|.. +
T Consensus 40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 3456899999999999999777777 77899999999999999998887776654 588999999999985 5554 8
Q ss_pred hccCCCCeeeccccccccccc-cccCCCCCCCEEEecCCCCCCCCCcccCCC--CCCcEEEccCCCcc-ccchhhhccCC
Q 012324 330 DRLRRLGYLNLSDCKRLKSLP-SSLCKLKSLKVLNLCGCSNLQRLPECLGQL--SSPIILNLAKTNIE-RIPESIIQLFV 405 (466)
Q Consensus 330 ~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l--~~L~~L~l~~~~l~-~lp~~l~~l~~ 405 (466)
+++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..|..+..+ ++|+.|+++.|.+. ..|..++.+++
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 199 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC
Confidence 999999999999998766554 578999999999999999988888888877 89999999999988 56666666655
Q ss_pred ------CcEeecccCcCCCcCCCCeE
Q 012324 406 ------LRYLLLSYSERFQSLPKPLF 425 (466)
Q Consensus 406 ------L~~L~l~~~~~~~~~p~~~~ 425 (466)
|+.|++++|.+.+..|..+.
T Consensus 200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 200 PFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp TTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred ccccCceeEEecCCCcCchhHHHHHH
Confidence 99999999988777776544
No 97
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=3.2e-16 Score=159.13 Aligned_cols=172 Identities=19% Similarity=0.116 Sum_probs=131.4
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCC-------------CCCccCCCC------------------
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCS-------------KLKRLPEIS------------------ 308 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~~~~~~------------------ 308 (466)
+..+++|+.|++++|. ...+|..+++|++|+.|++++|. ..+..|..+
T Consensus 345 ~~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 3678999999999985 45889999999999999987664 222222110
Q ss_pred ----------------CCcccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCC
Q 012324 309 ----------------SGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQR 372 (466)
Q Consensus 309 ----------------~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~ 372 (466)
...++.|++++|.++.+|. ++.+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 0135679999999998887 889999999999988755 888889999999999999987765
Q ss_pred CCcccCCCCCCcEEEccCCCcccc--chhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCcccc
Q 012324 373 LPECLGQLSSPIILNLAKTNIERI--PESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPF 436 (466)
Q Consensus 373 ~p~~l~~l~~L~~L~l~~~~l~~l--p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l 436 (466)
+| .++.+++|+.|++++|.++.+ |..++++++|+.|++++|++.+..|........+++|+.+
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 67 788899999999999999877 7889999999999999988766554332222334555443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=7.8e-14 Score=141.02 Aligned_cols=149 Identities=21% Similarity=0.229 Sum_probs=92.3
Q ss_pred CCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeecc
Q 012324 262 RLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLS 341 (466)
Q Consensus 262 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~ 341 (466)
.+++|++|++++|.+.+ +|. +.+ +|++|++++|.+.+ +|. ...+|+.|++++|.++.+|. .+++|++|+++
T Consensus 98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 168 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE-LPALLEYINADNNQLTMLPE---LPTSLEVLSVR 168 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC-cCccccEEeCCCCccCcCCC---cCCCcCEEECC
Confidence 34666666666665444 555 433 66666666666554 444 45566667776666666665 45667777777
Q ss_pred ccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCC-------cEEEccCCCccccchhhhccCCCcEeecccC
Q 012324 342 DCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSP-------IILNLAKTNIERIPESIIQLFVLRYLLLSYS 414 (466)
Q Consensus 342 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L-------~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~ 414 (466)
+|.+.+ +|. +. ++|+.|++++|.+. .+|. +.. +| +.|++++|.++.+|..+.++++|+.|++++|
T Consensus 169 ~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 169 NNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSS
T ss_pred CCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCC
Confidence 665433 555 44 66777777776544 5555 443 55 7777777777777776767777777777777
Q ss_pred cCCCcCCCCeEec
Q 012324 415 ERFQSLPKPLFLA 427 (466)
Q Consensus 415 ~~~~~~p~~~~~l 427 (466)
++.+.+|..+..+
T Consensus 241 ~l~~~~p~~l~~l 253 (571)
T 3cvr_A 241 PLSSRIRESLSQQ 253 (571)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHh
Confidence 7766666554433
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=1.2e-13 Score=123.98 Aligned_cols=150 Identities=21% Similarity=0.175 Sum_probs=124.1
Q ss_pred cCEEecCCCCCCCccCCCCCCcccEEeecCccCccc-ChhhhccCCCCeeeccccccccccc-cccCCCCCCCEEEecCC
Q 012324 290 LTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEEL-PSSIDRLRRLGYLNLSDCKRLKSLP-SSLCKLKSLKVLNLCGC 367 (466)
Q Consensus 290 L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~ 367 (466)
-+.++.+++. ...+|..+..++++|++++|.+..+ |..+..+++|++|++++|.+ +.+| ..+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~-l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCC-cCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCC
Confidence 4567887654 5678887889999999999999977 56789999999999999986 4555 55789999999999999
Q ss_pred CCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccC
Q 012324 368 SNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 368 ~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
.+....+..+..+++|+.|++++|.++.+|..+..+++|++|++++|.+. .+|... +.++++|+.+....+.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~--~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGA--FDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC-CCCTTT--TTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC-ccCHHH--HhCCCCCCEEEeeCCCcc
Confidence 88876667789999999999999999999999999999999999999865 455432 346677777777666654
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=4.2e-14 Score=142.98 Aligned_cols=155 Identities=20% Similarity=0.198 Sum_probs=125.8
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeecccc
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDC 343 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~ 343 (466)
++|++|++++|.+. .+| ..+++|++|++++|.+.+ +|. +..++++|++++|.++.+|. .+++|++|++++|
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNNQLTMLPE---LPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCCcCCCCCC---cCccccEEeCCCC
Confidence 78999999999665 677 468999999999998776 777 66699999999999999998 7899999999998
Q ss_pred ccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCC-------cEeecccCcC
Q 012324 344 KRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVL-------RYLLLSYSER 416 (466)
Q Consensus 344 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L-------~~L~l~~~~~ 416 (466)
.+.+ +|. .+++|++|++++|.+.+ +|. +. ++|+.|++++|.++.+|. +.. +| +.|++++|.+
T Consensus 151 ~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 151 QLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCC
T ss_pred ccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcc
Confidence 8554 776 57899999999987766 777 66 899999999999999988 654 67 9999999885
Q ss_pred CCcCCCCeEeccCCCCccccccCccc
Q 012324 417 FQSLPKPLFLARGCLALEPFLGIIED 442 (466)
Q Consensus 417 ~~~~p~~~~~l~~~~~L~~l~~~~~~ 442 (466)
. .+|..++. +++|+.+....+.
T Consensus 220 ~-~lp~~l~~---l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 220 T-HIPENILS---LDPTCTIILEDNP 241 (571)
T ss_dssp C-CCCGGGGG---SCTTEEEECCSSS
T ss_pred e-ecCHHHhc---CCCCCEEEeeCCc
Confidence 4 68887765 4455555444443
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=4.6e-14 Score=135.82 Aligned_cols=154 Identities=18% Similarity=0.113 Sum_probs=121.0
Q ss_pred CCCcEEEcCCCCCCcccCcccc-cCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccCh-hhhccCCCCeee
Q 012324 264 NNLVILNLRSGKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPS-SIDRLRRLGYLN 339 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~-~l~~l~~L~~L~ 339 (466)
+.++.|+|++|.+.+..+..+. ++++|++|++++|.+.+..+..+. .+|++|++++|.++.++. .+..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4688999999977766666666 899999999999887766555433 578999999999998766 578899999999
Q ss_pred ccccccccccccccCCCCCCCEEEecCCCCCCCCCccc---CCCCCCcEEEccCCCccccch-hhhccCC--CcEeeccc
Q 012324 340 LSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECL---GQLSSPIILNLAKTNIERIPE-SIIQLFV--LRYLLLSY 413 (466)
Q Consensus 340 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l---~~l~~L~~L~l~~~~l~~lp~-~l~~l~~--L~~L~l~~ 413 (466)
+++|.+....|..+..+++|+.|++++|.+...-+..+ ..+++|+.|++++|.++.+|. .+..++. |+.|++++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 99988777777788899999999999977665333334 578999999999999998874 6777776 48889988
Q ss_pred CcCC
Q 012324 414 SERF 417 (466)
Q Consensus 414 ~~~~ 417 (466)
|++.
T Consensus 199 N~~~ 202 (361)
T 2xot_A 199 NPLE 202 (361)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 8653
No 102
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=9.2e-14 Score=121.04 Aligned_cols=127 Identities=23% Similarity=0.262 Sum_probs=108.7
Q ss_pred CEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCC
Q 012324 291 TKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNL 370 (466)
Q Consensus 291 ~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 370 (466)
++++++++. +..+|..+..++++|++++|.++.+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 466777655 3456666667788888888999999999999999999999999877666677999999999999999888
Q ss_pred CCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecccCcCCC
Q 012324 371 QRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSYSERFQ 418 (466)
Q Consensus 371 ~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~ 418 (466)
...|..|..+++|+.|++++|.++.+|. .+..+++|++|++++|++..
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8878889999999999999999998887 58889999999999998654
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.4e-14 Score=120.72 Aligned_cols=126 Identities=23% Similarity=0.183 Sum_probs=99.1
Q ss_pred CCCcEEEcCCCCCC-cccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeeccc
Q 012324 264 NNLVILNLRSGKSL-KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSD 342 (466)
Q Consensus 264 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~ 342 (466)
++|+.|++++|.+. +.+|..+..+++|++|++++|. ++.+ ..++.+++|++|++++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~-~~~~~l~~L~~L~Ls~ 73 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----------------------LTSI-ANLPKLNKLKKLELSD 73 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC----------------------CCCC-TTCCCCTTCCEEECCS
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC----------------------CCCc-hhhhcCCCCCEEECCC
Confidence 67888888888776 6788877888888888888854 3333 4567788888888888
Q ss_pred cccccccccccCCCCCCCEEEecCCCCCCC-CCcccCCCCCCcEEEccCCCccccch----hhhccCCCcEeecc
Q 012324 343 CKRLKSLPSSLCKLKSLKVLNLCGCSNLQR-LPECLGQLSSPIILNLAKTNIERIPE----SIIQLFVLRYLLLS 412 (466)
Q Consensus 343 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~l~~lp~----~l~~l~~L~~L~l~ 412 (466)
|.+.+.+|..++.+++|++|++++|.+.+. .|..++.+++|+.|++++|.++.+|. .+..+++|+.|+++
T Consensus 74 n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp SCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 887666777677788888888888776652 34778888999999999998887765 67888999998876
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=1.1e-13 Score=123.17 Aligned_cols=131 Identities=21% Similarity=0.194 Sum_probs=117.1
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccChh-hhccCCCCeeec
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPSS-IDRLRRLGYLNL 340 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~~-l~~l~~L~~L~l 340 (466)
++++.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+. .+|++|++++|.++.+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 6899999999977766666899999999999999998877676554 5889999999999999876 588999999999
Q ss_pred cccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc
Q 012324 341 SDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE 394 (466)
Q Consensus 341 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 394 (466)
++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999987777888999999999999999888877778999999999999999987
No 105
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=8.7e-14 Score=144.12 Aligned_cols=155 Identities=23% Similarity=0.188 Sum_probs=125.3
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccCh-hhhccCCCCeeec
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPS-SIDRLRRLGYLNL 340 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~-~l~~l~~L~~L~l 340 (466)
+++++|+|++|.+.+..+.+|.++++|++|++++|.+.+..|..+. .+|++|++++|+++.+|. .+.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4899999999977766667899999999999999987665554443 578999999999999886 4789999999999
Q ss_pred cccccccccccccCCCCCCCEEEecCCCCCC-CCCcccCCCCCCcEEEccCCCcccc-chhhhccCCCc----EeecccC
Q 012324 341 SDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQ-RLPECLGQLSSPIILNLAKTNIERI-PESIIQLFVLR----YLLLSYS 414 (466)
Q Consensus 341 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~----~L~l~~~ 414 (466)
++|.+.+..+..++++++|++|++++|.+.. ..|..++.+++|+.|++++|.++.+ |..+..+++++ .++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9988655545568999999999999988754 5688889999999999999999965 44666665544 5777777
Q ss_pred cCCC
Q 012324 415 ERFQ 418 (466)
Q Consensus 415 ~~~~ 418 (466)
.+..
T Consensus 212 ~l~~ 215 (635)
T 4g8a_A 212 PMNF 215 (635)
T ss_dssp CCCE
T ss_pred cccc
Confidence 6443
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=2.8e-13 Score=130.33 Aligned_cols=151 Identities=23% Similarity=0.232 Sum_probs=125.6
Q ss_pred cEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC---CCcccEEeecCccCcccCh-hhhccCCCCeeeccc
Q 012324 267 VILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNVCWLFLRGTAIEELPS-SIDRLRRLGYLNLSD 342 (466)
Q Consensus 267 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~l~~~~i~~lp~-~l~~l~~L~~L~l~~ 342 (466)
+.++++++. ...+|..+ .+.+++|++++|.+.+..+..+ ..+|++|++++|+++.++. .+.++++|++|++++
T Consensus 21 ~~l~c~~~~-l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSC-CSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCC-cCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888874 45577654 3568999999998777666543 3678999999999998875 689999999999999
Q ss_pred cccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhh----hccCCCcEeecccCcCCC
Q 012324 343 CKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESI----IQLFVLRYLLLSYSERFQ 418 (466)
Q Consensus 343 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l----~~l~~L~~L~l~~~~~~~ 418 (466)
|.+....+..+..+++|++|++++|.+....|..|..+++|+.|++++|.++.+|..+ ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 9866655567899999999999999988888889999999999999999999998765 67999999999999855
Q ss_pred cCC
Q 012324 419 SLP 421 (466)
Q Consensus 419 ~~p 421 (466)
.+|
T Consensus 177 ~l~ 179 (361)
T 2xot_A 177 KLP 179 (361)
T ss_dssp CCC
T ss_pred ccC
Confidence 455
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=3.4e-14 Score=130.27 Aligned_cols=165 Identities=18% Similarity=0.060 Sum_probs=127.9
Q ss_pred CCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCC-CCCCcccEEeecCccCcccChhhhccCCCCeeecc
Q 012324 263 LNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE-ISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLS 341 (466)
Q Consensus 263 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~ 341 (466)
+.++..+++.++.+.+ ++ .+..+++|++|++++|.+.. ++. ....++++|++++|.++.+|. +..+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-chHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 4456666676764443 44 47899999999999997654 443 334688999999999999887 9999999999999
Q ss_pred ccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCCCcCC
Q 012324 342 DCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERFQSLP 421 (466)
Q Consensus 342 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p 421 (466)
+|.+. .+|. +.. ++|++|++++|.+.+ ++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+.
T Consensus 94 ~N~l~-~l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 94 RNRLK-NLNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SSCCS-CCTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CCccC-CcCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--
Confidence 98754 4554 334 999999999987765 44 6999999999999999999886 689999999999999986654
Q ss_pred CCeEeccCCCCccccccCccc
Q 012324 422 KPLFLARGCLALEPFLGIIED 442 (466)
Q Consensus 422 ~~~~~l~~~~~L~~l~~~~~~ 442 (466)
. .+.++++|+.+....+.
T Consensus 166 ~---~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 G---GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp T---TSTTCCCCCEEEEEEEE
T ss_pred H---HhccCCCCCEEeCCCCc
Confidence 2 24456666655554443
No 108
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.49 E-value=2.8e-14 Score=141.35 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=90.5
Q ss_pred HHhhhhhcccCCCCCCCCCCCCCC-------------cEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC
Q 012324 243 IHTACNKLIAKTPNPMLMPRLNNL-------------VILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS 309 (466)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 309 (466)
+.+..+...+.. |..++++++| +.|++++|.+.+ +|. -.++|++|++++|.+.+ +|.. .
T Consensus 39 L~l~~n~~~~~~--p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~-~ 110 (454)
T 1jl5_A 39 YYNAWSEWERNA--PPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL-P 110 (454)
T ss_dssp HHHHHHHHHHTS--CTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC-C
T ss_pred hhccCCcccccC--CcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc-c
Confidence 344444444433 3456666654 889998886443 554 24688999999888766 5543 2
Q ss_pred CcccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEcc
Q 012324 310 GNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLA 389 (466)
Q Consensus 310 ~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 389 (466)
.++++|++++|.++.+|.. .++|++|++++|.+.+ +| .++++++|++|++++|.+.+ +|..+ .+|+.|+++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECC
T ss_pred CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECc
Confidence 5566666666666655432 1466666666665443 55 36666666666666655443 44322 355555555
Q ss_pred CCCccccchhhhccCCCcEeecccCcC
Q 012324 390 KTNIERIPESIIQLFVLRYLLLSYSER 416 (466)
Q Consensus 390 ~~~l~~lp~~l~~l~~L~~L~l~~~~~ 416 (466)
+|.++.+| .++++++|++|++++|.+
T Consensus 182 ~n~l~~l~-~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 182 NNQLEELP-ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred CCcCCcCc-cccCCCCCCEEECCCCcC
Confidence 55555554 355555555555555543
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=2.2e-15 Score=146.58 Aligned_cols=181 Identities=15% Similarity=0.021 Sum_probs=109.2
Q ss_pred CCCCCCcEEEcCCCCCCc----ccCcccccCcccCEEecCCCCCCCccCCCCC---------------CcccEEeecCcc
Q 012324 261 PRLNNLVILNLRSGKSLK----SLPSGIFNLEFLTKLDLSGCSKLKRLPEISS---------------GNVCWLFLRGTA 321 (466)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---------------~~l~~L~l~~~~ 321 (466)
..+++|++|++++|.+.. .+|..+..+++|++|++++|.+....+..+. ..+++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 556777777777776655 3566666777777777777765432221111 466777777777
Q ss_pred Cc--ccC---hhhhccCCCCeeecccccccc-----ccccccCCCCCCCEEEecCCCCC----CCCCcccCCCCCCcEEE
Q 012324 322 IE--ELP---SSIDRLRRLGYLNLSDCKRLK-----SLPSSLCKLKSLKVLNLCGCSNL----QRLPECLGQLSSPIILN 387 (466)
Q Consensus 322 i~--~lp---~~l~~l~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~----~~~p~~l~~l~~L~~L~ 387 (466)
++ .+| ..+..+++|++|++++|.+.. ..|..+..+++|++|++++|.+. ..+|..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 65 333 355667777777777766442 23335666777777777776653 45566667777777777
Q ss_pred ccCCCccc-----cchhhhc--cCCCcEeecccCcCCC----cCCCCeEeccCCCCccccccCcccc
Q 012324 388 LAKTNIER-----IPESIIQ--LFVLRYLLLSYSERFQ----SLPKPLFLARGCLALEPFLGIIEDT 443 (466)
Q Consensus 388 l~~~~l~~-----lp~~l~~--l~~L~~L~l~~~~~~~----~~p~~~~~l~~~~~L~~l~~~~~~~ 443 (466)
+++|.++. +|..+.. +++|++|++++|.+.. .+|..+. .+|++|+.+....+.+
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~--~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID--EKMPDLLFLELNGNRF 315 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH--HHCTTCCEEECTTSBS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH--hcCCCceEEEccCCcC
Confidence 77777662 3455533 6777777777776554 2544331 2345555555444443
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=6.5e-14 Score=119.20 Aligned_cols=136 Identities=23% Similarity=0.193 Sum_probs=108.1
Q ss_pred CcccEEeecCccCc--ccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEE
Q 012324 310 GNVCWLFLRGTAIE--ELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILN 387 (466)
Q Consensus 310 ~~l~~L~l~~~~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 387 (466)
..++.|++++|.+. .+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34555555557777 7888889999999999999985544 6789999999999999998887888888899999999
Q ss_pred ccCCCccccc--hhhhccCCCcEeecccCcCCCcCCC-CeEeccCCCCccccccCccccCCCCC
Q 012324 388 LAKTNIERIP--ESIIQLFVLRYLLLSYSERFQSLPK-PLFLARGCLALEPFLGIIEDTQRIPH 448 (466)
Q Consensus 388 l~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~~~~L~~l~~~~~~~~~~~~ 448 (466)
+++|.++.+| ..+..+++|++|++++|++.+ +|. ....+.++++|+.+....+....++.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 9999999876 689999999999999998664 443 11234577788877776665555543
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=2.4e-13 Score=130.17 Aligned_cols=157 Identities=16% Similarity=0.080 Sum_probs=94.7
Q ss_pred CCCcEEEcCCCCCCcccC-cccccCcccCEEecCCCCCCCccCCCCCC---cc-cEEeecCccCcccCh-hhhccCCCCe
Q 012324 264 NNLVILNLRSGKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLPEISSG---NV-CWLFLRGTAIEELPS-SIDRLRRLGY 337 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---~l-~~L~l~~~~i~~lp~-~l~~l~~L~~ 337 (466)
+++++|+|++|.+. .+| ..|.++++|++|+|++|.+.+.+|...+. .+ +.+.+.+|++..+++ .+..+++|++
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 57788888887544 444 45777888888888888777766654432 22 456666677777643 4677778888
Q ss_pred eeccccccccccccccCCCCC--------------------------CCEEEecCCCCCCCCCcccCCCCCCcEEEcc-C
Q 012324 338 LNLSDCKRLKSLPSSLCKLKS--------------------------LKVLNLCGCSNLQRLPECLGQLSSPIILNLA-K 390 (466)
Q Consensus 338 L~l~~~~~~~~~p~~~~~l~~--------------------------L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~-~ 390 (466)
|++++|.+....+..+....+ ++.|++++|.+. .+|.......+|+.+++. +
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccC
Confidence 877776643322222223333 445555554433 334333344566666665 3
Q ss_pred CCccccch-hhhccCCCcEeecccCcCCCcCCCC
Q 012324 391 TNIERIPE-SIIQLFVLRYLLLSYSERFQSLPKP 423 (466)
Q Consensus 391 ~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~ 423 (466)
|.++.+|. .|.++++|+.|++++|. +..+|..
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~ 220 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTR-IHSLPSY 220 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS
T ss_pred CcccCCCHHHhccCcccchhhcCCCC-cCccChh
Confidence 55666665 45677777777777776 4455553
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.45 E-value=1.4e-12 Score=129.11 Aligned_cols=140 Identities=22% Similarity=0.225 Sum_probs=93.4
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeecccc
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDC 343 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~ 343 (466)
++|++|++++|.+.+ +| .++++++|++|++++|.+.+ +|.. ...+++|++++|.++.+| .++.+++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~-~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL-PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC-cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 578888888776554 66 47788888888888877554 4433 247788888888777776 5777778888887777
Q ss_pred ccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccchhhhccCCCcEeecccCcCC
Q 012324 344 KRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPESIIQLFVLRYLLLSYSERF 417 (466)
Q Consensus 344 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 417 (466)
.+.+ +|.. .++|++|++++|.+. .+| .++.+++|+.|++++|.++.+|.. +++|++|++++|.+.
T Consensus 206 ~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 206 SLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCS
T ss_pred cCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCccc
Confidence 6443 4432 246777777776554 566 366777777777777777666542 355666666665543
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=4.8e-14 Score=134.30 Aligned_cols=155 Identities=19% Similarity=0.161 Sum_probs=126.3
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCC-CCC-ccCCC--CCCcccEEeecCc-cCcc--cChhhhcc
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCS-KLK-RLPEI--SSGNVCWLFLRGT-AIEE--LPSSIDRL 332 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~--~~~~l~~L~l~~~-~i~~--lp~~l~~l 332 (466)
+..+++|++|++++|.+.+..+..+..+++|++|++++|. +.+ .++.. ...++++|++++| .++. ++..+..+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 5678999999999998877888888899999999999994 443 24432 3467899999999 8884 67788999
Q ss_pred C-CCCeeeccccc--cc-cccccccCCCCCCCEEEecCCC-CCCCCCcccCCCCCCcEEEccCCC-cc-ccchhhhccCC
Q 012324 333 R-RLGYLNLSDCK--RL-KSLPSSLCKLKSLKVLNLCGCS-NLQRLPECLGQLSSPIILNLAKTN-IE-RIPESIIQLFV 405 (466)
Q Consensus 333 ~-~L~~L~l~~~~--~~-~~~p~~~~~l~~L~~L~l~~~~-~~~~~p~~l~~l~~L~~L~l~~~~-l~-~lp~~l~~l~~ 405 (466)
+ +|++|++++|. +. ..+|..+.++++|++|++++|. +....+..+.++++|+.|++++|. +. .....+.++++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 9 99999999984 33 4566777889999999999998 566778889999999999999985 33 22235788999
Q ss_pred CcEeecccC
Q 012324 406 LRYLLLSYS 414 (466)
Q Consensus 406 L~~L~l~~~ 414 (466)
|++|++++|
T Consensus 274 L~~L~l~~~ 282 (336)
T 2ast_B 274 LKTLQVFGI 282 (336)
T ss_dssp CCEEECTTS
T ss_pred CCEEeccCc
Confidence 999999988
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=1.4e-13 Score=144.02 Aligned_cols=143 Identities=22% Similarity=0.258 Sum_probs=114.4
Q ss_pred ccCcccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCC
Q 012324 279 SLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKL 356 (466)
Q Consensus 279 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l 356 (466)
..+..+..+++|+.|+|++|.+. .+|... ...|++|+|++|.++.+|..++++++|++|+|++|.+. .+|..++.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 45677889999999999999876 566433 35789999999999999999999999999999999865 889999999
Q ss_pred CCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc-ccchhhhccC-CCcEeecccCcCCCcCCCCe
Q 012324 357 KSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE-RIPESIIQLF-VLRYLLLSYSERFQSLPKPL 424 (466)
Q Consensus 357 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~-~L~~L~l~~~~~~~~~p~~~ 424 (466)
++|++|++++|.+ +.+|..|+.+++|+.|+|++|.++ .+|..+..+. .+..+++++|.+.+.+|..+
T Consensus 293 ~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 293 FQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp TTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred CCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 9999999999766 488989999999999999999999 5566665442 22347899999999999864
No 115
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=1.5e-12 Score=111.68 Aligned_cols=130 Identities=21% Similarity=0.231 Sum_probs=93.0
Q ss_pred CEEecCCCCCCCccCCCCCCcccEEeecCccCcccChh-hhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCC
Q 012324 291 TKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSS-IDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSN 369 (466)
Q Consensus 291 ~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 369 (466)
+.++++++. ...+|......++.|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 10 ~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 445555543 2334444445666666666777766654 57888888888888875544445567888888888888877
Q ss_pred CCCCCcccCCCCCCcEEEccCCCccccchh-hhccCCCcEeecccCcCCCcCC
Q 012324 370 LQRLPECLGQLSSPIILNLAKTNIERIPES-IIQLFVLRYLLLSYSERFQSLP 421 (466)
Q Consensus 370 ~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~p 421 (466)
.+..+..+..+++|+.|++++|.++.+|.. +..+++|++|++++|++.+..|
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 766666678888888888888888877764 4778888888888888766544
No 116
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.42 E-value=1.5e-12 Score=134.75 Aligned_cols=183 Identities=21% Similarity=0.152 Sum_probs=114.2
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC---CcccEEeecCccCccc-ChhhhccCCC
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS---GNVCWLFLRGTAIEEL-PSSIDRLRRL 335 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~l~~~~i~~l-p~~l~~l~~L 335 (466)
+..+.+|+.+++..+.. ..++..+..+++|+.+++..+......+...+ ..++.++++.|.+... |..+..+++|
T Consensus 393 ~~~~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp HHSCSCCCEEECCSCSE-EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhhhhhhhhhhcccccc-ccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 34556777777776643 33444566777777777777665555443322 3457777777777644 3345667777
Q ss_pred Ceeecccccccc-ccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeeccc
Q 012324 336 GYLNLSDCKRLK-SLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSY 413 (466)
Q Consensus 336 ~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~ 413 (466)
++|++++|.... ..|..+..+++|++|++++|.+.+..|..|..+++|+.|++++|+++.++. .+.++++|+.|++++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 777777765433 345566777777777777777666666777777777777777777776543 566777777777777
Q ss_pred CcCCCcCCCCeEeccCCCCccccccCccccCC
Q 012324 414 SERFQSLPKPLFLARGCLALEPFLGIIEDTQR 445 (466)
Q Consensus 414 ~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~~ 445 (466)
|.+.+..|..+..+ .++|+.+....+++..
T Consensus 552 N~l~~~~~~~l~~l--~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 552 NHIMTSKKQELQHF--PSSLAFLNLTQNDFAC 581 (635)
T ss_dssp SCCCBCCSSCTTCC--CTTCCEEECTTCCBCC
T ss_pred CcCCCCCHHHHHhh--hCcCCEEEeeCCCCcc
Confidence 77666555544322 1345555555555543
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=1.7e-13 Score=143.39 Aligned_cols=149 Identities=23% Similarity=0.285 Sum_probs=115.4
Q ss_pred CCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccChhhhccCC
Q 012324 257 PMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPSSIDRLRR 334 (466)
Q Consensus 257 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~~l~~l~~ 334 (466)
+..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.+. .+|..+. .+|++|+|++|.++.+|..++++++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 456888999999999999655 78888889999999999999877 7776544 5789999999999999999999999
Q ss_pred CCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCC-CcEEEccCCCcc-ccchhhhccCCCcEeecc
Q 012324 335 LGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSS-PIILNLAKTNIE-RIPESIIQLFVLRYLLLS 412 (466)
Q Consensus 335 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~ 412 (466)
|++|++++|.+ +.+|..++.+++|++|++++|.+.+.+|..+..+.. +..+++++|.++ .+|. .|+.|+++
T Consensus 295 L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~ 367 (727)
T 4b8c_D 295 LKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEIN 367 (727)
T ss_dssp CSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-------
T ss_pred CCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEee
Confidence 99999999874 688988999999999999999999988887765432 234678888887 5554 45666666
Q ss_pred cC
Q 012324 413 YS 414 (466)
Q Consensus 413 ~~ 414 (466)
.|
T Consensus 368 ~n 369 (727)
T 4b8c_D 368 TD 369 (727)
T ss_dssp --
T ss_pred cc
Confidence 66
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=4.5e-13 Score=114.93 Aligned_cols=130 Identities=21% Similarity=0.153 Sum_probs=91.9
Q ss_pred CCCCCCCcEEEcCCCCCCcccCcccccCc-ccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCee
Q 012324 260 MPRLNNLVILNLRSGKSLKSLPSGIFNLE-FLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYL 338 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L 338 (466)
+.++++|+.|++++|.+. .+|. +..+. +|++|++++| .++.+ ..++.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N----------------------~l~~~-~~l~~l~~L~~L 69 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDN----------------------EIRKL-DGFPLLRRLKTL 69 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSS----------------------CCCEE-CCCCCCSSCCEE
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCC----------------------CCCcc-cccccCCCCCEE
Confidence 455667777777777544 3443 33433 6777776664 45544 456777888888
Q ss_pred ecccccccccccccc-CCCCCCCEEEecCCCCCCCCCc--ccCCCCCCcEEEccCCCccccchh----hhccCCCcEeec
Q 012324 339 NLSDCKRLKSLPSSL-CKLKSLKVLNLCGCSNLQRLPE--CLGQLSSPIILNLAKTNIERIPES----IIQLFVLRYLLL 411 (466)
Q Consensus 339 ~l~~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~l~~lp~~----l~~l~~L~~L~l 411 (466)
++++|.+. .+|+.+ ..+++|++|++++|.+ +.+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++
T Consensus 70 ~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 70 LVNNNRIC-RIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp ECCSSCCC-EECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ECCCCccc-ccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 88887754 445444 7788888888888765 45665 778888899999998888888775 788899999998
Q ss_pred ccCcC
Q 012324 412 SYSER 416 (466)
Q Consensus 412 ~~~~~ 416 (466)
+.|..
T Consensus 148 ~~n~~ 152 (176)
T 1a9n_A 148 QKVKL 152 (176)
T ss_dssp EECCH
T ss_pred CcCCH
Confidence 88753
No 119
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=2.8e-12 Score=131.27 Aligned_cols=76 Identities=24% Similarity=0.274 Sum_probs=47.2
Q ss_pred CCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeecc
Q 012324 262 RLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLS 341 (466)
Q Consensus 262 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~ 341 (466)
.+++|++|++++|.+ ..+|. .+++|++|++++|.+.+ +|. ...+++.|++++|.++.+|.. +++|++|+++
T Consensus 79 ~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~l~~-l~~-~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 79 LPPELRTLEVSGNQL-TSLPV---LPPGLLELSIFSNPLTH-LPA-LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVS 149 (622)
T ss_dssp CCTTCCEEEECSCCC-SCCCC---CCTTCCEEEECSCCCCC-CCC-CCTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred cCCCCCEEEcCCCcC-CcCCC---CCCCCCEEECcCCcCCC-CCC-CCCCcCEEECCCCCCCcCCCC---CCCCCEEECc
Confidence 346677777766643 34554 55667777777665443 333 445667777777777776653 3677777777
Q ss_pred ccccc
Q 012324 342 DCKRL 346 (466)
Q Consensus 342 ~~~~~ 346 (466)
+|.+.
T Consensus 150 ~N~l~ 154 (622)
T 3g06_A 150 DNQLA 154 (622)
T ss_dssp SSCCS
T ss_pred CCcCC
Confidence 77543
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=1.2e-12 Score=113.81 Aligned_cols=125 Identities=20% Similarity=0.183 Sum_probs=103.1
Q ss_pred cEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCC---CCCcccEEeecCccCccc-ChhhhccCCCCeeeccc
Q 012324 267 VILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI---SSGNVCWLFLRGTAIEEL-PSSIDRLRRLGYLNLSD 342 (466)
Q Consensus 267 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~l~~~~i~~l-p~~l~~l~~L~~L~l~~ 342 (466)
++++++++.+ +.+|..+.. +|++|++++|.+.+..+.. ...++++|++++|.++.+ |..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6788877744 667765533 7888888888766555532 235778888888999877 66889999999999999
Q ss_pred cccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc
Q 012324 343 CKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE 394 (466)
Q Consensus 343 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 394 (466)
|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9987777777899999999999999999888999999999999999999988
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.40 E-value=3.5e-12 Score=130.53 Aligned_cols=78 Identities=24% Similarity=0.211 Sum_probs=50.0
Q ss_pred CCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhh---cc------
Q 012324 262 RLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSID---RL------ 332 (466)
Q Consensus 262 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~---~l------ 332 (466)
.+++|++|++++|.+. .+|. .+++|+.|++++|.+.. +|.. ..+|++|++++|.++.+|..+. .+
T Consensus 99 ~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~-l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 99 LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL-PPGLQELSVSDNQLASLPALPSELCKLWAYNNQ 172 (622)
T ss_dssp CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC-CCCCCEEECcCCcCCCcCCccCCCCEEECCCCC
Confidence 6688999999888544 3554 56777888888776544 4443 2566777777777766554222 22
Q ss_pred --------CCCCeeecccccc
Q 012324 333 --------RRLGYLNLSDCKR 345 (466)
Q Consensus 333 --------~~L~~L~l~~~~~ 345 (466)
++|++|++++|.+
T Consensus 173 l~~l~~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 173 LTSLPMLPSGLQELSVSDNQL 193 (622)
T ss_dssp CSCCCCCCTTCCEEECCSSCC
T ss_pred CCCCcccCCCCcEEECCCCCC
Confidence 6666677766653
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=4.7e-14 Score=137.11 Aligned_cols=162 Identities=17% Similarity=0.096 Sum_probs=130.8
Q ss_pred CCCCCCCcEEEcCCCCCCccc----CcccccC---------cccCEEecCCCCCC-CccCC---C--CCCcccEEeecCc
Q 012324 260 MPRLNNLVILNLRSGKSLKSL----PSGIFNL---------EFLTKLDLSGCSKL-KRLPE---I--SSGNVCWLFLRGT 320 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~~~~~~~----~~~l~~l---------~~L~~L~l~~~~~~-~~~~~---~--~~~~l~~L~l~~~ 320 (466)
+..+++|++|++++|.+.... +..+..+ ++|++|++++|.+. ..+|. . ...+++.|++++|
T Consensus 118 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197 (386)
T ss_dssp HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence 567799999999999775433 3334444 89999999999876 33442 1 2358899999999
Q ss_pred cCc------ccChhhhccCCCCeeeccccccc----cccccccCCCCCCCEEEecCCCCCCC----CCccc--CCCCCCc
Q 012324 321 AIE------ELPSSIDRLRRLGYLNLSDCKRL----KSLPSSLCKLKSLKVLNLCGCSNLQR----LPECL--GQLSSPI 384 (466)
Q Consensus 321 ~i~------~lp~~l~~l~~L~~L~l~~~~~~----~~~p~~~~~l~~L~~L~l~~~~~~~~----~p~~l--~~l~~L~ 384 (466)
.++ -.|..+..+++|++|++++|.+. ..+|..+..+++|++|++++|.+... +|..+ +.+++|+
T Consensus 198 ~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~ 277 (386)
T 2ca6_A 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277 (386)
T ss_dssp CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence 998 23447889999999999999874 67788889999999999999987765 56666 4499999
Q ss_pred EEEccCCCccc-----cchhh-hccCCCcEeecccCcCCCcCC
Q 012324 385 ILNLAKTNIER-----IPESI-IQLFVLRYLLLSYSERFQSLP 421 (466)
Q Consensus 385 ~L~l~~~~l~~-----lp~~l-~~l~~L~~L~l~~~~~~~~~p 421 (466)
.|++++|.++. +|..+ .++++|++|++++|++.+..|
T Consensus 278 ~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99999999996 88877 668999999999999876554
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=2.8e-13 Score=112.75 Aligned_cols=125 Identities=21% Similarity=0.116 Sum_probs=97.2
Q ss_pred cccEEeecCccCc--ccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEc
Q 012324 311 NVCWLFLRGTAIE--ELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNL 388 (466)
Q Consensus 311 ~l~~L~l~~~~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 388 (466)
.++.|++++|.++ .+|..++.+++|++|++++|.+.+. ..++.+++|++|++++|.+.+.+|..+..+++|+.|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3445555556676 7787788999999999999976554 66899999999999999988878888888999999999
Q ss_pred cCCCccccc--hhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccc
Q 012324 389 AKTNIERIP--ESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFL 437 (466)
Q Consensus 389 ~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~ 437 (466)
++|.++.+| ..++++++|++|++++|++.+..+-....+..+++|+.+.
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 999999765 7899999999999999986554331111233455555443
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=3.2e-12 Score=129.79 Aligned_cols=120 Identities=22% Similarity=0.137 Sum_probs=97.3
Q ss_pred ccCEEecCCCCCCCccCC-CCCCcccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCC
Q 012324 289 FLTKLDLSGCSKLKRLPE-ISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGC 367 (466)
Q Consensus 289 ~L~~L~l~~~~~~~~~~~-~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 367 (466)
.|++|++++|.+.+ +|. ....+|+.|++++|.++.+|..++.+++|++|++++|.+.+ +| .++.+++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCC-CcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence 46667777766544 443 11235677777778899999999999999999999998655 77 7999999999999999
Q ss_pred CCCCCC-CcccCCCCCCcEEEccCCCccccchhh----hccCCCcEeec
Q 012324 368 SNLQRL-PECLGQLSSPIILNLAKTNIERIPESI----IQLFVLRYLLL 411 (466)
Q Consensus 368 ~~~~~~-p~~l~~l~~L~~L~l~~~~l~~lp~~l----~~l~~L~~L~l 411 (466)
.+.+.. |..++.+++|+.|++++|.++.+|+.+ ..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888776 999999999999999999999777643 44899999864
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=6.7e-14 Score=134.73 Aligned_cols=158 Identities=16% Similarity=0.073 Sum_probs=85.1
Q ss_pred CCCC-CCcEEEcCCCCCCcccCcccccC-----cccCEEecCCCCCCCccCCC------CC-CcccEEeecCccCcccCh
Q 012324 261 PRLN-NLVILNLRSGKSLKSLPSGIFNL-----EFLTKLDLSGCSKLKRLPEI------SS-GNVCWLFLRGTAIEELPS 327 (466)
Q Consensus 261 ~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~------~~-~~l~~L~l~~~~i~~lp~ 327 (466)
..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+.. .. ..+++|++++|.++..+.
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 3445 66666666665555444444443 66666666666655443321 11 356666666666664443
Q ss_pred -hhh----c-cCCCCeeecccccccc----ccccccCCCC-CCCEEEecCCCCCCCCCcc----cCCC-CCCcEEEccCC
Q 012324 328 -SID----R-LRRLGYLNLSDCKRLK----SLPSSLCKLK-SLKVLNLCGCSNLQRLPEC----LGQL-SSPIILNLAKT 391 (466)
Q Consensus 328 -~l~----~-l~~L~~L~l~~~~~~~----~~p~~~~~l~-~L~~L~l~~~~~~~~~p~~----l~~l-~~L~~L~l~~~ 391 (466)
.+. . .++|++|++++|.+.. .++..+..++ +|++|++++|.+....+.. +..+ ++|+.|++++|
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 222 2 2466666666665443 2223334443 6666666666555444432 2333 46666666666
Q ss_pred Cccc-----cchhhhcc-CCCcEeecccCcCCC
Q 012324 392 NIER-----IPESIIQL-FVLRYLLLSYSERFQ 418 (466)
Q Consensus 392 ~l~~-----lp~~l~~l-~~L~~L~l~~~~~~~ 418 (466)
.++. ++..+..+ ++|++|++++|.+..
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 6664 45555543 366666666665433
No 126
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.2e-11 Score=105.19 Aligned_cols=100 Identities=20% Similarity=0.212 Sum_probs=46.9
Q ss_pred EeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc
Q 012324 315 LFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE 394 (466)
Q Consensus 315 L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 394 (466)
++++++.++.+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|+++
T Consensus 14 l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 14 VDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence 3333344444444331 44455555554443333444445555555555554444333333445555555555555555
Q ss_pred ccch-hhhccCCCcEeecccCcC
Q 012324 395 RIPE-SIIQLFVLRYLLLSYSER 416 (466)
Q Consensus 395 ~lp~-~l~~l~~L~~L~l~~~~~ 416 (466)
.+|. .+.++++|++|++++|++
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 92 SIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCB
T ss_pred EeCHHHhcCCCCCCEEEeCCCCC
Confidence 4443 244555555555555543
No 127
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.3e-11 Score=105.34 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=45.0
Q ss_pred EeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc
Q 012324 315 LFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE 394 (466)
Q Consensus 315 L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~ 394 (466)
++++++.++.+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++
T Consensus 17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 3333344444444332 44444444444433333444444555555555544443322223444555555555555555
Q ss_pred ccchh-hhccCCCcEeecccCc
Q 012324 395 RIPES-IIQLFVLRYLLLSYSE 415 (466)
Q Consensus 395 ~lp~~-l~~l~~L~~L~l~~~~ 415 (466)
.+|.. +..+++|++|++++|+
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSC
T ss_pred eeCHHHhccccCCCEEEeCCCC
Confidence 44442 4445555555555544
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=4.5e-14 Score=123.71 Aligned_cols=126 Identities=21% Similarity=0.087 Sum_probs=71.5
Q ss_pred CcccccCcccCEEecCCCCCCCccCCCCC--CcccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCC
Q 012324 281 PSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKS 358 (466)
Q Consensus 281 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 358 (466)
|..+..+++|++|++++|.+.+ +| .+. .++++|++++|.++.+|..+..+++|++|++++|.+.+ +| .+..+++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 3378888889999988876444 33 111 34566666666666666555555666666666655332 33 3555566
Q ss_pred CCEEEecCCCCCCCCC-cccCCCCCCcEEEccCCCccccch-----------hhhccCCCcEee
Q 012324 359 LKVLNLCGCSNLQRLP-ECLGQLSSPIILNLAKTNIERIPE-----------SIIQLFVLRYLL 410 (466)
Q Consensus 359 L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~lp~-----------~l~~l~~L~~L~ 410 (466)
|++|++++|.+....+ ..+..+++|+.|++++|.+...++ .+..+++|+.|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6666666654433211 245556666666666666553221 145566666555
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=5.3e-12 Score=108.15 Aligned_cols=122 Identities=16% Similarity=0.088 Sum_probs=91.4
Q ss_pred cEEeecCccCcccChhhhccC-CCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCC
Q 012324 313 CWLFLRGTAIEELPSSIDRLR-RLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKT 391 (466)
Q Consensus 313 ~~L~l~~~~i~~lp~~l~~l~-~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 391 (466)
+.|++++|.++.+|. +..+. +|++|++++|.+.+. ..++.+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 22 ~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 22 RELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp EEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred eEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC
Confidence 333333456666654 45554 999999999986554 56899999999999998877543444589999999999999
Q ss_pred Cccccch--hhhccCCCcEeecccCcCCCcCCCC-eEeccCCCCcccccc
Q 012324 392 NIERIPE--SIIQLFVLRYLLLSYSERFQSLPKP-LFLARGCLALEPFLG 438 (466)
Q Consensus 392 ~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~~~~L~~l~~ 438 (466)
.++.+|. .+..+++|++|++++|++. .+|.. ...+..+++|+.+..
T Consensus 99 ~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 99 SLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred cCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCC
Confidence 9998887 8899999999999999865 56653 112345566665554
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=2.5e-11 Score=105.58 Aligned_cols=126 Identities=18% Similarity=0.174 Sum_probs=105.1
Q ss_pred cEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCC
Q 012324 313 CWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTN 392 (466)
Q Consensus 313 ~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 392 (466)
++++++++.++.+|..+. ++|++|++++|.+ ..+|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 689999999999998664 6899999999874 5788889999999999999999888777889999999999999999
Q ss_pred ccccch-hhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccccCccccC
Q 012324 393 IERIPE-SIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFLGIIEDTQ 444 (466)
Q Consensus 393 l~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~~~~~~~ 444 (466)
++.++. .+..+++|++|++++|.+. .+|... +.++++|+.+....+.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~--~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGA--FNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTT--TTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC-eeChhh--hhcCccccEEEeCCCCee
Confidence 997765 6899999999999999865 455532 235666776666666554
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.26 E-value=2.9e-11 Score=115.60 Aligned_cols=172 Identities=20% Similarity=0.219 Sum_probs=112.2
Q ss_pred CCCCCCCCcEEEcCCCCCCcccC--------------------------cccccCcccCEEecCCCCCCCccCCCCCC--
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLP--------------------------SGIFNLEFLTKLDLSGCSKLKRLPEISSG-- 310 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~--------------------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-- 310 (466)
.|.++++|++|+|++|.+.+.+| ..+..+++|++|++++|.+....+.....
T Consensus 49 ~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 128 (350)
T 4ay9_X 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128 (350)
T ss_dssp SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS
T ss_pred HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccc
Confidence 45666666666666665444433 33444555555555555443332222222
Q ss_pred cccEEeecC-ccCcccChh-hhcc-CCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCc-ccCCCCCCcEE
Q 012324 311 NVCWLFLRG-TAIEELPSS-IDRL-RRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPE-CLGQLSSPIIL 386 (466)
Q Consensus 311 ~l~~L~l~~-~~i~~lp~~-l~~l-~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L 386 (466)
.+..|++.+ +++..+|.. +..+ ..+++|++++|. +..+|.......+|+.+++.+++..+.+|. .|..+++|+.|
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence 234455533 445555442 3333 357888888877 456777777788999999998888888885 57999999999
Q ss_pred EccCCCccccchhhhccCCCcEeecccCcCCCcCCCCeEeccCCCCccccc
Q 012324 387 NLAKTNIERIPESIIQLFVLRYLLLSYSERFQSLPKPLFLARGCLALEPFL 437 (466)
Q Consensus 387 ~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~ 437 (466)
++++|+++.+|.. .+.+|+.|.+.++..++.+|. +.++++|+.+.
T Consensus 208 dLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~----l~~l~~L~~l~ 252 (350)
T 4ay9_X 208 DISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT----LEKLVALMEAS 252 (350)
T ss_dssp ECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC----TTTCCSCCEEE
T ss_pred hcCCCCcCccChh--hhccchHhhhccCCCcCcCCC----chhCcChhhCc
Confidence 9999999999873 366777888777777888884 45566666544
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=1e-10 Score=100.19 Aligned_cols=129 Identities=22% Similarity=0.157 Sum_probs=93.2
Q ss_pred CcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC--CCcccEEeecCccCcccChh-hhccCCCCeeeccc
Q 012324 266 LVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNVCWLFLRGTAIEELPSS-IDRLRRLGYLNLSD 342 (466)
Q Consensus 266 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~l~~~~i~~lp~~-l~~l~~L~~L~l~~ 342 (466)
.+.++++++. ...+|..+ .++|+.|++++|.+.+..+..+ ..++++|++++|.++.+|.. +..+++|++|++++
T Consensus 9 ~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3556666653 33445333 3567777777776554333322 24667777777888877765 68999999999999
Q ss_pred cccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccc
Q 012324 343 CKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIP 397 (466)
Q Consensus 343 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp 397 (466)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 8866555555789999999999998877555555788999999999999988443
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=7.2e-13 Score=131.85 Aligned_cols=154 Identities=21% Similarity=0.126 Sum_probs=85.9
Q ss_pred CCCcEEEcCCCCCCcc----cCcccccCcccCEEecCCCCCCCcc-----CC--CCCCcccEEeecCccCcc-----cCh
Q 012324 264 NNLVILNLRSGKSLKS----LPSGIFNLEFLTKLDLSGCSKLKRL-----PE--ISSGNVCWLFLRGTAIEE-----LPS 327 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~-----~~--~~~~~l~~L~l~~~~i~~-----lp~ 327 (466)
++|++|++++|.+... ++..+..+++|++|++++|.+.... +. .....+++|++++|.++. ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 4677777777755542 4555666677777777776544321 11 123456777777776664 566
Q ss_pred hhhccCCCCeeeccccccccccccccC-----CCCCCCEEEecCCCCCCC----CCcccCCCCCCcEEEccCCCccc-cc
Q 012324 328 SIDRLRRLGYLNLSDCKRLKSLPSSLC-----KLKSLKVLNLCGCSNLQR----LPECLGQLSSPIILNLAKTNIER-IP 397 (466)
Q Consensus 328 ~l~~l~~L~~L~l~~~~~~~~~p~~~~-----~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l~~-lp 397 (466)
.+..+++|++|++++|.+....+..+. ..++|++|++++|.+... +|..+..+++|+.|++++|.++. .+
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 666667777777776654333222221 224666666666665443 34445555666666666666552 12
Q ss_pred hhhhc-----cCCCcEeecccCcCC
Q 012324 398 ESIIQ-----LFVLRYLLLSYSERF 417 (466)
Q Consensus 398 ~~l~~-----l~~L~~L~l~~~~~~ 417 (466)
..+.. .++|++|++++|.+.
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHHHcCCCCceEEEECCCCCCC
Confidence 22222 456666666666543
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.20 E-value=3.5e-12 Score=122.71 Aligned_cols=183 Identities=18% Similarity=0.050 Sum_probs=130.7
Q ss_pred CCCCCCcEEEcCCCCCCcccC----cccccCc-ccCEEecCCCCCCCccCCCC-------CCcccEEeecCccCcccCh-
Q 012324 261 PRLNNLVILNLRSGKSLKSLP----SGIFNLE-FLTKLDLSGCSKLKRLPEIS-------SGNVCWLFLRGTAIEELPS- 327 (466)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~-------~~~l~~L~l~~~~i~~lp~- 327 (466)
...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+ ...+++|++++|.++..+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 445679999999997665544 6677888 89999999998776654321 2678999999999986544
Q ss_pred h----hhcc-CCCCeeeccccccccccccc----cCC-CCCCCEEEecCCCCCCC----CCcccCCCC-CCcEEEccCCC
Q 012324 328 S----IDRL-RRLGYLNLSDCKRLKSLPSS----LCK-LKSLKVLNLCGCSNLQR----LPECLGQLS-SPIILNLAKTN 392 (466)
Q Consensus 328 ~----l~~l-~~L~~L~l~~~~~~~~~p~~----~~~-l~~L~~L~l~~~~~~~~----~p~~l~~l~-~L~~L~l~~~~ 392 (466)
. +..+ ++|++|++++|.+....+.. +.. .++|++|++++|.+... ++..+..++ +|+.|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 3 4444 89999999999876554443 334 36999999999887753 344456665 99999999999
Q ss_pred cccc-ch----hhhcc-CCCcEeecccCcCCCc----CCCCeEeccCCCCccccccCccccCC
Q 012324 393 IERI-PE----SIIQL-FVLRYLLLSYSERFQS----LPKPLFLARGCLALEPFLGIIEDTQR 445 (466)
Q Consensus 393 l~~l-p~----~l~~l-~~L~~L~l~~~~~~~~----~p~~~~~l~~~~~L~~l~~~~~~~~~ 445 (466)
++.. +. .+..+ ++|++|++++|.+... ++..+.. .+++|+.+....+.+..
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~--~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS--IPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH--SCTTCCEEECCSSCCCC
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc--CCCCceEEECcCCCCCc
Confidence 9843 33 34455 5999999999986542 2222221 13577777766665544
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=9.4e-14 Score=121.63 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=114.5
Q ss_pred ccCcccCEEecCCCCCCCccCC------CC--CCcccEEeecCccCcccChhhhccCCCCeeeccccccccccccccCCC
Q 012324 285 FNLEFLTKLDLSGCSKLKRLPE------IS--SGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLPSSLCKL 356 (466)
Q Consensus 285 ~~l~~L~~L~l~~~~~~~~~~~------~~--~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l 356 (466)
.....++.++++.+.+.+..|. .+ ..++++|++++|.++.+| .+..+++|++|++++|.+. .+|..+..+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 3445555566666655555443 22 257899999999999998 8999999999999998754 788777778
Q ss_pred CCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch--hhhccCCCcEeecccCcCCCcCCCC-------eEec
Q 012324 357 KSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE--SIIQLFVLRYLLLSYSERFQSLPKP-------LFLA 427 (466)
Q Consensus 357 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~-------~~~l 427 (466)
++|++|++++|.+.+ +| .+..+++|+.|++++|.++.++. .+..+++|++|++++|++.+..|.. ...+
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 999999999987665 55 68889999999999999997765 7889999999999999987766542 1123
Q ss_pred cCCCCccccc
Q 012324 428 RGCLALEPFL 437 (466)
Q Consensus 428 ~~~~~L~~l~ 437 (466)
..+++|+.+.
T Consensus 171 ~~l~~L~~Ld 180 (198)
T 1ds9_A 171 KRLPNLKKLD 180 (198)
T ss_dssp HHCSSCSEEC
T ss_pred HhCCCcEEEC
Confidence 4555666554
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=1.9e-10 Score=98.12 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=83.4
Q ss_pred CEEecCCCCCCCccCCCCCCcccEEeecCccCccc-ChhhhccCCCCeeecccccccccccc-ccCCCCCCCEEEecCCC
Q 012324 291 TKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEEL-PSSIDRLRRLGYLNLSDCKRLKSLPS-SLCKLKSLKVLNLCGCS 368 (466)
Q Consensus 291 ~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~ 368 (466)
+.+++++|.+ +.+|..+...+++|++++|.++.+ |..+.++++|++|++++|.+.+ +|. .+..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l-~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCC-SSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCC-CccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCc
Confidence 4566666543 455655556677777777888877 4568899999999999987554 554 46899999999999988
Q ss_pred CCCCCCcccCCCCCCcEEEccCCCccccchhhh
Q 012324 369 NLQRLPECLGQLSSPIILNLAKTNIERIPESII 401 (466)
Q Consensus 369 ~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~ 401 (466)
+.+..+..+..+++|+.|++++|.+...+..+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~ 125 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccccHH
Confidence 776555569999999999999999986665433
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.18 E-value=1.2e-12 Score=130.14 Aligned_cols=130 Identities=19% Similarity=0.089 Sum_probs=56.3
Q ss_pred CCCcEEEcCCCCCCcc----cCcccccCcccCEEecCCCCCCCccCCCC-------CCcccEEeecCccCcc-----cCh
Q 012324 264 NNLVILNLRSGKSLKS----LPSGIFNLEFLTKLDLSGCSKLKRLPEIS-------SGNVCWLFLRGTAIEE-----LPS 327 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-------~~~l~~L~l~~~~i~~-----lp~ 327 (466)
++|++|++++|.+.+. ++..+..+++|++|++++|.+....+..+ ...++.|++++|.++. ++.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 3455555555544332 23334445555555555554332221111 1244555555555543 344
Q ss_pred hhhccCCCCeeecccccccccc-----ccccCCCCCCCEEEecCCCCCCC----CCcccCCCCCCcEEEccCCCc
Q 012324 328 SIDRLRRLGYLNLSDCKRLKSL-----PSSLCKLKSLKVLNLCGCSNLQR----LPECLGQLSSPIILNLAKTNI 393 (466)
Q Consensus 328 ~l~~l~~L~~L~l~~~~~~~~~-----p~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l 393 (466)
.+..+++|++|++++|.+.... +.....+++|++|++++|.+... ++..+..+++|+.|++++|.+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 4445555555555554432211 11112344555555555443322 333334444444444444444
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.18 E-value=1.9e-10 Score=97.74 Aligned_cols=108 Identities=23% Similarity=0.184 Sum_probs=83.7
Q ss_pred cCEEecCCCCCCCccCCCCCCcccEEeecCccCccc-ChhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCC
Q 012324 290 LTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEEL-PSSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCS 368 (466)
Q Consensus 290 L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 368 (466)
.+.+++++|.+ ..+|..+...+++|++++|.++.+ |..+.++++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 11 ~~~l~~s~n~l-~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSL-ASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCC-SSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCc-CccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 45666666553 335555556677777777888877 5568899999999999998665444556899999999999988
Q ss_pred CCCCCCcccCCCCCCcEEEccCCCccccch
Q 012324 369 NLQRLPECLGQLSSPIILNLAKTNIERIPE 398 (466)
Q Consensus 369 ~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~ 398 (466)
+.+..+..+..+++|+.|++++|.+...+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 877666679999999999999999874443
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=7.1e-10 Score=105.82 Aligned_cols=100 Identities=19% Similarity=0.135 Sum_probs=51.8
Q ss_pred EecCCCCCCCccCCCCCC--cccEEeecC-ccCcccCh-hhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCC
Q 012324 293 LDLSGCSKLKRLPEISSG--NVCWLFLRG-TAIEELPS-SIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCS 368 (466)
Q Consensus 293 L~l~~~~~~~~~~~~~~~--~l~~L~l~~-~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 368 (466)
++.++++.+..+|. +.. +|+.|+|++ |.++.+|+ .++++++|++|+|++|.+.+..|..+.++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 45555422333454 332 356666654 56655553 35556666666666655444444455556666666666555
Q ss_pred CCCCCCcccCCCCCCcEEEccCCCcc
Q 012324 369 NLQRLPECLGQLSSPIILNLAKTNIE 394 (466)
Q Consensus 369 ~~~~~p~~l~~l~~L~~L~l~~~~l~ 394 (466)
+.+..+..+..++ |+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 4433333333333 666666665555
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.01 E-value=3.8e-11 Score=115.43 Aligned_cols=155 Identities=17% Similarity=0.046 Sum_probs=114.1
Q ss_pred CCCcEEEcCCCCCCcccCccccc-----CcccCEEecCCCCCCCccCCCCC---CcccEEeecCccCccc-----Chhh-
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFN-----LEFLTKLDLSGCSKLKRLPEISS---GNVCWLFLRGTAIEEL-----PSSI- 329 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~l~~~~i~~l-----p~~l- 329 (466)
++|+.|++++|.+...-...+.. .++|++|++++|.+.......+. .+++.|++++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 57899999999766543333322 37899999999987654333222 3679999999999733 2223
Q ss_pred hccCCCCeeecccccccc----ccccccCCCCCCCEEEecCCCCCCC----CCcccCCCCCCcEEEccCCCcc-----cc
Q 012324 330 DRLRRLGYLNLSDCKRLK----SLPSSLCKLKSLKVLNLCGCSNLQR----LPECLGQLSSPIILNLAKTNIE-----RI 396 (466)
Q Consensus 330 ~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l~-----~l 396 (466)
...++|++|++++|.+.. .++..+..+++|++|++++|.+... ++..+...++|+.|++++|.++ .+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 246889999999997643 2445567889999999999886542 3566778889999999999998 24
Q ss_pred chhhhccCCCcEeecccCcCCC
Q 012324 397 PESIIQLFVLRYLLLSYSERFQ 418 (466)
Q Consensus 397 p~~l~~l~~L~~L~l~~~~~~~ 418 (466)
+..+...++|++|++++|.+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 4556678999999999998543
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.97 E-value=1.3e-10 Score=119.40 Aligned_cols=153 Identities=16% Similarity=0.073 Sum_probs=99.2
Q ss_pred CCCCCcEEEcCCCCCC---cccCcccc------------cCcccCEEecCCCCCCCccCCCC---C-CcccEEeecCcc-
Q 012324 262 RLNNLVILNLRSGKSL---KSLPSGIF------------NLEFLTKLDLSGCSKLKRLPEIS---S-GNVCWLFLRGTA- 321 (466)
Q Consensus 262 ~l~~L~~L~l~~~~~~---~~~~~~l~------------~l~~L~~L~l~~~~~~~~~~~~~---~-~~l~~L~l~~~~- 321 (466)
.+++|+.|++++|... +.+|..++ .+++|++|++++|.+.+..+..+ . .++++|+++++.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 4566788888765321 22232222 67788888888876554433222 1 237888887765
Q ss_pred Cc--ccChhhhccCCCCeeeccccccccc----cccccCCCCCCCEEEecCCCCC----CCCCcccCCCCCCcEEEccCC
Q 012324 322 IE--ELPSSIDRLRRLGYLNLSDCKRLKS----LPSSLCKLKSLKVLNLCGCSNL----QRLPECLGQLSSPIILNLAKT 391 (466)
Q Consensus 322 i~--~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~----~~~p~~l~~l~~L~~L~l~~~ 391 (466)
+. .++.....+++|++|++++|.+.+. ++.....+++|++|++++|... ..++..+.++++|+.|++++|
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 22 2333445778888888888765443 3333456778888888877665 234445567788888888888
Q ss_pred CccccchhhhccCCCcEeecccC
Q 012324 392 NIERIPESIIQLFVLRYLLLSYS 414 (466)
Q Consensus 392 ~l~~lp~~l~~l~~L~~L~l~~~ 414 (466)
.+..+|..+.++++|++|+++.+
T Consensus 231 ~~~~l~~~~~~~~~L~~L~l~~~ 253 (592)
T 3ogk_B 231 EILELVGFFKAAANLEEFCGGSL 253 (592)
T ss_dssp BGGGGHHHHHHCTTCCEEEECBC
T ss_pred cHHHHHHHHhhhhHHHhhccccc
Confidence 88888777888888888888753
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=5.7e-09 Score=98.72 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=77.6
Q ss_pred cCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCc-EEEccCCCccccc-hhhhccCCCcEe
Q 012324 332 LRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPI-ILNLAKTNIERIP-ESIIQLFVLRYL 409 (466)
Q Consensus 332 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~-~L~l~~~~l~~lp-~~l~~l~~L~~L 409 (466)
+++|+.+++.+|.+...-+..+..+.+|+.+++.++ ....-+..|..+++|+ .+.+.. +++.++ ..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 789999999987744433456888999999999885 5555556799999999 999988 777775 478899999999
Q ss_pred ecccCcCCCcCCCCeEeccCCCCccccc
Q 012324 410 LLSYSERFQSLPKPLFLARGCLALEPFL 437 (466)
Q Consensus 410 ~l~~~~~~~~~p~~~~~l~~~~~L~~l~ 437 (466)
++..|. +..++...+ .+|++|+.++
T Consensus 303 ~l~~n~-i~~I~~~aF--~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDK-ITTLGDELF--GNGVPSKLIY 327 (329)
T ss_dssp EECSSC-CCEECTTTT--CTTCCCCEEE
T ss_pred EeCCCc-cCccchhhh--cCCcchhhhc
Confidence 997766 455665443 4788887664
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.91 E-value=2.1e-10 Score=117.77 Aligned_cols=150 Identities=15% Similarity=-0.013 Sum_probs=88.1
Q ss_pred CCCCCcEEEcCCCCCCcc----cCcccccCcccCEEecCCCCCCC----ccCCC--CCCcccEEeecCccCcccChhhhc
Q 012324 262 RLNNLVILNLRSGKSLKS----LPSGIFNLEFLTKLDLSGCSKLK----RLPEI--SSGNVCWLFLRGTAIEELPSSIDR 331 (466)
Q Consensus 262 ~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~----~~~~~--~~~~l~~L~l~~~~i~~lp~~l~~ 331 (466)
.+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+ .++.. ...+|+.|+++++.+..+|..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 567888888888865443 33345577888888888887652 22221 235778888888888888877888
Q ss_pred cCCCCeeeccccccc---cccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc--ccchhhhccCCC
Q 012324 332 LRRLGYLNLSDCKRL---KSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE--RIPESIIQLFVL 406 (466)
Q Consensus 332 l~~L~~L~l~~~~~~---~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L 406 (466)
+++|++|+++.+... ...+..+..+++|+.|+++++ ....+|..+..+++|+.|++++|.++ .++..+.++++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 888888888643221 122233445555555555442 23344444455555555555555543 222223444444
Q ss_pred cEeecc
Q 012324 407 RYLLLS 412 (466)
Q Consensus 407 ~~L~l~ 412 (466)
++|+++
T Consensus 321 ~~L~L~ 326 (592)
T 3ogk_B 321 EVLETR 326 (592)
T ss_dssp CEEEEE
T ss_pred CEEecc
Confidence 444444
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=1.2e-08 Score=96.55 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=64.3
Q ss_pred CCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCc-EeecccCcCCCcCCCCeEeccCCCCc
Q 012324 356 LKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLR-YLLLSYSERFQSLPKPLFLARGCLAL 433 (466)
Q Consensus 356 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~-~L~l~~~~~~~~~p~~~~~l~~~~~L 433 (466)
+++|+.+++++|.....-+..|..+++|+.+++..| ++.++. .|.++++|+ .+.+.. .+..++..-+ .+|++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF--~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF--MGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTT--TTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhh--hCCccC
Confidence 688999999987766555567999999999999887 777765 688899999 999976 3556665443 578888
Q ss_pred cccccCccccCCCC
Q 012324 434 EPFLGIIEDTQRIP 447 (466)
Q Consensus 434 ~~l~~~~~~~~~~~ 447 (466)
+.+....+.+..+.
T Consensus 300 ~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 300 RYVLATGDKITTLG 313 (329)
T ss_dssp EEEEECSSCCCEEC
T ss_pred CEEEeCCCccCccc
Confidence 87765444444443
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=2.4e-08 Score=95.20 Aligned_cols=89 Identities=22% Similarity=0.069 Sum_probs=49.3
Q ss_pred cCcccccCcccCEEecCC-CCCCCccCCCC--CCcccEEeecCccCcccCh-hhhccCCCCeeeccccccccccccccCC
Q 012324 280 LPSGIFNLEFLTKLDLSG-CSKLKRLPEIS--SGNVCWLFLRGTAIEELPS-SIDRLRRLGYLNLSDCKRLKSLPSSLCK 355 (466)
Q Consensus 280 ~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~--~~~l~~L~l~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~ 355 (466)
+|. +..+++|++|+|++ |.+.+..+..+ ..+|+.|+|++|+++.+|+ .+.++++|++|+|++|.+. .+|+.+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcc
Confidence 555 55555555555554 44333332222 2345555555566665544 4677777777777777644 44443333
Q ss_pred CCCCCEEEecCCCCC
Q 012324 356 LKSLKVLNLCGCSNL 370 (466)
Q Consensus 356 l~~L~~L~l~~~~~~ 370 (466)
...|+.|++.+|.+.
T Consensus 102 ~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCCEEECCSSCCC
T ss_pred cCCceEEEeeCCCcc
Confidence 333777777776654
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.69 E-value=3.4e-09 Score=108.71 Aligned_cols=150 Identities=21% Similarity=0.092 Sum_probs=74.0
Q ss_pred CCCCCcEEEcCCCCCCcc----cCcccccCcccCEEecCCCC--CCCc-cCC--CCCCcccEEeecCc-cCcccChhhhc
Q 012324 262 RLNNLVILNLRSGKSLKS----LPSGIFNLEFLTKLDLSGCS--KLKR-LPE--ISSGNVCWLFLRGT-AIEELPSSIDR 331 (466)
Q Consensus 262 ~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~--~~~~-~~~--~~~~~l~~L~l~~~-~i~~lp~~l~~ 331 (466)
.+++|++|++++|.+.+. ++.....+++|+.|++++|. .... ++. ....+|+.|++++| .+..+|..+..
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 456666666666653332 22222345566666666664 1100 110 01245666666665 44455555666
Q ss_pred cCCCCeeecccccc------------------------------ccccccccCCCCCCCEEEecCCCCCCCC-CcccCCC
Q 012324 332 LRRLGYLNLSDCKR------------------------------LKSLPSSLCKLKSLKVLNLCGCSNLQRL-PECLGQL 380 (466)
Q Consensus 332 l~~L~~L~l~~~~~------------------------------~~~~p~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l 380 (466)
+++|++|++..+.. ...++..+..+++|++|++++|.+.... +..+..+
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 66666666443310 0011221224556666666666533221 2224556
Q ss_pred CCCcEEEccCCCcc--ccchhhhccCCCcEeecc
Q 012324 381 SSPIILNLAKTNIE--RIPESIIQLFVLRYLLLS 412 (466)
Q Consensus 381 ~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~ 412 (466)
++|+.|++++| +. .++.....+++|++|++.
T Consensus 314 ~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 314 PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 66666666665 33 233333446677777663
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=1.6e-08 Score=96.34 Aligned_cols=155 Identities=13% Similarity=0.125 Sum_probs=100.3
Q ss_pred CCCCCcEEEcCCCCC---------CcccCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcc-cChhhh-
Q 012324 262 RLNNLVILNLRSGKS---------LKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEE-LPSSID- 330 (466)
Q Consensus 262 ~l~~L~~L~l~~~~~---------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~-lp~~l~- 330 (466)
++++|+.|.+.+... .+.+...+..+++|+.|++++|... .++.....+|+.|++..+.+.. ....++
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSCBCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eeccccCCCCcEEEEecCCCChHHHHHHHH
Confidence 345777777754321 1123344566788899988887432 2333335678899988877652 222333
Q ss_pred -ccCCCCeeecccc--cccc-----cccccc--CCCCCCCEEEecCCCCCCCCCccc---CCCCCCcEEEccCCCccc--
Q 012324 331 -RLRRLGYLNLSDC--KRLK-----SLPSSL--CKLKSLKVLNLCGCSNLQRLPECL---GQLSSPIILNLAKTNIER-- 395 (466)
Q Consensus 331 -~l~~L~~L~l~~~--~~~~-----~~p~~~--~~l~~L~~L~l~~~~~~~~~p~~l---~~l~~L~~L~l~~~~l~~-- 395 (466)
.+++|++|+|+.+ ...+ .+...+ ..+++|++|++.+|.+....+..+ ..+++|+.|+++.|.+..
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 7899999998532 1111 111222 358899999999887654333332 357899999999999873
Q ss_pred ---cchhhhccCCCcEeecccCcCC
Q 012324 396 ---IPESIIQLFVLRYLLLSYSERF 417 (466)
Q Consensus 396 ---lp~~l~~l~~L~~L~l~~~~~~ 417 (466)
++..+.++++|+.|+++.|.+.
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHhhcccCCcceEEECCCCcCC
Confidence 4555678899999999988643
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.66 E-value=2.1e-09 Score=103.21 Aligned_cols=132 Identities=17% Similarity=0.027 Sum_probs=101.7
Q ss_pred CCCCcEEEcCCCCCCcccCccc-ccCcccCEEecCCCCCCCccCCC-------CCCcccEEeecCccCcc-----cChhh
Q 012324 263 LNNLVILNLRSGKSLKSLPSGI-FNLEFLTKLDLSGCSKLKRLPEI-------SSGNVCWLFLRGTAIEE-----LPSSI 329 (466)
Q Consensus 263 l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~-------~~~~l~~L~l~~~~i~~-----lp~~l 329 (466)
.++|+.|+|++|.+...-...+ ..+++|+.|++++|.+....... ....++.|++++|.++. ++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 4699999999997765433223 34678999999999876543221 23578999999999973 56667
Q ss_pred hccCCCCeeeccccccccc----cccccCCCCCCCEEEecCCCCCCC----CCcccCCCCCCcEEEccCCCcc
Q 012324 330 DRLRRLGYLNLSDCKRLKS----LPSSLCKLKSLKVLNLCGCSNLQR----LPECLGQLSSPIILNLAKTNIE 394 (466)
Q Consensus 330 ~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l~ 394 (466)
...++|++|++++|.+... ++..+...++|++|++++|.+... ++..+...++|+.|++++|.++
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 8899999999999986543 355677788999999999987653 4455667789999999999998
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.56 E-value=6.7e-09 Score=106.54 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=47.2
Q ss_pred hhccCCCCeeeccccccccccccccCC-CCCCCEEEecCCCCCCCCCccc-CCCCCCcEEEccCCCcc--ccchhhhccC
Q 012324 329 IDRLRRLGYLNLSDCKRLKSLPSSLCK-LKSLKVLNLCGCSNLQRLPECL-GQLSSPIILNLAKTNIE--RIPESIIQLF 404 (466)
Q Consensus 329 l~~l~~L~~L~l~~~~~~~~~p~~~~~-l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~~~~l~--~lp~~l~~l~ 404 (466)
+..+++|++|++++ .+....+..++. +++|+.|++++|.+.+..+..+ ..+++|+.|++++|.++ .+...+..++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34455556665544 222222233333 5666666666666544333333 44667777777777665 2222344566
Q ss_pred CCcEeecccCcC
Q 012324 405 VLRYLLLSYSER 416 (466)
Q Consensus 405 ~L~~L~l~~~~~ 416 (466)
+|++|++++|+.
T Consensus 507 ~L~~L~l~~~~~ 518 (594)
T 2p1m_B 507 TMRSLWMSSCSV 518 (594)
T ss_dssp GSSEEEEESSCC
T ss_pred CCCEEeeeCCCC
Confidence 777777777654
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.46 E-value=2.9e-06 Score=82.07 Aligned_cols=168 Identities=11% Similarity=0.096 Sum_probs=82.1
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCCC---CcccEEeecCccCcccChh-hhccCC
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS---GNVCWLFLRGTAIEELPSS-IDRLRR 334 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~l~~~~i~~lp~~-l~~l~~ 334 (466)
.|.+|++|+.+++.+|.+ ..++.....+.+|+.+.+..+ ...++...+ .+|+.+++..+ +..++.. +.+ .+
T Consensus 175 aF~~c~~L~~l~l~~n~l-~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKI-TKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG 249 (401)
T ss_dssp TTTTCTTCCEEECTTSCC-SEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC
T ss_pred HhhCcccCCeeecCCCcc-eEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC
Confidence 466667777777765533 233332223455666665533 223332211 24555555542 4444332 222 45
Q ss_pred CCeeeccccccccccccccCCCCCCCEEEecCCCCC-----CCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcE
Q 012324 335 LGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNL-----QRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRY 408 (466)
Q Consensus 335 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-----~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~ 408 (466)
|+.+.+.. .+...-...+..+++|+.+.+.++... ...+..|..|++|+.+.+. ++++.++. .|.++++|+.
T Consensus 250 L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCE
T ss_pred ccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccE
Confidence 55555532 222222344556666666666554332 1223456666666666666 34555543 4556666666
Q ss_pred eecccCcCCCcCCCCeEeccCCCCcccccc
Q 012324 409 LLLSYSERFQSLPKPLFLARGCLALEPFLG 438 (466)
Q Consensus 409 L~l~~~~~~~~~p~~~~~l~~~~~L~~l~~ 438 (466)
+.+..+ +..++..-+ .+| +|+.+..
T Consensus 328 l~lp~~--l~~I~~~aF--~~~-~L~~l~l 352 (401)
T 4fdw_A 328 LTIPAN--VTQINFSAF--NNT-GIKEVKV 352 (401)
T ss_dssp EEECTT--CCEECTTSS--SSS-CCCEEEE
T ss_pred EEECcc--ccEEcHHhC--CCC-CCCEEEE
Confidence 666443 334443322 344 5554443
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.27 E-value=1.4e-05 Score=77.38 Aligned_cols=169 Identities=11% Similarity=0.029 Sum_probs=116.2
Q ss_pred CCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCCCC-CCcccEEeecCccCcccCh-hhhccCCCC
Q 012324 259 LMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNVCWLFLRGTAIEELPS-SIDRLRRLG 336 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~l~~L~l~~~~i~~lp~-~l~~l~~L~ 336 (466)
.|.++ +|+.+.+..+ +...-+..|.+|++|+.+++.+|.+.......+ ...++.+.+.. ++..++. .+.++++|+
T Consensus 153 aF~~~-~L~~i~lp~~-l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~ 229 (401)
T 4fdw_A 153 AFFNS-TVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLK 229 (401)
T ss_dssp TTTTC-CCCEEECCTT-CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCC
T ss_pred hcCCC-CceEEEeCCC-ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCC
Confidence 35554 5888888753 444444668889999999998876443222222 24678888874 4676655 577888999
Q ss_pred eeecccccccccccc-ccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCcc-----ccch-hhhccCCCcEe
Q 012324 337 YLNLSDCKRLKSLPS-SLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIE-----RIPE-SIIQLFVLRYL 409 (466)
Q Consensus 337 ~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-----~lp~-~l~~l~~L~~L 409 (466)
.+.+..+ ...++. .+.. .+|+.+.+.. +....-+..|.++++|+.+.+.++.+. .++. .|.++++|+.+
T Consensus 230 ~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 230 TIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp CEECCTT--CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred EEecCCC--ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence 9998863 344443 3444 7899999955 455455678999999999999887765 4544 78889999999
Q ss_pred ecccCcCCCcCCCCeEeccCCCCcccccc
Q 012324 410 LLSYSERFQSLPKPLFLARGCLALEPFLG 438 (466)
Q Consensus 410 ~l~~~~~~~~~p~~~~~l~~~~~L~~l~~ 438 (466)
.+..+ +..++...+ .+|.+|+.+..
T Consensus 306 ~l~~~--i~~I~~~aF--~~c~~L~~l~l 330 (401)
T 4fdw_A 306 EIPES--IRILGQGLL--GGNRKVTQLTI 330 (401)
T ss_dssp CCCTT--CCEECTTTT--TTCCSCCEEEE
T ss_pred EeCCc--eEEEhhhhh--cCCCCccEEEE
Confidence 99843 566666543 46777776543
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.19 E-value=3.8e-07 Score=78.27 Aligned_cols=119 Identities=14% Similarity=0.078 Sum_probs=70.9
Q ss_pred CcccccCcccCEEecCCC-CCCCccCCCCCCcccEEeecCccCcccChhhhccCCCCeeeccccccccc----cccccCC
Q 012324 281 PSGIFNLEFLTKLDLSGC-SKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKS----LPSSLCK 355 (466)
Q Consensus 281 ~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~ 355 (466)
...+...+.|++|++++| .+... .+..+...+...++|++|++++|.+... +...+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~-----------------g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~ 91 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVP-----------------TLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV 91 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHH-----------------HHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHH-----------------HHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHh
Confidence 334556777888888776 43221 1113344455556677777776654332 2233445
Q ss_pred CCCCCEEEecCCCCCCC----CCcccCCCCCCcEEEc--cCCCcc-----ccchhhhccCCCcEeecccCcC
Q 012324 356 LKSLKVLNLCGCSNLQR----LPECLGQLSSPIILNL--AKTNIE-----RIPESIIQLFVLRYLLLSYSER 416 (466)
Q Consensus 356 l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l--~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~ 416 (466)
.++|++|++++|.+... +.+.+...+.|+.|++ ++|.+. .+...+...++|++|++++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 56677777777665432 3445666677788887 677776 2444556667788888877753
No 153
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.17 E-value=7.3e-06 Score=77.75 Aligned_cols=189 Identities=14% Similarity=0.202 Sum_probs=109.9
Q ss_pred eEEEEEeCCCChH--------h-HHHHHhcCCCCCCCcEEEEEeCChhhHhhc-----------C-cceEEEccCCChhh
Q 012324 2 KVLIVFDDVTCFS--------Q-LESIIRSLDWLTPVSRIIITTRNKQVLRNW-----------G-VRKIYEIEALENHH 60 (466)
Q Consensus 2 r~LlvlDd~~~~~--------~-~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~-----------~-~~~~~~l~~L~~~~ 60 (466)
+.+|||||+.... + +..+...+. ...+.++|+|++...+.... + ....+++.+|+.+|
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e 207 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDT 207 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHH
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHH
Confidence 6899999997633 2 333332211 12467899999876542211 1 12479999999999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCceeehhhhhhccc-CCHHHHHHHHHHHHhccchhHHHHHHHHHhcC-
Q 012324 61 ALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVPLALKVLGCFLYE-REKEVSESAINKLQRILHPSILEVLKISYDSL- 138 (466)
Q Consensus 61 ~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~-~~~~~w~~~~~~l~~~~~~~~~~~l~~sy~~L- 138 (466)
+.+++....-...... ..+.+.++.+.++|+|.++..++..+.. .+...+ ...+.+. +...+...+..+
T Consensus 208 ~~~~l~~~~~~~~~~~--~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~l~~l~ 278 (350)
T 2qen_A 208 SVEFLKRGFREVNLDV--PENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRA---MKRTLEV----AKGLIMGELEELR 278 (350)
T ss_dssp HHHHHHHHHHTTTCCC--CHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH---HHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHH---HHHHHHH----HHHHHHHHHHHHH
Confidence 9999987542211111 1456788999999999999988865432 222211 1111111 111111112222
Q ss_pred --chhhhhhhceeeccCCCccHHHHHHHHHhc--CCCc---cchhhhhhcccceEEcCCCeEEe-cHHHHHHH
Q 012324 139 --DNKEKNIFLDVACFFQGEDVNLVMKFLNAS--GFYP---EIGISVLVDKSLIAIGSYNKIRM-HDLLQELG 203 (466)
Q Consensus 139 --~~~~~~~~~~~~~fp~~~~~~~l~~~~~~~--~~~~---~~~~~~L~~~sl~~~~~~~~~~~-hdlv~~~~ 203 (466)
++..+..+..+|. .......+....... +... ..+++.|.+.+++... .+.|++ |++++++.
T Consensus 279 ~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 279 RRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVL 348 (350)
T ss_dssp HHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHH
T ss_pred hCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHH
Confidence 6777888888877 224444454443222 2322 2448889999999875 355655 67887764
No 154
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.10 E-value=9e-06 Score=77.30 Aligned_cols=189 Identities=16% Similarity=0.149 Sum_probs=110.3
Q ss_pred eEEEEEeCCCCh-----HhHHHHHhcCCCCCCCcEEEEEeCChhhHhh----------c-Cc-ceEEEccCCChhhHHHH
Q 012324 2 KVLIVFDDVTCF-----SQLESIIRSLDWLTPVSRIIITTRNKQVLRN----------W-GV-RKIYEIEALENHHALEL 64 (466)
Q Consensus 2 r~LlvlDd~~~~-----~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~----------~-~~-~~~~~l~~L~~~~~~~L 64 (466)
+++|||||+... .+|..+...+.+...+.++|+|+|....... . +. ...+.+.+|+.+|+.++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 689999999653 2333333222222246789999998753221 1 11 25899999999999999
Q ss_pred HHHhhcC-CCCCCchHHHHHHHHHHHhCCCceeehhhhhhccc-CCHHHHHHHHHHHHhccchhHHHHHHHHH---hcCc
Q 012324 65 FSRHAFK-RNHPDVGYEKLSSKVMKYAQGVPLALKVLGCFLYE-REKEVSESAINKLQRILHPSILEVLKISY---DSLD 139 (466)
Q Consensus 65 f~~~~~~-~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~-~~~~~w~~~~~~l~~~~~~~~~~~l~~sy---~~L~ 139 (466)
+...+.. +...+. ...|.+.++|.|+++..++..+.. .+...|. ..+.+.....+...+.-.+ ..++
T Consensus 218 l~~~~~~~~~~~~~-----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~ 289 (357)
T 2fna_A 218 LRRGFQEADIDFKD-----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAI---NQTLEYAKKLILKEFENFLHGREIAR 289 (357)
T ss_dssp HHHHHHHHTCCCCC-----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHH---HHHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHcCCCCCc-----HHHHHHHhCCCHHHHHHHHHHHccccchHHHH---HHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9875421 112221 178999999999999988876543 2332231 1111111011111121111 1678
Q ss_pred hhhhhhhceeeccCCCccHHHHHHHHH-hcC--CCc---cchhhhhhcccceEEcCCCeEE-ecHHHHHH
Q 012324 140 NKEKNIFLDVACFFQGEDVNLVMKFLN-ASG--FYP---EIGISVLVDKSLIAIGSYNKIR-MHDLLQEL 202 (466)
Q Consensus 140 ~~~~~~~~~~~~fp~~~~~~~l~~~~~-~~~--~~~---~~~~~~L~~~sl~~~~~~~~~~-~hdlv~~~ 202 (466)
+..+..+..+|.- . +...+..... ..| ... ...++.|.+.+++...+ +.|+ .|++++++
T Consensus 290 ~~~~~~l~~la~g--~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 290 KRYLNIMRTLSKC--G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHHHTTC--B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHH
T ss_pred HHHHHHHHHHHcC--C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHh
Confidence 8888888888872 2 4444443221 223 222 34588899999998764 5566 56888875
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.09 E-value=5.3e-07 Score=77.36 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=82.2
Q ss_pred CCCCCCCcEEEcCCC-CCCcc----cCcccccCcccCEEecCCCCCCCccCCCCCCcccEEeecCccCcccChhhhccCC
Q 012324 260 MPRLNNLVILNLRSG-KSLKS----LPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNVCWLFLRGTAIEELPSSIDRLRR 334 (466)
Q Consensus 260 ~~~l~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~i~~lp~~l~~l~~ 334 (466)
+...++|+.|+|++| .+... +...+...++|++|++++|.+... ....+...+...++
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~-----------------g~~~l~~~L~~n~~ 94 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP-----------------VAFALAEMLKVNNT 94 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH-----------------HHHHHHHHHHHCSS
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH-----------------HHHHHHHHHHhCCC
Confidence 456689999999998 66543 445566778899999998764321 11234555666678
Q ss_pred CCeeeccccccccc----cccccCCCCCCCEEEe--cCCCCCCC----CCcccCCCCCCcEEEccCCCcc
Q 012324 335 LGYLNLSDCKRLKS----LPSSLCKLKSLKVLNL--CGCSNLQR----LPECLGQLSSPIILNLAKTNIE 394 (466)
Q Consensus 335 L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l--~~~~~~~~----~p~~l~~l~~L~~L~l~~~~l~ 394 (466)
|++|++++|.+... +...+...++|++|++ ++|.+... +.+.+...+.|+.|++++|.+.
T Consensus 95 L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 88888888775443 3455677788999999 66666543 3345556688999999988876
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=1.1e-06 Score=83.62 Aligned_cols=136 Identities=13% Similarity=-0.001 Sum_probs=88.2
Q ss_pred CcccccCcccCEEecCCCCCCC---------ccCC--CCCCcccEEeecCccCcccChhhhccCCCCeeecccccccccc
Q 012324 281 PSGIFNLEFLTKLDLSGCSKLK---------RLPE--ISSGNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSL 349 (466)
Q Consensus 281 ~~~l~~l~~L~~L~l~~~~~~~---------~~~~--~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~ 349 (466)
..++.++++|+.|.+....... .++. ...+.|+.|+++++.-..++. + .+++|++|++..|.+....
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHH
Confidence 4456678999999987643211 1111 123578999998874234554 3 3889999999887754443
Q ss_pred ccccC--CCCCCCEEEecCC--CCCC-----CCCccc--CCCCCCcEEEccCCCcc-ccchhhh---ccCCCcEeecccC
Q 012324 350 PSSLC--KLKSLKVLNLCGC--SNLQ-----RLPECL--GQLSSPIILNLAKTNIE-RIPESII---QLFVLRYLLLSYS 414 (466)
Q Consensus 350 p~~~~--~l~~L~~L~l~~~--~~~~-----~~p~~l--~~l~~L~~L~l~~~~l~-~lp~~l~---~l~~L~~L~l~~~ 414 (466)
...+. .+++|+.|+++.+ ...+ .+...+ ..+++|+.|++++|.+. ..+..+. .+++|++|+++.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 33343 7899999998532 1111 111222 35899999999999887 3333333 5889999999988
Q ss_pred cCCC
Q 012324 415 ERFQ 418 (466)
Q Consensus 415 ~~~~ 418 (466)
.+..
T Consensus 290 ~L~d 293 (362)
T 2ra8_A 290 VLTD 293 (362)
T ss_dssp CCBH
T ss_pred CCCh
Confidence 7544
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=2e-06 Score=72.17 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=42.4
Q ss_pred CCCeeeccccccccccccccCCCCCCCEEEecCCCC-CCCCCcccCCC----CCCcEEEccCC-Ccc-ccchhhhccCCC
Q 012324 334 RLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSN-LQRLPECLGQL----SSPIILNLAKT-NIE-RIPESIIQLFVL 406 (466)
Q Consensus 334 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~-~~~~p~~l~~l----~~L~~L~l~~~-~l~-~lp~~l~~l~~L 406 (466)
+|+.|++++|.+....-..+..+++|++|++++|.. +...-..+..+ ++|++|++++| +++ .-...+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 455555555543333333345566666666666542 22222233332 24666666654 355 112345566667
Q ss_pred cEeecccCcCCC
Q 012324 407 RYLLLSYSERFQ 418 (466)
Q Consensus 407 ~~L~l~~~~~~~ 418 (466)
++|++++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 777766665443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=6e-06 Score=74.55 Aligned_cols=62 Identities=26% Similarity=0.265 Sum_probs=29.0
Q ss_pred ccCCCCeeecccccccc--ccccccCCCCCCCEEEecCCCCCCCCCcccCCCC--CCcEEEccCCCcc
Q 012324 331 RLRRLGYLNLSDCKRLK--SLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLS--SPIILNLAKTNIE 394 (466)
Q Consensus 331 ~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~--~L~~L~l~~~~l~ 394 (466)
++++|+.|+|++|.+.+ .+|..+..+++|+.|++++|.+.+. ..+..+. +|+.|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 45556666665555433 2333344555555555555444332 1122222 4555555555544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.77 E-value=1.5e-05 Score=72.03 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=65.6
Q ss_pred CCCCCCCEEEecCCCCCC--CCCcccCCCCCCcEEEccCCCccccchhhhccC--CCcEeecccCcCCCcCCCC----eE
Q 012324 354 CKLKSLKVLNLCGCSNLQ--RLPECLGQLSSPIILNLAKTNIERIPESIIQLF--VLRYLLLSYSERFQSLPKP----LF 425 (466)
Q Consensus 354 ~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~--~L~~L~l~~~~~~~~~p~~----~~ 425 (466)
.++++|+.|++++|.+.+ .+|..+..+++|+.|+|++|.++.+ ..+..+. +|+.|++++|++.+.+|.. ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 468899999999998877 5667778899999999999999977 3455555 9999999999998888752 12
Q ss_pred eccCCCCcccccc
Q 012324 426 LARGCLALEPFLG 438 (466)
Q Consensus 426 ~l~~~~~L~~l~~ 438 (466)
.+..+++|+.+.+
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 2445666665554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=1.7e-05 Score=66.52 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=24.4
Q ss_pred CCCcEEEcCCCCCCcccCcccccCcccCEEecCCCC
Q 012324 264 NNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCS 299 (466)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 299 (466)
-+|+.||+++|.++..-...+..+++|+.|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 367777887776555544456677777777777764
No 161
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.22 E-value=0.00076 Score=59.77 Aligned_cols=99 Identities=11% Similarity=0.105 Sum_probs=69.9
Q ss_pred eEEEEEeCCCC--hHhHHHHHhcCCCCCCCcEEEEEeCChhhH-hh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTC--FSQLESIIRSLDWLTPVSRIIITTRNKQVL-RN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~--~~~~~~l~~~~~~~~~gs~IlvTTR~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+.+||+||++. .+.++.+...+.....+.++|+||+..... .. ......+++++++.+|..+++.+.+......
T Consensus 127 ~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-- 204 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-- 204 (250)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--
T ss_pred ceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--
Confidence 57999999954 456777776665555678888888765421 11 1223689999999999999999877432211
Q ss_pred hHHHHHHHHHHHhCCCceeehhhhh
Q 012324 78 GYEKLSSKVMKYAQGVPLALKVLGC 102 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~~~~ 102 (466)
-..+....|++.|+|.|..+..+..
T Consensus 205 ~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 205 HEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1245677899999999988776654
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.12 E-value=0.0047 Score=59.38 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=50.3
Q ss_pred cCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecccCcCCCcCCCCeEeccCCC
Q 012324 353 LCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSYSERFQSLPKPLFLARGCL 431 (466)
Q Consensus 353 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~~~ 431 (466)
+..+.+|+.+.+.. +....-..+|.++++|+.+.+.. +++.+.. .|.++++|+.+.+..+ +..++..-+ .+|.
T Consensus 293 F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF--~~C~ 366 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAF--QGCI 366 (394)
T ss_dssp TTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTB--TTCT
T ss_pred cccccccccccccc-ccceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHHHh--hCCC
Confidence 45566777777754 33333345677788888888754 3665543 6777888888887654 445555433 4777
Q ss_pred Ccccccc
Q 012324 432 ALEPFLG 438 (466)
Q Consensus 432 ~L~~l~~ 438 (466)
+|+.+..
T Consensus 367 ~L~~i~l 373 (394)
T 4fs7_A 367 NLKKVEL 373 (394)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 7776443
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.77 E-value=0.0088 Score=57.43 Aligned_cols=16 Identities=6% Similarity=0.243 Sum_probs=9.9
Q ss_pred cccccCcccCEEecCC
Q 012324 282 SGIFNLEFLTKLDLSG 297 (466)
Q Consensus 282 ~~l~~l~~L~~L~l~~ 297 (466)
..+.++.+|+.+.+..
T Consensus 259 ~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPD 274 (394)
T ss_dssp TTTTTCSSCCEEECCT
T ss_pred ceeeecccccEEeccc
Confidence 3456666777766654
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.50 E-value=0.023 Score=54.44 Aligned_cols=162 Identities=9% Similarity=0.007 Sum_probs=102.4
Q ss_pred CCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCC---CCCCcccEEeecCccCcccChhhhccCCCCe
Q 012324 261 PRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---ISSGNVCWLFLRGTAIEELPSSIDRLRRLGY 337 (466)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~l~~~~i~~lp~~l~~l~~L~~ 337 (466)
.....|+.+.+... ....-...+..+..|+.+.+..+.. .++. .....++.+....+.+. ...+..+.+|+.
T Consensus 227 ~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~ 301 (394)
T 4fs7_A 227 LSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTE 301 (394)
T ss_dssp TTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCE
T ss_pred cccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceeec--cccccccccccc
Confidence 34567888888654 3322334466788888888876532 2222 22234455555443322 124677888998
Q ss_pred eecccccccccc-ccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeecccCc
Q 012324 338 LNLSDCKRLKSL-PSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSYSE 415 (466)
Q Consensus 338 L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 415 (466)
+.+..+ ...+ ...+..+.+|+.+.+.. +....-..+|.++++|+.+.+..+ ++.+.. .|.++++|+.+.+..+-
T Consensus 302 i~l~~~--i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~ 377 (394)
T 4fs7_A 302 VKLLDS--VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL 377 (394)
T ss_dssp EEECTT--CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG
T ss_pred cccccc--cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC
Confidence 888753 3333 35577889999999865 344444568899999999999765 676654 78889999999987542
Q ss_pred CCCcCCCCeEeccCCCCcccc
Q 012324 416 RFQSLPKPLFLARGCLALEPF 436 (466)
Q Consensus 416 ~~~~~p~~~~~l~~~~~L~~l 436 (466)
..+.. ...+|++|+.+
T Consensus 378 --~~~~~---~F~~c~~L~~I 393 (394)
T 4fs7_A 378 --EQYRY---DFEDTTKFKWI 393 (394)
T ss_dssp --GGGGG---GBCTTCEEEEE
T ss_pred --EEhhh---eecCCCCCcEE
Confidence 22322 24577777643
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.37 E-value=0.032 Score=53.12 Aligned_cols=146 Identities=12% Similarity=0.072 Sum_probs=78.9
Q ss_pred CCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCCCCCCccCC---CCCCcccEEeecCccCcccCh-hhhccCCCC
Q 012324 261 PRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---ISSGNVCWLFLRGTAIEELPS-SIDRLRRLG 336 (466)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~l~~~~i~~lp~-~l~~l~~L~ 336 (466)
..+..+..+.+... ........+..+.+|+.+.+..+ ...++. .....++.+.+..+ ++.++. .+.++.+|+
T Consensus 191 ~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 191 PAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred cccccccccccccc-eeEEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 33444444444332 22222233444555555555432 111111 11234455555433 444433 456677777
Q ss_pred eeeccccccccccc-cccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhccCCCcEeeccc
Q 012324 337 YLNLSDCKRLKSLP-SSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQLFVLRYLLLSY 413 (466)
Q Consensus 337 ~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~ 413 (466)
.+.+..+ ...++ ..+..+.+|+.+.+.++.....-...|.++.+|+.+.+..+ ++.+.. .|.++++|+.+.+..
T Consensus 267 ~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 267 TLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 7777542 23333 34667788888888765554444567788888888888643 565544 577778888777753
No 166
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.32 E-value=0.0025 Score=61.58 Aligned_cols=179 Identities=11% Similarity=0.128 Sum_probs=97.4
Q ss_pred CeEEEEEeCCCCh--------HhHHHHHhcCCCC---C--CCcEEEEEeCChhhHhhcC---------cceEEEccCCCh
Q 012324 1 MKVLIVFDDVTCF--------SQLESIIRSLDWL---T--PVSRIIITTRNKQVLRNWG---------VRKIYEIEALEN 58 (466)
Q Consensus 1 kr~LlvlDd~~~~--------~~~~~l~~~~~~~---~--~gs~IlvTTR~~~v~~~~~---------~~~~~~l~~L~~ 58 (466)
++++|||||++.. +.+..+...+.+. + ....||+||+..++..... ....+++++++.
T Consensus 138 ~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred CeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence 4789999999753 2344333322211 2 3344787887665432111 123499999999
Q ss_pred hhHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhC------CCceeehhhhhhcc------cC---CHHHHHHHHHHHH
Q 012324 59 HHALELFSRHA---FKRNHPDVGYEKLSSKVMKYAQ------GVPLALKVLGCFLY------ER---EKEVSESAINKLQ 120 (466)
Q Consensus 59 ~~~~~Lf~~~~---~~~~~~~~~~~~~~~~i~~~c~------glPlai~~~~~~l~------~~---~~~~w~~~~~~l~ 120 (466)
++++++|...+ +.+...+ .+.+..|++.++ |.|..+..+..... .. +...+..+.....
T Consensus 218 ~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 218 RELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 99999997654 3322222 456778888899 99976655543211 01 1222222222110
Q ss_pred hccchhHHHHHHHHHhcCchhhhhhhceeeccC----CCccHHHHHHHH-----HhcCCCc------cchhhhhhcccce
Q 012324 121 RILHPSILEVLKISYDSLDNKEKNIFLDVACFF----QGEDVNLVMKFL-----NASGFYP------EIGISVLVDKSLI 185 (466)
Q Consensus 121 ~~~~~~~~~~l~~sy~~L~~~~~~~~~~~~~fp----~~~~~~~l~~~~-----~~~~~~~------~~~~~~L~~~sl~ 185 (466)
. ...+..++..||+..+.++..++.+. ..+....+...+ ...|..+ ...++.|.+.+++
T Consensus 295 ---~---~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli 368 (412)
T 1w5s_A 295 ---A---ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLV 368 (412)
T ss_dssp -----------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSE
T ss_pred ---c---cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCE
Confidence 0 12233455788888888888787653 123343332222 1223221 2347888889998
Q ss_pred EEc
Q 012324 186 AIG 188 (466)
Q Consensus 186 ~~~ 188 (466)
...
T Consensus 369 ~~~ 371 (412)
T 1w5s_A 369 DAK 371 (412)
T ss_dssp EEE
T ss_pred Eee
Confidence 764
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.19 E-value=0.067 Score=50.83 Aligned_cols=172 Identities=13% Similarity=0.081 Sum_probs=106.2
Q ss_pred CCCCCCCCcEEEcCCCCCCcc------------cCcccccCcccCEEecCCCCCC-CccCCCCCCcccEEeecCccCccc
Q 012324 259 LMPRLNNLVILNLRSGKSLKS------------LPSGIFNLEFLTKLDLSGCSKL-KRLPEISSGNVCWLFLRGTAIEEL 325 (466)
Q Consensus 259 ~~~~l~~L~~L~l~~~~~~~~------------~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~l~~~~i~~l 325 (466)
.+..+..+..+.+..+..... ....+..+..+..+.+...... ..........++.+.+..+ +..+
T Consensus 153 ~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i 231 (379)
T 4h09_A 153 IGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTL 231 (379)
T ss_dssp TTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEE
T ss_pred hhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccceeeeccc-eeEE
Confidence 467778888887765432211 1122334444555544432111 1111222345666666543 4444
Q ss_pred C-hhhhccCCCCeeeccccccccccccccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEccCCCccccch-hhhcc
Q 012324 326 P-SSIDRLRRLGYLNLSDCKRLKSLPSSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLAKTNIERIPE-SIIQL 403 (466)
Q Consensus 326 p-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l 403 (466)
+ ..+.++..|+.+.+..+ ....-...+..+.+|+.+.+.. .........|..+++|+.+.+..+.++.++. .|.++
T Consensus 232 ~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c 309 (379)
T 4h09_A 232 GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC 309 (379)
T ss_dssp CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred ccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCC
Confidence 3 35678889999988753 2222234567888999999965 3443334578899999999999998987765 78899
Q ss_pred CCCcEeecccCcCCCcCCCCeEeccCCCCccccc
Q 012324 404 FVLRYLLLSYSERFQSLPKPLFLARGCLALEPFL 437 (466)
Q Consensus 404 ~~L~~L~l~~~~~~~~~p~~~~~l~~~~~L~~l~ 437 (466)
++|+.+.+..+ +..++..-+ .+|.+|+.+.
T Consensus 310 ~~L~~i~lp~~--l~~I~~~aF--~~C~~L~~i~ 339 (379)
T 4h09_A 310 VKLSSVTLPTA--LKTIQVYAF--KNCKALSTIS 339 (379)
T ss_dssp TTCCEEECCTT--CCEECTTTT--TTCTTCCCCC
T ss_pred CCCCEEEcCcc--ccEEHHHHh--hCCCCCCEEE
Confidence 99999999644 455555433 4777777644
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.05 E-value=0.064 Score=51.31 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=62.0
Q ss_pred CcccEEeecCccCcccChhhhccCCCCeeeccccccccccc-cccCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEc
Q 012324 310 GNVCWLFLRGTAIEELPSSIDRLRRLGYLNLSDCKRLKSLP-SSLCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNL 388 (466)
Q Consensus 310 ~~l~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 388 (466)
..++.+.+..+...--...+.++.+|+.+.+.. . ...++ ..+..+.+|+.+.+.. +.......+|..|++|+.+.+
T Consensus 265 ~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEecccccceecCcccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEE
Confidence 345666665433222223456777777777753 2 33333 4466777888887765 343334456777888888887
Q ss_pred cCCCccccch-hhhccCCCcEeecccCc
Q 012324 389 AKTNIERIPE-SIIQLFVLRYLLLSYSE 415 (466)
Q Consensus 389 ~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 415 (466)
.. +++.+.. .|.++++|+.+.+.++.
T Consensus 342 p~-sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 342 PS-SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CT-TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred Cc-ccCEEhHhHhhCCCCCCEEEECCce
Confidence 54 3565543 67778888888777653
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.86 E-value=0.0056 Score=52.11 Aligned_cols=15 Identities=7% Similarity=-0.002 Sum_probs=9.6
Q ss_pred cccCcccCEEecCCC
Q 012324 284 IFNLEFLTKLDLSGC 298 (466)
Q Consensus 284 l~~l~~L~~L~l~~~ 298 (466)
+.+-+.|+.|++++|
T Consensus 37 l~~n~~L~~L~L~~n 51 (197)
T 1pgv_A 37 REDDTDLKEVNINNM 51 (197)
T ss_dssp HTTCSSCCEEECTTC
T ss_pred HhcCCCccEEECCCC
Confidence 344566777777764
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.70 E-value=0.023 Score=44.92 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=20.2
Q ss_pred CCcEEEccCCCccccch-hhhccCCCcEeecccCcC
Q 012324 382 SPIILNLAKTNIERIPE-SIIQLFVLRYLLLSYSER 416 (466)
Q Consensus 382 ~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~ 416 (466)
+|+.|+|++|+|+.+|. .|..+++|+.|+|++|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 45666666666665554 345566666666666553
No 171
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.45 E-value=0.02 Score=49.51 Aligned_cols=97 Identities=8% Similarity=0.062 Sum_probs=63.8
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChhhH-hh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQVL-RN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+.+||+||++.. ...+.+...+.....+.++|+||+..... .. ......+++++++.++..+++.+.+......
T Consensus 103 ~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-- 180 (226)
T 2chg_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-- 180 (226)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC--
Confidence 578999999754 34555555544445677888888876321 11 1222489999999999999998876421111
Q ss_pred hHHHHHHHHHHHhCCCceeehhh
Q 012324 78 GYEKLSSKVMKYAQGVPLALKVL 100 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~~ 100 (466)
-..+..+.+++.++|.|..+..+
T Consensus 181 ~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 181 ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11456677889999999765443
No 172
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.95 E-value=0.032 Score=51.66 Aligned_cols=95 Identities=8% Similarity=0.110 Sum_probs=62.5
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChhh-Hhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQV-LRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+.++|+||++.. +.++.+...+.+...++++|+||+...- ... ......+++++++.++..+++...+......
T Consensus 108 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~-- 185 (323)
T 1sxj_B 108 HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK-- 185 (323)
T ss_dssp CEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--
T ss_pred ceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCC--
Confidence 678999999753 3455555444434567788888876532 111 1223589999999999999998876321111
Q ss_pred hHHHHHHHHHHHhCCCceeeh
Q 012324 78 GYEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~ 98 (466)
-..+.+..+++.++|.|..+.
T Consensus 186 ~~~~~~~~l~~~~~G~~r~a~ 206 (323)
T 1sxj_B 186 YTNDGLEAIIFTAEGDMRQAI 206 (323)
T ss_dssp BCHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 114566789999999995543
No 173
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.90 E-value=0.079 Score=50.34 Aligned_cols=175 Identities=15% Similarity=0.064 Sum_probs=94.9
Q ss_pred EEEEEeCCCChHh---HHHHHhcCCCCCCCcEEEEEeCChhhHhhc------CcceEEEccCCChhhHHHHHHHhhc---
Q 012324 3 VLIVFDDVTCFSQ---LESIIRSLDWLTPVSRIIITTRNKQVLRNW------GVRKIYEIEALENHHALELFSRHAF--- 70 (466)
Q Consensus 3 ~LlvlDd~~~~~~---~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~------~~~~~~~l~~L~~~~~~~Lf~~~~~--- 70 (466)
.+|||||++.... .+.+...+.....+..||+||+.......+ .....+.+++++.++..+++...+.
T Consensus 135 ~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~ 214 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL 214 (384)
T ss_dssp EEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS
T ss_pred CEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc
Confidence 3899999975432 122021211111677889999876321111 1123899999999999999998753
Q ss_pred CCCCCCchHHHHHHHHHHHhC---CCceeeh-hhhh--hcc-c---CCHHHHHHHHHHHHhccchhHHHHHHHHHhcCch
Q 012324 71 KRNHPDVGYEKLSSKVMKYAQ---GVPLALK-VLGC--FLY-E---REKEVSESAINKLQRILHPSILEVLKISYDSLDN 140 (466)
Q Consensus 71 ~~~~~~~~~~~~~~~i~~~c~---glPlai~-~~~~--~l~-~---~~~~~w~~~~~~l~~~~~~~~~~~l~~sy~~L~~ 140 (466)
.+...+ .+..+.+++.++ |.|..+. .+.. .++ + -+.+.+..+++... ...+..++..|++
T Consensus 215 ~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~ 284 (384)
T 2qby_B 215 IKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPF 284 (384)
T ss_dssp CTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCH
T ss_pred ccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCH
Confidence 222223 334566777777 8776332 2221 111 1 14555665555532 2346667788888
Q ss_pred hhhhhhceeeccCCCccHH-HHHHHHHhcCCCc------cchhhhhhcccceEE
Q 012324 141 KEKNIFLDVACFFQGEDVN-LVMKFLNASGFYP------EIGISVLVDKSLIAI 187 (466)
Q Consensus 141 ~~~~~~~~~~~fp~~~~~~-~l~~~~~~~~~~~------~~~~~~L~~~sl~~~ 187 (466)
..+..+..++....+.++. .....-...|..+ ...+..|...+++..
T Consensus 285 ~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 285 HYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp HHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 7777766666511101222 1111112222111 223677888888876
No 174
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.81 E-value=0.058 Score=42.56 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=29.1
Q ss_pred EEecCCCCCC-CccCCCCCCcccEEeecCccCcccChh-hhccCCCCeeeccccc
Q 012324 292 KLDLSGCSKL-KRLPEISSGNVCWLFLRGTAIEELPSS-IDRLRRLGYLNLSDCK 344 (466)
Q Consensus 292 ~L~l~~~~~~-~~~~~~~~~~l~~L~l~~~~i~~lp~~-l~~l~~L~~L~l~~~~ 344 (466)
.++-+++.+. ..+|..+..+++.|+|++|+|+.+|.. +..+++|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3444444332 245555555566666666666666553 4556666666666554
No 175
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.72 E-value=0.071 Score=50.55 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=79.2
Q ss_pred eEEEEEeCCCCh------HhHHHHHhcCCC-CCCCcEEEEEeCChhhHhhcC-------cceEEEccCCChhhHHHHHHH
Q 012324 2 KVLIVFDDVTCF------SQLESIIRSLDW-LTPVSRIIITTRNKQVLRNWG-------VRKIYEIEALENHHALELFSR 67 (466)
Q Consensus 2 r~LlvlDd~~~~------~~~~~l~~~~~~-~~~gs~IlvTTR~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~ 67 (466)
+.+||||+++.. +.+..+...+.. ...+..+|+||+.......+. ....+.+++++.++..+++.+
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~ 208 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTK 208 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHH
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHH
Confidence 679999998643 234444433311 133456788888765433221 125899999999999999988
Q ss_pred hhc---CCCCCCchHHHHHHHHHHHhC---CCceeehhhhhhcc------c--C-CHHHHHHHHHHHHhccchhHHHHHH
Q 012324 68 HAF---KRNHPDVGYEKLSSKVMKYAQ---GVPLALKVLGCFLY------E--R-EKEVSESAINKLQRILHPSILEVLK 132 (466)
Q Consensus 68 ~~~---~~~~~~~~~~~~~~~i~~~c~---glPlai~~~~~~l~------~--~-~~~~w~~~~~~l~~~~~~~~~~~l~ 132 (466)
.+. .....+ .+..+.+++.++ |.|..+..+..... + . +.+....+..... ...+.
T Consensus 209 ~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~ 278 (386)
T 2qby_A 209 RAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE-------RDRVR 278 (386)
T ss_dssp HHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH-------HHHHH
T ss_pred HHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------hchHH
Confidence 642 222222 445566777776 98875443322111 1 1 3344444443322 23455
Q ss_pred HHHhcCchhhhhhhceeec
Q 012324 133 ISYDSLDNKEKNIFLDVAC 151 (466)
Q Consensus 133 ~sy~~L~~~~~~~~~~~~~ 151 (466)
-.+..++...+..+..++.
T Consensus 279 ~~~~~l~~~~~~il~ai~~ 297 (386)
T 2qby_A 279 DIILTLPFHSKLVLMAVVS 297 (386)
T ss_dssp HHHHTSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6677888777766665553
No 176
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.37 E-value=0.026 Score=48.00 Aligned_cols=104 Identities=13% Similarity=0.028 Sum_probs=48.8
Q ss_pred cccEEeecCc-cCc-----ccChhhhccCCCCeeecccccccccc----ccccCCCCCCCEEEecCCCCCCC----CCcc
Q 012324 311 NVCWLFLRGT-AIE-----ELPSSIDRLRRLGYLNLSDCKRLKSL----PSSLCKLKSLKVLNLCGCSNLQR----LPEC 376 (466)
Q Consensus 311 ~l~~L~l~~~-~i~-----~lp~~l~~l~~L~~L~l~~~~~~~~~----p~~~~~l~~L~~L~l~~~~~~~~----~p~~ 376 (466)
.++.|+++++ .|. .+...+..-+.|+.|+|++|.+.... .+.+..-+.|++|++++|.+... +-+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4556666653 544 23344444556666666665543221 12233445566666665544322 1223
Q ss_pred cCCCCCCcEEEccCC---Ccc-----ccchhhhccCCCcEeecccC
Q 012324 377 LGQLSSPIILNLAKT---NIE-----RIPESIIQLFVLRYLLLSYS 414 (466)
Q Consensus 377 l~~l~~L~~L~l~~~---~l~-----~lp~~l~~l~~L~~L~l~~~ 414 (466)
+..-+.|+.|+++++ .+. .+...+..-+.|..|+++.|
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 344445666666543 222 12233444455555555543
No 177
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.11 E-value=0.57 Score=44.19 Aligned_cols=139 Identities=15% Similarity=0.096 Sum_probs=77.4
Q ss_pred CeEEEEEeCCCChHh-------HHHHHhcCCCC--CCCcEEEEEeCChhhH--------hhcCcceEEEccCCChhhHHH
Q 012324 1 MKVLIVFDDVTCFSQ-------LESIIRSLDWL--TPVSRIIITTRNKQVL--------RNWGVRKIYEIEALENHHALE 63 (466)
Q Consensus 1 kr~LlvlDd~~~~~~-------~~~l~~~~~~~--~~gs~IlvTTR~~~v~--------~~~~~~~~~~l~~L~~~~~~~ 63 (466)
++.+||||++..... ...+....... ..+..+|.||+..... ..+. ...+.+++++.++..+
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~ 208 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRD 208 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHH
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHH
Confidence 367999999975432 22223222211 3455678888766321 1121 1489999999999999
Q ss_pred HHHHhh---cCCCCCCchHHHHHHHHHHHhC---CCceeehhhh-hhc--c---c---CCHHHHHHHHHHHHhccchhHH
Q 012324 64 LFSRHA---FKRNHPDVGYEKLSSKVMKYAQ---GVPLALKVLG-CFL--Y---E---REKEVSESAINKLQRILHPSIL 128 (466)
Q Consensus 64 Lf~~~~---~~~~~~~~~~~~~~~~i~~~c~---glPlai~~~~-~~l--~---~---~~~~~w~~~~~~l~~~~~~~~~ 128 (466)
++.+.+ +.+...++ +..+.+++.++ |.|-.+..+. ... . + -+.+.+..+..... .
T Consensus 209 il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~ 278 (387)
T 2v1u_A 209 ILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE-------R 278 (387)
T ss_dssp HHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------H
T ss_pred HHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------h
Confidence 999875 23222232 34566777777 9984333222 111 1 1 13444555544432 2
Q ss_pred HHHHHHHhcCchhhhhhhceee
Q 012324 129 EVLKISYDSLDNKEKNIFLDVA 150 (466)
Q Consensus 129 ~~l~~sy~~L~~~~~~~~~~~~ 150 (466)
..+.-++..|+...+..+..++
T Consensus 279 ~~~~~~~~~l~~~~~~~l~a~~ 300 (387)
T 2v1u_A 279 DRVSEVVRTLPLHAKLVLLSIM 300 (387)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHH
T ss_pred chHHHHHHcCCHHHHHHHHHHH
Confidence 2355567888887776666555
No 178
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.05 E-value=0.33 Score=44.69 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=65.0
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChhh-Hhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQV-LRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+.++|+||++.. +.++.+...+.+...+.++|+||....- ... ......+++++++.++..+++.+.+......
T Consensus 111 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~-- 188 (327)
T 1iqp_A 111 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-- 188 (327)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE--
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC--
Confidence 568999999753 4466666555444567788888876532 111 1112479999999999999998876432211
Q ss_pred hHHHHHHHHHHHhCCCceeehhhh
Q 012324 78 GYEKLSSKVMKYAQGVPLALKVLG 101 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~~~ 101 (466)
-..+....|++.++|.|..+..+.
T Consensus 189 ~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 189 LTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp ECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 124567788899999887655443
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.31 E-value=0.75 Score=43.21 Aligned_cols=98 Identities=10% Similarity=0.096 Sum_probs=63.6
Q ss_pred eEEEEEeCCCC--hHhHHHHHhcCCCCCCCcEEEEEeCChh-hHh-hcCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTC--FSQLESIIRSLDWLTPVSRIIITTRNKQ-VLR-NWGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~--~~~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|+||+.. .+..+.+...+.+...+..+|++|.+.. +.. .......+++++++.++..+++.+.+-.....
T Consensus 120 ~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-- 197 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-- 197 (373)
T ss_dssp SEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--
T ss_pred eEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--
Confidence 46899999864 3446666666554455667777776543 111 12223689999999999999998765321111
Q ss_pred hHHHHHHHHHHHhCCCceeehhhh
Q 012324 78 GYEKLSSKVMKYAQGVPLALKVLG 101 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~~~ 101 (466)
-..+....|++.++|.|..+..+.
T Consensus 198 ~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 198 HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 114556778999999998766543
No 180
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.75 E-value=1.6 Score=39.72 Aligned_cols=95 Identities=8% Similarity=0.093 Sum_probs=63.1
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChh-hHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|+|++... +..+.+...+.+...+.++|+||.... +... ......+++++++.++..+++.+.+......
T Consensus 103 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~-- 180 (319)
T 2chq_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-- 180 (319)
T ss_dssp CEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC--
T ss_pred ceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC--
Confidence 568999998643 446667666665556778888886653 1111 1223589999999999999998876432221
Q ss_pred hHHHHHHHHHHHhCCCceeeh
Q 012324 78 GYEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~ 98 (466)
-..+....+++.++|.+..+.
T Consensus 181 i~~~~l~~l~~~~~G~~r~~~ 201 (319)
T 2chq_A 181 ITEDGLEALIYISGGDFRKAI 201 (319)
T ss_dssp BCHHHHHHHHHTTTTCHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 124556778888888876544
No 181
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.42 E-value=0.65 Score=43.90 Aligned_cols=95 Identities=15% Similarity=0.155 Sum_probs=61.7
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCC----CCcEEEEEeCChhhHhhcC-------cceEEEccCCChhhHHHHHHHh
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLT----PVSRIIITTRNKQVLRNWG-------VRKIYEIEALENHHALELFSRH 68 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~----~gs~IlvTTR~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~ 68 (466)
+.+||||+++.. +....+...+.... .+..||++|+......... ....+.+++++.++..+++...
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~ 205 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDR 205 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 578999999653 34556655543321 4667888888765433322 1137999999999999999887
Q ss_pred hcC---CCCCCchHHHHHHHHHHHh---------CCCceeehh
Q 012324 69 AFK---RNHPDVGYEKLSSKVMKYA---------QGVPLALKV 99 (466)
Q Consensus 69 ~~~---~~~~~~~~~~~~~~i~~~c---------~glPlai~~ 99 (466)
+.. .... ..+....+++.+ +|.|..+..
T Consensus 206 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~ 245 (389)
T 1fnn_A 206 AKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAID 245 (389)
T ss_dssp HHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred HHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 532 2222 245677788888 687754443
No 182
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.73 E-value=0.63 Score=40.47 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=52.6
Q ss_pred EEEEEeCCCChH--h--HHHHHhcCCC-CCCCc-EEEEEeCChh---------hHhhcCcceEEEccCCChhhHHHHHHH
Q 012324 3 VLIVFDDVTCFS--Q--LESIIRSLDW-LTPVS-RIIITTRNKQ---------VLRNWGVRKIYEIEALENHHALELFSR 67 (466)
Q Consensus 3 ~LlvlDd~~~~~--~--~~~l~~~~~~-~~~gs-~IlvTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 67 (466)
-++|+||+.... . .+.+...+.. ...+. +||+||+... +...+.....+++++++.++..+++.+
T Consensus 106 ~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~ 185 (242)
T 3bos_A 106 DLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQR 185 (242)
T ss_dssp SEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHH
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHH
Confidence 478999986432 1 2222222110 01222 4777776431 122222236899999999999999988
Q ss_pred hhcCCCCCCchHHHHHHHHHHHhCCCceee
Q 012324 68 HAFKRNHPDVGYEKLSSKVMKYAQGVPLAL 97 (466)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai 97 (466)
.+...... -..+....+++.++|.+-.+
T Consensus 186 ~~~~~~~~--~~~~~~~~l~~~~~g~~r~l 213 (242)
T 3bos_A 186 RAAMRGLQ--LPEDVGRFLLNRMARDLRTL 213 (242)
T ss_dssp HHHHTTCC--CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHcCCC--CCHHHHHHHHHHccCCHHHH
Confidence 76322111 12455667888888766443
No 183
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=83.86 E-value=3.6 Score=38.02 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=62.9
Q ss_pred eEEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChh-hHhh-cCcceEEEccCCChhhHHHHHHHhhcCCCCCCc
Q 012324 2 KVLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEIEALENHHALELFSRHAFKRNHPDV 77 (466)
Q Consensus 2 r~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 77 (466)
+-++|+|++... +..+.+...+.+...+..+|++|.+.+ +... ..-...+++++++.++..+.+.+.. ..+
T Consensus 109 ~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~- 183 (334)
T 1a5t_A 109 AKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TMS- 183 (334)
T ss_dssp CEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CCC-
T ss_pred cEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CCC-
Confidence 457899998753 346667766665556677777777653 2221 2233589999999999999988765 111
Q ss_pred hHHHHHHHHHHHhCCCceeehhhh
Q 012324 78 GYEKLSSKVMKYAQGVPLALKVLG 101 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~~~ 101 (466)
.+.+..+++.++|.|..+..+.
T Consensus 184 --~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 184 --QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp --HHHHHHHHHHTTTCHHHHHHTT
T ss_pred --HHHHHHHHHHcCCCHHHHHHHh
Confidence 3455778899999997654433
No 184
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=76.51 E-value=5.2 Score=36.44 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=58.3
Q ss_pred EEEEEeCCCChH--hHHHHHhcCCCCC------------------CCcEEEEEeCChhhH-hhc--CcceEEEccCCChh
Q 012324 3 VLIVFDDVTCFS--QLESIIRSLDWLT------------------PVSRIIITTRNKQVL-RNW--GVRKIYEIEALENH 59 (466)
Q Consensus 3 ~LlvlDd~~~~~--~~~~l~~~~~~~~------------------~gs~IlvTTR~~~v~-~~~--~~~~~~~l~~L~~~ 59 (466)
.+++||++.... ....+...+.+.. .+.++|.||...... ... .....+.+++++.+
T Consensus 92 ~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~ 171 (324)
T 1hqc_A 92 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPE 171 (324)
T ss_dssp CEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHH
T ss_pred CEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHH
Confidence 478999997643 3344433222110 234566666544211 111 11258999999999
Q ss_pred hHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCceeehhhh
Q 012324 60 HALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVPLALKVLG 101 (466)
Q Consensus 60 ~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 101 (466)
|..+++.+.+...... -..+....+++.++|.|-.+..+.
T Consensus 172 e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l 211 (324)
T 1hqc_A 172 ELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLF 211 (324)
T ss_dssp HHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHH
Confidence 9999998876432221 124567788999999997766554
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=76.09 E-value=7.4 Score=34.47 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=50.0
Q ss_pred eEEEEEeCCCCh------------HhHHHHHhcCCC---CCCCcEEEEEeCChhhHhhc---C-cceEEEccCCCh-hhH
Q 012324 2 KVLIVFDDVTCF------------SQLESIIRSLDW---LTPVSRIIITTRNKQVLRNW---G-VRKIYEIEALEN-HHA 61 (466)
Q Consensus 2 r~LlvlDd~~~~------------~~~~~l~~~~~~---~~~gs~IlvTTR~~~v~~~~---~-~~~~~~l~~L~~-~~~ 61 (466)
.-+|+||++... ...+.+...+.. ......||.||...+..... . -...++++++++ ++.
T Consensus 125 ~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i 204 (272)
T 1d2n_A 125 LSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQL 204 (272)
T ss_dssp EEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHH
T ss_pred CcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHH
Confidence 468999997532 123334443332 22334567777777543321 1 135789999998 666
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCce
Q 012324 62 LELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVPL 95 (466)
Q Consensus 62 ~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 95 (466)
..++.+.. ..+ .+....+++.+.|.++
T Consensus 205 ~~i~~~~~----~~~---~~~~~~l~~~~~g~~~ 231 (272)
T 1d2n_A 205 LEALELLG----NFK---DKERTTIAQQVKGKKV 231 (272)
T ss_dssp HHHHHHHT----CSC---HHHHHHHHHHHTTSEE
T ss_pred HHHHHhcC----CCC---HHHHHHHHHHhcCCCc
Confidence 66666532 111 3456778888888543
No 186
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=71.42 E-value=12 Score=34.44 Aligned_cols=96 Identities=10% Similarity=-0.027 Sum_probs=63.7
Q ss_pred eEEEEEeCCCC---hHhHHHHHhcCCCCCCCcEEEEEeCC-------hhhHhhc-CcceEEEccCCChhhHHHHHHHhhc
Q 012324 2 KVLIVFDDVTC---FSQLESIIRSLDWLTPVSRIIITTRN-------KQVLRNW-GVRKIYEIEALENHHALELFSRHAF 70 (466)
Q Consensus 2 r~LlvlDd~~~---~~~~~~l~~~~~~~~~gs~IlvTTR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~ 70 (466)
+=++|+|++.. .+.++.+...+.+-..++.+|++|.+ ..+.... .....++..+++.++....+.+.+-
T Consensus 77 ~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp CEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHH
Confidence 34788998854 45678888777666677878777643 2343332 3346899999999999888877663
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCceeehh
Q 012324 71 KRNHPDVGYEKLSSKVMKYAQGVPLALKV 99 (466)
Q Consensus 71 ~~~~~~~~~~~~~~~i~~~c~glPlai~~ 99 (466)
..+- .-..+.+..+++.++|-+.++..
T Consensus 157 ~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 157 QLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 2221 11245677788888887766554
No 187
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=70.72 E-value=3.5 Score=39.78 Aligned_cols=90 Identities=9% Similarity=0.137 Sum_probs=52.1
Q ss_pred EEEEEeCCCChH----hHHHHHhcCCC-CCCCcEEEEEeCCh---------hhHhhcCcceEEEccCCChhhHHHHHHHh
Q 012324 3 VLIVFDDVTCFS----QLESIIRSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEIEALENHHALELFSRH 68 (466)
Q Consensus 3 ~LlvlDd~~~~~----~~~~l~~~~~~-~~~gs~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 68 (466)
-+|+|||+.... .-+.+...+.. ...|..||+||... .+...+..+.++.+++++.++-..++.+.
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 479999995322 22233222211 13567788888763 22333433467899999999999999887
Q ss_pred hcC-CCCCCchHHHHHHHHHHHhCCCce
Q 012324 69 AFK-RNHPDVGYEKLSSKVMKYAQGVPL 95 (466)
Q Consensus 69 ~~~-~~~~~~~~~~~~~~i~~~c~glPl 95 (466)
+-. +...+ .+....|++.+.|.+-
T Consensus 276 ~~~~~~~i~---~e~l~~la~~~~gn~R 300 (440)
T 2z4s_A 276 LEIEHGELP---EEVLNFVAENVDDNLR 300 (440)
T ss_dssp HHHHTCCCC---TTHHHHHHHHCCSCHH
T ss_pred HHHcCCCCC---HHHHHHHHHhcCCCHH
Confidence 632 11122 2234556666666553
No 188
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.21 E-value=9.2 Score=35.28 Aligned_cols=95 Identities=6% Similarity=0.132 Sum_probs=57.8
Q ss_pred EEEEEeCCCChH--hHHHHHhcCCCCCCCcEEEEEeCChh-hHhh-cCcceEEEccCCChhhHHHHHHHhhcCCC-CCCc
Q 012324 3 VLIVFDDVTCFS--QLESIIRSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEIEALENHHALELFSRHAFKRN-HPDV 77 (466)
Q Consensus 3 ~LlvlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~ 77 (466)
-++|+|++...+ ..+.+...+.+...+..+|++|.+.. +... ..-...+++++++.++..+.+.+.+-... ..+
T Consensus 136 ~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 214 (354)
T 1sxj_E 136 KCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE- 214 (354)
T ss_dssp EEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-
T ss_pred eEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-
Confidence 388999987533 34444444333344677877776642 2111 12236899999999999999988763211 111
Q ss_pred hHHHHHHHHHHHhCCCceeehh
Q 012324 78 GYEKLSSKVMKYAQGVPLALKV 99 (466)
Q Consensus 78 ~~~~~~~~i~~~c~glPlai~~ 99 (466)
..+.+..|++.++|.+-.+..
T Consensus 215 -~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 215 -TKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp -CSHHHHHHHHHHTTCHHHHHH
T ss_pred -cHHHHHHHHHHcCCCHHHHHH
Confidence 024556788888887755443
No 189
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.99 E-value=16 Score=35.90 Aligned_cols=90 Identities=10% Similarity=0.119 Sum_probs=52.5
Q ss_pred eEEEEEeCCCChH-----hHHHHHhcCCCCCCCcEEEEEeCChh---hHhhcCcceEEEccCCChhhHHHHHHHhhcCCC
Q 012324 2 KVLIVFDDVTCFS-----QLESIIRSLDWLTPVSRIIITTRNKQ---VLRNWGVRKIYEIEALENHHALELFSRHAFKRN 73 (466)
Q Consensus 2 r~LlvlDd~~~~~-----~~~~l~~~~~~~~~gs~IlvTTR~~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 73 (466)
+.+|+||++.... .+..+...+.. .+..||+++.+.. +.........+.+++++.++..+.+.+.+....
T Consensus 149 ~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~ 226 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREK 226 (516)
T ss_dssp SEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 4689999985421 13444433322 2334666655432 222222345899999999999999887764322
Q ss_pred -CCCchHHHHHHHHHHHhCCCcee
Q 012324 74 -HPDVGYEKLSSKVMKYAQGVPLA 96 (466)
Q Consensus 74 -~~~~~~~~~~~~i~~~c~glPla 96 (466)
..+ .+....|++.++|-+-.
T Consensus 227 ~~i~---~~~l~~la~~s~GdiR~ 247 (516)
T 1sxj_A 227 FKLD---PNVIDRLIQTTRGDIRQ 247 (516)
T ss_dssp CCCC---TTHHHHHHHHTTTCHHH
T ss_pred CCCC---HHHHHHHHHHcCCcHHH
Confidence 222 23456788888885433
No 190
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.63 E-value=13 Score=34.23 Aligned_cols=96 Identities=11% Similarity=0.200 Sum_probs=59.6
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCChh-hHhhc-CcceEEEccCCChhhHHHHHHHhhcCCCCCCch
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRNKQ-VLRNW-GVRKIYEIEALENHHALELFSRHAFKRNHPDVG 78 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 78 (466)
-++++|++... ...+.+...+.+.....++|++|.... +.... .-...+++++++.++....+.+.+...... -
T Consensus 135 ~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i 212 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVK--C 212 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC--C
T ss_pred eEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC--C
Confidence 38899998543 334555544443345567777775543 11111 112478999999999999998876432211 1
Q ss_pred HHHHHHHHHHHhCCCceeehhh
Q 012324 79 YEKLSSKVMKYAQGVPLALKVL 100 (466)
Q Consensus 79 ~~~~~~~i~~~c~glPlai~~~ 100 (466)
..+..+.|++.++|.|-.+..+
T Consensus 213 ~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 213 DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CHHHHHHHHHHTSSCHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHH
Confidence 1456778899999988764433
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=60.99 E-value=35 Score=29.48 Aligned_cols=93 Identities=13% Similarity=0.190 Sum_probs=50.0
Q ss_pred eEEEEEeCCCCh--------------H---hHHHHHhcCCC--CCCCcEEEEEeCChhhHhh--c---CcceEEEccCCC
Q 012324 2 KVLIVFDDVTCF--------------S---QLESIIRSLDW--LTPVSRIIITTRNKQVLRN--W---GVRKIYEIEALE 57 (466)
Q Consensus 2 r~LlvlDd~~~~--------------~---~~~~l~~~~~~--~~~gs~IlvTTR~~~v~~~--~---~~~~~~~l~~L~ 57 (466)
..+|+||++... . ....+...+.. ...+..||.||........ . .....+.++..+
T Consensus 99 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~ 178 (262)
T 2qz4_A 99 PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178 (262)
T ss_dssp SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCC
T ss_pred CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcC
Confidence 368999999753 1 12233322211 1234566667755432111 1 123578899999
Q ss_pred hhhHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCce
Q 012324 58 NHHALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVPL 95 (466)
Q Consensus 58 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 95 (466)
.++-.+++.+.+.... ...........+++.+.|.+-
T Consensus 179 ~~~r~~il~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 179 LQERREIFEQHLKSLK-LTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp HHHHHHHHHHHHHHTT-CCBTHHHHHHHHHHTCTTCCH
T ss_pred HHHHHHHHHHHHHhCC-CCcchhhHHHHHHHHCCCCCH
Confidence 9999999988763221 122222234677777777653
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=54.20 E-value=19 Score=32.24 Aligned_cols=65 Identities=8% Similarity=0.097 Sum_probs=44.0
Q ss_pred EEEEeCCC-----------ChHhHHHHHhcCCCCCCCcEEEEEeCChhh----------HhhcCcceEEEccCCChhhHH
Q 012324 4 LIVFDDVT-----------CFSQLESIIRSLDWLTPVSRIIITTRNKQV----------LRNWGVRKIYEIEALENHHAL 62 (466)
Q Consensus 4 LlvlDd~~-----------~~~~~~~l~~~~~~~~~gs~IlvTTR~~~v----------~~~~~~~~~~~l~~L~~~~~~ 62 (466)
+|+||++. .......+...+.+...+..||.||..... ...+ ...+.+++++.++-.
T Consensus 133 vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~ 210 (309)
T 3syl_A 133 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELF 210 (309)
T ss_dssp EEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHH
T ss_pred EEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHH
Confidence 78999997 333455555555444556678888765422 2222 268999999999999
Q ss_pred HHHHHhhc
Q 012324 63 ELFSRHAF 70 (466)
Q Consensus 63 ~Lf~~~~~ 70 (466)
+++.+.+-
T Consensus 211 ~il~~~l~ 218 (309)
T 3syl_A 211 EIAGHMLD 218 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988763
No 193
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=52.62 E-value=23 Score=32.18 Aligned_cols=87 Identities=14% Similarity=0.216 Sum_probs=49.8
Q ss_pred EEEEEeCCCChH---h-HHHHHhcCCC-CCCCcEEEEEeCCh---------hhHhhcCcceEEEccCCChhhHHHHHHHh
Q 012324 3 VLIVFDDVTCFS---Q-LESIIRSLDW-LTPVSRIIITTRNK---------QVLRNWGVRKIYEIEALENHHALELFSRH 68 (466)
Q Consensus 3 ~LlvlDd~~~~~---~-~~~l~~~~~~-~~~gs~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 68 (466)
-+|+|||+.... . .+.+...+.. ...|..||+||... .+...+....++++++ +.++-.+++.+.
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEK 178 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHH
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHH
Confidence 478999985432 1 2222222110 12455788887643 2222233346799999 999999999887
Q ss_pred hcCCC-CCCchHHHHHHHHHHHhCCCc
Q 012324 69 AFKRN-HPDVGYEKLSSKVMKYAQGVP 94 (466)
Q Consensus 69 ~~~~~-~~~~~~~~~~~~i~~~c~glP 94 (466)
+.... ..+ .+....|++.+ |..
T Consensus 179 ~~~~~~~l~---~~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 179 LKEFNLELR---KEVIDYLLENT-KNV 201 (324)
T ss_dssp HHHTTCCCC---HHHHHHHHHHC-SSH
T ss_pred HHhcCCCCC---HHHHHHHHHhC-CCH
Confidence 64222 222 34556677777 654
No 194
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=47.00 E-value=56 Score=28.69 Aligned_cols=62 Identities=26% Similarity=0.333 Sum_probs=37.1
Q ss_pred CCcEEEEEeCChhhHhh--c---CcceEEEccCCChhhHHHHHHHhhcCCCC-CCchHHHHHHHHHHHhCCC
Q 012324 28 PVSRIIITTRNKQVLRN--W---GVRKIYEIEALENHHALELFSRHAFKRNH-PDVGYEKLSSKVMKYAQGV 93 (466)
Q Consensus 28 ~gs~IlvTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~c~gl 93 (466)
.+..||.||...+.... . .....+.++..+.++-.++++..+..... .+.. ...+++...|.
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~ 222 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGC 222 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTC
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCC
Confidence 45667777775532211 1 22347999999999999999887643221 1112 34556666664
No 195
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=46.00 E-value=39 Score=31.09 Aligned_cols=89 Identities=10% Similarity=0.088 Sum_probs=53.4
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCCCCcEEEEEeCC-----------------hhhHhhcCcceEEEccCCChhhHHH
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLTPVSRIIITTRN-----------------KQVLRNWGVRKIYEIEALENHHALE 63 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTTR~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~ 63 (466)
.+|+||++... +..+.+...+.+.... .++++|.. ..+...+ ..+.+++++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHH
Confidence 48999999654 3456666665543333 34444431 1222222 358999999999999
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHhC-CCceee
Q 012324 64 LFSRHAFKRNHPDVGYEKLSSKVMKYAQ-GVPLAL 97 (466)
Q Consensus 64 Lf~~~~~~~~~~~~~~~~~~~~i~~~c~-glPlai 97 (466)
++.+.+-..... -..+....|++.+. |.|-.+
T Consensus 267 il~~~~~~~~~~--~~~~~l~~l~~~~~~G~~r~~ 299 (368)
T 3uk6_A 267 ILRIRCEEEDVE--MSEDAYTVLTRIGLETSLRYA 299 (368)
T ss_dssp HHHHHHHHTTCC--BCHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHHhcCCCHHHH
Confidence 998876432211 12455677788787 666443
No 196
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=44.77 E-value=25 Score=31.89 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=50.9
Q ss_pred eEEEEEeCCCChH---hHHHHHhcCCCCCCCcEEEEEeCChhhH-hhc-CcceEEEccCCChhhHHHHHHH-------hh
Q 012324 2 KVLIVFDDVTCFS---QLESIIRSLDWLTPVSRIIITTRNKQVL-RNW-GVRKIYEIEALENHHALELFSR-------HA 69 (466)
Q Consensus 2 r~LlvlDd~~~~~---~~~~l~~~~~~~~~gs~IlvTTR~~~v~-~~~-~~~~~~~l~~L~~~~~~~Lf~~-------~~ 69 (466)
+-++++|++.... ..+.+...+.....+.++|+||....-. ... .-...+++++++.++-.+++.. .+
T Consensus 106 ~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~ 185 (324)
T 3u61_B 106 QKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEIC 185 (324)
T ss_dssp EEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5689999998654 4455544433223456788888765311 000 1124799999998885443322 22
Q ss_pred cC-CCCCCchHHHHHHHHHHHhCCCcee
Q 012324 70 FK-RNHPDVGYEKLSSKVMKYAQGVPLA 96 (466)
Q Consensus 70 ~~-~~~~~~~~~~~~~~i~~~c~glPla 96 (466)
.. +...++ .+....+++.++|-+-.
T Consensus 186 ~~~~~~~~~--~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 186 KHEGIAIAD--MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HHHTCCBSC--HHHHHHHHHHTCSCTTH
T ss_pred HHcCCCCCc--HHHHHHHHHhCCCCHHH
Confidence 11 111111 25566677777776543
No 197
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=43.97 E-value=1.1e+02 Score=27.51 Aligned_cols=89 Identities=9% Similarity=-0.000 Sum_probs=50.0
Q ss_pred EEEEEeCCCChH-------------hHHHHHhc---CCCCCCCcEEEEEeCChhhHhh-c--CcceEEEccCCChhhHHH
Q 012324 3 VLIVFDDVTCFS-------------QLESIIRS---LDWLTPVSRIIITTRNKQVLRN-W--GVRKIYEIEALENHHALE 63 (466)
Q Consensus 3 ~LlvlDd~~~~~-------------~~~~l~~~---~~~~~~gs~IlvTTR~~~v~~~-~--~~~~~~~l~~L~~~~~~~ 63 (466)
.+|+||++.... ....+... +.....+..||.||...+.... + .....+.++..+.++-.+
T Consensus 112 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~ 191 (322)
T 3eie_A 112 SIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 191 (322)
T ss_dssp EEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHH
T ss_pred eEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHH
Confidence 688999986321 12233222 2223445556667765432110 0 123578889899999999
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 012324 64 LFSRHAFKRNHPDVGYEKLSSKVMKYAQGV 93 (466)
Q Consensus 64 Lf~~~~~~~~~~~~~~~~~~~~i~~~c~gl 93 (466)
+++..+........ ......|++.+.|.
T Consensus 192 il~~~~~~~~~~~~--~~~l~~la~~t~g~ 219 (322)
T 3eie_A 192 MFEINVGDTPCVLT--KEDYRTLGAMTEGY 219 (322)
T ss_dssp HHHHHHTTCCCCCC--HHHHHHHHHTTTTC
T ss_pred HHHHHhccCCCCCC--HHHHHHHHHHcCCC
Confidence 99987743222111 33456677777774
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=43.95 E-value=1.5e+02 Score=27.14 Aligned_cols=88 Identities=9% Similarity=0.027 Sum_probs=48.8
Q ss_pred eEEEEEeCCCChH-------------hHHHHH---hcCCCCCCCcEEEEEeCChh-----hHhhcCcceEEEccCCChhh
Q 012324 2 KVLIVFDDVTCFS-------------QLESII---RSLDWLTPVSRIIITTRNKQ-----VLRNWGVRKIYEIEALENHH 60 (466)
Q Consensus 2 r~LlvlDd~~~~~-------------~~~~l~---~~~~~~~~gs~IlvTTR~~~-----v~~~~~~~~~~~l~~L~~~~ 60 (466)
..+|+||++.... ....+. ..+.....+..||.||...+ +.. .....+.++..+.++
T Consensus 144 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 144 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAA 221 (355)
T ss_dssp SEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHH
T ss_pred CeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHH
Confidence 4689999986421 022222 22222234455665665442 222 234578899999999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 012324 61 ALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGV 93 (466)
Q Consensus 61 ~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~gl 93 (466)
-.+++............ ......|++.+.|.
T Consensus 222 r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 222 RTTMFEINVGDTPSVLT--KEDYRTLGAMTEGY 252 (355)
T ss_dssp HHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCC
Confidence 99999887633221111 33456677788775
No 199
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=38.41 E-value=22 Score=18.15 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=15.0
Q ss_pred cCCCCCCCcEEEEEeCChh
Q 012324 22 SLDWLTPVSRIIITTRNKQ 40 (466)
Q Consensus 22 ~~~~~~~gs~IlvTTR~~~ 40 (466)
++|....|.-|+|||...+
T Consensus 3 PlPa~eeGaT~lVtTKT~d 21 (26)
T 2gkw_B 3 PVPATELGSTELVTTKTAG 21 (26)
T ss_pred cccccccCceEEEEeccCC
Confidence 4667788999999997654
No 200
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=36.81 E-value=2.3e+02 Score=25.36 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=49.3
Q ss_pred eEEEEEeCCCChH-------------hHHHHHhc---CCCCCCCcEEEEEeCChhhHhh---cCcceEEEccCCChhhHH
Q 012324 2 KVLIVFDDVTCFS-------------QLESIIRS---LDWLTPVSRIIITTRNKQVLRN---WGVRKIYEIEALENHHAL 62 (466)
Q Consensus 2 r~LlvlDd~~~~~-------------~~~~l~~~---~~~~~~gs~IlvTTR~~~v~~~---~~~~~~~~l~~L~~~~~~ 62 (466)
..+|+||++.... ....+... +.....+-.||.||...+.... -.....+.++..+.++-.
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~ 185 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARA 185 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHH
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHH
Confidence 4689999996431 11222222 2112334445556654421110 123357889989999989
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 012324 63 ELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVP 94 (466)
Q Consensus 63 ~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glP 94 (466)
++++.......... .......|++.+.|..
T Consensus 186 ~il~~~l~~~~~~l--~~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 186 AMFKLHLGTTQNSL--TEADFRELGRKTDGYS 215 (322)
T ss_dssp HHHHHHHTTCCBCC--CHHHHHHHHHTCTTCC
T ss_pred HHHHHHHhcCCCCC--CHHHHHHHHHHcCCCC
Confidence 99988763222111 1344567788887764
No 201
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.53 E-value=1.2e+02 Score=27.34 Aligned_cols=93 Identities=9% Similarity=0.133 Sum_probs=55.2
Q ss_pred eEEEEEeCCCC--hHhHHHHHhcCCCCCCCcEEEEEeCChh-hHhh-cCcceEEEccCCChhhHHHHHHHhhcCCC-CCC
Q 012324 2 KVLIVFDDVTC--FSQLESIIRSLDWLTPVSRIIITTRNKQ-VLRN-WGVRKIYEIEALENHHALELFSRHAFKRN-HPD 76 (466)
Q Consensus 2 r~LlvlDd~~~--~~~~~~l~~~~~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~ 76 (466)
+-++|+|++.. .+..+.+...+.+.....+++++|.... +... ..-...+++.+++.++..+.+.+.+-... ..+
T Consensus 111 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~ 190 (340)
T 1sxj_C 111 FKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS 190 (340)
T ss_dssp CEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 34788998853 3344555444433344566777765442 1111 12234789999999999888877653222 122
Q ss_pred chHHHHHHHHHHHhCCCceee
Q 012324 77 VGYEKLSSKVMKYAQGVPLAL 97 (466)
Q Consensus 77 ~~~~~~~~~i~~~c~glPlai 97 (466)
.+..+.+++.++|-+-.+
T Consensus 191 ---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 191 ---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp ---HHHHHHHHHHHTTCHHHH
T ss_pred ---HHHHHHHHHHcCCCHHHH
Confidence 445677888888876543
No 202
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=33.14 E-value=76 Score=30.38 Aligned_cols=96 Identities=13% Similarity=0.193 Sum_probs=52.5
Q ss_pred eEEEEEeCCCChH--hHHHHHhcCCCCCCCcEEEEEeCChh--h-HhhcCcceEEEccCCChhhHHHHHHHhhcCCC---
Q 012324 2 KVLIVFDDVTCFS--QLESIIRSLDWLTPVSRIIITTRNKQ--V-LRNWGVRKIYEIEALENHHALELFSRHAFKRN--- 73 (466)
Q Consensus 2 r~LlvlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~~--v-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~--- 73 (466)
+.+|+||++.... +.+.+...+.+ +.-.-|..||.+.. + .....-..++.+++++.++...++.+..-...
T Consensus 107 ~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~ 185 (447)
T 3pvs_A 107 RTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGY 185 (447)
T ss_dssp CEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSS
T ss_pred CcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhh
Confidence 5689999997543 34444444433 22222333555542 1 11122235889999999999999988764311
Q ss_pred --CCCchHHHHHHHHHHHhCCCceeeh
Q 012324 74 --HPDVGYEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 74 --~~~~~~~~~~~~i~~~c~glPlai~ 98 (466)
....-..+....+++.++|.+-.+.
T Consensus 186 ~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 186 GGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred ccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 1111224456677777877655433
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=33.01 E-value=37 Score=30.63 Aligned_cols=67 Identities=12% Similarity=0.202 Sum_probs=47.1
Q ss_pred eEEEEEeCCCC--hHhHHHHHhcCCCCCCCcEEEEEeCCh-hhHhhcCcceEEEccCCChhhHHHHHHHhh
Q 012324 2 KVLIVFDDVTC--FSQLESIIRSLDWLTPVSRIIITTRNK-QVLRNWGVRKIYEIEALENHHALELFSRHA 69 (466)
Q Consensus 2 r~LlvlDd~~~--~~~~~~l~~~~~~~~~gs~IlvTTR~~-~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 69 (466)
+=++|+|++.. .+..+.|...+.+....+.+|++|.+. .+....... .++++++++++..+.+.+..
T Consensus 83 ~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 83 RKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred ceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 34788999864 345677777766556677777777554 333333334 89999999999999888775
No 204
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.51 E-value=57 Score=23.68 Aligned_cols=42 Identities=14% Similarity=0.025 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCcEEEcCCCCCCcccCcccccCcccCEEecCCC
Q 012324 256 NPMLMPRLNNLVILNLRSGKSLKSLPSGIFNLEFLTKLDLSGC 298 (466)
Q Consensus 256 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 298 (466)
....|.+|..|+.+.|..+ ....-...|.+|.+|+.+.+.+.
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3456889999999999776 44444556889999999988874
No 205
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=29.83 E-value=89 Score=29.25 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=27.3
Q ss_pred EEEEeCCCCh---HhHHHHHhcCCCCCCCcEEEEEeCChhhHhhcCcceEEEc
Q 012324 4 LIVFDDVTCF---SQLESIIRSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEI 53 (466)
Q Consensus 4 LlvlDd~~~~---~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l 53 (466)
+||||++... .....+...+.....|.-||++|-+..++.. ++.++.|
T Consensus 318 ~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~--~d~i~~l 368 (415)
T 4aby_A 318 SVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--AHHHYKV 368 (415)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh--cCeEEEE
Confidence 7899998643 2233333332222246678888888888754 3344444
No 206
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=28.08 E-value=43 Score=28.00 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=28.2
Q ss_pred EEEEeCCCCh-----HhHHHHHhcCCCCCCCcEEEEEeCChhhHhhcCcceEEEccCC
Q 012324 4 LIVFDDVTCF-----SQLESIIRSLDWLTPVSRIIITTRNKQVLRNWGVRKIYEIEAL 56 (466)
Q Consensus 4 LlvlDd~~~~-----~~~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l~~L 56 (466)
|+|||++... -..+.+...+.......-||+|+|...-.-.--++.+-+|...
T Consensus 123 lvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 123 MVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp EEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred EEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 7999988321 1123333333333456679999999732211123345555543
No 207
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=27.79 E-value=60 Score=29.41 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=54.3
Q ss_pred EEEEEeCCCCh--HhHHHHHhcCCCCC------------------CCcEEEEEeCChhhH-hh-c-CcceEEEccCCChh
Q 012324 3 VLIVFDDVTCF--SQLESIIRSLDWLT------------------PVSRIIITTRNKQVL-RN-W-GVRKIYEIEALENH 59 (466)
Q Consensus 3 ~LlvlDd~~~~--~~~~~l~~~~~~~~------------------~gs~IlvTTR~~~v~-~~-~-~~~~~~~l~~L~~~ 59 (466)
-.|+||++... +....+...+.+.. +.-.+|.+|...... .. . .....+.+++++.+
T Consensus 108 ~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~ 187 (338)
T 3pfi_A 108 DILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDS 187 (338)
T ss_dssp CEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHH
T ss_pred CEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHH
Confidence 47899998754 23444443332211 123556565543221 11 1 12368999999999
Q ss_pred hHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCceeeh
Q 012324 60 HALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVPLALK 98 (466)
Q Consensus 60 ~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 98 (466)
+..+++.+.+-.... .-..+....+++.+.|.|-.+.
T Consensus 188 e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 188 ELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp HHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHH
T ss_pred HHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHH
Confidence 999999887632211 1224566778888888884443
No 208
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=27.11 E-value=1.4e+02 Score=28.43 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=55.2
Q ss_pred EEEEeCCC--ChHhHHHHHhcCCCCCCCcEEEEEe---------CC----h-----hhHhhcCcceEEEccCCChhhHHH
Q 012324 4 LIVFDDVT--CFSQLESIIRSLDWLTPVSRIIITT---------RN----K-----QVLRNWGVRKIYEIEALENHHALE 63 (466)
Q Consensus 4 LlvlDd~~--~~~~~~~l~~~~~~~~~gs~IlvTT---------R~----~-----~v~~~~~~~~~~~l~~L~~~~~~~ 63 (466)
.+++|++. +.+..+.|...+.+.... .+|+.| .+ . .+.+.+ ..+.+++++.++..+
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMKQ 373 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHHH
Confidence 78999885 445578887776654444 344344 21 1 122222 357999999999999
Q ss_pred HHHHhhcC-CCCCCchHHHHHHHHHHHh-CCCceeehhh
Q 012324 64 LFSRHAFK-RNHPDVGYEKLSSKVMKYA-QGVPLALKVL 100 (466)
Q Consensus 64 Lf~~~~~~-~~~~~~~~~~~~~~i~~~c-~glPlai~~~ 100 (466)
++.+.+-. +...+ .+....|++.+ +|-|..+..+
T Consensus 374 iL~~~~~~~~~~~~---~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 374 IIKIRAQTEGINIS---EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHTCCBC---HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHhCCCCC---HHHHHHHHHHccCCCHHHHHHH
Confidence 99887621 11222 44566777777 7777654433
No 209
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=27.11 E-value=4e+02 Score=25.11 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=50.7
Q ss_pred eEEEEEeCCCCh-------------HhHHHHHhcCCC---CCCCcEEEEEeCChhhHhh---cCcceEEEccCCChhhHH
Q 012324 2 KVLIVFDDVTCF-------------SQLESIIRSLDW---LTPVSRIIITTRNKQVLRN---WGVRKIYEIEALENHHAL 62 (466)
Q Consensus 2 r~LlvlDd~~~~-------------~~~~~l~~~~~~---~~~gs~IlvTTR~~~v~~~---~~~~~~~~l~~L~~~~~~ 62 (466)
..+|+||++... .....+...+.. ...+..||.||........ -.....+.++..+.++-.
T Consensus 228 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~ 307 (444)
T 2zan_A 228 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARA 307 (444)
T ss_dssp SEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHH
T ss_pred CeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHH
Confidence 368999999743 112333333322 1344556667755422111 122357888888888888
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 012324 63 ELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVP 94 (466)
Q Consensus 63 ~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glP 94 (466)
.+|+.......... .......|++.+.|..
T Consensus 308 ~il~~~l~~~~~~l--~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 308 AMFRLHLGSTQNSL--TEADFQELGRKTDGYS 337 (444)
T ss_dssp HHHHHHHTTSCEEC--CHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhcCCCCC--CHHHHHHHHHHcCCCC
Confidence 99988763222111 1334566778888754
No 210
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=26.41 E-value=20 Score=28.95 Aligned_cols=62 Identities=6% Similarity=0.034 Sum_probs=34.0
Q ss_pred eEEEEEeCCCChH---------h-HHHHHhcCCCCCCCcEEEEEeCChhhHhhc-------CcceEEEccCCChhhHHHH
Q 012324 2 KVLIVFDDVTCFS---------Q-LESIIRSLDWLTPVSRIIITTRNKQVLRNW-------GVRKIYEIEALENHHALEL 64 (466)
Q Consensus 2 r~LlvlDd~~~~~---------~-~~~l~~~~~~~~~gs~IlvTTR~~~v~~~~-------~~~~~~~l~~L~~~~~~~L 64 (466)
+.+|||||+.... + ...+...+. ..+..+|.||......... .--..+.+++++.++..++
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp TEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTT
T ss_pred CeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHH
Confidence 4689999996531 1 222332222 1234567777665432111 1123688999988887665
Q ss_pred H
Q 012324 65 F 65 (466)
Q Consensus 65 f 65 (466)
+
T Consensus 194 l 194 (195)
T 1jbk_A 194 L 194 (195)
T ss_dssp C
T ss_pred h
Confidence 4
No 211
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=25.84 E-value=3.9e+02 Score=24.52 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=30.2
Q ss_pred eEEEccCCChhhHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 012324 49 KIYEIEALENHHALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVP 94 (466)
Q Consensus 49 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glP 94 (466)
..+.++..+.++-.+++...+-...... ..+....+++.+.|..
T Consensus 275 ~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 275 KRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYS 318 (389)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCC
T ss_pred eEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCC
Confidence 5788999999999999988763322111 1345567888888754
No 212
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.44 E-value=1.1e+02 Score=22.10 Aligned_cols=36 Identities=6% Similarity=-0.082 Sum_probs=14.2
Q ss_pred cCCCCCCCEEEecCCCCCCCCCcccCCCCCCcEEEcc
Q 012324 353 LCKLKSLKVLNLCGCSNLQRLPECLGQLSSPIILNLA 389 (466)
Q Consensus 353 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 389 (466)
+..+.+|+.+.|.. +....-...|.+|.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEc
Confidence 33444444444433 2222223344444444444443
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=22.12 E-value=70 Score=25.05 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=17.4
Q ss_pred EEEEeCCCChH--h---HHHHHhcCCCCCCCc-EEEEEeCC
Q 012324 4 LIVFDDVTCFS--Q---LESIIRSLDWLTPVS-RIIITTRN 38 (466)
Q Consensus 4 LlvlDd~~~~~--~---~~~l~~~~~~~~~gs-~IlvTTR~ 38 (466)
++||||+.... + ...+..... ..|. +||+||+.
T Consensus 86 lLilDE~~~~~~~~~~~l~~li~~~~--~~g~~~iiits~~ 124 (149)
T 2kjq_A 86 YLAVDQVEKLGNEEQALLFSIFNRFR--NSGKGFLLLGSEY 124 (149)
T ss_dssp EEEEESTTCCCSHHHHHHHHHHHHHH--HHTCCEEEEEESS
T ss_pred EEEEeCccccChHHHHHHHHHHHHHH--HcCCcEEEEECCC
Confidence 78999986532 1 222222222 2233 48888874
No 214
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=21.71 E-value=3.1e+02 Score=24.88 Aligned_cols=44 Identities=11% Similarity=-0.007 Sum_probs=29.6
Q ss_pred eEEEccCCChhhHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 012324 49 KIYEIEALENHHALELFSRHAFKRNHPDVGYEKLSSKVMKYAQGVP 94 (466)
Q Consensus 49 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~glP 94 (466)
..+.++..+.++..+++...+-.....- ..+....|++.+.|..
T Consensus 244 ~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~l~~la~~t~G~s 287 (357)
T 3d8b_A 244 KRLYIPLPEASARKQIVINLMSKEQCCL--SEEEIEQIVQQSDAFS 287 (357)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTSCBCC--CHHHHHHHHHHTTTCC
T ss_pred eEEEeCCcCHHHHHHHHHHHHhhcCCCc--cHHHHHHHHHHcCCCC
Confidence 5788999999999998887763322111 1345667888888753
Done!