Query 012325
Match_columns 466
No_of_seqs 363 out of 1978
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 01:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 5E-115 1E-119 936.3 41.4 457 1-458 257-716 (759)
2 PLN02993 lupeol synthase 100.0 3E-113 6E-118 924.7 41.4 457 1-458 257-716 (763)
3 KOG0497 Oxidosqualene-lanoster 100.0 6E-103 1E-107 808.8 28.3 457 1-458 257-715 (760)
4 TIGR03463 osq_cycl 2,3-oxidosq 100.0 1.4E-93 2.9E-98 773.4 41.4 447 1-458 150-598 (634)
5 cd02892 SQCY_1 Squalene cyclas 100.0 2.5E-83 5.5E-88 698.2 39.9 445 1-458 153-598 (634)
6 TIGR01787 squalene_cyclas squa 100.0 4.6E-81 1E-85 675.0 38.1 427 1-458 153-582 (621)
7 TIGR01507 hopene_cyclase squal 100.0 7.4E-81 1.6E-85 673.6 39.3 418 1-458 169-592 (635)
8 COG1657 SqhC Squalene cyclase 100.0 5.4E-48 1.2E-52 398.2 14.7 405 1-458 68-474 (517)
9 cd02889 SQCY Squalene cyclase 100.0 2.2E-41 4.8E-46 344.4 28.2 311 135-458 2-312 (348)
10 PLN03012 Camelliol C synthase 100.0 4E-36 8.7E-41 324.9 23.5 289 84-406 386-724 (759)
11 TIGR01507 hopene_cyclase squal 100.0 1.1E-35 2.5E-40 321.9 25.1 280 85-407 285-601 (635)
12 PLN02993 lupeol synthase 100.0 1.5E-34 3.2E-39 313.4 23.6 289 84-406 386-724 (763)
13 TIGR03463 osq_cycl 2,3-oxidosq 100.0 2E-33 4.3E-38 304.7 22.8 287 84-406 273-606 (634)
14 TIGR01787 squalene_cyclas squa 100.0 3.1E-30 6.7E-35 279.5 23.7 281 86-407 266-591 (621)
15 cd02892 SQCY_1 Squalene cyclas 100.0 5.6E-28 1.2E-32 263.9 23.0 287 84-406 275-606 (634)
16 cd00688 ISOPREN_C2_like This g 99.9 7E-26 1.5E-30 222.0 25.2 267 135-458 2-273 (300)
17 cd02889 SQCY Squalene cyclase 99.9 4.1E-25 8.9E-30 224.9 24.2 300 94-435 2-346 (348)
18 cd02896 complement_C3_C4_C5 Pr 99.9 5.8E-23 1.3E-27 205.0 23.5 249 160-458 21-277 (297)
19 cd02897 A2M_2 Proteins similar 99.9 9.6E-23 2.1E-27 203.1 24.9 247 160-458 21-272 (292)
20 cd00688 ISOPREN_C2_like This g 99.9 4.1E-22 9E-27 195.2 24.3 244 129-436 49-299 (300)
21 cd02890 PTase Protein prenyltr 99.8 1.3E-18 2.8E-23 172.8 18.1 184 227-459 25-210 (286)
22 cd02890 PTase Protein prenyltr 99.8 4.2E-18 9E-23 169.2 21.6 253 135-457 2-258 (286)
23 cd02896 complement_C3_C4_C5 Pr 99.8 1.2E-17 2.6E-22 166.8 20.3 226 134-436 54-296 (297)
24 KOG0497 Oxidosqualene-lanoster 99.8 1.5E-18 3.1E-23 181.8 14.1 369 1-405 272-722 (760)
25 cd02894 GGTase-II Geranylgeran 99.8 1.1E-16 2.3E-21 159.2 21.5 248 118-435 36-285 (287)
26 cd02897 A2M_2 Proteins similar 99.8 1.1E-16 2.4E-21 159.5 21.6 224 134-436 51-291 (292)
27 cd02894 GGTase-II Geranylgeran 99.7 4E-16 8.6E-21 155.1 21.9 255 134-457 3-258 (287)
28 PF13249 Prenyltrans_2: Prenyl 99.7 5.1E-18 1.1E-22 144.4 6.9 109 263-404 1-113 (113)
29 PLN03201 RAB geranylgeranyl tr 99.7 2.3E-16 4.9E-21 158.5 18.7 206 183-457 8-214 (316)
30 cd02893 FTase Protein farnesyl 99.7 1.4E-14 2.9E-19 144.8 23.8 248 116-436 31-298 (299)
31 PLN03201 RAB geranylgeranyl tr 99.7 1.1E-14 2.4E-19 146.3 23.1 253 134-459 10-264 (316)
32 PF13243 Prenyltrans_1: Prenyl 99.7 5.2E-17 1.1E-21 137.7 4.1 106 336-457 1-107 (109)
33 cd02895 GGTase-I Geranylgerany 99.6 2E-14 4.2E-19 144.1 21.5 267 135-459 2-280 (307)
34 cd02895 GGTase-I Geranylgerany 99.6 5.9E-14 1.3E-18 140.6 23.0 257 116-435 31-305 (307)
35 PF13249 Prenyltrans_2: Prenyl 99.6 1.6E-15 3.4E-20 129.1 7.1 110 189-354 1-112 (113)
36 cd02893 FTase Protein farnesyl 99.6 2.5E-13 5.5E-18 135.6 23.4 254 135-457 2-270 (299)
37 PF07678 A2M_comp: A-macroglob 99.6 7.6E-14 1.6E-18 135.7 16.4 206 215-458 14-224 (246)
38 TIGR02474 pec_lyase pectate ly 99.5 1E-13 2.2E-18 135.3 14.5 158 228-402 42-225 (290)
39 COG1657 SqhC Squalene cyclase 99.5 2.5E-14 5.4E-19 149.0 10.0 211 152-405 254-481 (517)
40 cd02891 A2M_like Proteins simi 99.5 2.5E-12 5.5E-17 127.0 23.2 216 180-457 46-261 (282)
41 PF13243 Prenyltrans_1: Prenyl 99.5 1.3E-14 2.9E-19 122.8 3.3 107 259-397 1-107 (109)
42 PLN02710 farnesyltranstransfer 99.4 1.9E-11 4.2E-16 126.4 20.3 215 134-405 46-261 (439)
43 PLN02710 farnesyltranstransfer 99.4 1.4E-11 2.9E-16 127.5 16.9 181 229-457 72-253 (439)
44 cd02891 A2M_like Proteins simi 99.3 1.6E-10 3.5E-15 114.1 21.2 222 132-436 49-281 (282)
45 KOG0366 Protein geranylgeranyl 99.3 3.8E-11 8.2E-16 113.3 12.4 155 259-456 68-223 (329)
46 PF07678 A2M_comp: A-macroglob 99.3 1.4E-10 3E-15 112.9 16.3 221 137-436 2-243 (246)
47 COG5029 CAL1 Prenyltransferase 99.2 2.9E-10 6.3E-15 110.3 17.0 211 159-440 101-317 (342)
48 KOG0366 Protein geranylgeranyl 99.2 5.7E-10 1.2E-14 105.4 17.3 192 185-445 68-309 (329)
49 TIGR02474 pec_lyase pectate ly 99.0 5.3E-09 1.1E-13 102.5 14.1 141 309-456 45-219 (290)
50 COG5029 CAL1 Prenyltransferase 98.9 5.1E-09 1.1E-13 101.7 10.6 159 258-456 76-236 (342)
51 KOG0365 Beta subunit of farnes 98.8 7.8E-08 1.7E-12 94.4 15.4 208 135-402 75-287 (423)
52 KOG0367 Protein geranylgeranyl 98.7 1.2E-06 2.7E-11 84.5 17.1 271 133-459 12-292 (347)
53 KOG0365 Beta subunit of farnes 98.6 2.6E-07 5.5E-12 90.8 11.6 169 253-461 116-285 (423)
54 PF09492 Pec_lyase: Pectic aci 98.6 3E-07 6.4E-12 90.3 11.2 141 308-455 39-213 (289)
55 KOG0367 Protein geranylgeranyl 98.4 1.9E-05 4.2E-10 76.5 17.3 146 258-440 175-322 (347)
56 COG1689 Uncharacterized protei 98.3 1.5E-05 3.2E-10 74.0 14.5 252 93-436 8-270 (274)
57 PF09492 Pec_lyase: Pectic aci 98.3 1.2E-06 2.5E-11 86.2 7.4 158 228-402 37-220 (289)
58 PF00432 Prenyltrans: Prenyltr 98.1 7.8E-06 1.7E-10 57.6 5.6 43 384-438 2-44 (44)
59 PF00432 Prenyltrans: Prenyltr 98.0 1.2E-05 2.6E-10 56.6 4.8 41 336-376 3-44 (44)
60 COG1689 Uncharacterized protei 97.9 0.00024 5.1E-09 66.2 12.3 215 184-458 7-243 (274)
61 PLN02592 ent-copalyl diphospha 97.8 0.00048 1E-08 76.9 16.4 92 336-441 284-377 (800)
62 PF01122 Cobalamin_bind: Eukar 97.7 0.0004 8.7E-09 69.5 11.5 91 307-404 186-279 (326)
63 KOG1366 Alpha-macroglobulin [P 97.6 0.00067 1.5E-08 79.9 13.6 236 165-458 948-1190(1436)
64 TIGR01577 oligosac_amyl oligos 97.5 0.009 1.9E-07 65.9 21.2 257 159-457 292-577 (616)
65 PF01122 Cobalamin_bind: Eukar 97.2 0.0048 1E-07 61.9 12.1 148 160-373 143-291 (326)
66 PF07470 Glyco_hydro_88: Glyco 97.1 0.015 3.3E-07 59.1 14.9 229 178-437 85-332 (336)
67 PLN02279 ent-kaur-16-ene synth 97.0 0.011 2.3E-07 66.5 14.6 58 336-394 244-302 (784)
68 PLN02592 ent-copalyl diphospha 96.9 0.0035 7.6E-08 70.1 8.9 84 359-456 94-177 (800)
69 KOG1366 Alpha-macroglobulin [P 96.5 0.019 4.1E-07 68.1 12.1 54 307-376 1158-1211(1436)
70 cd00249 AGE AGE domain; N-acyl 96.3 0.44 9.6E-06 48.9 19.7 101 159-276 49-158 (384)
71 cd00249 AGE AGE domain; N-acyl 96.0 0.77 1.7E-05 47.2 19.5 237 183-454 14-273 (384)
72 PF07470 Glyco_hydro_88: Glyco 95.9 0.63 1.4E-05 47.2 18.3 102 256-375 214-332 (336)
73 PLN02279 ent-kaur-16-ene synth 95.8 0.013 2.8E-07 65.8 5.5 84 359-454 52-135 (784)
74 TIGR01535 glucan_glucosid gluc 95.6 0.41 8.9E-06 52.9 16.2 87 163-269 298-385 (648)
75 TIGR01577 oligosac_amyl oligos 95.4 0.11 2.3E-06 57.5 10.9 120 230-375 298-426 (616)
76 TIGR01535 glucan_glucosid gluc 95.1 0.17 3.8E-06 55.8 11.4 115 230-375 298-415 (648)
77 COG4225 Predicted unsaturated 93.4 2.5 5.5E-05 42.6 14.4 213 115-352 79-309 (357)
78 PF07944 DUF1680: Putative gly 91.2 8.1 0.00018 41.8 16.3 144 182-343 10-157 (520)
79 PF10022 DUF2264: Uncharacteri 90.4 23 0.00049 36.6 17.8 225 160-444 106-351 (361)
80 COG4225 Predicted unsaturated 87.0 38 0.00082 34.4 16.7 228 179-437 98-349 (357)
81 COG3387 SGA1 Glucoamylase and 86.1 27 0.00058 38.7 16.0 264 162-458 287-569 (612)
82 PF07221 GlcNAc_2-epim: N-acyl 82.0 6.8 0.00015 39.7 8.8 95 307-405 20-127 (346)
83 cd04791 LanC_SerThrkinase Lant 81.8 57 0.0012 32.3 18.7 144 165-346 88-232 (321)
84 COG1331 Highly conserved prote 79.4 50 0.0011 36.6 14.5 130 182-355 182-318 (667)
85 COG2373 Large extracellular al 78.9 11 0.00023 46.3 10.1 97 226-346 1167-1264(1621)
86 COG1331 Highly conserved prote 76.8 45 0.00097 37.0 13.2 132 165-325 413-552 (667)
87 PF00759 Glyco_hydro_9: Glycos 68.7 1.3E+02 0.0028 31.6 14.4 92 256-347 97-196 (444)
88 COG2373 Large extracellular al 66.6 70 0.0015 39.5 13.0 72 180-272 1196-1268(1621)
89 PF00723 Glyco_hydro_15: Glyco 65.4 1.5E+02 0.0032 31.4 14.1 41 227-269 123-165 (448)
90 PF07944 DUF1680: Putative gly 64.6 19 0.00042 39.0 7.3 80 309-392 61-157 (520)
91 PLN02909 Endoglucanase 61.8 2.3E+02 0.0051 30.5 17.1 162 180-347 34-222 (486)
92 COG3387 SGA1 Glucoamylase and 61.0 36 0.00079 37.7 8.6 127 231-375 289-429 (612)
93 PF07221 GlcNAc_2-epim: N-acyl 58.0 73 0.0016 32.2 9.9 83 175-276 36-123 (346)
94 PLN00119 endoglucanase 53.1 3.2E+02 0.007 29.4 14.5 38 162-199 9-50 (489)
95 cd04791 LanC_SerThrkinase Lant 46.5 3E+02 0.0065 27.1 12.8 36 163-198 139-177 (321)
96 COG2942 N-acyl-D-glucosamine 2 44.1 99 0.0022 32.1 8.0 107 272-395 32-150 (388)
97 cd04794 euk_LANCL eukaryotic L 43.0 85 0.0019 31.7 7.5 66 308-376 165-237 (343)
98 cd04794 euk_LANCL eukaryotic L 39.0 3E+02 0.0065 27.7 10.9 75 254-346 185-259 (343)
99 KOG3760 Heparan sulfate-glucur 33.7 47 0.001 34.3 3.8 22 384-405 381-402 (594)
100 PLN02340 endoglucanase 33.5 7.1E+02 0.015 27.7 13.7 89 256-347 119-218 (614)
101 PLN02613 endoglucanase 27.6 8.1E+02 0.018 26.5 18.1 89 256-347 115-214 (498)
102 PF00723 Glyco_hydro_15: Glyco 27.5 1.4E+02 0.003 31.5 6.4 72 303-375 121-197 (448)
103 KOG1062 Vesicle coat complex A 25.8 2.7E+02 0.0059 31.6 8.1 53 84-144 306-358 (866)
104 PLN02308 endoglucanase 25.1 7.1E+02 0.015 26.9 11.1 89 256-347 115-214 (492)
105 PF05592 Bac_rhamnosid: Bacter 24.3 2.7E+02 0.0058 29.8 7.9 23 256-278 168-190 (509)
106 PF10022 DUF2264: Uncharacteri 24.2 6.5E+02 0.014 26.0 10.2 110 334-462 132-250 (361)
107 PLN03009 cellulase 22.4 1.2E+02 0.0025 32.9 4.5 35 320-354 103-137 (495)
108 cd04792 LanM-like LanM-like pr 22.1 1.2E+03 0.026 26.6 21.0 255 148-464 476-746 (825)
109 PF11329 DUF3131: Protein of u 20.9 8.1E+02 0.018 25.4 10.1 92 227-327 31-125 (367)
110 PLN02345 endoglucanase 20.6 8.4E+02 0.018 26.2 10.5 89 256-347 85-184 (469)
111 PF00759 Glyco_hydro_9: Glycos 20.1 66 0.0014 33.8 2.1 25 330-354 94-118 (444)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=4.8e-115 Score=936.28 Aligned_cols=457 Identities=56% Similarity=1.049 Sum_probs=436.2
Q ss_pred CceecchhHHHHHHHhcCCCcccCCcchhhhhhhcccCCCCCCChhhhhcccccccCCCCCchHHHHHHHHHHHHHhhhh
Q 012325 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (466)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
||||+|+|||||+|||++||++|++|++.+||+|||++||++|||.++|++||++|+|+||+++++++|..++.++|+++
T Consensus 257 ~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~~~a~~D~y~p~~~~~~~~~~~l~~~~~~~l 336 (759)
T PLN03012 257 MWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARHLCAKEDAYCPHPLIQDLIWDCLYIFAEPFL 336 (759)
T ss_pred HHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhccccccccccCCchHHHhhhHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCh-HHHHHHHHHHHHHHHhhcCCccccccchhhHHHhhhhccccCCCcHHHHHHHHhhhcceeeeCCCceeecCCC
Q 012325 81 MHWPGK-KLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNG 159 (466)
Q Consensus 81 ~~~~~~-~~r~~al~~~~~~i~~~~~~~~~~~~~pv~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~G~~~q~~~~ 159 (466)
..+|++ +||++|+++++++|..|+++|.|++++||+++|+||++++++|+||.|++|+++|.+|+|+.++||++|+| +
T Consensus 337 ~~~~~~~~LR~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p~~~~~k~hl~ri~d~lw~~~dGm~~q~~-g 415 (759)
T PLN03012 337 ACWPFNKLLREKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDPNGDHFKKHLLRISDYLWIAEDGMKMQSF-G 415 (759)
T ss_pred hcccccHHHHHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcEEEeCCceEEcCC-C
Confidence 888755 69999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHh
Q 012325 160 SQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKAS 239 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL 239 (466)
||||||+|+++||+++|+.+++.++++||++||+++|++++++|||..++|+.++|||+|++.|++|||+||||++|+|+
T Consensus 416 SqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~ 495 (759)
T PLN03012 416 SQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCC 495 (759)
T ss_pred CcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHH
Confidence 99999999999999999988888999999999999999988999999999999999999999999999999999999998
Q ss_pred HhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHh
Q 012325 240 LLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTS 319 (466)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~ 319 (466)
+.+...+++..|.++..+++.+||+||++|||+||||++||.++++.|+|.+||+|+|+|+|+||+|+|||++||++|..
T Consensus 496 lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~ 575 (759)
T PLN03012 496 LLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALIL 575 (759)
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHH
Confidence 77765555455666778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCC
Q 012325 320 FKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS 399 (466)
Q Consensus 320 ~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 399 (466)
+++.+|.++.++|++.|+||++||++.|++||||+|+||+||+|||++||.||.++|.++.++++|+|||+||+++|++|
T Consensus 576 f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~D 655 (759)
T PLN03012 576 FKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDN 655 (759)
T ss_pred HhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCC
Confidence 99888888888899999999999999999999999999999999999999999999998667799999999999999999
Q ss_pred CCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCch--hHHHHHHHHHhccCC
Q 012325 400 GGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRIN--CCCSTLKVTLSLERE 458 (466)
Q Consensus 400 GgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~--~i~rgv~~L~~~q~~ 458 (466)
|||||++.||.+++|++.+++.|+++||||||+||+++|+++++ +|+||++||++.|++
T Consensus 656 GGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~ 716 (759)
T PLN03012 656 GGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLE 716 (759)
T ss_pred CCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccC
Confidence 99999999999999998766789999999999999999997664 799999999998875
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=2.8e-113 Score=924.65 Aligned_cols=457 Identities=55% Similarity=1.045 Sum_probs=434.2
Q ss_pred CceecchhHHHHHHHhcCCCcccCCcchhhhhhhcccCCCCCCChhhhhcccccccCCCCCchHHHHHHHHHHHHHhhhh
Q 012325 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (466)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
||||+|+|||||+|||++||++|++|++.+||+|||++||++|+|.++|+.|+++|+|+||+++++++++.+.+++++++
T Consensus 257 ~~~~~R~v~vPmsyl~~~r~~~~~~~~i~~lr~ELy~~py~~i~~~~~r~~~~~~d~y~p~~~~~~~~~~~l~~~~~~~l 336 (763)
T PLN02993 257 TLCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPYEEINWNKARRLCAKEDMYYPHPLVQDLIWDTLHNFVEPFL 336 (763)
T ss_pred hHHhhhhhHHhHHHHhcCCcccCCCchhhhhhHHhccCCchhcChHhhcCCccccCCCCCchHHHHHHHHHHHHHHhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999988899999999999998
Q ss_pred cCCCCh-HHHHHHHHHHHHHHHhhcCCccccccchhhHHHhhhhccccCCCcHHHHHHHHhhhcceeeeCCCceeecCCC
Q 012325 81 MHWPGK-KLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNG 159 (466)
Q Consensus 81 ~~~~~~-~~r~~al~~~~~~i~~~~~~~~~~~~~pv~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~G~~~q~~~~ 159 (466)
+++|++ ++|++|+++++++|++||++|+|+||+|||++|+||++++++|+||.+++|+++|.+|+|+.++||++|+| +
T Consensus 337 ~~~p~~~~lR~~Al~~a~~~i~~ed~~t~y~~i~~vn~~l~ml~~~~~~p~~~~~~~~l~ri~d~lw~~edgm~~q~~-g 415 (763)
T PLN02993 337 TRWPLNKLVREKALQVAMKHIHYEDENSHYITIGCVEKVLCMLACWIENPNGDHFKKHLARIPDYMWVAEDGMKMQSF-G 415 (763)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcEEEeCCceEEcCC-C
Confidence 888877 69999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHh
Q 012325 160 SQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKAS 239 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL 239 (466)
||||||||+++||+++|+.++.+++++||++||+++|++++++|||..++|+.++|||+|++.|++|||+||||++|+|+
T Consensus 416 SqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~ 495 (763)
T PLN02993 416 SQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCC 495 (763)
T ss_pred CchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHH
Confidence 99999999999999999986779999999999999999988999999999999999999999999999999999999998
Q ss_pred HhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHh
Q 012325 240 LLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTS 319 (466)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~ 319 (466)
+.+.+.+++..|.++..+++.+||+||++|||+||||++||.+++..|+|.|||+|+|+++|+||+|+|||++||++|+.
T Consensus 496 l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~ 575 (763)
T PLN02993 496 MLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVL 575 (763)
T ss_pred HHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHH
Confidence 77776655445566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCC
Q 012325 320 FKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS 399 (466)
Q Consensus 320 ~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 399 (466)
+++.+|.++.++|+++|+||++||++.|++||||+|+||+||+|+|++||.||.++|.++.+.+.|+|||+||+++|++|
T Consensus 576 ~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~D 655 (763)
T PLN02993 576 FKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDD 655 (763)
T ss_pred hcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCC
Confidence 98777888888999999999999999999999999999999999999999999999998556689999999999999999
Q ss_pred CCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCc--hhHHHHHHHHHhccCC
Q 012325 400 GGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRI--NCCCSTLKVTLSLERE 458 (466)
Q Consensus 400 GgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~--~~i~rgv~~L~~~q~~ 458 (466)
|||||++.||.+++|++.+++.|+++|||||||||+++|+.++ ++|+||++||++.|++
T Consensus 656 GGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~ 716 (763)
T PLN02993 656 GGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLE 716 (763)
T ss_pred CCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCC
Confidence 9999999999999999866678999999999999999998655 4799999999998873
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=6.2e-103 Score=808.76 Aligned_cols=457 Identities=63% Similarity=1.164 Sum_probs=445.7
Q ss_pred CceecchhHHHHHHHhcCCCcccCCcchhhhhhhcccCCCCCCChhhhhcccccccCCCCCchHHHHHHHHHHHHHhhhh
Q 012325 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (466)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
||||+|.||+||+|||++||++|.+|++..||+|||++||++|||.++|+.|+++|+|+||+++++++|++|..+.++++
T Consensus 257 ~w~~~R~vy~pmsYlygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn~~akeDlyyphs~i~D~l~~~l~~~~e~ll 336 (760)
T KOG0497|consen 257 LWCHCRDVYMPMSYLYGKRFVAPPTPLILQLREELYPEPYDKINWSKARNLCAKEDLYYPHSLLQDLLWALLHKFSEPLL 336 (760)
T ss_pred eEEEecceecccccceeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhhccccccccCCcHHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCCccccccchhhHHHhhhhccccCCCcHHHHHHHHhhhcceeeeCCCceeecCCCC
Q 012325 81 MHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGS 160 (466)
Q Consensus 81 ~~~~~~~~r~~al~~~~~~i~~~~~~~~~~~~~pv~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~G~~~q~~~~s 160 (466)
++||..-+|++|++.++++|+++|++++|+|++||+++++||+++.++|++..+++|+.++.||+|+++|||+||++| |
T Consensus 337 ~rWp~~~~R~~a~~~~me~ihyede~t~yi~ig~v~k~~~ml~cwvedp~s~~Fkkhl~Ri~d~lw~gedGmkmq~~~-s 415 (760)
T KOG0497|consen 337 NRWPLKLIREKALRTAMELIHYEDENTRYITIGPVNKAFNMLACWVEDPNSDAFKKHLARIPDFLWIAEDGMKMQGFN-S 415 (760)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhhcccCceecccchhhhcceeeeeeccchHHHHHHhccccCeEEEcCCCceEeecc-h
Confidence 999985569999999999999999999999999999999999999999999999999999999999999999999995 9
Q ss_pred CcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhH
Q 012325 161 QLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASL 240 (466)
Q Consensus 161 ~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~ 240 (466)
|+|||+++++||.++++.+|+.+.+++|.+||.+.|++++++||...+|||..+|||+||+++++||++||||+++++.+
T Consensus 416 Q~Wdt~falqalla~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaEal~~~l 495 (760)
T KOG0497|consen 416 QLWDTAFALQALLAAGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAEALKCCL 495 (760)
T ss_pred hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhh
Q 012325 241 LLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSF 320 (466)
Q Consensus 241 ~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~ 320 (466)
.++..+.+.+++.++.+++.++|+.|+.+|+.+||+++|++.++..||+.+||+|+|++.+++++|++||+.+|.+|..+
T Consensus 496 ll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F 575 (760)
T KOG0497|consen 496 LLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYF 575 (760)
T ss_pred HhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhh
Confidence 88888878889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCC
Q 012325 321 KKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG 400 (466)
Q Consensus 321 ~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 400 (466)
.+.+|+||+++|...|.+|++||++.|.+||||+|.||+|++|+|+|++.||.++|..|.+.++++|||+||+++|++||
T Consensus 576 ~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~G 655 (760)
T KOG0497|consen 576 HKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDG 655 (760)
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCch--hHHHHHHHHHhccCC
Q 012325 401 GWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRIN--CCCSTLKVTLSLERE 458 (466)
Q Consensus 401 gWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~--~i~rgv~~L~~~q~~ 458 (466)
||||++.||+.++|++.+|+.|.++||+||||+|+.+|+++++ ++.|++++|.+.|-+
T Consensus 656 GWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~ 715 (760)
T KOG0497|consen 656 GWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLE 715 (760)
T ss_pred CCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999998 899999999988853
No 4
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=1.4e-93 Score=773.37 Aligned_cols=447 Identities=42% Similarity=0.726 Sum_probs=407.9
Q ss_pred CceecchhHHHHHHHhcCCCcccCCcchhhhhhhcccCCCCCCChhhhhcccccccCCCCCchHHHHHHHHHHHHHhhhh
Q 012325 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (466)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
||||+|+|||||+||+++||++|++|++.+||+|||++||++|+|.+.|+.|++.|.|.|+++++++++..+. .+++
T Consensus 150 ~~~~~R~v~~p~~~l~~~r~~~~~~~~~~~l~~EL~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~l~-~~~~-- 226 (634)
T TIGR03463 150 FYCHTRMVYLPMSWLYGRRARAPLTPLRAALRQELYDGGYGQVDFVAARERVAPTDVFTPRTFWLRAANQVMY-GYER-- 226 (634)
T ss_pred HHHHhHHHHHhHHHHhcCCcccCCCcchhhhhHHhccCCccccccccccCccccccccCCcHHHHHHHHHHHH-Hhhc--
Confidence 6999999999999999999999999999999999999999999999999999999999999887666665553 3443
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCCccccccchhhHHHhhhhccccCCCcHHHHHHHHhhhcceeeeCC-CceeecCCC
Q 012325 81 MHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAED-GMKVQGYNG 159 (466)
Q Consensus 81 ~~~~~~~~r~~al~~~~~~i~~~~~~~~~~~~~pv~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~-G~~~q~~~~ 159 (466)
+++.++|++|+++++++|+.++++++|.+|+||+++++||++++++|+||.+++|+++|++++|.+++ |+++|+| .
T Consensus 227 --~~~~~lr~~A~~~~~~~i~~~~~~~~~~~i~p~~~~~~~l~~~g~~~~~p~~~k~l~~l~~~~~~~~~~g~~~q~~-~ 303 (634)
T TIGR03463 227 --LAGKQLRARALDFCLEQIRAEDEATHYICISPVNGVLNMLAWFAVNPDGPEVAAHLEGLEDYRYEDDDRGLRYNGY-N 303 (634)
T ss_pred --cCCHHHHHHHHHHHHHHHHHHhcCCCeEehHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhEEEcCCCCEEEeeC-C
Confidence 24467999999999999999999999999999999999999999999999999999999999999999 8999999 6
Q ss_pred CCcchHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHH
Q 012325 160 SQLWDTAFAVQAIISTNLV-EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKA 238 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~-~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~a 238 (466)
+++|||+++++||.++|+. ++++++++||++||+++|++++ +|||..++|+.++|||+|++.|++|||+||||++|+|
T Consensus 304 s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~-~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~A 382 (634)
T TIGR03463 304 SSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLED-TAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSA 382 (634)
T ss_pred CCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcC-CCCchhcCCCCCCCccccccCCCCCCccccHHHHHHH
Confidence 7779999999999999974 3567999999999999999874 5899999999999999999999999999999999999
Q ss_pred hHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHH
Q 012325 239 SLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALT 318 (466)
Q Consensus 239 L~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~ 318 (466)
|+.+...+.. ....+..+++++|++||++|||+||||++|+..++..|||++||+|+|++.++|++++++|++||++|+
T Consensus 383 l~~~~~~~~~-~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~ 461 (634)
T TIGR03463 383 SLVLEPLGLN-PEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALA 461 (634)
T ss_pred HHHHhhcCCc-ccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHH
Confidence 9876542110 001245789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCC
Q 012325 319 SFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRP 398 (466)
Q Consensus 319 ~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 398 (466)
.++...+.++.++|+++|+||++||++.|++||+|+++||+|++|+|++|++||.++|.+ ..++.++||++||+++|++
T Consensus 462 ~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~-~~~~~i~rA~~~Ll~~Q~~ 540 (634)
T TIGR03463 462 AWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGAS-PDDMALQRAAAWLRSYQRA 540 (634)
T ss_pred HHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCCC-cCcHHHHHHHHHHHHccCC
Confidence 998766666677888999999999999999999999999999999999999999999987 5679999999999999999
Q ss_pred CCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 399 SGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 399 DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
||||++++.||.++.|.+ ++.|++++|||||++|+.+|+.++++++||++||+++|.+
T Consensus 541 DGgWg~~~~s~~~~~y~~--~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~ 598 (634)
T TIGR03463 541 DGGWGEVYESCLQARYVE--GKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQE 598 (634)
T ss_pred CCCccCccCccccccccC--CCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999975 6679999999999999999998888999999999999875
No 5
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=2.5e-83 Score=698.22 Aligned_cols=445 Identities=52% Similarity=0.921 Sum_probs=398.7
Q ss_pred CceecchhHHHHHHHhcCCCcccCCcchhhhhhhcccCCCCCCChhhhhcccccccCCCCCchHHHHHHHHHHHHHhhhh
Q 012325 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (466)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
||||+|+||+||+||+++||++|.++++..+|+|||++||++|+|..+|+ ++.|.+.|+++++..+...+ +.+++
T Consensus 153 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~-- 227 (634)
T cd02892 153 FWCWARTVYVPMSYLYGKRPVAPITPLVLSLRDELYVEPYEKINWYKHRN--DLYDYRPPWQRLFDALDRLL-HWYEP-- 227 (634)
T ss_pred HHHHHHHHHHhHHHHhcCCcccCCCCccccchHHhCCCCccccccccccc--ccccCCCChHHHHHHHHHHH-HHHHh--
Confidence 79999999999999999999999999889999999999999999999998 78888878777655554444 33443
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCCccccccchhhHHHhhhhccccC-CCcHHHHHHHHhhhcceeeeCCCceeecCCC
Q 012325 81 MHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVED-PNSEAFKLHIPRINDYLWIAEDGMKVQGYNG 159 (466)
Q Consensus 81 ~~~~~~~~r~~al~~~~~~i~~~~~~~~~~~~~pv~~~l~~l~~~~~~-p~~~~~~~~~~~l~~~~~~~~~G~~~q~~~~ 159 (466)
.+++++|++|+++++++|.++|+++|+++..|++++++|++++..+ |+||.+++|++++.+++|..++|+.++.+++
T Consensus 228 --~~~~~lr~~a~~~~~~~i~~~q~~~g~~~~~~~~~~l~~lal~~~g~~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~~ 305 (634)
T cd02892 228 --LPPKPLRRKALRKAYEWILYRDENTGYLGIIPPPKANNMLALWVLGYPDSPAFKRHLERIDDFLWLGPEGMKMCQTNG 305 (634)
T ss_pred --cCcHHHHHHHHHHHHHHHHHHhcCCCceeeeehHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcEEEecCCcEEEcCCC
Confidence 3456899999999999999999999999999999999999997554 8999999999999999999988887777779
Q ss_pred CCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHh
Q 012325 160 SQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKAS 239 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL 239 (466)
+++|||+++++||.++|+.+++++.+++|++||+++|+.+ ++|||..++|+.++|||+|++.+++|||+||||++++||
T Consensus 306 s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~-~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL 384 (634)
T cd02892 306 SQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILD-NPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKAL 384 (634)
T ss_pred CchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCC-CCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHH
Confidence 9999999999999999987667899999999999999943 679999999999999999999999999999999999999
Q ss_pred HhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHh
Q 012325 240 LLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTS 319 (466)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~ 319 (466)
+.++..++. |..++.+++++|++||+++||+||||++|+..++..|++.++|.+.||+.++|++++++|+++|++|..
T Consensus 385 ~~~~~~~~~--~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~ 462 (634)
T cd02892 385 LRLQELPPF--GEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGL 462 (634)
T ss_pred HHhhccCCc--chhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHH
Confidence 988654321 234567899999999999999999999999998888777778889999999999999999999999999
Q ss_pred hhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCC
Q 012325 320 FKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS 399 (466)
Q Consensus 320 ~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 399 (466)
++...+.++. +|++.++||++||++.|++||+|+++||++++|+|++++.||..+|..+..++.++++++||+++|++|
T Consensus 463 ~~~~~~~~r~-~i~~~i~rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~D 541 (634)
T cd02892 463 FGKLYPGHRR-EIDPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPD 541 (634)
T ss_pred hcccCcchHH-HHHHHHHHHHHHHHHccCCCCCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCC
Confidence 9876555544 788899999999999999999999999999999999999999999976456789999999999999999
Q ss_pred CCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 400 GGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 400 GgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
|||++++.+|.++.|.+ ++.|++++|||||++|+.+|..+.+.++++++||+++|++
T Consensus 542 GgWge~~~s~~~~~~~~--~~~s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~ 598 (634)
T cd02892 542 GGWGESYLSYEDKSYAG--GGRSTVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQLP 598 (634)
T ss_pred CCCCCccccccCcccCC--CCCCcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCCC
Confidence 99999999998888864 5689999999999999999988878899999999999875
No 6
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=4.6e-81 Score=675.03 Aligned_cols=427 Identities=43% Similarity=0.789 Sum_probs=369.5
Q ss_pred CceecchhHHHHHHHhcCCCcccCCcchhhhhhhcccCCCCCCChhhhhcccccccCCCCCchHHHHHHHHHHHHHhhhh
Q 012325 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (466)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
||||+|+|++||+|++++|++.|.+| |+|||++| +++ .+.|+.|++.|+|+|++++.+.++..+..+.++++
T Consensus 153 ~w~~~~~v~l~~~~~~~~~~~~~~~~-----~~el~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (621)
T TIGR01787 153 SWCRCRMVYLPMSYCYGERLSAPIDP-----REELYVED-DSI--RAQRNNVAKEDLYTPHSWLLRALYGLLNLFYHPFL 224 (621)
T ss_pred hhhhhhhHHHHHHHHcCccccCCCCc-----chhhcCCC-cch--hhccCCCCcccccccHHHHHHHHHHHHhhcccccc
Confidence 69999999999999999999988877 69999999 777 46788899999999988776555433322111111
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCCccccccchhhHHHhhhhccccC-CCcHHHHHHHHhhhcceeeeCCCceeecCCC
Q 012325 81 MHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVED-PNSEAFKLHIPRINDYLWIAEDGMKVQGYNG 159 (466)
Q Consensus 81 ~~~~~~~~r~~al~~~~~~i~~~~~~~~~~~~~pv~~~l~~l~~~~~~-p~~~~~~~~~~~l~~~~~~~~~G~~~q~~~~ 159 (466)
.++++++|+++++++|+. ++ |++||+++++|++++..+ ||||.+++|+++|++++|..+||+++|+| +
T Consensus 225 ----~~~a~~~a~~~~~~~~~~----~g--~~~~i~~~~~~~al~~~g~~d~p~~~~~l~~l~~~~~~~~dg~~~q~~-~ 293 (621)
T TIGR01787 225 ----RKALRKRALQWLYEHIAA----DG--SIGPISKAMAMLALWFLDGPNSPAFQKHLQRIDDYLWLQLDGMKMQGT-G 293 (621)
T ss_pred ----cHHHHHHHHHHHHHHhcc----CC--CchhHhHHHHHHHHHHcCCCCCHHHHHHHHHHhhcEEEeCCccEEecC-C
Confidence 234566666666666653 33 788999899999987655 79999999999999999999999999999 9
Q ss_pred CCcchHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHH
Q 012325 160 SQLWDTAFAVQAIISTNL--VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLK 237 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~--~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~ 237 (466)
|+||||+++++||.++|+ .++.++.++||++||+++|++++++|||..+.++..+|||+|++.|++|||+|||+.+++
T Consensus 294 s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~l 373 (621)
T TIGR01787 294 SQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVAL 373 (621)
T ss_pred CcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHH
Confidence 999999999999999996 345689999999999999999877899998777777899999999999999999999988
Q ss_pred HhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHH
Q 012325 238 ASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQAL 317 (466)
Q Consensus 238 aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL 317 (466)
++..+... +.++..+++++|++||+++||+||||++|+.+++..|++.+||.|+|++.++|++++++|++||++|
T Consensus 374 a~~l~~~~-----~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL 448 (621)
T TIGR01787 374 KAVLLLQE-----DEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQAL 448 (621)
T ss_pred HHHHhhcC-----cccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHH
Confidence 76544321 1245678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccC
Q 012325 318 TSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQR 397 (466)
Q Consensus 318 ~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~ 397 (466)
..++. +.+++++.|+||++||++.|++||+|+++||++|+|+|++++.+|..+|..+.+++.++||++||+++|+
T Consensus 449 ~~~~~-----r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~ 523 (621)
T TIGR01787 449 GAFGH-----RADEIRNVLERALEYLRREQRADGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQM 523 (621)
T ss_pred HHhcC-----ccHhHHHHHHHHHHHHHHhcCCCCCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcC
Confidence 98862 2244568999999999999999999999999999999999999999999763345899999999999999
Q ss_pred CCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 398 PSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 398 ~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
+||||||++.||.++.|.+ .+.|++++|||||+||++++..+.++++||++||++.|++
T Consensus 524 ~DGGWge~~~s~~~~~y~~--~~~S~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~ 582 (621)
T TIGR01787 524 PDGGWGEDCFSYEDPSYVG--SGGSTPSQTGWALMALIAAGEADSEAIERGVKYLLETQRP 582 (621)
T ss_pred CCCCCCcCCccccccccCC--CCCCCHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCCC
Confidence 9999999999999999976 4579999999999999999988888999999999998874
No 7
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=7.4e-81 Score=673.56 Aligned_cols=418 Identities=27% Similarity=0.391 Sum_probs=361.6
Q ss_pred CceecchhHHHHHHHhcCCCcccCCcchhhhh-hhcccCCCCCCChhhhhcccccccCCCCCch-HHHHHHHHHHHHHhh
Q 012325 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALR-KELFTVPYHEIDWNEARNLCAKEDLYYPHPL-IQDVLWATLDKVVEP 78 (466)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr-~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~ 78 (466)
||||+|+|||||+||+++||+++++. ++| +|||++||++ .|+.+++.| ++| ++..+...+ +.+++
T Consensus 169 ~~~~~R~~~~P~~~l~~~r~~~~~~~---~~~~~eL~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~l-~~~~~ 235 (635)
T TIGR01507 169 FSSWARATVVPLSIVCSRKPVFPLPE---RARVPELYETDVPK-----PRRRGAKGG----TGWGIFDALDRAL-HGYEK 235 (635)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCCc---ccChHhhcCCChHH-----hcccCCccC----CcHHHHHHHHHHH-HHHHh
Confidence 79999999999999999999999863 455 9999999854 455566555 234 444443333 34444
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhhcCCcc-ccccchhh-HHHhhhhccccCCCcHHHHHHHHhhhcceeeeCCCceeec
Q 012325 79 LLMHWPGKKLREKALRNAIKHIHYEDENTR-YLCIGPVN-KVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQG 156 (466)
Q Consensus 79 ~~~~~~~~~~r~~al~~~~~~i~~~~~~~~-~~~~~pv~-~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~G~~~q~ 156 (466)
.++.++|++|+++++++|+.++++++ |.++.|.. .+|.++.+.+..|+||.+++|+++|++++|..++|+++|+
T Consensus 236 ----l~~~~lr~~A~~~a~~~i~~~~e~~g~~~~i~p~~~~~l~~l~~~g~~~~~~~~~~~l~~l~~~~~~~~~g~~~~~ 311 (635)
T TIGR01507 236 ----LSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPAMFNALIALKILGMTQHDAFIKLGWEGIDLYGVELDDSWMFQA 311 (635)
T ss_pred ----cCCcHHHHHHHHHHHHHHHHHHcCCCceeecchHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHheEecCCceEecC
Confidence 33457999999999999999988877 88888822 2333333335569999999999999999999889999999
Q ss_pred CCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHH
Q 012325 157 YNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGL 236 (466)
Q Consensus 157 ~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al 236 (466)
+ +|++|||+++++||.++|++++ ++.++||.+||+++|++ .+|||.+++++..+|||+|++.|++|||+||||++|
T Consensus 312 ~-~s~vWDTa~ai~AL~~ag~~~~-~p~l~kA~~~L~~~Qi~--~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L 387 (635)
T TIGR01507 312 C-VSPVWDTALAVLALREAGLPAD-HDALVKAGEWLLDKQIT--VPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVV 387 (635)
T ss_pred C-CCcHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhhccc--CCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHH
Confidence 9 9999999999999999998776 78999999999999997 469999999999999999999999999999999999
Q ss_pred HHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCC--ccccCCCCCcHHHHH
Q 012325 237 KASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGD--IVIDYPCVECTSASI 314 (466)
Q Consensus 237 ~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~--~~~d~~~~~~Ta~vl 314 (466)
+||..+. .++ .+...+++++|++||+++||+||||++|+.+++..|++++| |++ .|+|+|++++|++|+
T Consensus 388 ~AL~~~~-~~~----~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~----f~d~~~~~D~~~~d~Ta~~l 458 (635)
T TIGR01507 388 WALNGLR-LPD----ERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIP----FCDFGAVTDPPTADVTARVL 458 (635)
T ss_pred HHHHHcC-CCc----cccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCC----ccccccccCCCCccHHHHHH
Confidence 9998763 221 23457899999999999999999999999999999999999 666 789999999999999
Q ss_pred HHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHh
Q 012325 315 QALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLS 394 (466)
Q Consensus 315 ~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~ 394 (466)
++|+.++.. +. +++|+||++||++.|++||+|+|+||+|++|+|++|+.+|...|.. ..++.|+||++||++
T Consensus 459 ~al~~~g~~-~~------~~~i~rav~~L~~~Q~~dG~W~g~wg~~~~Y~T~~al~aL~~~g~~-~~~~~i~rAv~wL~~ 530 (635)
T TIGR01507 459 ECLGSFGYD-DA------WPVIERAVEYLKREQEPDGSWFGRWGVNYLYGTGAVLSALKAVGID-TREPYIQKALAWLES 530 (635)
T ss_pred HHHHHhCCC-ch------hHHHHHHHHHHHHccCCCCCCccCCCCccccHHHHHHHHHHHcCCC-cccHHHHHHHHHHHH
Confidence 999998642 11 5799999999999999999999999999999999999999999987 568999999999999
Q ss_pred ccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 395 KQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 395 ~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
+|++||||+|++.||.++.|.+ .+.|++++|||||+||++++..+.+.|+||++||+++|++
T Consensus 531 ~Q~~DGGWge~~~sy~~~~~~g--~g~s~~s~TA~AL~AL~~ag~~~~~~I~rav~~L~~~Q~~ 592 (635)
T TIGR01507 531 HQNPDGGWGEDCRSYEDPAYAG--KGASTASQTAWALIALIAAGRAESEAARRGVQYLVETQRP 592 (635)
T ss_pred hcCCCCCCCCCCcccccccccC--CCCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Confidence 9999999999999999998865 4679999999999999999988888999999999999876
No 8
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=100.00 E-value=5.4e-48 Score=398.17 Aligned_cols=405 Identities=29% Similarity=0.418 Sum_probs=329.6
Q ss_pred CceecchhHHHHHHHhcCCCcccCCcchhhhhhhcccCCCCCCChhhhhcccccccCCCCCchHHHHHHHHHHHHHhhhh
Q 012325 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (466)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
||||+|.+++| -..| +-.++|+.+ +...++++|++.....++..+.+.....
T Consensus 68 ~~~~~r~~~~p-----------~~~~----~~~~~~~~~------------~~~~~l~yp~~~~~~r~~~~~~~~~~~~- 119 (517)
T COG1657 68 MSSWARSSTVP-----------LIAP----ASDPLLTEG------------VKNVLLLYPTSGDVERLLLLLDHYFKRG- 119 (517)
T ss_pred HHHHhhhcccc-----------cccc----ccccccccc------------ccceeEEcCCcchHHHHHHHHHHHHhhc-
Confidence 68999999999 1111 224455443 2236778898775555555554443332
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCCccccccchhhHHHhhhhccc-cCCCc-HHHHHHHHhhhcceeeeCCCceeecCC
Q 012325 81 MHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWV-EDPNS-EAFKLHIPRINDYLWIAEDGMKVQGYN 158 (466)
Q Consensus 81 ~~~~~~~~r~~al~~~~~~i~~~~~~~~~~~~~pv~~~l~~l~~~~-~~p~~-~~~~~~~~~l~~~~~~~~~G~~~q~~~ 158 (466)
...|+.+++.+ +.+..++.+.++.. .-+.+|+++++++...+. ...++ ..++++..+..++.+....|+-+...+
T Consensus 120 ~~~~~~~~~~~--~~a~l~~~e~Qn~d-g~w~g~v~aa~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (517)
T COG1657 120 FPAPVTSLRVR--KEAELWKLERQNDD-GSWRGIVNAASNVVLSLVVLGLDSNEPFQRRELRAEDSELVKAVGRGLAWLL 196 (517)
T ss_pred cCccchhhhhh--hhhheeeeeecccc-cccccchhhhhHHHHHHHHhhhccchHhhhhhhhhhhhhhhccccccccccc
Confidence 23345556655 34444444444333 346899988777655543 24444 668888888888777777777665666
Q ss_pred CCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHH
Q 012325 159 GSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKA 238 (466)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~a 238 (466)
++|+|||+|+.+++..+|+.+...+++.+|..||..+|..+. ++|+.+ ++..+|||+|+..+++|||.|+|+.++++
T Consensus 197 ~~q~wD~~f~~~~~~~~g~~~~~~~aiaka~~~L~~kq~~~~--~~~~~~-~~~~~g~W~f~~~~~~ypd~d~T~~~~~a 273 (517)
T COG1657 197 GSQVWDGGFIRRALLVAGLAETPIPAIAKALMFLLDKQVLKY--ADWAVK-RKFSPGGWGFSNINTGYPDADDTAGVVRA 273 (517)
T ss_pred ccccccchhhhhhhhhcCccccchHhHHhhhhhhHHHHHHHh--hccccc-cccCCCccceeecccCCCCchhhhHHHHH
Confidence 999999999999999999987522789999999999999875 899998 99999999999999999999999999999
Q ss_pred hHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHH
Q 012325 239 SLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALT 318 (466)
Q Consensus 239 L~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~ 318 (466)
+....+ .+.+.++++|+..|||..|||+.|+..+.+.|++.+|+++++ .|+++++++||+.++.+|+
T Consensus 274 l~~~~~-----------~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~--~~~~~s~adct~~~~~~l~ 340 (517)
T COG1657 274 LIGVQS-----------LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVK--AMVDPSTADCTHRVVLALA 340 (517)
T ss_pred HHhhcc-----------hhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcc--ccccCCcccCCCccHHHHh
Confidence 987643 456677999999999999999999999999999999998876 8999999999999999999
Q ss_pred hhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCC
Q 012325 319 SFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRP 398 (466)
Q Consensus 319 ~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 398 (466)
.+....+.++ ...|++|++||++.|++||+|+++|++|++|+|+.++.+|...|..+.+...+++++.||..+|++
T Consensus 341 a~~~yl~~~~----~~~i~~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~ 416 (517)
T COG1657 341 ALNAYLEAYD----GQPIERALEWLLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMP 416 (517)
T ss_pred hhhhcccccc----CCcccHHHhhhhhhccccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhcccc
Confidence 9876544221 246999999999999999999999999999999999999999999866788999999999999999
Q ss_pred CCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 399 SGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 399 DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
||||++.+.++.++.|.. -+.|..+||+||+.+++.+.+++.+.+++++++|++.|++
T Consensus 417 ~~Gw~e~~~~~~~~~~~~--t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~ 474 (517)
T COG1657 417 DGGWGEAKEAISDPVYTG--TESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEP 474 (517)
T ss_pred CCCccccccccccccccc--ccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCC
Confidence 999999999999988876 2578899999999999999999999999999999999876
No 9
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=100.00 E-value=2.2e-41 Score=344.44 Aligned_cols=311 Identities=47% Similarity=0.815 Sum_probs=257.6
Q ss_pred HHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCC
Q 012325 135 KLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISK 214 (466)
Q Consensus 135 ~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~ 214 (466)
.+++++|.+. +++||.+... .+++|+|+++++||.++|..+++.+.++||++||+++|...++ ++|...+++.+.
T Consensus 2 ~~~~~~L~~~--Q~~dG~W~~~--~~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~-~~~~~~~~~~~~ 76 (348)
T cd02889 2 RRALDFLLSL--QAPDGHWPGE--YSQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNP-DDWKVKYRHLRK 76 (348)
T ss_pred chHHHHHHHh--ccCCCCcccc--CCchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCC-CchhhcCCCCCC
Confidence 5778888776 5678866422 2899999999999999998666688999999999999976543 457778888899
Q ss_pred CCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcc
Q 012325 215 GAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPA 294 (466)
Q Consensus 215 GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~ 294 (466)
|||+|+....++|++|+|+.++++|..+....+. +..+..+.+.++++||+++|++||||..|...++..|++. +.
T Consensus 77 Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~--~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~--~~ 152 (348)
T cd02889 77 GGWAFSTANQGYPDSDDTAEALKALLRLQKKPPD--GKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLEL--IP 152 (348)
T ss_pred CcCcccCcCCCCCCCCChHHHHHHHHHhhccCcc--cchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhc--Cc
Confidence 9999998877889999999999999887654321 2345688999999999999999999998877666566553 22
Q ss_pred cccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHH
Q 012325 295 ETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVA 374 (466)
Q Consensus 295 e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~ 374 (466)
+.+++...+++++.+|+++|.+|..++...+.++ +++.+.++|+++||++.|++||+|.+.|+.+++|.|++++.||..
T Consensus 153 ~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~-~~~~~~i~~a~~~L~~~q~~dG~w~~~~~~~~~y~ta~a~~aL~~ 231 (348)
T cd02889 153 EVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHR-REIDPAIRRAVKYLEREQEPDGSWYGRWGVCFIYGTWFALEALAA 231 (348)
T ss_pred hhhcCCccCCCCcchHHHHHHHHHHhhhcCCchH-HHHHHHHHHHHHHHHHhCCCCCCccccCCCcchHHHHHHHHHHHH
Confidence 3356666778889999999999999886533322 356789999999999999999999999999999999999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 012325 375 AGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLS 454 (466)
Q Consensus 375 ~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~ 454 (466)
+|.. ...+.++++++||+++|++||||++.+.++..+.|.+ +..+++..|||+|++|+.++..+.+.++++++||.+
T Consensus 232 ~g~~-~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~--~~~~~~~~Ta~al~aL~~~g~~~~~~v~~a~~wL~~ 308 (348)
T cd02889 232 AGED-ENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAG--GGRSTVVQTAWALLALMAAGEPDSEAVKRGVKYLLN 308 (348)
T ss_pred cCCC-cCcHHHHHHHHHHHHccCCCCCcCCcccccccccccC--CCCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9886 5678999999999999999999998766655444433 457889999999999999998777789999999999
Q ss_pred ccCC
Q 012325 455 LERE 458 (466)
Q Consensus 455 ~q~~ 458 (466)
+|++
T Consensus 309 ~Q~~ 312 (348)
T cd02889 309 TQQE 312 (348)
T ss_pred hcCC
Confidence 9876
No 10
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=4e-36 Score=324.85 Aligned_cols=289 Identities=16% Similarity=0.182 Sum_probs=220.8
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCccc--cccchhh-HHHhhhhcc--ccC-CCcHHHHHHHHhhhcceeee---------
Q 012325 84 PGKKLREKALRNAIKHIHYEDENTRY--LCIGPVN-KVLNMLCCW--VED-PNSEAFKLHIPRINDYLWIA--------- 148 (466)
Q Consensus 84 ~~~~~r~~al~~~~~~i~~~~~~~~~--~~~~pv~-~~l~~l~~~--~~~-p~~~~~~~~~~~l~~~~~~~--------- 148 (466)
|=++..+++++++.+++-..+++. + .|.+||| |++++.++. +-. ...|.++|+.++|++-.+..
T Consensus 386 p~~~~~k~hl~ri~d~lw~~~dGm-~~q~~gSqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~ 464 (759)
T PLN03012 386 PNGDHFKKHLLRISDYLWIAEDGM-KMQSFGSQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNM 464 (759)
T ss_pred CCCHHHHHHHHHhhhcEEEeCCce-EEcCCCCcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhh
Confidence 456789999999999876434332 2 3588898 888776664 222 35668999999998765532
Q ss_pred -----CCCceee--cCCCCCcchHHHHHHHH---HhcCC----chhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCC
Q 012325 149 -----EDGMKVQ--GYNGSQLWDTAFAVQAI---ISTNL----VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISK 214 (466)
Q Consensus 149 -----~~G~~~q--~~~~s~vwDTa~a~~AL---~~ag~----~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~ 214 (466)
++|+-++ ....+.++|||.++.|+ ..... .....+.+.+|++||+++|+++ |+|..+.+...
T Consensus 465 ~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~d---GGwaafe~~~~- 540 (759)
T PLN03012 465 YRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKN---GGMTAWEPAGA- 540 (759)
T ss_pred CCCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhccCCC---CCEeeecCCcc-
Confidence 1343333 33347889999999763 32221 1112578999999999999987 77766555322
Q ss_pred CCCC--------CccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccc
Q 012325 215 GAWP--------FSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYP 286 (466)
Q Consensus 215 GGW~--------f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~ 286 (466)
..|- |.+.--.+|.+|||+++|+||..+++..+......+ +++|++|++||++.|++||||
T Consensus 541 ~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i-~~~i~rAv~~L~~~Q~~DGsW---------- 609 (759)
T PLN03012 541 PEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEI-NAFIKKAAEYIENIQMLDGSW---------- 609 (759)
T ss_pred hHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhh-HHHHHHHHHHHHHhcCCCCCC----------
Confidence 2343 444444678999999999999988765443222333 679999999999999999999
Q ss_pred cccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCccc----
Q 012325 287 WLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFT---- 362 (466)
Q Consensus 287 ~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~---- 362 (466)
+|+|++++ +++|+.||.+|..+|+.+++ .++|+||++||++.|++||||+++|++|+.
T Consensus 610 ----------~G~Wgv~y--~YgT~~aL~aL~a~g~~~~~------~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~ 671 (759)
T PLN03012 610 ----------YGNWGICF--TYGTWFALAGLAAAGKTFND------CEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYI 671 (759)
T ss_pred ----------cccccccC--CcHHHHHHHHHHHhCccCCC------cHHHHHHHHHHHHhcCCCCCcCCCCCCCCCcccc
Confidence 78999998 56999999999999976543 379999999999999999999999988765
Q ss_pred ---------chHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcc
Q 012325 363 ---------YGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESY 406 (466)
Q Consensus 363 ---------Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~ 406 (466)
|.|+|||+||.++|..+.+.+.|+||++||+++|++||+|-+..
T Consensus 672 ~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~ 724 (759)
T PLN03012 672 AQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQE 724 (759)
T ss_pred CCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCce
Confidence 88999999999999875555789999999999999999998754
No 11
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=1.1e-35 Score=321.93 Aligned_cols=280 Identities=23% Similarity=0.276 Sum_probs=209.5
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCccc--cccchhh-HHHhhhhcc--ccCCCcHHHHHHHHhhhcceeee-----------
Q 012325 85 GKKLREKALRNAIKHIHYEDENTRY--LCIGPVN-KVLNMLCCW--VEDPNSEAFKLHIPRINDYLWIA----------- 148 (466)
Q Consensus 85 ~~~~r~~al~~~~~~i~~~~~~~~~--~~~~pv~-~~l~~l~~~--~~~p~~~~~~~~~~~l~~~~~~~----------- 148 (466)
-++.++++++++.+++...+++ .+ .+.+||| |++++.++. +..+++|.++|+.++|.+.++..
T Consensus 285 ~~~~~~~~l~~l~~~~~~~~~g-~~~~~~~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~ 363 (635)
T TIGR01507 285 HDAFIKLGWEGIDLYGVELDDS-WMFQACVSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNL 363 (635)
T ss_pred CCHHHHHHHHHHHHheEecCCc-eEecCCCCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCC
Confidence 3578999999999988754333 33 2556887 777766663 44578899999999998876543
Q ss_pred -CCCceee--cCCCCCcchHHHHHHHHHhcCCch--hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCC---CCCCCc
Q 012325 149 -EDGMKVQ--GYNGSQLWDTAFAVQAIISTNLVE--EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISK---GAWPFS 220 (466)
Q Consensus 149 -~~G~~~q--~~~~s~vwDTa~a~~AL~~ag~~~--~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~---GGW~f~ 220 (466)
++|+-++ ++..+++|||+.++.||...+.++ ..++++++|++||+++|+++ |+|..+.+.... +--+|.
T Consensus 364 ~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~d---Ggw~af~~~~~~~~l~~~~f~ 440 (635)
T TIGR01507 364 EPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSN---GGWGAFDVDNTSDLLNHIPFC 440 (635)
T ss_pred CCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCC---CCEecccCCcchhHHhcCCcc
Confidence 2333333 333589999999999999986543 34689999999999999986 444322110000 000111
Q ss_pred c--CCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccC
Q 012325 221 T--ADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFG 298 (466)
Q Consensus 221 ~--~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg 298 (466)
+ .-..+|++|||+.+++||..++. ...+++|++|++||+++|++|||| ||
T Consensus 441 d~~~~~D~~~~d~Ta~~l~al~~~g~--------~~~~~~i~rav~~L~~~Q~~dG~W--------------------~g 492 (635)
T TIGR01507 441 DFGAVTDPPTADVTARVLECLGSFGY--------DDAWPVIERAVEYLKREQEPDGSW--------------------FG 492 (635)
T ss_pred ccccccCCCCccHHHHHHHHHHHhCC--------CchhHHHHHHHHHHHHccCCCCCC--------------------cc
Confidence 1 11245899999999999987642 123689999999999999999999 55
Q ss_pred CccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccC-----------CCcccchHHH
Q 012325 299 DIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW-----------GVCFTYGTWF 367 (466)
Q Consensus 299 ~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~w-----------g~~~~Y~T~~ 367 (466)
.+.+++ .++|+.||++|+..+.... ++.|+||++||++.|++||||++.. |.+..+.|++
T Consensus 493 ~wg~~~--~Y~T~~al~aL~~~g~~~~-------~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~ 563 (635)
T TIGR01507 493 RWGVNY--LYGTGAVLSALKAVGIDTR-------EPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAW 563 (635)
T ss_pred CCCCcc--ccHHHHHHHHHHHcCCCcc-------cHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHH
Confidence 555555 7899999999998775321 4789999999999999999997531 3456678999
Q ss_pred HHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCccc
Q 012325 368 GVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYL 407 (466)
Q Consensus 368 al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~ 407 (466)
||.||.++|.. .++.|+||++||+++|++||||+|.+.
T Consensus 564 AL~AL~~ag~~--~~~~I~rav~~L~~~Q~~dG~W~e~~~ 601 (635)
T TIGR01507 564 ALIALIAAGRA--ESEAARRGVQYLVETQRPDGGWDEPYY 601 (635)
T ss_pred HHHHHHHhCCC--CcHHHHHHHHHHHHhcCCCCCCCCccc
Confidence 99999999975 678999999999999999999999753
No 12
>PLN02993 lupeol synthase
Probab=100.00 E-value=1.5e-34 Score=313.39 Aligned_cols=289 Identities=18% Similarity=0.204 Sum_probs=216.4
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCccc--cccchhh-HHHhhhhcc--cc-CCCcHHHHHHHHhhhcceeee---------
Q 012325 84 PGKKLREKALRNAIKHIHYEDENTRY--LCIGPVN-KVLNMLCCW--VE-DPNSEAFKLHIPRINDYLWIA--------- 148 (466)
Q Consensus 84 ~~~~~r~~al~~~~~~i~~~~~~~~~--~~~~pv~-~~l~~l~~~--~~-~p~~~~~~~~~~~l~~~~~~~--------- 148 (466)
|=++.++++++++.+++-..+++. + .|.+||| |++++.++. +- ++.+|.++||.++|++-.+..
T Consensus 386 p~~~~~~~~l~ri~d~lw~~edgm-~~q~~gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~ 464 (763)
T PLN02993 386 PNGDHFKKHLARIPDYMWVAEDGM-KMQSFGSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSM 464 (763)
T ss_pred CCCHHHHHHHHHhhhcEEEeCCce-EEcCCCCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhh
Confidence 456789999999999876544332 2 3688898 888877774 32 367999999999998765531
Q ss_pred -----CCCceee--cCCCCCcchHHHHHHH---HHhcCC----chhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCC
Q 012325 149 -----EDGMKVQ--GYNGSQLWDTAFAVQA---IISTNL----VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISK 214 (466)
Q Consensus 149 -----~~G~~~q--~~~~s~vwDTa~a~~A---L~~ag~----~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~ 214 (466)
++|+-++ ....+.++|||.++.| |..... .....+++.+|++||+++|+++ |+|..+.+...
T Consensus 465 ~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~d---GG~aafe~~~~- 540 (763)
T PLN02993 465 YRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSEN---GGVTAWEPVRA- 540 (763)
T ss_pred CCCCCCCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCC---CCEEeeeCCCc-
Confidence 2343333 3335789999999985 433322 1112578999999999999987 66655443221
Q ss_pred CCCC--------CccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccc
Q 012325 215 GAWP--------FSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYP 286 (466)
Q Consensus 215 GGW~--------f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~ 286 (466)
..|- |...--.+|.+|||+.+|+||..+++..+......+ ++++++|++||++.|++||||
T Consensus 541 ~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei-~~~i~rAv~yL~~~Q~~DGSW---------- 609 (763)
T PLN02993 541 YKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEI-IKSIEKAVQFIESKQTPDGSW---------- 609 (763)
T ss_pred hhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhH-HHHHHHHHHHHHHhcCCCCCc----------
Confidence 2221 111222468899999999999988653332222233 678999999999999999999
Q ss_pred cccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCccc----
Q 012325 287 WLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFT---- 362 (466)
Q Consensus 287 ~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~---- 362 (466)
+|+|++++ +++|+.||.+|..+|..++. .+.|+||++||++.|++||+|+++|++|..
T Consensus 610 ----------~G~Wgv~y--~YgT~~aL~aL~a~G~~~~~------~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~ 671 (763)
T PLN02993 610 ----------YGNWGICF--IYATWFALGGLAAAGKTYND------CLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYI 671 (763)
T ss_pred ----------cccccccc--CcHHHHHHHHHHHcCCCCCC------cHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccc
Confidence 67888887 67999999999999875432 368999999999999999999998876533
Q ss_pred ---------chHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcc
Q 012325 363 ---------YGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESY 406 (466)
Q Consensus 363 ---------Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~ 406 (466)
|+|+||++||.++|..+...+.|+||++||+++|++||+|-+..
T Consensus 672 ~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~ 724 (763)
T PLN02993 672 PLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQE 724 (763)
T ss_pred cCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcc
Confidence 89999999999999864455799999999999999999998753
No 13
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=2e-33 Score=304.73 Aligned_cols=287 Identities=19% Similarity=0.178 Sum_probs=214.8
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCccc--cccchhh-HHHhhhhcc--cc-C-CCcHHHHHHHHhhhcceee---------
Q 012325 84 PGKKLREKALRNAIKHIHYEDENTRY--LCIGPVN-KVLNMLCCW--VE-D-PNSEAFKLHIPRINDYLWI--------- 147 (466)
Q Consensus 84 ~~~~~r~~al~~~~~~i~~~~~~~~~--~~~~pv~-~~l~~l~~~--~~-~-p~~~~~~~~~~~l~~~~~~--------- 147 (466)
|=++..+++++++.+++...++++-+ .|.+|++ |+++++++. +. + ...+.++|+.++|.+..+.
T Consensus 273 ~~~p~~~k~l~~l~~~~~~~~~~g~~~q~~~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~ 352 (634)
T TIGR03463 273 PDGPEVAAHLEGLEDYRYEDDDRGLRYNGYNSSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRF 352 (634)
T ss_pred CCCHHHHHHHHHHHhhEEEcCCCCEEEeeCCCCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhc
Confidence 34578999999999988644442223 3678887 888877774 21 2 2347899999999876541
Q ss_pred ----eCCCceee--cCCCCCcchHHHHHHHHHh---cCCch---hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCC
Q 012325 148 ----AEDGMKVQ--GYNGSQLWDTAFAVQAIIS---TNLVE---EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKG 215 (466)
Q Consensus 148 ----~~~G~~~q--~~~~s~vwDTa~a~~AL~~---ag~~~---~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~G 215 (466)
.++|+.++ +...+.++||+.++.||.. .+... ..++++.+|++||+++|++| |+|..+.++. .|
T Consensus 353 ~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~d---GGw~~y~~~~-~~ 428 (634)
T TIGR03463 353 FRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNED---GGFGTYERQR-GP 428 (634)
T ss_pred CCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCC---CCEeccCCCC-cH
Confidence 23454444 2334678999999999875 33221 12478999999999999986 8888766543 46
Q ss_pred CC--------CCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceecccccccccc
Q 012325 216 AW--------PFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPW 287 (466)
Q Consensus 216 GW--------~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~ 287 (466)
.| -|.+...++|.+|||+.+|.+|..+....+...... ..+++++|++||++.|++||||.
T Consensus 429 ~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~-i~~ai~rav~~L~~~Q~~dGsW~---------- 497 (634)
T TIGR03463 429 RVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGR-ITRAISRGVRFLRSRQREDGSFP---------- 497 (634)
T ss_pred HHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhH-HHHHHHHHHHHHHHhcCCCCCcc----------
Confidence 66 233445568899999999999988764332111111 25689999999999999999993
Q ss_pred ccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCc-------
Q 012325 288 LEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC------- 360 (466)
Q Consensus 288 l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~------- 360 (466)
+.|.+++ .+.|+.++++|..+|.... ++.|+||++||++.|++||||++.|++|
T Consensus 498 ----------g~Wg~~~--~Y~T~~al~aL~~~G~~~~-------~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~ 558 (634)
T TIGR03463 498 ----------GSWGVCF--TYGTFHGVMGLRAAGASPD-------DMALQRAAAWLRSYQRADGGWGEVYESCLQARYVE 558 (634)
T ss_pred ----------ccCCCCC--cHHHHHHHHHHHHcCCCcC-------cHHHHHHHHHHHHccCCCCCccCccCccccccccC
Confidence 3344444 5689999999999875322 3789999999999999999999988764
Q ss_pred ----ccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcc
Q 012325 361 ----FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESY 406 (466)
Q Consensus 361 ----~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~ 406 (466)
..|.|++||.||.++|.. .++.++|+++||+++|++||||.+..
T Consensus 559 ~~~S~~~~TA~Al~aL~~~g~~--~~~~i~rgi~~L~~~Q~~dG~W~~~~ 606 (634)
T TIGR03463 559 GKQSQAVMTSWALLALAEAGEG--GHDAVQRGVAWLRSRQQEDGRWPREP 606 (634)
T ss_pred CCCCcHHHHHHHHHHHHHcCCc--CCHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 357899999999999975 67899999999999999999999864
No 14
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.97 E-value=3.1e-30 Score=279.51 Aligned_cols=281 Identities=19% Similarity=0.197 Sum_probs=205.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCccc--cccchhh-HHHhhhhcc--c---cCCCcHHHHHHHHhhhcceeeeC--------
Q 012325 86 KKLREKALRNAIKHIHYEDENTRY--LCIGPVN-KVLNMLCCW--V---EDPNSEAFKLHIPRINDYLWIAE-------- 149 (466)
Q Consensus 86 ~~~r~~al~~~~~~i~~~~~~~~~--~~~~pv~-~~l~~l~~~--~---~~p~~~~~~~~~~~l~~~~~~~~-------- 149 (466)
++..+++++++.+++...+++. + .|.+||| |++.+.++. + .+.++|.++|++++|.+......
T Consensus 266 ~p~~~~~l~~l~~~~~~~~dg~-~~q~~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~ 344 (621)
T TIGR01787 266 SPAFQKHLQRIDDYLWLQLDGM-KMQGTGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVY 344 (621)
T ss_pred CHHHHHHHHHHhhcEEEeCCcc-EEecCCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhh
Confidence 5789999999988865444432 3 3688887 778776763 3 24678999999999987665431
Q ss_pred ------CCceee--cCCCCCcchHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCC--
Q 012325 150 ------DGMKVQ--GYNGSQLWDTAFAVQAIISTNL--VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAW-- 217 (466)
Q Consensus 150 ------~G~~~q--~~~~s~vwDTa~a~~AL~~ag~--~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW-- 217 (466)
+|+-++ +...++|.||+.+++++..... .+...+++++|++||+++|+++ |+|..+.+.. .+.|
T Consensus 345 ~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~d---GGw~ay~~~~-~~~~l~ 420 (621)
T TIGR01787 345 RHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSN---GGFAAYDPDN-TGEWLE 420 (621)
T ss_pred CCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCC---CCEeeecccc-chHHHH
Confidence 333232 2323699999999988654432 1223578999999999999987 5554332210 0011
Q ss_pred ---C---CccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceecccccccccccccc
Q 012325 218 ---P---FSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVL 291 (466)
Q Consensus 218 ---~---f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~ 291 (466)
+ |.+.-..+|.+|+|+.+|+||..+... .....+++++|++||++.|++||+|
T Consensus 421 ~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r------~~~~~~~i~rAl~~L~~~Q~~DGsw--------------- 479 (621)
T TIGR01787 421 LLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHR------ADEIRNVLERALEYLRREQRADGSW--------------- 479 (621)
T ss_pred HhcchhhhccccccCCCCchHHHHHHHHHHhcCc------cHhHHHHHHHHHHHHHHhcCCCCCC---------------
Confidence 1 222223467889999999999876421 1113578999999999999999999
Q ss_pred CcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCC-----------c
Q 012325 292 NPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGV-----------C 360 (466)
Q Consensus 292 ~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~-----------~ 360 (466)
||.+++++ ++.|+.++.+|..++..... .+.|+||++||++.|++||+|++.+.+ .
T Consensus 480 -----~g~wg~~y--~YgT~~al~aL~~~G~~~~~------~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S 546 (621)
T TIGR01787 480 -----FGRWGVNY--TYGTGFVLSALAAAGRTYRN------CPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGS 546 (621)
T ss_pred -----cccCCCCC--chhHHHHHHHHHHhCCcccC------CHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCC
Confidence 45565555 67899999999998764221 268999999999999999999876543 2
Q ss_pred ccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCccc
Q 012325 361 FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYL 407 (466)
Q Consensus 361 ~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~ 407 (466)
....|++||+||.+++.. ..++++||++||+++|++||||++.+.
T Consensus 547 ~~s~Ta~AL~AL~~ag~~--~~~ai~rgv~~L~~~Q~~dG~w~~~~~ 591 (621)
T TIGR01787 547 TPSQTGWALMALIAAGEA--DSEAIERGVKYLLETQRPDGDWPQEYI 591 (621)
T ss_pred CHHHHHHHHHHHHHcCcc--chHHHHHHHHHHHHhCCCCCCCCCccc
Confidence 456799999999999875 467899999999999999999998654
No 15
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.96 E-value=5.6e-28 Score=263.89 Aligned_cols=287 Identities=21% Similarity=0.262 Sum_probs=205.8
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCccc--cccchhh-HHHhhhhcc--ccC-CCcHHHHHHHHhhhcceeee---------
Q 012325 84 PGKKLREKALRNAIKHIHYEDENTRY--LCIGPVN-KVLNMLCCW--VED-PNSEAFKLHIPRINDYLWIA--------- 148 (466)
Q Consensus 84 ~~~~~r~~al~~~~~~i~~~~~~~~~--~~~~pv~-~~l~~l~~~--~~~-p~~~~~~~~~~~l~~~~~~~--------- 148 (466)
|=++..+++++++.+++...++++-+ .+.+||| |+|.+.++. +.. ..++.+++++++|.+.....
T Consensus 275 ~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~ 354 (634)
T cd02892 275 PDSPAFKRHLERIDDFLWLGPEGMKMCQTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKY 354 (634)
T ss_pred CCCHHHHHHHHHHHhcEEEecCCcEEEcCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhC
Confidence 44578999999999988644333322 2467787 888777773 322 56788999999997765411
Q ss_pred ----CCCceeec--CCCCCcchHHHHHHHHHhcCCch-----hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCC
Q 012325 149 ----EDGMKVQG--YNGSQLWDTAFAVQAIISTNLVE-----EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAW 217 (466)
Q Consensus 149 ----~~G~~~q~--~~~s~vwDTa~a~~AL~~ag~~~-----~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW 217 (466)
++|+.++. ...++++||++++.||...+... ...+.+++|++||+++|+++ |+|..+.+.. .+.|
T Consensus 355 ~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~d---Ggf~~y~~~~-~~~~ 430 (634)
T cd02892 355 RHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSN---GGFAAFEPDN-TYHW 430 (634)
T ss_pred CCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCC---CCEeeecCCC-chhh
Confidence 23333332 22367899999999999876431 23678999999999999986 6775433221 1221
Q ss_pred -----CCcc---CCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceecccccccccccc
Q 012325 218 -----PFST---ADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLE 289 (466)
Q Consensus 218 -----~f~~---~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~ 289 (466)
++.. ....+|.+|+|+.++++|..+....+... .. .++++++|++||++.|++||||
T Consensus 431 ~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r-~~-i~~~i~rAv~~L~~~Q~~DGsW------------- 495 (634)
T cd02892 431 LENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHR-RE-IDPAIRRAVKYLLREQEPDGSW------------- 495 (634)
T ss_pred HhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchH-HH-HHHHHHHHHHHHHHccCCCCCc-------------
Confidence 1111 11236789999999999988754322100 01 1468999999999999999999
Q ss_pred ccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccC-----------C
Q 012325 290 VLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW-----------G 358 (466)
Q Consensus 290 ~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~w-----------g 358 (466)
++.+.+++ ++.|+.++.+|..++..+.. ++.+++|++||++.|++||+|++.. +
T Consensus 496 -------~g~wg~~~--~Y~T~~al~AL~~~G~~~~~------~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~ 560 (634)
T cd02892 496 -------YGRWGVCY--IYGTWFALEALAAAGEDYEN------SPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGG 560 (634)
T ss_pred -------cccCCCcc--HHHHHHHHHHHHHhCCcccC------cHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCC
Confidence 34444444 67899999999998753111 3689999999999999999997532 2
Q ss_pred CcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcc
Q 012325 359 VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESY 406 (466)
Q Consensus 359 ~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~ 406 (466)
...++.|++|+.+|..+|.. +++.++++++||+++|++||+|.+..
T Consensus 561 ~s~~~~TA~AllaLl~~g~~--~~~~i~r~i~wL~~~Q~~~G~w~~~~ 606 (634)
T cd02892 561 RSTVVQTAWALLALMAAGEP--DSEAVERGIKYLLNTQLPDGDWPQEE 606 (634)
T ss_pred CCcHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 23467799999999999875 67899999999999999999999864
No 16
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.95 E-value=7e-26 Score=221.97 Aligned_cols=267 Identities=29% Similarity=0.395 Sum_probs=210.8
Q ss_pred HHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhccccCCCCCCcccccC
Q 012325 135 KLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLV----EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYR 210 (466)
Q Consensus 135 ~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~----~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~ 210 (466)
.++++.|..+ ..++|.+.++.+..++|.|+++++++...+.. .+....++++++||.+.|..+
T Consensus 2 ~~~~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~d----------- 68 (300)
T cd00688 2 EKHLKYLLRY--PYGDGHWYQSLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSD----------- 68 (300)
T ss_pred hhHHHHHHHc--cccCCCccccCCcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCC-----------
Confidence 4677888776 34566555554489999999999999998753 245788999999999999875
Q ss_pred CCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccc
Q 012325 211 HISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEV 290 (466)
Q Consensus 211 ~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~ 290 (466)
|||++..... .++++.|+.++++|..+.... ....+.++++++||++.|++||||..+......
T Consensus 69 ----G~~~~~~~~~-~~~~~~T~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~----- 132 (300)
T cd00688 69 ----GGFSGWGGND-YPSLWLTAYALKALLLAGDYI------AVDRIDLARALNWLLSLQNEDGGFREDGPGNHR----- 132 (300)
T ss_pred ----CCccCCCCCC-CcchHhHHHHHHHHHHcCCcc------ccCHHHHHHHHHHHHHccCCCCCeeeecCCCCc-----
Confidence 7888765332 689999999999998875421 245788999999999999999999865432110
Q ss_pred cCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHH
Q 012325 291 LNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVK 370 (466)
Q Consensus 291 ~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~ 370 (466)
...+.+.+..|+.++.+|..++...+ ...++++++||.++|++||+| ..|+.+.+|.|++++.
T Consensus 133 ---------~~~~~~~~~~t~~al~aL~~~~~~~~-------~~~~~~~~~~l~~~q~~~g~~-~~~~~~~~~~t~~~~~ 195 (300)
T cd00688 133 ---------IGGDESDVRLTAYALIALALLGKLDP-------DPLIEKALDYLLSCQNYDGGF-GPGGESHGYGTACAAA 195 (300)
T ss_pred ---------ccCCCCcccHHHHHHHHHHHcCCCCC-------cHHHHHHHHHHHHHhcCCCCc-CCCccccHHHHHHHHH
Confidence 01234567899999999999876421 368999999999999999999 7788889999999999
Q ss_pred HHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCC-CchhHHHHH
Q 012325 371 GLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQV-RINCCCSTL 449 (466)
Q Consensus 371 aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~-~~~~i~rgv 449 (466)
+|...|.. ..+.++++++||+++|+++|||+.... . ....+++..|++++++|+..+.. +.+.+++++
T Consensus 196 aL~~~~~~--~~~~~~~~~~~L~~~q~~~g~~~~~~~-------~--~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~ 264 (300)
T cd00688 196 ALALLGDL--DSPDAKKALRWLLSRQRPDGGWGEGRD-------R--TNKLSDSCYTEWAAYALLALGKLGDLEDAEKLV 264 (300)
T ss_pred HHHHcCCc--chHHHHHHHHHHHHhcCCCCCcCcccc-------C--CCCcCchHHHHHHHHHHHHHhhhcCcccHHHHH
Confidence 99998874 567899999999999999999987532 0 12346678999999999998764 456799999
Q ss_pred HHHHhccCC
Q 012325 450 KVTLSLERE 458 (466)
Q Consensus 450 ~~L~~~q~~ 458 (466)
+||+++|++
T Consensus 265 ~~L~~~q~~ 273 (300)
T cd00688 265 KWLLSQQNE 273 (300)
T ss_pred HHHHhccCC
Confidence 999997764
No 17
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.94 E-value=4.1e-25 Score=224.90 Aligned_cols=300 Identities=19% Similarity=0.166 Sum_probs=195.2
Q ss_pred HHHHHHHHhhcCCcccccc--chhh-HHHhhhhcc--cc-CCCcHHHHHHHHhhhccee------------eeCCCcee-
Q 012325 94 RNAIKHIHYEDENTRYLCI--GPVN-KVLNMLCCW--VE-DPNSEAFKLHIPRINDYLW------------IAEDGMKV- 154 (466)
Q Consensus 94 ~~~~~~i~~~~~~~~~~~~--~pv~-~~l~~l~~~--~~-~p~~~~~~~~~~~l~~~~~------------~~~~G~~~- 154 (466)
+++++||...|...|..+. +++. +++.++++. +. .+..+.++|++++|.+... ..++|.+.
T Consensus 2 ~~~~~~L~~~Q~~dG~W~~~~~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y 81 (348)
T cd02889 2 RRALDFLLSLQAPDGHWPGEYSQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAF 81 (348)
T ss_pred chHHHHHHHhccCCCCccccCCchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcc
Confidence 3445555555544443333 4554 555555552 32 3567789999999877531 03444332
Q ss_pred ecCC--CCCcchHHHHHHHHHhcCCc-----hhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCC------CCcc
Q 012325 155 QGYN--GSQLWDTAFAVQAIISTNLV-----EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAW------PFST 221 (466)
Q Consensus 155 q~~~--~s~vwDTa~a~~AL~~ag~~-----~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW------~f~~ 221 (466)
+... .+++.+|++++.+|.+++.. ....+.+.++++||+++|..+ |.|..+.+.. ..-| .+..
T Consensus 82 ~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~d---G~f~~~~~~~-~~~~~~~~~~~~~~ 157 (348)
T cd02889 82 STANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSN---GGFAAFEPDN-TYKYLELIPEVDGD 157 (348)
T ss_pred cCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCC---CCEeeecCCc-cHHHHhcCchhhcC
Confidence 2111 24567999999999987643 234688999999999999986 5554322110 0001 0000
Q ss_pred CCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCcc
Q 012325 222 ADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIV 301 (466)
Q Consensus 222 ~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~ 301 (466)
.....+++++|+.+|.+|..+....+.. .. -..+.++++++||++.|++||||.. .+.
T Consensus 158 ~~~~~~~~~~Ta~~l~aL~~~~~~~~~~-~~-~~~~~i~~a~~~L~~~q~~dG~w~~--------------------~~~ 215 (348)
T cd02889 158 IMIDPPYVECTGSVLEALGLFGKLYPEH-RR-EIDPAIRRAVKYLEREQEPDGSWYG--------------------RWG 215 (348)
T ss_pred CccCCCCcchHHHHHHHHHHhhhcCCch-HH-HHHHHHHHHHHHHHHhCCCCCCccc--------------------cCC
Confidence 1112467899999999998876432110 00 0136899999999999999999941 111
Q ss_pred ccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccC-----------CCcccchHHHHHH
Q 012325 302 IDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW-----------GVCFTYGTWFGVK 370 (466)
Q Consensus 302 ~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~w-----------g~~~~Y~T~~al~ 370 (466)
. +..+.|+.++.+|..++.... ++.++++++||++.|++||+|.+.. +...+..|+++|.
T Consensus 216 ~--~~~y~ta~a~~aL~~~g~~~~-------~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~ 286 (348)
T cd02889 216 V--CFIYGTWFALEALAAAGEDEN-------SPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALL 286 (348)
T ss_pred C--cchHHHHHHHHHHHHcCCCcC-------cHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHH
Confidence 1 235679999999998875311 3689999999999999999997521 1223457999999
Q ss_pred HHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCccccc--ccccccCCCCCCCchhHHHHHHHHHH
Q 012325 371 GLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSC--QKKVYSNLEGDRSHVVNTAWAMLALI 435 (466)
Q Consensus 371 aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~--~~~~y~~~~~~~s~~~~TA~ALlaL~ 435 (466)
+|...|.. +++.++++++||.++|++||||..+...+ ..+-|. ........|+|++|-
T Consensus 287 aL~~~g~~--~~~~v~~a~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 346 (348)
T cd02889 287 ALMAAGEP--DSEAVKRGVKYLLNTQQEDGDWPQEEITGVFFKNFYI-----RYHNYRNYFPLWALG 346 (348)
T ss_pred HHHhcCCC--CHHHHHHHHHHHHHhcCCCCCcCCceeeeeecceeee-----ccCccchHhHHHHhh
Confidence 99999875 67899999999999999999998864321 111111 122335678888774
No 18
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.91 E-value=5.8e-23 Score=205.02 Aligned_cols=249 Identities=19% Similarity=0.157 Sum_probs=179.7
Q ss_pred CCcchHHHHHHHHHhcCCc--------hhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchh
Q 012325 160 SQLWDTAFAVQAIISTNLV--------EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDC 231 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~--------~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~ 231 (466)
+.++=+.+++..|..++.- ++....|+++++.+++.|..| |||+.... ..+++..
T Consensus 21 ~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~r~l~~q~~d---------------Gsf~~w~~--~~~s~wl 83 (297)
T cd02896 21 IKLAPTVYALRYLDTTNQWEKLGPERRDEALKYIRQGYQRQLSYRKPD---------------GSYAAWKN--RPSSTWL 83 (297)
T ss_pred HHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHhccCCC---------------CCccCCCC--CCcchhh
Confidence 3344455677777765531 134567999999999999976 55554322 2457889
Q ss_pred hHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHH
Q 012325 232 TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTS 311 (466)
Q Consensus 232 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta 311 (466)
||.|+++|..+++. + .++++.++++++||+++|++||+|....+.. + .+..|.+.-+++.+..||
T Consensus 84 TA~v~~~l~~a~~~-----~-~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~--------~-~~m~gg~~~~~~~~~lTA 148 (297)
T cd02896 84 TAFVVKVFSLARKY-----I-PVDQNVICGSVNWLISNQKPDGSFQEPSPVI--------H-REMTGGVEGSEGDVSLTA 148 (297)
T ss_pred HHHHHHHHHHHHHc-----C-CCCHHHHHHHHHHHHhcCCCCCeeCCCCCcc--------C-hhccCCccccCCCccchH
Confidence 99999999887542 1 4578899999999999999999998532110 0 011122111246688999
Q ss_pred HHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHH
Q 012325 312 ASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEF 391 (466)
Q Consensus 312 ~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~ 391 (466)
.|+.+|...+...+.. ..++.+.|.||++||.++|++ .++.|+++.+..||..+|.+ ...++.++
T Consensus 149 ~vl~aL~~~~~~~~~~-~~~~~~~i~rA~~yL~~~~~~---------~~~~Y~~Al~ayALal~~~~-----~~~~a~~~ 213 (297)
T cd02896 149 FVLIALQEARSICPPE-VQNLDQSIRKAISYLENQLPN---------LQRPYALAITAYALALADSP-----LSHAANRK 213 (297)
T ss_pred HHHHHHHhhhcccccc-chhhHHHHHHHHHHHHHhccc---------CCChHHHHHHHHHHHHcCCh-----hhHHHHHH
Confidence 9999999987543221 123457899999999998854 46799999999999988653 67899999
Q ss_pred HHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 392 LLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 392 Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
|++.|+.||||++.+.+ .++.+.+..+...++++||||||+|+..+. .+.+.++|+||.++|+.
T Consensus 214 L~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~vE~TAYALLall~~~~--~~~a~~iv~WL~~qr~~ 277 (297)
T cd02896 214 LLSLAKRDGNGWYWWTI-DSPYWPVPGPSAITVETTAYALLALLKLGD--IEYANPIARWLTEQRNY 277 (297)
T ss_pred HHHHhhhCCCcceeccC-cCccCCCCCCchhhhHHHHHHHHHHHhcCC--chhHHHHHHHHHhcCCC
Confidence 99999999999987655 233333211122378999999999999984 45799999999999875
No 19
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.91 E-value=9.6e-23 Score=203.05 Aligned_cols=247 Identities=16% Similarity=0.092 Sum_probs=176.6
Q ss_pred CCcchHHHHHHHHHhcCC-chhh----HHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHH
Q 012325 160 SQLWDTAFAVQAIISTNL-VEEY----GATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSE 234 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~-~~~~----~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~ 234 (466)
+.++=..++...|..++. .++. ...|+++++.|++.|..| |||++.......+++..||.
T Consensus 21 ~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~d---------------Gsf~~w~~~~~~~~~wlTa~ 85 (292)
T cd02897 21 VNFAPNIYVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSD---------------GSYSAFGESDKSGSTWLTAF 85 (292)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCC---------------CCeecccCCCCCcchhhHHH
Confidence 444555567777777763 3221 233666777777788876 55554322223467889999
Q ss_pred HHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHH
Q 012325 235 GLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASI 314 (466)
Q Consensus 235 al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl 314 (466)
|+++|..+.. +..++++.|++|++||+++|++||||+.++..... .+. + .+.+.++.|+.|+
T Consensus 86 v~~~L~~a~~------~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~----~~~-----~---~~~~~~~~TA~vl 147 (292)
T cd02897 86 VLKSFAQARP------FIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHK----AMQ-----G---GVDDEVALTAYVL 147 (292)
T ss_pred HHHHHHHHhc------cCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccCh----hhc-----C---CCCCCcchHHHHH
Confidence 9999987653 12456889999999999999999999876432100 000 0 1235578999999
Q ss_pred HHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHh
Q 012325 315 QALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLS 394 (466)
Q Consensus 315 ~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~ 394 (466)
.+|...+.. .+ .+.|+||++||.+.+.+ ++++|+++.+..||..+|.. ....+.+.+.++..
T Consensus 148 ~aL~~~g~~--~~-----~~~i~~a~~yL~~~~~~---------~~~~y~~al~a~AL~~~~~~--~~~~~~~~l~~~~~ 209 (292)
T cd02897 148 IALLEAGLP--SE-----RPVVEKALSCLEAALDS---------ISDPYTLALAAYALTLAGSE--KRPEALKKLDELAI 209 (292)
T ss_pred HHHHhcCCc--cc-----cHHHHHHHHHHHHhccc---------CCCHHHHHHHHHHHHHcCCc--cHHHHHHHHHHHHh
Confidence 999998753 22 47899999999998764 56899999999999999843 34455556667777
Q ss_pred ccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 395 KQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 395 ~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
.++.+|+|++++.++....|.+ .+..+++..||||||+|+.++.++.+.+.++++||.++|+.
T Consensus 210 ~~~~~~~W~~~~~~~~~~~~~~-~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q~~ 272 (292)
T cd02897 210 SEDGTKHWSRPPPSEEGPSYYW-QAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQRNS 272 (292)
T ss_pred ccCCCCCCCcCCCcccccccCC-CCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcCCC
Confidence 7888899998765555445543 12356889999999999999865567899999999998864
No 20
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.90 E-value=4.1e-22 Score=195.22 Aligned_cols=244 Identities=25% Similarity=0.257 Sum_probs=180.3
Q ss_pred CCcHHHHHHHHhhhcceeeeCCCceee-cCC-CCCcchHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHhccccCCCCCCc
Q 012325 129 PNSEAFKLHIPRINDYLWIAEDGMKVQ-GYN-GSQLWDTAFAVQAIISTNLV-EEYGATLKKAHKYIKDSQVLEDCPGNL 205 (466)
Q Consensus 129 p~~~~~~~~~~~l~~~~~~~~~G~~~q-~~~-~s~vwDTa~a~~AL~~ag~~-~~~~~~l~~a~~wL~~~Q~~~~~~Gdw 205 (466)
.....+++++++|.+. +.++|.+.. +.. .+++|+|++++++|...+.. ....+.++++++||++.|..+ |.|
T Consensus 49 ~~~~~~~~~~~~l~~~--q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~d---G~~ 123 (300)
T cd00688 49 KADENIEKGIQRLLSY--QLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNED---GGF 123 (300)
T ss_pred cchHHHHHHHHHHHhc--cCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCC---CCe
Confidence 4567799999999887 356664322 222 57899999999999998753 122578999999999999976 455
Q ss_pred ccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceecccccccc
Q 012325 206 DFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSY 285 (466)
Q Consensus 206 ~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~ 285 (466)
....+...+ .....+++++|+.++.+|..++.. ...+.+.++++||.+.|++||||..
T Consensus 124 ~~~~~~~~~-------~~~~~~~~~~t~~al~aL~~~~~~--------~~~~~~~~~~~~l~~~q~~~g~~~~------- 181 (300)
T cd00688 124 REDGPGNHR-------IGGDESDVRLTAYALIALALLGKL--------DPDPLIEKALDYLLSCQNYDGGFGP------- 181 (300)
T ss_pred eeecCCCCc-------ccCCCCcccHHHHHHHHHHHcCCC--------CCcHHHHHHHHHHHHHhcCCCCcCC-------
Confidence 432221110 112357889999999999876531 1157899999999999999999910
Q ss_pred ccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccC----CCcc
Q 012325 286 PWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW----GVCF 361 (466)
Q Consensus 286 ~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~w----g~~~ 361 (466)
+ ..+++..|+.++.+|..++... ...++++++||++.|.+||+|...+ ....
T Consensus 182 ------------~----~~~~~~~t~~~~~aL~~~~~~~--------~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~ 237 (300)
T cd00688 182 ------------G----GESHGYGTACAAAALALLGDLD--------SPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSD 237 (300)
T ss_pred ------------C----ccccHHHHHHHHHHHHHcCCcc--------hHHHHHHHHHHHHhcCCCCCcCccccCCCCcCc
Confidence 0 1134678999999999887531 3679999999999999999997654 2334
Q ss_pred cchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHH
Q 012325 362 TYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID 436 (466)
Q Consensus 362 ~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ 436 (466)
.+.|.+++.+|...+.. ...+.++++++||++.|+++|||+... ...+....|+|||+||..
T Consensus 238 ~~~~~~~~~aL~~~~~~-~~~~~~~~~~~~L~~~q~~~G~w~~~~------------~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 238 SCYTEWAAYALLALGKL-GDLEDAEKLVKWLLSQQNEDGGFSSKP------------GKSYDTQHTVFALLALSL 299 (300)
T ss_pred hHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHhccCCCCCcCcCC------------CCCCcchhhHHHHHHHhc
Confidence 56678888899888753 346788999999999999999998642 223456789999999964
No 21
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.80 E-value=1.3e-18 Score=172.75 Aligned_cols=184 Identities=22% Similarity=0.186 Sum_probs=149.8
Q ss_pred CCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhc-cCCCceeccccccccccccccCcccccCCccccCC
Q 012325 227 PISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQ-NADGGFATYELMRSYPWLEVLNPAETFGDIVIDYP 305 (466)
Q Consensus 227 pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Q-n~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~ 305 (466)
+.+..|-.+|.+|..++. .+....++++++||+++| ++||||+... .+++
T Consensus 25 ~~~~~~y~~l~~l~ll~~--------~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~---------------------~~~~ 75 (286)
T cd02890 25 SRLWLLYWILSSLDLLGE--------DLDDENKDEIIDFIYSCQVNEDGGFGGGP---------------------GQDP 75 (286)
T ss_pred hHHHHHHHHHHHHHHhCC--------CcchHHHHHHHHHHHHhhcCCCCCCCCCC---------------------CCCc
Confidence 456677778877776642 345788999999999999 9999997431 1345
Q ss_pred CCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCcccc-CCCcccchHHHHHHHHHHccCCCCCcHH
Q 012325 306 CVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGS-WGVCFTYGTWFGVKGLVAAGMNYSNSSS 384 (466)
Q Consensus 306 ~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~-wg~~~~Y~T~~al~aL~~~g~~~~~~~~ 384 (466)
++..|..++.+|..++.. .+. ...++++++||.+.|++||+|.+. ++..+++.|..|+.+|...|.. ..+.
T Consensus 76 ~~~~T~~al~~l~llg~~--~~~----~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~--~~~~ 147 (286)
T cd02890 76 HLASTYAAVLSLAILGDD--ALS----RIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNIL--TDID 147 (286)
T ss_pred cHHHHHHHHHHHHHcCcc--ccc----hhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCc--hhhh
Confidence 677899999999999852 011 134678999999999999999775 5667889999999999999876 3678
Q ss_pred HHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCCc
Q 012325 385 IRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLEREF 459 (466)
Q Consensus 385 i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~~ 459 (466)
+++.++||+++|++||||++. ++..|++..|+||+.+|...+..+...+++.++||++.|...
T Consensus 148 ~~~~~~~l~~~Q~~dGGf~~~------------~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ 210 (286)
T cd02890 148 KEKLIDYILSCQNYDGGFGGV------------PGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLAS 210 (286)
T ss_pred HHHHHHHHHHhCCCCCCcCCC------------CCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCC
Confidence 999999999999999999974 245688889999999999999887778999999999998743
No 22
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.80 E-value=4.2e-18 Score=169.16 Aligned_cols=253 Identities=16% Similarity=0.135 Sum_probs=185.3
Q ss_pred HHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCCCCCCcccccCCCC
Q 012325 135 KLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQ-VLEDCPGNLDFWYRHIS 213 (466)
Q Consensus 135 ~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q-~~~~~~Gdw~~~~~~~~ 213 (466)
++|++.|.+.+- ......+....+.+|-|-+++.+|.-.|.... ....+++++||+++| +.+
T Consensus 2 ~~h~~~l~~~~~--~~~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~-~~~~~~~i~~l~~~q~~~~-------------- 64 (286)
T cd02890 2 EKHIKYLQRCLK--LLPSSYTSLDASRLWLLYWILSSLDLLGEDLD-DENKDEIIDFIYSCQVNED-------------- 64 (286)
T ss_pred hHHHHHHHHHhh--cCChhhhhHHhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHhhcCCC--------------
Confidence 477777777633 33444445557889999999999988876322 567899999999999 764
Q ss_pred CCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCc
Q 012325 214 KGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNP 293 (466)
Q Consensus 214 ~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~ 293 (466)
|||++.. ...+++..|..++.+|..++.. .......+++++||.++|++||||..-.
T Consensus 65 -Ggf~~~~--~~~~~~~~T~~al~~l~llg~~-------~~~~~~~~~~~~~l~~~q~~dGgf~~~~------------- 121 (286)
T cd02890 65 -GGFGGGP--GQDPHLASTYAAVLSLAILGDD-------ALSRIDREKIYKFLSSLQNPDGSFRGDL------------- 121 (286)
T ss_pred -CCCCCCC--CCCccHHHHHHHHHHHHHcCcc-------ccchhhHHHHHHHHHHhcCCCCCcccCC-------------
Confidence 7877753 4568899999999999877531 0123346789999999999999996311
Q ss_pred ccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCC-CcccchHHHHHHHH
Q 012325 294 AETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG-VCFTYGTWFGVKGL 372 (466)
Q Consensus 294 ~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg-~~~~Y~T~~al~aL 372 (466)
. ..+.+..|-.++.+|..++... +..+++.++||++.|++||+|.++-+ ....-.|++|+.+|
T Consensus 122 ---~-----~~~d~~~ty~al~~l~ll~~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL 185 (286)
T cd02890 122 ---G-----GEVDTRFVYCALSILSLLNILT--------DIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASL 185 (286)
T ss_pred ---C-----CCchHHHHHHHHHHHHHhCCch--------hhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHH
Confidence 0 1122445667888888876531 24689999999999999999987543 24445589999999
Q ss_pred HHccCCCCCcHHHHHHHHHHHhccCCCC-CCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 012325 373 VAAGMNYSNSSSIRKACEFLLSKQRPSG-GWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKV 451 (466)
Q Consensus 373 ~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG-gWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~ 451 (466)
...|.. ....+++.++||+++|+.+| |+... ++..+++..|-|++-+|...+.......++-.+|
T Consensus 186 ~~l~~~--~~~~~~~~~~~L~~~q~~~ggGf~g~------------~~~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~ 251 (286)
T cd02890 186 ALLGRL--DLIDKERLLRWLVERQLASGGGFNGR------------PNKLVDTCYSFWVGASLKILGRLHLIDQEKLREY 251 (286)
T ss_pred HHcCCC--cccCHHHHHHHHHHhCCCCCCCcCCC------------CCCCCccchhhHHHHHHHHcccccccCHHHHHHH
Confidence 999875 46678999999999999998 66432 1234667788999988888876533446788889
Q ss_pred HH-hccC
Q 012325 452 TL-SLER 457 (466)
Q Consensus 452 L~-~~q~ 457 (466)
|+ .+|.
T Consensus 252 l~~~~q~ 258 (286)
T cd02890 252 ILSCQQS 258 (286)
T ss_pred HHhhcCC
Confidence 99 4444
No 23
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.78 E-value=1.2e-17 Score=166.80 Aligned_cols=226 Identities=15% Similarity=0.083 Sum_probs=162.8
Q ss_pred HHHHHHhhhcceeeeCCCce-eecCCCCCcchHHHHHHHHHhcCCchh-hHHHHHHHHHHHHhccccCCCCCCcccccCC
Q 012325 134 FKLHIPRINDYLWIAEDGMK-VQGYNGSQLWDTAFAVQAIISTNLVEE-YGATLKKAHKYIKDSQVLEDCPGNLDFWYRH 211 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~~G~~-~q~~~~s~vwDTa~a~~AL~~ag~~~~-~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~ 211 (466)
++++++++..+ ...||.+ .-+.+.+++|.|++++.+|.+++.... ..+.++++++||+++|..+ |+|....+-
T Consensus 54 i~~g~~r~l~~--q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~d---G~f~e~~~~ 128 (297)
T cd02896 54 IRQGYQRQLSY--RKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPD---GSFQEPSPV 128 (297)
T ss_pred HHHHHHHHHhc--cCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCC---CeeCCCCCc
Confidence 67888888877 4566632 223347899999999999988753211 1478999999999999876 888765432
Q ss_pred CC---CCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccc
Q 012325 212 IS---KGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWL 288 (466)
Q Consensus 212 ~~---~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l 288 (466)
.. .||+.. ..++++.||.|+.+|...+...+.. .......+.+|++||.++|++-
T Consensus 129 ~~~~m~gg~~~-----~~~~~~lTA~vl~aL~~~~~~~~~~--~~~~~~~i~rA~~yL~~~~~~~--------------- 186 (297)
T cd02896 129 IHREMTGGVEG-----SEGDVSLTAFVLIALQEARSICPPE--VQNLDQSIRKAISYLENQLPNL--------------- 186 (297)
T ss_pred cChhccCCccc-----cCCCccchHHHHHHHHhhhcccccc--chhhHHHHHHHHHHHHHhcccC---------------
Confidence 22 234421 2367899999999998865422110 0113568999999999977530
Q ss_pred cccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCC----------
Q 012325 289 EVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG---------- 358 (466)
Q Consensus 289 ~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg---------- 358 (466)
.+++.++.+..||+..+. +...++.++|.+.|+.||+|...|.
T Consensus 187 ----------------~~~Y~~Al~ayALal~~~-----------~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (297)
T cd02896 187 ----------------QRPYALAITAYALALADS-----------PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPG 239 (297)
T ss_pred ----------------CChHHHHHHHHHHHHcCC-----------hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCC
Confidence 125567888888888763 3678999999999999999864321
Q ss_pred Cc--ccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHH
Q 012325 359 VC--FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID 436 (466)
Q Consensus 359 ~~--~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ 436 (466)
.. .+-.|++||.+|...|.. +.+.++++||.+.|+.+|||+.+ =-|..||.||.+
T Consensus 240 ~~~~~vE~TAYALLall~~~~~----~~a~~iv~WL~~qr~~~Ggf~sT-------------------QdTvval~AL~~ 296 (297)
T cd02896 240 PSAITVETTAYALLALLKLGDI----EYANPIARWLTEQRNYGGGFGST-------------------QDTVVALQALAE 296 (297)
T ss_pred CchhhhHHHHHHHHHHHhcCCc----hhHHHHHHHHHhcCCCCCCeehH-------------------HHHHHHHHHHhc
Confidence 11 345699999999998743 47889999999999999999752 248999999874
No 24
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.78 E-value=1.5e-18 Score=181.85 Aligned_cols=369 Identities=16% Similarity=0.144 Sum_probs=228.2
Q ss_pred CceecchhHHHHHHHhcCCCcccCCcchhhhhhhcccCCCCCCChh---hhhcc-c-ccccCCCCCchHHHHHHH-HHHH
Q 012325 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWN---EARNL-C-AKEDLYYPHPLIQDVLWA-TLDK 74 (466)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~---~~r~~-~-~~~d~~~~~~~~~~~~~~-~~~~ 74 (466)
+|++.+.++.||.+.+.++.-.+.-..|.-++++.++..++.+... ..+-+ + -+--.|.-.+|..+.+-. .+..
T Consensus 272 ygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn~~akeDlyyphs~i~D~l~~~l~~~~e~ll~rWp~~~~R~~a~~~ 351 (760)
T KOG0497|consen 272 YGKRFVAPPTPLILQLREELYPEPYDKINWSKARNLCAKEDLYYPHSLLQDLLWALLHKFSEPLLNRWPLKLIREKALRT 351 (760)
T ss_pred eeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhhccccccccCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 5788999999999999999887777777788889988887665410 00000 0 000001111222111100 0111
Q ss_pred HHhhh-------------------------hcCCCChHHHHHHHHHHHHHHH-hhcCCccccccc-hhh-HHHhhhhccc
Q 012325 75 VVEPL-------------------------LMHWPGKKLREKALRNAIKHIH-YEDENTRYLCIG-PVN-KVLNMLCCWV 126 (466)
Q Consensus 75 ~~~~~-------------------------~~~~~~~~~r~~al~~~~~~i~-~~~~~~~~~~~~-pv~-~~l~~l~~~~ 126 (466)
.+|-+ ... |.+...++-+.++.++|- .+|+- ...+.+ -+| +++++-++..
T Consensus 352 ~me~ihyede~t~yi~ig~v~k~~~ml~cwved-p~s~~Fkkhl~Ri~d~lw~gedGm-kmq~~~sQ~Wdt~falqalla 429 (760)
T KOG0497|consen 352 AMELIHYEDENTRYITIGPVNKAFNMLACWVED-PNSDAFKKHLARIPDFLWIAEDGM-KMQGFNSQLWDTAFALQALLA 429 (760)
T ss_pred HHHHhhhhhcccCceecccchhhhcceeeeeec-cchHHHHHHhccccCeEEEcCCCc-eEeecchhHHHHHHHHHHHHh
Confidence 11111 011 333333333333333321 11111 111222 233 4444333322
Q ss_pred cCCC---cHHHHHHHHhhhcceee-eCCC----ceeec----------CCCCCcch-HHHHHHHHHhcCCc--------h
Q 012325 127 EDPN---SEAFKLHIPRINDYLWI-AEDG----MKVQG----------YNGSQLWD-TAFAVQAIISTNLV--------E 179 (466)
Q Consensus 127 ~~p~---~~~~~~~~~~l~~~~~~-~~~G----~~~q~----------~~~s~vwD-Ta~a~~AL~~ag~~--------~ 179 (466)
..++ .+.++++-+.+..-.+. ++.| |..+. ..+.+|-| ||-++....-.+.. -
T Consensus 430 ~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaEal~~~lll~~~~~~~vg~~~ 509 (760)
T KOG0497|consen 430 AGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAEALKCCLLLSSMPSEIVGEKI 509 (760)
T ss_pred cCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHHHHHHHHHhcCCChhhccCCC
Confidence 2333 23456777766544332 2222 11121 13456666 66555333222221 1
Q ss_pred hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCC--------CCccCCCCCCCchhhHHHHHHhHhhhcccccccC
Q 012325 180 EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAW--------PFSTADHGWPISDCTSEGLKASLLLSKLSSAIVG 251 (466)
Q Consensus 180 ~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW--------~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g 251 (466)
+ .+.+-.|++.|+..|+.+ |+...+.+ .+.+-| .|.+....++.+.||..++.||....+..+....
T Consensus 510 ~-~erL~dav~~Ll~lq~~~---Gg~~~~e~-~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~ 584 (760)
T KOG0497|consen 510 D-VERLYDAVDVLLYLQSEN---GGFAAYEP-ARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRK 584 (760)
T ss_pred C-HHHHHHHHHHHHhhhhcc---Cccccccc-cchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHH
Confidence 2 567999999999999765 65554433 122223 2334444568899999999999988765543322
Q ss_pred CccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhh
Q 012325 252 EPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQED 331 (466)
Q Consensus 252 ~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~ 331 (466)
..+ ...|.+|++||.++|.+||+| +|+|.++. .+.|..++.+|...|+.+...
T Consensus 585 ~Ei-~~~i~~av~~ie~~Q~~DGSW--------------------yGsWgvCF--tY~t~Fa~~gl~aaGkty~nc---- 637 (760)
T KOG0497|consen 585 KEI-EKSIEKAVEFIEKLQLPDGSW--------------------YGSWGVCF--TYGTWFALRGLAAAGKTYENC---- 637 (760)
T ss_pred HHH-HHHHHHHHHHHHHcCCCCCcc--------------------cchhhHHH--HHHHHHhcchhhhcchhhhcc----
Confidence 222 678999999999999999999 78999998 779999999999999876543
Q ss_pred hHHHHHHHHHHHHHhcccCCCccccCCCcc-------------cchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCC
Q 012325 332 VDHCIKRAVKFIEKIQELDGSWYGSWGVCF-------------TYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRP 398 (466)
Q Consensus 332 i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~-------------~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 398 (466)
.+++||++||++.|++||+|+++.-.|. +-+|++|+++|..+|....+.-.+.||++.|...|.+
T Consensus 638 --~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~ 715 (760)
T KOG0497|consen 638 --EAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLE 715 (760)
T ss_pred --HHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccc
Confidence 6899999999999999999998765442 3469999999999998744444889999999999999
Q ss_pred CCCCCCc
Q 012325 399 SGGWGES 405 (466)
Q Consensus 399 DGgWge~ 405 (466)
+|.|+..
T Consensus 716 nGdfpqq 722 (760)
T KOG0497|consen 716 NGDFPQQ 722 (760)
T ss_pred cCCcchh
Confidence 9999864
No 25
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.75 E-value=1.1e-16 Score=159.21 Aligned_cols=248 Identities=19% Similarity=0.146 Sum_probs=165.3
Q ss_pred HHhhhhccccCCCcHHHHHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc
Q 012325 118 VLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQV 197 (466)
Q Consensus 118 ~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~ 197 (466)
+++.|.+.+. ++.-..++++++|.+.+-...+|+.......+.+.-|-.++.+|.-.+..+.+++..+++++||.+.|+
T Consensus 36 ~l~~l~lL~~-~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~ 114 (287)
T cd02894 36 GLTALDLLGQ-LERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQN 114 (287)
T ss_pred HHHHHHHhCC-CchhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcC
Confidence 4444444432 222235788888877531123344333333456666777777776544223344568999999999998
Q ss_pred cCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCcee
Q 012325 198 LEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFA 277 (466)
Q Consensus 198 ~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~ 277 (466)
.+ |||..+.. +-+|+--|-.|+.+|..+... ....++++++||+++|++||||+
T Consensus 115 ~d---------------Ggf~~~~~--~e~d~~~ty~a~~~l~ll~~~---------~~i~~~~~~~~l~~~q~~dGGF~ 168 (287)
T cd02894 115 ED---------------GSFSGDKW--GEVDTRFSYCAVLCLTLLGKL---------DLIDVDKAVDYLLSCYNFDGGFG 168 (287)
T ss_pred CC---------------CCeecCCC--CCchHHHHHHHHHHHHHhCCc---------chhhHHHHHHHHHHcCCCCCCcC
Confidence 76 67765421 212332266666555544321 12347999999999999999996
Q ss_pred ccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccC
Q 012325 278 TYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW 357 (466)
Q Consensus 278 ~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~w 357 (466)
.-. + ..+.+-.|..++.+|..++.... .-+++.++||.+.|.++|+|.++-
T Consensus 169 ~~~-~--------------------~es~~~~t~cavasL~llg~~~~--------~~~~~~~~~L~~~q~~~GGf~gr~ 219 (287)
T cd02894 169 CRP-G--------------------AESHAGQIFCCVGALAILGSLDL--------IDRDRLGWWLCERQLPSGGLNGRP 219 (287)
T ss_pred CCC-C--------------------CCCchhHHHHHHHHHHHcCcccc--------cCHHHHHHHHHHhCCCCCCcCCCC
Confidence 311 0 11234457888889998876422 238889999999999999998765
Q ss_pred C-CcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhcc-CCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHH
Q 012325 358 G-VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQ-RPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALI 435 (466)
Q Consensus 358 g-~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q-~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~ 435 (466)
+ ...++-|++++.+|...|.. .-...++..+||+++| .++|||... ++..+++.+|.|+|.+|.
T Consensus 220 ~k~~D~~ysf~~~a~l~~l~~~--~~~~~~~l~~~l~~~q~~~~GGf~~~------------p~~~~D~~ht~~~l~~Ls 285 (287)
T cd02894 220 EKLPDVCYSWWVLSSLKIIGRL--HWINKNKLKNFILACQDEEDGGFADR------------PGNMVDVFHTFFGLAGLS 285 (287)
T ss_pred CCCCchhHhhHHHHHHHHhccc--cccCHHHHHHHHHHhcCCCCCCcCCC------------CCCCCChhHHHHHHHHHH
Confidence 4 35677789999999888765 2223778999999999 579999753 244678999999999986
No 26
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.75 E-value=1.1e-16 Score=159.48 Aligned_cols=224 Identities=16% Similarity=0.107 Sum_probs=150.0
Q ss_pred HHHHHHhhhcceeeeCCCcee-ecC--CCCCcchHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHhccccCCCCCCccccc
Q 012325 134 FKLHIPRINDYLWIAEDGMKV-QGY--NGSQLWDTAFAVQAIISTNLV-EEYGATLKKAHKYIKDSQVLEDCPGNLDFWY 209 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~~G~~~-q~~--~~s~vwDTa~a~~AL~~ag~~-~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~ 209 (466)
++.++.++..+ +..||.+- -+. ..+.+|-|++++.+|.+++.. .-.+..|++|++||+++|..+ |.|....
T Consensus 51 l~~g~~~~~~~--q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~d---G~f~~~~ 125 (292)
T cd02897 51 LRTGYQRQLTY--KHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSN---GCFREVG 125 (292)
T ss_pred HHHHHHHHHhc--cCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCC---CCCCCCC
Confidence 44555555555 56677432 121 257899999999999987521 112578999999999999876 4443211
Q ss_pred CCCCCCCCCCcc-CCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccc
Q 012325 210 RHISKGAWPFST-ADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWL 288 (466)
Q Consensus 210 ~~~~~GGW~f~~-~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l 288 (466)
+ +-... .....+.++.||.++.||...+. ....+.+++|++||.+.+.+
T Consensus 126 ~------~~~~~~~~~~~~~~~~TA~vl~aL~~~g~--------~~~~~~i~~a~~yL~~~~~~---------------- 175 (292)
T cd02897 126 R------VFHKAMQGGVDDEVALTAYVLIALLEAGL--------PSERPVVEKALSCLEAALDS---------------- 175 (292)
T ss_pred c------ccChhhcCCCCCCcchHHHHHHHHHhcCC--------ccccHHHHHHHHHHHHhccc----------------
Confidence 1 00000 00112457899999999987542 12467899999999997654
Q ss_pred cccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCcccc-----C------
Q 012325 289 EVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGS-----W------ 357 (466)
Q Consensus 289 ~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~-----w------ 357 (466)
+ .+++.|+.+..||...+. +. ...+.+.+.++...++.+|.|... +
T Consensus 176 -------------~--~~~y~~al~a~AL~~~~~--~~------~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 232 (292)
T cd02897 176 -------------I--SDPYTLALAAYALTLAGS--EK------RPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQ 232 (292)
T ss_pred -------------C--CCHHHHHHHHHHHHHcCC--cc------HHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCC
Confidence 0 125678899999998872 21 123444566666667777888531 1
Q ss_pred C-CcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHH
Q 012325 358 G-VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID 436 (466)
Q Consensus 358 g-~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ 436 (466)
+ ...+-.|++||++|...+.+ ..+.+.++++||.+.|+++|||+.+ =.|++||.||.+
T Consensus 233 ~~~~~ve~TAyaLlall~~~~~--~~~~~~~~v~WL~~~q~~~Ggf~sT-------------------Qdt~~al~AL~~ 291 (292)
T cd02897 233 APSAEVEMTAYALLALLSAGGE--DLAEALPIVKWLAKQRNSLGGFSST-------------------QDTVVALQALAK 291 (292)
T ss_pred CCcchHHHHHHHHHHHHHcCCc--cHhHHHHHHHHHHHcCCCCCCcccH-------------------HHHHHHHHHHHc
Confidence 0 11233499999999998742 4578889999999999999999753 258999999975
No 27
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.73 E-value=4e-16 Score=155.13 Aligned_cols=255 Identities=18% Similarity=0.158 Sum_probs=175.1
Q ss_pred HHHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCC
Q 012325 134 FKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~ 213 (466)
+.+|++.+++.+-. ......+....+-+|-|=+++.+|.-.|..+. -..++.++||+++|... .
T Consensus 3 ~~~h~~y~~~~~~~-~~~~~~~~~~~~r~~~~y~~l~~l~lL~~~~~--~~~~~~i~fl~~~q~~~--~----------- 66 (287)
T cd02894 3 LEKHIEYILSLTKK-KDDYEYILTEHLRMSGIYWGLTALDLLGQLER--LNREEIIEFVKSCQDNE--D----------- 66 (287)
T ss_pred HHHHHHHHHHhccc-cCChhhhhHHhhHHHHHHHHHHHHHHhCCCch--hhHHHHHHHHHHHhcCC--C-----------
Confidence 46788888776432 11222223334567777888888877775442 34689999999999532 1
Q ss_pred CCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCc
Q 012325 214 KGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNP 293 (466)
Q Consensus 214 ~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~ 293 (466)
||+.-.. ..-|++-.|-.++.+|..+...+ .+ ++..+++++||.++|++||||+.-.
T Consensus 67 -GgF~~~~--~~~~~~~~t~~a~~~L~ll~~~~------~i-~~~~~~~~~~i~~~q~~dGgf~~~~------------- 123 (287)
T cd02894 67 -GGFGGSP--GHDPHILSTLSAIQILALYDLLN------KI-DENKEKIAKFIKGLQNEDGSFSGDK------------- 123 (287)
T ss_pred -CCCCCCC--CCcchHHHHHHHHHHHHHhhhhh------hc-cHHHHHHHHHHHHHcCCCCCeecCC-------------
Confidence 5555432 22255666777777776553211 12 3357889999999999999996321
Q ss_pred ccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccC-CCcccchHHHHHHHH
Q 012325 294 AETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW-GVCFTYGTWFGVKGL 372 (466)
Q Consensus 294 ~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~w-g~~~~Y~T~~al~aL 372 (466)
.+. +.+..|-.++.+|..++... ...++++++||.+.|++||+|.++- +...+-.|++|+.+|
T Consensus 124 ---~~e-----~d~~~ty~a~~~l~ll~~~~--------~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL 187 (287)
T cd02894 124 ---WGE-----VDTRFSYCAVLCLTLLGKLD--------LIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGAL 187 (287)
T ss_pred ---CCC-----chHHHHHHHHHHHHHhCCcc--------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHH
Confidence 111 11223666666777665321 1247999999999999999998764 334555689999999
Q ss_pred HHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012325 373 VAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVT 452 (466)
Q Consensus 373 ~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L 452 (466)
...|.. +...+++.++||+++|+++||++.. ++..+++..|-|++-+|...+..+-...++..+||
T Consensus 188 ~llg~~--~~~~~~~~~~~L~~~q~~~GGf~gr------------~~k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l 253 (287)
T cd02894 188 AILGSL--DLIDRDRLGWWLCERQLPSGGLNGR------------PEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFI 253 (287)
T ss_pred HHcCcc--cccCHHHHHHHHHHhCCCCCCcCCC------------CCCCCchhHhhHHHHHHHHhccccccCHHHHHHHH
Confidence 999875 3345889999999999999998653 13356778899999888887765434488999999
Q ss_pred HhccC
Q 012325 453 LSLER 457 (466)
Q Consensus 453 ~~~q~ 457 (466)
++.|.
T Consensus 254 ~~~q~ 258 (287)
T cd02894 254 LACQD 258 (287)
T ss_pred HHhcC
Confidence 99884
No 28
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.73 E-value=5.1e-18 Score=144.44 Aligned_cols=109 Identities=32% Similarity=0.475 Sum_probs=85.2
Q ss_pred HHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHH--HH
Q 012325 263 VNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKR--AV 340 (466)
Q Consensus 263 v~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~r--a~ 340 (466)
|+||+++||+||||+.+ ..++.+..|+.+|.+|..++...+ .++ |+
T Consensus 1 v~~L~~~Q~~dGgw~~~----------------------~~~~~~~~T~~al~aL~~~g~~~~----------~~~~~~~ 48 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF----------------------GGPSDVWDTAFALLALAALGEEPD----------RDRAAAV 48 (113)
T ss_dssp HHHHHHHB-TTSSBBSS----------------------TS-BEHHHHHHHHHHHHHHTSHHC----------HHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC----------------------CCCCCHHHHHHHHHHHHHhCCccc----------HHHHHHH
Confidence 68999999999999853 123557889999999999986421 333 59
Q ss_pred HHHHHhcccCCCccccC--CCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCC
Q 012325 341 KFIEKIQELDGSWYGSW--GVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGE 404 (466)
Q Consensus 341 ~~L~~~Q~~DG~W~g~w--g~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge 404 (466)
+||++.|++||+|.... ..+++|.|+.++.+|...+.. ...+.++|+++||+++|++||||+.
T Consensus 49 ~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~-~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 49 EWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRP-DDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-G-GCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCC-cccHHHHHHHHHHHHhcCCCCCCCc
Confidence 99999999999998765 345788999999999999886 3358899999999999999999973
No 29
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.72 E-value=2.3e-16 Score=158.55 Aligned_cols=206 Identities=21% Similarity=0.243 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHH
Q 012325 183 ATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDS 262 (466)
Q Consensus 183 ~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~a 262 (466)
-.++|.++||.+.|... |.|.....+.. -+-.+-.++.+|..++.. .....++.
T Consensus 8 l~~~kh~~yl~~~~~~~---------------~~~~~~~~~~~--r~~~~y~~l~~L~lL~~~---------~~~~~~~~ 61 (316)
T PLN03201 8 LVVDKHVRYIKSLEKKK---------------DSFESVVMEHL--RMNGAYWGLTALDLLGKL---------DDVDRDEV 61 (316)
T ss_pred ccHHHHHHHHHHhCCCC---------------CCccccccccc--hHHHHHHHHHHHHHhCCC---------ccccHHHH
Confidence 34788999999988742 44432211111 111233356566555431 12335889
Q ss_pred HHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHH
Q 012325 263 VNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKF 342 (466)
Q Consensus 263 v~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~ 342 (466)
++||+++|++||||+.++. ..++...|..++.+|..++.. +.+ -.++.++|
T Consensus 62 i~~l~~cq~~~GGF~~~~~---------------------~~~h~~~Ty~al~~L~ll~~~------~~i--d~~~~~~~ 112 (316)
T PLN03201 62 VSWVMRCQHESGGFGGNTG---------------------HDPHILYTLSAVQILALFDRL------DLL--DADKVASY 112 (316)
T ss_pred HHHHHHhcCCCCCcCCCCC---------------------CcccHHHHHHHHHHHHHhhhh------hhh--hHHHHHHH
Confidence 9999999999999986431 113456688888888887432 112 25679999
Q ss_pred HHHhcccCCCccc-cCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCC
Q 012325 343 IEKIQELDGSWYG-SWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDR 421 (466)
Q Consensus 343 L~~~Q~~DG~W~g-~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~ 421 (466)
|.+.|++||||.+ .++.+++..|.+|+.+|...+.. ....++++++||+++|+.||||+.. ++..
T Consensus 113 l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~--~~i~~~~~~~~i~scq~~dGGF~~~------------p~~e 178 (316)
T PLN03201 113 VAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRL--DKINVEKAVDYIVSCKNFDGGFGCT------------PGGE 178 (316)
T ss_pred HHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHHhcCCCCCcCCC------------CCCC
Confidence 9999999999987 57888888899998888888754 3456889999999999999999874 2456
Q ss_pred CchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccC
Q 012325 422 SHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLER 457 (466)
Q Consensus 422 s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~ 457 (466)
|+...|.+|+.+|.-.|..+.-..++.++||.++|.
T Consensus 179 sh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~ 214 (316)
T PLN03201 179 SHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQV 214 (316)
T ss_pred CccceehHHHHHHHHcCccccCCHHHHHHHHHHhCC
Confidence 778889999999998886543345778899999984
No 30
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.67 E-value=1.4e-14 Score=144.76 Aligned_cols=248 Identities=16% Similarity=0.110 Sum_probs=160.7
Q ss_pred hHHHhhhhccccCCCcHHHHHHHHhhhcceeeeCCC-ceeecCCCCCcchHHHHHHHHHhcCCchhh-HHHHHHHHHHHH
Q 012325 116 NKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDG-MKVQGYNGSQLWDTAFAVQAIISTNLVEEY-GATLKKAHKYIK 193 (466)
Q Consensus 116 ~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~G-~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~-~~~l~~a~~wL~ 193 (466)
+-+|+.|.+.+...+....++.+++|... +.++| ....+...+++.-|=.|+..|...|-.+.. .-..+++++||.
T Consensus 31 y~~l~~l~lL~~~~~~~~~~~~i~~i~~~--q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~ 108 (299)
T cd02893 31 YWILHSLELLGEELDQSYADDVISFLRRC--QNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLL 108 (299)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHHh--cCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHH
Confidence 33455555554433333456777777765 34555 433333357788888888888887743211 122456999999
Q ss_pred hccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchh----hHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhh
Q 012325 194 DSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDC----TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSL 269 (466)
Q Consensus 194 ~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~----Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~ 269 (466)
++|+.+ |||..... .++|. +|.++..|+. . ..++.++++++||+++
T Consensus 109 ~~q~~d---------------Ggf~~~~~----~e~D~r~tycava~~~lL~--~---------~~~~~~~~~~~~l~~c 158 (299)
T cd02893 109 SLKQPD---------------GSFRMHVG----GEVDVRGTYCAISVASLLN--I---------LTDELFEGVAEYILSC 158 (299)
T ss_pred HhcCCC---------------CCeeCCCC----CCchHhHHHHHHHHHHHhC--C---------CchhhHHHHHHHHHHc
Confidence 999976 66665521 23443 2333333322 1 1245688999999999
Q ss_pred ccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhccc
Q 012325 270 QNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL 349 (466)
Q Consensus 270 Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~ 349 (466)
|+.||||+.-. . ..+..-.|..++.+|..++.... .-+++.++||.+.|.+
T Consensus 159 Q~~dGGF~~~p-~--------------------~e~h~~yTfcavasL~llg~~~~--------~d~~~l~~wl~~~q~~ 209 (299)
T cd02893 159 QTYEGGFGGVP-G--------------------NEAHGGYTFCALAALAILGKPDK--------LDLESLLRWLVARQMR 209 (299)
T ss_pred CCCCCCcCCCC-C--------------------CCCCccHHHHHHHHHHHcCCccc--------cCHHHHHHHHHhhcCC
Confidence 99999997311 0 11334458888889998875321 2378899999999988
Q ss_pred -CCCccccCC-CcccchHHHHHHHHHHccCCC-----------CCcHHHHHHHHHHHh-ccCCCCCCCCccccccccccc
Q 012325 350 -DGSWYGSWG-VCFTYGTWFGVKGLVAAGMNY-----------SNSSSIRKACEFLLS-KQRPSGGWGESYLSCQKKVYS 415 (466)
Q Consensus 350 -DG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~-----------~~~~~i~ra~~~Ll~-~Q~~DGgWge~~~s~~~~~y~ 415 (466)
+|++.|+-+ ...++-|+|++.+|...+..+ ..-...++..+||+. .|+.+|||...
T Consensus 210 ~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~---------- 279 (299)
T cd02893 210 FEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDK---------- 279 (299)
T ss_pred CCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCC----------
Confidence 899987653 235556777777777665421 012345678899995 45778999753
Q ss_pred CCCCCCCchhHHHHHHHHHHH
Q 012325 416 NLEGDRSHVVNTAWAMLALID 436 (466)
Q Consensus 416 ~~~~~~s~~~~TA~ALlaL~~ 436 (466)
++..+++.+|+++|.+|..
T Consensus 280 --p~~~~D~yHT~~~l~~Lsl 298 (299)
T cd02893 280 --PGKPRDFYHTCYALSGLSI 298 (299)
T ss_pred --CCCCCCchhHHHHHHHHhc
Confidence 2556789999999999864
No 31
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.67 E-value=1.1e-14 Score=146.31 Aligned_cols=253 Identities=17% Similarity=0.175 Sum_probs=166.9
Q ss_pred HHHHHHhhhcceeeeCCCce-eecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCC
Q 012325 134 FKLHIPRINDYLWIAEDGMK-VQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHI 212 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~~G~~-~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~ 212 (466)
+.||++.+.+. ....|.+ .......-++.+-+++.+|.-.+..+. ...+++++||+++|+.+
T Consensus 10 ~~kh~~yl~~~--~~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~--~~~~~~i~~l~~cq~~~------------- 72 (316)
T PLN03201 10 VDKHVRYIKSL--EKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDD--VDRDEVVSWVMRCQHES------------- 72 (316)
T ss_pred HHHHHHHHHHh--CCCCCCccccccccchHHHHHHHHHHHHHhCCCcc--ccHHHHHHHHHHhcCCC-------------
Confidence 67899988775 2333322 111123345567556666655554332 33588999999999975
Q ss_pred CCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccC
Q 012325 213 SKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLN 292 (466)
Q Consensus 213 ~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~ 292 (466)
|||+-.. ...|+.-.|-.++.+|..+... ..-..++.++||.++|++||||..-.
T Consensus 73 --GGF~~~~--~~~~h~~~Ty~al~~L~ll~~~---------~~id~~~~~~~l~s~Q~~dGgF~~~~------------ 127 (316)
T PLN03201 73 --GGFGGNT--GHDPHILYTLSAVQILALFDRL---------DLLDADKVASYVAGLQNEDGSFSGDE------------ 127 (316)
T ss_pred --CCcCCCC--CCcccHHHHHHHHHHHHHhhhh---------hhhhHHHHHHHHHHhcCCCCCccCCC------------
Confidence 5554322 2336777788888887765321 12235679999999999999996310
Q ss_pred cccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccC-CCcccchHHHHHHH
Q 012325 293 PAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW-GVCFTYGTWFGVKG 371 (466)
Q Consensus 293 ~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~w-g~~~~Y~T~~al~a 371 (466)
.+. .| +..|-.++.+|..++... ...++++++||++.|++||+|.++- +....-.|++++.+
T Consensus 128 ----~ge--~D---~r~ty~a~a~l~LL~~~~--------~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaa 190 (316)
T PLN03201 128 ----WGE--ID---TRFSYCALCCLSLLKRLD--------KINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGA 190 (316)
T ss_pred ----CCC--cc---HHHHHHHHHHHHHhCccc--------hhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHH
Confidence 111 11 112555566666665321 1247899999999999999998753 33344458899999
Q ss_pred HHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 012325 372 LVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKV 451 (466)
Q Consensus 372 L~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~ 451 (466)
|...|..... ...+..+||+++|..+||+.... +...+..-|-|++-+|.-.+..+--..++..+|
T Consensus 191 L~llg~~~~~--d~~~l~~wL~~rQ~~~GGf~grp------------~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ 256 (316)
T PLN03201 191 LAITGSLHHV--DKDLLGWWLCERQVKSGGLNGRP------------EKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKF 256 (316)
T ss_pred HHHcCccccC--CHHHHHHHHHHhCCCCCCcCCCC------------CCCCchHHHHHHHHHHHHhccccccCHHHHHHH
Confidence 9988854111 24567899999999999987531 334667889999988888776543346888999
Q ss_pred HHhccCCc
Q 012325 452 TLSLEREF 459 (466)
Q Consensus 452 L~~~q~~~ 459 (466)
|++.|.+.
T Consensus 257 i~~~q~~~ 264 (316)
T PLN03201 257 ILDCQDDE 264 (316)
T ss_pred HHHHcCCC
Confidence 99998653
No 32
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.66 E-value=5.2e-17 Score=137.66 Aligned_cols=106 Identities=38% Similarity=0.442 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCccccccccccc
Q 012325 336 IKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYS 415 (466)
Q Consensus 336 i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~ 415 (466)
|+++++||++.|++||||.+.|+. ..+.|.+++.+|...+.. ...++|+||++||+++|++||||+...
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~~-~~~~t~~~~~al~~~~~~-~~~~ai~ka~~~l~~~Q~~dG~w~~~~--------- 69 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWGS-DVFVTAALILALAAAGDA-AVDEAIKKAIDWLLSHQNPDGGWGYSG--------- 69 (109)
T ss_dssp -----------------------------------------TS--SSBSSHHHHHHHHH---TTS--S-TS---------
T ss_pred Cccccccccccccccccccccccc-cccccccccccccccCCC-CcHHHHHHHHHHHHHhcCCCCCCCCcC---------
Confidence 678999999999999999988774 477899999999998876 688999999999999999999999741
Q ss_pred CCCCCCCchhHHHHHHHHHHHcCC-CCchhHHHHHHHHHhccC
Q 012325 416 NLEGDRSHVVNTAWAMLALIDAGQ-VRINCCCSTLKVTLSLER 457 (466)
Q Consensus 416 ~~~~~~s~~~~TA~ALlaL~~ag~-~~~~~i~rgv~~L~~~q~ 457 (466)
.+..+.|+.++.+|+.++. +..+.++|+++||++.|.
T Consensus 70 -----~~~~~~t~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 70 -----GEYVSMTAAAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp -------HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred -----CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 2224455555555554444 356679999999999864
No 33
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.64 E-value=2e-14 Score=144.08 Aligned_cols=267 Identities=15% Similarity=0.120 Sum_probs=169.9
Q ss_pred HHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCchh-hHHHHHHHHHHHHhccccCC-CCCCcccccCCC
Q 012325 135 KLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEE-YGATLKKAHKYIKDSQVLED-CPGNLDFWYRHI 212 (466)
Q Consensus 135 ~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~~~-~~~~l~~a~~wL~~~Q~~~~-~~Gdw~~~~~~~ 212 (466)
+||++.+.+.+-.-+.. .+....+.+|-|=+++.+|.-.|.... .+..-++.++||.++|+.++ +.|++
T Consensus 2 ~~H~~y~~~~l~~lp~~--~~~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF------- 72 (307)
T cd02895 2 KKHVKFFQRCLQLLPSS--YQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGF------- 72 (307)
T ss_pred hHHHHHHHHHhhhCCch--hhhhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCC-------
Confidence 46677666553222222 333445778888899988887764320 12335778999999993211 11443
Q ss_pred CCCCCCCccC--------CCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccc
Q 012325 213 SKGAWPFSTA--------DHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRS 284 (466)
Q Consensus 213 ~~GGW~f~~~--------~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~ 284 (466)
+-+.. ..+.+++-.|=.|+.+|..++. +......++.++||.++|++||||+....
T Consensus 73 -----~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~--------~~~~idr~~i~~~l~~~q~~dGgF~~~~~--- 136 (307)
T cd02895 73 -----RGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGD--------DLSRVDRKAILNFLSKLQLPDGSFGSVLD--- 136 (307)
T ss_pred -----CCCCCCccccccccCCcccHHHHHHHHHHHHHhCC--------chhhhhHHHHHHHHHHhCCCCCCccCCcC---
Confidence 32211 1123555567777777766642 11122346788999999999999974320
Q ss_pred cccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccC-CCcccc
Q 012325 285 YPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW-GVCFTY 363 (466)
Q Consensus 285 ~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~w-g~~~~Y 363 (466)
..++ .+..-.|-.++.+|..++...+ +. .-.++.++||.+.|+.||+|.+.- +....=
T Consensus 137 ----------~~~~-----e~d~r~ty~Av~~l~lL~~~~~----~~--~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g 195 (307)
T cd02895 137 ----------SEGG-----ENDMRFCYCAVAICYMLDDWSE----ED--IDKEKLIDYIKSSQSYDGGFGQGPGLESHGG 195 (307)
T ss_pred ----------CcCC-----CccHHHHHHHHHHHHHhCCCcc----cc--ccHHHHHHHHHHccCCCCCccCCCCCCcccc
Confidence 0011 1123345556666666654321 01 236889999999999999997542 222333
Q ss_pred hHHHHHHHHHHccCCCC-CcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCc
Q 012325 364 GTWFGVKGLVAAGMNYS-NSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRI 442 (466)
Q Consensus 364 ~T~~al~aL~~~g~~~~-~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~ 442 (466)
.|.+|+.+|...|.... ....+++.++||+++|+.+||++.. ++..+++-.|-|++-+|.-.+..+.
T Consensus 196 ~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr------------~~k~~D~cysfw~~a~L~iL~~~~~ 263 (307)
T cd02895 196 STFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR------------PNKPADTCYSFWVGASLKLLDAFQL 263 (307)
T ss_pred HHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC------------CCCCCccchhhHHHHHHHHcCcccc
Confidence 48889999988876410 2456788999999999999999754 1345667889999988888776544
Q ss_pred hhHHHHHHHHHhccCCc
Q 012325 443 NCCCSTLKVTLSLEREF 459 (466)
Q Consensus 443 ~~i~rgv~~L~~~q~~~ 459 (466)
-.+++..+||++.|..+
T Consensus 264 id~~~l~~~l~~~q~~~ 280 (307)
T cd02895 264 IDFEKNRNYLLSTQQSL 280 (307)
T ss_pred cCHHHHHHHHHHHcCCC
Confidence 45889999999877543
No 34
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.63 E-value=5.9e-14 Score=140.63 Aligned_cols=257 Identities=17% Similarity=0.088 Sum_probs=163.0
Q ss_pred hHHHhhhhccccCC--CcHHHHHHHHhhhccee--eeCCC-ceeecC----------CCCCcchHHHHHHHHHhcCCchh
Q 012325 116 NKVLNMLCCWVEDP--NSEAFKLHIPRINDYLW--IAEDG-MKVQGY----------NGSQLWDTAFAVQAIISTNLVEE 180 (466)
Q Consensus 116 ~~~l~~l~~~~~~p--~~~~~~~~~~~l~~~~~--~~~~G-~~~q~~----------~~s~vwDTa~a~~AL~~ag~~~~ 180 (466)
..+|+.|.+.+.+. ....-++.+++|..... ..++| +..... ..++++-|=+|+.+|.-.|-..+
T Consensus 31 yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~ 110 (307)
T cd02895 31 FFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLS 110 (307)
T ss_pred HHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchh
Confidence 34566666655332 22223566677766531 03454 322111 24778888888888876653221
Q ss_pred hHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccC-CCCCCCchhhHHHHHHhHhhhcccccccCCccchHHH
Q 012325 181 YGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTA-DHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRL 259 (466)
Q Consensus 181 ~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~-~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i 259 (466)
.-..++.++||.++|..+ |||+-... ..+-+|+--|=.|+.++..+....+ .....
T Consensus 111 -~idr~~i~~~l~~~q~~d---------------GgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~-------~~~d~ 167 (307)
T cd02895 111 -RVDRKAILNFLSKLQLPD---------------GSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE-------EDIDK 167 (307)
T ss_pred -hhhHHHHHHHHHHhCCCC---------------CCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc-------ccccH
Confidence 123578899999999876 44443220 1122344445555555544432110 12246
Q ss_pred HHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHH
Q 012325 260 YDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRA 339 (466)
Q Consensus 260 ~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra 339 (466)
++.++||+++|+.||||+... .+ .+..-.|..++.+|..++.... . . ...+++.
T Consensus 168 ~~li~~l~s~Q~~dGGF~~~~----------------~~-----Esh~g~Tyca~asL~lL~~~~~-~--~--~~~~~~l 221 (307)
T cd02895 168 EKLIDYIKSSQSYDGGFGQGP----------------GL-----ESHGGSTFCAIASLSLLGKLEE-L--S--EKFLERL 221 (307)
T ss_pred HHHHHHHHHccCCCCCccCCC----------------CC-----CccccHHHHHHHHHHHcCCccc-c--c--cccHHHH
Confidence 789999999999999997321 11 1223357778888888765320 0 0 1347889
Q ss_pred HHHHHHhcccCCCccccCC-CcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccC-CCCCCCCcccccccccccCC
Q 012325 340 VKFIEKIQELDGSWYGSWG-VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQR-PSGGWGESYLSCQKKVYSNL 417 (466)
Q Consensus 340 ~~~L~~~Q~~DG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~-~DGgWge~~~s~~~~~y~~~ 417 (466)
++||.+.|..+|||.++-+ ...++-|+|++.+|...|.. ..-.+++..+||+++|+ .+||+...
T Consensus 222 ~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~--~~id~~~l~~~l~~~q~~~~GGf~~~------------ 287 (307)
T cd02895 222 KRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAF--QLIDFEKNRNYLLSTQQSLVGGFAKN------------ 287 (307)
T ss_pred HHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcc--cccCHHHHHHHHHHHcCCCCCCcCCC------------
Confidence 9999999999999988643 34667788999999888764 33456789999999885 58999753
Q ss_pred CCCCCchhHHHHHHHHHH
Q 012325 418 EGDRSHVVNTAWAMLALI 435 (466)
Q Consensus 418 ~~~~s~~~~TA~ALlaL~ 435 (466)
++..+++.+|.|+|.+|.
T Consensus 288 p~~~~D~~ht~~~la~Ls 305 (307)
T cd02895 288 PDSHPDPLHSYLGLAALS 305 (307)
T ss_pred CCCCCChhHHHHHHHHHH
Confidence 256788999999999986
No 35
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.60 E-value=1.6e-15 Score=129.06 Aligned_cols=110 Identities=24% Similarity=0.261 Sum_probs=80.9
Q ss_pred HHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHH--HHHHH
Q 012325 189 HKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYD--SVNVI 266 (466)
Q Consensus 189 ~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~--av~~L 266 (466)
++||+++|+.| |||++. ...|++.+|+.++.+|..+...+ + .++ |++||
T Consensus 1 v~~L~~~Q~~d---------------Ggw~~~---~~~~~~~~T~~al~aL~~~g~~~--------~---~~~~~~~~~L 51 (113)
T PF13249_consen 1 VDWLLSRQNPD---------------GGWGGF---GGPSDVWDTAFALLALAALGEEP--------D---RDRAAAVEWL 51 (113)
T ss_dssp HHHHHHHB-TT---------------SSBBSS---TS-BEHHHHHHHHHHHHHHTSHH--------C---HHHHHHHHHH
T ss_pred CHhhHHHcCCC---------------CCCcCC---CCCCCHHHHHHHHHHHHHhCCcc--------c---HHHHHHHHHH
Confidence 68999999987 888876 45688999999999998875321 1 344 59999
Q ss_pred HhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHh
Q 012325 267 FSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKI 346 (466)
Q Consensus 267 l~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~ 346 (466)
+++|++||||..++.. .++.++.|..++.+|..++.... .+.++|+++||++.
T Consensus 52 ~~~q~~dGg~~~~~~~--------------------~~~~~~~t~~~l~~l~~~~~~~~-------~~~~~~a~~~l~~~ 104 (113)
T PF13249_consen 52 LSQQNPDGGWGSNPDG--------------------GPPDVYTTYVALAALELLGRPDD-------EEAVRKAVDWLLSC 104 (113)
T ss_dssp HHHB-TTSGBBSSTTT--------------------T-BSHHHHHHHHHHHHHHT-GGC-------HTTHCCHHHHHHHT
T ss_pred HHhCCCCCCccCCCCC--------------------CCccHHHHHHHHHHHHHcCCCcc-------cHHHHHHHHHHHHh
Confidence 9999999999754311 22346678889999988875421 35799999999999
Q ss_pred cccCCCcc
Q 012325 347 QELDGSWY 354 (466)
Q Consensus 347 Q~~DG~W~ 354 (466)
|++||+|.
T Consensus 105 Q~~dGg~~ 112 (113)
T PF13249_consen 105 QNPDGGWG 112 (113)
T ss_dssp B-TTSSB-
T ss_pred cCCCCCCC
Confidence 99999995
No 36
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.59 E-value=2.5e-13 Score=135.62 Aligned_cols=254 Identities=15% Similarity=0.160 Sum_probs=164.7
Q ss_pred HHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCC
Q 012325 135 KLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISK 214 (466)
Q Consensus 135 ~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~ 214 (466)
.+|++.+.+.+-.. ...++....+.+|=+-+++.+|.-.|...+ ....++.++||.++|..+
T Consensus 2 ~~h~~~~~~~l~~~--p~~~~~~d~~~~~~~y~~l~~l~lL~~~~~-~~~~~~~i~~i~~~q~~~--------------- 63 (299)
T cd02893 2 EKHIKYLKKSLRQL--PSSFTSLDASRPWLLYWILHSLELLGEELD-QSYADDVISFLRRCQNPS--------------- 63 (299)
T ss_pred hHHHHHHHHHhhcC--CccccccccccHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhcCCC---------------
Confidence 46777777664322 223344457889999999999888775221 345788999999999865
Q ss_pred CCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcc
Q 012325 215 GAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPA 294 (466)
Q Consensus 215 GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~ 294 (466)
||++-. ...++++-.|=.|+.+|..+...+ ....-..++.++||.++|++||||..-+
T Consensus 64 GgF~~~--~~~~~h~~~Ty~A~~~L~ll~~~~------~~~~id~~~~~~~l~~~q~~dGgf~~~~-------------- 121 (299)
T cd02893 64 GGFGGG--PGQLPHLATTYAAVNALAIIGTEE------AYDVIDREALYKFLLSLKQPDGSFRMHV-------------- 121 (299)
T ss_pred CCCCCC--CCCCccHHHHHHHHHHHHHhCCch------hhhHhhHHHHHHHHHHhcCCCCCeeCCC--------------
Confidence 444433 234567777888888777664210 0112223568999999999999997421
Q ss_pred cccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCC-CcccchHHHHHHHHH
Q 012325 295 ETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG-VCFTYGTWFGVKGLV 373 (466)
Q Consensus 295 e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg-~~~~Y~T~~al~aL~ 373 (466)
.+. .| .-.|-.++..+..++.. + ...++++++||++.|+.||+|.++-+ ....=.|++++.+|.
T Consensus 122 --~~e--~D---~r~tycava~~~lL~~~-~-------~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~ 186 (299)
T cd02893 122 --GGE--VD---VRGTYCAISVASLLNIL-T-------DELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALA 186 (299)
T ss_pred --CCC--ch---HhHHHHHHHHHHHhCCC-c-------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHH
Confidence 111 11 11222333333334322 1 24588999999999999999976533 222223788999999
Q ss_pred HccCCCCCcHHHHHHHHHHHhccCC-CCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCC------------
Q 012325 374 AAGMNYSNSSSIRKACEFLLSKQRP-SGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQV------------ 440 (466)
Q Consensus 374 ~~g~~~~~~~~i~ra~~~Ll~~Q~~-DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~------------ 440 (466)
..|.. +...+++.++||+++|.+ +||+.... +..+++-.|-|.+-+|...+..
T Consensus 187 llg~~--~~~d~~~l~~wl~~~q~~~~GGf~grp------------~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~ 252 (299)
T cd02893 187 ILGKP--DKLDLESLLRWLVARQMRFEGGFQGRT------------NKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAE 252 (299)
T ss_pred HcCCc--cccCHHHHHHHHHhhcCCCCCCcCCCC------------CCCCccHHHHHHHHHHHHHHHHhccccccccccc
Confidence 88864 344678999999999988 89986531 3345667788888777665532
Q ss_pred -CchhHHHHHHHHHhccC
Q 012325 441 -RINCCCSTLKVTLSLER 457 (466)
Q Consensus 441 -~~~~i~rgv~~L~~~q~ 457 (466)
.--..++-.+||+..|.
T Consensus 253 ~~~~~~~~l~~~il~~~q 270 (299)
T cd02893 253 GTLFDQEALQEYILLCCQ 270 (299)
T ss_pred ccccCHHHHHHHHHHhcC
Confidence 11236788889985543
No 37
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.56 E-value=7.6e-14 Score=135.72 Aligned_cols=206 Identities=18% Similarity=0.173 Sum_probs=141.4
Q ss_pred CCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcc
Q 012325 215 GAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPA 294 (466)
Q Consensus 215 GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~ 294 (466)
|+|..+ ..+.-+++..||.|++.|..+.+. ..++.+.|.++++||++.|++||+|..-.+
T Consensus 14 Gsfs~f-~~~~~~s~WLTAfv~k~f~~a~~~------i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~------------- 73 (246)
T PF07678_consen 14 GSFSAF-SSDSPSSTWLTAFVVKVFSQAKKY------IFVDENVICRAVKWLISQQQPDGSFEEDGP------------- 73 (246)
T ss_dssp SSBBSS-TTTSSBBHHHHHHHHHHHHHHTTT------S-CEHHHHHHHHHHHHHHBETTSEB--SSS-------------
T ss_pred CCeecc-ccCCcccHHHHHHHHHHHHHHHHh------hcCCHHHHHHHHHHHHHhhcCCCccccCCC-------------
Confidence 777666 344557889999999999877542 356789999999999999999999964211
Q ss_pred cccCCcccc--CCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHH
Q 012325 295 ETFGDIVID--YPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGL 372 (466)
Q Consensus 295 e~fg~~~~d--~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL 372 (466)
++.+.|-. ...+..||.|+.||...+...+.. ...+...++||++||+++. + .....|..+.+..||
T Consensus 74 -~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~-~~~~~~~i~kA~~~L~~~~-~--------~~~~~Y~lAl~aYAL 142 (246)
T PF07678_consen 74 -VIHREMQGGVEDDIALTAYVLIALLEAGSLCDSE-KPEYENAINKALNYLERHL-D--------NIQDPYTLALVAYAL 142 (246)
T ss_dssp --SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTT-HHCHHHHHHHHHHHHHHHH-G--------CTSSHHHHHHHHHHH
T ss_pred -ccccccCCCCCCCeeehHHHHHHHHhhhhhcccc-chhhHHHHHHHHHHHHHhc-c--------ccCCHHHHHHHHHHH
Confidence 12222211 123668999999999987321111 3455789999999998872 1 134688998888899
Q ss_pred HHccCCCCCcHHHHHHHHHHHhccCCCCC---CCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHH
Q 012325 373 VAAGMNYSNSSSIRKACEFLLSKQRPSGG---WGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTL 449 (466)
Q Consensus 373 ~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGg---Wge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv 449 (466)
..+|. ++...++.+-|.+....+|+ |...........+.. .+...++..||||||+++.. .+.+...+.+
T Consensus 143 ~la~~----~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~-~~~s~~vEtTaYaLLa~l~~--~~~~~~~~iv 215 (246)
T PF07678_consen 143 ALAGD----SPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWS-RGSSLDVETTAYALLALLKR--GDLEEASPIV 215 (246)
T ss_dssp HHTTT----CHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT--SHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred Hhhcc----cchHHHHHHHHHHhhhhccccCcccCCccccccccccc-ccchHHHHHHHHHHHHHHhc--ccHHHHHHHH
Confidence 98872 46778888999888777765 654422111101000 01124567899999999998 4467899999
Q ss_pred HHHHhccCC
Q 012325 450 KVTLSLERE 458 (466)
Q Consensus 450 ~~L~~~q~~ 458 (466)
+||.++++.
T Consensus 216 ~WL~~qr~~ 224 (246)
T PF07678_consen 216 RWLISQRNS 224 (246)
T ss_dssp HHHHHCTTT
T ss_pred HHHHHhcCC
Confidence 999999864
No 38
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.54 E-value=1e-13 Score=135.26 Aligned_cols=158 Identities=8% Similarity=0.098 Sum_probs=113.5
Q ss_pred CchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCC
Q 012325 228 ISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCV 307 (466)
Q Consensus 228 d~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~ 307 (466)
|-+.|...++-|+.+.+. .+.+...+++.||++||+++|++||||+.|.+.++ .++++|+ |.|
T Consensus 42 DN~aT~~e~~fLa~~y~~----t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~-~Y~~~IT----fND-------- 104 (290)
T TIGR02474 42 DNGATVTEIRYLAQVYQQ----EKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG-GYSDAIT----YND-------- 104 (290)
T ss_pred cCccHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC-Ccccccc----cCc--------
Confidence 445677888877776442 23456789999999999999999999999987765 6777775 544
Q ss_pred CcHHHHHHHHHhhhhhCC------CCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccc------------------
Q 012325 308 ECTSASIQALTSFKKLYP------GHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTY------------------ 363 (466)
Q Consensus 308 ~~Ta~vl~aL~~~~~~~~------~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y------------------ 363 (466)
+.+.+||++|..+....+ ....+++..+++||++||++.|.++|+|.+.|+.+|--
T Consensus 105 ~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~ 184 (290)
T TIGR02474 105 NAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSS 184 (290)
T ss_pred HHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCccccc
Confidence 245588999976643211 11236778999999999999999999999999987632
Q ss_pred -hHHHHHHHHHHccCC-CCCcHHHHHHHHHHHhccCCCCCC
Q 012325 364 -GTWFGVKGLVAAGMN-YSNSSSIRKACEFLLSKQRPSGGW 402 (466)
Q Consensus 364 -~T~~al~aL~~~g~~-~~~~~~i~ra~~~Ll~~Q~~DGgW 402 (466)
.|+-++.-|...-.+ .....+|..|++||.+..-++=-|
T Consensus 185 ~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~g~~~ 225 (290)
T TIGR02474 185 SESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIRGYAY 225 (290)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCCCcee
Confidence 145556666654322 122356778999999987665333
No 39
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.53 E-value=2.5e-14 Score=148.95 Aligned_cols=211 Identities=20% Similarity=0.266 Sum_probs=160.3
Q ss_pred ceeecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCC------ccCCCC
Q 012325 152 MKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPF------STADHG 225 (466)
Q Consensus 152 ~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f------~~~~~~ 225 (466)
.+...+..++..||+-++.++....-. +.+.++++|+..+|+.. |+|..+ +...-++|-= -.....
T Consensus 254 f~~~~~~ypd~d~T~~~~~al~~~~~~----~~~~~~l~~V~~~q~~~---g~~a~~-e~~~~~a~~~~L~~~~~~~~~~ 325 (517)
T COG1657 254 FSNINTGYPDADDTAGVVRALIGVQSL----PNFELGLDWVLYMQNKL---GGLAVY-EDRNLHAWLRLLPPAEVKAMVD 325 (517)
T ss_pred eeecccCCCCchhhhHHHHHHHhhcch----hhHHhhhhHhhhccccc---Cceeee-ccccccHHHhhCCHhhcccccc
Confidence 444455578899999999999987632 44677999999999984 677653 3333344410 001224
Q ss_pred CCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCC
Q 012325 226 WPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYP 305 (466)
Q Consensus 226 ~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~ 305 (466)
++.+|||+.++.+|..+..-.+ +. +...+++|++||++.|+++|.| ||.|.+++
T Consensus 326 ~s~adct~~~~~~l~a~~~yl~---~~--~~~~i~~a~e~LL~~Q~~~GsW--------------------~g~w~v~~- 379 (517)
T COG1657 326 PSTADCTHRVVLALAALNAYLE---AY--DGQPIERALEWLLSDQEPDGSW--------------------YGRWGVCY- 379 (517)
T ss_pred CCcccCCCccHHHHhhhhhccc---cc--cCCcccHHHhhhhhhccccCce--------------------eeEEEEEE-
Confidence 4678999999999887643111 00 1456999999999999999999 78888887
Q ss_pred CCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCc---cc--------chHHHHHHHHHH
Q 012325 306 CVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC---FT--------YGTWFGVKGLVA 374 (466)
Q Consensus 306 ~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~---~~--------Y~T~~al~aL~~ 374 (466)
++.|+.++.+|...+..+ ++...+++++.||...|.+||+|++.+..+ +. -.|.+++.++..
T Consensus 380 -iY~~s~a~~~l~~~g~~~------~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~ 452 (517)
T COG1657 380 -IYGTSGALSALALVGETD------ENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLT 452 (517)
T ss_pred -EEehhhhhhhhhccCccc------cchHHHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHH
Confidence 889999999999988642 235789999999999999999999866422 11 137899999999
Q ss_pred ccCCCCCcHHHHHHHHHHHhccCCCCCCCCc
Q 012325 375 AGMNYSNSSSIRKACEFLLSKQRPSGGWGES 405 (466)
Q Consensus 375 ~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~ 405 (466)
+..+ +.+.+++++++|.+.|.++|.|++.
T Consensus 453 a~~~--~~~~i~~~~~~~~~~~~~~g~~~~~ 481 (517)
T COG1657 453 ALEP--NQEAIKPGINLLVSDQEPDGSWREA 481 (517)
T ss_pred hccc--chhhhcccccccccCcCCCCccccc
Confidence 8876 6777999999999999999999875
No 40
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.52 E-value=2.5e-12 Score=126.97 Aligned_cols=216 Identities=19% Similarity=0.127 Sum_probs=149.1
Q ss_pred hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHH
Q 012325 180 EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRL 259 (466)
Q Consensus 180 ~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i 259 (466)
+....|++++++|.+.|+.| |||++...+. .+++..|+.++++|..+... + .++++.+
T Consensus 46 ~~~~~i~~~~~~l~~~Q~~d---------------Ggf~~w~~~~-~~~~~~Ta~~~~~L~~a~~~-----~-~v~~~~i 103 (282)
T cd02891 46 KALEYIRKGYQRLLTYQRSD---------------GSFSAWGNSD-SGSTWLTAYVVKFLSQARKY-----I-DVDENVL 103 (282)
T ss_pred HHHHHHHHHHHHHHhhcCCC---------------CCccccCCCC-CCchHHHHHHHHHHHHHHHc-----C-CCCHHHH
Confidence 46788999999999999976 7777665432 57889999999999887542 2 3567899
Q ss_pred HHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHH
Q 012325 260 YDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRA 339 (466)
Q Consensus 260 ~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra 339 (466)
.++++||.+.|++||+|..+........ ++ .+.+..+.|+.++.+|...+... ...+.++
T Consensus 104 ~ra~~~L~~~q~~~g~~~~~~~~~~~~~---------~~---~~~~~~~~tA~al~~L~~~g~~~--------~~~~~~a 163 (282)
T cd02891 104 ARALGWLVPQQKEDGSFRELGPVIHREM---------KG---GVDDSVSLTAYVLIALAEAGKAC--------DASIEKA 163 (282)
T ss_pred HHHHHHHHhccCCCCCcCCCCCccCHhh---------cC---CcCCCcchHHHHHHHHHHhcccc--------hHHHHHH
Confidence 9999999999999999976443211100 01 12344678999999999887531 2589999
Q ss_pred HHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCC
Q 012325 340 VKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEG 419 (466)
Q Consensus 340 ~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~ 419 (466)
++||.++... ....|+.+....+|...|.. +...+.++-|.......+++... ....+.. -+
T Consensus 164 ~~~L~~~~~~---------~~~~~~~a~la~al~~~g~~----~~~~~~l~~l~~~~~~~~~~~~~----~~~~~~~-~~ 225 (282)
T cd02891 164 LAYLETQLDG---------LLDPYALAILAYALALAGDS----TRADEALKKLLEAAREKGGTAHW----SLSWPGD-YG 225 (282)
T ss_pred HHHHHHhccc---------CCChHHHHHHHHHHHHcCcc----HHHHHHHHHHHHHhhhcCCcccc----cCCCCCC-CC
Confidence 9999987753 23578888888888887753 44556666666655444443211 0001110 12
Q ss_pred CCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccC
Q 012325 420 DRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLER 457 (466)
Q Consensus 420 ~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~ 457 (466)
....+..|+++|++.+..+ +.+...+.++||.++++
T Consensus 226 s~~~~~a~a~all~~~~~~--~~~~~~~~~~~L~~~~~ 261 (282)
T cd02891 226 SSLRVEATAYALLALLKLG--DLEEAGPIAKWLAQQRN 261 (282)
T ss_pred chhhHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcCC
Confidence 2345577899999998755 34568899999998554
No 41
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.48 E-value=1.3e-14 Score=122.83 Aligned_cols=107 Identities=30% Similarity=0.442 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHH
Q 012325 259 LYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKR 338 (466)
Q Consensus 259 i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~r 338 (466)
|+++++||++.|++||||. |. ++ ++...|+.++.+|...+.. . +.++|+|
T Consensus 1 i~~~~~~l~~~Q~~dG~W~-~~----------------~~------~~~~~t~~~~~al~~~~~~--~-----~~~ai~k 50 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWG-YN----------------WG------SDVFVTAALILALAAAGDA--A-----VDEAIKK 50 (109)
T ss_dssp ---------------------------------------------------------------TS--------SSBSSHH
T ss_pred Ccccccccccccccccccc-cc----------------cc------ccccccccccccccccCCC--C-----cHHHHHH
Confidence 5789999999999999995 21 01 2356788888888888642 2 2478999
Q ss_pred HHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccC
Q 012325 339 AVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQR 397 (466)
Q Consensus 339 a~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~ 397 (466)
|++||+++|++||+|... +..+.+.|..++.+|...+.. ..++.++|+++||+++|.
T Consensus 51 a~~~l~~~Q~~dG~w~~~-~~~~~~~t~~~~~~l~~~~~~-~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 51 AIDWLLSHQNPDGGWGYS-GGEYVSMTAAAIAALALAGVY-PDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHH---TTS--S-T-S--HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCCCCCCCCc-CCCCHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccC
Confidence 999999999999999864 555666777778788777765 578999999999999975
No 42
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.40 E-value=1.9e-11 Score=126.43 Aligned_cols=215 Identities=13% Similarity=0.177 Sum_probs=139.1
Q ss_pred HHHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCC
Q 012325 134 FKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~ 213 (466)
..+|++.+.+.+- .-+..++....+.+|=+=+++.+|.-.|..-+ +..-++.++||.++|..+
T Consensus 46 ~~~H~~yl~~~l~--~lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~-~~~~~~ii~~l~~cQ~~d-------------- 108 (439)
T PLN02710 46 REKHLEYLTRGLR--QLGPSFSVLDANRPWLCYWILHSIALLGESLD-DELENDTIDFLSRCQDPN-------------- 108 (439)
T ss_pred HHHHHHHHHHHhh--cCChhhhhhhhhhHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhcCCC--------------
Confidence 5678887766543 22333334446788999999988887765211 234577899999999875
Q ss_pred CCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCc
Q 012325 214 KGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNP 293 (466)
Q Consensus 214 ~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~ 293 (466)
||++-.. ...|+.-.|=.|+.+|..++..+ ....-...+.++||+++|++||||+...
T Consensus 109 -GGFgg~p--g~~~hl~~TY~Av~~L~iLg~~~------~l~~Idr~~l~~fl~s~q~~dGgF~~~~------------- 166 (439)
T PLN02710 109 -GGYGGGP--GQLPHLATTYAAVNTLVTIGGER------ALSSINREKLYTFLLRMKDPSGGFRMHD------------- 166 (439)
T ss_pred -cCCCCCC--CCCccHHHHHHHHHHHHHcCCch------hhcccCHHHHHHHHHHcCCCCCCcccCC-------------
Confidence 4433221 23356666777777777664311 0111124567899999999999997421
Q ss_pred ccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCC-CcccchHHHHHHHH
Q 012325 294 AETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG-VCFTYGTWFGVKGL 372 (466)
Q Consensus 294 ~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg-~~~~Y~T~~al~aL 372 (466)
.+. .|..+.+ .++..+..++...+ .-+++.++||.+.|..||||.++-+ ....--|++++.+|
T Consensus 167 ---~gE--~D~R~tY---cAlail~LL~~l~~--------~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL 230 (439)
T PLN02710 167 ---GGE--MDVRACY---TAISVASLLNILDD--------ELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAM 230 (439)
T ss_pred ---CCC--CCcCCcH---HHHHHHHHhCcCch--------hhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHH
Confidence 111 1222233 33333444443211 3578999999999999999987533 23333488899999
Q ss_pred HHccCCCCCcHHHHHHHHHHHhccCCCCCCCCc
Q 012325 373 VAAGMNYSNSSSIRKACEFLLSKQRPSGGWGES 405 (466)
Q Consensus 373 ~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~ 405 (466)
...|.. +.-.+.+.++||+++|+.+||++..
T Consensus 231 ~LLg~l--~~id~~~l~~WL~~rQ~~~GGF~GR 261 (439)
T PLN02710 231 ILINEV--DRLDLPSLINWVVFRQGVEGGFQGR 261 (439)
T ss_pred HHcCCc--cccCHHHHHHHHHHhcCcCCCcCCC
Confidence 888764 3335778999999999999999764
No 43
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.37 E-value=1.4e-11 Score=127.55 Aligned_cols=181 Identities=15% Similarity=0.162 Sum_probs=130.5
Q ss_pred chhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCC
Q 012325 229 SDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVE 308 (466)
Q Consensus 229 ~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~ 308 (466)
+..|=.+|.+|..++. .++.+..++.++||.++|++||||+... .+.+..-
T Consensus 72 ~~~~Yw~L~sL~lLg~--------~l~~~~~~~ii~~l~~cQ~~dGGFgg~p---------------------g~~~hl~ 122 (439)
T PLN02710 72 PWLCYWILHSIALLGE--------SLDDELENDTIDFLSRCQDPNGGYGGGP---------------------GQLPHLA 122 (439)
T ss_pred HHHHHHHHHHHHHhCC--------cccHHHHHHHHHHHHHhcCCCcCCCCCC---------------------CCCccHH
Confidence 3556666667666542 2344556788999999999999997421 1224455
Q ss_pred cHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCcccc-CCCcccchHHHHHHHHHHccCCCCCcHHHHH
Q 012325 309 CTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGS-WGVCFTYGTWFGVKGLVAAGMNYSNSSSIRK 387 (466)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~-wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~r 387 (466)
.|-.++.+|..++.. ... ..| -.++.++||++.|++||||.+. +|...+-.|..|+..+...+.. ....+++
T Consensus 123 ~TY~Av~~L~iLg~~-~~l--~~I--dr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l--~~~~~e~ 195 (439)
T PLN02710 123 TTYAAVNTLVTIGGE-RAL--SSI--NREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNIL--DDELVKG 195 (439)
T ss_pred HHHHHHHHHHHcCCc-hhh--ccc--CHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcC--chhhHHH
Confidence 677888888888742 011 112 2467899999999999999764 3444444566666666666653 4456889
Q ss_pred HHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccC
Q 012325 388 ACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLER 457 (466)
Q Consensus 388 a~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~ 457 (466)
.++||+++|+.|||++.. ++..++...|-||+.+|.-.+..+.-.+++.++||.++|.
T Consensus 196 ~~~~I~scQ~~dGGF~g~------------P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~ 253 (439)
T PLN02710 196 VGDYILSCQTYEGGIGGE------------PGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQG 253 (439)
T ss_pred HHHHHHHhCCCCCCCCCC------------CCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcC
Confidence 999999999999999864 2556788899999999988887665568999999999995
No 44
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.33 E-value=1.6e-10 Score=114.12 Aligned_cols=222 Identities=16% Similarity=0.141 Sum_probs=138.4
Q ss_pred HHHHHHHHhhhcceeeeCCCce--eecCCCCCcchHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHhccccCCCCCCcccc
Q 012325 132 EAFKLHIPRINDYLWIAEDGMK--VQGYNGSQLWDTAFAVQAIISTNLV-EEYGATLKKAHKYIKDSQVLEDCPGNLDFW 208 (466)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~G~~--~q~~~~s~vwDTa~a~~AL~~ag~~-~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~ 208 (466)
..+++++++|..+ +.+||.+ ..+.+.+++|.|++++++|.+++.. ....+.+.||++||++.|..+ |+|...
T Consensus 49 ~~i~~~~~~l~~~--Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~---g~~~~~ 123 (282)
T cd02891 49 EYIRKGYQRLLTY--QRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKED---GSFREL 123 (282)
T ss_pred HHHHHHHHHHHhh--cCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCC---CCcCCC
Confidence 3477888888877 4566632 2223378999999999999976321 111578999999999999876 555443
Q ss_pred cCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccc
Q 012325 209 YRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWL 288 (466)
Q Consensus 209 ~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l 288 (466)
.+....+. .++..++++.||.++.+|...+. . ....+.++++||.+.++. .
T Consensus 124 ~~~~~~~~-----~~~~~~~~~~tA~al~~L~~~g~--------~-~~~~~~~a~~~L~~~~~~---~------------ 174 (282)
T cd02891 124 GPVIHREM-----KGGVDDSVSLTAYVLIALAEAGK--------A-CDASIEKALAYLETQLDG---L------------ 174 (282)
T ss_pred CCccCHhh-----cCCcCCCcchHHHHHHHHHHhcc--------c-chHHHHHHHHHHHHhccc---C------------
Confidence 33222221 12345678899999999876542 1 256899999999986543 1
Q ss_pred cccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCC-------ccccCCC-c
Q 012325 289 EVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGS-------WYGSWGV-C 360 (466)
Q Consensus 289 ~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~-------W~g~wg~-~ 360 (466)
.++...+.+..+|...+.. +...+.++-|...-...+. |...++. .
T Consensus 175 ----------------~~~~~~a~la~al~~~g~~----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 228 (282)
T cd02891 175 ----------------LDPYALAILAYALALAGDS----------TRADEALKKLLEAAREKGGTAHWSLSWPGDYGSSL 228 (282)
T ss_pred ----------------CChHHHHHHHHHHHHcCcc----------HHHHHHHHHHHHHhhhcCCcccccCCCCCCCCchh
Confidence 0133445555666666531 2344555555544333332 2211111 1
Q ss_pred ccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHH
Q 012325 361 FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID 436 (466)
Q Consensus 361 ~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ 436 (466)
....|++++.+....+ +.....+.++||.+.++..|+|..+ -.|++||+||..
T Consensus 229 ~~~a~a~all~~~~~~----~~~~~~~~~~~L~~~~~~~~~~~sT-------------------q~t~~al~AL~~ 281 (282)
T cd02891 229 RVEATAYALLALLKLG----DLEEAGPIAKWLAQQRNSGGGFLST-------------------QDTVVALQALAA 281 (282)
T ss_pred hHHHHHHHHHHHHhcC----ChhhHHHHHHHHHHcCCCCCCcccH-------------------HHHHHHHHHHHh
Confidence 2234566665555432 3356778999999988888888652 379999999964
No 45
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.8e-11 Score=113.29 Aligned_cols=155 Identities=25% Similarity=0.300 Sum_probs=114.8
Q ss_pred HHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHH
Q 012325 259 LYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKR 338 (466)
Q Consensus 259 i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~r 338 (466)
-++-|.|++++|+.+|||+.++.- | |.+-.|-.+++-|+.+.... . --+.+
T Consensus 68 ~eeiv~~v~~C~~~~GGfa~~~Gh--------------------d-~hll~TlsAvQiL~~ydsi~-~-------~d~d~ 118 (329)
T KOG0366|consen 68 REEIVSFVLSCQHEDGGFAGCPGH--------------------D-PHLLYTLSAVQILALYDSIN-V-------LDRDK 118 (329)
T ss_pred HHHHHHHHHheecCCCCcCCCCCC--------------------C-hHHHHHHHHHHHHHHHcccc-c-------ccHHH
Confidence 455689999999999999865421 1 23445777888888875431 1 12456
Q ss_pred HHHHHHHhcccCCCccc-cCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCC
Q 012325 339 AVKFIEKIQELDGSWYG-SWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNL 417 (466)
Q Consensus 339 a~~~L~~~Q~~DG~W~g-~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~ 417 (466)
-+.|+...|++||||.| .||.-.+--+..|+.+|.-.|.- +...+++|++|++++-|-|||+|-.
T Consensus 119 v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~l--d~~nve~aVd~~~~CyN~DGGFG~~------------ 184 (329)
T KOG0366|consen 119 VASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKL--DTINVEKAVDFVLSCYNFDGGFGCR------------ 184 (329)
T ss_pred HHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhH--HHhhHHHHHHHHHhhcccCCCcCCC------------
Confidence 68899999999999976 58876665566778888877764 5667889999999999999999863
Q ss_pred CCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhcc
Q 012325 418 EGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLE 456 (466)
Q Consensus 418 ~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q 456 (466)
+|..|+..|---.+-+|.-+|..+.-.-+.--.||.++|
T Consensus 185 pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ 223 (329)
T KOG0366|consen 185 PGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQ 223 (329)
T ss_pred CCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhcc
Confidence 367788888666666777777654433456667888887
No 46
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.27 E-value=1.4e-10 Score=112.87 Aligned_cols=221 Identities=17% Similarity=0.166 Sum_probs=141.4
Q ss_pred HHHhhhcceeeeCCCc-e-eecCCCCCcchHHHHHHHHHhcCCchh-hHHHHHHHHHHHHhccccCCCCCCcccccCCCC
Q 012325 137 HIPRINDYLWIAEDGM-K-VQGYNGSQLWDTAFAVQAIISTNLVEE-YGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (466)
Q Consensus 137 ~~~~l~~~~~~~~~G~-~-~q~~~~s~vwDTa~a~~AL~~ag~~~~-~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~ 213 (466)
+.+++..| ...||. . +.....+.+|-||+++..|.++..--. ....|.++++||+++|..+ |.|....+
T Consensus 2 GYqr~L~y--~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~d---G~F~e~~~--- 73 (246)
T PF07678_consen 2 GYQRQLSY--RRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPD---GSFEEDGP--- 73 (246)
T ss_dssp HHHHHHTT--B-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETT---SEB--SSS---
T ss_pred chHHHhcC--CCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC---CccccCCC---
Confidence 34556666 456763 2 212236889999999999998743221 1578999999999999987 66654222
Q ss_pred CCCCCCccCCCC--CCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceecccccccccccccc
Q 012325 214 KGAWPFSTADHG--WPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVL 291 (466)
Q Consensus 214 ~GGW~f~~~~~~--~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~ 291 (466)
-+...-.+ ..++..||.++.||...+...+. ..+.....+.+|++||.... ++
T Consensus 74 ----~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~--~~~~~~~~i~kA~~~L~~~~-~~------------------ 128 (246)
T PF07678_consen 74 ----VIHREMQGGVEDDIALTAYVLIALLEAGSLCDS--EKPEYENAINKALNYLERHL-DN------------------ 128 (246)
T ss_dssp -----SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTT--THHCHHHHHHHHHHHHHHHH-GC------------------
T ss_pred ----ccccccCCCCCCCeeehHHHHHHHHhhhhhccc--cchhhHHHHHHHHHHHHHhc-cc------------------
Confidence 11111111 23577999999999887532211 01234788999999997751 00
Q ss_pred CcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCc-----------
Q 012325 292 NPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC----------- 360 (466)
Q Consensus 292 ~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~----------- 360 (466)
...++..|.+-.||...+. .+...++.+-|.+....+|+- -.|+..
T Consensus 129 ------------~~~~Y~lAl~aYAL~la~~----------~~~~~~~~~~L~~~a~~~~~~-~~W~~~~~~~~~~~~~~ 185 (246)
T PF07678_consen 129 ------------IQDPYTLALVAYALALAGD----------SPQASKLLNKLNSMATTEGGL-RYWSSDESSSSSSSPWS 185 (246)
T ss_dssp ------------TSSHHHHHHHHHHHHHTTT----------CHHHHHHHHHHHCHCEETTTT-CEE-SSSSSSSSSSTTT
T ss_pred ------------cCCHHHHHHHHHHHHhhcc----------cchHHHHHHHHHHhhhhcccc-CcccCCccccccccccc
Confidence 0113344555566666652 146777778887776655432 122211
Q ss_pred -----ccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHH
Q 012325 361 -----FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALI 435 (466)
Q Consensus 361 -----~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~ 435 (466)
.+-.|++||.++...+ +.+...+.++||.+.|+..|||+.+ -.|..||.||.
T Consensus 186 ~~~s~~vEtTaYaLLa~l~~~----~~~~~~~iv~WL~~qr~~~Ggf~ST-------------------QdTvvaL~AL~ 242 (246)
T PF07678_consen 186 RGSSLDVETTAYALLALLKRG----DLEEASPIVRWLISQRNSGGGFGST-------------------QDTVVALQALA 242 (246)
T ss_dssp -SHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHCTTTTSSTSSH-------------------HHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHhcCCCCccCcH-------------------HHHHHHHHHHH
Confidence 1234899999998873 4578889999999999999999753 25899999997
Q ss_pred H
Q 012325 436 D 436 (466)
Q Consensus 436 ~ 436 (466)
+
T Consensus 243 ~ 243 (246)
T PF07678_consen 243 E 243 (246)
T ss_dssp H
T ss_pred H
Confidence 6
No 47
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.9e-10 Score=110.26 Aligned_cols=211 Identities=20% Similarity=0.277 Sum_probs=140.5
Q ss_pred CCCcchHHHHHHHHHhcCCch-hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHH
Q 012325 159 GSQLWDTAFAVQAIISTNLVE-EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLK 237 (466)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag~~~-~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~ 237 (466)
.+++=.|-+|++.|.-.+-.. ..+..-..-.+||...|+++ |.++. -.| +-.|.+. +-.
T Consensus 101 ~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pd---GsF~~-------~~~-------gevDtr~---~Y~ 160 (342)
T COG5029 101 DSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPD---GSFRS-------DLE-------GEVDTRF---LYI 160 (342)
T ss_pred chhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCC---Cceec-------ccC-------CcchHHH---HHH
Confidence 467778999999998764211 00111235688999999987 55542 122 1123333 222
Q ss_pred HhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHH
Q 012325 238 ASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQAL 317 (466)
Q Consensus 238 aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL 317 (466)
|+..+.-. | ..+.+-.+.+|+||.++||=||||+.-. -+| ++...|..++.+|
T Consensus 161 al~ilsll-----g-~~~~~~~e~~vdyl~kCqnyeGGFg~~p------------~aE---------aHag~tFcalaal 213 (342)
T COG5029 161 ALSILSLL-----G-DLDKELFEGAVDYLKKCQNYEGGFGLCP------------YAE---------AHAGYTFCALAAL 213 (342)
T ss_pred HHHHHHHH-----h-hcchhhhHHHHHHHHHhhccCCcccCCC------------chh---------hccchHHHHHHHH
Confidence 32222110 1 1346677889999999999999998532 122 2345678888899
Q ss_pred HhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccC----CCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHH
Q 012325 318 TSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW----GVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLL 393 (466)
Q Consensus 318 ~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~w----g~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll 393 (466)
+.+++..+- + .+++-+.||..+|-+.||+.||- -+|| .+|++..|.-.|.. .--.-.+-.+||+
T Consensus 214 alL~~Ld~l------s-~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CY---s~WvlsSl~il~~~--~~in~e~L~~yiL 281 (342)
T COG5029 214 ALLGKLDKL------S-DVEKLIRWLAERQLSSGGLNGRSNKLVDTCY---SFWVLSSLAILGKL--DFINTEELTDYIL 281 (342)
T ss_pred HHHhccccc------c-hHHHHHHHHHHcccccCCcCCCcccCccchh---hhhhcchHHhcchh--hhcCHHHHHHHHH
Confidence 998876432 2 27889999999999999998874 2455 56888888777643 1112235688999
Q ss_pred hccCC-CCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCC
Q 012325 394 SKQRP-SGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQV 440 (466)
Q Consensus 394 ~~Q~~-DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~ 440 (466)
.+|++ .||+... ++..+++.+|+++|.||...+..
T Consensus 282 ~c~q~~sGGfsdr------------p~~~~D~yHt~~~lagLsl~~~k 317 (342)
T COG5029 282 DCQQETSGGFSDR------------PGEEPDVYHTCFGLAGLSLIEYK 317 (342)
T ss_pred hhcccCCCCCCCC------------CcccchHHHHHHHHHHHHHhccC
Confidence 99988 6888653 36688999999999999887764
No 48
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.7e-10 Score=105.40 Aligned_cols=192 Identities=19% Similarity=0.277 Sum_probs=128.8
Q ss_pred HHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHH
Q 012325 185 LKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVN 264 (466)
Q Consensus 185 l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~ 264 (466)
-++.+.|++++|+.+ ||++-.. .+-|..--|-.|++-|..+...+ .--..+-+.
T Consensus 68 ~eeiv~~v~~C~~~~---------------GGfa~~~--Ghd~hll~TlsAvQiL~~ydsi~---------~~d~d~v~~ 121 (329)
T KOG0366|consen 68 REEIVSFVLSCQHED---------------GGFAGCP--GHDPHLLYTLSAVQILALYDSIN---------VLDRDKVAS 121 (329)
T ss_pred HHHHHHHHHheecCC---------------CCcCCCC--CCChHHHHHHHHHHHHHHHcccc---------cccHHHHHH
Confidence 466799999999964 6655332 23355666777777766554322 222445678
Q ss_pred HHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHH
Q 012325 265 VIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIE 344 (466)
Q Consensus 265 ~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~ 344 (466)
|+.+.|++||+|.. +.+|. +|.... -.++.+|+.++... .-.+++|++|+.
T Consensus 122 yi~gLq~edGsF~g----------------D~wGE--vDTRfs---~~av~~L~lLg~ld--------~~nve~aVd~~~ 172 (329)
T KOG0366|consen 122 YIKGLQQEDGSFSG----------------DIWGE--VDTRFS---YCAVACLALLGKLD--------TINVEKAVDFVL 172 (329)
T ss_pred HHHhhcCcCCcccC----------------Ccccc--cchhhh---HHHHHHHHHHhhHH--------HhhHHHHHHHHH
Confidence 99999999999941 11332 443333 33455555555432 135899999999
Q ss_pred HhcccCCCccccCCCc----ccch---------------------------------------------HHHHHHHHHHc
Q 012325 345 KIQELDGSWYGSWGVC----FTYG---------------------------------------------TWFGVKGLVAA 375 (466)
Q Consensus 345 ~~Q~~DG~W~g~wg~~----~~Y~---------------------------------------------T~~al~aL~~~ 375 (466)
+..|-||+|+-+-|.. -+|. +||++..|.-.
T Consensus 173 ~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~ii 252 (329)
T KOG0366|consen 173 SCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLAII 252 (329)
T ss_pred hhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHHHh
Confidence 9999999997543321 1110 68888888888
Q ss_pred cCCCCCcHHHHHHHHHHHhccC-CCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhH
Q 012325 376 GMNYSNSSSIRKACEFLLSKQR-PSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCC 445 (466)
Q Consensus 376 g~~~~~~~~i~ra~~~Ll~~Q~-~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i 445 (466)
|.. +--.-.+-.+|++++|. +.||+... +++...+.+|-+++-+|...|++.-++|
T Consensus 253 grl--~wId~ekL~~FIl~cQd~~~GGfsDR------------pgd~~D~fHt~FgiAGLSLlg~~~l~~i 309 (329)
T KOG0366|consen 253 GRL--HWIDREKLTKFILACQDEETGGFSDR------------PGDEVDIFHTLFGIAGLSLLGYPGLKPI 309 (329)
T ss_pred hhh--hhccHHHHHHHHHhcCCCCCCCcCCC------------CCCcccHHHHHHHHhhHhhhCCCCceec
Confidence 765 22334567899999998 66888653 2567789999999999999988754443
No 49
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.01 E-value=5.3e-09 Score=102.46 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=93.1
Q ss_pred cHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccc---------hHHHHHHHHHHccC--
Q 012325 309 CTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTY---------GTWFGVKGLVAAGM-- 377 (466)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y---------~T~~al~aL~~~g~-- 377 (466)
.|...|..|+.+-...+ ...+.+++.||++||++.|.++|||+..+.....| ++.-+|..|..+..
T Consensus 45 aT~~e~~fLa~~y~~t~---d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~ 121 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEK---NAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGK 121 (290)
T ss_pred cHHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhcc
Confidence 47778888888754322 35567899999999999999999998766432222 25567777755421
Q ss_pred C----------CCCcHHHHHHHHHHHhccCCCCC----CCCccccc-----ccccccCCCCCCCch-hHHHHHHHHHHHc
Q 012325 378 N----------YSNSSSIRKACEFLLSKQRPSGG----WGESYLSC-----QKKVYSNLEGDRSHV-VNTAWAMLALIDA 437 (466)
Q Consensus 378 ~----------~~~~~~i~ra~~~Ll~~Q~~DGg----Wge~~~s~-----~~~~y~~~~~~~s~~-~~TA~ALlaL~~a 437 (466)
. ....++++||++||++.|-.+|| |+..+... ....|-| +|-. ..|+-.|..||..
T Consensus 122 ~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~----pSls~~ES~~iv~~LM~~ 197 (290)
T TIGR02474 122 DPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYEL----PSLSSSESVGILLFLMTQ 197 (290)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCC----cccccccHHHHHHHHhcC
Confidence 1 02357899999999999988875 55443211 1122322 2322 3467777888877
Q ss_pred CCCCc---hhHHHHHHHHHhcc
Q 012325 438 GQVRI---NCCCSTLKVTLSLE 456 (466)
Q Consensus 438 g~~~~---~~i~rgv~~L~~~q 456 (466)
..+.. ++|+.|++||.+..
T Consensus 198 ~~ps~~i~~ai~~A~~W~~~~~ 219 (290)
T TIGR02474 198 PNPSAEIKEAIRAGVAWFDTSR 219 (290)
T ss_pred CCCCHHHHHHHHHHHHHHHHCC
Confidence 65543 36899999997653
No 50
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=5.1e-09 Score=101.74 Aligned_cols=159 Identities=18% Similarity=0.129 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHH
Q 012325 258 RLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIK 337 (466)
Q Consensus 258 ~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ 337 (466)
.-++.+.++++++++.|||+.+... -+....|-.+|..|..++..+--.+ ..-+
T Consensus 76 ~~er~i~~v~~~~~~~G~f~~~~g~---------------------~~hL~sT~~Ai~~L~~~d~~~~~~~-----idr~ 129 (342)
T COG5029 76 DKERKISFVLGCVGPSGGFGGGPGQ---------------------DSHLASTVFAIQSLAMLDSLDVLSR-----IDRD 129 (342)
T ss_pred hhhhhheeeeeeecCCCCcCCCCcc---------------------chhHHHHHHHHHHHHHhccccccch-----hhHH
Confidence 3456788999999999999754321 1235578889999998864321111 1233
Q ss_pred HHHHHHHHhcccCCCccc-cCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccC
Q 012325 338 RAVKFIEKIQELDGSWYG-SWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSN 416 (466)
Q Consensus 338 ra~~~L~~~Q~~DG~W~g-~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~ 416 (466)
+-..||.+.|+|||+|.+ .+|...+-....|+..|.-.|. .+.+-..-+++||.++||-|||+|--
T Consensus 130 ~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~--~~~~~~e~~vdyl~kCqnyeGGFg~~----------- 196 (342)
T COG5029 130 SLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGD--LDKELFEGAVDYLKKCQNYEGGFGLC----------- 196 (342)
T ss_pred HHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHhhccCCcccCC-----------
Confidence 668899999999999965 3555444444456666666664 35677788999999999999999863
Q ss_pred CCCCCCchhHHHHHHHHHHHcCCCCch-hHHHHHHHHHhcc
Q 012325 417 LEGDRSHVVNTAWAMLALIDAGQVRIN-CCCSTLKVTLSLE 456 (466)
Q Consensus 417 ~~~~~s~~~~TA~ALlaL~~ag~~~~~-~i~rgv~~L~~~q 456 (466)
++..++..+|.-||-+|...+..+.- .+++-+.||.++|
T Consensus 197 -p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ 236 (342)
T COG5029 197 -PYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQ 236 (342)
T ss_pred -CchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcc
Confidence 24456677776666666655544332 2899999999888
No 51
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=7.8e-08 Score=94.38 Aligned_cols=208 Identities=19% Similarity=0.272 Sum_probs=128.9
Q ss_pred HHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCC
Q 012325 135 KLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISK 214 (466)
Q Consensus 135 ~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~ 214 (466)
++|+..|...+-.-+.-+ ..-+-|..|=.=+++.+|.-.+..-+ ++..+++++||...|.++
T Consensus 75 ~kH~~YL~~~Lr~Lp~~~--~~LDASR~Wm~YWil~sl~lL~~~~d-d~v~~~~i~fL~~c~~Pe--------------- 136 (423)
T KOG0365|consen 75 QKHLMYLDKMLRQLPSQY--TCLDASRPWMCYWILNSLALLDEWLD-DDVKENAIDFLFTCQGPE--------------- 136 (423)
T ss_pred HHHHHHHHHHHHhCCCcc--cccccCcchhHHHHHHHHHHhcCcCC-HHHHHHHHHHHHhcCCCC---------------
Confidence 466666665533222221 12235778888888888877664322 578999999999999876
Q ss_pred CCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHH--HHHHHHHHhhccCCCceeccccccccccccccC
Q 012325 215 GAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRL--YDSVNVIFSLQNADGGFATYELMRSYPWLEVLN 292 (466)
Q Consensus 215 GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i--~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~ 292 (466)
||++ -.+..+|..--|=.|+.||..++.... -..| .+-.+||.++.++||||.-...
T Consensus 137 GGfg--GGPGQl~HLA~TYAAVnaL~~~~~e~A--------~~~InR~~l~~fL~slK~~dGgFrmh~~----------- 195 (423)
T KOG0365|consen 137 GGFG--GGPGQLPHLAPTYAAVNALCLCGSEDA--------YSSINREKLYQFLFSLKDPDGGFRMHVE----------- 195 (423)
T ss_pred CCCC--CCCccchhhhHHHHHHHHHHhcCcHHH--------HHHhhHHHHHHHHHHhcCCCCCeEeecC-----------
Confidence 4422 234556788889899999987754221 1222 3457999999999999963221
Q ss_pred cccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccch--HHHHHH
Q 012325 293 PAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYG--TWFGVK 370 (466)
Q Consensus 293 ~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~--T~~al~ 370 (466)
| .+|-..++|...|- .|... +. ++..+.-.+||.+.|+=.|+++|.-|. ...| |..++.
T Consensus 196 -----G--E~DvRs~YcA~sva-sllni----~~------deL~eG~~~wi~~CQtyEGG~GG~P~~-EAHGGYTFCalA 256 (423)
T KOG0365|consen 196 -----G--EVDVRSAYCALSVA-SLLNI----PM------DELFEGTLDWIASCQTYEGGFGGEPGV-EAHGGYTFCALA 256 (423)
T ss_pred -----C--cchHHHHHHHHHHH-HHHCC----Cc------HHHHHHHHHHHHhcccccCCcCCCccc-cccCCeeHHHHH
Confidence 1 12332233322222 22211 21 245667789999999999999874332 1111 566666
Q ss_pred HHHHccCCCCCcHHHHHHHHHHHhccC-CCCCC
Q 012325 371 GLVAAGMNYSNSSSIRKACEFLLSKQR-PSGGW 402 (466)
Q Consensus 371 aL~~~g~~~~~~~~i~ra~~~Ll~~Q~-~DGgW 402 (466)
||+..+.. +.-.+++-.+|..++|. ..||+
T Consensus 257 alalLn~~--d~ln~~~Ll~W~~~RQm~~E~GF 287 (423)
T KOG0365|consen 257 ALALLNEM--DQLNLEKLLEWAVRRQMRFEGGF 287 (423)
T ss_pred HHHHHhhh--hhhCHHHHHHHHHHhhhhhhccc
Confidence 76666543 44456778888888887 56665
No 52
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.2e-06 Score=84.55 Aligned_cols=271 Identities=20% Similarity=0.215 Sum_probs=148.8
Q ss_pred HHHHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCchhhHH-HHHHHHHHHHhccccCCCCCCc-ccccC
Q 012325 133 AFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGA-TLKKAHKYIKDSQVLEDCPGNL-DFWYR 210 (466)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~-~l~~a~~wL~~~Q~~~~~~Gdw-~~~~~ 210 (466)
..+||+..+++.+-. -.++++..++=-++++..|+.-..+-+..+. .-+.-++|+.+.|+...-.+.- ...++
T Consensus 12 ~~~kH~~ff~RhL~l-----lP~~y~shd~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~ 86 (347)
T KOG0367|consen 12 ERKKHIKFFERHLQL-----LPSPYQSHDTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGFR 86 (347)
T ss_pred hHHHHHHHHHHHHHh-----CCCcccccccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeeee
Confidence 467888887776432 1334444555567777777654433221110 1344689999999974101110 11123
Q ss_pred CCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccc
Q 012325 211 HISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEV 290 (466)
Q Consensus 211 ~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~ 290 (466)
....+.-++.+.+...|. +|.+..+|..+.-...+. ..++.+++ ++++..+|.+||+|-+-..
T Consensus 87 Gsr~~~~p~~~~~~~~~~---lA~Ty~sl~~L~~lGddL--srlDrksi---l~~v~~~Q~~dGsF~~~~~--------- 149 (347)
T KOG0367|consen 87 GSRSMNIPIATNTYNEPH---LAMTYTSLACLVILGDDL--SRLDRKSI---LRFVSACQRPDGSFVSINV--------- 149 (347)
T ss_pred eeccccCCCCCCCCcchh---HHHHHHHHHHHHHHcchH--hhhhHHHH---HHHHHHhcCCCCceeecCC---------
Confidence 333344444442222343 444444444332211111 12334444 4677889999999963211
Q ss_pred cCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCC-CcccchHHHHH
Q 012325 291 LNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG-VCFTYGTWFGV 369 (466)
Q Consensus 291 ~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg-~~~~Y~T~~al 369 (466)
++| .|-..++|.+.+...|...... --++++.||++.|+=||+++-.-| ....=.|..|+
T Consensus 150 --GSe------~DmRFvYcA~aI~ymLd~~s~i-----------D~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAl 210 (347)
T KOG0367|consen 150 --GSE------SDMRFVYCAVAICYMLDFWSGI-----------DKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCAL 210 (347)
T ss_pred --CCc------hhhHHHHHHHHHHHHhcccccc-----------CHHHHHHHHHHhhccccccccCCCCCCCcchhHHHH
Confidence 111 1223355655555555533221 256889999999999999964322 22222377788
Q ss_pred HHHHHccCC--C--CCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchh-
Q 012325 370 KGLVAAGMN--Y--SNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINC- 444 (466)
Q Consensus 370 ~aL~~~g~~--~--~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~- 444 (466)
.+|...|.- . .+...+.|-++||+.+|..+||+... ...++-|.||.=.+......+.+.
T Consensus 211 AsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR---------------~NKp~DTCYaFWigasLklL~~~~~ 275 (347)
T KOG0367|consen 211 ASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGR---------------TNKPVDTCYAFWIGASLKLLDADWL 275 (347)
T ss_pred HHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCC---------------CCCCchhHHHHHHHHHHHHccchHh
Confidence 888776643 1 12334899999999999999997542 233567777764444433332222
Q ss_pred --HHHHHHHHHhccCCc
Q 012325 445 --CCSTLKVTLSLEREF 459 (466)
Q Consensus 445 --i~rgv~~L~~~q~~~ 459 (466)
-.+--+||++.|..+
T Consensus 276 ~d~~~lr~fll~~Q~~~ 292 (347)
T KOG0367|consen 276 IDKQVLRKFLLSTQDKL 292 (347)
T ss_pred hhHHHHHHHHHHhhhhh
Confidence 345667999988654
No 53
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.6e-07 Score=90.82 Aligned_cols=169 Identities=16% Similarity=0.160 Sum_probs=113.4
Q ss_pred ccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhh
Q 012325 253 PIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDV 332 (466)
Q Consensus 253 ~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i 332 (466)
.++++...++|++|..+|.|.|||+.-. -..++...|-+++.+|...+... .++ .|
T Consensus 116 ~~dd~v~~~~i~fL~~c~~PeGGfgGGP---------------------GQl~HLA~TYAAVnaL~~~~~e~-A~~--~I 171 (423)
T KOG0365|consen 116 WLDDDVKENAIDFLFTCQGPEGGFGGGP---------------------GQLPHLAPTYAAVNALCLCGSED-AYS--SI 171 (423)
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCCCC---------------------ccchhhhHHHHHHHHHHhcCcHH-HHH--Hh
Confidence 4678999999999999999999986311 12345667889999999987531 221 11
Q ss_pred HHHHHHHHHHHHHhcccCCCccccC-CCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCccccccc
Q 012325 333 DHCIKRAVKFIEKIQELDGSWYGSW-GVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQK 411 (466)
Q Consensus 333 ~~~i~ra~~~L~~~Q~~DG~W~g~w-g~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~ 411 (466)
--.+-..||.+..++||||.-.- |...+-+...|+.--...+.. .++--+-..+||.++|+-.||+|.-.
T Consensus 172 --nR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~--~deL~eG~~~wi~~CQtyEGG~GG~P----- 242 (423)
T KOG0365|consen 172 --NREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIP--MDELFEGTLDWIASCQTYEGGFGGEP----- 242 (423)
T ss_pred --hHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhcccccCCcCCCc-----
Confidence 12356899999999999996432 223333333344333444554 44666678999999999999998631
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCCccC
Q 012325 412 KVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLEREFSI 461 (466)
Q Consensus 412 ~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~~~~ 461 (466)
+...+-.=|--||-+|.-.+..+.--+++-++|...+|-.|+-
T Consensus 243 -------~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~ 285 (423)
T KOG0365|consen 243 -------GVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEG 285 (423)
T ss_pred -------cccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhc
Confidence 2122222355666666655555555688899999988876653
No 54
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=98.61 E-value=3e-07 Score=90.31 Aligned_cols=141 Identities=12% Similarity=0.136 Sum_probs=83.4
Q ss_pred CcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCc------ccch---HHHHHHHHHHccCC
Q 012325 308 ECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC------FTYG---TWFGVKGLVAAGMN 378 (466)
Q Consensus 308 ~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~------~~Y~---T~~al~aL~~~g~~ 378 (466)
+.|...|..|+.+-... ..+.+..++.||++||++.|-++|||+..|... .+|. ..-+|.-|..+...
T Consensus 39 ~aT~~ei~fLa~~y~~t---~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~ 115 (289)
T PF09492_consen 39 DATTTEIRFLARVYQAT---KDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEG 115 (289)
T ss_dssp GTTHHHHHHHHHHHHHC---G-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhh
Confidence 35788888898876542 346778999999999999999999998876422 2222 33345555544222
Q ss_pred ---C---------CCcHHHHHHHHHHHhccCCC----CCCCCccccc-----ccccccCCCCCCCc-hhHHHHHHHHHHH
Q 012325 379 ---Y---------SNSSSIRKACEFLLSKQRPS----GGWGESYLSC-----QKKVYSNLEGDRSH-VVNTAWAMLALID 436 (466)
Q Consensus 379 ---~---------~~~~~i~ra~~~Ll~~Q~~D----GgWge~~~s~-----~~~~y~~~~~~~s~-~~~TA~ALlaL~~ 436 (466)
+ ....++.||+++|+..|-.- -+|+..+... ....|-| +|- ...|+-.|..||.
T Consensus 116 ~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~----pSls~~ES~~iv~~LM~ 191 (289)
T PF09492_consen 116 KGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEP----PSLSGSESVGIVRFLMS 191 (289)
T ss_dssp -TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT------SSEECCCHHHHHHHHCT
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCC----cccccccHHHHHHHHhc
Confidence 1 12468889999999999832 3688654321 1122332 232 2457888888988
Q ss_pred cCCCCc---hhHHHHHHHHHhc
Q 012325 437 AGQVRI---NCCCSTLKVTLSL 455 (466)
Q Consensus 437 ag~~~~---~~i~rgv~~L~~~ 455 (466)
...+.. .+|+.|++||.+.
T Consensus 192 ~~~ps~~v~~aI~~AvaWl~~~ 213 (289)
T PF09492_consen 192 LPNPSPEVLAAIEAAVAWLESV 213 (289)
T ss_dssp SSS--HHHHHHHHHHHHHHCCT
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 766543 3688999999654
No 55
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.9e-05 Score=76.47 Aligned_cols=146 Identities=19% Similarity=0.197 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHH
Q 012325 258 RLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIK 337 (466)
Q Consensus 258 ~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ 337 (466)
...+++.||.+.|+=||||+.- |..| ++...|..+|.+|+..++..|+.-.. +..++
T Consensus 175 D~ek~~~yI~~~q~YdgGfg~~------------pg~E---------sHgG~TfCAlAsL~L~~~l~~e~l~~--~~~~e 231 (347)
T KOG0367|consen 175 DKEKLIGYIRSSQRYDGGFGQH------------PGGE---------SHGGATFCALASLALMGKLIPEELSN--TSKVE 231 (347)
T ss_pred CHHHHHHHHHHhhccccccccC------------CCCC---------CCcchhHHHHHHHHHHhhhhhhhhcc--ccCHH
Confidence 3578999999999999999742 2122 33445777888888877653321100 12389
Q ss_pred HHHHHHHHhcccCCCccccCCC-cccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCC-CCCCCccccccccccc
Q 012325 338 RAVKFIEKIQELDGSWYGSWGV-CFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS-GGWGESYLSCQKKVYS 415 (466)
Q Consensus 338 ra~~~L~~~Q~~DG~W~g~wg~-~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D-GgWge~~~s~~~~~y~ 415 (466)
|-++|+..+|..+||+.||-.- ..+=-..|+...|...+.. .--.-++-.+||+++|..- ||+...
T Consensus 232 rlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~--~~~d~~~lr~fll~~Q~~~iGGFsK~---------- 299 (347)
T KOG0367|consen 232 RLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDAD--WLIDKQVLRKFLLSTQDKLIGGFSKW---------- 299 (347)
T ss_pred HHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccch--HhhhHHHHHHHHHHhhhhhcCcccCC----------
Confidence 9999999999999999987421 1111245667777766543 1122335678999999887 998642
Q ss_pred CCCCCCCchhHHHHHHHHHHHcCCC
Q 012325 416 NLEGDRSHVVNTAWAMLALIDAGQV 440 (466)
Q Consensus 416 ~~~~~~s~~~~TA~ALlaL~~ag~~ 440 (466)
+++.+++.+|++.+-||...+++
T Consensus 300 --P~~~pD~~HsylG~~alal~ee~ 322 (347)
T KOG0367|consen 300 --PEEDPDLLHSYLGLAALALLEEK 322 (347)
T ss_pred --CccCchHHHHHHHHHHHHHhcCC
Confidence 24568899999999888887764
No 56
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.34 E-value=1.5e-05 Score=74.00 Aligned_cols=252 Identities=19% Similarity=0.198 Sum_probs=136.4
Q ss_pred HHHHHHHHHhhcC-Cccccccchh----h-H--HHhhhhccccCCCcHHHHHHHHhhhcceeeeCCCceeecCCCCCcch
Q 012325 93 LRNAIKHIHYEDE-NTRYLCIGPV----N-K--VLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWD 164 (466)
Q Consensus 93 l~~~~~~i~~~~~-~~~~~~~~pv----~-~--~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~G~~~q~~~~s~vwD 164 (466)
++++.++|+.+.. .+||+...|+ + | |+.++-+.+.+ -|...+.+++|.+.+ |-. +..
T Consensus 8 l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~e--vPr~EktiefL~d~~---------qt~-~~~--- 72 (274)
T COG1689 8 LNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHE--VPRKEKTIEFLYDQM---------QTA-GVG--- 72 (274)
T ss_pred HHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCc--CchHHHHHHHHHHHH---------HHh-hhH---
Confidence 4556667765553 4557555553 1 2 23333333333 345789999998842 211 111
Q ss_pred HHHHHHHHHhcCCch-hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhh
Q 012325 165 TAFAVQAIISTNLVE-EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLS 243 (466)
Q Consensus 165 Ta~a~~AL~~ag~~~-~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~ 243 (466)
-+.++.+|.-.|..+ .....+. .++.-....+ .+.... .|.-.|...+ -..+|=.+..+|.+..
T Consensus 73 ~a~~~~~l~~lg~~d~~r~~~~l---~~~~~~~~e~----Kf~~~l----ggs~~f~t~~----~Le~ty~~~~~l~~~n 137 (274)
T COG1689 73 VAMAIEFLRILGAKDLARNKMLL---LFLKYNPLEE----KFAVGL----GGSEEFGTAT----PLEATYWMMSALNMVN 137 (274)
T ss_pred HHHHHHHHHHhcccccchhhHHH---HHhhcCchhH----HHhhhc----CceeecCCCc----hHHHHHHHHHHHHHhC
Confidence 355566666666543 1122222 2333222221 111111 1322332221 2456666666665432
Q ss_pred cccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhh
Q 012325 244 KLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKL 323 (466)
Q Consensus 244 ~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~ 323 (466)
.+..+..-+|+++.|+.+|++.+|. ++.|.. -...+||-.++..
T Consensus 138 ------------~~~~eE~k~~v~~~~re~~~g~~YG---------------------v~~pnt---~~t~~aly~l~~k 181 (274)
T COG1689 138 ------------YEYLEEMKEKVIEFVREFGIGDAYG---------------------VTHPNT---TMTYQALYTLGSK 181 (274)
T ss_pred ------------cCchHHHHHHHHHHhhhhccccccc---------------------cCCcch---HHHHHHHHhhccc
Confidence 1233445678999999999887654 344433 3444455444322
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCC--cccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCC
Q 012325 324 YPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGV--CFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGG 401 (466)
Q Consensus 324 ~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~--~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGg 401 (466)
.+ +..-..| ...--.+|+|...-++ +|+-.|..|+.+|...+.. -.+.+-++|+.+.||+|||
T Consensus 182 ~~----------~~~v~~F-e~~c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k----~~i~~~~rFI~slqN~nGG 246 (274)
T COG1689 182 GP----------KEEVRHF-ELCCGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGK----YCISDHIRFIRSLQNQNGG 246 (274)
T ss_pred cc----------hHHHHhH-HhccccCCCcccCCCCCCCccchHHHHHhHHHHHccC----cCchHHHHHHHHhhcCCCC
Confidence 12 2222223 2223344555432222 3455689999999988765 3466788999999999999
Q ss_pred CCCcccccccccccCCCCCCCchhHHHHHHHHHHH
Q 012325 402 WGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID 436 (466)
Q Consensus 402 Wge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ 436 (466)
+.-+. +++-|+...|-.||-.|..
T Consensus 247 FRRS~-----------~~GISt~e~tYrAl~~L~~ 270 (274)
T COG1689 247 FRRSY-----------ELGISTFENTYRALASLAS 270 (274)
T ss_pred eeeeE-----------eccccchHHHHHHHHHHHH
Confidence 98753 2568999999888877654
No 57
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=98.33 E-value=1.2e-06 Score=86.20 Aligned_cols=158 Identities=13% Similarity=0.183 Sum_probs=91.6
Q ss_pred CchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCC
Q 012325 228 ISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCV 307 (466)
Q Consensus 228 d~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~ 307 (466)
|-+.|...|.-|+.+.... +.+...+++.||++||++.|-++|||+=|=+.+.. +..+|- |. =
T Consensus 37 DN~aT~~ei~fLa~~y~~t----~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~-Y~~~IT----fN--------D 99 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQAT----KDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGG-YHDHIT----FN--------D 99 (289)
T ss_dssp GGGTTHHHHHHHHHHHHHC----G-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SG-GGGSEE-----G--------G
T ss_pred cChhHHHHHHHHHHHHHHh----CChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCC-CCCceE----Ec--------c
Confidence 4456888888887765422 33456899999999999999999999864332221 212111 21 1
Q ss_pred CcHHHHHHHHHhhhhhCCCC------chhhhHHHHHHHHHHHHHhcccCCCccccCCCcc-------------------c
Q 012325 308 ECTSASIQALTSFKKLYPGH------WQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCF-------------------T 362 (466)
Q Consensus 308 ~~Ta~vl~aL~~~~~~~~~~------~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~-------------------~ 362 (466)
+....+|..|..+....+.+ .+.++..++.||+++|++.|-..++=...|+.-| .
T Consensus 100 dam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~ 179 (289)
T PF09492_consen 100 DAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSG 179 (289)
T ss_dssp GHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEEC
T ss_pred HHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCccccc
Confidence 35667888887765443333 2356788999999999999973332222233211 1
Q ss_pred chHHHHHHHHHHccCC-CCCcHHHHHHHHHHHhccCCCCCC
Q 012325 363 YGTWFGVKGLVAAGMN-YSNSSSIRKACEFLLSKQRPSGGW 402 (466)
Q Consensus 363 Y~T~~al~aL~~~g~~-~~~~~~i~ra~~~Ll~~Q~~DGgW 402 (466)
-.|+-++.-|...-.+ .....+|..|++||.++.-++.-|
T Consensus 180 ~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~ 220 (289)
T PF09492_consen 180 SESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRW 220 (289)
T ss_dssp CCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCcee
Confidence 1266667666665432 012345667999999887766544
No 58
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.09 E-value=7.8e-06 Score=57.61 Aligned_cols=43 Identities=40% Similarity=0.526 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcC
Q 012325 384 SIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAG 438 (466)
Q Consensus 384 ~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag 438 (466)
.++++++||+++|++||||+... +..+++..|.||+.+|...|
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~------------~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRP------------GGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSST------------TSSBBHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCCCCCC------------CCCCChHHHHHHHHHHHHcC
Confidence 36899999999999999999852 44688999999999987654
No 59
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=97.98 E-value=1.2e-05 Score=56.62 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcccCCCccccCCCc-ccchHHHHHHHHHHcc
Q 012325 336 IKRAVKFIEKIQELDGSWYGSWGVC-FTYGTWFGVKGLVAAG 376 (466)
Q Consensus 336 i~ra~~~L~~~Q~~DG~W~g~wg~~-~~Y~T~~al~aL~~~g 376 (466)
++++++||++.|++||+|.++++.. .++.|++++.+|...|
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 7899999999999999999988765 7889999999998764
No 60
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.86 E-value=0.00024 Score=66.18 Aligned_cols=215 Identities=20% Similarity=0.231 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCc-hhhHHHHHHhHhhhcccccccCCccchHHHHHH
Q 012325 184 TLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPIS-DCTSEGLKASLLLSKLSSAIVGEPIETKRLYDS 262 (466)
Q Consensus 184 ~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~-D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~a 262 (466)
.+.+.++||..+|+.| ||..|-. .-||+ .+|=.|++.+..++. +.++.++.
T Consensus 7 ~l~rvi~fi~~Rrhed---------------GGy~f~~---~Lpdti~~TyYAi~i~s~lg~----------evPr~Ekt 58 (274)
T COG1689 7 NLNRVIEFIEKRRHED---------------GGYCFVS---QLPDTINDTYYAIKIYSLLGH----------EVPRKEKT 58 (274)
T ss_pred hHHHHHHHHHHhhcCC---------------CCeEEec---cCcchhhhhhhhhhhhhhcCC----------cCchHHHH
Confidence 4788899999999976 8877743 23555 778888887766543 24567899
Q ss_pred HHHHHh-hccCCCceecc----------ccccccc---cccccCccc-cc----CCc-c-ccCCCCCcHHHHHHHHHhhh
Q 012325 263 VNVIFS-LQNADGGFATY----------ELMRSYP---WLEVLNPAE-TF----GDI-V-IDYPCVECTSASIQALTSFK 321 (466)
Q Consensus 263 v~~Ll~-~Qn~dGgw~~~----------~~~~~~~---~l~~~~~~e-~f----g~~-~-~d~~~~~~Ta~vl~aL~~~~ 321 (466)
++||.+ ||..-+|++.- +.++++- +++.+ |.| -| |.. . ..+...+.|-.+..+|...+
T Consensus 59 iefL~d~~qt~~~~~a~~~~~l~~lg~~d~~r~~~~l~~~~~~-~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n 137 (274)
T COG1689 59 IEFLYDQMQTAGVGVAMAIEFLRILGAKDLARNKMLLLFLKYN-PLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVN 137 (274)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcccccchhhHHHHHhhcC-chhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhC
Confidence 999987 78888888641 1122211 11112 221 11 110 0 01111345556666777665
Q ss_pred hhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCC
Q 012325 322 KLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGG 401 (466)
Q Consensus 322 ~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGg 401 (466)
..++ +.--+|+++.|+++|... .+|+... .|-++.+||.-.+.. . .+.. +.....+--++||
T Consensus 138 ~~~~-----------eE~k~~v~~~~re~~~g~-~YGv~~p-nt~~t~~aly~l~~k-~---~~~~-v~~Fe~~c~~~Gg 199 (274)
T COG1689 138 YEYL-----------EEMKEKVIEFVREFGIGD-AYGVTHP-NTTMTYQALYTLGSK-G---PKEE-VRHFELCCGDWGG 199 (274)
T ss_pred cCch-----------HHHHHHHHHHhhhhcccc-ccccCCc-chHHHHHHHHhhccc-c---chHH-HHhHHhccccCCC
Confidence 3322 222357788888887653 3444332 244555555554433 1 1122 2233344567788
Q ss_pred CCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 402 WGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 402 Wge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
|.+...|| ++-...|-+|+-+|...+.. -.+.+.++|+++.|++
T Consensus 200 f~~~P~sy-----------PPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~slqN~ 243 (274)
T COG1689 200 FTEVPNSY-----------PPYIEPTFYALRGLELLGGK--YCISDHIRFIRSLQNQ 243 (274)
T ss_pred cccCCCCC-----------CCccchHHHHHhHHHHHccC--cCchHHHHHHHHhhcC
Confidence 88764433 23356788999888877663 4678899999999864
No 61
>PLN02592 ent-copalyl diphosphate synthase
Probab=97.83 E-value=0.00048 Score=76.86 Aligned_cols=92 Identities=14% Similarity=0.236 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhccc-CCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCC-CCCCccccccccc
Q 012325 336 IKRAVKFIEKIQEL-DGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG-GWGESYLSCQKKV 413 (466)
Q Consensus 336 i~ra~~~L~~~Q~~-DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG-gWge~~~s~~~~~ 413 (466)
-.++++||.+.... +|+-+.-+... .+...+.+-.|...|..+.-.+.|+..++.+.+.-...| ||+..
T Consensus 284 d~~cl~YL~~~~~k~~GgVP~vyP~d-~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~-------- 354 (800)
T PLN02592 284 DENCLEYLNKAVQRFNGGVPNVYPVD-LFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARN-------- 354 (800)
T ss_pred chHHHHHHHHHHHHcCCCCCCCCCCc-HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccC--------
Confidence 36788999886544 45444434332 346788999999999998788999999999986322222 44211
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHcCCCC
Q 012325 414 YSNLEGDRSHVVNTAWAMLALIDAGQVR 441 (466)
Q Consensus 414 y~~~~~~~s~~~~TA~ALlaL~~ag~~~ 441 (466)
....+...||.++..|-..|+.-
T Consensus 355 -----~~~~Dld~TALaFRLLRqhGy~V 377 (800)
T PLN02592 355 -----SHVHDIDDTAMGFRLLRLHGHQV 377 (800)
T ss_pred -----CCcCCHHHHHHHHHHHHHcCCCC
Confidence 01245678999999998888754
No 62
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=97.67 E-value=0.0004 Score=69.53 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=67.2
Q ss_pred CCcHHHHHHHHHhhhhhCCC--CchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCC-cH
Q 012325 307 VECTSASIQALTSFKKLYPG--HWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSN-SS 383 (466)
Q Consensus 307 ~~~Ta~vl~aL~~~~~~~~~--~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~-~~ 383 (466)
+|.+|.++.||.=+....+. .....|+.+|++.++.|.+.|.+||.++ .+|.|+.|++||...+..+.. ..
T Consensus 186 VDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G------NiySTglAmQAL~~~~~~~~~~~w 259 (326)
T PF01122_consen 186 VDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG------NIYSTGLAMQALSVSPSPPSESEW 259 (326)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS------STTTHHHHHHHHTT-SS-SSHHHH
T ss_pred ccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc------chhhHHHHHHHHhcCCCCCcchhh
Confidence 77889999999877653322 1236788899999999999999999986 489999999999999886322 35
Q ss_pred HHHHHHHHHHhccCCCCCCCC
Q 012325 384 SIRKACEFLLSKQRPSGGWGE 404 (466)
Q Consensus 384 ~i~ra~~~Ll~~Q~~DGgWge 404 (466)
...++.+.|++. -++|.|..
T Consensus 260 ~C~k~~~~ll~~-i~~G~F~n 279 (326)
T PF01122_consen 260 NCQKALDALLKE-ISQGAFQN 279 (326)
T ss_dssp HHHHHHHHHHHH-HTTTTT-S
T ss_pred HHHHHHHHHHHH-hhcCCCCC
Confidence 677899999985 46887653
No 63
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00067 Score=79.92 Aligned_cols=236 Identities=20% Similarity=0.199 Sum_probs=129.8
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhc
Q 012325 165 TAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSK 244 (466)
Q Consensus 165 Ta~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~ 244 (466)
+-+++..|-+++.-. ...=++|.++|..--.+.. .|++. .|....+-........+.||.+|+.|....+
T Consensus 948 ni~v~~YL~~t~q~~--~~~k~ka~~~l~~GyqrqL-------~yk~~-DgSySaFg~~~~~~stWLtafvlr~f~~a~~ 1017 (1436)
T KOG1366|consen 948 NIYVLKYLPKTNQLT--PELKRKALKFLEQGYQRQL-------TYKRA-DGSYSAFGSSDRSGSTWLTAFVLRVFSQAKE 1017 (1436)
T ss_pred hhhHHHHHhhhhccC--hhHHHHHHHHHHHHHHHHH-------hhhcc-CCChhhhcCCCCcccHHHHHHHHHHhhhccC
Confidence 457788888775432 2233556666655433221 11111 1222222123345679999999999876532
Q ss_pred ccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccC--CCCCcHHHHHHHHHhhhh
Q 012325 245 LSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDY--PCVECTSASIQALTSFKK 322 (466)
Q Consensus 245 ~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~--~~~~~Ta~vl~aL~~~~~ 322 (466)
...++...+.+|++||..+|.+||.|.. +++++.+.|... .....|+.++..+....
T Consensus 1018 ------~i~id~~~i~~a~~wl~~~Qk~~GsF~e--------------~~~v~~~~~qg~l~~~~~l~~~~l~~~~~~~- 1076 (1436)
T KOG1366|consen 1018 ------YIFIDPNVITQALNWLSQQQKENGSFKE--------------VGEVLHNEMQGGLQDIVALTAIVLSVILDVD- 1076 (1436)
T ss_pred ------ceEecHHHHHHHHHHHHHhhccCceEec--------------cccccchhhhcCCCCcceeeeEeeeeeccch-
Confidence 1245778899999999999999999953 122222222111 00112222222111110
Q ss_pred hCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCC--
Q 012325 323 LYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG-- 400 (466)
Q Consensus 323 ~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG-- 400 (466)
...+++++.|+.+.-.. | ....|..+....||..++.+ ...+++.-|...-...|
T Consensus 1077 ----------~~~~~~a~~~~~~~~~~-~-------~~~~~~~a~~ayAl~l~~sp-----~a~~~~~~l~~~a~~~~d~ 1133 (1436)
T KOG1366|consen 1077 ----------NASIQKAVAYLEESLDS-G-------SMDVYTVAITAYALQLAKSP-----QAAKALAKLKSLARVEGDR 1133 (1436)
T ss_pred ----------hhHHHHHHHHHhhccCc-c-------ccccchHHHHHHHHHhccCc-----hHHHHHHhhhhhhcccCCc
Confidence 25689999999876422 2 23567777777788877654 22333333444332222
Q ss_pred -CCCCccccccccc-ccCCCCCCC-chhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 401 -GWGESYLSCQKKV-YSNLEGDRS-HVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 401 -gWge~~~s~~~~~-y~~~~~~~s-~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
.|........++. |.+ ...| .+..||||||+++...+.+ .+-..++||.++++.
T Consensus 1134 ~~~~~~~~~~~~~~~~~~--q~~s~~VE~tsYaLL~~~~~~~~~--~~~pivrWl~~qr~~ 1190 (1436)
T KOG1366|consen 1134 RYWWASALKAKNAVKYSP--QARSIDVETTAYALLAYLLLAQVD--YALPIVRWLVEQRNA 1190 (1436)
T ss_pred eeeeeccccccCcccCCC--ccchhhccchHHHHHHHHHhcccC--cCchhHhhhhhhhcc
Confidence 2433322221111 222 2233 4677999999998876644 677788999988764
No 64
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=97.55 E-value=0.009 Score=65.92 Aligned_cols=257 Identities=14% Similarity=0.154 Sum_probs=131.9
Q ss_pred CCCcc--hHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccc-cCCCCCCCCCCccCCCCCCCchhhHHH
Q 012325 159 GSQLW--DTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFW-YRHISKGAWPFSTADHGWPISDCTSEG 235 (466)
Q Consensus 159 ~s~vw--DTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~-~~~~~~GGW~f~~~~~~~pd~D~Ta~a 235 (466)
..-+| |++++++||..+|.++ ..++.++||.+.|..+ |.|-.. +.+..+..|.. -.-.|.|+.+
T Consensus 292 Y~y~W~RD~~~~a~Al~~~G~~~----~a~~~l~~l~~~q~~~---G~~~~~~~~dG~~~~~~~------~~Q~D~~g~~ 358 (616)
T TIGR01577 292 YAYCWGRDASYIATALDRAGYHD----RVDRFFRWAMQTQSRD---GSWQQRYYLNGRLAPLQW------GLQIDETGSI 358 (616)
T ss_pred CceeccccHHHHHHHHHHCCCHH----HHHHHHHHHHHhhCcC---CCcceEEecCCCCCCCCC------CccccchhHH
Confidence 34466 8999999999999754 4788899999999986 666332 33221111111 1346779998
Q ss_pred HHHhHhhhcccccccCCcc---chHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHH
Q 012325 236 LKASLLLSKLSSAIVGEPI---ETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSA 312 (466)
Q Consensus 236 l~aL~~~~~~~~~~~g~~~---~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~ 312 (466)
|.++........ .... .-+.++++++|+.....+++.-..+ ..|-+. .| .++...+.
T Consensus 359 l~al~~y~~~t~---d~~~~~~~~~~v~~a~~fl~~~~~~~l~~~~~-----~lWEer------~G------~~~~t~a~ 418 (616)
T TIGR01577 359 LWAMDQHYRLTN---DRAFLEEIWESVQKAAQYLILFIDPETPLPCR-----DLWEER------EG------VFTYTASA 418 (616)
T ss_pred HHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-----ccceec------CC------ccCccHHH
Confidence 888754322110 0111 1356899999999876443111100 011110 01 12344555
Q ss_pred HHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHH-----hcccCCCcccc-CCC---cccchHHHHHHHHH-HccCCCCCc
Q 012325 313 SIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEK-----IQELDGSWYGS-WGV---CFTYGTWFGVKGLV-AAGMNYSNS 382 (466)
Q Consensus 313 vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~-----~Q~~DG~W~g~-wg~---~~~Y~T~~al~aL~-~~g~~~~~~ 382 (466)
+..||..+.+.......++.....++..+.|++ .-.++++++-+ .+. ..+-.+ .+.+|. ..|.-...+
T Consensus 419 ~~aAL~~aa~lA~~lGd~~~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~~~~~~~~vDa--SlL~l~~~~g~l~~~D 496 (616)
T TIGR01577 419 VYGGLDAAAAVADKLGEKRLAQNWKKAAEFIKRAVEERFWLPERQVFAKGIKLMVLDKTIDI--SILGISVPFNLIAPDD 496 (616)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeecCCCCCCcccH--HHHhHHHhcCCCCCCC
Confidence 555555542211000001111223334444443 23455555432 110 111112 244453 366544577
Q ss_pred HHHHHHHHHHHhccCC--CCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCch-----------hHHHHH
Q 012325 383 SSIRKACEFLLSKQRP--SGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRIN-----------CCCSTL 449 (466)
Q Consensus 383 ~~i~ra~~~Ll~~Q~~--DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~-----------~i~rgv 449 (466)
+.+...++-+.+.-.. +|||.- |....|.+ | .+=...|.|...+++.+|....+ ..++-+
T Consensus 497 pr~v~Tv~~I~~~L~~~~~ggi~R----Y~~D~y~~--g-~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll 569 (616)
T TIGR01577 497 ERMVKMAEAIEKHLTSPIVGGIKR----YENDPYVG--G-NPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLL 569 (616)
T ss_pred hHHHHHHHHHHHHhcccCCCeeeC----CCCCCCCC--C-CcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHH
Confidence 8877766666654332 567642 22223432 2 33357899999999988875421 344455
Q ss_pred HHHHhccC
Q 012325 450 KVTLSLER 457 (466)
Q Consensus 450 ~~L~~~q~ 457 (466)
+|+++...
T Consensus 570 ~~~~~~~~ 577 (616)
T TIGR01577 570 KWVMDHRT 577 (616)
T ss_pred HHHHhcCC
Confidence 56665543
No 65
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=97.17 E-value=0.0048 Score=61.93 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=90.0
Q ss_pred CCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHh
Q 012325 160 SQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKAS 239 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL 239 (466)
+..+.=++.++||+-.+-. -....+.+++...+.. - + .|++ -++|.+|+|++||
T Consensus 143 TnyYq~sL~vLALCv~~~~----~~~~~v~kL~~~~~~~-~--------~----~~~~---------~sVDT~AmA~LAL 196 (326)
T PF01122_consen 143 TNYYQYSLGVLALCVHNKR----VSLSVVAKLLKAENHN-F--------Y----HGSQ---------FSVDTGAMAVLAL 196 (326)
T ss_dssp SGHHHHHHHHHHHHHTTHH----HHHHHHHHHHHHHHSS-T--------S----S-ST---------CHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHccCCC----cCHHHHHHHHHHHHhh-c--------c----cCCC---------CCccHHHHHHHHH
Confidence 4568899999999987642 2233334444443321 0 0 0211 2689999999999
Q ss_pred Hhhhcccccc-cCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHH
Q 012325 240 LLLSKLSSAI-VGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALT 318 (466)
Q Consensus 240 ~~~~~~~~~~-~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~ 318 (466)
..+.+..... .....-...|++.++.|++.|.+||.|| + ++.|+.+++||.
T Consensus 197 tCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G---------------------N-------iySTglAmQAL~ 248 (326)
T PF01122_consen 197 TCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG---------------------N-------IYSTGLAMQALS 248 (326)
T ss_dssp HHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS---------------------S-------TTTHHHHHHHHT
T ss_pred HHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc---------------------c-------hhhHHHHHHHHh
Confidence 8876533210 0001124567777788899999999874 2 678999999999
Q ss_pred hhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHH
Q 012325 319 SFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLV 373 (466)
Q Consensus 319 ~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~ 373 (466)
..+.. +. +-.-...++.+.|++.. ++|.|.. .-.++.+|-+|.
T Consensus 249 ~~~~~-~~----~~~w~C~k~~~~ll~~i-~~G~F~n------P~a~aQiLPaL~ 291 (326)
T PF01122_consen 249 VSPSP-PS----ESEWNCQKALDALLKEI-SQGAFQN------PMAIAQILPALN 291 (326)
T ss_dssp T-SS--SS----HHHHHHHHHHHHHHHHH-TTTTT-S------HHHHHHHHHHHT
T ss_pred cCCCC-Cc----chhhHHHHHHHHHHHHh-hcCCCCC------HHHHHHHHHHHc
Confidence 98653 11 11346889999999864 5998853 224555555554
No 66
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.06 E-value=0.015 Score=59.07 Aligned_cols=229 Identities=17% Similarity=0.158 Sum_probs=121.6
Q ss_pred chhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCc-cch
Q 012325 178 VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEP-IET 256 (466)
Q Consensus 178 ~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~-~~~ 256 (466)
.+++.+.+.++.+|++..+.+. .. ||......+...--+|.--+++..|..+.... |++ ..+
T Consensus 85 d~~y~~~~~~~a~~~l~~~~~~-~~------------G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~t----gd~~~~~ 147 (336)
T PF07470_consen 85 DEKYKDAAIQAADWLLARRPRT-SD------------GGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLT----GDPKYLD 147 (336)
T ss_dssp THHHHHHHHHHHHHHHHTSCBE-CT------------GCBECTTTSTTEEETTHHHHHHHHHHHHHHHH----TGHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCC-CC------------CccccCCCCCCceeeccccccHHHHHHHHHHH----CCcHHHH
Confidence 4567889999999999887763 11 44433222222223566656777666655422 111 223
Q ss_pred HHHHHHHHHHHhhccC-CCceec-cccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCC--chhhh
Q 012325 257 KRLYDSVNVIFSLQNA-DGGFAT-YELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGH--WQEDV 332 (466)
Q Consensus 257 ~~i~~av~~Ll~~Qn~-dGgw~~-~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~--~~~~i 332 (466)
+++.....+...+.++ +|-|-- +...... ..++ ... .-..+-++.+|..+-+..|.. ..+.+
T Consensus 148 ~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~----------~~s~--~~W--sRG~gW~~~Gl~~~l~~lp~~~~~~~~~ 213 (336)
T PF07470_consen 148 EAVRQFRLTRKYLYDPETGLYYHGYTYQGYA----------DWSD--SFW--SRGNGWAIYGLAEVLEYLPEDHPERDEL 213 (336)
T ss_dssp HHHHHHHHHHHHHB-TTTSSBESEEETTSSS----------TTST----B--HHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCceeeccCCCCCc----------Cccc--ccC--cchhhHHHHHHHHHHHHhcchhhhHHHH
Confidence 4444455555555655 454421 1100000 0001 000 113344566665543322221 12456
Q ss_pred HHHHHHHHHHHHHhcccCCCccccCC--C--c--ccchHHHHHHHHHH---ccCC--CCCcHHHHHHHHHHHhc-cCCCC
Q 012325 333 DHCIKRAVKFIEKIQELDGSWYGSWG--V--C--FTYGTWFGVKGLVA---AGMN--YSNSSSIRKACEFLLSK-QRPSG 400 (466)
Q Consensus 333 ~~~i~ra~~~L~~~Q~~DG~W~g~wg--~--~--~~Y~T~~al~aL~~---~g~~--~~~~~~i~ra~~~Ll~~-Q~~DG 400 (466)
....++.++.|.+.|.+||.|+-..- . + .+-+|+.+..||.. .|.. ....+.++|+.+.|+++ -++||
T Consensus 214 ~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG 293 (336)
T PF07470_consen 214 LEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDG 293 (336)
T ss_dssp HHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTS
T ss_pred HHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCC
Confidence 67788888999999999999964321 1 2 24467877777743 3433 12346788999999999 77888
Q ss_pred C--CCCcccccccccccCCCCCCCchhHHHHHHHHHHHc
Q 012325 401 G--WGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDA 437 (466)
Q Consensus 401 g--Wge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~a 437 (466)
. +...+....-..|.+.+.....+.-.++-|+|+++.
T Consensus 294 ~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~ 332 (336)
T PF07470_consen 294 KLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEY 332 (336)
T ss_dssp SSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHH
T ss_pred CeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 6 555443332111222111123356788888888764
No 67
>PLN02279 ent-kaur-16-ene synthase
Probab=97.04 E-value=0.011 Score=66.47 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcccC-CCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHh
Q 012325 336 IKRAVKFIEKIQELD-GSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLS 394 (466)
Q Consensus 336 i~ra~~~L~~~Q~~D-G~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~ 394 (466)
-.++++||.+.++.- |+-+..+.+. .+...+.+..|...|..+.-.+.|+..++.+.+
T Consensus 244 ~~~~~~yL~~~~~~~~g~vP~~yp~~-~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~ 302 (784)
T PLN02279 244 NAGCLRYLRSLLQKFGNAVPTVYPLD-QYARLSMVDTLERLGIDRHFRKEIKSVLDETYR 302 (784)
T ss_pred ChHHHHHHHHHHHhcCCCCCCCCccc-HHHHhHHHHHHHHhCCccccHHHHHHHHHHHHH
Confidence 367889998876554 4444444443 367889999999999997778899999888865
No 68
>PLN02592 ent-copalyl diphosphate synthase
Probab=96.87 E-value=0.0035 Score=70.08 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=58.2
Q ss_pred CcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcC
Q 012325 359 VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAG 438 (466)
Q Consensus 359 ~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag 438 (466)
.+..|.|||+ ||...-.. ...|..-..++||++.|.+|||||.... +. ..-...+|.-+|+||..-.
T Consensus 94 S~S~YDTAWV--AmVp~~~g-~~~p~FP~~~~wIl~nQ~~DGsWG~~~~------~~----~~D~ll~TLAcvlAL~~w~ 160 (800)
T PLN02592 94 SISAYDTAWV--ALVEDING-SGTPQFPSSLQWIANNQLSDGSWGDAYL------FS----AHDRLINTLACVVALKSWN 160 (800)
T ss_pred CCcHHHhHHH--hhcccCCC-CCCCCCHHHHHHHHHccCCCCCCCCCCC------cc----hHHHHHhHHHHHHHHHHhh
Confidence 4678999994 34432111 2346667899999999999999997421 00 0123689999999998743
Q ss_pred CCCchhHHHHHHHHHhcc
Q 012325 439 QVRINCCCSTLKVTLSLE 456 (466)
Q Consensus 439 ~~~~~~i~rgv~~L~~~q 456 (466)
. .++.|+||+.||.+.-
T Consensus 161 ~-~~~~i~rGl~fi~~nl 177 (800)
T PLN02592 161 L-HPEKCEKGMSFFRENI 177 (800)
T ss_pred c-cHHHHHHHHHHHHHHH
Confidence 2 3466999999997654
No 69
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.019 Score=68.14 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=43.2
Q ss_pred CCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHcc
Q 012325 307 VECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAG 376 (466)
Q Consensus 307 ~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g 376 (466)
++.|+++|.++....+.. .+.-.++||.++++..|||.. +..|..|+.||....
T Consensus 1158 VE~tsYaLL~~~~~~~~~----------~~~pivrWl~~qr~~~GGf~S------TQdTvvalqaLs~y~ 1211 (1436)
T KOG1366|consen 1158 VETTAYALLAYLLLAQVD----------YALPIVRWLVEQRNALGGFSS------TQDTVVALQALSEYA 1211 (1436)
T ss_pred ccchHHHHHHHHHhcccC----------cCchhHhhhhhhhcccCceee------hHHHHHHHHHHHHhh
Confidence 789999999888875431 244457899999999999974 788999999998754
No 70
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=96.31 E-value=0.44 Score=48.94 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=65.5
Q ss_pred CCCcchHHHHHHHHHhcC---CchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCC-----CCCch
Q 012325 159 GSQLWDTAFAVQAIISTN---LVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHG-----WPISD 230 (466)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag---~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~-----~pd~D 230 (466)
...+|.+++++.+++.+. -.++..+..+++++||.+.-... . .|||-+.....+ -++..
T Consensus 49 ~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~--~-----------~Gg~~~~~~~~g~~~~~~~~l~ 115 (384)
T cd00249 49 DRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDP--D-----------HGGWYFALDQDGRPVDATKDLY 115 (384)
T ss_pred CCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCC--C-----------CCCEEEEEcCCCCCcccccchH
Confidence 456899999999998752 23456778899999999864432 1 144433332111 13678
Q ss_pred hhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhc-cCCCce
Q 012325 231 CTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQ-NADGGF 276 (466)
Q Consensus 231 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Q-n~dGgw 276 (466)
+-+.++.||..+.+.. +.+...+...+.+++|.+.. ..+|++
T Consensus 116 ~~a~~l~ala~~~~at----~d~~~l~~A~~~~~~l~~~~~~~~g~~ 158 (384)
T cd00249 116 SHAFALLAAAQAAKVG----GDPEARALAEETIDLLERRFWEDHPGA 158 (384)
T ss_pred HHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 8899999988775432 23334567777888887765 346766
No 71
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=95.97 E-value=0.77 Score=47.18 Aligned_cols=237 Identities=11% Similarity=0.021 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCC-----CCchhhHHHHHHhHhhhcccccccCCccchH
Q 012325 183 ATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGW-----PISDCTSEGLKASLLLSKLSSAIVGEPIETK 257 (466)
Q Consensus 183 ~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~-----pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~ 257 (466)
..++.++.|........ .. ||+.......+. ..+..+|.+|.++..+... .+.+...+
T Consensus 14 ~~~~~~~~fw~~~~~d~-~~------------gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~----~~~~~~l~ 76 (384)
T cd00249 14 WLLEDLLPFWLEAGLDR-EA------------GGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLL----GWRPEWLE 76 (384)
T ss_pred HHHHHHHHHHHhcCCCC-CC------------CCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHh----cCChhHHH
Confidence 34577888888765432 12 555443222222 3456789999988776542 12333356
Q ss_pred HHHHHHHHHHh-hccCC-CceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHH
Q 012325 258 RLYDSVNVIFS-LQNAD-GGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHC 335 (466)
Q Consensus 258 ~i~~av~~Ll~-~Qn~d-Ggw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~ 335 (466)
...+++++|.+ +..++ |||-. ..+++ |.......+.+.-+++|.||+.+..... .++....
T Consensus 77 ~A~~~~~fl~~~~~d~~~Gg~~~-~~~~~-------------g~~~~~~~~l~~~a~~l~ala~~~~at~---d~~~l~~ 139 (384)
T cd00249 77 AAEHGLEYLDRHGRDPDHGGWYF-ALDQD-------------GRPVDATKDLYSHAFALLAAAQAAKVGG---DPEARAL 139 (384)
T ss_pred HHHHHHHHHHHhCcCCCCCCEEE-EEcCC-------------CCCcccccchHHHHHHHHHHHHHHHhcC---CHHHHHH
Confidence 78899999987 44556 99953 11110 1111111235567889999988765432 2445678
Q ss_pred HHHHHHHHHHhcc-cCCCccccC----CC-cccchHHHHHHHHHHccC---CCCCcHHHHHHHHHHHhc--cCCCCCCCC
Q 012325 336 IKRAVKFIEKIQE-LDGSWYGSW----GV-CFTYGTWFGVKGLVAAGM---NYSNSSSIRKACEFLLSK--QRPSGGWGE 404 (466)
Q Consensus 336 i~ra~~~L~~~Q~-~DG~W~g~w----g~-~~~Y~T~~al~aL~~~g~---~~~~~~~i~ra~~~Ll~~--Q~~DGgWge 404 (466)
+++.+++|.+... ++|+++... .. .-....+..+.+|..+.. +....+.+++.++.+... +.++|++-+
T Consensus 140 A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e 219 (384)
T cd00249 140 AEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFIDAESGVVRE 219 (384)
T ss_pred HHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcccCeEEE
Confidence 8889999988874 456554211 10 112223322333333222 101223444455555554 244676644
Q ss_pred cccccccc--cccCCCCCCCchhHHHHHHHHHHHcCCCCch---hHHHHHHHHHh
Q 012325 405 SYLSCQKK--VYSNLEGDRSHVVNTAWAMLALIDAGQVRIN---CCCSTLKVTLS 454 (466)
Q Consensus 405 ~~~s~~~~--~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~---~i~rgv~~L~~ 454 (466)
........ .-.+..-.++.....+|+|+.|..... +.+ .+++.++++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~-~~~~~~~a~~~~~~~~~ 273 (384)
T cd00249 220 HFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSG-QAWLIEKARRLFDLALA 273 (384)
T ss_pred EECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHH
Confidence 32110000 000000013445667888888876532 222 34444444443
No 72
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.92 E-value=0.63 Score=47.22 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCc-hhhhHH
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHW-QEDVDH 334 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~-~~~i~~ 334 (466)
.+.+++.++.|...|++||.|... +.+-. ..+..|.++.++.+.+.+........ .+++.+
T Consensus 214 ~~~~~~~~~~l~~~q~~~G~w~~~-----------------~~~~~-~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~ 275 (336)
T PF07470_consen 214 LEIAKKLADALARYQDEDGLWYQD-----------------LDDPD-PGNYRETSATAMFAYGLLRGIRLGLLDPEEYRP 275 (336)
T ss_dssp HHHHHHHHHHHHTTSTTTSBEBSB-----------------TTTTT-TTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCccee-----------------cCCCC-CCCcccHHHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 455677778899999999999531 11111 11335666666665555431111222 466788
Q ss_pred HHHHHHHHHHHh-cccCCC--ccccC---C----------CcccchHHHHHHHHHHc
Q 012325 335 CIKRAVKFIEKI-QELDGS--WYGSW---G----------VCFTYGTWFGVKGLVAA 375 (466)
Q Consensus 335 ~i~ra~~~L~~~-Q~~DG~--W~g~w---g----------~~~~Y~T~~al~aL~~~ 375 (466)
.++|+++.|.+. -++||. +.+.- + .+..||.++.|.|+...
T Consensus 276 ~a~~a~~~l~~~~~~~dG~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~ 332 (336)
T PF07470_consen 276 AAEKALEALLSNAIDPDGKLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEY 332 (336)
T ss_dssp HHHHHHHHHHHCEB-TTSSSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCCCCCeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 999999999999 788887 53311 1 11247888888888764
No 73
>PLN02279 ent-kaur-16-ene synthase
Probab=95.76 E-value=0.013 Score=65.83 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=56.7
Q ss_pred CcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcC
Q 012325 359 VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAG 438 (466)
Q Consensus 359 ~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag 438 (466)
.+..|.|||+. |...-.. ...|.--..++||++.|.+||+||....+. +. ..-...+|.-+|+||..=+
T Consensus 52 s~s~YDTAWva--mv~~~~~-~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~----~~----~~D~ll~TlAcvlAL~~w~ 120 (784)
T PLN02279 52 SVSSYDTAWVA--MVPSPNS-QQAPLFPECVKWLLENQLEDGSWGLPHDHP----LL----VKDALSSTLASILALKKWG 120 (784)
T ss_pred CCchhhhHHHH--hcccCCC-CCCCCChHHHHHHHhcCCCCCCCCCCCCCc----ch----hHHhhHHHHHHHHHHHHHh
Confidence 46789999964 3332111 234667789999999999999999741110 00 0112579999999998744
Q ss_pred CCCchhHHHHHHHHHh
Q 012325 439 QVRINCCCSTLKVTLS 454 (466)
Q Consensus 439 ~~~~~~i~rgv~~L~~ 454 (466)
. .++.+++|+.|+.+
T Consensus 121 ~-~~~~~~~gl~fi~~ 135 (784)
T PLN02279 121 V-GEEQINKGLQFIEL 135 (784)
T ss_pred c-CcccchhhHHHHHH
Confidence 3 34558999999864
No 74
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=95.59 E-value=0.41 Score=52.95 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=59.7
Q ss_pred chHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCccccc-CCCCCCCCCCccCCCCCCCchhhHHHHHHhHh
Q 012325 163 WDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWY-RHISKGAWPFSTADHGWPISDCTSEGLKASLL 241 (466)
Q Consensus 163 wDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~-~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~ 241 (466)
-|.++++.||..+|.. +..++.++||.+.|..+ |.|-..| .+.. -+|. . --.|.||+.|.++..
T Consensus 298 RD~a~~a~AL~~~G~~----~~a~~~~~~l~~~~~~~---G~~lq~y~vdG~-~~~~---~----iQlD~~g~~i~~~~~ 362 (648)
T TIGR01535 298 RDLYQVANAFLAAGDV----DSALRSLDYLAKVQQDN---GMFPQNSWVDGK-PYWT---G----IQLDETAFPILLAYR 362 (648)
T ss_pred hhHHHHHHHHHHCCCH----HHHHHHHHHHHHHhccC---CCcCceeccCCC-CCCC---C----ccccHHHHHHHHHHH
Confidence 4899999999999975 45789999999999975 5653222 2211 1121 1 136999999988766
Q ss_pred hhcccccccCCccchHHHHHHHHHHHhh
Q 012325 242 LSKLSSAIVGEPIETKRLYDSVNVIFSL 269 (466)
Q Consensus 242 ~~~~~~~~~g~~~~~~~i~~av~~Ll~~ 269 (466)
+.+. +.....+.++++++||...
T Consensus 363 l~~~-----~~~~~~~~vk~aadfl~~~ 385 (648)
T TIGR01535 363 LHRY-----DHAFYDKMLKPAADFIVKN 385 (648)
T ss_pred HHHc-----CcHHHHHHHHHHHHHHHHc
Confidence 5432 1122346799999999984
No 75
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=95.37 E-value=0.11 Score=57.54 Aligned_cols=120 Identities=19% Similarity=0.168 Sum_probs=75.9
Q ss_pred hhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceec-cccccccccccccCcccccCCcccc-CCCC
Q 012325 230 DCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFAT-YELMRSYPWLEVLNPAETFGDIVID-YPCV 307 (466)
Q Consensus 230 D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~-~~~~~~~~~l~~~~~~e~fg~~~~d-~~~~ 307 (466)
=|++.+++||..++ ..+..++.++||.+.|.+||+|.. |..+... .. .+ ....
T Consensus 298 RD~~~~a~Al~~~G-----------~~~~a~~~l~~l~~~q~~~G~~~~~~~~dG~~-----------~~---~~~~~Q~ 352 (616)
T TIGR01577 298 RDASYIATALDRAG-----------YHDRVDRFFRWAMQTQSRDGSWQQRYYLNGRL-----------AP---LQWGLQI 352 (616)
T ss_pred ccHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhhCcCCCcceEEecCCCC-----------CC---CCCCccc
Confidence 46888888887764 257788999999999999999842 1111100 00 11 2335
Q ss_pred CcHHHHHHHHHhhhhhCCC-CchhhhHHHHHHHHHHHHHhcc------cCCCccccCCCcccchHHHHHHHHHHc
Q 012325 308 ECTSASIQALTSFKKLYPG-HWQEDVDHCIKRAVKFIEKIQE------LDGSWYGSWGVCFTYGTWFGVKGLVAA 375 (466)
Q Consensus 308 ~~Ta~vl~aL~~~~~~~~~-~~~~~i~~~i~ra~~~L~~~Q~------~DG~W~g~wg~~~~Y~T~~al~aL~~~ 375 (466)
|.++.+|-++..+.....+ .-.+++-+.|+++++|+.+... ..|-|..+.|. ++|..+.+..||..+
T Consensus 353 D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~~l~~~~~~lWEer~G~-~~~t~a~~~aAL~~a 426 (616)
T TIGR01577 353 DETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDPETPLPCRDLWEEREGV-FTYTASAVYGGLDAA 426 (616)
T ss_pred cchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccceecCCc-cCccHHHHHHHHHHH
Confidence 6788888877654322111 1113445789999999998652 23557666554 677777777777654
No 76
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=95.09 E-value=0.17 Score=55.83 Aligned_cols=115 Identities=18% Similarity=0.112 Sum_probs=75.3
Q ss_pred hhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceec-cccccccccccccCcccccCCccccCCCCC
Q 012325 230 DCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFAT-YELMRSYPWLEVLNPAETFGDIVIDYPCVE 308 (466)
Q Consensus 230 D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~-~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~ 308 (466)
=|.+.+++||..++ ..+..++.++||.+.|.++|.|.- |..+....|. .-..|
T Consensus 298 RD~a~~a~AL~~~G-----------~~~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~---------------~iQlD 351 (648)
T TIGR01535 298 RDLYQVANAFLAAG-----------DVDSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWT---------------GIQLD 351 (648)
T ss_pred hhHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHhccCCCcCceeccCCCCCCC---------------Ccccc
Confidence 46788888888765 356788999999999999998831 2222222111 12267
Q ss_pred cHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcc-c-CCCccccCCCcccchHHHHHHHHHHc
Q 012325 309 CTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQE-L-DGSWYGSWGVCFTYGTWFGVKGLVAA 375 (466)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~-~-DG~W~g~wg~~~~Y~T~~al~aL~~~ 375 (466)
.|+.+|.++-.+.+... ..+.+.|+++++||.+.-. + -|-|-++-|. ..|..+.++.||.++
T Consensus 352 ~~g~~i~~~~~l~~~~~----~~~~~~vk~aadfl~~~~p~p~~d~WEer~g~-~~~T~a~v~aaL~~A 415 (648)
T TIGR01535 352 ETAFPILLAYRLHRYDH----AFYDKMLKPAADFIVKNGPKTGQERWEEIGGY-SPSTLAAEIAGLTAA 415 (648)
T ss_pred HHHHHHHHHHHHHHcCc----HHHHHHHHHHHHHHHHcCCCCCCCcccccCCc-CchhHHHHHHHHHHH
Confidence 89999887765543211 3345789999999998742 2 3677665554 345555566777664
No 77
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=93.44 E-value=2.5 Score=42.60 Aligned_cols=213 Identities=14% Similarity=0.123 Sum_probs=101.4
Q ss_pred hhHHHhhhhcc--ccCCCcHHHHHHHHhhhcceeee----CCCce-eecCCCCCcchHHHHHHH--HHhc----CCchhh
Q 012325 115 VNKVLNMLCCW--VEDPNSEAFKLHIPRINDYLWIA----EDGMK-VQGYNGSQLWDTAFAVQA--IIST----NLVEEY 181 (466)
Q Consensus 115 v~~~l~~l~~~--~~~p~~~~~~~~~~~l~~~~~~~----~~G~~-~q~~~~s~vwDTa~a~~A--L~~a----g~~~~~ 181 (466)
|+.+.+.+.+. .+.-.+|.+.++...+.+++... ++|++ ... +..|+|+-++-+-. +++. |-++-+
T Consensus 79 id~i~~g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~-~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~ 157 (357)
T COG4225 79 IDHIAAGLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVK-YPHQMWLDTLYMAGLFLAKYGQVTGRPEYF 157 (357)
T ss_pred hhhhccCceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccC-chhHhhhcchhhhhHHHHHHHHHhCCHHHH
Confidence 45544444442 23456677777777776665543 34432 333 47899986653322 2332 333333
Q ss_pred HHHHHHHHHHHHhccccCCCC-CCcccccCCCCCCCCCCccCC--CCC--CCchhhHHHHHHhHhhhcccccccCCccch
Q 012325 182 GATLKKAHKYIKDSQVLEDCP-GNLDFWYRHISKGAWPFSTAD--HGW--PISDCTSEGLKASLLLSKLSSAIVGEPIET 256 (466)
Q Consensus 182 ~~~l~~a~~wL~~~Q~~~~~~-Gdw~~~~~~~~~GGW~f~~~~--~~~--pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~ 256 (466)
++.+. +|.+-.+...++. |=|-..+-....+-|.-...+ ..| .....+.....+|-.+-...+ ....-.
T Consensus 158 d~~~~---QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~---~r~~l~ 231 (357)
T COG4225 158 DEALY---QFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHP---DRRELL 231 (357)
T ss_pred HHHHH---HHHHHHHHccCCCcCceEEeeccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCc---hHHHHH
Confidence 44443 3555544443322 322211111112223222211 111 111222222222222211111 112235
Q ss_pred HHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHH
Q 012325 257 KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336 (466)
Q Consensus 257 ~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i 336 (466)
+.+++-++-|..+|..+|=|-.--. +- --.++++.+|.++-+.+.+....-.+-.++..+.+
T Consensus 232 ~~l~d~v~al~r~Qde~GlW~tiLD-----------------d~-~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~ 293 (357)
T COG4225 232 NVLRDLVDALIRYQDESGLWHTILD-----------------DG-RPGSYLESSASAGFAYALLKGINLGILDPEYAPVA 293 (357)
T ss_pred HHHHHHHHHHHHhhccccchhhhhc-----------------cC-CCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence 6788889999999999999943100 00 01144566666665555443211122223335799
Q ss_pred HHHHHHHHHhcccCCC
Q 012325 337 KRAVKFIEKIQELDGS 352 (466)
Q Consensus 337 ~ra~~~L~~~Q~~DG~ 352 (466)
+||++=|+.+-.++|-
T Consensus 294 ~kA~~aLl~~i~~~g~ 309 (357)
T COG4225 294 EKALDALLGHIDEEGE 309 (357)
T ss_pred HHHHHHHHhhcccccc
Confidence 9999999998877763
No 78
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=91.17 E-value=8.1 Score=41.84 Aligned_cols=144 Identities=15% Similarity=0.167 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhccccCCCCCCcc----cccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchH
Q 012325 182 GATLKKAHKYIKDSQVLEDCPGNLD----FWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETK 257 (466)
Q Consensus 182 ~~~l~~a~~wL~~~Q~~~~~~Gdw~----~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~ 257 (466)
.+..+...++++..|.... ...++ ........|||.-......+.+. +++.-|.|+..+... .+++.-.+
T Consensus 10 ~~~~~~~~~~~l~~~~d~l-l~~~r~~agl~~~~~~~g~we~~~~~~~~~~~-~~g~wl~a~a~~~~~----~~D~~l~~ 83 (520)
T PF07944_consen 10 KRRQELNRAYLLPLDPDRL-LYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGH-DVGKWLEAAAYAYAY----TGDPELKA 83 (520)
T ss_pred HHHHHHHHHHHHHhHHHHH-hhhcCcccCCCCccccCCCCccCCCCCccCCC-cHHHHHHHHHHHHHH----CCCHHHHH
Confidence 4556666777776664321 00111 11123356888722222222222 455666665443221 12233467
Q ss_pred HHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHH
Q 012325 258 RLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIK 337 (466)
Q Consensus 258 ~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ 337 (466)
.+++.|+.|+++|.+||-.++|.... ..++.+.+.+ +.-..++..+++++|........+ +++-+++.
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~~~~~------~~~~~~~w~~---~~he~Y~~~~ll~gl~~~y~~tG~---~~~L~v~~ 151 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTYPEER------NFNPDDRWAP---DMHELYCLGKLLEGLIDYYEATGN---ERALDVAT 151 (520)
T ss_pred HHHHHHHHHHHhccCCceeccccccc------ccccccCCCC---CccceehHhHHHHHHHHHHHHHCc---HHHHHHHH
Confidence 89999999999999999998876433 0111112222 111256778899988876543221 34557888
Q ss_pred HHHHHH
Q 012325 338 RAVKFI 343 (466)
Q Consensus 338 ra~~~L 343 (466)
|.++|+
T Consensus 152 k~ad~~ 157 (520)
T PF07944_consen 152 KLADWV 157 (520)
T ss_pred HHHHHH
Confidence 999999
No 79
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.39 E-value=23 Score=36.58 Aligned_cols=225 Identities=17% Similarity=0.198 Sum_probs=120.0
Q ss_pred CCcchHHHHHHHHHhcC------CchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhH
Q 012325 160 SQLWDTAFAVQAIISTN------LVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTS 233 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag------~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta 233 (466)
-.+=|.|...+||..+. ++ ...-++-++||.+.-..+. .+.-|-|+. +
T Consensus 106 Q~~VEaa~la~aL~~a~~~lW~~L~---~~~k~~l~~wL~~~~~~~~------------~~nNW~lF~-----------v 159 (361)
T PF10022_consen 106 QRLVEAASLALALLRAPEWLWDPLD---EEEKENLVDWLKQIRGIKP------------PDNNWLLFR-----------V 159 (361)
T ss_pred hhHhHHHHHHHHHHHCHHHHHhhCC---HHHHHHHHHHHHhcCcCCC------------ccchhHHHH-----------H
Confidence 45678999999999874 22 2445667889986544331 224555542 3
Q ss_pred HHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHH
Q 012325 234 EGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSAS 313 (466)
Q Consensus 234 ~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~v 313 (466)
.+..+|..+ |.+.+.+.++.+++-+.++--.||=++ + .. .-..|| -.+.+
T Consensus 160 ~v~~~L~~~--------G~~~d~~~i~~~l~~~e~~Y~GdGWY~--D-G~---------------~~~~DY----Yns~a 209 (361)
T PF10022_consen 160 MVEAFLKKV--------GEEYDEERIDYDLERIEEWYLGDGWYS--D-GP---------------EFQFDY----YNSWA 209 (361)
T ss_pred HHHHHHHHc--------CCCCcHHHHHHHHHHHHHHhccCCccc--c-CC---------------ccCCcc----hHHHH
Confidence 344455443 445678999999999999876665332 1 00 012454 23555
Q ss_pred HHHHHhh-hhhCCCCchhhhHHHHHHHHHHHHHh---cccCCCccccCCCcccc--hHHHHHHHHHHccC--CCC-CcHH
Q 012325 314 IQALTSF-KKLYPGHWQEDVDHCIKRAVKFIEKI---QELDGSWYGSWGVCFTY--GTWFGVKGLVAAGM--NYS-NSSS 384 (466)
Q Consensus 314 l~aL~~~-~~~~~~~~~~~i~~~i~ra~~~L~~~---Q~~DG~W~g~wg~~~~Y--~T~~al~aL~~~g~--~~~-~~~~ 384 (466)
+.-+... -+..++...+..+...+|+.+|.... -.+||+.. -+|-+-+| ++...+.++..++. ... ....
T Consensus 210 ih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~-~~GRSltYRfA~~a~~~~~a~~~~lp~~~~~~g~ 288 (361)
T PF10022_consen 210 IHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAP-PFGRSLTYRFAAFAFLAAAALAGVLPEPLISPGQ 288 (361)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcC-CccccHHHHHHHHHHHHHHHHcCCCCccCCCHHH
Confidence 5544332 11222222223456778888887764 45888765 45666666 34444445555555 112 2344
Q ss_pred HHHH----HHHHHhc-cCCCC-CCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchh
Q 012325 385 IRKA----CEFLLSK-QRPSG-GWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINC 444 (466)
Q Consensus 385 i~ra----~~~Ll~~-Q~~DG-gWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~ 444 (466)
++++ ++|..+. ..-|. ||-.-...+.+... ...-+.+.+--||+.+++..+.+++++
T Consensus 289 vR~~l~~~lr~~~~~p~~f~~~G~LtiG~~~~~~~m---~e~Y~~~gSpYwa~k~Fl~L~Lp~dhp 351 (361)
T PF10022_consen 289 VRRALSRVLRWWLEQPGIFDEDGWLTIGFYGPNPPM---AENYNSPGSPYWASKAFLPLGLPADHP 351 (361)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcCCCcCCCChhh---hhccCCCCCHHHHHHHHHHhcCCCCCc
Confidence 5554 4444443 22222 33222222222110 011233445578888888887776654
No 80
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=86.98 E-value=38 Score=34.44 Aligned_cols=228 Identities=14% Similarity=0.096 Sum_probs=116.2
Q ss_pred hhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCC--chhhH-HHHHHhHhhhcccccccCCccc
Q 012325 179 EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPI--SDCTS-EGLKASLLLSKLSSAIVGEPIE 255 (466)
Q Consensus 179 ~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd--~D~Ta-~al~aL~~~~~~~~~~~g~~~~ 255 (466)
+++.+...+..+||...- +.. .||+-.-.. ||. -+||= ++..-++.+++.- + .
T Consensus 98 ~~Yl~~a~~~a~~l~~~~-Rt~-------------eG~f~H~~~---~p~Q~W~DtL~Ma~~F~ak~g~~~----~---~ 153 (357)
T COG4225 98 PRYLEAAIKLASWLVHEP-RTK-------------EGGFQHKVK---YPHQMWLDTLYMAGLFLAKYGQVT----G---R 153 (357)
T ss_pred HHHHHHHHHHHHHHhhCc-ccC-------------CCccccccC---chhHhhhcchhhhhHHHHHHHHHh----C---C
Confidence 457788888899998775 321 244332222 222 22332 3333344444321 1 1
Q ss_pred hHHHHHHH----HHHHhhccCCCceec--cccccccccccccCcc-cccCCccccCCCCCcHHHHHHHHHhhhhhCCCCc
Q 012325 256 TKRLYDSV----NVIFSLQNADGGFAT--YELMRSYPWLEVLNPA-ETFGDIVIDYPCVECTSASIQALTSFKKLYPGHW 328 (466)
Q Consensus 256 ~~~i~~av----~~Ll~~Qn~dGgw~~--~~~~~~~~~l~~~~~~-e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~ 328 (466)
.+-++.++ .-..-.|.++-|.-. |+.+.+.+|.+..+-. ..+++.. .-.+.....+|..+-+.+| .
T Consensus 154 ~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~-----gW~~mal~d~le~lp~~~~--~ 226 (357)
T COG4225 154 PEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWARGN-----GWYAMALADLLELLPEDHP--D 226 (357)
T ss_pred HHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCCceeeeccc-----chHHHHHHHHHHhCCCCCc--h
Confidence 23333333 223345667744332 5566666676654310 1122211 1123333334444333222 2
Q ss_pred hhhhHHHHHHHHHHHHHhcccCCCccccC--CCcc----cchHHHHHHHHHH---ccCC-CCCcHHHHHHHHHHHhccCC
Q 012325 329 QEDVDHCIKRAVKFIEKIQELDGSWYGSW--GVCF----TYGTWFGVKGLVA---AGMN-YSNSSSIRKACEFLLSKQRP 398 (466)
Q Consensus 329 ~~~i~~~i~ra~~~L~~~Q~~DG~W~g~w--g~~~----~Y~T~~al~aL~~---~g~~-~~~~~~i~ra~~~Ll~~Q~~ 398 (466)
+.++...++.-++=|.+.|.++|-|+..- |... +.+|+.-..||.. .|.- ....+.++||.+=|+.+-.+
T Consensus 227 r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~ 306 (357)
T COG4225 227 RRELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDE 306 (357)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccc
Confidence 45677888899999999999999997421 1122 3456655566665 4442 23457999999999999887
Q ss_pred CCCCCCc--cccc-cc-ccccCCCCCCCchhHHHHHHHHHHHc
Q 012325 399 SGGWGES--YLSC-QK-KVYSNLEGDRSHVVNTAWAMLALIDA 437 (466)
Q Consensus 399 DGgWge~--~~s~-~~-~~y~~~~~~~s~~~~TA~ALlaL~~a 437 (466)
+|-=|.- ..-| .+ ..|....-..++++.-+.++.+|+.+
T Consensus 307 ~g~~g~vs~~~~~~~~~~g~~~~~~~~~~~~~q~~g~g~~~la 349 (357)
T COG4225 307 EGEVGGVSLGTIVGHDLDGYRDYYPSRPTPYGQALGLGALLLA 349 (357)
T ss_pred ccccceeecCcccccccccccccccCccccCCcchhhHHHHHH
Confidence 7632211 1111 01 01111001245666667887777654
No 81
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=86.13 E-value=27 Score=38.73 Aligned_cols=264 Identities=13% Similarity=0.104 Sum_probs=129.7
Q ss_pred cchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCC------CC-ccCCCCCCC-chhhH
Q 012325 162 LWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAW------PF-STADHGWPI-SDCTS 233 (466)
Q Consensus 162 vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW------~f-~~~~~~~pd-~D~Ta 233 (466)
+-|+++++.||..+|... ...+..+||.+.|..+ |.|...|.. .|+ .= +--...+|. .|.||
T Consensus 287 ~RD~~~~~~AL~~~G~~~----~a~~~f~~l~~~~~~~---~~~~~~y~~---~g~~~~~~w~~~~~~~~~~pv~~~~~a 356 (612)
T COG3387 287 PRDASYAALALLAIGYKK----EALRFFEFLPDVQTPN---GKLYHKYSI---DGSDLAESWLPVSGYYNSFPVRIGNTA 356 (612)
T ss_pred cCcHHHHHHHHHHcCCHH----HHHHHHHHHHHhhCCC---CceeeEEec---CCCccccccccccCCCCCCceEEcchh
Confidence 447999999999999754 4778899999999986 445444432 332 11 000122333 47788
Q ss_pred HHHHHhHhhhcccccc-cCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCC-CCCcHH
Q 012325 234 EGLKASLLLSKLSSAI-VGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYP-CVECTS 311 (466)
Q Consensus 234 ~al~aL~~~~~~~~~~-~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~-~~~~Ta 311 (466)
..+-+|....+.-..+ .-.+.....+..+.+++..+-+.-=+|.. ..++-|....+ +++.++
T Consensus 357 ~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------p~~~~WEer~g~~~yt~~ 420 (612)
T COG3387 357 LVQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRRMEKIKANLPT----------------PDFDLWEERGGHFTYTKA 420 (612)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhcCCCC----------------CccceecccCCcccchHH
Confidence 7777765422111000 00000122344444555441111112210 00111211111 244555
Q ss_pred HHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHH----h-cccC-CCccccCCC--cccchHHHHHHHHHHccCCCCCcH
Q 012325 312 ASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEK----I-QELD-GSWYGSWGV--CFTYGTWFGVKGLVAAGMNYSNSS 383 (466)
Q Consensus 312 ~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~----~-Q~~D-G~W~g~wg~--~~~Y~T~~al~aL~~~g~~~~~~~ 383 (466)
.+..||-.....-.....+..........+.|++ . -..+ |.|.-..|. ..++. .++.+|...|....+++
T Consensus 421 ~~~agLd~A~~lA~~~gd~~~a~~~~~~ad~ik~~v~~~~~~~~~~~f~r~~~~~~~~~vD--asll~l~~fg~i~~~D~ 498 (612)
T COG3387 421 TVYAGLDAAADLAEEFGDKGSAEHWRKTADELKEAVLRRGYAEDGGYFVRSLGRKPDDTVD--ASLLGLVLFGFIPPDDP 498 (612)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhcccccCCeeehhcCCCcccccc--HHHhhccccCccCCCCH
Confidence 5555554432210000000001122222332322 2 2233 333322221 22222 24456666777656788
Q ss_pred HHHHHHHHHHhccCCCC-CCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 384 SIRKACEFLLSKQRPSG-GWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 384 ~i~ra~~~Ll~~Q~~DG-gWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
.+.+.++-+.+.-..+| ||..- ..-.+..+.. .+.+=+..|-|=...++..|. .+.+++.++++++.+.+
T Consensus 499 ~~~~t~~~I~~~L~~~~~gi~RY-~~~~~d~~~~--~~~~w~i~t~Wl~~~~~~~g~--~~~a~~ll~~l~~~a~~ 569 (612)
T COG3387 499 RILATVEAIERELLVDGGGIRRY-NNEYDDGLGG--DNGPWIITTLWLSEYYLALGR--LDEAKKLLEWLLAFASP 569 (612)
T ss_pred HHHHHHHHHHHHHhhcCCcEEcC-ccccccccCC--CCCcceeehhHHHHHHHHccc--hHHHHHHHHHHHHhcCC
Confidence 88888888888888877 56431 1100111111 122335678999999999887 44778889998887654
No 82
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=81.98 E-value=6.8 Score=39.74 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=62.5
Q ss_pred CCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcc--cCCCccccC-------CCcccchHHHHHHHHHHccC
Q 012325 307 VECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQE--LDGSWYGSW-------GVCFTYGTWFGVKGLVAAGM 377 (466)
Q Consensus 307 ~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~--~DG~W~g~w-------g~~~~Y~T~~al~aL~~~g~ 377 (466)
+-++++.|-+++.+... . .++..+.++++++||.+... .+|+|+-.. +....|..+|++.||..+..
T Consensus 20 ~~~q~R~~~~fa~a~~~-g---~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~ 95 (346)
T PF07221_consen 20 LWVQARQLYTFARAYRL-G---RPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARA 95 (346)
T ss_dssp HHHHHHHHHHHHHHHHT-T---SHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHC
T ss_pred eeeeHHHHHHHHHHHhc-C---chhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHH
Confidence 55788888888876542 2 24467889999999999874 458885321 22357889999999988533
Q ss_pred C--CCCcHHHHHHHHHHHhcc-CCC-CCCCCc
Q 012325 378 N--YSNSSSIRKACEFLLSKQ-RPS-GGWGES 405 (466)
Q Consensus 378 ~--~~~~~~i~ra~~~Ll~~Q-~~D-GgWge~ 405 (466)
. ....+.++++.++|.++- .++ |++.+.
T Consensus 96 tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~ 127 (346)
T PF07221_consen 96 TGDPEALELAEQTLEFLERRFWDPEGGGYRES 127 (346)
T ss_dssp TT-TTHHHHHHHHHHHHHHHTEETTTTEE--E
T ss_pred hCChhHHHHHHHHHHHHHHHhcccccCcceec
Confidence 2 123355667888888874 454 554443
No 83
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=81.75 E-value=57 Score=32.29 Aligned_cols=144 Identities=8% Similarity=-0.041 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhc
Q 012325 165 TAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSK 244 (466)
Q Consensus 165 Ta~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~ 244 (466)
..+++..+.+. -.+++.+.+.++.++|.+....+ ..+. .|. .......--...++-++.+|..+.+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~---~~~~---------~~~-~~~~~~~G~~hG~aGi~~~L~~l~~ 153 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERG---DPAL---------LWP-DFDRVDHGLLHGWAGIALFLLRLYK 153 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhcc---cccc---------ccc-cCCCCCCccccCcHHHHHHHHHHHH
Confidence 34455555555 45567788899999998875432 1211 120 0000000112345555556655543
Q ss_pred ccccccCCccchHHHHHHHHHHHhhcc-CCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhh
Q 012325 245 LSSAIVGEPIETKRLYDSVNVIFSLQN-ADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKL 323 (466)
Q Consensus 245 ~~~~~~g~~~~~~~i~~av~~Ll~~Qn-~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~ 323 (466)
. .+++...+...++++++.+... .++||.. ..... . ..+.-...++-++.+|..+.+.
T Consensus 154 ~----t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~--~~~~~-------------~--~~~~wchG~aGi~~~l~~l~~~ 212 (321)
T cd04791 154 A----TGDSRYLELAEEALDKELARAVVDDGGLLQ--VDEGA-------------R--LLPYLCSGSAGLGLLMLRLEAI 212 (321)
T ss_pred H----HCCHHHHHHHHHHHHHHHHhhccCCCCceE--cCCCC-------------c--cCcccCCCcHHHHHHHHHHHHh
Confidence 2 1223345667788888776544 3577732 11100 0 0011122344455555555443
Q ss_pred CCCCchhhhHHHHHHHHHHHHHh
Q 012325 324 YPGHWQEDVDHCIKRAVKFIEKI 346 (466)
Q Consensus 324 ~~~~~~~~i~~~i~ra~~~L~~~ 346 (466)
.. .+++.+.++++++.+.+.
T Consensus 213 ~~---d~~~~~~a~~~~~~~~~~ 232 (321)
T cd04791 213 TG---DKRWRDEADGIAHAALSS 232 (321)
T ss_pred cC---CHHHHHHHHHHHHHHhhh
Confidence 22 244556777777776654
No 84
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=79.38 E-value=50 Score=36.61 Aligned_cols=130 Identities=18% Similarity=0.267 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHH
Q 012325 182 GATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYD 261 (466)
Q Consensus 182 ~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~ 261 (466)
.+.+.++..-|.+..-++. |||+...+ +| ++..|..|+..... .+. ...+..
T Consensus 182 ~~~l~~~~~~l~~~~D~~~--------------GGfg~~pK---FP----~~~~l~~Llr~~~~----~~d---~~~~~~ 233 (667)
T COG1331 182 EEVLDRAAEALARSFDREY--------------GGFGSAPK---FP----PPHLLLFLLRYSLR----TGD---ERALDM 233 (667)
T ss_pred hHHHHHHHHHHHHhcchhh--------------CCcCCCCC---CC----ChHHHHHHHHHHHh----hCC---HHHHHH
Confidence 3568888988888876642 88887654 23 55677766654321 111 222333
Q ss_pred HHHHHHhhcc------CCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHH
Q 012325 262 SVNVIFSLQN------ADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHC 335 (466)
Q Consensus 262 av~~Ll~~Qn------~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~ 335 (466)
+..=|..|-. -.|||--|..++ .|+- | .|....+|. |..+.++...... ...+.+...
T Consensus 234 ~~~TL~~ma~GGIyDhlgGGF~RYStD~--~Wlv--P---HFEKMLyDn------A~l~~~y~~ay~~---tgd~~y~~~ 297 (667)
T COG1331 234 VLRTLDAMARGGIYDHLGGGFFRYSTDR--EWLV--P---HFEKMLYDN------ALLLRAYAEAYRA---TGDDLYRRA 297 (667)
T ss_pred HHHHHHHHHccCCccccCCceeeeecCC--ceec--h---hHHHHHHHH------HHHHHHHHHHHHH---hCCHHHHHH
Confidence 3333333433 258887666554 3331 2 133444443 4444444433221 112455688
Q ss_pred HHHHHHHHHHh-cccCCCccc
Q 012325 336 IKRAVKFIEKI-QELDGSWYG 355 (466)
Q Consensus 336 i~ra~~~L~~~-Q~~DG~W~g 355 (466)
++.-++||.+. ..++|+|+.
T Consensus 298 a~~i~~~l~rel~sp~ggFys 318 (667)
T COG1331 298 AEGILDYLLRELYSPEGGFYS 318 (667)
T ss_pred HHHHHHHHHHHhcCCCCceee
Confidence 99999999875 456888864
No 85
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=78.87 E-value=11 Score=46.32 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=62.8
Q ss_pred CCCchhhHHHHHHhHhhhcccccc-cCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccC
Q 012325 226 WPISDCTSEGLKASLLLSKLSSAI-VGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDY 304 (466)
Q Consensus 226 ~pd~D~Ta~al~aL~~~~~~~~~~-~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~ 304 (466)
|.+..-|+..++.++.+.+..... ....-..++++.++.-|+++|+.||+|+.|.... .
T Consensus 1167 ygc~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~~W~~~~--------------------~ 1226 (1621)
T COG2373 1167 YGCAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAFGLWGGNG--------------------S 1226 (1621)
T ss_pred ccchhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCceeecCCCC--------------------C
Confidence 456677888888877765433221 1112235789999999999999999999765421 1
Q ss_pred CCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHh
Q 012325 305 PCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKI 346 (466)
Q Consensus 305 ~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~ 346 (466)
+.+.+|+.++.+|...++..=.-+ ...+.++.+++.+.
T Consensus 1227 ~d~~ltaYa~~Fl~~A~e~g~~vp----~~~~~~~~~~~~~~ 1264 (1621)
T COG2373 1227 GDPWLTAYAVDFLLRAREQGYSVP----SDALNQMLERLLEY 1264 (1621)
T ss_pred cchhhhHHHHHHHhhhhhcCcCCC----HHHHHHHHHHHHHH
Confidence 335678888888888744211111 36778877755544
No 86
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=76.84 E-value=45 Score=36.98 Aligned_cols=132 Identities=22% Similarity=0.240 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCc---hhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHh
Q 012325 165 TAFAVQAIISTNLV---EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLL 241 (466)
Q Consensus 165 Ta~a~~AL~~ag~~---~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~ 241 (466)
-++++.||+.++.. +++-+..+++.+||++....+. -...+++ |+=. ...-.+|=|..+.+|+.
T Consensus 413 Nglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~r----l~~~~~~---G~a~------~~g~leDYA~~i~gll~ 479 (667)
T COG1331 413 NGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDR----LLRRYRG---GEAA------VAGLLEDYAFLILGLLA 479 (667)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccc----hheeeec---Cccc------ccccchhHHHHHHHHHH
Confidence 47899999987643 3456788999999999988641 1111221 2211 11235667777777776
Q ss_pred hhcccccccCCccchHHHHHHH----HHHHhhccCCCceecccccc-ccccccccCcccccCCccccCCCCCcHHHHHHH
Q 012325 242 LSKLSSAIVGEPIETKRLYDSV----NVIFSLQNADGGFATYELMR-SYPWLEVLNPAETFGDIVIDYPCVECTSASIQA 316 (466)
Q Consensus 242 ~~~~~~~~~g~~~~~~~i~~av----~~Ll~~Qn~dGgw~~~~~~~-~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~a 316 (466)
+.+.. + +.+-++.|. +-+..++.+.||| |.... +...+.. +.+ ..|.+++...+.++.+
T Consensus 480 lye~t----~---d~~yL~~A~~L~~~~i~~f~d~~gGf--~~t~~~~~~l~ir--~~~-----~~D~a~~S~na~~~~~ 543 (667)
T COG1331 480 LYEAT----G---DLAYLEKAIELADEAIADFWDDEGGF--YDTPSDSEDLLIR--PKE-----PTDGATPSGNAVAAQA 543 (667)
T ss_pred HHHhh----C---cHHHHHHHHHHHHHHHHHhcCCCCCc--ccCCCcccccccC--CCC-----CCCCCCCCHHHHHHHH
Confidence 65421 1 123333333 4456667777887 43221 1111111 122 2344445556666666
Q ss_pred HHhhhhhCC
Q 012325 317 LTSFKKLYP 325 (466)
Q Consensus 317 L~~~~~~~~ 325 (466)
|..+.....
T Consensus 544 L~~Ls~ltg 552 (667)
T COG1331 544 LLRLSLLTG 552 (667)
T ss_pred HHHHHhhcC
Confidence 666654433
No 87
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=68.67 E-value=1.3e+02 Score=31.58 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHhhccCCCceeccccc--cccc-cc--cccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCc--
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATYELM--RSYP-WL--EVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHW-- 328 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~~~~--~~~~-~l--~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~-- 328 (466)
-+.++-+++||++||.++|+|-.-..+ ..+. |- +.+|..+.-.......+..+.|+.+..+|+.....+....
T Consensus 97 lde~kwg~D~llkm~~~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k~~d~~ 176 (444)
T PF00759_consen 97 LDEAKWGLDWLLKMQDSDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFKDFDPA 176 (444)
T ss_dssp HHHHHHHHHHHHHTBSCTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHhccCCCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcccCCHH
Confidence 467888999999999997776421111 0011 10 0111000000111222235566666666666543322211
Q ss_pred -hhhhHHHHHHHHHHHHHhc
Q 012325 329 -QEDVDHCIKRAVKFIEKIQ 347 (466)
Q Consensus 329 -~~~i~~~i~ra~~~L~~~Q 347 (466)
.++.....+++-+|+.++.
T Consensus 177 ~A~~~L~~A~~~~~~a~~~~ 196 (444)
T PF00759_consen 177 YAAQCLKAAKEAYAFAKKNP 196 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 2344556667777887754
No 88
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=66.58 E-value=70 Score=39.53 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHH
Q 012325 180 EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRL 259 (466)
Q Consensus 180 ~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i 259 (466)
+.+..++.|+.=|.+.|..+ |++++-..+ +..|.-.||.+...|+..+. .|..++.+.+
T Consensus 1196 ~~~~~l~~a~~rL~~~Q~~~---------------G~F~~W~~~-~~~d~~ltaYa~~Fl~~A~e-----~g~~vp~~~~ 1254 (1621)
T COG2373 1196 DLRARLQDAIGRLLSLQGSN---------------GAFGLWGGN-GSGDPWLTAYAVDFLLRARE-----QGYSVPSDAL 1254 (1621)
T ss_pred hHHHHHHHHHHHHHhhhhcC---------------CceeecCCC-CCcchhhhHHHHHHHhhhhh-----cCcCCCHHHH
Confidence 45788999999999999986 444443333 55688899999999988743 2455678899
Q ss_pred HHHHHHHH-hhccC
Q 012325 260 YDSVNVIF-SLQNA 272 (466)
Q Consensus 260 ~~av~~Ll-~~Qn~ 272 (466)
.+++++++ .+||+
T Consensus 1255 ~~~~~~~~~~l~n~ 1268 (1621)
T COG2373 1255 NQMLERLLEYLQNP 1268 (1621)
T ss_pred HHHHHHHHHHHhCc
Confidence 99977554 45655
No 89
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=65.43 E-value=1.5e+02 Score=31.36 Aligned_cols=41 Identities=15% Similarity=-0.043 Sum_probs=25.4
Q ss_pred CCchhhHHHHHHhHhhhcccccccCCccchHH--HHHHHHHHHhh
Q 012325 227 PISDCTSEGLKASLLLSKLSSAIVGEPIETKR--LYDSVNVIFSL 269 (466)
Q Consensus 227 pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~--i~~av~~Ll~~ 269 (466)
|=.|.||..+.+|..+....... .....+. |+..++|+.+.
T Consensus 123 ~Q~D~~gl~l~~l~~~~~~g~~~--~~~~~~~~~I~~~~~yi~~~ 165 (448)
T PF00723_consen 123 PQNDGPGLRLLALWQYIDSGLQI--IYTYWEVSFIKNDLDYIERN 165 (448)
T ss_dssp -BTHHHHHHHHHHHHHHHTTHHH--HHTHHHHHTHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHcCCCc--ccccchhHHHHHHHHHHHHH
Confidence 56799999999988763211000 0112344 89999999774
No 90
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=64.56 E-value=19 Score=38.96 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=52.3
Q ss_pred cHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCcc-----------ccCCC--cccchHHHHHHHHHHc
Q 012325 309 CTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWY-----------GSWGV--CFTYGTWFGVKGLVAA 375 (466)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~-----------g~wg~--~~~Y~T~~al~aL~~~ 375 (466)
.+++-|+|++.+....+ .+++...+++.|+.|.+.|++||-.+ ..|.. ...|.....+.||.+.
T Consensus 61 ~~g~wl~a~a~~~~~~~---D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~ 137 (520)
T PF07944_consen 61 DVGKWLEAAAYAYAYTG---DPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDY 137 (520)
T ss_pred cHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHH
Confidence 46778888877654322 35677889999999999999998322 12332 1256666677777654
Q ss_pred ----cCCCCCcHHHHHHHHHH
Q 012325 376 ----GMNYSNSSSIRKACEFL 392 (466)
Q Consensus 376 ----g~~~~~~~~i~ra~~~L 392 (466)
|.. .--+.+.|..+|+
T Consensus 138 y~~tG~~-~~L~v~~k~ad~~ 157 (520)
T PF07944_consen 138 YEATGNE-RALDVATKLADWV 157 (520)
T ss_pred HHHHCcH-HHHHHHHHHHHHH
Confidence 332 2335566888888
No 91
>PLN02909 Endoglucanase
Probab=61.81 E-value=2.3e+02 Score=30.48 Aligned_cols=162 Identities=12% Similarity=0.047 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHhccccCCC---CCCcccccC--C------CCCCCCCCccCCCC----CCCchhhHHHH-HHhHhhh
Q 012325 180 EYGATLKKAHKYIKDSQVLEDC---PGNLDFWYR--H------ISKGAWPFSTADHG----WPISDCTSEGL-KASLLLS 243 (466)
Q Consensus 180 ~~~~~l~~a~~wL~~~Q~~~~~---~Gdw~~~~~--~------~~~GGW~f~~~~~~----~pd~D~Ta~al-~aL~~~~ 243 (466)
++.++|++++.|...+..-+.+ ...|+.-.- + .-.|||- +...+ .|.. .|+..| -+.....
T Consensus 34 nY~~aL~~sl~Fy~aQRsG~lp~~~~~~Wr~ds~l~Dg~~~~~DlsGGwy--DAGD~~Kf~~p~a-~s~~~L~w~~~~y~ 110 (486)
T PLN02909 34 NYKDALTKSIIFLEAQRSGKLPPNNRVPWRGDSALDDGKLANVDLVGGYY--DAGDNVKYGLPMA-FTVTTLAWSTLAYE 110 (486)
T ss_pred cHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccccCCccccCCCCCce--eCCCCceeCCchH-HHHHHHHHHHHHhH
Confidence 5789999999999888765422 122331110 0 1246663 11111 1221 222222 1222222
Q ss_pred cccccccCCccchHHHHHHHHHHHhhccCCCceecccccc---ccccccccCcccc-cCC--cccc--CCCCCcHHHHHH
Q 012325 244 KLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMR---SYPWLEVLNPAET-FGD--IVID--YPCVECTSASIQ 315 (466)
Q Consensus 244 ~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~---~~~~l~~~~~~e~-fg~--~~~d--~~~~~~Ta~vl~ 315 (466)
..-....+.+-..+.++-+++||++||..+|++-. .... .+.+ +.+|.+. -.+ ..++ .|..+.|+....
T Consensus 111 ~~~~~~g~~~d~ldeikw~~D~llk~~~~~~~~y~-qVg~~~~Dh~~--W~~Pe~~~~~R~~~~i~~~~pgtd~a~~~AA 187 (486)
T PLN02909 111 KELRATGELENVRAAIRWGTDYFLKAASRKNRLYV-QVGDPNLDHQC--WVRPENMKTPRTVLEIDEKTPGTEIAAETAA 187 (486)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHhccCCCeEEE-EeCCCCCCccc--CCChhhccCCceeEecCCCCCCcHHHHHHHH
Confidence 11111111222246788899999999999988732 2111 1111 0111110 011 1122 234566766666
Q ss_pred HHHhhhhhCCCCc---hhhhHHHHHHHHHHHHHhc
Q 012325 316 ALTSFKKLYPGHW---QEDVDHCIKRAVKFIEKIQ 347 (466)
Q Consensus 316 aL~~~~~~~~~~~---~~~i~~~i~ra~~~L~~~Q 347 (466)
+|+.....+..+. ..+.-...+++-+|..+..
T Consensus 188 AlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~ 222 (486)
T PLN02909 188 AMAASSMVFRHVDHKYSRRLLNKAKLLFKFAKAHK 222 (486)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 6766543332211 1334455667788887764
No 92
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=60.97 E-value=36 Score=37.68 Aligned_cols=127 Identities=20% Similarity=0.186 Sum_probs=69.0
Q ss_pred hhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceec-ccccc---ccccccccCcccccCCccccCCC
Q 012325 231 CTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFAT-YELMR---SYPWLEVLNPAETFGDIVIDYPC 306 (466)
Q Consensus 231 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~-~~~~~---~~~~l~~~~~~e~fg~~~~d~~~ 306 (466)
|++.+..||..++ ..+...+..+|+..+|+++|-|.. |..+. ...|+. +. +.-..-+=-
T Consensus 289 D~~~~~~AL~~~G-----------~~~~a~~~f~~l~~~~~~~~~~~~~y~~~g~~~~~~w~~-~~-----~~~~~~pv~ 351 (612)
T COG3387 289 DASYAALALLAIG-----------YKKEALRFFEFLPDVQTPNGKLYHKYSIDGSDLAESWLP-VS-----GYYNSFPVR 351 (612)
T ss_pred cHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhCCCCceeeEEecCCCcccccccc-cc-----CCCCCCceE
Confidence 5666667776654 356778899999999999987643 22222 122222 10 100000111
Q ss_pred CCcHHHHHHHHHhhhhhCCC-Cch-hhhHHHHHHHHHHHHH------h-cccC-CCccccCCCcccchHHHHHHHHHHc
Q 012325 307 VECTSASIQALTSFKKLYPG-HWQ-EDVDHCIKRAVKFIEK------I-QELD-GSWYGSWGVCFTYGTWFGVKGLVAA 375 (466)
Q Consensus 307 ~~~Ta~vl~aL~~~~~~~~~-~~~-~~i~~~i~ra~~~L~~------~-Q~~D-G~W~g~wg~~~~Y~T~~al~aL~~~ 375 (466)
++.|+.+.-+|...+....+ +.. ......+..+..|+.+ . ..+| |-|.+++| .++|.++....||.++
T Consensus 352 ~~~~a~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~WEer~g-~~~yt~~~~~agLd~A 429 (612)
T COG3387 352 IGNTALVQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRRMEKIKANLPTPDFDLWEERGG-HFTYTKATVYAGLDAA 429 (612)
T ss_pred EcchhhHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhcCCCCCccceecccCC-cccchHHHHHHHHHHH
Confidence 45577777666664332110 000 0012345555556554 2 2344 66777777 7888888777787765
No 93
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=57.96 E-value=73 Score=32.16 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=51.4
Q ss_pred cCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCC----CCCchhhHHHHHHhHhhhccccccc
Q 012325 175 TNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHG----WPISDCTSEGLKASLLLSKLSSAIV 250 (466)
Q Consensus 175 ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~----~pd~D~Ta~al~aL~~~~~~~~~~~ 250 (466)
.| .+++.+..+++++||.+.-... ..|||.++..+.+ -.+.-+.+.++.||..... .
T Consensus 36 ~g-~~~~l~~A~~~~~fl~~~~~D~-------------~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~-----t 96 (346)
T PF07221_consen 36 LG-RPEYLELAEHGFDFLRKHFRDP-------------EYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARA-----T 96 (346)
T ss_dssp TT-SHHHHHHHHHHHHHHHHTTBTT-------------TTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHC-----T
T ss_pred cC-chhHHHHHHHHHHHHHHhcccC-------------CCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHH-----h
Confidence 46 4457888999999999886622 1256655544333 1234466788888776322 2
Q ss_pred CCccchHHHHHHHHHHHhh-ccCCCce
Q 012325 251 GEPIETKRLYDSVNVIFSL-QNADGGF 276 (466)
Q Consensus 251 g~~~~~~~i~~av~~Ll~~-Qn~dGgw 276 (466)
+.+...+.+++++++|... .++++|+
T Consensus 97 g~~~~~~~A~~~~~~l~~~~~d~~~g~ 123 (346)
T PF07221_consen 97 GDPEALELAEQTLEFLERRFWDPEGGG 123 (346)
T ss_dssp T-TTHHHHHHHHHHHHHHHTEETTTTE
T ss_pred CChhHHHHHHHHHHHHHHHhcccccCc
Confidence 3333456778889998765 5665444
No 94
>PLN00119 endoglucanase
Probab=53.09 E-value=3.2e+02 Score=29.43 Aligned_cols=38 Identities=18% Similarity=0.438 Sum_probs=24.6
Q ss_pred cchHHHHHHHHHh---cCC-chhhHHHHHHHHHHHHhccccC
Q 012325 162 LWDTAFAVQAIIS---TNL-VEEYGATLKKAHKYIKDSQVLE 199 (466)
Q Consensus 162 vwDTa~a~~AL~~---ag~-~~~~~~~l~~a~~wL~~~Q~~~ 199 (466)
+|.-++.+.-|.. .|. ..++.++|.+++.|...+..-.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~nY~~aL~~sl~Ff~aQRsG~ 50 (489)
T PLN00119 9 LWTLSICIVLLVMSMARGAVSTNYGEALTKSLLYFEAQRSGK 50 (489)
T ss_pred hhHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhHhcCCCC
Confidence 5665554443332 132 3468899999999998877654
No 95
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=46.50 E-value=3e+02 Score=27.09 Aligned_cols=36 Identities=11% Similarity=-0.106 Sum_probs=21.8
Q ss_pred chHHHHHHHHHhc---CCchhhHHHHHHHHHHHHhcccc
Q 012325 163 WDTAFAVQAIIST---NLVEEYGATLKKAHKYIKDSQVL 198 (466)
Q Consensus 163 wDTa~a~~AL~~a---g~~~~~~~~l~~a~~wL~~~Q~~ 198 (466)
-+++-++.+|.+. --.+++.+..+++++++++....
T Consensus 139 hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~ 177 (321)
T cd04791 139 HGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVV 177 (321)
T ss_pred cCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhcc
Confidence 4455555555443 22345667788888888877554
No 96
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=44.06 E-value=99 Score=32.08 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCCceeccccccccccccccCcccccCCccc-cCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccC
Q 012325 272 ADGGFATYELMRSYPWLEVLNPAETFGDIVI-DYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELD 350 (466)
Q Consensus 272 ~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~-d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~D 350 (466)
++||| |+.-... |.+.. +.-..-++++-|-+++.++...-. ......+..+++|+.+.-+..
T Consensus 32 ~~GGf--fe~l~~d------------G~~~~~~~rr~~~~~Rqvy~fA~A~~~g~~---~~~~~~v~hG~~y~~~~~R~~ 94 (388)
T COG2942 32 EGGGF--FEALDRD------------GQILDETDRRLRVQARQVYCFAVAGLLGWR---GPWLDAVAHGIAYLARVGRDP 94 (388)
T ss_pred CCCCc--eeeeccC------------CccccCCCceeeeehhHHHHHHHHHHhcCC---ccHHHHHHhHHHHHHhcCcCC
Q ss_pred CCccccCCCc---------ccchHHHHHHHHHHccCCCCCc--HHHHHHHHHHHhc
Q 012325 351 GSWYGSWGVC---------FTYGTWFGVKGLVAAGMNYSNS--SSIRKACEFLLSK 395 (466)
Q Consensus 351 G~W~g~wg~~---------~~Y~T~~al~aL~~~g~~~~~~--~~i~ra~~~Ll~~ 395 (466)
.+.+..|-.+ ..|+-+|||.|+..+-...... +....+.+.|..+
T Consensus 95 ~gg~~~~~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~l~~~ 150 (388)
T COG2942 95 EGGWYFALDNDGGPVDATKDLYGHAFALLAAAHAATAGPPRADELLDEALDVLERR 150 (388)
T ss_pred CCCeEEEecCCCCcccccHhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
No 97
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=42.98 E-value=85 Score=31.72 Aligned_cols=66 Identities=20% Similarity=0.139 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCC-------CcccchHHHHHHHHHHcc
Q 012325 308 ECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG-------VCFTYGTWFGVKGLVAAG 376 (466)
Q Consensus 308 ~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg-------~~~~Y~T~~al~aL~~~g 376 (466)
.+++-++.+|....... ..+++.+.++++++|+.+.+.++|.|+...+ .++-+|+.=.+.+|..+.
T Consensus 165 HG~aGI~~~L~~~~~~~---~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~ 237 (343)
T cd04794 165 HGLAGILYILLQTPLFL---LKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAY 237 (343)
T ss_pred hhHHHHHHHHHhhhhhc---CCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHH
Confidence 34555556666554321 2245678999999999999888898875432 234566655555555443
No 98
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=39.01 E-value=3e+02 Score=27.69 Aligned_cols=75 Identities=15% Similarity=0.043 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhH
Q 012325 254 IETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVD 333 (466)
Q Consensus 254 ~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~ 333 (466)
...+.++++++|+.+.+.++|.|+.....+... . ....++ ++.-++.+|..+.+... .+++.
T Consensus 185 ~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~----------~-~~~wCh----G~~Gi~~~l~~~~~~~~---~~~~~ 246 (343)
T cd04794 185 SLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRD----------R-LVQWCH----GAPGIVYLLAKAYLVFK---EEQYL 246 (343)
T ss_pred cHHHHHHHHHHHHHHhhccCCCCCCccCCCCCC----------c-cccccC----CCchHHHHHHHHHHHhC---CHHHH
Confidence 346789999999999998899886532211000 0 011233 23334445544443322 24566
Q ss_pred HHHHHHHHHHHHh
Q 012325 334 HCIKRAVKFIEKI 346 (466)
Q Consensus 334 ~~i~ra~~~L~~~ 346 (466)
+.+.++++.+.+.
T Consensus 247 ~~~~~~~~~~~~~ 259 (343)
T cd04794 247 EAAIKCGELIWKR 259 (343)
T ss_pred HHHHHHHHHHHHh
Confidence 7888888776543
No 99
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=33.75 E-value=47 Score=34.34 Aligned_cols=22 Identities=27% Similarity=0.666 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCc
Q 012325 384 SIRKACEFLLSKQRPSGGWGES 405 (466)
Q Consensus 384 ~i~ra~~~Ll~~Q~~DGgWge~ 405 (466)
+.-.|.+||+..|++.|||...
T Consensus 381 aFyaAadWlV~NQd~kGGW~~p 402 (594)
T KOG3760|consen 381 AFYAAADWLVKNQDDKGGWSVP 402 (594)
T ss_pred HHHHHHHHHhhCCCCCCCCcch
Confidence 4446899999999999999754
No 100
>PLN02340 endoglucanase
Probab=33.48 E-value=7.1e+02 Score=27.71 Aligned_cols=89 Identities=10% Similarity=0.040 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHhhccCCCceecccc---ccccccccccCcccc-cCC--cccc--CCCCCcHHHHHHHHHhhhhhCCCC
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATYEL---MRSYPWLEVLNPAET-FGD--IVID--YPCVECTSASIQALTSFKKLYPGH 327 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~~~---~~~~~~l~~~~~~e~-fg~--~~~d--~~~~~~Ta~vl~aL~~~~~~~~~~ 327 (466)
.+.|+-++|||+.||.+++.+-. +. +..+.+-. +|.+. -.+ ..++ .|..++++....+|+.....+..+
T Consensus 119 ldeirw~~Dyllk~~~~~~~~~~-qVGdg~~DH~~W~--~PE~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vfk~~ 195 (614)
T PLN02340 119 LWAIRWGTDYFIKAHTQPNVLWG-QVGDGDSDHYCWE--RAEDMTTPRTAYKLDQNHPGSDLAGETAAALAAASKAFKPY 195 (614)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEE-EeCCCCcccccCC--ChhhcCCcCceeecCCCCCccHHHHHHHHHHHHHHHhccCC
Confidence 46788899999999987665521 11 11111111 11110 001 0122 244555665555666544332221
Q ss_pred c---hhhhHHHHHHHHHHHHHhc
Q 012325 328 W---QEDVDHCIKRAVKFIEKIQ 347 (466)
Q Consensus 328 ~---~~~i~~~i~ra~~~L~~~Q 347 (466)
. .++.-.+.+++-+|..+.+
T Consensus 196 D~~YA~~lL~~Ak~ly~fA~~~~ 218 (614)
T PLN02340 196 NSSYSDLLLVHAKQLFSFADKFR 218 (614)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 2334456677788888765
No 101
>PLN02613 endoglucanase
Probab=27.61 E-value=8.1e+02 Score=26.51 Aligned_cols=89 Identities=11% Similarity=0.115 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHhhccCCCceeccccccc---cccccccCccc-ccCCc--ccc--CCCCCcHHHHHHHHHhhhhhCCCC
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATYELMRS---YPWLEVLNPAE-TFGDI--VID--YPCVECTSASIQALTSFKKLYPGH 327 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~---~~~l~~~~~~e-~fg~~--~~d--~~~~~~Ta~vl~aL~~~~~~~~~~ 327 (466)
.+.++-+++||+.||..+|++-. ....+ +.+. ..|-+ ...+. .++ .+..+.|+.+..+|+.....+.++
T Consensus 115 ldeikw~lD~llkm~~~~~~~~~-QVGdg~~dH~~W--~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~vfk~~ 191 (498)
T PLN02613 115 RSAIRWGTDFILRAHTSPTTLYT-QVGDGNADHQCW--ERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASLVFKDV 191 (498)
T ss_pred HHHHHHHHHHHHHhccCCCeEEE-EeCCCCcccccc--CCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHHhcccC
Confidence 46778899999999988776632 11111 1111 11111 01111 111 234566655666666654333222
Q ss_pred c---hhhhHHHHHHHHHHHHHhc
Q 012325 328 W---QEDVDHCIKRAVKFIEKIQ 347 (466)
Q Consensus 328 ~---~~~i~~~i~ra~~~L~~~Q 347 (466)
. .++.-.+.+++-+|..+..
T Consensus 192 D~~yA~~~L~~Ak~ly~~a~~~~ 214 (498)
T PLN02613 192 DSSYSSKLLNHARSLFEFADKYR 214 (498)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 2334456667778887653
No 102
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=27.53 E-value=1.4e+02 Score=31.49 Aligned_cols=72 Identities=19% Similarity=0.160 Sum_probs=41.6
Q ss_pred cCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHH--HHHHHHHHHHhcc-cC-CCccccCCCc-ccchHHHHHHHHHHc
Q 012325 303 DYPCVECTSASIQALTSFKKLYPGHWQEDVDHC--IKRAVKFIEKIQE-LD-GSWYGSWGVC-FTYGTWFGVKGLVAA 375 (466)
Q Consensus 303 d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~--i~ra~~~L~~~Q~-~D-G~W~g~wg~~-~~Y~T~~al~aL~~~ 375 (466)
..+-.|.+|..+.+|..+.+.. ......+.+. |++.++|+.+.-+ +| |-|-++.|.. +++.++.+..||..+
T Consensus 121 ~~~Q~D~~gl~l~~l~~~~~~g-~~~~~~~~~~~~I~~~~~yi~~~w~~pd~dlWEe~~g~~~f~~S~~~~~~AL~~a 197 (448)
T PF00723_consen 121 GRPQNDGPGLRLLALWQYIDSG-LQIIYTYWEVSFIKNDLDYIERNWREPDFDLWEERNGIHFFTASSAMQWAALLRA 197 (448)
T ss_dssp S--BTHHHHHHHHHHHHHHHTT-HHHHHTHHHHHTHHHHHHHHHHHTTSBEE-TTSS-EEEEHH--HHHHHHHHHHHH
T ss_pred cCcCCCchHHHHHHHHHHHHcC-CCcccccchhHHHHHHHHHHHHHcCCcCCccccccCCCCccchhHHHHHHHHHHH
Confidence 3456789999999998873221 1111334455 9999999988743 44 6676555543 334666666666543
No 103
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.80 E-value=2.7e+02 Score=31.64 Aligned_cols=53 Identities=30% Similarity=0.337 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCccccccchhhHHHhhhhccccCCCcHHHHHHHHhhhcc
Q 012325 84 PGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDY 144 (466)
Q Consensus 84 ~~~~~r~~al~~~~~~i~~~~~~~~~~~~~pv~~~l~~l~~~~~~p~~~~~~~~~~~l~~~ 144 (466)
|=+.||..|++-.-+|+...|.|..|.. |+||.... ..|+.+++||...|.+-
T Consensus 306 ~~~~LrvlainiLgkFL~n~d~NirYva-------Ln~L~r~V-~~d~~avqrHr~tIleC 358 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNRDNNIRYVA-------LNMLLRVV-QQDPTAVQRHRSTILEC 358 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCccceeeee-------hhhHHhhh-cCCcHHHHHHHHHHHHH
Confidence 4457999999999999999999999874 55544422 34555788888877664
No 104
>PLN02308 endoglucanase
Probab=25.08 E-value=7.1e+02 Score=26.90 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhhccCCCceecccccc---ccccccccCcccc-cCCc--ccc--CCCCCcHHHHHHHHHhhhhhCCCC
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATYELMR---SYPWLEVLNPAET-FGDI--VID--YPCVECTSASIQALTSFKKLYPGH 327 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~~~~~---~~~~l~~~~~~e~-fg~~--~~d--~~~~~~Ta~vl~aL~~~~~~~~~~ 327 (466)
.+.++-+++||++||.++|++- +.... .+.+. ..|-+. -.+. .++ .+..+.++....+|+.....+...
T Consensus 115 ldeikw~~D~llkm~~~~~~vy-~qVg~~~~dh~~W--~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~~~ 191 (492)
T PLN02308 115 VKAVKWATDYLMKATAIPNVVY-VQVGDAYSDHNCW--ERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFRKR 191 (492)
T ss_pred HHHHHHHHHHHHHhcCCCCeEE-EEecCCCCCccCC--CChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhcccc
Confidence 3668889999999999999873 22222 11110 111110 0111 122 233456666666676654433221
Q ss_pred c---hhhhHHHHHHHHHHHHHhc
Q 012325 328 W---QEDVDHCIKRAVKFIEKIQ 347 (466)
Q Consensus 328 ~---~~~i~~~i~ra~~~L~~~Q 347 (466)
. .++.-.+.+++-+|..+.+
T Consensus 192 D~~YA~~lL~~Ak~ly~fa~~~~ 214 (492)
T PLN02308 192 DPAYSRLLLDRAVRVFAFADKYR 214 (492)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 1334456677788888864
No 105
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=24.33 E-value=2.7e+02 Score=29.81 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhhccCCCceec
Q 012325 256 TKRLYDSVNVIFSLQNADGGFAT 278 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~ 278 (466)
.+-++++++.+...|.+||.++.
T Consensus 168 ~~l~~~~l~~~~~~q~~~G~~p~ 190 (509)
T PF05592_consen 168 AALYRKWLRDFADSQRPDGLLPS 190 (509)
T ss_dssp HHHHHHHHHHHHGGTTTSTT-SS
T ss_pred HHHHHHHHHHHHHhhcccCCceE
Confidence 56789999999999999999875
No 106
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.18 E-value=6.5e+02 Score=25.97 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCccccccccc
Q 012325 334 HCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKV 413 (466)
Q Consensus 334 ~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~ 413 (466)
..-++-++||.+.....-. ..|...-..++..+|..+|.. .+...++.+++.+.+....|| |-.+...
T Consensus 132 ~~k~~l~~wL~~~~~~~~~-----~nNW~lF~v~v~~~L~~~G~~-~d~~~i~~~l~~~e~~Y~GdG-WY~DG~~----- 199 (361)
T PF10022_consen 132 EEKENLVDWLKQIRGIKPP-----DNNWLLFRVMVEAFLKKVGEE-YDEERIDYDLERIEEWYLGDG-WYSDGPE----- 199 (361)
T ss_pred HHHHHHHHHHHhcCcCCCc-----cchhHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHHhccCC-ccccCCc-----
Confidence 4566778899875432211 123444567788899999998 577889999999999888876 5332110
Q ss_pred ccCCCCCCCchhHHHHHH--HHHHH---cCCCC----chhHHHHHHHHHhccCCccCC
Q 012325 414 YSNLEGDRSHVVNTAWAM--LALID---AGQVR----INCCCSTLKVTLSLEREFSIN 462 (466)
Q Consensus 414 y~~~~~~~s~~~~TA~AL--laL~~---ag~~~----~~~i~rgv~~L~~~q~~~~~~ 462 (466)
..-+-++ +||+ +.|+. ++..+ ....+|+.+|....++=|+-+
T Consensus 200 ------~~~DYYn-s~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~d 250 (361)
T PF10022_consen 200 ------FQFDYYN-SWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPD 250 (361)
T ss_pred ------cCCcchH-HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 0111122 3443 22322 22222 123678888888877766654
No 107
>PLN03009 cellulase
Probab=22.36 E-value=1.2e+02 Score=32.86 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=24.1
Q ss_pred hhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCcc
Q 012325 320 FKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWY 354 (466)
Q Consensus 320 ~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~ 354 (466)
++..++....++|...|+=+++||++.|.++|..+
T Consensus 103 f~d~~~~~~~~diLdeikw~~D~llkm~~~~~~~y 137 (495)
T PLN03009 103 FGDLMPSSELRNSLVAIRWATDYLLKTVSQPNRIF 137 (495)
T ss_pred hHhhCCccccHHHHHHHHHHHHHHHHcccCcCeEE
Confidence 33333433346677888999999999987777654
No 108
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=22.15 E-value=1.2e+03 Score=26.59 Aligned_cols=255 Identities=15% Similarity=0.059 Sum_probs=0.0
Q ss_pred eCCCceeecCCCCCcch----HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCC
Q 012325 148 AEDGMKVQGYNGSQLWD----TAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTAD 223 (466)
Q Consensus 148 ~~~G~~~q~~~~s~vwD----Ta~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~ 223 (466)
.++.+.+++. +..+++ .++.+..|.+.--.+.+.....++++.+...-... ....
T Consensus 476 ~~~~~~~~~~-~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~--------------------~~~~ 534 (825)
T cd04792 476 DGDEWELSPL-GNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSEL--------------------KTDD 534 (825)
T ss_pred CCCcEEEecC-CCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcc--------------------cccc
Q ss_pred CCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCcccc
Q 012325 224 HGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVID 303 (466)
Q Consensus 224 ~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d 303 (466)
....-.+=.+-.+.+|..+.+ ..+.+...+.+.+.++.+......+...
T Consensus 535 ~~~gl~~G~aGi~~~L~~l~~----~~~~~~~~~~a~~~~~~l~~~~~~~~~~--------------------------- 583 (825)
T cd04792 535 TGIGAFSGLGGILYALTHLGK----LLKDDRLLNLAKEILDLIDELIEKDEKL--------------------------- 583 (825)
T ss_pred cCceeEechhHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhhccccCC---------------------------
Q ss_pred CCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccch-------HHHHHHHHHHcc
Q 012325 304 YPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYG-------TWFGVKGLVAAG 376 (466)
Q Consensus 304 ~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~-------T~~al~aL~~~g 376 (466)
....+++-++.+|..+.+..+. +.+.+.+.+++++|.+.+..+..|..........| .++++.-|....
T Consensus 584 -D~~~G~aGii~~Ll~l~~~~~~---~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~ 659 (825)
T cd04792 584 -DFISGAAGLILVLLSLYELFLS---ERFLDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVT 659 (825)
T ss_pred -CEeeecHHHHHHHHHHHhccCC---hHHHHHHHHHHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHHHHc
Q ss_pred CCCCCcHHHHHHHHHHHhccCCC-CCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHc--CCCC--chhHHHHHHH
Q 012325 377 MNYSNSSSIRKACEFLLSKQRPS-GGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDA--GQVR--INCCCSTLKV 451 (466)
Q Consensus 377 ~~~~~~~~i~ra~~~Ll~~Q~~D-GgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~a--g~~~--~~~i~rgv~~ 451 (466)
........+.+++++..+...++ ++|...........|.. | ..-.+++++-+... ...+ .+.+.++++.
T Consensus 660 ~d~~~~~~a~~~l~~~~~~~~~~~~~w~~~~~~~~~~~WCh--G----~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~ 733 (825)
T cd04792 660 GDSRYLKLAHKALKYERRLFSEEGWNWPRKDGNSFSAAWCH--G----APGILLARLELLKFNDLDDEELKEEIEIALKT 733 (825)
T ss_pred CcHHHHHHHHHHHHHHHHhcCHhhcCCCCcCcCCCCCcccC--C----cHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Q ss_pred HHhccCCccCCCC
Q 012325 452 TLSLEREFSINSC 464 (466)
Q Consensus 452 L~~~q~~~~~~~~ 464 (466)
+.+....-+..-|
T Consensus 734 ~~~~~~~~~~slC 746 (825)
T cd04792 734 TLKEGFGNNHSLC 746 (825)
T ss_pred HHHhcCCCCCeec
No 109
>PF11329 DUF3131: Protein of unknown function (DUF3131); InterPro: IPR021478 This bacterial family of proteins has no known function.
Probab=20.88 E-value=8.1e+02 Score=25.38 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=56.8
Q ss_pred CCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceec--cccccccccccccC-cccccCCcccc
Q 012325 227 PISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFAT--YELMRSYPWLEVLN-PAETFGDIVID 303 (466)
Q Consensus 227 pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~--~~~~~~~~~l~~~~-~~e~fg~~~~d 303 (466)
....+++.-|.||..+.+.. +...+.-++++.+.+..|..+..-+|+.+. |.... ...++..| |.+. +.
T Consensus 31 tT~wdiG~yL~al~AA~~lg--lIs~~e~~~Rl~~~L~tL~~lpl~~g~lPn~~Y~t~T-~~~~~~~~~p~~~-----~g 102 (367)
T PF11329_consen 31 TTMWDIGSYLMALVAARELG--LISREEFDQRLEKTLATLEKLPLFRGHLPNKWYNTQT-GQPVDYGNQPGER-----IG 102 (367)
T ss_pred cChHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHhCcccCCcCccceeecCc-CcccccCCCCCcc-----CC
Confidence 34567888888888776542 122223468899999999999998998743 43322 22222211 1110 22
Q ss_pred CCCCCcHHHHHHHHHhhhhhCCCC
Q 012325 304 YPCVECTSASIQALTSFKKLYPGH 327 (466)
Q Consensus 304 ~~~~~~Ta~vl~aL~~~~~~~~~~ 327 (466)
.|.+| .++.+.+|..+...+|.+
T Consensus 103 wSavD-~GrLl~~L~il~~~~P~~ 125 (367)
T PF11329_consen 103 WSAVD-IGRLLIALRILKQRYPEY 125 (367)
T ss_pred ccHhh-HHHHHHHHHHHHHHCchH
Confidence 23343 688999999998777765
No 110
>PLN02345 endoglucanase
Probab=20.57 E-value=8.4e+02 Score=26.16 Aligned_cols=89 Identities=10% Similarity=0.100 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhhccCCCceecccccc---ccccccccCcccc-cCC--ccccC--CCCCcHHHHHHHHHhhhhhCCCC
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATYELMR---SYPWLEVLNPAET-FGD--IVIDY--PCVECTSASIQALTSFKKLYPGH 327 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~~~~~---~~~~l~~~~~~e~-fg~--~~~d~--~~~~~Ta~vl~aL~~~~~~~~~~ 327 (466)
.+.|+-+++||+.||..+|++-. .... .+.+ +.+|.+. ..+ ..++. |..+.|+....+|+.....+...
T Consensus 85 ldelkw~~Dyllk~~~~~~~~y~-qVg~~~~Dh~~--W~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk~~ 161 (469)
T PLN02345 85 KDSLKWITDYLINAHPSENVLYI-QVGDPKLDHKC--WERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVFKSS 161 (469)
T ss_pred HHHHhHHHHHHHHhcCCCCeEEE-EecCCCCCccc--CCChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHhccC
Confidence 46688899999999999998842 2221 1111 1112110 111 12222 33456666666666654332221
Q ss_pred c---hhhhHHHHHHHHHHHHHhc
Q 012325 328 W---QEDVDHCIKRAVKFIEKIQ 347 (466)
Q Consensus 328 ~---~~~i~~~i~ra~~~L~~~Q 347 (466)
. ..+.....+++-+|..+.+
T Consensus 162 D~~YA~~lL~~Ak~ly~fa~~~~ 184 (469)
T PLN02345 162 DSTYSDTLLKHAKQLFNFADKYR 184 (469)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 1344456677788888764
No 111
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=20.13 E-value=66 Score=33.80 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCcc
Q 012325 330 EDVDHCIKRAVKFIEKIQELDGSWY 354 (466)
Q Consensus 330 ~~i~~~i~ra~~~L~~~Q~~DG~W~ 354 (466)
+++.+.++=+++||++.|.++|.++
T Consensus 94 ~dllde~kwg~D~llkm~~~~~~~~ 118 (444)
T PF00759_consen 94 PDLLDEAKWGLDWLLKMQDSDGTFY 118 (444)
T ss_dssp HHHHHHHHHHHHHHHHTBSCTTEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCCcee
Confidence 5677889999999999999966543
Done!