Query 012325
Match_columns 466
No_of_seqs 363 out of 1978
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 07:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 2E-87 7E-92 738.2 40.0 449 1-458 229-683 (732)
2 2sqc_A Squalene-hopene cyclase 100.0 8E-72 2.7E-76 607.5 38.8 416 1-458 166-587 (631)
3 2sqc_A Squalene-hopene cyclase 100.0 1.6E-32 5.5E-37 298.5 25.2 305 86-437 280-624 (631)
4 2h6f_B Protein farnesyltransfe 100.0 2.5E-29 8.6E-34 260.3 15.4 206 185-457 75-282 (437)
5 1w6k_A Lanosterol synthase; cy 99.9 3.8E-26 1.3E-30 251.4 16.6 316 84-437 353-719 (732)
6 1r76_A Pectate lyase; A-helica 99.9 2.8E-26 9.4E-31 231.7 13.6 201 184-404 82-335 (408)
7 1n4q_B Geranyltransferase type 99.9 6.5E-26 2.2E-30 230.6 13.9 193 230-456 49-256 (377)
8 3dss_B Geranylgeranyl transfer 99.9 5.1E-24 1.8E-28 213.8 20.8 249 118-440 53-304 (331)
9 1gxm_A Pectate lyase; mechanis 99.9 2.1E-25 7.2E-30 219.4 8.7 189 188-397 36-251 (332)
10 3dss_B Geranylgeranyl transfer 99.9 5.5E-24 1.9E-28 213.5 18.4 253 134-458 20-273 (331)
11 3q7a_B Farnesyltransferase bet 99.9 4.2E-22 1.4E-26 207.1 16.6 183 254-457 106-306 (520)
12 2h6f_B Protein farnesyltransfe 99.9 6.3E-21 2.1E-25 197.5 20.7 298 88-456 74-419 (437)
13 1hzf_A Complement factor C4A; 99.8 2.3E-21 8E-26 197.7 12.0 210 214-458 51-339 (367)
14 2wy7_A Complement C3D fragment 99.8 6.2E-21 2.1E-25 190.2 13.2 174 256-458 53-269 (310)
15 1qqf_A Protein (complement C3D 99.8 2.1E-20 7.3E-25 183.3 16.3 174 256-458 37-253 (277)
16 1qqf_A Protein (complement C3D 99.8 3.4E-19 1.2E-23 174.6 19.0 216 166-437 13-273 (277)
17 1n4q_B Geranyltransferase type 99.8 7.4E-19 2.5E-23 178.7 17.9 265 134-458 22-304 (377)
18 2wy7_A Complement C3D fragment 99.8 1.9E-18 6.6E-23 172.1 19.8 217 165-437 28-289 (310)
19 1hzf_A Complement factor C4A; 99.8 6.8E-18 2.3E-22 172.0 20.0 233 149-437 51-359 (367)
20 3q7a_B Farnesyltransferase bet 99.7 6.1E-16 2.1E-20 161.0 19.2 220 134-403 63-315 (520)
21 4acq_A Alpha-2-macroglobulin; 99.6 1.7E-14 5.9E-19 169.3 21.4 241 166-458 961-1221(1451)
22 1r76_A Pectate lyase; A-helica 99.6 1.3E-14 4.4E-19 146.7 15.6 201 257-458 81-329 (408)
23 2pn5_A TEP1R, thioester-contai 99.6 2.5E-15 8.6E-20 176.1 11.0 172 257-458 872-1081(1325)
24 2hr0_B Complement C3 alpha' ch 99.6 1.5E-14 5E-19 163.6 14.5 174 257-458 299-514 (915)
25 2hr0_B Complement C3 alpha' ch 99.6 8.7E-14 3E-18 157.3 20.5 222 160-437 268-534 (915)
26 1gxm_A Pectate lyase; mechanis 99.5 3.2E-15 1.1E-19 147.1 5.0 158 159-349 70-252 (332)
27 2pn5_A TEP1R, thioester-contai 99.4 1.6E-12 5.5E-17 152.3 18.3 216 160-437 844-1101(1325)
28 3dra_B Geranylgeranyltransfera 99.3 1E-10 3.4E-15 118.9 20.8 267 116-438 36-361 (390)
29 4acq_A Alpha-2-macroglobulin; 99.2 4.7E-11 1.6E-15 140.3 15.2 116 257-395 983-1108(1451)
30 3dra_B Geranylgeranyltransfera 99.2 2.2E-10 7.6E-15 116.3 15.8 189 232-459 35-254 (390)
31 4fxk_B Complement C4-A alpha c 99.2 3.5E-09 1.2E-13 117.5 24.6 253 160-458 337-616 (767)
32 2bb6_A TCII, TC II, transcobal 99.0 1.5E-09 5E-14 110.5 11.5 108 306-440 177-287 (414)
33 2pmv_A Gastric intrinsic facto 99.0 2E-09 7E-14 108.8 11.2 128 258-440 131-263 (399)
34 2b39_A C3; thioester, immune d 99.0 2.3E-08 7.8E-13 119.5 21.5 236 161-458 1016-1261(1661)
35 3cu7_A Complement C5; Mg domai 98.9 5.4E-08 1.9E-12 116.4 20.8 247 160-458 1013-1280(1676)
36 2bb6_A TCII, TC II, transcobal 98.9 1.1E-08 3.6E-13 104.2 12.1 148 159-375 133-284 (414)
37 4fxk_B Complement C4-A alpha c 98.8 3.5E-07 1.2E-11 101.4 23.1 233 134-437 370-636 (767)
38 3prx_B Cobra venom factor; imm 98.8 6E-10 2.1E-14 131.7 0.0 207 184-458 1031-1243(1642)
39 2b39_A C3; thioester, immune d 98.7 2E-07 7E-12 111.4 18.8 225 134-437 1048-1281(1661)
40 2pmv_A Gastric intrinsic facto 98.7 8.2E-08 2.8E-12 97.1 11.3 146 160-376 112-261 (399)
41 3cu7_A Complement C5; Mg domai 98.6 4.5E-07 1.5E-11 108.6 17.2 228 134-437 1049-1300(1676)
42 3pya_A ENT-copalyl diphosphate 97.8 0.00012 4.1E-09 79.7 12.3 91 337-441 220-312 (727)
43 3prx_B Cobra venom factor; imm 97.7 3.9E-06 1.3E-10 99.5 0.0 119 333-456 1029-1163(1642)
44 3s9v_A Abietadiene synthase, c 97.6 0.0025 8.5E-08 70.2 18.7 261 109-441 51-337 (785)
45 3k11_A Putative glycosyl hydro 97.5 0.00066 2.3E-08 70.1 13.1 248 163-455 82-364 (445)
46 3sdr_A Alpha-bisabolene syntha 97.5 0.0035 1.2E-07 69.4 19.5 262 109-440 78-364 (817)
47 3p5p_A Taxadiene synthase; cla 97.5 0.0021 7.2E-08 70.6 17.2 260 109-441 28-313 (764)
48 3sdr_A Alpha-bisabolene syntha 97.4 0.00026 8.8E-09 78.3 7.9 108 336-459 56-166 (817)
49 3pmm_A Putative cytoplasmic pr 97.2 0.041 1.4E-06 55.6 21.7 100 256-375 262-377 (382)
50 3s9v_A Abietadiene synthase, c 97.1 0.00074 2.5E-08 74.4 8.1 87 359-459 53-139 (785)
51 3p5p_A Taxadiene synthase; cla 97.1 0.00063 2.2E-08 74.7 6.8 104 335-456 9-115 (764)
52 3pya_A ENT-copalyl diphosphate 96.9 0.0015 5.2E-08 71.1 7.7 85 359-459 31-115 (727)
53 3pmm_A Putative cytoplasmic pr 96.3 0.19 6.5E-06 50.7 18.3 177 251-455 127-332 (382)
54 3k11_A Putative glycosyl hydro 96.2 0.21 7.2E-06 51.4 18.3 215 159-405 141-374 (445)
55 2gz6_A N-acetyl-D-glucosamine 96.0 0.029 9.8E-07 56.3 10.3 122 259-397 17-152 (388)
56 1nc5_A Hypothetical protein YT 95.8 0.19 6.4E-06 50.5 15.6 139 308-455 143-314 (373)
57 1nc5_A Hypothetical protein YT 95.5 0.37 1.3E-05 48.3 16.5 91 310-400 215-322 (373)
58 2gz6_A N-acetyl-D-glucosamine 95.3 0.57 2E-05 46.7 17.0 269 134-435 79-381 (388)
59 1lf6_A Glucoamylase; (alpha/al 93.6 1.2 4.3E-05 48.2 15.8 85 163-269 343-428 (684)
60 3gt5_A N-acetylglucosamine 2-e 93.0 2.1 7.3E-05 43.0 15.7 149 160-346 49-208 (402)
61 2ahf_A Unsaturated glucuronyl 92.1 4.8 0.00016 40.3 16.5 192 161-375 145-364 (377)
62 3gt5_A N-acetylglucosamine 2-e 91.8 8.8 0.0003 38.4 18.4 126 134-273 77-213 (402)
63 1ulv_A Glucodextranase; GH fam 91.6 2.7 9.3E-05 47.7 15.5 90 162-269 331-420 (1020)
64 2zzr_A Unsaturated glucuronyl 91.0 7.9 0.00027 39.0 16.9 218 134-376 139-390 (397)
65 2fba_A Glucoamylase Glu1; (alp 89.7 4.6 0.00016 42.0 14.1 102 162-270 68-201 (492)
66 3h7l_A Endoglucanase; dehydrog 89.5 4.1 0.00014 43.2 13.7 87 256-347 193-291 (586)
67 1ulv_A Glucodextranase; GH fam 89.2 1.4 4.7E-05 50.0 10.4 114 229-374 331-449 (1020)
68 2ahf_A Unsaturated glucuronyl 89.2 2.7 9.2E-05 42.1 11.6 132 252-401 106-262 (377)
69 2fba_A Glucoamylase Glu1; (alp 87.5 1.4 5E-05 45.7 8.6 164 188-375 29-230 (492)
70 1lf6_A Glucoamylase; (alpha/al 86.1 3.4 0.00011 44.8 10.8 111 230-374 343-457 (684)
71 2vn4_A Glucoamylase; hydrolase 85.7 1.8 6.3E-05 46.1 8.4 143 210-375 29-199 (599)
72 2vn4_A Glucoamylase; hydrolase 85.4 28 0.00094 37.0 17.3 99 162-272 52-172 (599)
73 2zzr_A Unsaturated glucuronyl 84.9 19 0.00065 36.1 15.0 130 253-401 133-287 (397)
74 1fp3_A N-acyl-D-glucosamine 2- 83.6 3.3 0.00011 41.3 8.9 129 258-402 18-166 (402)
75 2zbl_A Putative isomerase; N-a 80.2 4.8 0.00016 40.6 8.6 152 160-347 48-208 (421)
76 2p0v_A Hypothetical protein BT 78.0 29 0.001 35.7 13.5 224 161-409 178-444 (489)
77 1ks8_A Endo-B-1,4-glucanase; c 75.8 71 0.0024 32.3 17.1 90 256-347 93-192 (433)
78 1gai_A Glucoamylase-471; hydro 75.7 7.2 0.00025 40.2 8.4 43 332-375 154-198 (472)
79 3k7x_A LIN0763 protein; Q92DQ0 72.2 36 0.0012 33.3 12.3 165 161-375 44-225 (349)
80 2zbl_A Putative isomerase; N-a 70.8 23 0.0008 35.5 10.8 94 307-405 50-157 (421)
81 3rrs_A Cellobiose phosphorylas 70.7 1.3E+02 0.0044 33.1 18.1 102 161-274 365-479 (822)
82 1v7w_A Chitobiose phosphorylas 64.4 38 0.0013 37.0 11.6 32 163-199 349-380 (807)
83 3h7l_A Endoglucanase; dehydrog 62.9 25 0.00084 37.2 9.2 26 330-355 190-215 (586)
84 1wgn_A UBAP1, ubiquitin associ 61.9 10 0.00034 27.6 4.1 29 365-399 33-61 (63)
85 3qde_A Cellobiose phosphorylas 60.5 2E+02 0.0068 31.5 20.4 102 161-274 358-472 (811)
86 1fp3_A N-acyl-D-glucosamine 2- 54.9 1E+02 0.0036 30.1 12.1 107 229-353 55-166 (402)
87 2dna_A Unnamed protein product 54.2 13 0.00045 27.5 3.8 28 367-400 36-63 (67)
88 3e6u_A LANC-like protein 1; al 52.2 1.9E+02 0.0064 28.7 14.7 24 256-279 253-276 (411)
89 3rrs_A Cellobiose phosphorylas 49.4 2.5E+02 0.0084 30.8 14.8 85 256-351 381-479 (822)
90 3e6u_A LANC-like protein 1; al 48.8 1.2E+02 0.0041 30.2 11.3 67 307-376 230-302 (411)
91 1gai_A Glucoamylase-471; hydro 47.6 2.4E+02 0.0083 28.7 18.1 98 162-271 53-170 (472)
92 1wgn_A UBAP1, ubiquitin associ 45.9 22 0.00076 25.8 3.7 27 312-350 35-61 (63)
93 3gzk_A Cellulase; fold from GH 45.8 1.4E+02 0.0049 30.9 11.7 89 256-347 191-285 (537)
94 2dna_A Unnamed protein product 45.2 18 0.00062 26.7 3.3 29 311-351 35-63 (67)
95 3k7x_A LIN0763 protein; Q92DQ0 44.7 33 0.0011 33.6 6.3 162 161-354 90-256 (349)
96 1tf4_A T. fusca endo/EXO-cellu 44.1 3.1E+02 0.011 28.9 14.8 21 256-276 94-114 (605)
97 2crn_A Ubash3A protein; compac 42.3 27 0.00093 25.4 3.9 34 428-464 24-57 (64)
98 2cpw_A CBL-interacting protein 40.4 30 0.001 25.1 3.9 29 366-399 34-62 (64)
99 1vej_A Riken cDNA 4931431F19; 39.7 31 0.0011 25.9 4.0 28 367-400 46-73 (74)
100 1clc_A Endoglucanase CELD; EC: 38.8 1.8E+02 0.0062 30.9 11.3 89 256-347 235-329 (639)
101 1ks8_A Endo-B-1,4-glucanase; c 38.1 3.2E+02 0.011 27.3 15.1 25 175-199 86-110 (433)
102 3qde_A Cellobiose phosphorylas 37.4 2.9E+02 0.01 30.1 13.1 85 256-351 374-472 (811)
103 2knz_A Ubiquilin-4; cytoplasm, 33.1 39 0.0013 23.4 3.4 44 131-196 8-51 (53)
104 1vg5_A RSGI RUH-014, rhomboid 32.9 51 0.0017 24.7 4.2 30 364-399 42-71 (73)
105 1wiv_A UBP14, ubiquitin-specif 32.3 55 0.0019 24.4 4.3 29 365-399 43-71 (73)
106 1wji_A Tudor domain containing 31.5 52 0.0018 23.8 3.9 30 164-199 22-51 (63)
107 1v7w_A Chitobiose phosphorylas 31.3 1.7E+02 0.0058 31.7 9.9 21 256-276 363-383 (807)
108 2xfg_A Endoglucanase 1; hydrol 30.7 4.4E+02 0.015 26.7 13.3 90 256-347 115-214 (466)
109 2dah_A Ubiquilin-3; UBA domain 30.4 50 0.0017 23.1 3.6 25 367-397 26-50 (54)
110 3a0o_A Oligo alginate lyase; a 29.4 56 0.0019 35.5 5.6 68 332-401 334-410 (776)
111 2cos_A Serine/threonine protei 29.1 49 0.0017 23.3 3.2 30 164-198 22-51 (54)
112 1vg5_A RSGI RUH-014, rhomboid 28.5 52 0.0018 24.6 3.5 31 163-199 41-71 (73)
113 1vek_A UBP14, ubiquitin-specif 28.5 63 0.0021 24.8 4.1 34 428-464 44-77 (84)
114 1whc_A RSGI RUH-027, UBA/UBX 3 28.4 58 0.002 23.5 3.7 33 427-462 23-55 (64)
115 1clc_A Endoglucanase CELD; EC: 27.8 1.4E+02 0.0049 31.7 8.3 21 179-199 232-252 (639)
116 1veg_A NEDD8 ultimate buster-1 26.8 58 0.002 25.0 3.6 29 163-197 41-69 (83)
117 1ia6_A Cellulase CEL9M; cellul 26.0 5.1E+02 0.017 25.9 16.4 129 256-392 95-237 (441)
118 2ekk_A UBA domain from E3 ubiq 24.3 71 0.0024 21.3 3.3 24 165-195 23-46 (47)
119 2g0d_A Nisin biosynthesis prot 24.3 4.9E+02 0.017 25.2 11.8 47 307-355 205-254 (409)
120 2dai_A Ubadc1, ubiquitin assoc 23.5 81 0.0028 24.1 3.9 32 429-464 45-76 (83)
121 3eu8_A Putative glucoamylase; 23.5 2E+02 0.0068 29.0 7.9 98 164-268 66-168 (430)
122 2dak_A Ubiquitin carboxyl-term 23.3 49 0.0017 23.8 2.5 32 428-463 24-55 (63)
123 2dag_A Ubiquitin carboxyl-term 23.0 84 0.0029 23.4 3.8 33 428-463 24-56 (74)
124 1wr1_B Ubiquitin-like protein 22.5 75 0.0026 22.5 3.3 27 163-195 30-56 (58)
125 2bwb_A Ubiquitin-like protein 22.3 70 0.0024 21.5 3.0 26 163-194 20-45 (46)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=100.00 E-value=2e-87 Score=738.18 Aligned_cols=449 Identities=44% Similarity=0.846 Sum_probs=412.5
Q ss_pred CceecchhHHHHHHHhcCCCcccCCcchhhhhhhcccCCCCCCChhhhhcccccccCCCCCchHHHHHHHHHHHHHhhhh
Q 012325 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (466)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
||||+|+|||||+|||++||++|.+|++.+||+|||++||++|+|.++|+.|+++|+|+|++++++.++..+ +.+|+++
T Consensus 229 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~l-~~~e~~~ 307 (732)
T 1w6k_A 229 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-NLYEHHH 307 (732)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-HHHHHTC
T ss_pred HHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhccccccccccCCHHHHHHHHHHHH-HHhhhcC
Confidence 799999999999999999999998999999999999999999999999999999999999999888887777 6677754
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCCccccccchhhHHHhhhhcccc-CCCcHHHHHHHHhhhcceeeeCCCceeecCCC
Q 012325 81 MHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVE-DPNSEAFKLHIPRINDYLWIAEDGMKVQGYNG 159 (466)
Q Consensus 81 ~~~~~~~~r~~al~~~~~~i~~~~~~~~~~~~~pv~~~l~~l~~~~~-~p~~~~~~~~~~~l~~~~~~~~~G~~~q~~~~ 159 (466)
++++|++|+++++++|++++++++|++++||+++++|++++.. +|++|.+++|+++|.+|+|+.+||+++|++|+
T Consensus 308 ----~~~lr~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~~~~~~~~~l~~l~~~l~~~~dG~~~q~~~g 383 (732)
T 1w6k_A 308 ----SAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNG 383 (732)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEEECSSSC
T ss_pred ----cHHHHHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhheeCCCCceeCCCCC
Confidence 3789999999999999999999999999999999999988764 49999999999999999999999999999989
Q ss_pred CCcchHHHHHHHHHhcCCch--hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHH
Q 012325 160 SQLWDTAFAVQAIISTNLVE--EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLK 237 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~~--~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~ 237 (466)
++||||+++++||.++|+++ ++.+.+++|++||+++|++++ +|||..+||+.++|||+|++.++++||+|+||++++
T Consensus 384 s~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~-~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~ 462 (732)
T 1w6k_A 384 SQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462 (732)
T ss_dssp CHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhccccc-CCcccccccCCCCCeecCCCCCCCCCccccHHHHHH
Confidence 99999999999999999865 467899999999999999863 589999999999999999999999999999999999
Q ss_pred HhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHH
Q 012325 238 ASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQAL 317 (466)
Q Consensus 238 aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL 317 (466)
||..+.+..++. +..++.+++++|++||+++|++||||++|+.+++..|++.+||+++||+++++++++++|+++|.+|
T Consensus 463 aL~~~~~~~~~~-g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL 541 (732)
T 1w6k_A 463 AVLLLQEKCPHV-TEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQAL 541 (732)
T ss_dssp HHHHHHHHCTTC-CSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHH
T ss_pred HHHHHhcccccc-cchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHH
Confidence 998876533211 3345688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCc---HHHHHHHHHHHh
Q 012325 318 TSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNS---SSIRKACEFLLS 394 (466)
Q Consensus 318 ~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~---~~i~ra~~~Ll~ 394 (466)
..++...|.++.+++++.|+||++||++.|++||+|+++||++++|+|++++.||.++|..+..+ +.++||++||++
T Consensus 542 ~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls 621 (732)
T 1w6k_A 542 KYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLS 621 (732)
T ss_dssp HHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHT
T ss_pred HHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHH
Confidence 99988777787777888999999999999999999999999999999999999999999863333 799999999999
Q ss_pred ccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 395 KQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 395 ~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
+|++||||++++.||.++.|.+ +..|++++|||||++|+.+++.+.++++++++||+++|.+
T Consensus 622 ~Q~~DGGWge~~~s~~~~~y~~--~~~s~v~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~ 683 (732)
T 1w6k_A 622 RQMADGGWGEDFESCEERRYVQ--SAQSQIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLP 683 (732)
T ss_dssp TCCTTSCCCBCTHHHHHTSCCB--CSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCT
T ss_pred hcccCCCCCCCCccccccccCC--CCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCC
Confidence 9999999999998888888876 5678999999999999999988778899999999998864
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=100.00 E-value=8e-72 Score=607.53 Aligned_cols=416 Identities=23% Similarity=0.326 Sum_probs=360.2
Q ss_pred CceecchhHHHHHHHhcCCCcccCCcchhhhhhhcccCCCCCCChhhhhcccccccCCCCCchHHHHHHHHHHHHHhhhh
Q 012325 1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL 80 (466)
Q Consensus 1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
||||+|+|||||+|||++||++|+|+++ +| +|||++||++|+|.. +.|++.+...+...+ +++++
T Consensus 166 ~~~~~R~~~~P~~~l~~~r~~~~~~~~~-~l-~el~~~~~~~~~~~~----------~~~~~~~~~~~~~~l-~~~~~-- 230 (631)
T 2sqc_A 166 FGSWARATVVALSIVMSRQPVFPLPERA-RV-PELYETDVPPRRRGA----------KGGGGWIFDALDRAL-HGYQK-- 230 (631)
T ss_dssp SCHHHHHHHHHHHHHHHHCCCCCCCGGG-CC-GGGGCCSSCCCCCCC----------TTCCCHHHHHHHHHH-HHHHH--
T ss_pred hHHHHHHHHHhHHHHhhCCCccCCCCCC-CH-HHhcCCCccccCccc----------cccHHHHHHHHHHHH-HHhhc--
Confidence 7999999999999999999999988776 78 999999999999862 346666544443333 44444
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCCccccc-c--chhhHHHhhhhccccCCCcHHHHHHHHhhhcceeeeCC-Cceeec
Q 012325 81 MHWPGKKLREKALRNAIKHIHYEDENTRYLC-I--GPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAED-GMKVQG 156 (466)
Q Consensus 81 ~~~~~~~~r~~al~~~~~~i~~~~~~~~~~~-~--~pv~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~-G~~~q~ 156 (466)
+|++++|++|+++++++|.++++++++++ | ++++++++++++ +.+ +||.+++|++++.+++|..+| |+++|+
T Consensus 231 --~~~~~lr~~a~~~~~~~i~~~~~~~g~~~~i~p~~~~~~~~l~~~-g~~-~~~~~~~~~~~~~~~~~~~~dGg~~~~~ 306 (631)
T 2sqc_A 231 --LSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKIL-DMT-QHPAFIKGWEGLELYGVELDYGGWMFQA 306 (631)
T ss_dssp --SSCCTTHHHHHHHHHHHHHHHCCTTSSSTTSHHHHHHHHHHHHHT-TCT-TSHHHHHHHHGGGGGEEECTTSCEEECS
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHhceEEcCCCceeeCC
Confidence 34567999999999999999999887633 4 446777766555 333 999999999999999999888 899999
Q ss_pred CCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHH
Q 012325 157 YNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGL 236 (466)
Q Consensus 157 ~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al 236 (466)
| +|+||||+++++||.++|.+.+ ++.++||++||++.|+. .+|||..++|+.++|||+|++.|++||++||||.++
T Consensus 307 ~-~s~vwdta~~l~AL~~~G~~~~-~~~~~ka~~~L~~~q~~--~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al 382 (631)
T 2sqc_A 307 S-ISPVWDTGLAVLALRAAGLPAD-HDRLVKAGEWLLDRQIT--VPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVV 382 (631)
T ss_dssp S-CCHHHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHTCCC--SCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHH
T ss_pred C-CChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCC--CCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHH
Confidence 9 6999999999999999998765 78999999999999995 359999999999999999999999999999999999
Q ss_pred HHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCC--ccccCCCCCcHHHHH
Q 012325 237 KASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGD--IVIDYPCVECTSASI 314 (466)
Q Consensus 237 ~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~--~~~d~~~~~~Ta~vl 314 (466)
+||..++. +. .....+.++++++||+++|++||||+.|+.+++..+++.+| |++ .++|++++++|+.||
T Consensus 383 ~AL~~~~~-~~----~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~----F~~~~~~~d~~~vd~Ta~vl 453 (631)
T 2sqc_A 383 WALNTLRL-PD----ERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIP----FSDFGEVTDPPSEDVTAHVL 453 (631)
T ss_dssp HHHTTCCC-SC----HHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGST----TCSSSCSSCCCBHHHHHHHH
T ss_pred HHHHHcCC-Cc----cchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccc----cccCCcccCCCCchHHHHHH
Confidence 99987653 11 12356789999999999999999999999999999999887 544 478999999999999
Q ss_pred HHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHh
Q 012325 315 QALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLS 394 (466)
Q Consensus 315 ~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~ 394 (466)
.+|..++. +.+ .+.++||++||++.|++||||+++|+++++|+|++++.+|..+|.. ..++.++|+++||++
T Consensus 454 ~aL~~~g~--~~~-----~~~i~rai~~L~~~Q~~DGsw~g~wg~~~~y~Ta~~l~aL~~~g~~-~~~~~i~rav~~L~s 525 (631)
T 2sqc_A 454 ECFGSFGY--DDA-----WKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGID-TREPYIQKALDWVEQ 525 (631)
T ss_dssp HHHHTTTC--CTT-----SHHHHHHHHHHHHHCCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCC-TTSHHHHHHHHHHHH
T ss_pred HHHHhcCC--Ccc-----HHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHH
Confidence 99999874 322 3789999999999999999999999999999999999999999986 468999999999999
Q ss_pred ccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 395 KQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 395 ~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
+|++||||++++.+|.++.|.+ ++.|++++|+|||++|+.+|..+.++++|+++||+++|++
T Consensus 526 ~Q~~DGgWg~~~~sy~~~~~~~--~~~s~v~~Ta~ALlaL~~ag~~~~~~i~rav~wL~~~Q~~ 587 (631)
T 2sqc_A 526 HQNPDGGWGEDCRSYEDPAYAG--KGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRP 587 (631)
T ss_dssp TCCTTSCCCCCGGGGTCGGGTT--CSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCCT
T ss_pred hCcCCCCcCCccccccccccCC--CCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhccCC
Confidence 9999999999999988877764 5678999999999999999998888899999999999865
No 3
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=100.00 E-value=1.6e-32 Score=298.49 Aligned_cols=305 Identities=22% Similarity=0.235 Sum_probs=223.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCccc--cccchhh-HHHhhhhcc--ccCCCcHHHHHHHHhhhcceeeeCC----------
Q 012325 86 KKLREKALRNAIKHIHYEDENTRY--LCIGPVN-KVLNMLCCW--VEDPNSEAFKLHIPRINDYLWIAED---------- 150 (466)
Q Consensus 86 ~~~r~~al~~~~~~i~~~~~~~~~--~~~~pv~-~~l~~l~~~--~~~p~~~~~~~~~~~l~~~~~~~~~---------- 150 (466)
++..+++++++.+++..+++++.+ .+.+||+ +++.+.++. +..+++|.++|++++|++.....++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~dGg~~~~~~~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s 359 (631)
T 2sqc_A 280 HPAFIKGWEGLELYGVELDYGGWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLK 359 (631)
T ss_dssp SHHHHHHHHGGGGGEEECTTSCEEECSSCCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSC
T ss_pred CHHHHHHHHHHHhceEEcCCCceeeCCCCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCC
Confidence 467888888888887543332322 3467887 777665653 4445799999999999887653222
Q ss_pred --CceeecCC--CCCcchHHHHHHHHHhcCCch--hhHHHHHHHHHHHHhccccCCCCCCcccccCC---CCCCCCCCcc
Q 012325 151 --GMKVQGYN--GSQLWDTAFAVQAIISTNLVE--EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRH---ISKGAWPFST 221 (466)
Q Consensus 151 --G~~~q~~~--~s~vwDTa~a~~AL~~ag~~~--~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~---~~~GGW~f~~ 221 (466)
|+.++..| .+++|||+++++||.+++.+. ...+.+++|++||+++|+.+ |.|..+... .-.++|+|.+
T Consensus 360 ~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~d---Ggf~~~~~~~~~~~~~~~~F~~ 436 (631)
T 2sqc_A 360 PGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSN---GGWGAYDVDNTSDLPNHIPFSD 436 (631)
T ss_dssp CCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTT---SCBCSSCSSCCCSGGGGSTTCS
T ss_pred CCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCC---CCCCccCCCCcccccccccccc
Confidence 22222211 367999999999999998753 24678999999999999986 777543221 1235777765
Q ss_pred CCC--CCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCC
Q 012325 222 ADH--GWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGD 299 (466)
Q Consensus 222 ~~~--~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~ 299 (466)
.+. .+|++|||+.++++|..++. +...+.+++|++||+++|++|||| ||.
T Consensus 437 ~~~~~d~~~vd~Ta~vl~aL~~~g~--------~~~~~~i~rai~~L~~~Q~~DGsw--------------------~g~ 488 (631)
T 2sqc_A 437 FGEVTDPPSEDVTAHVLECFGSFGY--------DDAWKVIRRAVEYLKREQKPDGSW--------------------FGR 488 (631)
T ss_dssp SSCSSCCCBHHHHHHHHHHHHTTTC--------CTTSHHHHHHHHHHHHHCCTTSCC--------------------CCS
T ss_pred CCcccCCCCchHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHhcCCCCCC--------------------CCC
Confidence 432 34899999999999987642 224678999999999999999999 344
Q ss_pred ccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccc-----------cCCCcccchHHHH
Q 012325 300 IVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYG-----------SWGVCFTYGTWFG 368 (466)
Q Consensus 300 ~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g-----------~wg~~~~Y~T~~a 368 (466)
+.+++ +++|+.++.+|..++... ..+.++||++||++.|++||+|++ .++...++.|++|
T Consensus 489 wg~~~--~y~Ta~~l~aL~~~g~~~-------~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~A 559 (631)
T 2sqc_A 489 WGVNY--LYGTGAVVSALKAVGIDT-------REPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWA 559 (631)
T ss_dssp SBSSH--HHHHHHHHHHHHHTTCCT-------TSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHH
T ss_pred CCCCc--hHHHHHHHHHHHHhCCcc-------cHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHH
Confidence 44443 678999999999987531 136899999999999999999954 2345667789999
Q ss_pred HHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccc---cccccCCCCCCCchhHHHHHHHHHHHc
Q 012325 369 VKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQ---KKVYSNLEGDRSHVVNTAWAMLALIDA 437 (466)
Q Consensus 369 l~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~---~~~y~~~~~~~s~~~~TA~ALlaL~~a 437 (466)
|.||..+|.. ..+.++|+++||+++|++||||+++..+.. ..-|. .-....+.++|.||...
T Consensus 560 LlaL~~ag~~--~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl-----~y~~y~~~f~l~AL~~y 624 (631)
T 2sqc_A 560 LMALIAGGRA--ESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYL-----GYTMYRHVFPTLALGRY 624 (631)
T ss_dssp HHHHHHTTCS--SSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEE-----EETTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC--ChHHHHHHHHHHHhccCCCCCcCCCCccccccccccee-----eccchhhHHHHHHHHHH
Confidence 9999999986 568899999999999999999998764311 11111 11247789999999764
No 4
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.96 E-value=2.5e-29 Score=260.33 Aligned_cols=206 Identities=20% Similarity=0.161 Sum_probs=167.2
Q ss_pred HHHHHHHHHhc-cccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHH
Q 012325 185 LKKAHKYIKDS-QVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSV 263 (466)
Q Consensus 185 l~~a~~wL~~~-Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av 263 (466)
.++.++||+++ |..+ |||+..+.+.. -.+-.+|.||..++ ..++.+.+++++
T Consensus 75 ~~~hi~~l~~~lq~~~---------------gg~~a~D~~r~----~l~y~~l~aL~lLg--------~~~~~~~~~r~v 127 (437)
T 2h6f_B 75 REKHFHYLKRGLRQLT---------------DAYECLDASRP----WLCYWILHSLELLD--------EPIPQIVATDVC 127 (437)
T ss_dssp HHHHHHHHHHHTTEEC---------------GGGGGGTTCHH----HHHHHHHHHHHHTT--------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCC---------------CCcccccCCCc----cHHHHHHHHHHHhC--------CCCCHHHHHHHH
Confidence 47899999999 7764 88887765431 23333566665553 234567899999
Q ss_pred HHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHH
Q 012325 264 NVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFI 343 (466)
Q Consensus 264 ~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L 343 (466)
+||+++|++||||+.++. +.+++.+|.++|.+|..++.... .++ ..++|+++||
T Consensus 128 ~~l~s~Q~~dGGf~g~~~---------------------~~~~i~~T~~Al~aL~~lg~~~~---~~~--i~i~kav~~L 181 (437)
T 2h6f_B 128 QFLELCQSPEGGFGGGPG---------------------QYPHLAPTYAAVNALCIIGTEEA---YDI--INREKLLQYL 181 (437)
T ss_dssp HHHHHHBCTTSSBBSSTT---------------------CCBCHHHHHHHHHHHHHHCCHHH---HTT--SCHHHHHHHH
T ss_pred HHHHHhCCCCCCcCCccC---------------------CCcchhHHHHHHHHHHHhCCccc---ccc--hHHHHHHHHH
Confidence 999999999999986542 12457799999999999985310 011 2488999999
Q ss_pred HHhcccCCCcccc-CCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCC
Q 012325 344 EKIQELDGSWYGS-WGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRS 422 (466)
Q Consensus 344 ~~~Q~~DG~W~g~-wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s 422 (466)
++.|++||||++. ||.+++++|..|+.+|..+|.. +.+.++|+++||+++|++|||||++ ++..|
T Consensus 182 ~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~--~~~~v~k~~~~L~s~Q~~DGGwg~~------------pg~eS 247 (437)
T 2h6f_B 182 YSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII--TPDLFEGTAEWIARCQNWEGGIGGV------------PGMEA 247 (437)
T ss_dssp HTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCC--CTTTTTTHHHHHHHHBCTTSSBCSS------------TTSCC
T ss_pred HHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCCCCCcCCC------------CCCCC
Confidence 9999999999996 9999999999999999998875 6678999999999999999999986 25678
Q ss_pred chhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccC
Q 012325 423 HVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLER 457 (466)
Q Consensus 423 ~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~ 457 (466)
++.+|+|||++|+.+|..+...++++++||+++|.
T Consensus 248 h~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~ 282 (437)
T 2h6f_B 248 HGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQM 282 (437)
T ss_dssp CHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBC
T ss_pred CccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCC
Confidence 99999999999999999877789999999999996
No 5
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.93 E-value=3.8e-26 Score=251.38 Aligned_cols=316 Identities=15% Similarity=0.133 Sum_probs=208.3
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCcccc--cc-chhh-HHHhhhhcc--ccCC---CcHHHHHHHHhhhcceeee--C---
Q 012325 84 PGKKLREKALRNAIKHIHYEDENTRYL--CI-GPVN-KVLNMLCCW--VEDP---NSEAFKLHIPRINDYLWIA--E--- 149 (466)
Q Consensus 84 ~~~~~r~~al~~~~~~i~~~~~~~~~~--~~-~pv~-~~l~~l~~~--~~~p---~~~~~~~~~~~l~~~~~~~--~--- 149 (466)
|-++.++++++++.+++...++ +.+. +. +||+ |++.+.++. +... .++.+++++++|.+..... .
T Consensus 353 ~~~~~~~~~l~~l~~~l~~~~d-G~~~q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~ 431 (732)
T 1w6k_A 353 PASTAFQEHVSRIPDYLWMGLD-GMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQ 431 (732)
T ss_dssp TTSHHHHHHHHTSGGGEEEETT-EEEECSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGG
T ss_pred CCCHHHHHHHHHHHHhheeCCC-CceeCCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCccc
Confidence 3346777888888887654232 2222 33 6676 777766663 2212 3678899999997654322 1
Q ss_pred --------CCceeecC--CCCCcchHHHHHHHHHhcCC-----c-hhhHHHHHHHHHHHHhccccCCCCCCcccccCCCC
Q 012325 150 --------DGMKVQGY--NGSQLWDTAFAVQAIISTNL-----V-EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (466)
Q Consensus 150 --------~G~~~q~~--~~s~vwDTa~a~~AL~~ag~-----~-~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~ 213 (466)
+|+.+... ..+++|+|++++.||...+. . ....+.+++|++||+++|+.| |.|..+.++..
T Consensus 432 ~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~D---Ggw~a~~~~~~ 508 (732)
T 1w6k_A 432 KYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPD---GGFATYETKRG 508 (732)
T ss_dssp GGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTT---SCBCSSSCCCS
T ss_pred ccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCC---CCEEeecCCCc
Confidence 33333322 23689999999999987521 1 123578999999999999987 66653332110
Q ss_pred CCCCC--------CccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceecccccccc
Q 012325 214 KGAWP--------FSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSY 285 (466)
Q Consensus 214 ~GGW~--------f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~ 285 (466)
+.|- |......++.+++|+.+|.+|..+....+.. +.....+.+++|++||++.|++||||.
T Consensus 509 -~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~-~~~~~~~~i~rAv~yL~~~Q~~DGsW~-------- 578 (732)
T 1w6k_A 509 -GHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEH-RAAEIRETLTQGLEFCRRQQRADGSWE-------- 578 (732)
T ss_dssp -CGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTS-SHHHHHHHHHHHHHHHHHHSCTTSCCC--------
T ss_pred -hHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccc-cchhhHHHHHHHHHHHHhhcCCCCCcc--------
Confidence 1110 1111123457899999999998876421110 011235789999999999999999994
Q ss_pred ccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccC--------
Q 012325 286 PWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW-------- 357 (466)
Q Consensus 286 ~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~w-------- 357 (466)
+.+.+++ .+.|+.++.+|..++..... ..+.+.++||++||++.|++||+|.+..
T Consensus 579 ------------g~wg~~~--~Y~T~~al~AL~~aG~~~~~---~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y 641 (732)
T 1w6k_A 579 ------------GSWGVCF--TYGTWFGLEAFACMGQTYRD---GTACAEVSRACDFLLSRQMADGGWGEDFESCEERRY 641 (732)
T ss_dssp ------------CSSBSSH--HHHHHHHHHHHHHTTCCCBT---TBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSC
T ss_pred ------------CcCCCcc--chHHHHHHHHHHHhCCcccc---cchhHHHHHHHHHHHHhcccCCCCCCCCcccccccc
Confidence 3444444 45799999999999864211 1123689999999999999999997632
Q ss_pred ---CCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCccccc--ccccccCCCCCCCchhHHHHHHH
Q 012325 358 ---GVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSC--QKKVYSNLEGDRSHVVNTAWAML 432 (466)
Q Consensus 358 ---g~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~--~~~~y~~~~~~~s~~~~TA~ALl 432 (466)
+......|++||.||..+|.. +.+.++|+++||+++|++||||.+..... ...-|.. -......|+|.
T Consensus 642 ~~~~~s~v~~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~i~-----Y~~y~~~fpl~ 714 (732)
T 1w6k_A 642 VQSAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAIS-----YTSYRNIFPIW 714 (732)
T ss_dssp CBCSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEEEC-----CTTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCCcccccccchhhhc-----ccchhHHHHHH
Confidence 122345699999999999865 67889999999999999999998653211 0000110 11356788888
Q ss_pred HHHHc
Q 012325 433 ALIDA 437 (466)
Q Consensus 433 aL~~a 437 (466)
||...
T Consensus 715 AL~~y 719 (732)
T 1w6k_A 715 ALGRF 719 (732)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 6
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.93 E-value=2.8e-26 Score=231.68 Aligned_cols=201 Identities=13% Similarity=0.124 Sum_probs=146.5
Q ss_pred HHHHHHHHHHhccccCCCCCCcccccCCC--------------------CCCCCC-C---ccCCCCCCCchhhHHHHHHh
Q 012325 184 TLKKAHKYIKDSQVLEDCPGNLDFWYRHI--------------------SKGAWP-F---STADHGWPISDCTSEGLKAS 239 (466)
Q Consensus 184 ~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~--------------------~~GGW~-f---~~~~~~~pd~D~Ta~al~aL 239 (466)
..+++.+.|+..|... |+|.+..-.. .+|.|- . ...+.+++|.|+|+.++++|
T Consensus 82 ~A~~iAd~ll~~Q~~~---GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL 158 (408)
T 1r76_A 82 AARHVADVIVSFQTPA---GGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFL 158 (408)
T ss_dssp HHHHHHHHHHHHCCTT---SCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHccccC---CCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHH
Confidence 4688899999999986 8997643211 012221 0 11356789999999999999
Q ss_pred Hhhhcc-cccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHH
Q 012325 240 LLLSKL-SSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALT 318 (466)
Q Consensus 240 ~~~~~~-~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~ 318 (466)
..+... .. .+.+...+++.||++||++||++||||+.|++++ ..|+++|| |.| ++|++||++|+
T Consensus 159 ~rv~~~~t~--~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn-~~y~~~Ip----FnD--------Dvt~rvle~L~ 223 (408)
T 1r76_A 159 AQVVSQLAP--EEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLE-GGYHDAIT----YND--------DALVHVAELLS 223 (408)
T ss_dssp HHHHHHSCG--GGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCC-CGGGGSEE----CGG--------GHHHHHHHHHH
T ss_pred HHHHhhccc--cccHHHHHHHHHHHHHHHHccCCCCCCcCcCccc-cccccCCC----cCc--------HHHHHHHHHHH
Confidence 886542 10 0123468999999999999999999999999998 58999997 654 78999999999
Q ss_pred hhhhhCCCC------chhhhHHHHHHHHHHHHHhccc-CCCccccCCCcccchHHH----------HHHHHHHcc-----
Q 012325 319 SFKKLYPGH------WQEDVDHCIKRAVKFIEKIQEL-DGSWYGSWGVCFTYGTWF----------GVKGLVAAG----- 376 (466)
Q Consensus 319 ~~~~~~~~~------~~~~i~~~i~ra~~~L~~~Q~~-DG~W~g~wg~~~~Y~T~~----------al~aL~~~g----- 376 (466)
.++...+.+ ......++++||++||++.|.+ ||+|+ +||++|+|||+. +|.++..++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~L 302 (408)
T 1r76_A 224 DIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFL 302 (408)
T ss_dssp HHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHH
T ss_pred HHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHH
Confidence 987621111 1234568999999999999999 99999 999999999766 444444442
Q ss_pred --CCCCCcH----HHHHHHHHHHhccCCCCCCCC
Q 012325 377 --MNYSNSS----SIRKACEFLLSKQRPSGGWGE 404 (466)
Q Consensus 377 --~~~~~~~----~i~ra~~~Ll~~Q~~DGgWge 404 (466)
.. ..++ +|++|++||.++|++||+|..
T Consensus 303 M~~~-~~~~~~~~aI~~Av~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 303 MEIE-APSDAVKQAIRGGVAWLNTSVIRDRAWVK 335 (408)
T ss_dssp TTSS-SCCHHHHHHHHHHHHHHHHSCCCC-----
T ss_pred ccCC-CCCHHHHHHHHHHHHHHHHhhcCCCceee
Confidence 22 2233 899999999999999999974
No 7
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.93 E-value=6.5e-26 Score=230.60 Aligned_cols=193 Identities=15% Similarity=0.055 Sum_probs=156.3
Q ss_pred hhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhcc---------CCCceeccccccccccccccCcccccCCc
Q 012325 230 DCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQN---------ADGGFATYELMRSYPWLEVLNPAETFGDI 300 (466)
Q Consensus 230 D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn---------~dGgw~~~~~~~~~~~l~~~~~~e~fg~~ 300 (466)
..+=.+|.+|..++..+ .+ ..+++++||+++|+ +||||+.|+..+.+. .+..||.+ +.
T Consensus 49 ~~~yw~l~~L~lLg~l~------~~---~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~-~d~~~~~~---~~ 115 (377)
T 1n4q_B 49 TIAFFALSGLDMLDSLD------VV---NKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPF-NPSKNPGT---AH 115 (377)
T ss_dssp HHHHHHHHHHHHTTCGG------GS---CHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCC-CSSCSCCC---CC
T ss_pred HHHHHHHHHHHHhCCCC------cc---CHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCCh-hhhccccc---cc
Confidence 34445666766665321 11 27899999999999 689999998764432 34444443 57
Q ss_pred cccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccc--cCCCcccchHHHHHHHHHHccCC
Q 012325 301 VIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYG--SWGVCFTYGTWFGVKGLVAAGMN 378 (466)
Q Consensus 301 ~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g--~wg~~~~Y~T~~al~aL~~~g~~ 378 (466)
++|++++.+|.++|.+|..++...+ +| ..+++++||++.|++||||++ +||.+++++|+.|+.+|..+|..
T Consensus 116 ~~d~~~v~~T~~Al~~L~~lg~~~~-----~i--d~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~ 188 (377)
T 1n4q_B 116 PYDSGHIAMTYTGLSCLIILGDDLS-----RV--DKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNW 188 (377)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCCST-----TS--CHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCG
T ss_pred cCCCCCHHHHHHHHHHHHHhCcccc-----hh--hHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCC
Confidence 8899999999999999999985432 12 247999999999999999998 69999999999999999999874
Q ss_pred CCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCch----hHHHHHHHHHh
Q 012325 379 YSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRIN----CCCSTLKVTLS 454 (466)
Q Consensus 379 ~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~----~i~rgv~~L~~ 454 (466)
+.+.++|+++||+++|+.|||||++. +..|+..+|+||+.+|...+..+.. +++|+++||++
T Consensus 189 --~~~~v~ka~~fL~scQn~DGGfGe~p------------~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~ 254 (377)
T 1n4q_B 189 --SGMDMKKAISYIRRSMSYDNGLAQGA------------GLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM 254 (377)
T ss_dssp --GGSCHHHHHHHHHHTBCTTSSBBSST------------TSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHT
T ss_pred --ChHHHHHHHHHHHHhcCCCCCCCCCC------------CCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHh
Confidence 56789999999999999999999962 4578999999999999888876654 79999999999
Q ss_pred cc
Q 012325 455 LE 456 (466)
Q Consensus 455 ~q 456 (466)
+|
T Consensus 255 rQ 256 (377)
T 1n4q_B 255 RQ 256 (377)
T ss_dssp TB
T ss_pred cC
Confidence 88
No 8
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.92 E-value=5.1e-24 Score=213.77 Aligned_cols=249 Identities=17% Similarity=0.115 Sum_probs=181.7
Q ss_pred HHhhhhccccCCCcHHHHHHHHhhhcceeeeCCCcee-ecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc
Q 012325 118 VLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKV-QGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQ 196 (466)
Q Consensus 118 ~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~G~~~-q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q 196 (466)
+++.|.+.++ .+....++++++|... +.++|.+. .+...+.+-.|..|+++|.-.+--++ ..++++++||.+.|
T Consensus 53 ~l~~L~lLg~-l~~~~r~~~i~~l~s~--Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~~~--id~~k~~~fL~~~Q 127 (331)
T 3dss_B 53 GLTVMDLMGQ-LHRMNKEEILVFIKSC--QHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHV--INVDKVVAYVQSLQ 127 (331)
T ss_dssp HHHHHHHTTC-GGGSCHHHHHHHHHHT--BCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGG--SCHHHHHHHHHHTB
T ss_pred HHHHHHHhCC-CchhhHHHHHHHHhhh--cCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCccH--HHHHHHHHHHhccC
Confidence 4555555442 2222367888888876 45666432 22234678889999999988764332 23789999999999
Q ss_pred ccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCce
Q 012325 197 VLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGF 276 (466)
Q Consensus 197 ~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw 276 (466)
..| |||.-... +-+|+--|-.|+.+|..++.. +...++++++||+++|+.||||
T Consensus 128 ~~D---------------Gsf~~~~~--ge~d~~~ty~Al~~L~llg~~---------~~~~~~k~v~~L~s~Q~~dGGf 181 (331)
T 3dss_B 128 KED---------------GSFAGDIW--GEIDTRFSFCAVATLALLGKL---------DAINVEKAIEFVLSCMNFDGGF 181 (331)
T ss_dssp CTT---------------SCBBSSTT--CCBCHHHHHHHHHHHHHHTCG---------GGSCHHHHHHHHHTTBCTTSCB
T ss_pred CCC---------------CCEecccC--CCCchHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHhCcCCCCc
Confidence 986 44442211 123566677777777666431 3456899999999999999999
Q ss_pred eccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCcccc
Q 012325 277 ATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGS 356 (466)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~ 356 (466)
+.-+. ..+++..|..++.+|..++...+ ..++|+++||.+.|.+||+|.|+
T Consensus 182 g~~pg---------------------~esh~~~T~~al~aL~llg~~~~--------~~~~~~~~wL~~~Q~~dGGf~gr 232 (331)
T 3dss_B 182 GCRPG---------------------SESHAGQIYCCTGFLAITSQLHQ--------VNSDLLGWWLCERQLPSGGLNGR 232 (331)
T ss_dssp CSSTT---------------------CCCCHHHHHHHHHHHHHTTCGGG--------SCHHHHHHHHHTTBCTTSCBCSS
T ss_pred CCCCC---------------------CCCcHHHHHHHHHHHHhccccch--------hhHHHHHHHHHHhCCCCCCcCCC
Confidence 74211 12335568889999999876422 23889999999999999999998
Q ss_pred CC-CcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCC-CCCCCcccccccccccCCCCCCCchhHHHHHHHHH
Q 012325 357 WG-VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS-GGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLAL 434 (466)
Q Consensus 357 wg-~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D-GgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL 434 (466)
++ ...+.-|+|++.+|...|.. ....++++++||+++|+.| |||+.. +|..|++.+|.|+|.+|
T Consensus 233 ~~k~~D~cys~w~l~~L~llg~~--~~~~~~~~~~fil~cQ~~~~GGf~~~------------pg~~~d~~hT~~~l~~L 298 (331)
T 3dss_B 233 PEKLPDVCYSWWVLASLKIIGRL--HWIDREKLRSFILACQDEETGGFADR------------PGDMVDPFHTLFGIAGL 298 (331)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCG--GGSCHHHHHHHHHHTBCTTTCCBCSS------------TTSCCBHHHHHHHHHHH
T ss_pred CCCCCcchhHHHHHHHHHHcCCc--chhhHHHHHHHHHHhcCCCCCCcCCC------------CCCCCCHHHHHHHHHHH
Confidence 65 34555689999999999875 3456889999999999998 999975 36689999999999999
Q ss_pred HHcCCC
Q 012325 435 IDAGQV 440 (466)
Q Consensus 435 ~~ag~~ 440 (466)
..+|++
T Consensus 299 s~~g~~ 304 (331)
T 3dss_B 299 SLLGEE 304 (331)
T ss_dssp HHTTCT
T ss_pred HHcCCC
Confidence 999875
No 9
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.92 E-value=2.1e-25 Score=219.37 Aligned_cols=189 Identities=12% Similarity=0.102 Sum_probs=145.1
Q ss_pred HHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHH
Q 012325 188 AHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIF 267 (466)
Q Consensus 188 a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll 267 (466)
..+-|+..|... |+|.+..--...+--. ...+.+++|.|+|+.+|++|..+.... +.+...+++.||++||+
T Consensus 36 ~Ad~~l~~Q~~~---GGW~kn~d~~~~~~~~-~~~~~~t~DnddTa~vl~~Larv~~~~----~~~~y~~Ai~Rgl~wlL 107 (332)
T 1gxm_A 36 RADVVLSYQQNN---GGWPKNLDYNSVGNGG-GGNESGTIDNGATITEMVFLAEVYKSG----GNTKYRDAVRKAANFLV 107 (332)
T ss_dssp GHHHHHHTCCTT---SCCCSCCCTTTCCCCC-CCCSCEECGGGTTHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCC---CCCCcceecccccccC-CCCCCCCccCccHHHHHHHHHHHhccc----cchHHHHHHHHHHHHHH
Confidence 377889999976 8887643211110000 112456799999999999998865421 12346899999999999
Q ss_pred hhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCc--------hhhhHHHHHHH
Q 012325 268 SLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHW--------QEDVDHCIKRA 339 (466)
Q Consensus 268 ~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~--------~~~i~~~i~ra 339 (466)
+||++||||+.|++++ ..|+++|| |.| ++|++||++|..++...+.+. ..+..++++||
T Consensus 108 ~mQ~~nGGWpqFdpd~-~~Yl~~Ip----FnD--------DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rg 174 (332)
T 1gxm_A 108 NSQYSTGALPQFYPLK-GGYSDHAT----FND--------NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKG 174 (332)
T ss_dssp HHCCTTSCCBSEESCC-SGGGGSEE----CGG--------GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHH
T ss_pred hccCCCCCccccCCCc-ccccccCC----cch--------HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHH
Confidence 9999999999999986 78999998 654 789999999999975322220 13456899999
Q ss_pred HHHHHHhcccCCCccccCCCcccchHHH----------HHHHHHHccC-----CCCCcH----HHHHHHHHHHhccC
Q 012325 340 VKFIEKIQELDGSWYGSWGVCFTYGTWF----------GVKGLVAAGM-----NYSNSS----SIRKACEFLLSKQR 397 (466)
Q Consensus 340 ~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~----------al~aL~~~g~-----~~~~~~----~i~ra~~~Ll~~Q~ 397 (466)
++||++.|.+||||+++||.+|.|+|+. +|.++.++|+ ....++ +|++|++||.++|+
T Consensus 175 id~Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 175 TDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp HHHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred HHHHHHhhCccCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999988 8877777743 111245 79999999999999
No 10
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.91 E-value=5.5e-24 Score=213.52 Aligned_cols=253 Identities=17% Similarity=0.137 Sum_probs=190.5
Q ss_pred HHHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCC
Q 012325 134 FKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~ 213 (466)
..+|++.+++.+- ............+.+|-+=+++.+|.-.|..+. ...+++++||++.|+.+
T Consensus 20 ~~~h~~y~~~~~~-~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~--~~r~~~i~~l~s~Q~~d-------------- 82 (331)
T 3dss_B 20 LEKHADYIASYGS-KKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHR--MNKEEILVFIKSCQHEC-------------- 82 (331)
T ss_dssp HHHHHHHHHHTTS-SSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGG--SCHHHHHHHHHHTBCTT--------------
T ss_pred HHHHHHHHHHhcc-CCCCccceeccccHHHHHHHHHHHHHHhCCCch--hhHHHHHHHHhhhcCCC--------------
Confidence 6799999887521 122111222235789999999999999886443 23678999999999865
Q ss_pred CCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCc
Q 012325 214 KGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNP 293 (466)
Q Consensus 214 ~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~ 293 (466)
|||+.+. ...|++-+|..|+.+|..+.. .+...++++++||.++|++||||....
T Consensus 83 -GGF~g~~--g~~~~l~~Ty~Al~~L~~l~~---------~~~id~~k~~~fL~~~Q~~DGsf~~~~------------- 137 (331)
T 3dss_B 83 -GGVSASI--GHDPHLLYTLSAVQILTLYDS---------IHVINVDKVVAYVQSLQKEDGSFAGDI------------- 137 (331)
T ss_dssp -SCBBSST--TSCBCHHHHHHHHHHHHHTTC---------GGGSCHHHHHHHHHHTBCTTSCBBSST-------------
T ss_pred -CCcCCCC--CCCccHHHHHHHHHHHHHcCC---------ccHHHHHHHHHHHhccCCCCCCEeccc-------------
Confidence 5555433 235788999999999887642 123347899999999999999996310
Q ss_pred ccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCC-cccchHHHHHHHH
Q 012325 294 AETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGV-CFTYGTWFGVKGL 372 (466)
Q Consensus 294 ~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~-~~~Y~T~~al~aL 372 (466)
+|. +++..|..++.+|..++... ...++|+++||++.|++||+|+++++. .....|++|+.+|
T Consensus 138 ---~ge-----~d~~~ty~Al~~L~llg~~~--------~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL 201 (331)
T 3dss_B 138 ---WGE-----IDTRFSFCAVATLALLGKLD--------AINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFL 201 (331)
T ss_dssp ---TCC-----BCHHHHHHHHHHHHHHTCGG--------GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHH
T ss_pred ---CCC-----CchHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHH
Confidence 111 22445777888888887532 135899999999999999999998764 3456799999999
Q ss_pred HHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012325 373 VAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVT 452 (466)
Q Consensus 373 ~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L 452 (466)
..+|.. ....++++++||+++|++||||+... +..+++.-|.|++.+|...|..+...++++++||
T Consensus 202 ~llg~~--~~~~~~~~~~wL~~~Q~~dGGf~gr~------------~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fi 267 (331)
T 3dss_B 202 AITSQL--HQVNSDLLGWWLCERQLPSGGLNGRP------------EKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFI 267 (331)
T ss_dssp HHTTCG--GGSCHHHHHHHHHTTBCTTSCBCSST------------TCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHH
T ss_pred Hhcccc--chhhHHHHHHHHHHhCCCCCCcCCCC------------CCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 999875 33458999999999999999998752 3346678899999999999986656699999999
Q ss_pred HhccCC
Q 012325 453 LSLERE 458 (466)
Q Consensus 453 ~~~q~~ 458 (466)
++.|..
T Consensus 268 l~cQ~~ 273 (331)
T 3dss_B 268 LACQDE 273 (331)
T ss_dssp HHTBCT
T ss_pred HHhcCC
Confidence 999864
No 11
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.88 E-value=4.2e-22 Score=207.09 Aligned_cols=183 Identities=14% Similarity=0.072 Sum_probs=146.5
Q ss_pred cchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhH
Q 012325 254 IETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVD 333 (466)
Q Consensus 254 ~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~ 333 (466)
++.+..+++++||+++|++||||+.++. ..+++++.+|.++|.+|..++..+|.++.++|+
T Consensus 106 ld~~~~~~~I~~Ils~Q~~dGGFgg~p~-------------------~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id 166 (520)
T 3q7a_B 106 LDQGTKDRVVSTLLHFLSPKGGFGGGPA-------------------NSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLA 166 (520)
T ss_dssp CCHHHHHHHHHHHHTTBCTTSSBCSSCT-------------------TTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCCCCCCCCCC-------------------CCCCCcHHHHHHHHHHHHHhCccccchhhhhhh
Confidence 4567789999999999999999986542 135678999999999999999877777778887
Q ss_pred HHHHHHHHHHHHhcccCCCcccc-CCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCccc-cccc
Q 012325 334 HCIKRAVKFIEKIQELDGSWYGS-WGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYL-SCQK 411 (466)
Q Consensus 334 ~~i~ra~~~L~~~Q~~DG~W~g~-wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~-s~~~ 411 (466)
..++++++||++.|++||||++. ||.+++|+|+.|+.+|...|.. +.+.++|+++||+++|+.|||||++.. ++..
T Consensus 167 ~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~--~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~ 244 (520)
T 3q7a_B 167 AARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDII--TPELLHNVDKFVSACQTYEGGFACASFPFPSV 244 (520)
T ss_dssp HTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCC--CHHHHTTHHHHHHTTBCTTSSBCSCEEEEC--
T ss_pred hHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCcccccccc
Confidence 77899999999999999999994 9999999999999999999874 678899999999999999999999310 0000
Q ss_pred c-------cccC---CCCCCCchhHHHHHHHHHHHcCCCC------chhHHHHHHHHHhccC
Q 012325 412 K-------VYSN---LEGDRSHVVNTAWAMLALIDAGQVR------INCCCSTLKVTLSLER 457 (466)
Q Consensus 412 ~-------~y~~---~~~~~s~~~~TA~ALlaL~~ag~~~------~~~i~rgv~~L~~~q~ 457 (466)
. .-+| .++..|+...|..||-+|...+..+ .-.+++.++||.++|-
T Consensus 245 ~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~ 306 (520)
T 3q7a_B 245 VPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQG 306 (520)
T ss_dssp ----------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBC
T ss_pred ccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCC
Confidence 0 0000 0256788888888887777665532 2348999999999995
No 12
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.86 E-value=6.3e-21 Score=197.47 Aligned_cols=298 Identities=16% Similarity=0.090 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHHHhhcCCccccccc-----hhhHHHhhhhccccCCCcHHHHHHHHhhhcceeeeCCCceee-cCCCCC
Q 012325 88 LREKALRNAIKHIHYEDENTRYLCIG-----PVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQ-GYNGSQ 161 (466)
Q Consensus 88 ~r~~al~~~~~~i~~~~~~~~~~~~~-----pv~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~G~~~q-~~~~s~ 161 (466)
.+++.++++...+.. .+++|...- .++-+|++|.+.+...+.+.+++++++|... +.++|.+.- ....+.
T Consensus 74 ~~~~hi~~l~~~lq~--~~gg~~a~D~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~--Q~~dGGf~g~~~~~~~ 149 (437)
T 2h6f_B 74 QREKHFHYLKRGLRQ--LTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELC--QSPEGGFGGGPGQYPH 149 (437)
T ss_dssp CHHHHHHHHHHHTTE--ECGGGGGGTTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH--BCTTSSBBSSTTCCBC
T ss_pred cHHHHHHHHHHcCCC--CCCCcccccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh--CCCCCCcCCccCCCcc
Confidence 378888888776532 233442211 1233455556655455667789999999886 556664432 233567
Q ss_pred cchHHHHHHHHHhcCCchhh-HHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhH
Q 012325 162 LWDTAFAVQAIISTNLVEEY-GATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASL 240 (466)
Q Consensus 162 vwDTa~a~~AL~~ag~~~~~-~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~ 240 (466)
+..|..|+++|...|..... ...+++|++||.+.|+.| |||.... .+..|+--|-.++.+|.
T Consensus 150 i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~D---------------Gsf~~~~--~Ge~d~~~ty~A~~~L~ 212 (437)
T 2h6f_B 150 LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPD---------------GSFLMHV--GGEVDVRSAYCAASVAS 212 (437)
T ss_dssp HHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTT---------------SCBBSST--TCCBSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCC---------------CCeeecC--CCCccchhHHHHHHHHH
Confidence 88899999999998864111 234899999999999986 5555321 12335555666666665
Q ss_pred hhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhh
Q 012325 241 LLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSF 320 (466)
Q Consensus 241 ~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~ 320 (466)
.++. ...+.++++++||+++|+.||||+.-. + ..+++.-|+.+|.+|..+
T Consensus 213 llg~---------~~~~~v~k~~~~L~s~Q~~DGGwg~~p-----------------g----~eSh~~~T~~Al~aL~~l 262 (437)
T 2h6f_B 213 LTNI---------ITPDLFEGTAEWIARCQNWEGGIGGVP-----------------G----MEAHGGYTFCGLAALVIL 262 (437)
T ss_dssp HTTC---------CCTTTTTTHHHHHHHHBCTTSSBCSST-----------------T----SCCCHHHHHHHHHHHHHH
T ss_pred HhCC---------CChHHHHHHHHHHHHccCCCCCcCCCC-----------------C----CCCCccHHHHHHHHHHHc
Confidence 5542 134568899999999999999997321 1 124456799999999999
Q ss_pred hhhCCCCchhhhHHHHHHHHHHHHHhcc-cCCCccccCCC-cccchHHHHHHHHHHccC-------CC----CCcHHHHH
Q 012325 321 KKLYPGHWQEDVDHCIKRAVKFIEKIQE-LDGSWYGSWGV-CFTYGTWFGVKGLVAAGM-------NY----SNSSSIRK 387 (466)
Q Consensus 321 ~~~~~~~~~~~i~~~i~ra~~~L~~~Q~-~DG~W~g~wg~-~~~Y~T~~al~aL~~~g~-------~~----~~~~~i~r 387 (466)
+...+ ..++|+++||.+.|. ++|+|.|+.+- ..+.-|+|++.+|...+. .. ..--..++
T Consensus 263 g~~~~--------~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~ 334 (437)
T 2h6f_B 263 KRERS--------LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA 334 (437)
T ss_dssp TCGGG--------SCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHH
T ss_pred CCCCc--------ccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHH
Confidence 86422 248899999999998 78999987642 233445555555444321 10 00012456
Q ss_pred HHHHHHh-ccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCC-------------------C-------
Q 012325 388 ACEFLLS-KQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQ-------------------V------- 440 (466)
Q Consensus 388 a~~~Ll~-~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~-------------------~------- 440 (466)
..+||++ +|+++||++.. ++..+++.+|.++|.+|..++. .
T Consensus 335 l~~yIL~~~Q~~~GGf~d~------------Pg~~~D~yHT~y~L~gLsl~~~~~~~~~~~~~~~~~~~~~l~~i~p~~~ 402 (437)
T 2h6f_B 335 LQEYILMCCQCPAGGLLDK------------PGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYN 402 (437)
T ss_dssp HHHHHHHHSBCTTSCBCSS------------TTSCCCHHHHHHHHHHHHHHHEEEETTEEEECCCSSGGGCCCCCCTTTS
T ss_pred HHHHHHHHccCCCCCccCC------------CCCCCCHHHHHHHHHHHHHhccccccccccccccCCcccCccccCCccc
Confidence 7799987 89999999763 2567889999999998877542 0
Q ss_pred -CchhHHHHHHHHHhcc
Q 012325 441 -RINCCCSTLKVTLSLE 456 (466)
Q Consensus 441 -~~~~i~rgv~~L~~~q 456 (466)
+.+.++++.+|+.+..
T Consensus 403 i~~~~~~~~~~~~~~~~ 419 (437)
T 2h6f_B 403 IGPDKVIQATTYFLQKP 419 (437)
T ss_dssp SCHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 2345788999886655
No 13
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.85 E-value=2.3e-21 Score=197.66 Aligned_cols=210 Identities=17% Similarity=0.082 Sum_probs=143.3
Q ss_pred CCCCCCccCCCCCCCchhhHHHHHHhHhhhc---ccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccc
Q 012325 214 KGAWPFSTADHGWPISDCTSEGLKASLLLSK---LSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEV 290 (466)
Q Consensus 214 ~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~---~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~ 290 (466)
|+||++++.+..+|++ .++..|..... ..+.. .....+.|++|++||+++|++||||++|+.++
T Consensus 51 P~Gc~EQ~~s~~~P~~----~v~~~l~~~~~w~~~~~~~--~~~~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~------- 117 (367)
T 1hzf_A 51 PRGCGEQTMIYLAPTL----AASRYLDKTEQWSTLPPET--KDHAVDLIQKGYMRIQQFRKADGSYAAWLSRD------- 117 (367)
T ss_dssp CCSSHHHHHHHHHHHH----HHHHHHHHTTCSTTSCTTH--HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSC-------
T ss_pred CCCCHHHHHHHHHHHH----HHHHHHHHhhhcccCChhH--HHHHHHHHHHHHHHHHhccCCCCCeeccCCCC-------
Confidence 4899999877777754 44444433221 11100 01124679999999999999999999886432
Q ss_pred cCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcc---------
Q 012325 291 LNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCF--------- 361 (466)
Q Consensus 291 ~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~--------- 361 (466)
+....|++|+++|+.+++.+... .+.++||++||++.|++||+|++.|.+.+
T Consensus 118 --------------~~~~lTa~v~~~l~~a~~~~~v~-----~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~ 178 (367)
T 1hzf_A 118 --------------SSTWLTAFVLKVLSLAQEQVGGS-----PEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVG 178 (367)
T ss_dssp --------------CCHHHHHHHHHHHHHHGGGTCCC-----HHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSS
T ss_pred --------------CcHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhhccCCCcccccccccccccCCCCC
Confidence 23568999999999998653221 47899999999999999999999876543
Q ss_pred ----cchHHHHHHHHHHccCCCC----------CcHHHHHHHHHHHhc--cC----------------------------
Q 012325 362 ----TYGTWFGVKGLVAAGMNYS----------NSSSIRKACEFLLSK--QR---------------------------- 397 (466)
Q Consensus 362 ----~Y~T~~al~aL~~~g~~~~----------~~~~i~ra~~~Ll~~--Q~---------------------------- 397 (466)
++.|++++.||..+|.... .++.|+||++||.++ |+
T Consensus 179 ~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~~~~~~~ 258 (367)
T 1hzf_A 179 NDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPADLRGVAH 258 (367)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 5679999999998875211 246799999999876 32
Q ss_pred --------CCCC---CCCcccc------c-ccc----cccCCCCCCC-chhHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 012325 398 --------PSGG---WGESYLS------C-QKK----VYSNLEGDRS-HVVNTAWAMLALIDAGQVRINCCCSTLKVTLS 454 (466)
Q Consensus 398 --------~DGg---Wge~~~s------~-~~~----~y~~~~~~~s-~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~ 454 (466)
.+|+ |++...| + .++ .+.+ .+.| ++.+||||||+|++.+. +.+.+.++++||.+
T Consensus 259 ~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~--~~~s~~vE~TAyaLLall~~~~-~~~~~~~iv~WL~~ 335 (367)
T 1hzf_A 259 NNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMP--QAPALWIETTAYALLHLLLHEG-KAEMADQASAWLTR 335 (367)
T ss_dssp HHHHTTCEECSSCEECC--------------------------CCCHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHhhhcCCCCccCCCCCcccccccccccccccccccC--CCccchhHHHHHHHHHHHhccC-chhhhHHHHHHHHh
Confidence 1333 7764321 0 000 1111 1233 68899999999998642 45779999999999
Q ss_pred ccCC
Q 012325 455 LERE 458 (466)
Q Consensus 455 ~q~~ 458 (466)
+|+.
T Consensus 336 qrn~ 339 (367)
T 1hzf_A 336 QGSF 339 (367)
T ss_dssp HTTS
T ss_pred CcCC
Confidence 8864
No 14
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.84 E-value=6.2e-21 Score=190.17 Aligned_cols=174 Identities=18% Similarity=0.157 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHH
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHC 335 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~ 335 (466)
.+.|++|+.+++++|++||||++|+. +++++..|++|+.+|+.+.+..... .+.
T Consensus 53 ~~~i~~g~~~~l~~q~~dGgf~~f~~---------------------~~~s~wlTa~v~~~l~~a~~~~~v~-----~~~ 106 (310)
T 2wy7_A 53 LELIKKGYTQQLAFRQPSSAFAAFVK---------------------RAPSTWLTAYVVKVFSLAVNLIAID-----SQV 106 (310)
T ss_dssp HHHHHHHHHHHHTTBCTTSCBCSSTT---------------------SCCCHHHHHHHHHHHHHHTTTSCCC-----HHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcccCCC---------------------CCccHHHHHHHHHHHHHHHhcCCCC-----HHH
Confidence 35789999999999999999998753 2355778999999999987542211 368
Q ss_pred HHHHHHHHHH-hcccCCCccccCCCcc--------------cchHHHHHHHHHHcc------CCCCCcHHHHHHHHHHHh
Q 012325 336 IKRAVKFIEK-IQELDGSWYGSWGVCF--------------TYGTWFGVKGLVAAG------MNYSNSSSIRKACEFLLS 394 (466)
Q Consensus 336 i~ra~~~L~~-~Q~~DG~W~g~wg~~~--------------~Y~T~~al~aL~~~g------~~~~~~~~i~ra~~~Ll~ 394 (466)
+++|++||.+ .|++||+|.+.|++++ ++.|++++.+|..+| .+ ..++.|+||++||.+
T Consensus 107 i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~-~~~~~i~~A~~~L~~ 185 (310)
T 2wy7_A 107 LCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVN-SLPGSITKAGDFLEA 185 (310)
T ss_dssp HHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCT-THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCc-chHHHHHHHHHHHHH
Confidence 9999999996 9999999999987654 566999999999884 33 457899999999999
Q ss_pred ccCC-CCCCCCccccc--------------------ccccccCCCCCC-CchhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012325 395 KQRP-SGGWGESYLSC--------------------QKKVYSNLEGDR-SHVVNTAWAMLALIDAGQVRINCCCSTLKVT 452 (466)
Q Consensus 395 ~Q~~-DGgWge~~~s~--------------------~~~~y~~~~~~~-s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L 452 (466)
+|++ +++|+....+| .+..|...+++. .++++|||||++|++++. .+.+.++++||
T Consensus 186 ~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL 263 (310)
T 2wy7_A 186 NYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWL 263 (310)
T ss_dssp HGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHH
T ss_pred HhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHH
Confidence 9875 34343332221 122343211111 167899999999999976 35799999999
Q ss_pred HhccCC
Q 012325 453 LSLERE 458 (466)
Q Consensus 453 ~~~q~~ 458 (466)
+++|++
T Consensus 264 ~~qq~~ 269 (310)
T 2wy7_A 264 NEQRYY 269 (310)
T ss_dssp HHTTCC
T ss_pred HHccCC
Confidence 999876
No 15
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.84 E-value=2.1e-20 Score=183.29 Aligned_cols=174 Identities=17% Similarity=0.127 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHH
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHC 335 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~ 335 (466)
.+.|++|+.+++++|++||||++|+. +++++..|++|+.+|+.+.+..... .+.
T Consensus 37 ~~~i~~g~~~~l~~q~~dGgf~~f~~---------------------~~~s~wlTa~v~~~l~~a~~~~~v~-----~~~ 90 (277)
T 1qqf_A 37 LELIKKGYTQQLAFKQPISAYAAFNN---------------------RPPSTWLTAYVSRVFSLAANLIAID-----SQV 90 (277)
T ss_dssp HHHHHHHHHHHHTTBCTTSCBCSSTT---------------------SCCCHHHHHHHHHHHHHHTTTSCCC-----HHH
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCC---------------------CCccHHHHHHHHHHHHHHhhcCCCC-----HHH
Confidence 45789999999999999999998753 2355778999999999987542211 368
Q ss_pred HHHHHHHHHH-hcccCCCccccCCCcc--------------cchHHHHHHHHHHcc------CCCCCcHHHHHHHHHHHh
Q 012325 336 IKRAVKFIEK-IQELDGSWYGSWGVCF--------------TYGTWFGVKGLVAAG------MNYSNSSSIRKACEFLLS 394 (466)
Q Consensus 336 i~ra~~~L~~-~Q~~DG~W~g~wg~~~--------------~Y~T~~al~aL~~~g------~~~~~~~~i~ra~~~Ll~ 394 (466)
+++|++||.+ .|++||+|.+.|++++ ++.|++++.+|..+| .+ ..++.|+||++||.+
T Consensus 91 i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~-~~~~~i~~A~~~L~~ 169 (277)
T 1qqf_A 91 LCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVN-SLPGSINKAGEYLEA 169 (277)
T ss_dssp HHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCT-THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCC-chHHHHHHHHHHHHH
Confidence 9999999996 9999999999987654 566999999999884 33 457899999999999
Q ss_pred ccCC-CCCCCCccccc--------------------ccccccCCCCCC-CchhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012325 395 KQRP-SGGWGESYLSC--------------------QKKVYSNLEGDR-SHVVNTAWAMLALIDAGQVRINCCCSTLKVT 452 (466)
Q Consensus 395 ~Q~~-DGgWge~~~s~--------------------~~~~y~~~~~~~-s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L 452 (466)
+|++ +++|+....+| .+..|..-+++. +++.+|||||++|+.++. .+.+.++++||
T Consensus 170 ~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL 247 (277)
T 1qqf_A 170 SYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWL 247 (277)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHH
Confidence 9875 44443332222 022333211111 267899999999999976 35799999999
Q ss_pred HhccCC
Q 012325 453 LSLERE 458 (466)
Q Consensus 453 ~~~q~~ 458 (466)
+++|++
T Consensus 248 ~~qq~~ 253 (277)
T 1qqf_A 248 NDERYY 253 (277)
T ss_dssp HHCCCC
T ss_pred HHccCC
Confidence 999876
No 16
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.82 E-value=3.4e-19 Score=174.65 Aligned_cols=216 Identities=19% Similarity=0.128 Sum_probs=149.5
Q ss_pred HHHHHHHHhcCCc--------hhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHH
Q 012325 166 AFAVQAIISTNLV--------EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLK 237 (466)
Q Consensus 166 a~a~~AL~~ag~~--------~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~ 237 (466)
-+++..|..++.- .+....|+++++++++.|+.| |||+.... ..++.+.||.|++
T Consensus 13 ~~~~~yL~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~d---------------Ggf~~f~~--~~~s~wlTa~v~~ 75 (277)
T 1qqf_A 13 VIAVHYLDQTEQWEKFGLEKRQEALELIKKGYTQQLAFKQPI---------------SAYAAFNN--RPPSTWLTAYVSR 75 (277)
T ss_dssp HHHHHHHHHHTCHHHHCGGGHHHHHHHHHHHHHHHHTTBCTT---------------SCBCSSTT--SCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccCChhHHHHHHHHHHHHHHHHHHhcCCC---------------CCccccCC--CCccHHHHHHHHH
Confidence 3455555555531 234567999999999999986 77766543 3478999999999
Q ss_pred HhHhhhcccccccCCccchHHHHHHHHHHHh-hccCCCceeccccccccccccccCcccccCCcccc-CCCCCcHHHHHH
Q 012325 238 ASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNADGGFATYELMRSYPWLEVLNPAETFGDIVID-YPCVECTSASIQ 315 (466)
Q Consensus 238 aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~-~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d-~~~~~~Ta~vl~ 315 (466)
+|..+.+. ..++++.+++|++||.+ .|++||+|.....-.. + +..|..... .+.+..|+.|+.
T Consensus 76 ~l~~a~~~------~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~----~-----~~~g~~~~~~~~~~~lta~vl~ 140 (277)
T 1qqf_A 76 VFSLAANL------IAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIH----Q-----EMIGGFRNTKEADVSLTAFVLI 140 (277)
T ss_dssp HHHHHTTT------SCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSC----G-----GGGGGGGSCTTHHHHHHHHHHH
T ss_pred HHHHHhhc------CCCCHHHHHHHHHHHHHhccCCCCCccCCccccc----h-----hhcCCCCCCccCccchHHHHHH
Confidence 99887642 13567899999999996 9999999964221000 0 001110000 122556999999
Q ss_pred HHHhhhhhCCCCchhhhHHHHHHHHHHHHHhccc---------------------------------CCCccccCCCc--
Q 012325 316 ALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL---------------------------------DGSWYGSWGVC-- 360 (466)
Q Consensus 316 aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~---------------------------------DG~W~g~wg~~-- 360 (466)
+|...+...+. ......+.|+||++||.++|++ ||.|.+.++..
T Consensus 141 aL~~~~~~~~~-~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~ 219 (277)
T 1qqf_A 141 ALQEARDICEG-QVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLY 219 (277)
T ss_dssp HHHHHHHHHTT-TCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHH
T ss_pred HHHhhhhcccc-CCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccc
Confidence 99887642100 0012357899999999998764 44443333333
Q ss_pred ccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHc
Q 012325 361 FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDA 437 (466)
Q Consensus 361 ~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~a 437 (466)
.++.|++||.+|..++.. +.+.++++||.+.|+++|||+++ -.|+.||.||...
T Consensus 220 ~ve~Ta~aLlal~~~~~~----~~~~~~v~wL~~qq~~~Ggw~sT-------------------q~T~~aL~AL~~y 273 (277)
T 1qqf_A 220 NVEATSYALLALLLLKDF----DSVPPVVRWLNDERYYGGGYGST-------------------QATFMVFQALAQY 273 (277)
T ss_dssp HHHHHHHHHHHHHHTTCT----TSHHHHHHHHHHCCCCTTSTTCH-------------------HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCh----hhHHHHHHHHHHccCCCCCeecc-------------------hHHHHHHHHHHHH
Confidence 567899999999998753 46889999999999999999752 3699999999763
No 17
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.80 E-value=7.4e-19 Score=178.71 Aligned_cols=265 Identities=13% Similarity=0.089 Sum_probs=177.4
Q ss_pred HHHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCC
Q 012325 134 FKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~ 213 (466)
..+|++.+.+.+-.-++. ++....+.+|=+=+++.+|.-.|..++.. .+++++||+++|+..+ .+.. ...
T Consensus 22 ~~~H~~y~~~~l~~lp~~--~~~~d~~r~~~~yw~l~~L~lLg~l~~~~--~~~~i~wils~Q~~p~---~~~~---~~~ 91 (377)
T 1n4q_B 22 RDRHVRFFQRCLQVLPER--YSSLETSRLTIAFFALSGLDMLDSLDVVN--KDDIIEWIYSLQVLPT---EDRS---NLD 91 (377)
T ss_dssp HHHHHHHHHHHHHEECGG--GGGGGGGHHHHHHHHHHHHHHTTCGGGSC--HHHHHHHHHTTEECCC---TTCT---TGG
T ss_pred HHHHHHHHHHHhhcCCcc--ccccccchHHHHHHHHHHHHHhCCCCccC--HHHHHHHHHHhcCCcc---cccc---CCC
Confidence 678888887765322333 23334577888999999999888644332 7899999999999210 0000 001
Q ss_pred CCCCCCccCC---------------CCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceec
Q 012325 214 KGAWPFSTAD---------------HGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFAT 278 (466)
Q Consensus 214 ~GGW~f~~~~---------------~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~ 278 (466)
.|||+.+... ..+|.+.+|..||.+|..++... +....+++++||.++|++||||..
T Consensus 92 ~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~--------~~id~~~~~~fL~~~Q~~DGSf~g 163 (377)
T 1n4q_B 92 RCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDL--------SRVDKEACLAGLRALQLEDGSFCA 163 (377)
T ss_dssp GCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCS--------TTSCHHHHHHHHHHHBCTTSCBCS
T ss_pred CCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCccc--------chhhHHHHHHHHHHhcCCCCCeee
Confidence 2666655432 12578999999999998875321 122347899999999999999942
Q ss_pred cccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCC
Q 012325 279 YELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWG 358 (466)
Q Consensus 279 ~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg 358 (466)
.. .+.. .++..|..++.+|..++... ...++|+++||++.|+.||||++.-+
T Consensus 164 ~~------------------~wGe--~DirftY~Al~~l~llg~~~--------~~~v~ka~~fL~scQn~DGGfGe~p~ 215 (377)
T 1n4q_B 164 VP------------------EGSE--NDMRFVYCASCICYMLNNWS--------GMDMKKAISYIRRSMSYDNGLAQGAG 215 (377)
T ss_dssp ST------------------TCCC--CBHHHHHHHHHHHHHTTCGG--------GSCHHHHHHHHHHTBCTTSSBBSSTT
T ss_pred cc------------------CCCc--chhHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 10 1221 12445666777777776521 23589999999999999999987654
Q ss_pred Cc-ccchHHHHHHHHHHccCCCCC--cHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHH
Q 012325 359 VC-FTYGTWFGVKGLVAAGMNYSN--SSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALI 435 (466)
Q Consensus 359 ~~-~~Y~T~~al~aL~~~g~~~~~--~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~ 435 (466)
.. ..-.|++|+.+|...|..... ...++|+++||+++| +||+.... +....+-=|-|++-+|.
T Consensus 216 ~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~------------nK~~D~CYSfWv~~~l~ 281 (377)
T 1n4q_B 216 LESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRP------------NKPVDTCYSFWVGATLK 281 (377)
T ss_dssp SCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSST------------TSCCCTTHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCC------------CcchhHHHHHHHHHHHH
Confidence 32 222488899999888754111 127899999999999 88886531 11234555778877777
Q ss_pred HcCCCCchhHHHHHHHHHhccCC
Q 012325 436 DAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 436 ~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
..+..+--..++-.+||++.|.+
T Consensus 282 iL~~~~~~d~~~l~~fil~cQ~~ 304 (377)
T 1n4q_B 282 LLKIFQYTNFEKNRNYILSTQDR 304 (377)
T ss_dssp HTTCGGGSCHHHHHHHHHTTBCT
T ss_pred HhCCccccCHHHHHHHHHHHcCC
Confidence 76654323367889999998865
No 18
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.80 E-value=1.9e-18 Score=172.08 Aligned_cols=217 Identities=18% Similarity=0.113 Sum_probs=150.0
Q ss_pred HHHHHHHHHhcCCc--------hhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHH
Q 012325 165 TAFAVQAIISTNLV--------EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGL 236 (466)
Q Consensus 165 Ta~a~~AL~~ag~~--------~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al 236 (466)
+.+++..|..++.- .+....|+++++++++.|+.| |||+.... ..++.+.||.|+
T Consensus 28 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~d---------------Ggf~~f~~--~~~s~wlTa~v~ 90 (310)
T 2wy7_A 28 TVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPS---------------SAFAAFVK--RAPSTWLTAYVV 90 (310)
T ss_dssp HHHHHHHHHHHTCHHHHCTTHHHHHHHHHHHHHHHHHTTBCTT---------------SCBCSSTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHhcCCC---------------CCcccCCC--CCccHHHHHHHH
Confidence 44555566665531 134467999999999999986 77766543 347899999999
Q ss_pred HHhHhhhcccccccCCccchHHHHHHHHHHHh-hccCCCceeccccccccccccccCcccccCCcccc-CCCCCcHHHHH
Q 012325 237 KASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNADGGFATYELMRSYPWLEVLNPAETFGDIVID-YPCVECTSASI 314 (466)
Q Consensus 237 ~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~-~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d-~~~~~~Ta~vl 314 (466)
++|..+.+. ..++.+.+++|++||.+ .|++||+|......... +..|..... .+.+..|+.|+
T Consensus 91 ~~l~~a~~~------~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~---------~~~g~~~~~~~~~~~~ta~vl 155 (310)
T 2wy7_A 91 KVFSLAVNL------IAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQ---------EMIGGLRNNNEKDMALTAFVL 155 (310)
T ss_dssp HHHHHHTTT------SCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCG---------GGGGGGTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhc------CCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCH---------hhcCCcccccccccchHHHHH
Confidence 999887642 13567899999999996 99999999642211000 000110000 12255699999
Q ss_pred HHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhccc---------------------------------CCCccccCCCc-
Q 012325 315 QALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL---------------------------------DGSWYGSWGVC- 360 (466)
Q Consensus 315 ~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~---------------------------------DG~W~g~wg~~- 360 (466)
.+|...+..... ......+.|+||++||.++|++ +|.|.+.++..
T Consensus 156 ~aL~~~~~~~~~-~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~ 234 (310)
T 2wy7_A 156 ISLQEAKDICEE-QVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQL 234 (310)
T ss_dssp HHHHHHHHHHTT-TCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHH
T ss_pred HHHHhccccccc-CCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcc
Confidence 999988642100 0012357899999999998764 34443333332
Q ss_pred -ccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHc
Q 012325 361 -FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDA 437 (466)
Q Consensus 361 -~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~a 437 (466)
.++.|++||.+|.+++.. +.+.++++||+++|+++|||+++ -.|+.||.||...
T Consensus 235 ~~ve~Ta~aLlal~~~~~~----~~~~~~v~wL~~qq~~~Ggw~sT-------------------q~T~~aL~AL~~y 289 (310)
T 2wy7_A 235 YNVEATSYALLALLQLKDF----DFVPPVVRWLNEQRYYGGGYGST-------------------QATFMVFQALAQY 289 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCT----TTHHHHHHHHHHTTCCCCSTTCH-------------------HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhcCCh----hhHHHHHHHHHHccCCCCCeecc-------------------HHHHHHHHHHHHH
Confidence 567899999999998753 57899999999999999999752 3689999999864
No 19
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.78 E-value=6.8e-18 Score=172.01 Aligned_cols=233 Identities=18% Similarity=0.122 Sum_probs=154.4
Q ss_pred CCCceeecCCCCCcchHHHHHHHHHhcCC----c----hhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCc
Q 012325 149 EDGMKVQGYNGSQLWDTAFAVQAIISTNL----V----EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFS 220 (466)
Q Consensus 149 ~~G~~~q~~~~s~vwDTa~a~~AL~~ag~----~----~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~ 220 (466)
+.|.-.|.. +..+=..+++++|..++. . ++....|++|++||+++|+.| |||+..
T Consensus 51 P~Gc~EQ~~--s~~~P~~~v~~~l~~~~~w~~~~~~~~~~~~~~i~~g~~~ll~~Q~~d---------------Ggf~~~ 113 (367)
T 1hzf_A 51 PRGCGEQTM--IYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKAD---------------GSYAAW 113 (367)
T ss_dssp CCSSHHHHH--HHHHHHHHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCTT---------------SCBCSS
T ss_pred CCCCHHHHH--HHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHhccCCC---------------CCeecc
Confidence 555444432 222333467777776553 2 234668999999999999986 777766
Q ss_pred cCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCc
Q 012325 221 TADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDI 300 (466)
Q Consensus 221 ~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~ 300 (466)
..+ .++.+.||.++++|..+++. ..++.+.+++|++||++.|++||+|..-.. .+.+.+ -|..
T Consensus 114 ~~~--~~~~~lTa~v~~~l~~a~~~------~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~----~~~~~~-----~gg~ 176 (367)
T 1hzf_A 114 LSR--DSSTWLTAFVLKVLSLAQEQ------VGGSPEKLQETSNWLLSQQQADGSFQDPCP----VLDRSM-----QGGL 176 (367)
T ss_dssp TTS--CCCHHHHHHHHHHHHHHGGG------TCCCHHHHHHHHHHHGGGBCTTSCBCCSSC----CSCGGG-----GGGG
T ss_pred CCC--CCcHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHHHhhccCCCcccccc----cccccc-----cCCC
Confidence 543 35789999999999887642 134578999999999999999999953111 000000 0111
Q ss_pred cccCCCCCcHHHHHHHHHhhhhhCCCCc----hhhhHHHHHHHHHHHHHh--cc--------------------------
Q 012325 301 VIDYPCVECTSASIQALTSFKKLYPGHW----QEDVDHCIKRAVKFIEKI--QE-------------------------- 348 (466)
Q Consensus 301 ~~d~~~~~~Ta~vl~aL~~~~~~~~~~~----~~~i~~~i~ra~~~L~~~--Q~-------------------------- 348 (466)
..+.+.+..|+.||.+|...+...++.- .....+.|+||++||+++ ++
T Consensus 177 ~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~~~~~ 256 (367)
T 1hzf_A 177 VGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPADLRGV 256 (367)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 1123446789999999988764322100 022457899999999765 21
Q ss_pred ----------cCCC---cccc--------------------CCC-c--ccchHHHHHHHHHHccCCCCCcHHHHHHHHHH
Q 012325 349 ----------LDGS---WYGS--------------------WGV-C--FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFL 392 (466)
Q Consensus 349 ----------~DG~---W~g~--------------------wg~-~--~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~L 392 (466)
.+|. |... |+. . .+..|++||.+|.+.+.+ .+.+.+.++||
T Consensus 257 ~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~~---~~~~~~iv~WL 333 (367)
T 1hzf_A 257 AHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK---AEMADQASAWL 333 (367)
T ss_dssp HHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTCS---SHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccCc---hhhhHHHHHHH
Confidence 1322 4320 111 1 456799999999987533 47889999999
Q ss_pred HhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHc
Q 012325 393 LSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDA 437 (466)
Q Consensus 393 l~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~a 437 (466)
.+.||.+|||+++ --|+.||.||...
T Consensus 334 ~~qrn~~Ggw~sT-------------------qdTvvAL~AL~~y 359 (367)
T 1hzf_A 334 TRQGSFQGGFRST-------------------QDTVIALDALSAY 359 (367)
T ss_dssp HHHTTSTTCSCSH-------------------HHHHHHHHHHHHH
T ss_pred HhCcCCCCCcccH-------------------HHHHHHHHHHHHH
Confidence 9999999999753 3689999999864
No 20
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.69 E-value=6.1e-16 Score=160.96 Aligned_cols=220 Identities=13% Similarity=0.068 Sum_probs=149.2
Q ss_pred HHHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCC
Q 012325 134 FKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHIS 213 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~ 213 (466)
..+|++.+.+.+- .-...++....+.+|=.=+++.+|.-.|..-+ ....+++++||+++|+.+
T Consensus 63 ~~~Hi~yl~~~L~--~LP~~y~~~Dasr~wl~Yw~l~aL~LLg~~ld-~~~~~~~I~~Ils~Q~~d-------------- 125 (520)
T 3q7a_B 63 KQEHTQFLASSFF--QLPGKFVSLDASRPWLVFWTVHSLDLLGVALD-QGTKDRVVSTLLHFLSPK-------------- 125 (520)
T ss_dssp HHHHHHHHHHHHS--CBCGGGGGGGGGHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHTTBCTT--------------
T ss_pred HHHHHHHHHHHhh--hCChhhhhcccchHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCC--------------
Confidence 5688888777641 11122333335678888889999887774322 345888999999999975
Q ss_pred CCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccch--HHHHHHHHHHHhhccCCCceecccccccccccccc
Q 012325 214 KGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIET--KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVL 291 (466)
Q Consensus 214 ~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~--~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~ 291 (466)
||++.......+|.+.+|..|+.+|..++...+. ...+. ...+++++||.++|++||||..-
T Consensus 126 -GGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~---~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~------------ 189 (520)
T 3q7a_B 126 -GGFGGGPANSQIPHLLPTYASVCSLAIAGNDSST---GGWKDLAAARQSIYEFFMRCKRPDGGFVVC------------ 189 (520)
T ss_dssp -SSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTT---SBHHHHHHTHHHHHHHHHHHBCTTSCBBSS------------
T ss_pred -CCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccc---hhhhhhhhHHHHHHHHHHHHhCCCCCEecC------------
Confidence 5555444224568999999999999988754321 11111 22678999999999999999420
Q ss_pred CcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCcccc---------------
Q 012325 292 NPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGS--------------- 356 (466)
Q Consensus 292 ~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~--------------- 356 (466)
.++.. ++..|..++.+|..++... ...++++++||++.|+.||||++.
T Consensus 190 -------~wGe~--Dir~TY~Al~~L~lLg~~~--------~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~ 252 (520)
T 3q7a_B 190 -------EGGEV--DVRGTYCLLVVATLLDIIT--------PELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFP 252 (520)
T ss_dssp -------TTCCB--CHHHHHHHHHHHHHHTCCC--------HHHHTTHHHHHHTTBCTTSSBCSCEEEEC----------
T ss_pred -------CCCCc--hHHHHHHHHHHHHHcCCCC--------hHHHHHHHHHHHHhcCCCCCccCcccccccccccccccc
Confidence 12222 2566778888888877521 357999999999999999999871
Q ss_pred ---------CCCcccchHHHHHHHHHHccCCCC----CcHHHHHHHHHHHhccC---CCCCCC
Q 012325 357 ---------WGVCFTYGTWFGVKGLVAAGMNYS----NSSSIRKACEFLLSKQR---PSGGWG 403 (466)
Q Consensus 357 ---------wg~~~~Y~T~~al~aL~~~g~~~~----~~~~i~ra~~~Ll~~Q~---~DGgWg 403 (466)
.+....=.|..|+.+|...|.... ....+.+.++||..+|. ++||+.
T Consensus 253 ~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~ 315 (520)
T 3q7a_B 253 TSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFR 315 (520)
T ss_dssp --CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBB
T ss_pred ccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCccc
Confidence 111111126778888887765310 12347889999999996 458764
No 21
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.61 E-value=1.7e-14 Score=169.33 Aligned_cols=241 Identities=12% Similarity=0.085 Sum_probs=165.5
Q ss_pred HHHHHHHHhcCCc-hh----hHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCC--CCCCchhhHHHHHH
Q 012325 166 AFAVQAIISTNLV-EE----YGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADH--GWPISDCTSEGLKA 238 (466)
Q Consensus 166 a~a~~AL~~ag~~-~~----~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~--~~pd~D~Ta~al~a 238 (466)
.+++..|..++.. ++ ....|+++++||+++|..| |||++....+ ..++.+.||.++++
T Consensus 961 l~~~~yL~~t~q~~~~~~~~a~~~i~~g~~~ll~~q~~d---------------Ggf~~f~~~~~~~~~s~wlTAyv~~~ 1025 (1451)
T 4acq_A 961 IYVLDYLNETQQLTPEIKSKAIGYLNTGYQRQLNYKHYD---------------GSYSTFGERYGRNQGNTWLTAFVLKT 1025 (1451)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHGGGBCTT---------------SCBCSSTTGGGCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhcCCC---------------CCeeeccCCCCCCCCchhHHHHHHHH
Confidence 3455566666642 22 2345789999999999986 7777664322 45788999999999
Q ss_pred hHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCcccc--CCCCCcHHHHHHH
Q 012325 239 SLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVID--YPCVECTSASIQA 316 (466)
Q Consensus 239 L~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d--~~~~~~Ta~vl~a 316 (466)
|..+++. ..++++.+++|++||++.|++||+|....+ + +.+.|.. .+.+..||.+|.+
T Consensus 1026 l~~a~~~------~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~-----~---------~~~~m~gg~~~~~~lTAyvl~a 1085 (1451)
T 4acq_A 1026 FAQARAY------IFIDEAHITQALIWLSQRQKDNGCFRSSGS-----L---------LNNAIKGGVEDEVTLSAYITIA 1085 (1451)
T ss_dssp HHHHTTT------SCCCTHHHHHHHHHHHHTEETTTEECCCCC-----C---------SCGGGCCSCSCHHHHHHHHHHH
T ss_pred HHHhhhh------cccCHHHHHHHHHHHHhhcccCCcccccCc-----c---------cchhhcCCCCCCccchHHHHHH
Confidence 9887542 235688999999999999999999953211 1 1111111 2335689999999
Q ss_pred HHhhhhhCCCCchhhhHHHHHHHHHHHHHhccc--CCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHh
Q 012325 317 LTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL--DGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLS 394 (466)
Q Consensus 317 L~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~--DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~ 394 (466)
|...+.. .. .+.|++|++||+++... +|.. ....|..|.+..||..+|.. +..+.+++-|.+
T Consensus 1086 L~~~g~~--~~-----~~~i~~A~~~L~~~~~~~~~~~~-----~~~~y~~AllAyAlal~g~~----~~~~~~l~~L~~ 1149 (1451)
T 4acq_A 1086 LLEIPLT--VT-----HPVVRNALFCLESAWKTAQEGDH-----GSHVYTKALLAYAFALAGNQ----DKRKEVLKSLNE 1149 (1451)
T ss_dssp HHHTTCC--TT-----CHHHHHHHHHHHHHHHHHTSSCS-----SSTHHHHHHHHHHHHHHTCH----HHHHHHHHHHHH
T ss_pred HHHcCCC--CC-----CHHHHHHHHHHHHhhhhcccccc-----cCChHHHHHHHHHHHhcCCh----hHHHHHHHHHHH
Confidence 9998752 21 36899999999876321 1211 13478888888888888753 345567888888
Q ss_pred ccCCCCC---CCCcccccccc--cccCCCCCCCchhHHHHHHHHHHHcCCC----CchhHHHHHHHHHhccCC
Q 012325 395 KQRPSGG---WGESYLSCQKK--VYSNLEGDRSHVVNTAWAMLALIDAGQV----RINCCCSTLKVTLSLERE 458 (466)
Q Consensus 395 ~Q~~DGg---Wge~~~s~~~~--~y~~~~~~~s~~~~TA~ALlaL~~ag~~----~~~~i~rgv~~L~~~q~~ 458 (466)
....+|+ |++...++... .|.+ ......+..||||||+|+.++.. +.+.+.+.++||.++|+.
T Consensus 1150 ~a~~~~~~~~W~~~~~~~~~~~~~~~~-~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~ 1221 (1451)
T 4acq_A 1150 EAVKKDNSVHWERPQKPKAPVGHFYEP-QAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNA 1221 (1451)
T ss_dssp HCCBCSSCBCCCCCCCSSSCSSSTTCC-CTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCT
T ss_pred HhhccCCceecCCCCCCcccccccccc-CCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCC
Confidence 8777777 98765433221 1222 11234577899999999998742 345688999999998874
No 22
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.59 E-value=1.3e-14 Score=146.70 Aligned_cols=201 Identities=12% Similarity=0.039 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHhhccCCCceecc-ccccc--ccccccc---------Cccc------ccCCccccCCCCCcHHHHHHHHH
Q 012325 257 KRLYDSVNVIFSLQNADGGFATY-ELMRS--YPWLEVL---------NPAE------TFGDIVIDYPCVECTSASIQALT 318 (466)
Q Consensus 257 ~~i~~av~~Ll~~Qn~dGgw~~~-~~~~~--~~~l~~~---------~~~e------~fg~~~~d~~~~~~Ta~vl~aL~ 318 (466)
+..++..+.|+..|.++|||... +.... ..-...+ ++.+ .+. ....+...+.|+.+|.+|.
T Consensus 81 ~~A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~T~DnddTa~vl~aL~ 159 (408)
T 1r76_A 81 KAARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDW-HYVGTIDNDATVTEIRFLA 159 (408)
T ss_dssp HHHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCC-SSSSBCGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhccccc-CCCCCCCCchHHHHHHHHH
Confidence 45688899999999999999752 11110 0000000 0000 000 1122233567999999999
Q ss_pred hhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccc---------hHHHHHHHHHHccCCC----------
Q 012325 319 SFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTY---------GTWFGVKGLVAAGMNY---------- 379 (466)
Q Consensus 319 ~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y---------~T~~al~aL~~~g~~~---------- 379 (466)
.+.........+.+..++.||++||++.|.+||||+..+..+..| .|+-+|..|..++...
T Consensus 160 rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~ 239 (408)
T 1r76_A 160 QVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAI 239 (408)
T ss_dssp HHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhh
Confidence 876531100125677999999999999999999998766544333 3788888887776520
Q ss_pred --CCcHHHHHHHHHHHhccCC-CCCCCCcccccccccccCC-----CCCCCchhHHHHHHHHHHHcCCCCc---hhHHHH
Q 012325 380 --SNSSSIRKACEFLLSKQRP-SGGWGESYLSCQKKVYSNL-----EGDRSHVVNTAWAMLALIDAGQVRI---NCCCST 448 (466)
Q Consensus 380 --~~~~~i~ra~~~Ll~~Q~~-DGgWge~~~s~~~~~y~~~-----~~~~s~~~~TA~ALlaL~~ag~~~~---~~i~rg 448 (466)
...++++||++||++.|.+ ||.|---+.-|...++.|. +...-+..+|+++|+.||....++. +.|++|
T Consensus 240 ~~~~~~av~Rgi~~Ll~~Qe~~dGsw~rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~A 319 (408)
T 1r76_A 240 RTRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGG 319 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhcccCCcccchhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 2468999999999999999 9986522221211122210 1112246789999999999877532 369999
Q ss_pred HHHHHhccCC
Q 012325 449 LKVTLSLERE 458 (466)
Q Consensus 449 v~~L~~~q~~ 458 (466)
++||++.|.+
T Consensus 320 v~WL~s~Q~~ 329 (408)
T 1r76_A 320 VAWLNTSVIR 329 (408)
T ss_dssp HHHHHHSCCC
T ss_pred HHHHHHhhcC
Confidence 9999999864
No 23
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=2.5e-15 Score=176.07 Aligned_cols=172 Identities=13% Similarity=0.136 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHH
Q 012325 257 KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336 (466)
Q Consensus 257 ~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i 336 (466)
+.+++|+++|++||++||||++|+. ++++...|++|+.+|+.+.+..-.-. ...+
T Consensus 872 ~~i~~g~~rll~~q~~dGgf~~f~~---------------------~~~s~~lTa~v~~~l~~a~~~~~~v~----~~~l 926 (1325)
T 2pn5_A 872 NLLRQGYQNQMRYRQTDGSFGLWET---------------------TNGSVFLTAFVGTSMQTAVKYISDID----AAMV 926 (1325)
T ss_dssp HHHHHHHHHHGGGBCTTSCBCSSSS---------------------SCCCHHHHHHHHHHHHHHTTTCSCSC----HHHH
T ss_pred HHHHHHHHHHHhcCCCCCCeeccCC---------------------CCCCeeehHHHHHHHHHHHhhEEcCC----HHHH
Confidence 4588899999999999999998753 23557789999999999865321011 3689
Q ss_pred HHHHHHHHHhcccCCCccccCCCc----------ccchHHHHHHHHHHccCCC-CCcHHHHHHHHHHHhccCC-CCCCCC
Q 012325 337 KRAVKFIEKIQELDGSWYGSWGVC----------FTYGTWFGVKGLVAAGMNY-SNSSSIRKACEFLLSKQRP-SGGWGE 404 (466)
Q Consensus 337 ~ra~~~L~~~Q~~DG~W~g~wg~~----------~~Y~T~~al~aL~~~g~~~-~~~~~i~ra~~~Ll~~Q~~-DGgWge 404 (466)
++|++||.+.|++||+|.+.|+.. ..+.|+++|.+|...|... ...+.+++|++||.++|+. +++|+.
T Consensus 927 ~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~ 1006 (1325)
T 2pn5_A 927 EKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDL 1006 (1325)
T ss_dssp HHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHH
T ss_pred HHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHH
Confidence 999999999999999998876532 2456789999998776431 1346799999999999887 888987
Q ss_pred cccccc-----------------------c---ccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 405 SYLSCQ-----------------------K---KVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 405 ~~~s~~-----------------------~---~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
...+|. + ..|+ ...|++.+||||||+|+.++. .+.+.++++||+++|+.
T Consensus 1007 a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w---~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~ 1081 (1325)
T 2pn5_A 1007 SIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFW---NTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYV 1081 (1325)
T ss_dssp HHHHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEEC---CSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccC---CCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCC
Confidence 654321 0 1222 124677899999999999875 45789999999987765
No 24
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.56 E-value=1.5e-14 Score=163.63 Aligned_cols=174 Identities=18% Similarity=0.115 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHH
Q 012325 257 KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336 (466)
Q Consensus 257 ~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i 336 (466)
+.+++|+.+|+++|++||||++|.. ++++...|++|+.+|+.+....... ...+
T Consensus 299 ~~i~~g~~rll~~Q~~DGsfs~w~~---------------------~~~s~wlTAyv~~~l~~a~~~~~v~-----~~~i 352 (915)
T 2hr0_B 299 ELIKKGYTQQLAFRQPSSAFAAFVK---------------------RAPSTWLTAYVVKVFSLAVNLIAID-----SQVL 352 (915)
T ss_dssp HHHHHHHHHHGGGCCTTTCCBSSSS---------------------SCBCHHHHHHHHHHHHTTTTTSCCC-----HHHH
T ss_pred HHHHHHHHHHHHhhcCCCCccccCC---------------------CCCcceehHHHHHHHHHhhhcCCCC-----HHHH
Confidence 4678899999999999999998753 2345678999999999987532111 4789
Q ss_pred HHHHHHHHH-hcccCCCccccCCCc--------------ccchHHHHHHHHHHccCC-----CCCcHHHHHHHHHHHhcc
Q 012325 337 KRAVKFIEK-IQELDGSWYGSWGVC--------------FTYGTWFGVKGLVAAGMN-----YSNSSSIRKACEFLLSKQ 396 (466)
Q Consensus 337 ~ra~~~L~~-~Q~~DG~W~g~wg~~--------------~~Y~T~~al~aL~~~g~~-----~~~~~~i~ra~~~Ll~~Q 396 (466)
++|++||.+ .|.+||+|.+.|++. ..+.|++++.+|..+|.. ...++.+++|++||.+++
T Consensus 353 ~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~ 432 (915)
T 2hr0_B 353 CGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANY 432 (915)
T ss_dssp HHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhh
Confidence 999999995 999999998877542 245689999999998642 134678999999999987
Q ss_pred CC-CCCCCCcccc-------------------cc-cccccCCCCC-CCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 012325 397 RP-SGGWGESYLS-------------------CQ-KKVYSNLEGD-RSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLS 454 (466)
Q Consensus 397 ~~-DGgWge~~~s-------------------~~-~~~y~~~~~~-~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~ 454 (466)
.. +++|+....+ .. +..|....++ .+++.+||||||+|++++.. +.+.++++||.+
T Consensus 433 ~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~ 510 (915)
T 2hr0_B 433 MNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNE 510 (915)
T ss_dssp GGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHT
T ss_pred hccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHh
Confidence 65 2323221111 00 1222211111 12577899999999999863 569999999999
Q ss_pred ccCC
Q 012325 455 LERE 458 (466)
Q Consensus 455 ~q~~ 458 (466)
+|+.
T Consensus 511 qq~~ 514 (915)
T 2hr0_B 511 QRYY 514 (915)
T ss_dssp CCCS
T ss_pred cccC
Confidence 9865
No 25
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.56 E-value=8.7e-14 Score=157.27 Aligned_cols=222 Identities=17% Similarity=0.094 Sum_probs=149.6
Q ss_pred CCcchHHHHHHHHHhcCCc----h----hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchh
Q 012325 160 SQLWDTAFAVQAIISTNLV----E----EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDC 231 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~----~----~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~ 231 (466)
+...=..+++..|.+.+.- + +....|++++++|++.|+.| |||++... ..++.+.
T Consensus 268 s~~~P~l~~~~yL~~~~q~~~~~~~~~~~a~~~i~~g~~rll~~Q~~D---------------Gsfs~w~~--~~~s~wl 330 (915)
T 2hr0_B 268 IGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPS---------------SAFAAFVK--RAPSTWL 330 (915)
T ss_dssp GGTHHHHHHHHHHHHTTCHHHHCTHHHHHHHHHHHHHHHHHGGGCCTT---------------TCCBSSSS--SCBCHHH
T ss_pred HhhhhHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHhhcCC---------------CCccccCC--CCCccee
Confidence 3444455666677776531 1 22356888999999999986 66666543 3468899
Q ss_pred hHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHh-hccCCCceeccccccccccccccCcccccCCcccc-CCCCCc
Q 012325 232 TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNADGGFATYELMRSYPWLEVLNPAETFGDIVID-YPCVEC 309 (466)
Q Consensus 232 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~-~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d-~~~~~~ 309 (466)
||.++++|..+.+. + .++...+++|++||.+ .|++||+|.....-. ...+ -|..-.. .+.+..
T Consensus 331 TAyv~~~l~~a~~~-----~-~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~----~~~m-----~gg~~~~~~~~~~l 395 (915)
T 2hr0_B 331 TAYVVKVFSLAVNL-----I-AIDSQVLCGAVKWLILEKQKPDGVFQEDAPVI----HQEM-----IGGLRNNNEKDMAL 395 (915)
T ss_dssp HHHHHHHHHTTTTT-----S-CCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCS----SSCC-----CCSCCCCTTHHHHH
T ss_pred hHHHHHHHHHhhhc-----C-CCCHHHHHHHHHHHHHhhccCCCccccCcccc----chhh-----cCCccCcccccccc
Confidence 99999999877531 1 3567899999999995 999999996422100 0000 0110000 123557
Q ss_pred HHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhccc---------------------------------CCCcccc
Q 012325 310 TSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL---------------------------------DGSWYGS 356 (466)
Q Consensus 310 Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~---------------------------------DG~W~g~ 356 (466)
|+.+|.+|...+..... ......+.|++|++||.+.++. +|.|...
T Consensus 396 tAyvl~aL~~~g~~~~~-~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~w~~ 474 (915)
T 2hr0_B 396 TAFVLISLQEAKDICEE-QVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWED 474 (915)
T ss_dssp HHHHHHHHHHHTTTSTT-TCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTBCCC
T ss_pred HHHHHHHHHhccccccc-CcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCCCC
Confidence 89999999988642100 0122357899999999987654 3433222
Q ss_pred CCCc--ccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHH
Q 012325 357 WGVC--FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLAL 434 (466)
Q Consensus 357 wg~~--~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL 434 (466)
++.. .+..|++||.+|.+.+.. +.+.++++||++.|+.+|||+++ -.|+.||.||
T Consensus 475 ~~~~~~~ve~TayaLlall~~~~~----~~~~~~v~wL~~qq~~~Ggw~ST-------------------QdT~~Al~AL 531 (915)
T 2hr0_B 475 PGKQLYNVEATSYALLALLQLKDF----DFVPPVVRWLNEQRYYGGGYGST-------------------QATFMVFQAL 531 (915)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCT----TTHHHHHHHHHTCCCSSSSCCSH-------------------HHHHHHHHHH
T ss_pred CCCCccchHHHHHHHHHHHhcCCh----hhHHHHHHHHHhcccCCCCccch-------------------hhHHHHHHHH
Confidence 3322 456799999999998754 45889999999999999999753 3589999999
Q ss_pred HHc
Q 012325 435 IDA 437 (466)
Q Consensus 435 ~~a 437 (466)
...
T Consensus 532 ~~y 534 (915)
T 2hr0_B 532 AQY 534 (915)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 26
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.53 E-value=3.2e-15 Score=147.10 Aligned_cols=158 Identities=12% Similarity=0.120 Sum_probs=101.4
Q ss_pred CCCcchHHHHHHHHHhcCC---chhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHH
Q 012325 159 GSQLWDTAFAVQAIISTNL---VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEG 235 (466)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag~---~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~a 235 (466)
..+..||+.++++|..... .+.+++++.||++||+++|.++ |+|..+++.. ++| ... -.+-| |.|+.+
T Consensus 70 t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~n---GGWpqFdpd~--~~Y--l~~-IpFnD-Dvtarv 140 (332)
T 1gxm_A 70 TIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYST---GALPQFYPLK--GGY--SDH-ATFND-NGMAYA 140 (332)
T ss_dssp ECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTT---SCCBSEESCC--SGG--GGS-EECGG-GHHHHH
T ss_pred CccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCC---CCccccCCCc--ccc--ccc-CCcch-HHHHHH
Confidence 5788899999999987533 3457899999999999999986 4444443321 111 000 00233 889999
Q ss_pred HHHhHhhhcccccccC-------CccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCC
Q 012325 236 LKASLLLSKLSSAIVG-------EPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVE 308 (466)
Q Consensus 236 l~aL~~~~~~~~~~~g-------~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~ 308 (466)
|+.|..+......+.+ .....++++||++||++.|.++||| |+.|..+| .+
T Consensus 141 LelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw--------------------~g~Wg~qy--dy 198 (332)
T 1gxm_A 141 LTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGV--------------------LTVWCAQH--GA 198 (332)
T ss_dssp HHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTE--------------------ECCCCSEE--CT
T ss_pred HHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCC--------------------cCeecccc--cc
Confidence 9999887532111100 0224578999999999999999999 33444433 22
Q ss_pred cHHH----------HHHHHHhhhh-----hCCCCchhhhHHHHHHHHHHHHHhccc
Q 012325 309 CTSA----------SIQALTSFKK-----LYPGHWQEDVDHCIKRAVKFIEKIQEL 349 (466)
Q Consensus 309 ~Ta~----------vl~aL~~~~~-----~~~~~~~~~i~~~i~ra~~~L~~~Q~~ 349 (466)
.|.. +|.++..++. ..|. .++|..+|++|++||+++|++
T Consensus 199 gT~~Pa~ARayE~psL~~~es~giv~~LM~~~~--~~~v~~aI~~Av~WL~~~q~~ 252 (332)
T 1gxm_A 199 LDYQPKKARAYELESLSGSESVGVLAFLMTQPQ--TAEIEQAVRAGVAWFNSPRTY 252 (332)
T ss_dssp TTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCC--CHHHHHHHHHHHHHHTCTTTS
T ss_pred ccccccccccccccchhHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHhcccc
Confidence 2222 2222222211 1233 367788999999999999983
No 27
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=1.6e-12 Score=152.34 Aligned_cols=216 Identities=12% Similarity=0.067 Sum_probs=146.3
Q ss_pred CCcchHHHHHHHHHhcCCc-h----hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHH
Q 012325 160 SQLWDTAFAVQAIISTNLV-E----EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSE 234 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~-~----~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~ 234 (466)
+...=..++...|.+++.- + +....|++|+++|+++|+.| |||++... ..++.+.||.
T Consensus 844 s~~~p~~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~~q~~d---------------Ggf~~f~~--~~~s~~lTa~ 906 (1325)
T 2pn5_A 844 VKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTD---------------GSFGLWET--TNGSVFLTAF 906 (1325)
T ss_dssp GGTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGGGBCTT---------------SCBCSSSS--SCCCHHHHHH
T ss_pred HHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCC---------------CCeeccCC--CCCCeeehHH
Confidence 3344445566666666632 2 23456889999999999986 77776643 3478899999
Q ss_pred HHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHH
Q 012325 235 GLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASI 314 (466)
Q Consensus 235 al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl 314 (466)
++++|..+.+. +..++.+.+++|++||.+.|++||+|..-...... +..|.+ + .....|+.+|
T Consensus 907 v~~~l~~a~~~-----~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~---------~~~g~~--~-~~~~~tayvl 969 (1325)
T 2pn5_A 907 VGTSMQTAVKY-----ISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHK---------EMQGGL--R-NGVALTSYVL 969 (1325)
T ss_dssp HHHHHHHHTTT-----CSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCH---------HHHCCS--S-TTHHHHHHHH
T ss_pred HHHHHHHHHhh-----EEcCCHHHHHHHHHHHHhhhccCCCccccccccCh---------hhcCcc--c-CCccccHHHH
Confidence 99999887542 23456789999999999999999999421100000 001111 1 1244678888
Q ss_pred HHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhccc-CCCccc-----------------------------------cCC
Q 012325 315 QALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL-DGSWYG-----------------------------------SWG 358 (466)
Q Consensus 315 ~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-DG~W~g-----------------------------------~wg 358 (466)
.+|...+.... +....|++|++||.++|+. ++.|.. .|.
T Consensus 970 ~aL~~~g~~~~-----~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w~ 1044 (1325)
T 2pn5_A 970 MALLENDIAKA-----KHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFWN 1044 (1325)
T ss_dssp HHHHTCHHHHH-----HTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEECC
T ss_pred HHHhhCccccc-----ccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccCC
Confidence 88887654211 1135789999999998776 565521 010
Q ss_pred -CcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHc
Q 012325 359 -VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDA 437 (466)
Q Consensus 359 -~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~a 437 (466)
...+-.|++||.||...+. .+.+.+.++||++.|+.+|||.++ -.|++||+||...
T Consensus 1045 ~~s~ve~tA~aLlall~~~~----~~~~~~~v~wL~~q~~~~g~w~sT-------------------q~T~~aL~AL~~y 1101 (1325)
T 2pn5_A 1045 TTNPIETTAYALLSFVMAEK----YTDGIPVMNWLVNQRYVTGSFPST-------------------QDTFVGLKALTKM 1101 (1325)
T ss_dssp SSSHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCCTTSSCSSH-------------------HHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhhhcc----chhhHHHHHHHHhccCCCCCccch-------------------HHHHHHHHHHHHH
Confidence 1122247899999998764 357789999999999999999752 3689999999764
No 28
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.32 E-value=1e-10 Score=118.87 Aligned_cols=267 Identities=17% Similarity=0.159 Sum_probs=155.4
Q ss_pred hHHHhhhhccccC-CCcHHHHHHHHhhhcceeee--C-CCceeec--------CCCCCcchHHHHHHHHHhcCCc--hhh
Q 012325 116 NKVLNMLCCWVED-PNSEAFKLHIPRINDYLWIA--E-DGMKVQG--------YNGSQLWDTAFAVQAIISTNLV--EEY 181 (466)
Q Consensus 116 ~~~l~~l~~~~~~-p~~~~~~~~~~~l~~~~~~~--~-~G~~~q~--------~~~s~vwDTa~a~~AL~~ag~~--~~~ 181 (466)
+-+|+.|.+.+.. ......++.+++|....... + +|+...+ ...+.+.-|=+|+++|.-.|-. +.+
T Consensus 36 Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~v 115 (390)
T 3dra_B 36 YFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTII 115 (390)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTC
T ss_pred HHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccc
Confidence 3345555555433 23344567777876642221 1 2333221 1247788999999999887643 111
Q ss_pred HHHHHHHHHHHHhccccCCC-CCCcccccCCCCCCCCCCcc--C--C-----CCCCCchh--hHHHHHHhHhhhc-cccc
Q 012325 182 GATLKKAHKYIKDSQVLEDC-PGNLDFWYRHISKGAWPFST--A--D-----HGWPISDC--TSEGLKASLLLSK-LSSA 248 (466)
Q Consensus 182 ~~~l~~a~~wL~~~Q~~~~~-~Gdw~~~~~~~~~GGW~f~~--~--~-----~~~pd~D~--Ta~al~aL~~~~~-~~~~ 248 (466)
+ -++.++||.+.|.++.+ . |++.... . + .+-.|+-- .|.++..|+.... .++.
T Consensus 116 d--r~~i~~~l~~lQ~~~~~~d------------GsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~ 181 (390)
T 3dra_B 116 N--RKKIMNFLCKCQVKDGINK------------GGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNN 181 (390)
T ss_dssp C--HHHHHHHHHHHBCCSSTTT------------TCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC------
T ss_pred c--HHHHHHHHHHHhCCCCCCC------------CceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccc
Confidence 1 35678899999983211 1 4444221 0 1 12123322 3333333322111 0000
Q ss_pred ccC-CccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCC
Q 012325 249 IVG-EPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGH 327 (466)
Q Consensus 249 ~~g-~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~ 327 (466)
-.. .-.....++++++||+++|+-||||+.-. + .-++...|..+|.+|..++...
T Consensus 182 ~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p----------------~-----~EsH~G~TfCalaaL~lL~~~~--- 237 (390)
T 3dra_B 182 NREDSNETDIDLISLQQFILDRININGGFSSTI----------------M-----DESHLGFTFCAIASLKLLNYPL--- 237 (390)
T ss_dssp -------CCCCHHHHHHHHHTTBCTTSCBCSST----------------T-----SCCCHHHHHHHHHHHHHTTCCG---
T ss_pred cccccccccccHHHHHHHHHHhcCCCCCcCCCC----------------C-----cccccchhHHHHHHHHHhCccc---
Confidence 000 00112347899999999999999997421 1 1133445777888888887531
Q ss_pred chhhhHHHHHHHHHHHHHhcc----------------------------cCCCccccCCC-cccchHHHHHHHHHHccCC
Q 012325 328 WQEDVDHCIKRAVKFIEKIQE----------------------------LDGSWYGSWGV-CFTYGTWFGVKGLVAAGMN 378 (466)
Q Consensus 328 ~~~~i~~~i~ra~~~L~~~Q~----------------------------~DG~W~g~wg~-~~~Y~T~~al~aL~~~g~~ 378 (466)
..+.+.++||..+|. ++|||.||..- ..+=-++|++.+|...+..
T Consensus 238 ------~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~ 311 (390)
T 3dra_B 238 ------EKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVN 311 (390)
T ss_dssp ------GGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGG
T ss_pred ------ccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhccc
Confidence 236788999999997 57999887641 1222278888888887731
Q ss_pred CCCcHHHHHHHHHHHhc-cCC-CCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcC
Q 012325 379 YSNSSSIRKACEFLLSK-QRP-SGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAG 438 (466)
Q Consensus 379 ~~~~~~i~ra~~~Ll~~-Q~~-DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag 438 (466)
...--..++..+||+++ |++ .||++.. ++..+++.+|.++|.+|...+
T Consensus 312 ~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~------------Pg~~pD~yHT~~gLagLsl~~ 361 (390)
T 3dra_B 312 FIKLVDLNKAEDYLLNKTQNQLFGGFGRD------------PDSTPDPMHSYLALASLSLWN 361 (390)
T ss_dssp GGGGSCHHHHHHHHHHTTBCTTTCSBCSS------------TTSCCCHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhccCCCCCCcCCC------------CCCCCchHHHHHHHHHHHHcC
Confidence 00111245678999997 565 8998763 256789999999998887664
No 29
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.24 E-value=4.7e-11 Score=140.33 Aligned_cols=116 Identities=15% Similarity=0.116 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHH
Q 012325 257 KRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336 (466)
Q Consensus 257 ~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i 336 (466)
..|++|++||+++|++||||++|+..++ -++++...||+|+.+|+.+++..... +..+
T Consensus 983 ~~i~~g~~~ll~~q~~dGgf~~f~~~~~-----------------~~~~s~wlTAyv~~~l~~a~~~~~v~-----~~~l 1040 (1451)
T 4acq_A 983 GYLNTGYQRQLNYKHYDGSYSTFGERYG-----------------RNQGNTWLTAFVLKTFAQARAYIFID-----EAHI 1040 (1451)
T ss_dssp HHHHHHHHHHGGGBCTTSCBCSSTTGGG-----------------CCCCCHHHHHHHHHHHHHHTTTSCCC-----THHH
T ss_pred HHHHHHHHHHHhhcCCCCCeeeccCCCC-----------------CCCCchhHHHHHHHHHHHhhhhcccC-----HHHH
Confidence 3478999999999999999999864210 02345678999999999987543211 3789
Q ss_pred HHHHHHHHHhcccCCCcccc--C-------CC-cccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhc
Q 012325 337 KRAVKFIEKIQELDGSWYGS--W-------GV-CFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSK 395 (466)
Q Consensus 337 ~ra~~~L~~~Q~~DG~W~g~--w-------g~-~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~ 395 (466)
++|++||+++|++||+|.+. | |. ..+|.||++|.||..+|.. ..++.+++|++||.++
T Consensus 1041 ~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~-~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1041 TQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLT-VTHPVVRNALFCLESA 1108 (1451)
T ss_dssp HHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCC-CCCHHHHHHHHHHHHh
Confidence 99999999999999999843 3 11 4578899999999999987 5789999999999875
No 30
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=2.2e-10 Score=116.30 Aligned_cols=189 Identities=16% Similarity=0.136 Sum_probs=129.5
Q ss_pred hHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCC----CceeccccccccccccccCcccccCCccccCCCC
Q 012325 232 TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNAD----GGFATYELMRSYPWLEVLNPAETFGDIVIDYPCV 307 (466)
Q Consensus 232 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~d----Ggw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~ 307 (466)
.=.+|.+|..++.. ....+..++-++||.++|.++ |||+...... +...-.+.+++
T Consensus 35 ~Yw~l~~L~lLg~~-------~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~-------------~~g~~~~~~hl 94 (390)
T 3dra_B 35 IYFCLHGLQLIQKF-------QFTNQELIYYRNFIINQFMIENNQIISFRSTHYFQ-------------KTNQKYDCPNL 94 (390)
T ss_dssp HHHHHHHHHHTTCC-------CCCHHHHHHHHHHHHHHHEEECSSCEEECSSGGGG-------------GSCTTTSCCBH
T ss_pred HHHHHHHHHHhCCC-------ccchHHHHHHHHHHHHHhccccCCCCCcCCCccCC-------------CCCCccCcccH
Confidence 33455566555431 112444567799999998663 8887532100 11101244667
Q ss_pred CcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcc---c-CCCcc-----c-------cCCCcccchHHHHHHH
Q 012325 308 ECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQE---L-DGSWY-----G-------SWGVCFTYGTWFGVKG 371 (466)
Q Consensus 308 ~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~---~-DG~W~-----g-------~wg~~~~Y~T~~al~a 371 (466)
..|-.+|..|..++.. .. +.|+ .++-++||.+.|+ + ||||. + .+|...+-.+..|+..
T Consensus 95 ~~Ty~Al~~L~ilg~~--~~--~~vd--r~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i 168 (390)
T 3dra_B 95 SSTLFALYNLLILKSP--YH--TIIN--RKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLI 168 (390)
T ss_dssp HHHHHHHHHHHHTTCC--GG--GTCC--HHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch--hh--cccc--HHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHH
Confidence 7899999999998752 00 1122 3567889999998 6 89997 2 2666666667777777
Q ss_pred HHHccCCCC-----------CcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCC
Q 012325 372 LVAAGMNYS-----------NSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQV 440 (466)
Q Consensus 372 L~~~g~~~~-----------~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~ 440 (466)
+...+.... ....++++++||+++|+.|||++.. ++..|+...|..||-+|...+..
T Consensus 169 ~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~------------p~~EsH~G~TfCalaaL~lL~~~ 236 (390)
T 3dra_B 169 RHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSST------------IMDESHLGFTFCAIASLKLLNYP 236 (390)
T ss_dssp HHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSS------------TTSCCCHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCC------------CCcccccchhHHHHHHHHHhCcc
Confidence 777665510 0345789999999999999999985 25678888999999999988876
Q ss_pred CchhHHHHHHHHHhccCCc
Q 012325 441 RINCCCSTLKVTLSLEREF 459 (466)
Q Consensus 441 ~~~~i~rgv~~L~~~q~~~ 459 (466)
. ..+++-++||.++|-.+
T Consensus 237 ~-~d~~~l~~WL~~RQ~~~ 254 (390)
T 3dra_B 237 L-EKLKSTKEWLIHRQVDY 254 (390)
T ss_dssp G-GGCHHHHHHHHTTBCCC
T ss_pred c-ccHHHHHHHHHHcCccc
Confidence 3 45889999999999754
No 31
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=99.16 E-value=3.5e-09 Score=117.54 Aligned_cols=253 Identities=17% Similarity=0.072 Sum_probs=159.3
Q ss_pred CCcchHHHHHHHHHhcCC----chh----hHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchh
Q 012325 160 SQLWDTAFAVQAIISTNL----VEE----YGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDC 231 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~----~~~----~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~ 231 (466)
+...-+.+++.+|.+++. .++ ....|+++++=|++.|+.| |||++... ..++...
T Consensus 337 s~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~D---------------Gsfs~w~~--~~~s~wL 399 (767)
T 4fxk_B 337 IYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKAD---------------GSYAAWLS--RDSSTWL 399 (767)
T ss_dssp GGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTT---------------SCBBSSSS--SCBCHHH
T ss_pred HhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCC---------------CCcccCCC--CCCCchh
Confidence 445556788888888764 222 2234788888888888876 55555432 2357899
Q ss_pred hHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHH
Q 012325 232 TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTS 311 (466)
Q Consensus 232 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta 311 (466)
||.|++.|..+.+. ..++.+.+.+++.||+..|.+||.|..... .+.+.+ -|....+...+..||
T Consensus 400 TAyV~~~l~~A~~~------i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~----~~~~~~-----~gg~~~~~~~~~ltA 464 (767)
T 4fxk_B 400 TAFVLKVLSLAQEQ------VGGSPEKLQETSNWLLSQQQADGSFQDPCP----VLDRSM-----QGGLVGNDETVALTA 464 (767)
T ss_dssp HHHHHHHHHHTCSS------SSCCHHHHHHHHHHHHHTBCTTSCBCCSSC----SCCCCC-----CSSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh------cCcchHHHHHHHHHHHHhhhhcccchhcch----hcchhh-----cCCcCCCccchhHHH
Confidence 99999999887542 135678899999999999999999964211 111111 111111112356799
Q ss_pred HHHHHHHhhhhhCCCC----chhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHH
Q 012325 312 ASIQALTSFKKLYPGH----WQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRK 387 (466)
Q Consensus 312 ~vl~aL~~~~~~~~~~----~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~r 387 (466)
.++.+|...+...... -...+...|.||++||.+....+ ....|+.+.+..||..++.. ......
T Consensus 465 yvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~--------~~~~y~~Al~ayaL~l~~~~---~~~~~~ 533 (767)
T 4fxk_B 465 FVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAG--------LLGAHAAAITAYALSLTKAP---VDLLGV 533 (767)
T ss_dssp HHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSC--------CCCHHHHHHHHHHHHHHTCT---THHHHH
T ss_pred HHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcc--------cCCHHHHHHHHHHHHHcCCc---HHHHHH
Confidence 9999998876543221 12345678999999998875332 23478888877888887754 344555
Q ss_pred HHHHHHhccCCCCC---CCCccccccc-----------ccccCCCCCCC-chhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012325 388 ACEFLLSKQRPSGG---WGESYLSCQK-----------KVYSNLEGDRS-HVVNTAWAMLALIDAGQVRINCCCSTLKVT 452 (466)
Q Consensus 388 a~~~Ll~~Q~~DGg---Wge~~~s~~~-----------~~y~~~~~~~s-~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L 452 (466)
+.+-|.+....+|+ |.....+... ..+.+ ...| .+..||||||+++... .+.+.+.+.++||
T Consensus 534 ~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~VEttayaLla~l~~~-~~~~~a~~iv~WL 610 (767)
T 4fxk_B 534 AHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMP--QAPALWIETTAYALLHLLLHE-GKAEMADQASAWL 610 (767)
T ss_dssp HHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBC--CCCHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHH
T ss_pred HHHHHHhhcEEcCCeeEEeccCCCccccccccccccccccccc--ccchHHHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 66667665544433 5432211100 00111 1122 2556899999998764 2456688999999
Q ss_pred HhccCC
Q 012325 453 LSLERE 458 (466)
Q Consensus 453 ~~~q~~ 458 (466)
.++++.
T Consensus 611 ~~Qr~~ 616 (767)
T 4fxk_B 611 TRQGSF 616 (767)
T ss_dssp HHTCCT
T ss_pred HHhhcC
Confidence 988874
No 32
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=99.00 E-value=1.5e-09 Score=110.49 Aligned_cols=108 Identities=15% Similarity=0.077 Sum_probs=81.4
Q ss_pred CCCcHHHHHHHHHhhhhhCCCCc--hhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCC-c
Q 012325 306 CVECTSASIQALTSFKKLYPGHW--QEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSN-S 382 (466)
Q Consensus 306 ~~~~Ta~vl~aL~~~~~~~~~~~--~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~-~ 382 (466)
++|.||.+++||.-+++.. .++ ...|+.+++..+++|.+.|++||+|+ .+|.|+.|++||.+.+..+.. .
T Consensus 177 sVDT~AMA~lAL~C~~~~~-~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG------N~~ST~lA~QAL~~~~~~~~~~~ 249 (414)
T 2bb6_A 177 SVDTMAMAGMAFSCLELSN-LNPKQRNRINLALKRVQEKILKAQTPEGYFG------NVYSTPLALQLLMGSLRPSVELG 249 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTBCTTSCBS------STTTHHHHHHHHTTCSSCCHHHH
T ss_pred cccHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHhhcCCCCcc------chhhHHHHHHHHHhcCCCccccc
Confidence 3789999999999998642 221 12333444444477888899999985 488999999999999886221 1
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCC
Q 012325 383 SSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQV 440 (466)
Q Consensus 383 ~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~ 440 (466)
....+++++|++ |.+||+|+. +..|+-+|.+|...++.
T Consensus 250 w~~~~a~~~Ll~-q~~dG~F~n-------------------p~ataQ~lpaL~gkty~ 287 (414)
T 2bb6_A 250 TACLKAKAALQA-SLQHKTFQN-------------------PLMISQLLPVLNQKSYV 287 (414)
T ss_dssp HHHHHHHHHHHH-HHTTTCCCS-------------------HHHHHHHHHHTTTCCGG
T ss_pred chHHHHHHHHHH-hccCCCCCC-------------------hHHHHHHHHHhcCCCcc
Confidence 367789999999 999999852 56899999999876654
No 33
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.97 E-value=2e-09 Score=108.81 Aligned_cols=128 Identities=15% Similarity=0.099 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhh---hCCCCc-hhhhH
Q 012325 258 RLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKK---LYPGHW-QEDVD 333 (466)
Q Consensus 258 ~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~---~~~~~~-~~~i~ 333 (466)
.-.+.|.-|+..|+.||++ | ++|.+|.+++||.-++. .....+ +..|.
T Consensus 131 v~~~~v~kLl~~~~~~g~~--------------------~--------sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~ 182 (399)
T 2pmv_A 131 ATLPIAVRFAKTLLANSSP--------------------F--------NVDTGAMATLALTCMYNKIPVGSEEGYRSLFG 182 (399)
T ss_dssp HHHHHHHHHHHHHHHCCSC--------------------C--------CHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCc--------------------c--------cchHHHHHHHHHHHHhhccccccchhhHHHHH
Confidence 3455667788888888754 2 27789999999998876 221112 35688
Q ss_pred HHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcH-HHHHHHHHHHhccCCCCCCCCcccccccc
Q 012325 334 HCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSS-SIRKACEFLLSKQRPSGGWGESYLSCQKK 412 (466)
Q Consensus 334 ~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~-~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~ 412 (466)
.+|++++++|.+.|++||+|+ .+|.|+.|++||.+.+.. ...+ ...+++++|++ |.+||+|+.
T Consensus 183 ~ai~~~~~~l~~~q~~dG~fG------n~yST~LA~QAL~~~~~~-~~~~W~c~~al~~l~~-q~~~G~F~n-------- 246 (399)
T 2pmv_A 183 QVLKDIVEKISMKIKDNGIIG------DIYSTGLAMQALSVTPEP-SKKEWNCKKTTDMILN-EIKQGKFHN-------- 246 (399)
T ss_dssp HHHHHHHHHHTTSBCTTSCBS------SHHHHHHHHHHHHHCSSC-CSSCCCHHHHHHHHHH-HHTTTTTCS--------
T ss_pred HHHHHHHHHHHHhhcCCCccc------ccccHHHHHHHHHhcCCC-ccccccHHHHHHHHHH-HhhCCCcCC--------
Confidence 999999999999999999996 499999999999999885 2334 78899999999 999999853
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHcCCC
Q 012325 413 VYSNLEGDRSHVVNTAWAMLALIDAGQV 440 (466)
Q Consensus 413 ~y~~~~~~~s~~~~TA~ALlaL~~ag~~ 440 (466)
+..||-+|.+|...++.
T Consensus 247 -----------p~~taQilPaL~~ktyl 263 (399)
T 2pmv_A 247 -----------PMSIAQILPSLKGKTYL 263 (399)
T ss_dssp -----------HHHHHHHHHHHTTCCGG
T ss_pred -----------HHHHHHHHHHhcCCCcc
Confidence 57889999999877664
No 34
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.96 E-value=2.3e-08 Score=119.50 Aligned_cols=236 Identities=18% Similarity=0.108 Sum_probs=149.6
Q ss_pred CcchHHHHHHHHHhcCCc----h----hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhh
Q 012325 161 QLWDTAFAVQAIISTNLV----E----EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCT 232 (466)
Q Consensus 161 ~vwDTa~a~~AL~~ag~~----~----~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~T 232 (466)
...=..+++..|.+.+.- . +....|+.+++=+++.|..| |||++... ..++...|
T Consensus 1016 ~~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~~d---------------Gsfs~w~~--~~~s~wLT 1078 (1661)
T 2b39_A 1016 GMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKS---------------SAYAAFQY--RPPSTWLT 1078 (1661)
T ss_dssp GTHHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBCTT---------------SCBCSSTT--SCCCHHHH
T ss_pred hcccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhcCC---------------CCccccCC--CCCchhhh
Confidence 334445566666666531 1 12345777888888888876 56655432 34678999
Q ss_pred HHHHHHhHhhhcccccccCCccchHHHHHHHHHHHh-hccCCCceeccccccccccccccCcccccCCccc-cCCCCCcH
Q 012325 233 SEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNADGGFATYELMRSYPWLEVLNPAETFGDIVI-DYPCVECT 310 (466)
Q Consensus 233 a~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~-~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~-d~~~~~~T 310 (466)
|.+++.|..+.+. + .+++..+.+|++||.+ .|+.||.|..-.. -+.+.+ -|.... ..+.+..|
T Consensus 1079 Ayv~~~l~~A~~~-----~-~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~----~~~~~~-----~gg~~~~~~~~~~lt 1143 (1661)
T 2b39_A 1079 AYVVKVFALAANL-----I-AIDSKDLCETVKWLILEKQKPDGIFQEDGP----VIHQEM-----IGGFRDTREKDVSLT 1143 (1661)
T ss_dssp HHHHHHHHHHTTT-----S-CCCHHHHHHHHHHHHHHTBCTTSCBCCCSC----CCCTTS-----CCCTTCCTTSSHHHH
T ss_pred HHHHHHHHhhhhc-----c-cCCHHHHHHHHHHhhHhhCCCCCccccccc----eechhh-----cCCccccccCccccH
Confidence 9999999887642 1 4678899999999995 9999999953110 000000 011000 11134468
Q ss_pred HHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHH
Q 012325 311 SASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACE 390 (466)
Q Consensus 311 a~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~ 390 (466)
+.++.+|...+.... .....+...|++|++||.++... + ...|+.+.+..||..+|.. .++.++
T Consensus 1144 Ayvl~aL~~~~~~~~-~~~~~~~~~i~~a~~yL~~~~~~---~------~~~y~~A~layAL~l~g~~------a~~~l~ 1207 (1661)
T 2b39_A 1144 AFVLIALHEAKDICE-AQVNSLGRSIAKAGDFLENHYRE---L------RRPYTVAIAAYALALLGKL------EGDRLT 1207 (1661)
T ss_dssp HHHHHHHHHTTTTTT-TTCSSHHHHHHHHHHHHHHHTTT---C------CSHHHHHHHHHHHHHTTCC------CHHHHH
T ss_pred HHHHHHHHhcccccc-ccCcchhHHHHHHHHHHHHhhhc---c------CCHHHHHHHHHHHHHcCCc------HHHHHH
Confidence 999999988754210 01123457899999999876432 1 2468888888888888753 245567
Q ss_pred HHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 391 FLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 391 ~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
.|.+.......|.... +....+..|||||++|+..+. .+.+.+.++||.++++.
T Consensus 1208 ~L~~~~~~~~~W~~~~------------~~~~~vE~tayaLlall~~~~--~~~~~~iv~wL~~qr~~ 1261 (1661)
T 2b39_A 1208 KFLNTAKEKNRWEEPN------------QKLYNVEATSYALLALLARKD--YDTTPPVVRWLNEQRYY 1261 (1661)
T ss_dssp HHHHHSBTTTBCCCSS------------CHHHHHHHHHHHHHHHHHHTC--TTTSHHHHHHHHHCCTB
T ss_pred HHHhhccCCCCCCCCC------------CCcchHHHHHHHHHHHHhcCC--hhhHHHHHHHHHhcccC
Confidence 7777655333454320 111245679999999999875 34578899999998864
No 35
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.88 E-value=5.4e-08 Score=116.43 Aligned_cols=247 Identities=14% Similarity=0.067 Sum_probs=149.8
Q ss_pred CCcchHHHHHHHHHhcCC------c-h----hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCC
Q 012325 160 SQLWDTAFAVQAIISTNL------V-E----EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPI 228 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~------~-~----~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd 228 (466)
+...=..+++..|.+.+. . + +....|+.+++=+++.|..| |||++. ....++
T Consensus 1013 s~~~P~~~~~~yL~~~~qw~~l~~~~~~~~~~~~~~i~~g~~r~l~~q~~d---------------Gsfs~w--~~~~~s 1075 (1676)
T 3cu7_A 1013 MSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNAD---------------YSYSVW--KGGSAS 1075 (1676)
T ss_dssp TTSHHHHHHHHHHHHTTCGGGCSSCHHHHHHHHHHHHHHHHHHGGGGBCTT---------------SCBCSS--SSSCCC
T ss_pred HhhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHhhccCCC---------------CCcccc--CCCCCc
Confidence 344445566666666543 1 0 12234555666666777665 676665 234568
Q ss_pred chhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHh-hccCCCceeccccccccccccccCcccccCCcc--ccCC
Q 012325 229 SDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNADGGFATYELMRSYPWLEVLNPAETFGDIV--IDYP 305 (466)
Q Consensus 229 ~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~-~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~--~d~~ 305 (466)
...||.+++.|..+.+. + .++++.+.+|++||.+ .|++||.|..-.. .+...+ -|... ...+
T Consensus 1076 ~wLTAyv~~~l~~A~~~-----~-~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~----~~~~~~-----~gg~~~~~~~~ 1140 (1676)
T 3cu7_A 1076 TWLTAFALRVLGQVNKY-----V-EQNQNSICNSLLWLVENYQLDNGSFKENSQ----YQPIKL-----QGTLPVEAREN 1140 (1676)
T ss_dssp HHHHHHHHHHHHHHHTT-----S-CCCHHHHHHHHHHHHHHSBCTTSCBCCCSS----CCCCCC-----CSCHHHHHHHH
T ss_pred EEEeHHHHHHHHHHHhc-----c-cCCHHHHHHHHHHHHHhhCCCCCcccCCcc----ccchhh-----cCCcccccccC
Confidence 89999999999887642 1 4678899999999999 9999999853110 000000 01110 0001
Q ss_pred CCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHH
Q 012325 306 CVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSI 385 (466)
Q Consensus 306 ~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i 385 (466)
.+..|+.++.+|...+... ....+...+.+|++||.++... + ...|+.+.+..||..+|.. ....
T Consensus 1141 ~~~ltAyvl~aL~~~~~~~---~~~~~~~~i~~a~~yL~~~~~~---~------~~~y~~A~lA~Al~l~g~~---~~~a 1205 (1676)
T 3cu7_A 1141 SLYLTAFTVIGIRKAFDIC---PLVKIDTALIKADNFLLENTLP---A------QSTFTLAISAYALSLGDKT---HPQF 1205 (1676)
T ss_dssp HHHHHHHHHHHHHHTGGGS---CCHHHHHHHHHHHHHHHHHHSS---C------SCHHHHHHHHHHHTTSCTT---CHHH
T ss_pred ccccHHHHHHHHHhccccc---CCcccHHHHHHHHHHHHHhhhc---c------CCHHHHHHHHHHHHhcCCc---hhhH
Confidence 2456899999998775421 0123457899999999876422 1 2367777777777777654 2225
Q ss_pred HHHHHHHHhccCCC-C-----CCCCcccccccccccC-CCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 386 RKACEFLLSKQRPS-G-----GWGESYLSCQKKVYSN-LEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 386 ~ra~~~Ll~~Q~~D-G-----gWge~~~s~~~~~y~~-~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
+++++.|.+....+ + .|.....+ ..|.. ..+...++..||||||+|+..+. .+.+.+.++||.++++.
T Consensus 1206 ~~~l~~L~~~a~~~~~~~~~~~w~~~~~~---~~~~~~~~~~~~~ve~tayaLlall~~~~--~~~~~~iv~wL~~qr~~ 1280 (1676)
T 3cu7_A 1206 RSIVSALKREALVKGNPPIYRFWKDNLQH---KDSSVPNTGTARMVETTAYALLTSLNLKD--INYVNPVIKWLSEEQRY 1280 (1676)
T ss_dssp HHHHHHHHHHCEEETTTTSEEECCSCSSC---CSSCCCSCCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhhhhhccCCccccCCCCCCCC---ccccccCCCccchHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhccCC
Confidence 66777777765522 2 45432110 00100 00111245678999999999863 55688999999998764
No 36
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.86 E-value=1.1e-08 Score=104.16 Aligned_cols=148 Identities=11% Similarity=0.013 Sum_probs=104.7
Q ss_pred CCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHH
Q 012325 159 GSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKA 238 (466)
Q Consensus 159 ~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~a 238 (466)
...++..+++++||+..|.... .+.+..|+..|..++ +. .|+| -++|.||+|++|
T Consensus 133 ~tn~Yq~sL~vLALC~~g~~v~-----~~~v~~Ll~~~~~~~----~~-------~g~~---------~sVDT~AMA~lA 187 (414)
T 2bb6_A 133 RTSYYQYSLGILALCVHQKRVH-----DSVVGKLLYAVEHKP----HL-------LQDH---------VSVDTMAMAGMA 187 (414)
T ss_dssp SSCHHHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHSSS----CS-------CCTT---------THHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCCcc-----HHHHHHHHHHhhccC----cC-------CCCc---------ccccHHHHHHHH
Confidence 4567899999999999986542 225566777665431 10 1333 279999999999
Q ss_pred hHhhhcccccccCCccchHHHHHHH----HHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHH
Q 012325 239 SLLLSKLSSAIVGEPIETKRLYDSV----NVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASI 314 (466)
Q Consensus 239 L~~~~~~~~~~~g~~~~~~~i~~av----~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl 314 (466)
|..+.+... .+-..+.|.+|+ .+|++.|++||+|+ + ++.|+.++
T Consensus 188 L~C~~~~~~----~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG---------------------N-------~~ST~lA~ 235 (414)
T 2bb6_A 188 FSCLELSNL----NPKQRNRINLALKRVQEKILKAQTPEGYFG---------------------N-------VYSTPLAL 235 (414)
T ss_dssp HHHHHHHTS----CGGGHHHHHHHHHHHHHHHHHTBCTTSCBS---------------------S-------TTTHHHHH
T ss_pred HHHHhhcCC----CcchHHHHHHHHHHHHHHHHHhhcCCCCcc---------------------c-------hhhHHHHH
Confidence 998865321 112356677777 88888899999984 1 56799999
Q ss_pred HHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHc
Q 012325 315 QALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAA 375 (466)
Q Consensus 315 ~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~ 375 (466)
+||...+.. +. +-.-.+.+++++|++ |.+||+|.. .-.|+.+|.||.-.
T Consensus 236 QAL~~~~~~-~~----~~~w~~~~a~~~Ll~-q~~dG~F~n------p~ataQ~lpaL~gk 284 (414)
T 2bb6_A 236 QLLMGSLRP-SV----ELGTACLKAKAALQA-SLQHKTFQN------PLMISQLLPVLNQK 284 (414)
T ss_dssp HHHTTCSSC-CH----HHHHHHHHHHHHHHH-HHTTTCCCS------HHHHHHHHHHTTTC
T ss_pred HHHHhcCCC-cc----cccchHHHHHHHHHH-hccCCCCCC------hHHHHHHHHHhcCC
Confidence 999998652 11 101267899999998 999999962 23788888887744
No 37
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.81 E-value=3.5e-07 Score=101.44 Aligned_cols=233 Identities=16% Similarity=0.117 Sum_probs=136.1
Q ss_pred HHHHHHhhhcceeeeCCCce-eecCCCCCcchHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHhccccCCCCCCcccccCC
Q 012325 134 FKLHIPRINDYLWIAEDGMK-VQGYNGSQLWDTAFAVQAIISTNLV-EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRH 211 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~~G~~-~q~~~~s~vwDTa~a~~AL~~ag~~-~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~ 211 (466)
++++++++..| ...||.+ .-+...+..|-||+++..|.++..- ......+.++++||+.+|..+ |.|....+-
T Consensus 370 l~~gyqrll~~--q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~---G~f~e~g~~ 444 (767)
T 4fxk_B 370 IQKGYMRIQQF--RKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQAD---GSFQDPCPV 444 (767)
T ss_dssp HHHHHHHHTTT--BCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTT---SCBCCSSCS
T ss_pred HHHHHHHHHHh--hcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhc---ccchhcchh
Confidence 66788888887 5677732 1122257899999999999987421 111467999999999999876 565432211
Q ss_pred ---CCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCcc---chHHHHHHHHHHHhhccCCCceecccccccc
Q 012325 212 ---ISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPI---ETKRLYDSVNVIFSLQNADGGFATYELMRSY 285 (466)
Q Consensus 212 ---~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~---~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~ 285 (466)
...||-.... .++..||.++.||+.............. ....+.+|++||....+. ++.
T Consensus 445 ~~~~~~gg~~~~~-----~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~--~~~-------- 509 (767)
T 4fxk_B 445 LDRSMQGGLVGND-----ETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASA--GLL-------- 509 (767)
T ss_dssp CCCCCCSSTTTHH-----HHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTS--CCC--------
T ss_pred cchhhcCCcCCCc-----cchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhc--ccC--------
Confidence 1123221110 2355799999999765432211111111 135688999999764322 221
Q ss_pred ccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhccc--CC-CccccCCC---
Q 012325 286 PWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL--DG-SWYGSWGV--- 359 (466)
Q Consensus 286 ~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~--DG-~W~g~wg~--- 359 (466)
.++..|.+..||+..+. + ......+.+-|.+.-.. ++ .|...-+.
T Consensus 510 --------------------~~y~~Al~ayaL~l~~~--~-------~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~ 560 (767)
T 4fxk_B 510 --------------------GAHAAAITAYALSLTKA--P-------VDLLGVAHNNLMAMAQETGDNLYWGSVTGSQSN 560 (767)
T ss_dssp --------------------CHHHHHHHHHHHHHHTC--T-------THHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGG
T ss_pred --------------------CHHHHHHHHHHHHHcCC--c-------HHHHHHHHHHHHhhcEEcCCeeEEeccCCCccc
Confidence 02233444445555543 1 12333444445443222 22 22110000
Q ss_pred --------------------cccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCC
Q 012325 360 --------------------CFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEG 419 (466)
Q Consensus 360 --------------------~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~ 419 (466)
..+-.|++||.++..... ..+.+.+.++||.+.|+..|||+.+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~s~~VEttayaLla~l~~~~---~~~~a~~iv~WL~~Qr~~~Ggf~ST-------------- 623 (767)
T 4fxk_B 561 AVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG---KAEMADQASAWLTRQGSFQGGFRST-------------- 623 (767)
T ss_dssp GGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHTCCTTSSCSSH--------------
T ss_pred ccccccccccccccccccchHHHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHhhcCCCCCcCH--------------
Confidence 012348899998877643 3467889999999999999999642
Q ss_pred CCCchhHHHHHHHHHHHc
Q 012325 420 DRSHVVNTAWAMLALIDA 437 (466)
Q Consensus 420 ~~s~~~~TA~ALlaL~~a 437 (466)
-.|++||.||...
T Consensus 624 -----QdTv~AL~ALa~y 636 (767)
T 4fxk_B 624 -----QDTVIALDALSAY 636 (767)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 3599999999764
No 38
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.79 E-value=6e-10 Score=131.74 Aligned_cols=207 Identities=17% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHH
Q 012325 184 TLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSV 263 (466)
Q Consensus 184 ~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av 263 (466)
.|+++++-+++.|..| |||++... ..++...||.|++.|..+.+. +..+++..+.+++
T Consensus 1031 ~i~~Gyqr~l~yq~~D---------------Gsfs~w~~--~~~stWLTAyV~k~f~~A~~~-----i~~Vd~~~l~~~~ 1088 (1642)
T 3prx_B 1031 QIVTGYAQQMVYKKAD---------------HSYAAFTN--RASSSWLTAYVVKVFAMAAKM-----VAGISHEIICGGV 1088 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCC---------------CCeecCCC--CCCccccHHHHHHHHHHHHhh-----ccCCCHHHHHHHH
Confidence 3555666666666654 55554432 336788999999999876541 2236788999999
Q ss_pred HHHHh-hccCCCceeccccccccccccccCcccccCCcccc-----CCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHH
Q 012325 264 NVIFS-LQNADGGFATYELMRSYPWLEVLNPAETFGDIVID-----YPCVECTSASIQALTSFKKLYPGHWQEDVDHCIK 337 (466)
Q Consensus 264 ~~Ll~-~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d-----~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ 337 (466)
+||++ .|++||+|..-. .+|.+.|.. -..+..||.|+.||...+...+.. ...+..+|+
T Consensus 1089 ~wL~~~~Q~~dG~F~e~~--------------~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~-~~~~~~~i~ 1153 (1642)
T 3prx_B 1089 RWLILNRQQPDGAFKENA--------------PVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDY-VNSLDSSIK 1153 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhccCCCCcccccc--------------cccchhccCCccCCCCcccchHHHHHHHHhcccccccc-cccchHHHH
Confidence 99998 899999995321 112221111 124778999999999876431111 123356899
Q ss_pred HHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCC
Q 012325 338 RAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNL 417 (466)
Q Consensus 338 ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~ 417 (466)
||+.||.++-.. ....|..|.+..||..+|.. .. ..+.-|.+. ..--|....
T Consensus 1154 ~a~~~L~~~~~~---------~~~~Y~~Ai~aYAl~l~~~~--~~----~~l~~l~~~--~~~~W~~~~----------- 1205 (1642)
T 3prx_B 1154 KATNYLLKKYEK---------LQRPYTTALTAYALAAADQL--ND----DRVLMAAST--GRDHWEEYN----------- 1205 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhc---------CCCHHHHHHHHHHHHhcCCc--hH----HHHHHHHhc--CCCCCCCCC-----------
Confidence 999999875311 13468887777888887754 12 222223222 111243210
Q ss_pred CCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCC
Q 012325 418 EGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLERE 458 (466)
Q Consensus 418 ~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~ 458 (466)
+...++..||||||+|+..+. .+...+.++||.++|+.
T Consensus 1206 -~~~~~VE~TaYaLLa~l~~~~--~~~a~~iv~WL~~qr~~ 1243 (1642)
T 3prx_B 1206 -AHTHNIEGTSYALLALLKMKK--FDQTGPIVRWLTDQNFY 1243 (1642)
T ss_dssp -----------------------------------------
T ss_pred -CchHHHHHHHHHHHHHhccCc--hhhHHHHHHHHHHhccC
Confidence 112357789999999999764 45688999999998864
No 39
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.72 E-value=2e-07 Score=111.35 Aligned_cols=225 Identities=12% Similarity=0.054 Sum_probs=136.1
Q ss_pred HHHHHHhhhcceeeeCCCce-eecCCCCCcchHHHHHHHHHhcCCc--hhhHHHHHHHHHHHHh-ccccCCCCCCccccc
Q 012325 134 FKLHIPRINDYLWIAEDGMK-VQGYNGSQLWDTAFAVQAIISTNLV--EEYGATLKKAHKYIKD-SQVLEDCPGNLDFWY 209 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~~G~~-~q~~~~s~vwDTa~a~~AL~~ag~~--~~~~~~l~~a~~wL~~-~Q~~~~~~Gdw~~~~ 209 (466)
++.+++++..| +..||.+ .-+...+..|-||+++..|.++..- -+ ...+.+|++||.+ .|..+ |.|....
T Consensus 1048 i~~g~~r~l~~--q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~-~~~l~~a~~~L~~~~q~~~---g~f~~~~ 1121 (1661)
T 2b39_A 1048 IRKGYTQQLAF--RQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAID-SKDLCETVKWLILEKQKPD---GIFQEDG 1121 (1661)
T ss_dssp HHHHHHHHHTT--BCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCC-HHHHHHHHHHHHHHTBCTT---SCBCCCS
T ss_pred HHHHHHHHHHh--hcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCC-HHHHHHHHHHhhHhhCCCC---Ccccccc
Confidence 55667777777 4667632 1122257899999999999987421 12 5789999999995 88765 6664321
Q ss_pred C---CCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccc
Q 012325 210 R---HISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYP 286 (466)
Q Consensus 210 ~---~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~ 286 (466)
+ ....||..- ...+++..||.++.||...+.... .+.+.....+.+|++||.+.... +.
T Consensus 1122 ~~~~~~~~gg~~~----~~~~~~~ltAyvl~aL~~~~~~~~--~~~~~~~~~i~~a~~yL~~~~~~---~~--------- 1183 (1661)
T 2b39_A 1122 PVIHQEMIGGFRD----TREKDVSLTAFVLIALHEAKDICE--AQVNSLGRSIAKAGDFLENHYRE---LR--------- 1183 (1661)
T ss_dssp CCCCTTSCCCTTC----CTTSSHHHHHHHHHHHHHTTTTTT--TTCSSHHHHHHHHHHHHHHHTTT---CC---------
T ss_pred ceechhhcCCccc----cccCccccHHHHHHHHHhcccccc--ccCcchhHHHHHHHHHHHHhhhc---cC---------
Confidence 1 112344321 011245679999999976543210 01122457899999999764221 10
Q ss_pred cccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccCCCc--ccch
Q 012325 287 WLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC--FTYG 364 (466)
Q Consensus 287 ~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg~~--~~Y~ 364 (466)
+++..|.+..||+..+.. .++.++.|.+.......|... +.. .+-.
T Consensus 1184 -------------------~~y~~A~layAL~l~g~~------------a~~~l~~L~~~~~~~~~W~~~-~~~~~~vE~ 1231 (1661)
T 2b39_A 1184 -------------------RPYTVAIAAYALALLGKL------------EGDRLTKFLNTAKEKNRWEEP-NQKLYNVEA 1231 (1661)
T ss_dssp -------------------SHHHHHHHHHHHHHTTCC------------CHHHHHHHHHHSBTTTBCCCS-SCHHHHHHH
T ss_pred -------------------CHHHHHHHHHHHHHcCCc------------HHHHHHHHHhhccCCCCCCCC-CCCcchHHH
Confidence 122334444455555431 123355566555433344321 111 2345
Q ss_pred HHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHc
Q 012325 365 TWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDA 437 (466)
Q Consensus 365 T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~a 437 (466)
|++||.+|...+.. ..+.+.++||.+.|+.+|||..+ -.|+.||.||...
T Consensus 1232 tayaLlall~~~~~----~~~~~iv~wL~~qr~~~gg~~ST-------------------qdT~~Al~AL~~y 1281 (1661)
T 2b39_A 1232 TSYALLALLARKDY----DTTPPVVRWLNEQRYYGGGYGST-------------------QATFMVFQALAQY 1281 (1661)
T ss_dssp HHHHHHHHHHHTCT----TTSHHHHHHHHHCCTBTTBBCSH-------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCh----hhHHHHHHHHHhcccCCCCcccc-------------------hHHHHHHHHHHHH
Confidence 88999999987653 34677889999999999999642 3689999999864
No 40
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.67 E-value=8.2e-08 Score=97.09 Aligned_cols=146 Identities=14% Similarity=0.051 Sum_probs=104.3
Q ss_pred CCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHh
Q 012325 160 SQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKAS 239 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL 239 (466)
...+.-+++++||+..|... -.+.+.-|+..|..+ |+| -++|.+|++++||
T Consensus 112 t~~Yq~sL~vLALC~~~~~v-----~~~~v~kLl~~~~~~---------------g~~---------~sVDT~AMa~LAL 162 (399)
T 2pmv_A 112 SAFYGPSLAILALCQKNSEA-----TLPIAVRFAKTLLAN---------------SSP---------FNVDTGAMATLAL 162 (399)
T ss_dssp GGGHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHHHHC---------------CSC---------CCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHcc---------------CCc---------ccchHHHHHHHHH
Confidence 35689999999999988532 334455566666653 221 1799999999999
Q ss_pred Hhhhc---ccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHH
Q 012325 240 LLLSK---LSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQA 316 (466)
Q Consensus 240 ~~~~~---~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~a 316 (466)
..+.+ ...+......-...+++.+.+|++.|++||+|+ + ++.|+.+++|
T Consensus 163 ~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG---------------------n-------~yST~LA~QA 214 (399)
T 2pmv_A 163 TCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG---------------------D-------IYSTGLAMQA 214 (399)
T ss_dssp HHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS---------------------S-------HHHHHHHHHH
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc---------------------c-------cccHHHHHHH
Confidence 88765 110000000115678888899999999999985 1 5689999999
Q ss_pred HHhhhhhCCCCchhhhHH-HHHHHHHHHHHhcccCCCccccCCCcccchHHHHHHHHHHcc
Q 012325 317 LTSFKKLYPGHWQEDVDH-CIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAG 376 (466)
Q Consensus 317 L~~~~~~~~~~~~~~i~~-~i~ra~~~L~~~Q~~DG~W~g~wg~~~~Y~T~~al~aL~~~g 376 (466)
|...+.. +. .+ .+.++++||++ |.+||+|. ....|+.+|.||...+
T Consensus 215 L~~~~~~-~~------~~W~c~~al~~l~~-q~~~G~F~------np~~taQilPaL~~kt 261 (399)
T 2pmv_A 215 LSVTPEP-SK------KEWNCKKTTDMILN-EIKQGKFH------NPMSIAQILPSLKGKT 261 (399)
T ss_dssp HHHCSSC-CS------SCCCHHHHHHHHHH-HHTTTTTC------SHHHHHHHHHHHTTCC
T ss_pred HHhcCCC-cc------ccccHHHHHHHHHH-HhhCCCcC------CHHHHHHHHHHhcCCC
Confidence 9998753 21 13 58899999998 89999995 2457888888887654
No 41
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.61 E-value=4.5e-07 Score=108.55 Aligned_cols=228 Identities=15% Similarity=0.078 Sum_probs=133.3
Q ss_pred HHHHHHhhhcceeeeCCCce-eecCCCCCcchHHHHHHHHHhcCC--chhhHHHHHHHHHHHHh-ccccCCCCCCccccc
Q 012325 134 FKLHIPRINDYLWIAEDGMK-VQGYNGSQLWDTAFAVQAIISTNL--VEEYGATLKKAHKYIKD-SQVLEDCPGNLDFWY 209 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~~G~~-~q~~~~s~vwDTa~a~~AL~~ag~--~~~~~~~l~~a~~wL~~-~Q~~~~~~Gdw~~~~ 209 (466)
++.+++++..| +..||.+ .-+...++.|-||+++..|.++.. .-+ ...+.+|++||.+ +|..+ |.|....
T Consensus 1049 i~~g~~r~l~~--q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~-~~~l~~a~~~L~~~~q~~~---g~f~~~~ 1122 (1676)
T 3cu7_A 1049 LKEGMLSIMSY--RNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQN-QNSICNSLLWLVENYQLDN---GSFKENS 1122 (1676)
T ss_dssp HHHHHHHGGGG--BCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHSBCTT---SCBCCCS
T ss_pred HHHHHHHHhhc--cCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHhhCCCC---CcccCCc
Confidence 45566677666 5667631 113335789999999999988631 112 5789999999999 88765 6654311
Q ss_pred CC---CCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccc
Q 012325 210 RH---ISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYP 286 (466)
Q Consensus 210 ~~---~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~ 286 (466)
+. ...||..-. ...+++..||.++.||...+... +.+.....+.+|++||.+.... +.
T Consensus 1123 ~~~~~~~~gg~~~~---~~~~~~~ltAyvl~aL~~~~~~~----~~~~~~~~i~~a~~yL~~~~~~---~~--------- 1183 (1676)
T 3cu7_A 1123 QYQPIKLQGTLPVE---ARENSLYLTAFTVIGIRKAFDIC----PLVKIDTALIKADNFLLENTLP---AQ--------- 1183 (1676)
T ss_dssp SCCCCCCCSCHHHH---HHHHHHHHHHHHHHHHHHTGGGS----CCHHHHHHHHHHHHHHHHHHSS---CS---------
T ss_pred cccchhhcCCcccc---cccCccccHHHHHHHHHhccccc----CCcccHHHHHHHHHHHHHhhhc---cC---------
Confidence 10 011221100 00013457899999987653310 1112356889999999764221 10
Q ss_pred cccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcc-cCC-----Ccccc----
Q 012325 287 WLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQE-LDG-----SWYGS---- 356 (466)
Q Consensus 287 ~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~-~DG-----~W~g~---- 356 (466)
+++..|.+-.||+..+.. +...+++++.|.+... .++ .|...
T Consensus 1184 -------------------~~y~~A~lA~Al~l~g~~---------~~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~ 1235 (1676)
T 3cu7_A 1184 -------------------STFTLAISAYALSLGDKT---------HPQFRSIVSALKREALVKGNPPIYRFWKDNLQHK 1235 (1676)
T ss_dssp -------------------CHHHHHHHHHHHTTSCTT---------CHHHHHHHHHHHHHCEEETTTTSEEECCSCSSCC
T ss_pred -------------------CHHHHHHHHHHHHhcCCc---------hhhHHHHHHHHHhhhhhccCCccccCCCCCCCCc
Confidence 012233333344444421 1124556666766554 333 34221
Q ss_pred -C-----CC-cccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHH
Q 012325 357 -W-----GV-CFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAW 429 (466)
Q Consensus 357 -w-----g~-~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ 429 (466)
| +. ..+-.|++||.+|...+. ...+.+.++||.+.|+.+|||..+ -.|++
T Consensus 1236 ~~~~~~~~~~~~ve~tayaLlall~~~~----~~~~~~iv~wL~~qr~~~Gg~~ST-------------------QdT~~ 1292 (1676)
T 3cu7_A 1236 DSSVPNTGTARMVETTAYALLTSLNLKD----INYVNPVIKWLSEEQRYGGGFYST-------------------QDTIN 1292 (1676)
T ss_dssp SSCCCSCCCHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHSCSSSCCSTT-------------------TTHHH
T ss_pred cccccCCCccchHHHHHHHHHHHHhcCC----hhHHHHHHHHHHhccCCCCCcccc-------------------HHHHH
Confidence 1 10 012347899999998752 356778899999999999999752 25889
Q ss_pred HHHHHHHc
Q 012325 430 AMLALIDA 437 (466)
Q Consensus 430 ALlaL~~a 437 (466)
||.||...
T Consensus 1293 Al~AL~~y 1300 (1676)
T 3cu7_A 1293 AIEGLTEY 1300 (1676)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 42
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=97.78 E-value=0.00012 Score=79.70 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcccC-CCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCC-CCCCcccccccccc
Q 012325 337 KRAVKFIEKIQELD-GSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG-GWGESYLSCQKKVY 414 (466)
Q Consensus 337 ~ra~~~L~~~Q~~D-G~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG-gWge~~~s~~~~~y 414 (466)
.++++||.+..+.- |+-+..+.+ ..+...+.+-.|...|..+.-.+.|+.+++.+.+....+| +|+..
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~-d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~--------- 289 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPV-DLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARC--------- 289 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCC-HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSS---------
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCC-cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccC---------
Confidence 47789998876653 333332222 2356778899999999987678899999999877544443 23311
Q ss_pred cCCCCCCCchhHHHHHHHHHHHcCCCC
Q 012325 415 SNLEGDRSHVVNTAWAMLALIDAGQVR 441 (466)
Q Consensus 415 ~~~~~~~s~~~~TA~ALlaL~~ag~~~ 441 (466)
....+...||.+.-.|-.-|+.-
T Consensus 290 ----~~~~DL~~tAL~FRLLRqhGy~V 312 (727)
T 3pya_A 290 ----SHVQDIDDTAMAFRLLRQHGYQV 312 (727)
T ss_dssp ----CSCCCHHHHHHHHHHHHHTTCCC
T ss_pred ----CCCCCHHHHHHHHHHHHhCCCCC
Confidence 11235677888888888877653
No 43
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.74 E-value=3.9e-06 Score=99.47 Aligned_cols=119 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcccCCCccccCCC--cccchHHHHHHHHHHccCC-C-CCcHHHHHHHHHHHh-ccCCCCCCCCccc
Q 012325 333 DHCIKRAVKFIEKIQELDGSWYGSWGV--CFTYGTWFGVKGLVAAGMN-Y-SNSSSIRKACEFLLS-KQRPSGGWGESYL 407 (466)
Q Consensus 333 ~~~i~ra~~~L~~~Q~~DG~W~g~wg~--~~~Y~T~~al~aL~~~g~~-~-~~~~~i~ra~~~Ll~-~Q~~DGgWge~~~ 407 (466)
...|+.|+.=+++.|++||||. -||. ..++.|++|+..|..+..- + .+...+.++++||.+ +|++||.|.|...
T Consensus 1029 ~~~i~~Gyqr~l~yq~~DGsfs-~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~ 1107 (1642)
T 3prx_B 1029 VNQIVTGYAQQMVYKKADHSYA-AFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAP 1107 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCCCee-cCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCccccccc
Confidence 3456677777788899999984 4543 3567899999999887542 2 466789999999998 8999999988643
Q ss_pred ccccccccCCCCC----CCchhHHHHHHHHHHHcCCC-------CchhHHHHHHHHHhcc
Q 012325 408 SCQKKVYSNLEGD----RSHVVNTAWAMLALIDAGQV-------RINCCCSTLKVTLSLE 456 (466)
Q Consensus 408 s~~~~~y~~~~~~----~s~~~~TA~ALlaL~~ag~~-------~~~~i~rgv~~L~~~q 456 (466)
-.. .. +.|+ .+.++-|||.|+||++++.. ....+.+|+.||.+..
T Consensus 1108 v~~-~~---m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~ 1163 (1642)
T 3prx_B 1108 VLS-GT---MQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKY 1163 (1642)
T ss_dssp ------------------------------------------------------------
T ss_pred ccc-hh---ccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhh
Confidence 211 11 1232 34678899999999998753 1346899999997653
No 44
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=97.56 E-value=0.0025 Score=70.23 Aligned_cols=261 Identities=15% Similarity=0.176 Sum_probs=141.4
Q ss_pred ccccchhhHHHhhhhccccCCCcHHHHHHHHhhhcceeeeCCCceeecCCCCCcch----HHHHHHHHHhcCCchhhHHH
Q 012325 109 YLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWD----TAFAVQAIISTNLVEEYGAT 184 (466)
Q Consensus 109 ~~~~~pv~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~G~~~q~~~~s~vwD----Ta~a~~AL~~ag~~~~~~~~ 184 (466)
.+++++-.||..++.-...++..|.|..++++|.+- +.+||.|-.+. ..+..| |..++.||..-+..+ +.
T Consensus 51 ~~S~S~YDTAWVamvp~~~~~~~p~Fp~~~~wil~n--Q~~DGsWg~~~-~~~~~d~l~~TlAcvlAL~~w~~~~---~~ 124 (785)
T 3s9v_A 51 ETNPSAYDTAWVARIPAVDGSDNPHFPETVEWILQN--QLKDGSWGEGF-YFLAYDRILATLACIITLTLWRTGE---TQ 124 (785)
T ss_dssp CCCCCHHHHHHHTTSBCTTSCSSBSSHHHHHHHHHC--CCTTSCCSCSS-SCCHHHHHHHHHHHHHHHHHTTCCH---HH
T ss_pred cccCcHHHhhHHhccccCCCCCCCCchHHHHHHHHc--cCCCCCCCCCC-CCchHHHHHHHHHHHHHHHHcccCH---HH
Confidence 345665668875444444456678899999999776 56889885433 222334 888999999987654 57
Q ss_pred HHHHHHHHHhcccc-CCCCCCcccccCCCCCCCCCCc---------cCCCCCCCchhhHH-HHHHhHh--hhccccc-cc
Q 012325 185 LKKAHKYIKDSQVL-EDCPGNLDFWYRHISKGAWPFS---------TADHGWPISDCTSE-GLKASLL--LSKLSSA-IV 250 (466)
Q Consensus 185 l~~a~~wL~~~Q~~-~~~~Gdw~~~~~~~~~GGW~f~---------~~~~~~pd~D~Ta~-al~aL~~--~~~~~~~-~~ 250 (466)
++||+.||.+.=.. ++.. .+.+.-|+-.- ..+-..| .|-+.. .+..+.. +.+.+.+ ..
T Consensus 125 i~~Gl~fl~~nl~~~~~~~-------~~~~i~gfeiifP~ll~~a~~~gl~~~-~~~~~~~~l~~~r~~kL~~~~~~~~~ 196 (785)
T 3s9v_A 125 VQKGIEFFRTQAGKMEDEA-------DSHRPSGFEIVFPAMLKEAKILGLDLP-YDLPFLKQIIEKREAKLKRIPTDVLY 196 (785)
T ss_dssp HHHHHHHHHHHHTTGGGST-------TSCCCTTHHHHHHHHHHHHHHTTCCCC-TTSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHhhccC-------cCCCccceeeeHHHHHHHHHHcCCCCC-CCchhhHHHHHHHHHHHhCCChhhcc
Confidence 99999999876221 1000 00000011000 0000001 011110 1111111 0111000 00
Q ss_pred CCc----cchHHHHHHHHH--HHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhC
Q 012325 251 GEP----IETKRLYDSVNV--IFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLY 324 (466)
Q Consensus 251 g~~----~~~~~i~~av~~--Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~ 324 (466)
+.+ -.-|.+...++| ++..|..||++. .++..||+++.. .+
T Consensus 197 ~~p~~llhslE~l~~~~d~~~v~~~q~~~GS~~---------------------------~SPsaTAa~l~~---~~--- 243 (785)
T 3s9v_A 197 ALPTTLLYSLEGLQEIVDWQKIMKLQSKDGSFL---------------------------SSPASTAAVFMR---TG--- 243 (785)
T ss_dssp HSCCGGGGGGGGCTTTCCHHHHHTTCCTTSCBT---------------------------TBHHHHHHHHHH---HC---
T ss_pred CCcchHHHHHHhccccccHHHHHhccCCCCCcc---------------------------cCHHHHHHHHHh---CC---
Confidence 000 011223333333 346676777762 124567777542 11
Q ss_pred CCCchhhhHHHHHHHHHHHHHhccc-CCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCC-CC
Q 012325 325 PGHWQEDVDHCIKRAVKFIEKIQEL-DGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG-GW 402 (466)
Q Consensus 325 ~~~~~~~i~~~i~ra~~~L~~~Q~~-DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG-gW 402 (466)
=.++++||.+.++. +|+-+..|.. ..+...+.+..|...|..+.-.+.|+.+++.+.+.-..+| ||
T Consensus 244 -----------d~~~~~YL~~~~~~~~g~VP~~yP~-d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~ 311 (785)
T 3s9v_A 244 -----------NKKCLDFLNFVLKKFGNHVPCHYPL-DLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGW 311 (785)
T ss_dssp -----------CHHHHHHHHHHHHHHSSCCCSSCCC-HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCS
T ss_pred -----------ChhHHHHHHHHHHhcCCCCCCcCCC-cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccc
Confidence 13678899887665 4544433332 2345678899999999987677899999999876544433 34
Q ss_pred CCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCC
Q 012325 403 GESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVR 441 (466)
Q Consensus 403 ge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~ 441 (466)
+.. +...+...||.+...|-.-|+.-
T Consensus 312 ~~~-------------~~~~Dl~~tAl~FRlLR~~Gy~V 337 (785)
T 3s9v_A 312 ARE-------------NPVPDIDDTAMGLRILRLHGYNV 337 (785)
T ss_dssp STT-------------CSSCCHHHHHHHHHHHHHTTCCC
T ss_pred ccc-------------CCCCCHHHHHHHHHHHHhcCCCC
Confidence 311 11245778899988888888753
No 45
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.54 E-value=0.00066 Score=70.08 Aligned_cols=248 Identities=13% Similarity=0.167 Sum_probs=141.5
Q ss_pred chHHHHHHHHHhcCC---chhhHHHHHHHHHHHHhc------cccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhH
Q 012325 163 WDTAFAVQAIISTNL---VEEYGATLKKAHKYIKDS------QVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTS 233 (466)
Q Consensus 163 wDTa~a~~AL~~ag~---~~~~~~~l~~a~~wL~~~------Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta 233 (466)
|+-++.+.+|.++.. .+++.+.+++.++||.+. +...+ |.....+++ + + .+ + ..|+.+
T Consensus 82 y~~Gv~l~gl~~ay~~Tgd~kY~~ya~~~~dfi~~~~p~~~~~~~~~--G~l~~~~r~----~--~--~~-~--~LDD~g 148 (445)
T 3k11_A 82 YEWGVTYSALIAAAETTGDKRYTDYVQNRFRFLAEVAPHFKRVYEEK--GKTDSQLLQ----I--L--TP-H--ALDDAG 148 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHH----H--H--SC-C--SGGGTH
T ss_pred cCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccchhhhhhhcc--CCeeccccc----c--c--CC-C--cchhHH
Confidence 888999999988643 235677888889888752 22221 222211221 1 1 11 1 367888
Q ss_pred HHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhc--cCCCceeccccccccccccccCcccccCCccccCCCCCcHH
Q 012325 234 EGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQ--NADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTS 311 (466)
Q Consensus 234 ~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Q--n~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta 311 (466)
..+.+|+.+.+. .+.+...+.+.+..+||+..| .++|||--... +.+.+. +|+-.
T Consensus 149 ~~~~~Li~lY~~----T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~~~---------------~~~q~W----iD~ly 205 (445)
T 3k11_A 149 AVCTAMIKLRLK----DESLPVDGLIQNYFDFIINKEYRLADGTFARNRP---------------QRNTLW----LDDMF 205 (445)
T ss_dssp HHHHHHHHHHHH----CTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBCSS---------------STTEEE----THHHH
T ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHcCCCCCCCceeecCC---------------CCCceE----ecchh
Confidence 777777765432 233445788899999999988 56899852111 111111 34444
Q ss_pred HHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcc-cCCCccccC--------CCcccchHHHHHHHHHHccC--C--
Q 012325 312 ASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQE-LDGSWYGSW--------GVCFTYGTWFGVKGLVAAGM--N-- 378 (466)
Q Consensus 312 ~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~-~DG~W~g~w--------g~~~~Y~T~~al~aL~~~g~--~-- 378 (466)
.++..|+.++....+.+..-++.+++....+....+. ++|-|+-.| +.+..-|-+|++.||..+-. +
T Consensus 206 M~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~ 285 (445)
T 3k11_A 206 MGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCWARANGWALLTACELLDVLPED 285 (445)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcceecccchHHHHHHHHHHHhcccc
Confidence 6677777776543211000233444444444444453 457775433 12455678899999876522 1
Q ss_pred CCC----cHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHH---HHHHHHHHHcCCCCc----hhHHH
Q 012325 379 YSN----SSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNT---AWAMLALIDAGQVRI----NCCCS 447 (466)
Q Consensus 379 ~~~----~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~T---A~ALlaL~~ag~~~~----~~i~r 447 (466)
+.. -...++.++.|++.|.+||-|..... . ...| -..|.| |++|+-.+..|..+. +.++|
T Consensus 286 ~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld-~-~~~y-------~EsSaTAmfaygllkgvr~G~Ld~~~Y~~~A~k 356 (445)
T 3k11_A 286 YPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLD-C-NDSY-------LETSATAIYVYCLAHAINKGWIDAIAYGPVAQL 356 (445)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTT-C-TTSC-------EEHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCchhhccC-C-CCCC-------CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 111 15677889999999999999975321 1 1122 123444 555555566666543 35778
Q ss_pred HHHHHHhc
Q 012325 448 TLKVTLSL 455 (466)
Q Consensus 448 gv~~L~~~ 455 (466)
+++-|.+.
T Consensus 357 a~~~L~~~ 364 (445)
T 3k11_A 357 GWHAVAGK 364 (445)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88888764
No 46
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.54 E-value=0.0035 Score=69.38 Aligned_cols=262 Identities=17% Similarity=0.165 Sum_probs=142.0
Q ss_pred ccccchhhHHHhhhhccccCCCcHHHHHHHHhhhcceeeeCCCceeecCCCCC----cchHHHHHHHHHhcCCchhhHHH
Q 012325 109 YLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQ----LWDTAFAVQAIISTNLVEEYGAT 184 (466)
Q Consensus 109 ~~~~~pv~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~G~~~q~~~~s~----vwDTa~a~~AL~~ag~~~~~~~~ 184 (466)
.+++++-.||..++.-...++..|.|..++++|.+- +.+||.|-.+. +.. +=.|..+++||..-+..+ +.
T Consensus 78 ~~S~S~YDTAWVAmvp~~~~~~~p~Fp~~~~wil~n--Q~~DGsWg~~~-~~~~~d~ll~TlAcvlAL~~w~~~~---~~ 151 (817)
T 3sdr_A 78 MITPSAYDTAWVARVPAIDGSARPQFPQTVDWILKN--QLKDGSWGIQS-HFLLSDRLLATLSCVLVLLKWNVGD---LQ 151 (817)
T ss_dssp CCCCCHHHHHHHHTCBCTTSCSSBSSHHHHHHHHHC--CCTTSCCSCTT-CCCHHHHHHHHHHHHHHHHHTTCCH---HH
T ss_pred ccccCHHHhhHHheeecCCCCCCCCchHHHHHHHHc--cCCCCCCCCCC-CcchHHHHHHHHHHHHHHHHccCCH---HH
Confidence 345555668875544444456778899999999776 56888875332 222 334888999999987654 58
Q ss_pred HHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCc---------cCCCCCCCchhhH-HHHHHhHh--hhccccc-ccC
Q 012325 185 LKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFS---------TADHGWPISDCTS-EGLKASLL--LSKLSSA-IVG 251 (466)
Q Consensus 185 l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~---------~~~~~~pd~D~Ta-~al~aL~~--~~~~~~~-~~g 251 (466)
++||+.||.+.=..- ..++. ....+=|+-.- ..+-..| .|.+. ..+.++.. +.+.+.+ ..+
T Consensus 152 i~~Gl~fl~~nl~~~--~~~~~---~~~~~vgfeiifP~ll~~a~~~gl~~p-~~~~~~~~l~~~r~~kL~~~~~~~~~~ 225 (817)
T 3sdr_A 152 VEQGIEFIKSNLELV--KDETD---QDSLVTDFEIIFPSLLREAQSLRLGLP-YDLPYIHLLQTKRQERLAKLSREEIYA 225 (817)
T ss_dssp HHHHHHHHHHHHTTC--CSGGG---SCSCCTTHHHHHHHHHHHHHHTTCSCC-TTCHHHHHHHHHHHHHHHTCCSGGGGT
T ss_pred HHHHHHHHHHHHHHh--hcccc---cCCCCcceeeeHHHHHHHHHHcCCCCC-CCchHHHHHHHHHHHHHhCCChhhccC
Confidence 999999998763221 00000 00000111000 0000001 01111 01111111 1111100 001
Q ss_pred Cc----cchHHHHHHHHH--HHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCC
Q 012325 252 EP----IETKRLYDSVNV--IFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYP 325 (466)
Q Consensus 252 ~~----~~~~~i~~av~~--Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~ 325 (466)
.+ -.-|.+...++| +...|..||++. .++..||+++.. .+
T Consensus 226 ~p~~llhslE~l~~~~d~~~~~~~q~~~GS~~---------------------------~SPsaTAa~l~~---~~---- 271 (817)
T 3sdr_A 226 VPSPLLYSLEGIQDIVEWERIMEVQSQDGSFL---------------------------SSPASTACVFMH---TG---- 271 (817)
T ss_dssp SCCGGGGGGGGCTTTCCTTTGGGGCCTTSCBT---------------------------TBHHHHHHHHHH---HC----
T ss_pred CCchHHHHHHhccccccHHHHHhccCCCCCcc---------------------------cCHHHHHHHHHh---CC----
Confidence 11 012333334555 555666666652 124567776532 21
Q ss_pred CCchhhhHHHHHHHHHHHHHhccc-CCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCC-CCC
Q 012325 326 GHWQEDVDHCIKRAVKFIEKIQEL-DGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG-GWG 403 (466)
Q Consensus 326 ~~~~~~i~~~i~ra~~~L~~~Q~~-DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG-gWg 403 (466)
=.++.+||.+..+. +|+-+..|.. ..+...+.+..|...|..+.-.+.|+.+++.+.+.-.+.| ||+
T Consensus 272 ----------d~~~~~YL~~~~~~~~g~VP~~yP~-d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~ 340 (817)
T 3sdr_A 272 ----------DAKCLEFLNSVMIKFGNFVPCLYPV-DLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWG 340 (817)
T ss_dssp ----------CHHHHHHHHHHHHHHSSCCCSSSCC-HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSS
T ss_pred ----------ChhHHHHHHHHHHhcCCCCCccCCC-cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccc
Confidence 13778899887655 5554443333 2356778899999999987677899999999886544433 333
Q ss_pred CcccccccccccCCCCCCCchhHHHHHHHHHHHcCCC
Q 012325 404 ESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQV 440 (466)
Q Consensus 404 e~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~ 440 (466)
.. +...+...||.+...|-.-|+.
T Consensus 341 ~~-------------~~~~Dl~~tAl~FRlLR~~Gy~ 364 (817)
T 3sdr_A 341 RL-------------NPIADLETTALGFRLLRLHRYN 364 (817)
T ss_dssp TT-------------CSSCCHHHHHHHHHHHHHTTCC
T ss_pred cC-------------CCCCCHHHHHHHHHHHHHcCCC
Confidence 11 1124567788888888887764
No 47
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=97.50 E-value=0.0021 Score=70.58 Aligned_cols=260 Identities=14% Similarity=0.145 Sum_probs=143.5
Q ss_pred ccccchhhHHHhhhhccc--cCCCcHHHHHHHHhhhcceeeeCCCceeecCCCCCcc----hHHHHHHHHHhcCCchhhH
Q 012325 109 YLCIGPVNKVLNMLCCWV--EDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLW----DTAFAVQAIISTNLVEEYG 182 (466)
Q Consensus 109 ~~~~~pv~~~l~~l~~~~--~~p~~~~~~~~~~~l~~~~~~~~~G~~~q~~~~s~vw----DTa~a~~AL~~ag~~~~~~ 182 (466)
.+++++-.||..++.-.. .++..|.|..++++|.+- +.+||.|-.+. +.... .|..++.||..-+..+
T Consensus 28 ~~S~S~YDTAWVamvp~~~~~~~~~p~Fp~~~~wil~n--Q~~DGsWg~~~-~~~~~d~ll~TlAcvlAL~~w~~~~--- 101 (764)
T 3p5p_A 28 DISPSAYDTAWVARLATISSDGSEKPRFPQALNWVFNN--QLQDGSWGIES-HFSLCDRLLNTTNSVIALSVWKTGH--- 101 (764)
T ss_dssp CCCCCHHHHHHHHHCEEECTTSCEEESCHHHHHHHHHC--CCTTSCCSCTT-SCCHHHHHHHHHHHHHHHHHTTCCH---
T ss_pred cccCcHHHHHHHHhCccccCCCCCCCCChHHHHHHHHc--cCCCCCCCCCC-CcchHHHHHHHHHHHHHHHHccCCH---
Confidence 345555668775544444 456677899999999776 56888875332 22233 4788999999887654
Q ss_pred HHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCc---------cCCCCCCCchhhHH-HHHHhHh--hhccccccc
Q 012325 183 ATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFS---------TADHGWPISDCTSE-GLKASLL--LSKLSSAIV 250 (466)
Q Consensus 183 ~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~---------~~~~~~pd~D~Ta~-al~aL~~--~~~~~~~~~ 250 (466)
+.++||+.||.+.= .- |.. ....+=|+-.- ..+-..| .|.+.. .+.++.. +.+.+.+..
T Consensus 102 ~~i~~Gl~fl~~nl-~~-----~~~--~~~~~vgfeiifP~ll~~a~~~gl~~p-~~~~~~~~l~~~r~~kL~~~~~~~~ 172 (764)
T 3p5p_A 102 SQVQQGAEFIAENL-RL-----LNE--EDELSPDFQIIFPALLQKAKALGINLP-YDLPFIKYLSTTREARLTDVSAAAD 172 (764)
T ss_dssp HHHHHHHHHHHHHH-TT-----CCT--TSCCCTTHHHHHHHHHHHHHHTTCCCC-TTSHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHH-Hh-----hcC--CCCCCceeeeeHHHHHHHHHHcCCCCC-CCchhHHHHHHhHHHHHhcCchhhc
Confidence 57999999998764 21 100 00000111000 0000001 111110 1111100 011110000
Q ss_pred CCc----cchHHHHHHHHH--HHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhC
Q 012325 251 GEP----IETKRLYDSVNV--IFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLY 324 (466)
Q Consensus 251 g~~----~~~~~i~~av~~--Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~ 324 (466)
+.+ -.-|.+...++| +...|..||++. .++..||+++.. .+
T Consensus 173 ~~p~~llhslE~~~~~~d~~~~~~~~~~~GS~~---------------------------~SPsaTAa~l~~---~~--- 219 (764)
T 3p5p_A 173 NIPANMLNALEGLEEVIDWNKIMRFQSKDGSFL---------------------------SSPASTACVLMN---TG--- 219 (764)
T ss_dssp SSCGGGGGGGGGSGGGCCTTGGGGGBCTTSCBT---------------------------TBHHHHHHHHHH---HC---
T ss_pred CCCchHHHHHHhccccccHHHHHhccCCCCCcc---------------------------cChHHHHHHHHh---CC---
Confidence 111 012334444555 556666666662 124567777642 11
Q ss_pred CCCchhhhHHHHHHHHHHHHHhccc-CCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCC-CC
Q 012325 325 PGHWQEDVDHCIKRAVKFIEKIQEL-DGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG-GW 402 (466)
Q Consensus 325 ~~~~~~~i~~~i~ra~~~L~~~Q~~-DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG-gW 402 (466)
-.++.+||.+.++. +|+-+..|.. ..+...+.+-.|...|..+.-.+.|+.+++.+.+.-.+.| ||
T Consensus 220 -----------d~~~~~YL~~~~~~~~g~VP~~yP~-d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~ 287 (764)
T 3p5p_A 220 -----------DEKCFTFLNNLLDKFGGCVPCMYSI-DLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGW 287 (764)
T ss_dssp -----------CHHHHHHHHHHHHHHTSCCCSSCCC-HHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCS
T ss_pred -----------ChhHHHHHHHHHHhcCCCCCCcCCC-cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccc
Confidence 13678899887655 5554443433 2356778899999999986667899999999987544433 23
Q ss_pred CCcccccccccccCCCCCCCchhHHHHHHHHHHHcCCCC
Q 012325 403 GESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQVR 441 (466)
Q Consensus 403 ge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~ 441 (466)
+.. +...+...||.+...|-.-|+.-
T Consensus 288 ~~~-------------~~~~Dl~~tAl~FRlLR~~Gy~V 313 (764)
T 3p5p_A 288 GRD-------------SLVPDLNTTALGLRTLRMHGYNV 313 (764)
T ss_dssp STT-------------CSSCCHHHHHHHHHHHHHTTCCC
T ss_pred ccC-------------CCCCCHHHHHHHHHHHHhcCCCc
Confidence 211 11345778999999998888753
No 48
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.37 E-value=0.00026 Score=78.32 Aligned_cols=108 Identities=15% Similarity=0.058 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcc---cCCCccccCCCcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccc
Q 012325 336 IKRAVKFIEKIQE---LDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKK 412 (466)
Q Consensus 336 i~ra~~~L~~~Q~---~DG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~ 412 (466)
+++-++-+++... .||.|+. =.+..|.|||+ ||...-.. ...+.-...++||++.|.+||+||......
T Consensus 56 ~~~Lie~VK~~l~~~~~~g~~g~--~S~S~YDTAWV--Amvp~~~~-~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~--- 127 (817)
T 3sdr_A 56 AEVLVSEIKAMLNPAITGDGESM--ITPSAYDTAWV--ARVPAIDG-SARPQFPQTVDWILKNQLKDGSWGIQSHFL--- 127 (817)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCC--CCCCHHHHHHH--HTCBCTTS-CSSBSSHHHHHHHHHCCCTTSCCSCTTCCC---
T ss_pred HHHHHHHHHHHhccccCCCCCcc--cccCHHHhhHH--heeecCCC-CCCCCchHHHHHHHHccCCCCCCCCCCCcc---
Confidence 3444444444433 4663321 14678999994 34322111 234566789999999999999999642100
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhccCCc
Q 012325 413 VYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLEREF 459 (466)
Q Consensus 413 ~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~~ 459 (466)
. .-...+|.-||+||..-+. ..+.|+||+.||.+.-...
T Consensus 128 ~-------~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl~~~ 166 (817)
T 3sdr_A 128 L-------SDRLLATLSCVLVLLKWNV-GDLQVEQGIEFIKSNLELV 166 (817)
T ss_dssp H-------HHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTTC
T ss_pred h-------HHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh
Confidence 0 0126889999999998653 4578999999998776544
No 49
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=97.22 E-value=0.041 Score=55.64 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHH
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHC 335 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~ 335 (466)
.+.+++-++.++..|.+||.|-..- .+- - ++.|.++.++-+.+.+......+-.+++.++
T Consensus 262 ~~~~~~~a~~~~~~q~~~G~W~~~~-----------------d~~-~--~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~ 321 (382)
T 3pmm_A 262 ITVLDAQIAALAECQDDSGLWHTLL-----------------DDP-H--SYLEASATAGFAYGILKAVRKRYVGQHYAGV 321 (382)
T ss_dssp HHHHHHHHHHHHHHCCTTSCEESBT-----------------TCT-T--SCEEHHHHHHHHHHHHHHHHTTSSCGGGHHH
T ss_pred HHHHHHHHHHHHHcCCCCCChhhcc-----------------CCC-C--CCccccHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 4667888899999999999995211 000 0 2355666655554433211111112567789
Q ss_pred HHHHHHHHHHhcccCCCccccC-CC---------------cccchHHHHHHHHHHc
Q 012325 336 IKRAVKFIEKIQELDGSWYGSW-GV---------------CFTYGTWFGVKGLVAA 375 (466)
Q Consensus 336 i~ra~~~L~~~Q~~DG~W~g~w-g~---------------~~~Y~T~~al~aL~~~ 375 (466)
++|+++-|.++-.+||.-.+-- |. ...||.+.+|.|+...
T Consensus 322 a~ka~~~l~~~i~~dG~l~~v~~gt~~g~~~~~Y~~~p~~~~~~G~~~~lla~~e~ 377 (382)
T 3pmm_A 322 AEKAIRGIVQNISPQGELLQTSFGTGMGSDLDFYRQIPLTSMPYGQAMAILCLTEY 377 (382)
T ss_dssp HHHHHHHHHHTBCTTSCBCSCBCCCCCCSSHHHHHTCCBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCEeCeecCCCCCCChhhhhcccCCCCCccHHHHHHHHHHH
Confidence 9999999999999999654310 10 1145777777776654
No 50
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=97.12 E-value=0.00074 Score=74.36 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=60.2
Q ss_pred CcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcC
Q 012325 359 VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAG 438 (466)
Q Consensus 359 ~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag 438 (466)
.+..|.|||+. |... ......+.-...++||++.|.+||+||..... .. .-...+|.-||+||..-+
T Consensus 53 S~S~YDTAWVa--mvp~-~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~---~~-------~d~l~~TlAcvlAL~~w~ 119 (785)
T 3s9v_A 53 NPSAYDTAWVA--RIPA-VDGSDNPHFPETVEWILQNQLKDGSWGEGFYF---LA-------YDRILATLACIITLTLWR 119 (785)
T ss_dssp CCCHHHHHHHT--TSBC-TTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSC---CH-------HHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHhhHHh--cccc-CCCCCCCCchHHHHHHHHccCCCCCCCCCCCC---ch-------HHHHHHHHHHHHHHHHcc
Confidence 46789999943 3321 11123456678999999999999999974110 00 012689999999999864
Q ss_pred CCCchhHHHHHHHHHhccCCc
Q 012325 439 QVRINCCCSTLKVTLSLEREF 459 (466)
Q Consensus 439 ~~~~~~i~rgv~~L~~~q~~~ 459 (466)
. ..+.|+||+.||.+.-...
T Consensus 120 ~-~~~~i~~Gl~fl~~nl~~~ 139 (785)
T 3s9v_A 120 T-GETQVQKGIEFFRTQAGKM 139 (785)
T ss_dssp C-CHHHHHHHHHHHHHHHTTG
T ss_pred c-CHHHHHHHHHHHHHHHHHh
Confidence 3 4467999999998765444
No 51
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=97.06 E-value=0.00063 Score=74.73 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcc--cCCCccccCCCcccchHHHHHHHHHHcc-CCCCCcHHHHHHHHHHHhccCCCCCCCCccccccc
Q 012325 335 CIKRAVKFIEKIQE--LDGSWYGSWGVCFTYGTWFGVKGLVAAG-MNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQK 411 (466)
Q Consensus 335 ~i~ra~~~L~~~Q~--~DG~W~g~wg~~~~Y~T~~al~aL~~~g-~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~ 411 (466)
.++.-++-+++... .+|.- .+..|.|||+ ||...- ......+.-...++||++.|.+||+||.....
T Consensus 9 ~~~~~~~~i~~~~~~~~~g~~-----S~S~YDTAWV--amvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~--- 78 (764)
T 3p5p_A 9 RADELVVKIKDMFNALGDGDI-----SPSAYDTAWV--ARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHF--- 78 (764)
T ss_dssp HHHHHHHHHHHHHHTCSSCCC-----CCCHHHHHHH--HHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSC---
T ss_pred HHHHHHHHHHHHHhcCCCCcc-----cCcHHHHHHH--HhCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCc---
Confidence 34444555554433 23332 4678999994 444221 01023456678999999999999999964210
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHcCCCCchhHHHHHHHHHhcc
Q 012325 412 KVYSNLEGDRSHVVNTAWAMLALIDAGQVRINCCCSTLKVTLSLE 456 (466)
Q Consensus 412 ~~y~~~~~~~s~~~~TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q 456 (466)
.. .-...+|.-||+||..-+. ..+.|+||+.||.+.-
T Consensus 79 ~~-------~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 79 SL-------CDRLLNTTNSVIALSVWKT-GHSQVQQGAEFIAENL 115 (764)
T ss_dssp CH-------HHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred ch-------HHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 00 0126899999999998543 3467999999998765
No 52
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.87 E-value=0.0015 Score=71.09 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=59.2
Q ss_pred CcccchHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHHcC
Q 012325 359 VCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAG 438 (466)
Q Consensus 359 ~~~~Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~ag 438 (466)
.+..|.|||+ ||... . ...|.-...++||++.|.+||+||..... .. .-...+|.-||+||..-+
T Consensus 31 S~S~YDTAWV--Amvp~--~-~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~---~~-------~D~ll~TLAcvlAL~~w~ 95 (727)
T 3pya_A 31 TISAYDTAWV--ALIDA--G-DKTPAFPSAVKWIAENQLSDGSWGDAYLF---SY-------HDRLINTLACVVALRSWN 95 (727)
T ss_dssp CCCHHHHHHH--HTCBC--S-SSSBSCHHHHHHHHHTCCTTSCCSCSSSC---CH-------HHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHhHHH--hhccC--C-CCCCCCHHHHHHHHhcCCCCCCCCCCCCc---ch-------hhHHHHHHHHHHHHHHcc
Confidence 4678999995 44422 1 12344678899999999999999964100 00 012689999999999854
Q ss_pred CCCchhHHHHHHHHHhccCCc
Q 012325 439 QVRINCCCSTLKVTLSLEREF 459 (466)
Q Consensus 439 ~~~~~~i~rgv~~L~~~q~~~ 459 (466)
. ..+.|+||+.||.+.-...
T Consensus 96 ~-~~~~i~rGl~fl~~nl~~~ 115 (727)
T 3pya_A 96 L-FPHQCNKGITFFRENIGKL 115 (727)
T ss_dssp C-CHHHHHHHHHHHHHHGGGT
T ss_pred C-CHHHHHHHHHHHHHHHHHh
Confidence 3 3568999999998765444
No 53
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=96.29 E-value=0.19 Score=50.68 Aligned_cols=177 Identities=13% Similarity=0.151 Sum_probs=99.3
Q ss_pred CCccchHHHHHHHHHHHhhc--cCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCc
Q 012325 251 GEPIETKRLYDSVNVIFSLQ--NADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHW 328 (466)
Q Consensus 251 g~~~~~~~i~~av~~Ll~~Q--n~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~ 328 (466)
|.+...+.+.+..++|...+ .++|||.....+. . ....++ +|....++..|..+++...+
T Consensus 127 gd~~Yl~~a~~~ad~L~~~~~r~~~Ggf~~~~~~~-------~-----~~~~~W----iDgl~M~~p~La~~~~~tgd-- 188 (382)
T 3pmm_A 127 GRMAYLPWLESWAEWAMHEMPRTEQGGMQHMTLAE-------E-----NHQQMW----DDTLMMTVLPLAKIGKLLNR-- 188 (382)
T ss_dssp CCGGGHHHHHHHHHHHHHTSCBCGGGCBCCCCSSC-------C-----CTTEEE----TTHHHHTHHHHHHHHHHTTC--
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCcCCCeeeecCCC-------C-----CCCcEE----ecchhhhHHHHHHHHHHHCC--
Confidence 34456778888889998765 4578884221100 0 011111 23334555666666654322
Q ss_pred hhhhHHHHHHHHHHHHHhcc-cCCCccccC---------CCcccchHHHHHHHHHHcc----CCCCCc-------HHHHH
Q 012325 329 QEDVDHCIKRAVKFIEKIQE-LDGSWYGSW---------GVCFTYGTWFGVKGLVAAG----MNYSNS-------SSIRK 387 (466)
Q Consensus 329 ~~~i~~~i~ra~~~L~~~Q~-~DG~W~g~w---------g~~~~Y~T~~al~aL~~~g----~~~~~~-------~~i~r 387 (466)
.+-++.+++....+....+. ++|.|+-.| ..+..-|.+|++.||..+- .+ ..+ ..+++
T Consensus 189 ~~y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l~~l~~p-~~~~~~~~~~~~~~~ 267 (382)
T 3pmm_A 189 PQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFLELVDLP-EGNAVRRYLITVLDA 267 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHHHHHHHHHHHHHHHCCC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceecccccHHHHHHHHHHHhhcCC-cchhhHHHHHHHHHH
Confidence 12233455555555555664 568885433 2334557889999887642 22 122 45667
Q ss_pred HHHHHHhccCCCCCCCCcccccccccccCCCCCCCchhHH---HHHHHHHHHcCCCCc---hhHHHHHHHHHhc
Q 012325 388 ACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNT---AWAMLALIDAGQVRI---NCCCSTLKVTLSL 455 (466)
Q Consensus 388 a~~~Ll~~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~T---A~ALlaL~~ag~~~~---~~i~rgv~~L~~~ 455 (466)
.++.|++.|.+||-|..... ..+ .| ...|.| |+||+-....|..+. +.++|+++-|.+.
T Consensus 268 ~a~~~~~~q~~~G~W~~~~d-~~~-~y-------~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~ 332 (382)
T 3pmm_A 268 QIAALAECQDDSGLWHTLLD-DPH-SY-------LEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQN 332 (382)
T ss_dssp HHHHHHHHCCTTSCEESBTT-CTT-SC-------EEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCChhhccC-CCC-CC-------ccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhh
Confidence 89999999999999974321 110 22 123444 555555555555443 3577888888765
No 54
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.23 E-value=0.21 Score=51.39 Aligned_cols=215 Identities=12% Similarity=0.073 Sum_probs=117.9
Q ss_pred CCCcchHHHHHHHHHhc---CCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHH
Q 012325 159 GSQLWDTAFAVQAIIST---NLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEG 235 (466)
Q Consensus 159 ~s~vwDTa~a~~AL~~a---g~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~a 235 (466)
...++|.++.+.+|.+. ...+++.+.+.+..+||...|.+. .. ||+-........--+|+--++
T Consensus 141 ~~~LDD~g~~~~~Li~lY~~T~d~~yl~~a~~~ad~L~~~~pRt-~~------------Ggf~h~~~~~~q~WiD~lyM~ 207 (445)
T 3k11_A 141 PHALDDAGAVCTAMIKLRLKDESLPVDGLIQNYFDFIINKEYRL-AD------------GTFARNRPQRNTLWLDDMFMG 207 (445)
T ss_dssp CCSGGGTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHTSCBC-TT------------CCBCBCSSSTTEEETHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCC-CC------------CceeecCCCCCceEecchhhH
Confidence 45789999777777653 334467889999999999998764 11 554432211111114444356
Q ss_pred HHHhHhhhcccccccCCc---cchHHHHHHHHHHHhhccC-CCceec-cccccccccccccCcccccCCccccCCCCCcH
Q 012325 236 LKASLLLSKLSSAIVGEP---IETKRLYDSVNVIFSLQNA-DGGFAT-YELMRSYPWLEVLNPAETFGDIVIDYPCVECT 310 (466)
Q Consensus 236 l~aL~~~~~~~~~~~g~~---~~~~~i~~av~~Ll~~Qn~-dGgw~~-~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~T 310 (466)
+-.|..+.... |.+ ..++++.........++++ +|-|-- +...+.. .++ ..+ .-..
T Consensus 208 ~pfla~~~~~t----gd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~-----~~~-~~W---------aRGn 268 (445)
T 3k11_A 208 IPAVAQMSRYD----KEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTD-----HPA-FCW---------ARAN 268 (445)
T ss_dssp HHHHHHHHHHC----GGGHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSS-----CCC-CCB---------HHHH
T ss_pred HHHHHHHHHHH----CCcchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCC-----CCc-cee---------cccc
Confidence 55555554322 111 1133333333344445655 454421 1110000 000 001 1134
Q ss_pred HHHHHHHHhhhhhCCC-C-chhhhHHHHHHHHHHHHHhcccCCCccccCC--Ccc--cchHHHHHHHHHH---ccCCC--
Q 012325 311 SASIQALTSFKKLYPG-H-WQEDVDHCIKRAVKFIEKIQELDGSWYGSWG--VCF--TYGTWFGVKGLVA---AGMNY-- 379 (466)
Q Consensus 311 a~vl~aL~~~~~~~~~-~-~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~wg--~~~--~Y~T~~al~aL~~---~g~~~-- 379 (466)
+-++.+|..+-...|. + .+.++....++.+++|++.|.+||.|...-. .+| +.+|+....||.. .|...
T Consensus 269 GW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~~ 348 (445)
T 3k11_A 269 GWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDAI 348 (445)
T ss_dssp HHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCHH
Confidence 4455666655433332 1 2466778899999999999999999964221 222 3456666666643 34320
Q ss_pred CCcHHHHHHHHHHHhccCCCCCCCCc
Q 012325 380 SNSSSIRKACEFLLSKQRPSGGWGES 405 (466)
Q Consensus 380 ~~~~~i~ra~~~Ll~~Q~~DGgWge~ 405 (466)
...+.++||.+-|.++-++||--+..
T Consensus 349 ~Y~~~A~ka~~~L~~~i~~dG~l~~v 374 (445)
T 3k11_A 349 AYGPVAQLGWHAVAGKINEEGQVEGT 374 (445)
T ss_dssp HHHHHHHHHHHHHHTTBCTTSCBCSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEece
Confidence 12367889999999998999854433
No 55
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=95.95 E-value=0.029 Score=56.34 Aligned_cols=122 Identities=11% Similarity=0.214 Sum_probs=75.0
Q ss_pred HHHHHHHH-HhhccCCCce-eccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHH
Q 012325 259 LYDSVNVI-FSLQNADGGF-ATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCI 336 (466)
Q Consensus 259 i~~av~~L-l~~Qn~dGgw-~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i 336 (466)
+++.+.|. ...+..+||| ..|..+.. . +| .+ -..+..++.+.+++.+.... ...+++...+
T Consensus 17 ~~~~l~fw~~~~~D~~GGf~~~~~~d~~--~---~~-~e---------K~l~~nar~i~~~a~a~~~~--~~~~~~~~~A 79 (388)
T 2gz6_A 17 LNDVLPFWENHSLDSEGGYFTCLDRQGK--V---YD-TD---------KFIWLQNRQVWTFSMLCNQL--EKRENWLKIA 79 (388)
T ss_dssp HHTHHHHHHHHCBCTTSSBCCEEBTTSC--E---EE-CC---------EEHHHHHHHHHHHHHHHHHT--CCCHHHHHHH
T ss_pred HHhHHHHHHhcCCCCCCCEEeEECCCCC--c---CC-cc---------hhHHHHHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 45566666 5567778895 55654432 1 11 00 11456889999888865531 1124567889
Q ss_pred HHHHHHHHHh-cccCCCccccC---C-----CcccchHHHHHHHHHHccCCC---CCcHHHHHHHHHHHhccC
Q 012325 337 KRAVKFIEKI-QELDGSWYGSW---G-----VCFTYGTWFGVKGLVAAGMNY---SNSSSIRKACEFLLSKQR 397 (466)
Q Consensus 337 ~ra~~~L~~~-Q~~DG~W~g~w---g-----~~~~Y~T~~al~aL~~~g~~~---~~~~~i~ra~~~Ll~~Q~ 397 (466)
+++++||++. +.++|+|+... | ....|+-++++.||..+.... ..-+..++..++++++..
T Consensus 80 ~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~ 152 (388)
T 2gz6_A 80 RNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKD 152 (388)
T ss_dssp HHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999998 66789987432 1 245688889999987643210 112345567778888764
No 56
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=95.83 E-value=0.19 Score=50.46 Aligned_cols=139 Identities=9% Similarity=0.091 Sum_probs=73.9
Q ss_pred CcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHH-hc-ccCCCccccCC----------------CcccchHHHHH
Q 012325 308 ECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEK-IQ-ELDGSWYGSWG----------------VCFTYGTWFGV 369 (466)
Q Consensus 308 ~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~-~Q-~~DG~W~g~wg----------------~~~~Y~T~~al 369 (466)
|+...++..|..+++...+ +++.+.+.+-+.+..+ .+ .++|-|+-.|. .....|.+|++
T Consensus 143 D~l~m~~p~L~~l~~~tgd---~~y~d~A~~~~~~~~~~l~D~~tGl~~h~~~~~~~~~w~d~~tg~~~~~WaRg~gW~~ 219 (373)
T 1nc5_A 143 DGLYMGGPFALKYANLKQE---TELFDQVVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWYV 219 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTC---THHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHhcCCCCCCEEeecCCccccccccccCCCCCCcccchHhHHH
Confidence 3444556666666543221 1222333343444433 34 34677743221 12345788999
Q ss_pred HHHHHccCC-CCC-------cHHHHHHHHHHHhccCC-CCCCCCcccccccccccCCCCCCCchhHHHHHHHHHHH---c
Q 012325 370 KGLVAAGMN-YSN-------SSSIRKACEFLLSKQRP-SGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALID---A 437 (466)
Q Consensus 370 ~aL~~~g~~-~~~-------~~~i~ra~~~Ll~~Q~~-DGgWge~~~s~~~~~y~~~~~~~s~~~~TA~ALlaL~~---a 437 (466)
.||..+-.. +.+ -...++.+++|++.|.+ ||-|.. .... +.+ +++.-..|.||...-+|+. .
T Consensus 220 ~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~-~ld~--~~~---~~~~~EsSatA~~ay~l~~g~~~ 293 (373)
T 1nc5_A 220 MSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQ-IVDK--GDR---SDNWLESSGSCLYMYAIAKGINK 293 (373)
T ss_dssp HHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBS-BTTC--TTS---TTCCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceee-ecCC--CCC---CCCCccccHHHHHHHHHHHHHHC
Confidence 999765321 111 13456678999999997 999973 2111 110 1222234556555555554 4
Q ss_pred CCCC---chhHHHHHHHHHhc
Q 012325 438 GQVR---INCCCSTLKVTLSL 455 (466)
Q Consensus 438 g~~~---~~~i~rgv~~L~~~ 455 (466)
|..+ .+.++|+++.|.+.
T Consensus 294 g~l~~~Y~~~a~k~~~~l~~~ 314 (373)
T 1nc5_A 294 GYLDRAYETTLLKAYQGLIQH 314 (373)
T ss_dssp TSSCGGGHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHh
Confidence 6543 34588899988763
No 57
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=95.54 E-value=0.37 Score=48.25 Aligned_cols=91 Identities=15% Similarity=0.234 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhhhCCCC--chhhhHHHHHHHHHHHHHhccc-CCCccccC-----CCcc--cchHHHHHHHHHHc---c
Q 012325 310 TSASIQALTSFKKLYPGH--WQEDVDHCIKRAVKFIEKIQEL-DGSWYGSW-----GVCF--TYGTWFGVKGLVAA---G 376 (466)
Q Consensus 310 Ta~vl~aL~~~~~~~~~~--~~~~i~~~i~ra~~~L~~~Q~~-DG~W~g~w-----g~~~--~Y~T~~al~aL~~~---g 376 (466)
.+-++.+|..+-+..|.. .++++....++-+++|.+.|.+ ||.|.... ..+| +-+|++...+|... |
T Consensus 215 ~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g 294 (373)
T 1nc5_A 215 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKG 294 (373)
T ss_dssp HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCC
Confidence 445777777665443432 2355677888999999999997 99997321 1222 34566666666653 3
Q ss_pred CC-CCCcHHHHHHHHHHHhc---cCCCC
Q 012325 377 MN-YSNSSSIRKACEFLLSK---QRPSG 400 (466)
Q Consensus 377 ~~-~~~~~~i~ra~~~Ll~~---Q~~DG 400 (466)
.. ....+.++|+.+.|.++ .++||
T Consensus 295 ~l~~~Y~~~a~k~~~~l~~~~~~~~~dG 322 (373)
T 1nc5_A 295 YLDRAYETTLLKAYQGLIQHKTETSEDG 322 (373)
T ss_dssp SSCGGGHHHHHHHHHHHHHHHEEECTTS
T ss_pred CCcHHHHHHHHHHHHHHHHhceeECCCC
Confidence 21 13457889999999884 57888
No 58
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=95.30 E-value=0.57 Score=46.68 Aligned_cols=269 Identities=12% Similarity=-0.016 Sum_probs=121.2
Q ss_pred HHHHHHhhhcceeeeCCCce-eecC------CCCCcchHHHHHHHHHhcCC---chhhHHHHHHHHHHHHhccccCCCCC
Q 012325 134 FKLHIPRINDYLWIAEDGMK-VQGY------NGSQLWDTAFAVQAIISTNL---VEEYGATLKKAHKYIKDSQVLEDCPG 203 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~~G~~-~q~~------~~s~vwDTa~a~~AL~~ag~---~~~~~~~l~~a~~wL~~~Q~~~~~~G 203 (466)
.+++++.|.+.++..++|+. .... ....+++.|+++.||.+... .+++.+..++..++|++....+ .|
T Consensus 79 A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~d~--~g 156 (388)
T 2gz6_A 79 ARNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKDNP--KG 156 (388)
T ss_dssp HHHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC--Cc
Confidence 44566666666553333432 1111 13568999999999987421 2345556677777777765321 12
Q ss_pred CcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhh--ccCCCceecc-c
Q 012325 204 NLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSL--QNADGGFATY-E 280 (466)
Q Consensus 204 dw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~--Qn~dGgw~~~-~ 280 (466)
-|...++ ++. .....++.+..+.+|+.+.+.. +.+...+...+.++.+... +.++|++..| .
T Consensus 157 ~~~~~~~-----~~~------~~~~~~~~~~~~~all~l~~~t----~d~~~~~~A~~~~~~~~~~~~~~~~g~~~e~~~ 221 (388)
T 2gz6_A 157 KYTKTYP-----GTR------PMKALAVPMILANLTLEMEWLL----PQETLENVLAATVQEVMGDFLDQEQGLMYENVA 221 (388)
T ss_dssp -------------CC------CCEETHHHHHHHHHHHHTGGGS----CHHHHHHHHHHHHHHHHHTTEETTTTEECSEEC
T ss_pred ccCcccC-----CCC------CCCCCCHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEC
Confidence 2221111 111 1122466667777777665422 2222345556666666653 2245665432 2
Q ss_pred cccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHh-cccC-CCcccc--
Q 012325 281 LMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKI-QELD-GSWYGS-- 356 (466)
Q Consensus 281 ~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~-Q~~D-G~W~g~-- 356 (466)
.+ | +.++ .. .++ .+.|+..-..+.. |..+..... .+++.+..++.++++.+. -.++ |++...
T Consensus 222 ~~----w-~~~~-~~-~~~-~~~pgh~~e~a~l---L~~~~~~tg---d~~~~~~A~~~~~~~~~~g~d~~~Gg~~~~~~ 287 (388)
T 2gz6_A 222 PD----G-SHID-CF-EGR-LINPGHGIEAMWF---IMDIARRKN---DSKTINQAVDVVLNILNFAWDNEYGGLYYFMD 287 (388)
T ss_dssp TT----S-CCCC-ST-TTT-EECHHHHHHHHHH---HHHHHHHTT---CHHHHHHHHHHHHHHHHHHBCTTTCSBCSCEE
T ss_pred CC----C-CCCC-Cc-ccC-cCCCCHHHHHHHH---HHHHHHHcC---CHHHHHHHHHHHHHHHHHhccCCCCCEEEeec
Confidence 21 1 1010 00 111 1222111112222 222222211 133445666667776543 4555 666421
Q ss_pred C-CCc---------ccchHHHHHHHHHHc----cCCCCCcHHHHHHHHHHHhcc--CCCCCCCCcccccccccccCCCCC
Q 012325 357 W-GVC---------FTYGTWFGVKGLVAA----GMNYSNSSSIRKACEFLLSKQ--RPSGGWGESYLSCQKKVYSNLEGD 420 (466)
Q Consensus 357 w-g~~---------~~Y~T~~al~aL~~~----g~~~~~~~~i~ra~~~Ll~~Q--~~DGgWge~~~s~~~~~y~~~~~~ 420 (466)
+ |.+ ...+.+.++.|+..+ |.. ..-+..++..+|+.++. .++|+|-........+. .+.+++
T Consensus 288 ~~g~~~~~~~~~~~~~W~qae~i~a~~~ly~~tgd~-~yl~~a~~~~~~~~~~~~D~~~G~w~~~l~~~g~~~-~~~~~~ 365 (388)
T 2gz6_A 288 AAGHPPQQLEWDQKLWWVHLESLVALAMGYRLTGRD-ACWAWYQKMHDYSWQHFADPEYGEWFGYLNRRGEVL-LNLKGG 365 (388)
T ss_dssp TTSCCCSCTTTTCEEHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHBCTTTSSBCCEECTTSCBS-SCBSCC
T ss_pred CCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHhCcCCCCCceEEeeCCCcCCC-CcCCCC
Confidence 1 221 122345566665443 322 12234567788877665 46899976433221111 111222
Q ss_pred C-CchhHHHHHHHHHH
Q 012325 421 R-SHVVNTAWAMLALI 435 (466)
Q Consensus 421 ~-s~~~~TA~ALlaL~ 435 (466)
. .++.++.-|++-++
T Consensus 366 ~~K~~YH~~~~~~~~~ 381 (388)
T 2gz6_A 366 KWKGCFHVPRAMYLCW 381 (388)
T ss_dssp SSCSSSHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHH
Confidence 2 26778777765443
No 59
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=93.59 E-value=1.2 Score=48.20 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=58.3
Q ss_pred chHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhh
Q 012325 163 WDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLL 242 (466)
Q Consensus 163 wDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~ 242 (466)
-|++++++||..+|.+ +..++.++||.+.|..+ |++...+. ..|. ++ -+-+-.|.|+..|.++..+
T Consensus 343 RD~~~~~~al~~~G~~----~~a~~~l~~l~~~q~~~---G~~~~~~~--~~G~-p~----w~~~Q~D~~g~~l~~~~~~ 408 (684)
T 1lf6_A 343 RDLYHVANAFIAAGDV----DSANRSLDYLAKVVKDN---GMIPQNTW--ISGK-PY----WTGIQLDEQADPIILSYRL 408 (684)
T ss_dssp HHHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHH---SSCCSCBC--TTSC-BC----CCCCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCCH----HHHHHHHHHHHhhcCCC---CCccccee--CCCC-cc----cCCccccchHHHHHHHHHH
Confidence 5799999999998864 34788999999999865 66532222 1121 11 1114589999999887654
Q ss_pred hcccccccCCccchHH-HHHHHHHHHhh
Q 012325 243 SKLSSAIVGEPIETKR-LYDSVNVIFSL 269 (466)
Q Consensus 243 ~~~~~~~~g~~~~~~~-i~~av~~Ll~~ 269 (466)
.+. | .-+. ++++++|+...
T Consensus 409 ~~~-----g---~~~~~v~~al~~i~~~ 428 (684)
T 1lf6_A 409 KRY-----D---LYDSLVKPLADFIIKI 428 (684)
T ss_dssp TCG-----G---GTTTTHHHHHHHHHHH
T ss_pred HHc-----C---chHHHHHHHHHHHHHh
Confidence 321 2 2456 99999999986
No 60
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=93.04 E-value=2.1 Score=43.00 Aligned_cols=149 Identities=12% Similarity=0.069 Sum_probs=85.7
Q ss_pred CCcchHHHHHHHHHhcCC---chhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCC-----Cchh
Q 012325 160 SQLWDTAFAVQAIISTNL---VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWP-----ISDC 231 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~---~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~p-----d~D~ 231 (466)
-.+|+++..+.+++.+.. .+++.+..+++++||.+.-..+ ..|||.++.+ .+-| ..++
T Consensus 49 k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d~-------------~~Gg~~~~~~-dG~~~~~~~~lyd 114 (402)
T 3gt5_A 49 RHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNP-------------ATGGYAWTLC-DDRVEDDTNHCYG 114 (402)
T ss_dssp EEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBCT-------------TTSCBCSEEE-TTEEEECCEEHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCccC-------------CCCcEEEEee-CCCCCcCCcchHH
Confidence 458899999999887632 3456788899999998753221 1177777763 3322 3577
Q ss_pred hHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhh-ccCC-Ccee-ccccccccccccccCcccccCCccccCCCCC
Q 012325 232 TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSL-QNAD-GGFA-TYELMRSYPWLEVLNPAETFGDIVIDYPCVE 308 (466)
Q Consensus 232 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~-Qn~d-Ggw~-~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~ 308 (466)
-|.++.||..... .+.+...+...+..++|... ..++ |++. ++..+ |- + ..++...
T Consensus 115 ~Af~i~al~~~~~-----tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~~----~~--~----------~~~~~~n 173 (402)
T 3gt5_A 115 LAFVMLAYSCGLK-----VGIKQAREWMDETWCLLERHFWDAEYGLYKDEADAQ----WN--F----------TRYRGQN 173 (402)
T ss_dssp HHHHHHHHHHHHH-----TTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTT----CC--B----------CSCEEHH
T ss_pred HHHHHHHHHHHHH-----hCChhHHHHHHHHHHHHHHHhcCCcCCCchhhhCCC----CC--C----------CCCCCCC
Confidence 8999988877433 23333445666667777664 4444 5542 12211 00 0 0111223
Q ss_pred cHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHh
Q 012325 309 CTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKI 346 (466)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~ 346 (466)
..++++++|..+.....+ +++.+.+++.++.+...
T Consensus 174 ~~m~l~eall~L~~~tgd---~~~~~~a~~l~~~~~~~ 208 (402)
T 3gt5_A 174 ANMHMCEAMLAAYEASGE---QRYLERALVLADRITRR 208 (402)
T ss_dssp HHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHH
Confidence 345566666666543222 34456667777776654
No 61
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=92.08 E-value=4.8 Score=40.29 Aligned_cols=192 Identities=13% Similarity=0.093 Sum_probs=97.6
Q ss_pred Ccc-hHHHHHHHHHhcCC---chhhHHHHHHHHHHHHhccccCCCCCC-cccccCCCCCCCCCCccCCCCCCCchhh---
Q 012325 161 QLW-DTAFAVQAIISTNL---VEEYGATLKKAHKYIKDSQVLEDCPGN-LDFWYRHISKGAWPFSTADHGWPISDCT--- 232 (466)
Q Consensus 161 ~vw-DTa~a~~AL~~ag~---~~~~~~~l~~a~~wL~~~Q~~~~~~Gd-w~~~~~~~~~GGW~f~~~~~~~pd~D~T--- 232 (466)
+++ ||-+.+.+|..++. .+++.+...++.+++++...+++ |. +.+.+-+...|-+-....-++| .|+.
T Consensus 145 ~~iID~mmni~~L~~A~~~~gd~~y~~~A~~~a~~~l~~~~r~d--gs~~h~~~~D~~tG~~~~~~t~qG~--~dds~Wa 220 (377)
T 2ahf_A 145 RIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFLVRGD--DSSYHTFYFDPENGNAIRGGTHQGN--TDGSTWT 220 (377)
T ss_dssp EEEGGGGGGHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTBBTT--SCBCSEEEECTTTCCEEEEECSSSS--STTSCBH
T ss_pred eEEechHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCC--CCeEEEEEeeCCCCCeeeCCCcCCc--CCcchhH
Confidence 444 67777778875432 24567788888999999988742 32 2222222223433111112333 3454
Q ss_pred ---HHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCc
Q 012325 233 ---SEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVEC 309 (466)
Q Consensus 233 ---a~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~ 309 (466)
|-++.++..+-+. .+.+..-+...+..++++.....||+. .|+.... .++ ....|+| .
T Consensus 221 RGqAw~i~gl~~ly~~----T~d~~yL~~A~~la~~~l~~~~~d~~p-ywd~~~~-----~~~------~~~~d~S---a 281 (377)
T 2ahf_A 221 RGQAWGIYGFALNSRY----LGNADLLETAKRMARHFLARVPEDGVV-YWDFEVP-----QEP------SSYRDSS---A 281 (377)
T ss_dssp HHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTCCTTSSC-BSBTTSC-----CCT------TSCBCHH---H
T ss_pred HHHHHHHHHHHHHHHH----HCChHHHHHHHHHHHHHHHhhHHhCCc-ccccCCC-----ccC------CCccCCC---H
Confidence 7777787765432 122222345566678888888667762 1322110 000 0011222 2
Q ss_pred HHHHHHHHHhhhhhCCC--CchhhhHHHHHHHHHHHHHhc------ccCCCc-------ccc--CCCcccchHHHHHHHH
Q 012325 310 TSASIQALTSFKKLYPG--HWQEDVDHCIKRAVKFIEKIQ------ELDGSW-------YGS--WGVCFTYGTWFGVKGL 372 (466)
Q Consensus 310 Ta~vl~aL~~~~~~~~~--~~~~~i~~~i~ra~~~L~~~Q------~~DG~W-------~g~--wg~~~~Y~T~~al~aL 372 (466)
++.+..+|..+....+. ...+++.+...+.++-|.+.- +.+|-. +.. ..++.+||-.+-++||
T Consensus 282 ~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~~~y~~~~~~~~~g~L~h~~~~~~~~~~~d~~~~ygDy~~~Eal 361 (377)
T 2ahf_A 282 SAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDGYAERDDGEAEGFIRRGSYHVRGGISPDDYTIWGDYYYLEAL 361 (377)
T ss_dssp HHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHHTBCCCCSSCCCSBSCBCSBTTTTBSSSBCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCcCccHHHHHHHHHH
Confidence 33333344444333221 112446677888888877653 233322 110 1235678888888888
Q ss_pred HHc
Q 012325 373 VAA 375 (466)
Q Consensus 373 ~~~ 375 (466)
...
T Consensus 362 ~r~ 364 (377)
T 2ahf_A 362 LRL 364 (377)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 62
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=91.79 E-value=8.8 Score=38.39 Aligned_cols=126 Identities=11% Similarity=0.036 Sum_probs=63.4
Q ss_pred HHHHHHhhhcceeeeC-CCceeecCC------CCCcchHHHHHHHHHh---cCCchhhHHHHHHHHHHHHhccccCCCCC
Q 012325 134 FKLHIPRINDYLWIAE-DGMKVQGYN------GSQLWDTAFAVQAIIS---TNLVEEYGATLKKAHKYIKDSQVLEDCPG 203 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~-~G~~~q~~~------~s~vwDTa~a~~AL~~---ag~~~~~~~~l~~a~~wL~~~Q~~~~~~G 203 (466)
.+++++.|.+.++..+ +|....-.+ .-.++|.||+++||.+ +|- +++.+..++..++|.+.-... ..|
T Consensus 77 A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~~~~~tgd-~~~l~~A~~l~~~i~~~f~d~-~~G 154 (402)
T 3gt5_A 77 VHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLKVGI-KQAREWMDETWCLLERHFWDA-EYG 154 (402)
T ss_dssp HHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHHHHHTEET-TTT
T ss_pred HHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHHHHHHhCC-hhHHHHHHHHHHHHHHHhcCC-cCC
Confidence 3466666766555433 332211011 2367999999999997 342 334566677777777663221 112
Q ss_pred CcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhh-ccCC
Q 012325 204 NLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSL-QNAD 273 (466)
Q Consensus 204 dw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~-Qn~d 273 (466)
.+...+. +.|.. ..++.....+.++.+++.+... .+.+...+.+++.++.+... .+++
T Consensus 155 ~~~~~~~----~~~~~----~~~~~~n~~m~l~eall~L~~~----tgd~~~~~~a~~l~~~~~~~f~~~~ 213 (402)
T 3gt5_A 155 LYKDEAD----AQWNF----TRYRGQNANMHMCEAMLAAYEA----SGEQRYLERALVLADRITRRQAAKA 213 (402)
T ss_dssp EECCEEC----TTCCB----CSCEEHHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHTHHHHTT
T ss_pred CchhhhC----CCCCC----CCCCCCCHHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHhhCcc
Confidence 2110000 12220 1123344455566666666542 23333456677777777653 3444
No 63
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=91.55 E-value=2.7 Score=47.66 Aligned_cols=90 Identities=11% Similarity=-0.008 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhHh
Q 012325 162 LWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLL 241 (466)
Q Consensus 162 vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~~ 241 (466)
+.|++++++||..+|.++ ..++.++||.+.|..+ +|.+..+|.-.-.-+|. -+-.|.|+..+.++..
T Consensus 331 ~RDaa~t~~all~~G~~e----~A~~~l~~L~~~Q~~~--~G~~~~~y~i~G~~~w~-------~~Q~D~~g~~l~~~~~ 397 (1020)
T 1ulv_A 331 ARDMYQSVTALLAAGDEE----AAARGVEWLFTYQQQP--DGHFPQTSRVDGTIGQN-------GIQLDETAFPILLANQ 397 (1020)
T ss_dssp HHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHTCCT--TSCCCSCBCTTSCBCCC-------CCBTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCHH----HHHHHHHHHHHHhcCC--CCCeeeEEecCCCcCCC-------CccCccchHHHHHHHH
Confidence 468999999999998643 4688999999999422 37776665421111121 1356999999998877
Q ss_pred hhcccccccCCccchHHHHHHHHHHHhh
Q 012325 242 LSKLSSAIVGEPIETKRLYDSVNVIFSL 269 (466)
Q Consensus 242 ~~~~~~~~~g~~~~~~~i~~av~~Ll~~ 269 (466)
+.+. +..+-.+.++++++|+...
T Consensus 398 ~~~~-----d~~~w~~~v~~al~~i~~~ 420 (1020)
T 1ulv_A 398 IGRT-----DAGFYRNELKPAADYLVAA 420 (1020)
T ss_dssp HTCC-----CHHHHHHTHHHHHHHHHHH
T ss_pred HHhc-----CHHHHHHHHHHHHHHHHHh
Confidence 6432 1122223799999999987
No 64
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=91.05 E-value=7.9 Score=38.97 Aligned_cols=218 Identities=12% Similarity=0.111 Sum_probs=107.5
Q ss_pred HHHHHHhhhcceeeeCCCceeecCC-------CCCcchHHHHHHHHHhcCC---chhhHHHHHHHHHHHHhccccCCCCC
Q 012325 134 FKLHIPRINDYLWIAEDGMKVQGYN-------GSQLWDTAFAVQAIISTNL---VEEYGATLKKAHKYIKDSQVLEDCPG 203 (466)
Q Consensus 134 ~~~~~~~l~~~~~~~~~G~~~q~~~-------~s~vwDTa~a~~AL~~ag~---~~~~~~~l~~a~~wL~~~Q~~~~~~G 203 (466)
+.++.+.|..- + ++.+..+|..+ ..-+-|+.+.+.+|..++. .+++.+...++.+++++...+++ |
T Consensus 139 ~~~aA~~L~~r-~-~~~~g~iqsw~~~~~~~~~~~iID~~mni~~L~~A~~~~gd~~y~~~A~~ha~~~l~~~~r~d--g 214 (397)
T 2zzr_A 139 TIKAADKLMER-Y-QEKGGFIQAWGELGYKEHYRLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASANNVVRDD--S 214 (397)
T ss_dssp HHHHHHHHHTT-E-ETTTTEECCSSSTTCGGGCEEETTHHHHTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTT--S
T ss_pred HHHHHHHHHHH-h-CcCCCEEEecccCCCCCCCceeechHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCC--C
Confidence 34445555332 1 45554455331 2223478888888887643 24566777888899999887752 2
Q ss_pred Cc-ccccCCCCCCCCCCccCCCCCCCchhh------HHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCce
Q 012325 204 NL-DFWYRHISKGAWPFSTADHGWPISDCT------SEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGF 276 (466)
Q Consensus 204 dw-~~~~~~~~~GGW~f~~~~~~~pd~D~T------a~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw 276 (466)
.- ...+-+...|-+.....-++| .|+. |.++.++..+.+. .+++..-+...+..++++..-..||+
T Consensus 215 s~~h~~~~d~~~G~~~~~~t~qGy--~dds~WaRGqAw~i~gl~~lY~~----T~d~~yL~~A~~la~~~l~~~~~d~~- 287 (397)
T 2zzr_A 215 SAFHTFYFDPETGEPLKGVTRQGY--SDESSWARGQAWGIYGIPLSYRK----MKDYQQIILFKGMTNYFLNRLPEDKV- 287 (397)
T ss_dssp CBCSEEEECTTTCCEEEEECTTSS--STTSCBHHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHTCCTTSC-
T ss_pred CeEEEEEeeCCCCCcccCCccccc--CcchhhHHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHhhHHhCC-
Confidence 21 111112223433211112333 3554 8888888776432 12222233344555677765544555
Q ss_pred eccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhh--hHHHHHHHHHHHHHhc------c
Q 012325 277 ATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQED--VDHCIKRAVKFIEKIQ------E 348 (466)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~--i~~~i~ra~~~L~~~Q------~ 348 (466)
+.|+..... + + ....|+ ..++.+..+|..+....+....++ +.+...+.++-+.+.- +
T Consensus 288 pywdt~~~~-----~-~-----~~~~D~---Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~~~y~~~~~~~ 353 (397)
T 2zzr_A 288 SYWDLIFTD-----G-S-----GQPRDT---SATATAVCGIHEMLKYLPEVDPDKETYKYAMHTMLRSLIEQYSNNELIA 353 (397)
T ss_dssp CBSBTTCCT-----T-S-----CCCBCH---HHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHHHHHTBCCCCCT
T ss_pred ccccCCCCC-----C-C-----CCcCCC---CHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 223321110 0 0 011222 223333344444443322211233 5677788888777653 1
Q ss_pred cCCCcc---ccC------CCcccchHHHHHHHHHHcc
Q 012325 349 LDGSWY---GSW------GVCFTYGTWFGVKGLVAAG 376 (466)
Q Consensus 349 ~DG~W~---g~w------g~~~~Y~T~~al~aL~~~g 376 (466)
.+|--. +.+ .++.+||-.+-++||....
T Consensus 354 ~~glL~h~~~~~~~~~~~d~~~~~gDYy~~Eal~r~~ 390 (397)
T 2zzr_A 354 GRPLLLHGVYSWHSGKGVDEGNIWGDYYYLEALIRFY 390 (397)
T ss_dssp TCCSBCCEEEETTTTEEEEECBHHHHHHHHHHHHHHH
T ss_pred CCceeeeceeeCCCCCCCCCCcchHHHHHHHHHHHHh
Confidence 222211 011 1356899999999998763
No 65
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=89.68 E-value=4.6 Score=41.95 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=56.3
Q ss_pred cchHHHHHHHHHhcCCch----hhHHHHHHHHHHHHhccccCCCCCCcc----------cccCCCC--CCCCCCccCCCC
Q 012325 162 LWDTAFAVQAIISTNLVE----EYGATLKKAHKYIKDSQVLEDCPGNLD----------FWYRHIS--KGAWPFSTADHG 225 (466)
Q Consensus 162 vwDTa~a~~AL~~ag~~~----~~~~~l~~a~~wL~~~Q~~~~~~Gdw~----------~~~~~~~--~GGW~f~~~~~~ 225 (466)
+-|.++++.||...|... ...+.+++-++|....|...++.|.|. .+..+.. .++|+
T Consensus 68 ~RDaa~t~~aL~~~g~~~~~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~~~~~~glgep~y~vdG~~~~~~w~------- 140 (492)
T 2fba_A 68 TRDSAITFLTVLSELEDNNFNTTLAKAVEYYINTSYNLQRTSNPSGSFDDENHKGLGEPKFNTDGSAYTGAWG------- 140 (492)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEECTTSCBCCSCCS-------
T ss_pred cchHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHhcccCCCCCcCcccccccCceeeccCCCcCCcccC-------
Confidence 458999999999887521 123445555665334554333457776 2222211 23443
Q ss_pred CCCchhhHHHHHHhHhhhccccccc----------C------CccchHHHHHHHHHHHhhc
Q 012325 226 WPISDCTSEGLKASLLLSKLSSAIV----------G------EPIETKRLYDSVNVIFSLQ 270 (466)
Q Consensus 226 ~pd~D~Ta~al~aL~~~~~~~~~~~----------g------~~~~~~~i~~av~~Ll~~Q 270 (466)
.|-.|.+|..+.+|....+.-.... + ..+..+.|++.++|+...=
T Consensus 141 ~~Q~D~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~w 201 (492)
T 2fba_A 141 RPQNDGPALRAYAISRYLNDVNSLNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYW 201 (492)
T ss_dssp CCBTTHHHHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHT
T ss_pred CccccchhHHHHHHHHHHHHhhccccchhhhhhhccccccccHHHHHHHHHHHHHHHHHhc
Confidence 2567999998888764321100000 0 0111257889999998753
No 66
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=89.45 E-value=4.1 Score=43.16 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHhhccCCCceeccccccccccccc----------cCcccccCCccccCCCCCcHHHHHHHHHhhhhh--
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEV----------LNPAETFGDIVIDYPCVECTSASIQALTSFKKL-- 323 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~----------~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~-- 323 (466)
-+.++-+++||++||.++|++-. .... .|-+. +|....-.+..++. ...++..+.||+.....
T Consensus 193 ldE~rWg~D~llkm~~~~g~~y~-qVgd--~W~~d~~~R~~~~~~~~~~~~~~~y~~~~--~~~agl~aAALA~Asrvf~ 267 (586)
T 3h7l_A 193 IEEALFGADFLVRMQNEKGFFYM-TVFD--KWSKDTAQREICAYETQLGHKFDDYQAGF--RQGGGVAIAALAAASRLGV 267 (586)
T ss_dssp HHHHHHHHHHHHHTBCTTSCBBC-EEEC--TTCCCGGGCEEEEEETTTTEEESCCBCCG--GGTHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHhcccCCCeEEE-EecC--CCCCCCCccccccccCCCCCCCcceecCC--CCcHHHHHHHHHHHhcccC
Confidence 35677789999999999998632 1111 12110 11000000111221 12345566777776654
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhc
Q 012325 324 YPGHWQEDVDHCIKRAVKFIEKIQ 347 (466)
Q Consensus 324 ~~~~~~~~i~~~i~ra~~~L~~~Q 347 (466)
++.+..++.-.+.+++.+|+.++.
T Consensus 268 d~~~~a~~~L~aA~~a~~fa~~~~ 291 (586)
T 3h7l_A 268 HGEYDQQKYRNAAENGYWHLKEHN 291 (586)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHHHHHHhcC
Confidence 455545666778889999998864
No 67
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=89.17 E-value=1.4 Score=50.04 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=73.1
Q ss_pred chhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhc-cCCCceec-cccccccccccccCcccccCCccccCCC
Q 012325 229 SDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQ-NADGGFAT-YELMRSYPWLEVLNPAETFGDIVIDYPC 306 (466)
Q Consensus 229 ~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Q-n~dGgw~~-~~~~~~~~~l~~~~~~e~fg~~~~d~~~ 306 (466)
.=|++.+++||+.++ ..+..++.++||.+.| +++|.|.. |..+.... ++ ...
T Consensus 331 ~RDaa~t~~all~~G-----------~~e~A~~~l~~L~~~Q~~~~G~~~~~y~i~G~~~----------w~-----~~Q 384 (1020)
T 1ulv_A 331 ARDMYQSVTALLAAG-----------DEEAAARGVEWLFTYQQQPDGHFPQTSRVDGTIG----------QN-----GIQ 384 (1020)
T ss_dssp HHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHTCCTTSCCCSCBCTTSCBC----------CC-----CCB
T ss_pred cchHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhcCCCCCeeeEEecCCCcC----------CC-----Ccc
Confidence 457888888887654 2456788999999999 89998853 22211110 11 124
Q ss_pred CCcHHHHHHHHHhhhhhCCCCchhhhHH-HHHHHHHHHHHhcc--cCCCccccCCCcccchHHHHHHHHHH
Q 012325 307 VECTSASIQALTSFKKLYPGHWQEDVDH-CIKRAVKFIEKIQE--LDGSWYGSWGVCFTYGTWFGVKGLVA 374 (466)
Q Consensus 307 ~~~Ta~vl~aL~~~~~~~~~~~~~~i~~-~i~ra~~~L~~~Q~--~DG~W~g~wg~~~~Y~T~~al~aL~~ 374 (466)
.|.|+..|.++..+.+. + .++-+ .|+++++|+.+... ..|-|-.+.| .++|..+.+..||.+
T Consensus 385 ~D~~g~~l~~~~~~~~~--d---~~~w~~~v~~al~~i~~~g~~~~~~~WEe~~g-~~~~t~~~~~~AL~~ 449 (1020)
T 1ulv_A 385 LDETAFPILLANQIGRT--D---AGFYRNELKPAADYLVAAGPKTPQERWEETGG-YSTSTLASQIAALAA 449 (1020)
T ss_dssp THHHHHHHHHHHHHTCC--C---HHHHHHTHHHHHHHHHHHCSCBSBCTTSSCCB-EEHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHhc--C---HHHHHHHHHHHHHHHHHhCCCCChhhhcccCC-cCHHHHHHHHHHHHH
Confidence 68899999888876432 1 33445 89999999998742 2255655544 355666666666654
No 68
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=89.16 E-value=2.7 Score=42.13 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=74.2
Q ss_pred CccchHHHHHHHHHHHhhccCC-CceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchh
Q 012325 252 EPIETKRLYDSVNVIFSLQNAD-GGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQE 330 (466)
Q Consensus 252 ~~~~~~~i~~av~~Ll~~Qn~d-Ggw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~ 330 (466)
.+...+.+.++.++|...=++. |+..++....++. ..+...|| + -..|.+|...++...+ +
T Consensus 106 ~~~~~~~~~~aA~~L~~r~~~~~g~i~sw~~~~~~~---------~~~~~iID-----~-mmni~~L~~A~~~~gd---~ 167 (377)
T 2ahf_A 106 DESARKLALDAADVLMRRWRADAGIIQAWGPKGDPE---------NGGRIIID-----C-LLNLPLLLWAGEQTGD---P 167 (377)
T ss_dssp CHHHHHHHHHHHHHHHTTEETTTTEECCBSSTTCTT---------TTTEEEGG-----G-GGGHHHHHHHHHHHCC---T
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCeEEeccCCCCCC---------CCceEEec-----h-HHHHHHHHHHHHHhCC---H
Confidence 3445678899999998877776 5555443211100 01112222 2 2336777766543221 3
Q ss_pred hhHHHHHHHHHHHHHhc-ccCCCcccc-------------C---CC----cccchHHHHHHHHHHccCCCCCc---HHHH
Q 012325 331 DVDHCIKRAVKFIEKIQ-ELDGSWYGS-------------W---GV----CFTYGTWFGVKGLVAAGMNYSNS---SSIR 386 (466)
Q Consensus 331 ~i~~~i~ra~~~L~~~Q-~~DG~W~g~-------------w---g~----~~~Y~T~~al~aL~~~g~~~~~~---~~i~ 386 (466)
++.+...++++++++.+ ++||+.+-. | |- +..-|.+|++.||...-..-.+. +..+
T Consensus 168 ~y~~~A~~~a~~~l~~~~r~dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~WaRGqAw~i~gl~~ly~~T~d~~yL~~A~ 247 (377)
T 2ahf_A 168 EYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAK 247 (377)
T ss_dssp HHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 44567788888888875 455654211 1 11 12235688888887653220122 2455
Q ss_pred HHHHHHHhccCCCCC
Q 012325 387 KACEFLLSKQRPSGG 401 (466)
Q Consensus 387 ra~~~Ll~~Q~~DGg 401 (466)
+..++++++..+||+
T Consensus 248 ~la~~~l~~~~~d~~ 262 (377)
T 2ahf_A 248 RMARHFLARVPEDGV 262 (377)
T ss_dssp HHHHHHHTTCCTTSS
T ss_pred HHHHHHHHhhHHhCC
Confidence 678899999877887
No 69
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=87.53 E-value=1.4 Score=45.74 Aligned_cols=164 Identities=16% Similarity=0.195 Sum_probs=88.5
Q ss_pred HHHHHHhcccc-CCCCCCcccccCCCCCCCCCCccC----CCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHH
Q 012325 188 AHKYIKDSQVL-EDCPGNLDFWYRHISKGAWPFSTA----DHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDS 262 (466)
Q Consensus 188 a~~wL~~~Q~~-~~~~Gdw~~~~~~~~~GGW~f~~~----~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~a 262 (466)
+.+-|+..+.. + |.. ...+.|+--.+.. +-.|-=+=|.|.+++||..++..... ..--.+.+++-
T Consensus 29 ~~~~~l~ni~~~~---g~~----~~~~~GaiIASpttsnpDYrY~W~RDaa~t~~aL~~~g~~~~~---~~~l~~~a~~y 98 (492)
T 2fba_A 29 SLYYLLQNIAYPE---GQF----NNGVPGTVIASPSTSNPDYYYQWTRDSAITFLTVLSELEDNNF---NTTLAKAVEYY 98 (492)
T ss_dssp HHHHHHHTBBCTT---SSB----TTSCTTCBCSCSCBSSSBCCSEEHHHHHHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred hHHHHHhcCCCcc---cCC----CCCCCCeEEEeCCCCCCCCeEEccchHHHHHHHHHHhCccccc---ccchHHHHHHH
Confidence 44456666554 2 321 3334566644432 11222245778888888776531000 00014556666
Q ss_pred HHH---HHhhccCCCcee----------ccccccccccccccCccccc-CCccccCCCCCcHHHHHHHHHhhhh----hC
Q 012325 263 VNV---IFSLQNADGGFA----------TYELMRSYPWLEVLNPAETF-GDIVIDYPCVECTSASIQALTSFKK----LY 324 (466)
Q Consensus 263 v~~---Ll~~Qn~dGgw~----------~~~~~~~~~~l~~~~~~e~f-g~~~~d~~~~~~Ta~vl~aL~~~~~----~~ 324 (466)
++| |....+++|+|. -|..+... | +.| ..+-.|.++.++.+|..+.. ..
T Consensus 99 ~~~~~~lq~~~~~~G~~~~~~~~glgep~y~vdG~~-----------~~~~w--~~~Q~D~~g~~~~al~~~~~~~~~~~ 165 (492)
T 2fba_A 99 INTSYNLQRTSNPSGSFDDENHKGLGEPKFNTDGSA-----------YTGAW--GRPQNDGPALRAYAISRYLNDVNSLN 165 (492)
T ss_dssp HHHHHHHHTSCBTTBCTTSGGGGGGGCCEECTTSCB-----------CCSCC--SCCBTTHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcccCCCCCcCcccccccCceeeccCCCc-----------CCccc--CCccccchhHHHHHHHHHHHHhhccc
Confidence 776 444448899886 23322111 1 111 23557889998887765421 11
Q ss_pred CC------------Cchhhh-HHHHHHHHHHHHHhcc-cC-CCccccCCCcccchHHHHHHHHHHc
Q 012325 325 PG------------HWQEDV-DHCIKRAVKFIEKIQE-LD-GSWYGSWGVCFTYGTWFGVKGLVAA 375 (466)
Q Consensus 325 ~~------------~~~~~i-~~~i~ra~~~L~~~Q~-~D-G~W~g~wg~~~~Y~T~~al~aL~~~ 375 (466)
.. .....+ .+.|++.++|+.+.-+ +| |-|-++.|. ++|..+.+..||.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~w~~pd~dlWEer~g~-~~~T~~~~~~AL~~a 230 (492)
T 2fba_A 166 EGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYWDSTGFDLWEENQGR-HFFTSLVQQKALAYA 230 (492)
T ss_dssp TTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHTTSCEECTTSCCEEC-CHHHHHHHHHHHHHH
T ss_pred cchhhhhhhccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCcCccCCC-ChHHHHHHHHHHHHH
Confidence 00 000233 4789999999998754 33 778766554 778777777777654
No 70
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=86.07 E-value=3.4 Score=44.77 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=68.7
Q ss_pred hhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccCCCceec-cccccccccccccCcccccCCccccCCCCC
Q 012325 230 DCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFAT-YELMRSYPWLEVLNPAETFGDIVIDYPCVE 308 (466)
Q Consensus 230 D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~dGgw~~-~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~ 308 (466)
=|.+.+++||+.++ ..+..++.++||.+.|+++|+|.. +..+..+ ++ .....|
T Consensus 343 RD~~~~~~al~~~G-----------~~~~a~~~l~~l~~~q~~~G~~~~~~~~~G~p----------~w-----~~~Q~D 396 (684)
T 1lf6_A 343 RDLYHVANAFIAAG-----------DVDSANRSLDYLAKVVKDNGMIPQNTWISGKP----------YW-----TGIQLD 396 (684)
T ss_dssp HHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHHHSSCCSCBCTTSCB----------CC-----CCCCHH
T ss_pred cHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhcCCCCCcccceeCCCCc----------cc-----CCcccc
Confidence 46777888887654 245678899999999999999842 1111110 01 123467
Q ss_pred cHHHHHHHHHhhhhhCCCCchhhhHHH-HHHHHHHHHHhcc--cCCCccccCCCcccchHHHHHHHHHH
Q 012325 309 CTSASIQALTSFKKLYPGHWQEDVDHC-IKRAVKFIEKIQE--LDGSWYGSWGVCFTYGTWFGVKGLVA 374 (466)
Q Consensus 309 ~Ta~vl~aL~~~~~~~~~~~~~~i~~~-i~ra~~~L~~~Q~--~DG~W~g~wg~~~~Y~T~~al~aL~~ 374 (466)
.|+..|.++..+.+.. +-+. |+++++|+.+... ..|-|..+.|. ..|..+++..||.+
T Consensus 397 ~~g~~l~~~~~~~~~g-------~~~~~v~~al~~i~~~~~~~~~g~WE~~~g~-~~~t~~~~~~aL~~ 457 (684)
T 1lf6_A 397 EQADPIILSYRLKRYD-------LYDSLVKPLADFIIKIGPKTGQERWEEIGGY-SPATMAAEVAGLTC 457 (684)
T ss_dssp HHHHHHHHHHHTTCGG-------GTTTTHHHHHHHHHHHCSSBSSCTTSSCCBB-CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcC-------chHHHHHHHHHHHHHhCCCCCcccccccCCc-CHHHHHHHHHHHHH
Confidence 8888888776543321 3356 9999999998743 23666554433 34444455555554
No 71
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=85.74 E-value=1.8 Score=46.09 Aligned_cols=143 Identities=15% Similarity=0.072 Sum_probs=75.8
Q ss_pred CCCCCCCCCCccC----CCCCCCchhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHh---hc---cCCCcee--
Q 012325 210 RHISKGAWPFSTA----DHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS---LQ---NADGGFA-- 277 (466)
Q Consensus 210 ~~~~~GGW~f~~~----~~~~pd~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~---~Q---n~dGgw~-- 277 (466)
+..+.|+--.+.. +..|-=+=|.+.+++||+..... .| ..+..++..+||.. +| ++||+|.
T Consensus 29 ~~~~tGaiIAsptts~pDYrY~W~RDaa~t~~aL~~~~~~----~G---~~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~ 101 (599)
T 2vn4_A 29 FGTSAGAVIASPSTIDPDYYYMWTRDSALVFKNLIDRFTE----TY---DAGLQRRIEQYITAQVTLQGLSNPSGSLADG 101 (599)
T ss_dssp TTSCTTCBCSCSCCSSSCCCSEEHHHHHHHHHHHHHHHHH----SB---CHHHHHHHHHHHHHHHHHHHCCBTTBCSTTS
T ss_pred CCCCCceEEEECCCCCCCCeEEchhhHHHHHHHHHHHHHh----CC---CHHHHHHHHHHHhcccceeeeeCCCCCcccc
Confidence 3444566655432 22222245788888888722100 01 24556778888874 77 8999983
Q ss_pred ------ccccccccccccccCcccccCCccccCCCCCc-----HHHHHHHHHhhhhhCCCCc---hhhhHHHHHHHHHHH
Q 012325 278 ------TYELMRSYPWLEVLNPAETFGDIVIDYPCVEC-----TSASIQALTSFKKLYPGHW---QEDVDHCIKRAVKFI 343 (466)
Q Consensus 278 ------~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~-----Ta~vl~aL~~~~~~~~~~~---~~~i~~~i~ra~~~L 343 (466)
.|..+. ..+ + +.| ..+..|. ++.++.++- +... ... ...+-+.|+++++|+
T Consensus 102 ~~l~E~~~~ldG-~~~----~-----~~w--~~~Q~D~~glr~~~~~~~~~~-~~~~--g~~~~~~~~~w~~v~~~l~~v 166 (599)
T 2vn4_A 102 SGLGEPKFELTL-KPF----T-----GNW--GRPQRDGPALRAIALIGYSKW-LINN--NYQSTVSNVIWPIVRNDLNYV 166 (599)
T ss_dssp GGGGCCEECTTS-CBC----C-----SCC--SCCCTHHHHHHHHHHHHHHHH-HHHT--TCHHHHHHHTHHHHHHHHHHH
T ss_pred cCcCceEEecCC-ccc----c-----CcC--CCeeccccchhHHHHHHHHHH-HHHh--CCcccccHHHHHHHHHHHHHH
Confidence 122111 000 0 111 1233455 444433332 1111 111 112457899999999
Q ss_pred HHhccc-C-CCccccCCCcccchHHHHHHHHHHc
Q 012325 344 EKIQEL-D-GSWYGSWGVCFTYGTWFGVKGLVAA 375 (466)
Q Consensus 344 ~~~Q~~-D-G~W~g~wg~~~~Y~T~~al~aL~~~ 375 (466)
.+..+. | |-|-++-| .++|..+.+..||.++
T Consensus 167 ~~~w~~~d~dlWEer~g-~~~~T~~~~~~aL~~a 199 (599)
T 2vn4_A 167 AQYWNQTGFDLWEEVNG-SSFFTVANQHRALVEG 199 (599)
T ss_dssp HHHTTSCEECTTSCCEE-EEHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCeeeecCC-cchHHHHHHHHHHHHH
Confidence 988654 3 77876644 4777777777777554
No 72
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=85.36 E-value=28 Score=36.96 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=56.2
Q ss_pred cchHHHHHHHHH----hcCCchhhHHHHHHHHHHHHh---ccccCCCCCCcc--------cccCCCC--CCCCCCccCCC
Q 012325 162 LWDTAFAVQAII----STNLVEEYGATLKKAHKYIKD---SQVLEDCPGNLD--------FWYRHIS--KGAWPFSTADH 224 (466)
Q Consensus 162 vwDTa~a~~AL~----~ag~~~~~~~~l~~a~~wL~~---~Q~~~~~~Gdw~--------~~~~~~~--~GGW~f~~~~~ 224 (466)
+-|.+++++||. .+|.. +..++..+||.. .|...++.|.|. ++.-+.. .|+|+
T Consensus 52 ~RDaa~t~~aL~~~~~~~G~~----~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~~ldG~~~~~~w~------ 121 (599)
T 2vn4_A 52 TRDSALVFKNLIDRFTETYDA----GLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFELTLKPFTGNWG------ 121 (599)
T ss_dssp HHHHHHHHHHHHHHHHHSBCH----HHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEECTTSCBCCSCCS------
T ss_pred hhhHHHHHHHHHHHHHhCCCH----HHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEEecCCccccCcCC------
Confidence 458999999999 77753 446778999975 675545567773 1111100 13332
Q ss_pred CCCCchh-----hHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhccC
Q 012325 225 GWPISDC-----TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNA 272 (466)
Q Consensus 225 ~~pd~D~-----Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn~ 272 (466)
.|-.|. |+..+.++........... ....-+.|+++++|+...-+.
T Consensus 122 -~~Q~D~~glr~~~~~~~~~~~~~~g~~~~~-~~~~w~~v~~~l~~v~~~w~~ 172 (599)
T 2vn4_A 122 -RPQRDGPALRAIALIGYSKWLINNNYQSTV-SNVIWPIVRNDLNYVAQYWNQ 172 (599)
T ss_dssp -CCCTHHHHHHHHHHHHHHHHHHHTTCHHHH-HHHTHHHHHHHHHHHHHHTTS
T ss_pred -CeeccccchhHHHHHHHHHHHHHhCCcccc-cHHHHHHHHHHHHHHHHhCCC
Confidence 245566 5655555442211110000 001246899999999887654
No 73
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=84.88 E-value=19 Score=36.15 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=71.7
Q ss_pred ccchHHHHHHHHHHHhhccCCCce-eccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhh
Q 012325 253 PIETKRLYDSVNVIFSLQNADGGF-ATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQED 331 (466)
Q Consensus 253 ~~~~~~i~~av~~Ll~~Qn~dGgw-~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~ 331 (466)
+...+.+.++.++|.+.=++.||+ .++....++ . +++.+.-+...|.+|..+++... .++
T Consensus 133 ~~~~~~~~~aA~~L~~r~~~~~g~iqsw~~~~~~--------~--------~~~~iID~~mni~~L~~A~~~~g---d~~ 193 (397)
T 2zzr_A 133 VKALEATIKAADKLMERYQEKGGFIQAWGELGYK--------E--------HYRLIIDCLLNIQLLFFAYEQTG---DEK 193 (397)
T ss_dssp HHHHHHHHHHHHHHHTTEETTTTEECCSSSTTCG--------G--------GCEEETTHHHHTHHHHHHHHHHC---CHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCEEEecccCCCC--------C--------CCceeechHhHHHHHHHHHHHhC---CHH
Confidence 345678899999998866777554 444311100 0 11112224456778887765422 134
Q ss_pred hHHHHHHHHHHHHHhc-ccCCCcccc----------------CCCc----ccchHHHHHHHHHHccCCCCCcH---HHHH
Q 012325 332 VDHCIKRAVKFIEKIQ-ELDGSWYGS----------------WGVC----FTYGTWFGVKGLVAAGMNYSNSS---SIRK 387 (466)
Q Consensus 332 i~~~i~ra~~~L~~~Q-~~DG~W~g~----------------wg~~----~~Y~T~~al~aL~~~g~~~~~~~---~i~r 387 (466)
+.+...++++++++.. ++||+-+-. -|-. ..-|.+|++.||...-..-.+.. ..++
T Consensus 194 y~~~A~~ha~~~l~~~~r~dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d~~yL~~A~~ 273 (397)
T 2zzr_A 194 YRQVAVNHFYASANNVVRDDSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWGIYGIPLSYRKMKDYQQIILFKG 273 (397)
T ss_dssp HHHHHHHHHHHHHHHTBCTTSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCcccCCcccccCcchhhHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 5566777788887765 444543211 1111 12267899888887522101223 3445
Q ss_pred HHHHHHhccCCCCC
Q 012325 388 ACEFLLSKQRPSGG 401 (466)
Q Consensus 388 a~~~Ll~~Q~~DGg 401 (466)
..++++++-.+||+
T Consensus 274 la~~~l~~~~~d~~ 287 (397)
T 2zzr_A 274 MTNYFLNRLPEDKV 287 (397)
T ss_dssp HHHHHHHTCCTTSC
T ss_pred HHHHHHHhhHHhCC
Confidence 67788887766676
No 74
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=83.56 E-value=3.3 Score=41.31 Aligned_cols=129 Identities=10% Similarity=0.021 Sum_probs=71.1
Q ss_pred HHHHHHHHHH-hhccC-CCcee-ccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHH
Q 012325 258 RLYDSVNVIF-SLQNA-DGGFA-TYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDH 334 (466)
Q Consensus 258 ~i~~av~~Ll-~~Qn~-dGgw~-~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~ 334 (466)
.+++++.+.. ....+ .|||. .+..+..+ +| + +.....+++.|.+++......+....++...
T Consensus 18 ~~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~-----~~----~------~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~ 82 (402)
T 1fp3_A 18 ELDRVMAFWLEHSHDREHGGFFTCLGRDGRV-----YD----D------LKYVWLQGRQVWMYCRLYRKLERFHRPELLD 82 (402)
T ss_dssp HHHHHHHHHHHHSBCTTTSSBCCCBCTTSCB-----SC----C------CEEHHHHHHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHHhhccCCCCCCCCEeeEECCCCCC-----CC----C------ccchhhhHHHHHHHHHHHHHhcccCCHHHHH
Confidence 3577888887 55554 68983 34332211 01 0 0113457777888876543210001245568
Q ss_pred HHHHHHHHHHHh-cccCC--CccccC---C-----CcccchHHHHHHHHHHc----cCCCCCcHHHHHHHHHHHhcc--C
Q 012325 335 CIKRAVKFIEKI-QELDG--SWYGSW---G-----VCFTYGTWFGVKGLVAA----GMNYSNSSSIRKACEFLLSKQ--R 397 (466)
Q Consensus 335 ~i~ra~~~L~~~-Q~~DG--~W~g~w---g-----~~~~Y~T~~al~aL~~~----g~~~~~~~~i~ra~~~Ll~~Q--~ 397 (466)
.++++++||.+. +.++| +|+-+. | .-+.|.-++++.|+... |.. ...+.+.+..+++++.- .
T Consensus 83 ~A~~~~~fl~~~~~d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~-~~~~~A~~l~~~~~~~~~d~ 161 (402)
T 1fp3_A 83 AAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEA-RYQSEAVDMMDQIVHWVRED 161 (402)
T ss_dssp HHHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccCcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHhccC
Confidence 899999999998 45554 776332 1 23567777777777643 221 12233344556666554 4
Q ss_pred CCCCC
Q 012325 398 PSGGW 402 (466)
Q Consensus 398 ~DGgW 402 (466)
+.|+|
T Consensus 162 ~~G~f 166 (402)
T 1fp3_A 162 PSGLG 166 (402)
T ss_dssp GGGGC
T ss_pred CCccc
Confidence 55665
No 75
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=80.23 E-value=4.8 Score=40.63 Aligned_cols=152 Identities=14% Similarity=0.074 Sum_probs=86.1
Q ss_pred CCcchHHHHHHHHHhcCCc--hhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCC----CCchhhH
Q 012325 160 SQLWDTAFAVQAIISTNLV--EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGW----PISDCTS 233 (466)
Q Consensus 160 s~vwDTa~a~~AL~~ag~~--~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~----pd~D~Ta 233 (466)
-.+|+++..+.+++.+... +++.+..+++++||.+. ..+. . .|||.++....+- -..++-|
T Consensus 48 k~~~~nar~i~~~a~a~~~g~~~~l~~A~~~~~fl~~~-~~D~-~-----------~GG~~~s~d~dg~~~~~k~lyd~A 114 (421)
T 2zbl_A 48 THLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGA-LRDK-K-----------YGGWYACVNDQGVVDASKQGYQHF 114 (421)
T ss_dssp EEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTTT-TBCT-T-----------TSSBCSEEETTEEEECCEEHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHh-ccCc-C-----------CCeEEEEeCCCCCcCCchhHHHHH
Confidence 4578899999999886432 34667899999999988 4431 1 2677666421121 2345678
Q ss_pred HHHHHhHhhhcccccccCCccchHHHHHHHHHHHh-hccC-CCceecc-ccccccccccccCcccccCCccccCCCCCcH
Q 012325 234 EGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNA-DGGFATY-ELMRSYPWLEVLNPAETFGDIVIDYPCVECT 310 (466)
Q Consensus 234 ~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~-~Qn~-dGgw~~~-~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~T 310 (466)
.++.|+... +. .+.+...+.+.+.++++.. +..+ +|||-.- +.+. . + ..++.....-
T Consensus 115 f~i~al~~~-~~----tg~~~~l~~a~~~~~~l~~~~~d~~~Ggf~~~~d~d~--~------~-------~~~~~~~n~~ 174 (421)
T 2zbl_A 115 FALLGAASA-VT----TGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAF--S------Q-------TEDYRGGNAN 174 (421)
T ss_dssp HHHHHHHHH-HT----TTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTS--C------S-------BCSCEEHHHH
T ss_pred HHHHHHHHH-HH----hCCccHHHHHHHHHHHHHHHhccCCCCCeeeeecCCC--C------c-------ccccCCCcHH
Confidence 888887763 21 2334445667778888875 4455 7887421 1110 0 0 0111112222
Q ss_pred HHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhc
Q 012325 311 SASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQ 347 (466)
Q Consensus 311 a~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q 347 (466)
.+.+++|..+.....+ +++....++.++++....
T Consensus 175 m~~~~al~~l~~~tgd---~~~~~~A~~~~~~~~~~~ 208 (421)
T 2zbl_A 175 MHAVEAFLIVYDVTHD---KKWLDRALRIASVIIHDV 208 (421)
T ss_dssp HHHHHHHHHHHHTTCC---THHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHh
Confidence 3456777776554322 334455667777776543
No 76
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=77.99 E-value=29 Score=35.66 Aligned_cols=224 Identities=15% Similarity=0.186 Sum_probs=109.7
Q ss_pred CcchHHHHHHHHHh----cCC----chhhHHHHHHHHHHHHhccccCCCCCCcccccCC------CCCCCCCCccCCCC-
Q 012325 161 QLWDTAFAVQAIIS----TNL----VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRH------ISKGAWPFSTADHG- 225 (466)
Q Consensus 161 ~vwDTa~a~~AL~~----ag~----~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~------~~~GGW~f~~~~~~- 225 (466)
+++.++..++++-. +|- .+.+.++++++++++...|..+...|.|...... ..-+|+|......+
T Consensus 178 ElDSla~~L~la~~Yy~~TgD~~~f~~~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~pv~~tGL 257 (489)
T 2p0v_A 178 EIDSLCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNPVKPVGL 257 (489)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCTTSSHHHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSCCCCSSC
T ss_pred hhhhhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCccCCCCc
Confidence 77889998887742 342 2356789999999999988865212444332110 01233333222111
Q ss_pred -----CCC---------chhhHHHHHHhHhhhcccccccCCcc-------chHHHHHHHHHHHhhccCCCc-eecccccc
Q 012325 226 -----WPI---------SDCTSEGLKASLLLSKLSSAIVGEPI-------ETKRLYDSVNVIFSLQNADGG-FATYELMR 283 (466)
Q Consensus 226 -----~pd---------~D~Ta~al~aL~~~~~~~~~~~g~~~-------~~~~i~~av~~Ll~~Qn~dGg-w~~~~~~~ 283 (466)
.|. +-..+.+..+|..+.+.-..+.+... -.+.|++||.--.-...+.+| --+|+.+.
T Consensus 258 i~S~fRPSDDa~~yg~~ipSN~~a~v~L~~aaeia~~v~~d~~la~~~~~lA~eI~~gI~~~gv~~~p~~G~ifAyEVDG 337 (489)
T 2p0v_A 258 IASAFRPSDDATTFQFLVPSNFFAVTSLRKAAEILNTVNRKPALAKECTALADEVEKALKKYAVCNHPKYGKIYAFEVDG 337 (489)
T ss_dssp CCCSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHSEEEETTTEEEECSEECS
T ss_pred eeCCCCCCCcchhcCcchHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCEecCCCCccEEEEEecC
Confidence 122 11233333444443322111111110 123344444221122445555 44465532
Q ss_pred ccccccccCcccccCCc--cccCCCCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccC---CCccccCC
Q 012325 284 SYPWLEVLNPAETFGDI--VIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELD---GSWYGSWG 358 (466)
Q Consensus 284 ~~~~l~~~~~~e~fg~~--~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~D---G~W~g~wg 358 (466)
||+. |=|...+. |.+|-.+|-..++ ++..++-.+++++..+|- |.-....|
T Consensus 338 -------------~G~~~~mDDanvpS-----LLslPylG~~~~d------Dpiy~nTr~~IlS~~NPyy~~G~~~~GIG 393 (489)
T 2p0v_A 338 -------------FGNQLLMDDANVPS-----LIALPYLGDVKVT------DPIYQNTRKFVWSEDNPYFFKGSAGEGIG 393 (489)
T ss_dssp -------------SSCEECCCCSSSSC-----STTHHHHTSSCTT------CHHHHHHHHHHTSTTSTTEEECSSCEEEC
T ss_pred -------------CCCcccCCCCCccH-----HHHHHHhCCCCCC------CHHHHHHHHHHHhhcCCcccccccccCCC
Confidence 4442 22221111 3445555543222 378899999999988643 22111122
Q ss_pred Cccc-chHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCCCCCCccccc
Q 012325 359 VCFT-YGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSC 409 (466)
Q Consensus 359 ~~~~-Y~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWge~~~s~ 409 (466)
+..+ ++..|-+..+..+ ....+.+.+++.++||++.....|=..|+....
T Consensus 394 spH~~~~~~Wpmsll~~a-lts~d~~E~~~~L~~l~~t~~gtGLmhEs~d~~ 444 (489)
T 2p0v_A 394 GPHIGYDMIWPMSIMMKA-FTSQNDAEIKTCIKMLMDTDAGTGFMHESFNKN 444 (489)
T ss_dssp CTTTCTTEECHHHHHHHH-HTCCCHHHHHHHHHHHHHTSTTSCSCCSEEETT
T ss_pred CCCCCCCchHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCCeeeeeECCC
Confidence 2221 2333333333332 211356788999999999888878777876543
No 77
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=75.79 E-value=71 Score=32.27 Aligned_cols=90 Identities=10% Similarity=0.133 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHhhccCCCceecc--ccccccccccccCcccc-cCCc--ccc--CCCCCcHHHHHHHHHhhhhhCCCCc
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATY--ELMRSYPWLEVLNPAET-FGDI--VID--YPCVECTSASIQALTSFKKLYPGHW 328 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~--~~~~~~~~l~~~~~~e~-fg~~--~~d--~~~~~~Ta~vl~aL~~~~~~~~~~~ 328 (466)
.+.++-+++||++||.++|++-.- +....+.+-. .|.+. ..+. .++ .|..+.|+.+..+|+..........
T Consensus 93 ldeikwg~D~llk~~~~~g~~y~qVgd~~~Dh~~w~--~Pe~~~~~R~~y~~~~~~pgs~~a~~~AAalA~as~vfk~~D 170 (433)
T 1ks8_A 93 RKAVKWATDYFIKAHTSQNEFYGQVGQGDADHAFWG--RPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVD 170 (433)
T ss_dssp HHHHHHHHHHHHHHCCBTTBEEEEESCHHHHHTCCS--CGGGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeCCCCcCCcccC--CHhhCCCCCceeeccCCCCccHHHHHHHHHHHHHHHhccccC
Confidence 467888899999999999876321 1111111111 11111 1111 122 3445566666667776544332211
Q ss_pred ---hhhhHHHHHHHHHHHHHhc
Q 012325 329 ---QEDVDHCIKRAVKFIEKIQ 347 (466)
Q Consensus 329 ---~~~i~~~i~ra~~~L~~~Q 347 (466)
..+.-...+++-+|..+++
T Consensus 171 ~~yA~~~L~~A~~~~~fa~~~~ 192 (433)
T 1ks8_A 171 GTYSNNLLTHARQLFDFANNYR 192 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 2444566777788888764
No 78
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=75.71 E-value=7.2 Score=40.24 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHhccc-C-CCccccCCCcccchHHHHHHHHHHc
Q 012325 332 VDHCIKRAVKFIEKIQEL-D-GSWYGSWGVCFTYGTWFGVKGLVAA 375 (466)
Q Consensus 332 i~~~i~ra~~~L~~~Q~~-D-G~W~g~wg~~~~Y~T~~al~aL~~~ 375 (466)
+-+.|++.++||.+.-+. | |-|-++-| .++|..+.+..||.++
T Consensus 154 ~w~~i~~~l~~v~~~w~~pd~dlWEer~g-~~~~T~~~~~~AL~~a 198 (472)
T 1gai_A 154 VWPLVRNDLSYVAQYWNQTGYDLWEEVNG-SSFFTIAVQHRALVEG 198 (472)
T ss_dssp HHHHHHHHHHHHHHHTTSCEECTTSCCEE-EEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcccCC-CCHHHHHHHHHHHHHH
Confidence 456899999999887543 3 77876644 4778777777777654
No 79
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=72.17 E-value=36 Score=33.32 Aligned_cols=165 Identities=16% Similarity=0.065 Sum_probs=91.3
Q ss_pred CcchHHHHHHHHHhcCC---chhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHH
Q 012325 161 QLWDTAFAVQAIISTNL---VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLK 237 (466)
Q Consensus 161 ~vwDTa~a~~AL~~ag~---~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~ 237 (466)
.-|=++.++-+|.++.. .+++.+.++++++++..... |.|. +. ..||-+....
T Consensus 44 ~yWW~a~~~~~l~d~~~~tgd~~y~~~a~~~~~~~~~~~~-----------------~~~~----~~---~~DD~a~~~l 99 (349)
T 3k7x_A 44 NYWWLAHLVEVRLDAYLRTKKQADLEVAEKTYLHNKNRNG-----------------GTLI----HD---FYDDMLWNAL 99 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTT-----------------SSSC----CS---BHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC-----------------CCCC----cc---CccHHHHHHH
Confidence 34446666777776422 34567888888888876411 2221 11 2588888667
Q ss_pred HhHhhhcccccccCCccchHHHHHHHHHH-HhhccC--CCceeccccccccccccccCcccccCCccccCCCCCcHHHHH
Q 012325 238 ASLLLSKLSSAIVGEPIETKRLYDSVNVI-FSLQNA--DGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASI 314 (466)
Q Consensus 238 aL~~~~~~~~~~~g~~~~~~~i~~av~~L-l~~Qn~--dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl 314 (466)
+++.+.+.. +.+..-+..++..++| .+.-++ .||+. +.... + ++..+-..+..+
T Consensus 100 a~~~aye~t----~~~~yL~~A~~l~~~l~~~~wd~~~gGGi~-W~~~~-----------~-------~~knaisN~~~~ 156 (349)
T 3k7x_A 100 AAYRLYKAT----GKSIYLEDAQLVWQDLVDTGWNDIMGGGFA-WRRPQ-----------M-------YYKNTPVNAPFI 156 (349)
T ss_dssp HHHHHHHHH----CCHHHHHHHHHHHHHHHHHTBCSGGGSCBE-EETTE-----------E-------EEEEHHHHHHHH
T ss_pred HHHHHHHHH----CCchHHHHHHHHHHHHHHhCCCCCCCCceE-ecCCC-----------c-------cccchhhHHHHH
Confidence 776654422 2222334445556677 443333 47763 32211 0 111122455566
Q ss_pred HHHHhhhhhCCCCchhhhHHHHHHHHHHHHHh-cccCCCcccc----C-C-----CcccchHHHHHHHHHHc
Q 012325 315 QALTSFKKLYPGHWQEDVDHCIKRAVKFIEKI-QELDGSWYGS----W-G-----VCFTYGTWFGVKGLVAA 375 (466)
Q Consensus 315 ~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~-Q~~DG~W~g~----w-g-----~~~~Y~T~~al~aL~~~ 375 (466)
.+++.+..... .+++.+..++..+|+.+. .+++|..+.. . | ..++|+.+++|.|+...
T Consensus 157 ~~la~l~~~tg---d~~Yl~~A~~~~~w~~~~l~d~~g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~g~~~L 225 (349)
T 3k7x_A 157 ILSCWLYNELN---ETKYLEWAMKTYEWQTKVLVREDGFVEDGINRLEDGTIDYEWKFTYNQGVYIGANLEL 225 (349)
T ss_dssp HHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHBCTTSCBCCEECTTSSSCBCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHHHHhcCCCCCCeEecCCccCCCCccCCcCeeeHHHHHHHHHHHHH
Confidence 66666544322 244567888999999875 3455554421 1 1 24788999999888765
No 80
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=70.78 E-value=23 Score=35.45 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=60.0
Q ss_pred CCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhccc-C-CCccccC---C----CcccchHHHHHHHHHHc--
Q 012325 307 VECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQEL-D-GSWYGSW---G----VCFTYGTWFGVKGLVAA-- 375 (466)
Q Consensus 307 ~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-D-G~W~g~w---g----~~~~Y~T~~al~aL~~~-- 375 (466)
+..+++.|.+|+.... .. .++....++++++||.+.... + |+|+-+. | .-+.|.-++++.||...
T Consensus 50 ~~~nar~i~~~a~a~~-~g---~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~dg~~~~~k~lyd~Af~i~al~~~~~ 125 (421)
T 2zbl_A 50 LWITARMLHVYSVAAS-MG---RPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVT 125 (421)
T ss_dssp HHHHHHHHHHHHHHHH-TT---CTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETTEEEECCEEHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH-cC---ChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCCCCcCCchhHHHHHHHHHHHHHHHH
Confidence 4467888888888764 21 234567899999999887543 3 7886322 1 13557778888888763
Q ss_pred -cCCCCCcHHHHHHHHHHHhccC-C-CCCCCCc
Q 012325 376 -GMNYSNSSSIRKACEFLLSKQR-P-SGGWGES 405 (466)
Q Consensus 376 -g~~~~~~~~i~ra~~~Ll~~Q~-~-DGgWge~ 405 (466)
|.+ ...+.+++..+++.+.-. + +||+-++
T Consensus 126 tg~~-~~l~~a~~~~~~l~~~~~d~~~Ggf~~~ 157 (421)
T 2zbl_A 126 TGHP-EARKLLDYTIEVIEKYFWSEEEQMCLES 157 (421)
T ss_dssp TTCT-THHHHHHHHHHHHHHHTEETTTTEECCE
T ss_pred hCCc-cHHHHHHHHHHHHHHHhccCCCCCeeee
Confidence 222 233456667888887543 3 6776554
No 81
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=70.73 E-value=1.3e+02 Score=33.06 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=59.3
Q ss_pred CcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhH
Q 012325 161 QLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASL 240 (466)
Q Consensus 161 ~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~ 240 (466)
...|+....+||.-.. .+..++.+..+.+.|..+ |+....+... .+.+.. +.....+|++.--+.++.
T Consensus 365 G~RD~~qd~~~~~~~~-----pe~ar~~il~~~~~Q~~d---G~v~h~~~p~--~~~g~~--~~~~~~~D~~lWl~~av~ 432 (822)
T 3rrs_A 365 GFRDSNQDLLGFVHLI-----PERARERIIDIASTQFAD---GSAYHQYQPL--TKRGNN--DIGSGFNDDPLWLIAGTA 432 (822)
T ss_dssp EHHHHHHHHHHHTTTC-----HHHHHHHHHHHHTTCCTT---SCCCSEEETT--TTEECT--TTCSCBTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcC-----HHHHHHHHHHHHHhhccc---CcccceecCc--CCCCcc--CCCCcccchHhHHHHHHH
Confidence 3589999999997543 356788888999999987 7765544311 111111 111235788887777765
Q ss_pred hhhcc--cccccCCcc-----------chHHHHHHHHHHHhhccCCC
Q 012325 241 LLSKL--SSAIVGEPI-----------ETKRLYDSVNVIFSLQNADG 274 (466)
Q Consensus 241 ~~~~~--~~~~~g~~~-----------~~~~i~~av~~Ll~~Qn~dG 274 (466)
..-+. +-.+..+.+ --+.+.++++|++....++|
T Consensus 433 ~Yi~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 479 (822)
T 3rrs_A 433 AYIKETGDFSILDEPVPFDNEPGSEVPLFEHLTRSFEFTVTHRGPHG 479 (822)
T ss_dssp HHHHHHCCGGGGGSEECSTTCTTCCEEHHHHHHHHHHHHHHSBCTTS
T ss_pred HHHHHHCCHHHHHhhhhhhccccccccHHHHHHHHHHHHHhcCCCCC
Confidence 43111 000100000 13589999999997665554
No 82
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=64.44 E-value=38 Score=37.01 Aligned_cols=32 Identities=19% Similarity=0.015 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC
Q 012325 163 WDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLE 199 (466)
Q Consensus 163 wDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~ 199 (466)
.|+...+++|. .+. .+..++.+.++.+.|..+
T Consensus 349 RD~~~~~~~l~-~~~----p~~ar~~l~~~~~~Q~~~ 380 (807)
T 1v7w_A 349 RDTAQDAISVP-HAN----PEMTRKRIVDLLRGQVKA 380 (807)
T ss_dssp HHHHHHTTSCT-TTC----HHHHHHHHHHHHHTBCTT
T ss_pred hHHhHHHHHHh-hcC----HHHHHHHHHHHHhccccC
Confidence 58888888876 443 345788899999999876
No 83
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=62.87 E-value=25 Score=37.22 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCccc
Q 012325 330 EDVDHCIKRAVKFIEKIQELDGSWYG 355 (466)
Q Consensus 330 ~~i~~~i~ra~~~L~~~Q~~DG~W~g 355 (466)
+++.+.++=+++||++.|.++|.++.
T Consensus 190 ~~lldE~rWg~D~llkm~~~~g~~y~ 215 (586)
T 3h7l_A 190 TRLIEEALFGADFLVRMQNEKGFFYM 215 (586)
T ss_dssp HHHHHHHHHHHHHHHHTBCTTSCBBC
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEE
Confidence 46778899999999999999998753
No 84
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=61.87 E-value=10 Score=27.56 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=22.9
Q ss_pred HHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCC
Q 012325 365 TWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS 399 (466)
Q Consensus 365 T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 399 (466)
.-.|..||.+.+.. +.||++||.++..+.
T Consensus 33 ~~qA~kALKat~~N------vErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 33 YECVLRAMKKKGEN------IEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHHHCSC------HHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCC------HHHHHHHHHhCCCCC
Confidence 34688899987654 789999999987664
No 85
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=60.52 E-value=2e+02 Score=31.51 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=59.3
Q ss_pred CcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHHhH
Q 012325 161 QLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASL 240 (466)
Q Consensus 161 ~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~aL~ 240 (466)
...|+....+||.-.. .+..++.+..+.+.|..+ |+....+... .+.+. .+.....+|++.--+.++.
T Consensus 358 G~RD~~qd~~~~~~~~-----p~~~r~~il~~~~~Q~~d---G~~~h~~~p~--~~~g~--~~~~~~~~D~~lW~i~av~ 425 (811)
T 3qde_A 358 GFRDSNQDLLGFVHQI-----PERARERLLDLAATQLED---GSAYHQYQPL--TKKGN--NEIGSNFNDDPLWLILATA 425 (811)
T ss_dssp EHHHHHHHHHTTTTTC-----HHHHHHHHHHHHTTBCTT---SCBCSEECTT--TCCEE--CTTCCCBTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcC-----HHHHHHHHHHHHhhcccC---CCccceecCC--CCCCC--CCCCCCcccchhHHHHHHH
Confidence 3489888888886542 356788888999999987 7766554311 11111 1111235788887777765
Q ss_pred hhhcc--cccccCCcc-----------chHHHHHHHHHHHhhccCCC
Q 012325 241 LLSKL--SSAIVGEPI-----------ETKRLYDSVNVIFSLQNADG 274 (466)
Q Consensus 241 ~~~~~--~~~~~g~~~-----------~~~~i~~av~~Ll~~Qn~dG 274 (466)
..-+. +-.+..+.+ --+.+.++++|++....++|
T Consensus 426 ~Y~~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 472 (811)
T 3qde_A 426 AYIKETGDYSILKEQVPFNNDPSKADTMFEHLTRSFYHVVNNLGPHG 472 (811)
T ss_dssp HHHHHHCCGGGGGSEEEETTEEEEEEEHHHHHHHHHHHHHTCBCTTS
T ss_pred HHHHHHCCHHHHHhhhhhhcCCcccccHHHHHHHHHHHHHhcCCCCC
Confidence 43111 101110100 13588999999997666654
No 86
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=54.88 E-value=1e+02 Score=30.13 Aligned_cols=107 Identities=9% Similarity=-0.082 Sum_probs=54.8
Q ss_pred chhhHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhh-ccCCC--ceeccccccccccccccCcccccCCccccCC
Q 012325 229 SDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSL-QNADG--GFATYELMRSYPWLEVLNPAETFGDIVIDYP 305 (466)
Q Consensus 229 ~D~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~-Qn~dG--gw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~ 305 (466)
...+|..+.++..+...-+ ..+.+...+.+.++++||... +.++| ||. +..+.... ......
T Consensus 55 l~~nar~l~~~a~a~~~~~-~~~~~~~l~~A~~~~~fl~~~~~d~~gg~g~~-~s~d~dg~-------------~~~~~~ 119 (402)
T 1fp3_A 55 VWLQGRQVWMYCRLYRKLE-RFHRPELLDAAKAGGEFLLRHARVAPPEKKCA-FVLTRDGR-------------PVKVQR 119 (402)
T ss_dssp HHHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHTBSSTTSCCBC-SEECTTSC-------------EEECCS
T ss_pred hhhhHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHhccCcCCCCceE-EEECCCCC-------------cccccc
Confidence 4456776777654432100 012333467899999999876 66665 775 22211110 000012
Q ss_pred CCCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhc--ccCCCc
Q 012325 306 CVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQ--ELDGSW 353 (466)
Q Consensus 306 ~~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q--~~DG~W 353 (466)
..+.-+.++.++..+.+...+ ++..+.+.+.++++.+.. .+.|.|
T Consensus 120 ~lyd~af~~~a~~~~~~atgd---~~~~~~A~~l~~~~~~~~~d~~~G~f 166 (402)
T 1fp3_A 120 SIFSECFYTMAMNELWRVTAE---ARYQSEAVDMMDQIVHWVREDPSGLG 166 (402)
T ss_dssp SSHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHTCGGGGC
T ss_pred chHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHhccCCCccc
Confidence 234456677777655433111 233455666677777665 355655
No 87
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=54.25 E-value=13 Score=27.51 Aligned_cols=28 Identities=29% Similarity=0.196 Sum_probs=22.1
Q ss_pred HHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCC
Q 012325 367 FGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG 400 (466)
Q Consensus 367 ~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 400 (466)
..+.||.+.+-+ +.+|++||++.+..+|
T Consensus 36 an~~AL~at~Gn------ve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 36 ANLQALIATDGD------TNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCccC
Confidence 457889987654 7899999999876654
No 88
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=52.17 E-value=1.9e+02 Score=28.69 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHhhccCCCceecc
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATY 279 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~ 279 (466)
.+.++++++|+++.+.++|.|...
T Consensus 253 ~~~i~~~l~~l~~~~~~~g~wp~~ 276 (411)
T 3e6u_A 253 HSLVKPSVDYVCQLKFPSGNYPPC 276 (411)
T ss_dssp HHTHHHHHHHHHHTCCTTSCCCSB
T ss_pred HHHHHHHHHHHHHhhccCCCCCCC
Confidence 467999999999999999988653
No 89
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=49.38 E-value=2.5e+02 Score=30.81 Aligned_cols=85 Identities=16% Similarity=0.044 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCC--------
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGH-------- 327 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~-------- 327 (466)
.+.+++.+..+.+.|.+||.....-. |..+ .|...+.+...|.+.-.+.++..+-+...+.
T Consensus 381 pe~ar~~il~~~~~Q~~dG~v~h~~~----------p~~~-~g~~~~~~~~~D~~lWl~~av~~Yi~~TGD~~~L~e~~p 449 (822)
T 3rrs_A 381 PERARERIIDIASTQFADGSAYHQYQ----------PLTK-RGNNDIGSGFNDDPLWLIAGTAAYIKETGDFSILDEPVP 449 (822)
T ss_dssp HHHHHHHHHHHHTTCCTTSCCCSEEE----------TTTT-EECTTTCSCBTTHHHHHHHHHHHHHHHHCCGGGGGSEEC
T ss_pred HHHHHHHHHHHHHhhcccCcccceec----------CcCC-CCccCCCCcccchHhHHHHHHHHHHHHHCCHHHHHhhhh
Confidence 56788889999999999999863110 0000 0111111234566666666666542211111
Q ss_pred --c----hhhhHHHHHHHHHHHHHhcccCC
Q 012325 328 --W----QEDVDHCIKRAVKFIEKIQELDG 351 (466)
Q Consensus 328 --~----~~~i~~~i~ra~~~L~~~Q~~DG 351 (466)
. ...+-+.++|+++|+.+...++|
T Consensus 450 ~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 479 (822)
T 3rrs_A 450 FDNEPGSEVPLFEHLTRSFEFTVTHRGPHG 479 (822)
T ss_dssp STTCTTCCEEHHHHHHHHHHHHHHSBCTTS
T ss_pred hhccccccccHHHHHHHHHHHHHhcCCCCC
Confidence 0 01234589999999998665555
No 90
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=48.80 E-value=1.2e+02 Score=30.20 Aligned_cols=67 Identities=13% Similarity=0.013 Sum_probs=43.6
Q ss_pred CCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCccccC------CCcccchHHHHHHHHHHcc
Q 012325 307 VECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW------GVCFTYGTWFGVKGLVAAG 376 (466)
Q Consensus 307 ~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~g~w------g~~~~Y~T~~al~aL~~~g 376 (466)
.-+++-++.+|..+... ...+++.+.|+++++|+.+.+.++|.|+..- -+.+-+|+.=.+.+|..+.
T Consensus 230 aHG~aGI~~~Ll~~~~~---~~~~~~~~~i~~~l~~l~~~~~~~g~wp~~~~~~~~~~~~wChG~~Gi~~~l~~~~ 302 (411)
T 3e6u_A 230 AHGLAGIYYYLMQPSLQ---VSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAY 302 (411)
T ss_dssp TTSHHHHHHHHTCGGGC---CCHHHHHHTHHHHHHHHHHTCCTTSCCCSBTTCCCCCCCSSSSSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhh---cChHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccCccccccCCcHHHHHHHHHHH
Confidence 44666667777666432 2235567789999999999999999887521 1235567655555555543
No 91
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=47.65 E-value=2.4e+02 Score=28.68 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=54.0
Q ss_pred cchHHHHHHHHH---hcCCchhhHHHHHHHHHHHHh---ccccCCCCCCcc------cccC-CC--CCCCCCCccCCCCC
Q 012325 162 LWDTAFAVQAII---STNLVEEYGATLKKAHKYIKD---SQVLEDCPGNLD------FWYR-HI--SKGAWPFSTADHGW 226 (466)
Q Consensus 162 vwDTa~a~~AL~---~ag~~~~~~~~l~~a~~wL~~---~Q~~~~~~Gdw~------~~~~-~~--~~GGW~f~~~~~~~ 226 (466)
+-|.++++.||. .+|..++ .++..+||.. .|...++.|.|. .+|. +. ..++|+ .
T Consensus 53 ~RDaa~t~~aL~~~~~~G~~~~----a~~~~~~l~~~~~lQ~~~~~~G~l~~~glgE~~y~vdG~~~~~~w~-------~ 121 (472)
T 1gai_A 53 TRDSGLVIKTLVDLFRNGDTDL----LSTIEHYISSQAIIQGVSNPSGDLSSGGLGEPKFNVDETAYTGSWG-------R 121 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGG----HHHHHHHHHHHHHHHHCCBTTBCTTTTGGGCCEECTTSCBCCSCCS-------C
T ss_pred hhhHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHhhcccCCCCccccCCCCCceEccCCCccCCcCC-------C
Confidence 458999999999 7887543 4566777766 453233557776 4442 11 123443 2
Q ss_pred CCchh-----hHHHHHHhHhhhcccccccCCccchHHHHHHHHHHHhhcc
Q 012325 227 PISDC-----TSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQN 271 (466)
Q Consensus 227 pd~D~-----Ta~al~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~~Qn 271 (466)
|-.|. ++..+.++........... ....-+.+++.++||...=+
T Consensus 122 ~Q~D~~g~ra~~~~~~~~~l~~~g~~~~~-~~~~w~~i~~~l~~v~~~w~ 170 (472)
T 1gai_A 122 PQRDGPALRATAMIGFGQWLLDNGYTSAA-TEIVWPLVRNDLSYVAQYWN 170 (472)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHTTCHHHH-HHTHHHHHHHHHHHHHHHTT
T ss_pred ccccccchhHHHHHHHHHHHHHcCCcccc-chhHHHHHHHHHHHHHHhcC
Confidence 55677 5656655542111110000 00123568999999977533
No 92
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.92 E-value=22 Score=25.76 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=20.6
Q ss_pred HHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccC
Q 012325 312 ASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELD 350 (466)
Q Consensus 312 ~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~D 350 (466)
.+..||...+. -|+||++||.++..|.
T Consensus 35 qA~kALKat~~------------NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 35 CVLRAMKKKGE------------NIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHCS------------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHcCC------------CHHHHHHHHHhCCCCC
Confidence 56677777643 3999999999998664
No 93
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=45.77 E-value=1.4e+02 Score=30.91 Aligned_cols=89 Identities=11% Similarity=0.184 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHhhccCC-Cceeccccccccccccc-cCcccc-cCCccccCCCCCcHHHHHHHHHhhhhhCCCCc---h
Q 012325 256 TKRLYDSVNVIFSLQNAD-GGFATYELMRSYPWLEV-LNPAET-FGDIVIDYPCVECTSASIQALTSFKKLYPGHW---Q 329 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~d-Ggw~~~~~~~~~~~l~~-~~~~e~-fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~---~ 329 (466)
.+.++-+++||++||.++ |++ |..-.+..|-.. ..|.+. -.+. +...+...|+....+|+.......++. .
T Consensus 191 ldeikwg~D~llk~~~~~~g~~--y~~v~~~~w~g~~~~Pe~~~~~R~-~~~~~t~~~~~~AAalA~as~vf~~~D~~yA 267 (537)
T 3gzk_A 191 LEVAREEIAWLLTMQDPATGGV--YHKVTTPSFPPLDTRPEDDDAPLV-LSPISYAATATFCAAMAHAALVYRPFDPALS 267 (537)
T ss_dssp HHHHHHHHHHHHHTBCTTTCCB--BSEEECSSCCCTTCCGGGCCSCEE-ECCBCHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCeE--EEEecCCCcCCCCcCcccCCCcce-EeecCCcHHHHHHHHHHHHHHhhcccCHHHH
Confidence 467888999999999854 655 221112223111 112111 1111 111122345556666666544332221 1
Q ss_pred hhhHHHHHHHHHHHHHhc
Q 012325 330 EDVDHCIKRAVKFIEKIQ 347 (466)
Q Consensus 330 ~~i~~~i~ra~~~L~~~Q 347 (466)
++.-.+.+++.+|+.++.
T Consensus 268 ~~~L~~A~~~~~fa~~~~ 285 (537)
T 3gzk_A 268 SCCADAARRAYAWLGAHE 285 (537)
T ss_dssp HHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 445567778888888764
No 94
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=45.20 E-value=18 Score=26.73 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCC
Q 012325 311 SASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDG 351 (466)
Q Consensus 311 a~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG 351 (466)
-.++.||...+. -|.+||+||.+.+..+|
T Consensus 35 ~an~~AL~at~G------------nve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 35 NANLQALIATDG------------DTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHHTTS------------CHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHcCC------------CHHHHHHHHHhCCCccC
Confidence 356888888753 38899999999987665
No 95
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=44.65 E-value=33 Score=33.61 Aligned_cols=162 Identities=10% Similarity=-0.007 Sum_probs=83.7
Q ss_pred CcchHHHHHHHHHhcC---CchhhHHHHHHHHHHH-HhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHH
Q 012325 161 QLWDTAFAVQAIISTN---LVEEYGATLKKAHKYI-KDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGL 236 (466)
Q Consensus 161 ~vwDTa~a~~AL~~ag---~~~~~~~~l~~a~~wL-~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al 236 (466)
...|-++.++|+.++- -.+++.+..++..++| ...-. +. ..||..+......+..+=..+..+
T Consensus 90 ~~DD~a~~~la~~~aye~t~~~~yL~~A~~l~~~l~~~~wd-~~------------~gGGi~W~~~~~~~knaisN~~~~ 156 (349)
T 3k7x_A 90 FYDDMLWNALAAYRLYKATGKSIYLEDAQLVWQDLVDTGWN-DI------------MGGGFAWRRPQMYYKNTPVNAPFI 156 (349)
T ss_dssp BHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBC-SG------------GGSCBEEETTEEEEEEHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhCCC-CC------------CCCceEecCCCccccchhhHHHHH
Confidence 3578998777777641 1233445555666676 33321 11 126654433211122222555666
Q ss_pred HHhHhhhcccccccCCccchHHHHHHHHHHHh-hccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHH
Q 012325 237 KASLLLSKLSSAIVGEPIETKRLYDSVNVIFS-LQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQ 315 (466)
Q Consensus 237 ~aL~~~~~~~~~~~g~~~~~~~i~~av~~Ll~-~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~ 315 (466)
.++..+.+. .|.+...+..++..+|+.+ +.+++|.+ |+..... .+ |.........+..+.+|.
T Consensus 157 ~~la~l~~~----tgd~~Yl~~A~~~~~w~~~~l~d~~g~v--~Dg~~~~-----~~-----g~~~~~~~~tYnqg~~l~ 220 (349)
T 3k7x_A 157 ILSCWLYNE----LNETKYLEWAMKTYEWQTKVLVREDGFV--EDGINRL-----ED-----GTIDYEWKFTYNQGVYIG 220 (349)
T ss_dssp HHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHBCTTSCB--CCEECTT-----SS-----SCBCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHH----hCCHHHHHHHHHHHHHHHhcCCCCCCeE--ecCCccC-----CC-----CccCCcCeeeHHHHHHHH
Confidence 666555432 2334456777888899865 45666554 4432100 00 000001134567888999
Q ss_pred HHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcccCCCcc
Q 012325 316 ALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWY 354 (466)
Q Consensus 316 aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~DG~W~ 354 (466)
++..+-+...+ ++..+.+++-++++.+..-++|-.+
T Consensus 221 g~~~LY~~T~d---~~yl~~a~~l~~~~~~~f~~~gi~~ 256 (349)
T 3k7x_A 221 ANLELYRITKE---AIYLDTANKTAAISLKELTEDGIFK 256 (349)
T ss_dssp HHHHHHHHHCC---HHHHHHHHHHHHHHHHHHEETTEEC
T ss_pred HHHHHHHhhCc---HHHHHHHHHHHHHHHHHhccCCccc
Confidence 98887544221 3334556666666666655676544
No 96
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=44.09 E-value=3.1e+02 Score=28.86 Aligned_cols=21 Identities=5% Similarity=-0.053 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHhhccCCCce
Q 012325 256 TKRLYDSVNVIFSLQNADGGF 276 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw 276 (466)
.+.++-+++||++||..+|.+
T Consensus 94 ldeikwg~Dyllk~~~~~~~~ 114 (605)
T 1tf4_A 94 KDNLRWVNDYFIKAHPSPNVL 114 (605)
T ss_dssp HHHHHHHHHHHHHTCSBTTBE
T ss_pred HHHHHHHHHHHHHhccCCCeE
Confidence 467888999999999877644
No 97
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.34 E-value=27 Score=25.40 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhccCCccCCCC
Q 012325 428 AWAMLALIDAGQVRINCCCSTLKVTLSLEREFSINSC 464 (466)
Q Consensus 428 A~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~~~~~~~ 464 (466)
.-|..||.+.+. ..++++++||++.+.+.+|+.+
T Consensus 24 ~~a~~AL~~t~n---~~~e~A~~wL~~h~~d~d~d~p 57 (64)
T 2crn_A 24 HTALKALAATGR---KTAEEALAWLHDHCNDPSLDDP 57 (64)
T ss_dssp HHHHHHHHHHTS---CCHHHHHHHHHHHSSSTTSCCS
T ss_pred HHHHHHHHHhCC---CCHHHHHHHHHhCCCCccccCC
Confidence 567777777754 2489999999999999998764
No 98
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.36 E-value=30 Score=25.14 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=20.4
Q ss_pred HHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCC
Q 012325 366 WFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS 399 (466)
Q Consensus 366 ~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 399 (466)
..|..||.+.+-. .+++|++||++++.+.
T Consensus 34 ~~a~~AL~~t~~~-----nve~A~ewL~~~~~d~ 62 (64)
T 2cpw_A 34 ARAQKALASTGGR-----SVQTACDWLFSHSGPS 62 (64)
T ss_dssp HHHHHHHHHTTTS-----CHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHcCCC-----CHHHHHHHHHhCCCCC
Confidence 3466777776531 3789999999987653
No 99
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.69 E-value=31 Score=25.94 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=21.8
Q ss_pred HHHHHHHHccCCCCCcHHHHHHHHHHHhccCCCC
Q 012325 367 FGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSG 400 (466)
Q Consensus 367 ~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 400 (466)
.++.||.+.+-+ +.+|++||++.+-++-
T Consensus 46 ~~~~AL~~t~Gn------ve~Ave~L~~~~~~~s 73 (74)
T 1vej_A 46 ANLQALVATDGD------IHAAIEMLLGASGPSS 73 (74)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHhCCC------HHHHHHHHHhCCCCCC
Confidence 568889887654 6899999999876653
No 100
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=38.80 E-value=1.8e+02 Score=30.86 Aligned_cols=89 Identities=12% Similarity=0.139 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHhhccCC--CceeccccccccccccccCcccc-cCCccccCCCCCcHHHHHHHHHhhhhhCCCCc---h
Q 012325 256 TKRLYDSVNVIFSLQNAD--GGFATYELMRSYPWLEVLNPAET-FGDIVIDYPCVECTSASIQALTSFKKLYPGHW---Q 329 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~d--Ggw~~~~~~~~~~~l~~~~~~e~-fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~---~ 329 (466)
.+.++-+++||++||.++ |++- ... .+..|-....|.+. -.+..+. +..+.|+.+..+|+.....+.... .
T Consensus 235 ldeikwg~Dyllk~q~~~~~g~~y-~~v-gd~~~~~~~~Pe~~~~~R~~~~-~~s~~a~e~AAAlAaAS~vfk~~D~~yA 311 (639)
T 1clc_A 235 LDELKYEIDWILTMQYPDGSGRVA-HKV-STRNFGGFIMPENEHDERFFVP-WSSAATADFVAMTAMAARIFRPYDPQYA 311 (639)
T ss_dssp HHHHHHHHHHHHTTBCTTSSCCBE-EEE-ECSSCCCSCCGGGCCSCCEEEE-ECHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCeEE-EEe-cCCCCCCCCCchhcCCCceEec-CCcHHHHHHHHHHHHHHHhccccCHHHH
Confidence 467888999999999976 5542 111 11111111122221 1112222 234556666666666543322211 2
Q ss_pred hhhHHHHHHHHHHHHHhc
Q 012325 330 EDVDHCIKRAVKFIEKIQ 347 (466)
Q Consensus 330 ~~i~~~i~ra~~~L~~~Q 347 (466)
.+.-.+.+++-+|..++.
T Consensus 312 ~~~L~~Ak~l~~fA~~~~ 329 (639)
T 1clc_A 312 EKCINAAKVSYEFLKNNP 329 (639)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 445567778888888765
No 101
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=38.10 E-value=3.2e+02 Score=27.33 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=19.2
Q ss_pred cCCchhhHHHHHHHHHHHHhccccC
Q 012325 175 TNLVEEYGATLKKAHKYIKDSQVLE 199 (466)
Q Consensus 175 ag~~~~~~~~l~~a~~wL~~~Q~~~ 199 (466)
.|..+++.+.++=+.+||+++|..+
T Consensus 86 ~~~~~d~ldeikwg~D~llk~~~~~ 110 (433)
T 1ks8_A 86 AGALDDGRKAVKWATDYFIKAHTSQ 110 (433)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCBT
T ss_pred CCchHHHHHHHHHHHHHHHHhccCC
Confidence 3444556777888999999999865
No 102
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=37.40 E-value=2.9e+02 Score=30.12 Aligned_cols=85 Identities=13% Similarity=0.002 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHhhccCCCceeccccccccccccccCcccccCCccccCCCCCcHHHHHHHHHhhhhhCCCCc--h----
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHW--Q---- 329 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~fg~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~--~---- 329 (466)
.+.+++.+..+.+.|.+||.....-. |..+ .|...+.+...|.+.-.+.++..+-+...+.. .
T Consensus 374 p~~~r~~il~~~~~Q~~dG~~~h~~~----------p~~~-~g~~~~~~~~~D~~lW~i~av~~Y~~~TGD~~~L~e~~p 442 (811)
T 3qde_A 374 PERARERLLDLAATQLEDGSAYHQYQ----------PLTK-KGNNEIGSNFNDDPLWLILATAAYIKETGDYSILKEQVP 442 (811)
T ss_dssp HHHHHHHHHHHHTTBCTTSCBCSEEC----------TTTC-CEECTTCCCBTTHHHHHHHHHHHHHHHHCCGGGGGSEEE
T ss_pred HHHHHHHHHHHHhhcccCCCccceec----------CCCC-CCCCCCCCCcccchhHHHHHHHHHHHHHCCHHHHHhhhh
Confidence 56788889999999999998853110 0000 01111112346666666666665422111110 0
Q ss_pred --------hhhHHHHHHHHHHHHHhcccCC
Q 012325 330 --------EDVDHCIKRAVKFIEKIQELDG 351 (466)
Q Consensus 330 --------~~i~~~i~ra~~~L~~~Q~~DG 351 (466)
..+=+.++|+++|+.+...++|
T Consensus 443 ~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 472 (811)
T 3qde_A 443 FNNDPSKADTMFEHLTRSFYHVVNNLGPHG 472 (811)
T ss_dssp ETTEEEEEEEHHHHHHHHHHHHHTCBCTTS
T ss_pred hhcCCcccccHHHHHHHHHHHHHhcCCCCC
Confidence 1233589999999997665555
No 103
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=33.10 E-value=39 Score=23.44 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=30.7
Q ss_pred cHHHHHHHHhhhcceeeeCCCceeecCCCCCcchHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc
Q 012325 131 SEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQ 196 (466)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~G~~~q~~~~s~vwDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q 196 (466)
...+...++.|.+. | + -|...++.||..++-. +++|++||.+.+
T Consensus 8 e~~~~~~l~~L~~M------G-----F-----~~~~~~~~AL~~t~gn------ve~Ave~L~~~~ 51 (53)
T 2knz_A 8 EVRFQQQLEQLNSM------G-----F-----INREANLQALIATGGD------INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHHTT------T-----C-----CCHHHHHHHHHHHTSC------HHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHc------C-----C-----CCHHHHHHHHHHhCCC------HHHHHHHHHHcC
Confidence 34466667777664 2 1 1567888999988642 789999999875
No 104
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.91 E-value=51 Score=24.66 Aligned_cols=30 Identities=30% Similarity=0.257 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCC
Q 012325 364 GTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS 399 (466)
Q Consensus 364 ~T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 399 (466)
..-.|+.||...+-. +++|++||++.|.++
T Consensus 42 ~r~~a~~AL~~~~~n------ve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 42 DRTQVEVALAAADDD------LTVAVEILMSQSGPS 71 (73)
T ss_dssp CHHHHHHHHHHHTSC------HHHHHHHHHTCSCSS
T ss_pred CHHHHHHHHHHhCCC------HHHHHHHHHHCCCCC
Confidence 345688899987643 689999999987665
No 105
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.35 E-value=55 Score=24.40 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=21.9
Q ss_pred HHHHHHHHHHccCCCCCcHHHHHHHHHHHhccCCC
Q 012325 365 TWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS 399 (466)
Q Consensus 365 T~~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 399 (466)
.-.|..||.+.+- .+.+|++||++++.+.
T Consensus 43 ~~~a~~AL~~t~~------nve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 43 EDVARKALKASGG------DIEKATDWVFNNSGPS 71 (73)
T ss_dssp HHHHHHHHHHTTS------CHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHhCC------CHHHHHHHHHhCCCCC
Confidence 4567888888753 3789999999987643
No 106
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.46 E-value=52 Score=23.79 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC
Q 012325 164 DTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLE 199 (466)
Q Consensus 164 DTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~ 199 (466)
+...|+.||..++-. +++|++||+..+...
T Consensus 22 ~~~~a~~AL~~~~~n------ve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 22 SKEASRQALMDNGNN------LEAALNVLLTSNKQK 51 (63)
T ss_dssp CHHHHHHHHHHTTSC------HHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHHhCCC------HHHHHHHHHHCCCCc
Confidence 456678888887642 789999999987654
No 107
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=31.32 E-value=1.7e+02 Score=31.71 Aligned_cols=21 Identities=10% Similarity=-0.121 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHhhccCCCce
Q 012325 256 TKRLYDSVNVIFSLQNADGGF 276 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw 276 (466)
.+..++.+.++.+.|.+||+.
T Consensus 363 p~~ar~~l~~~~~~Q~~~G~~ 383 (807)
T 1v7w_A 363 PEMTRKRIVDLLRGQVKAGYG 383 (807)
T ss_dssp HHHHHHHHHHHHHTBCTTSCB
T ss_pred HHHHHHHHHHHHhccccCCCc
Confidence 566788899999999999973
No 108
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=30.69 E-value=4.4e+02 Score=26.67 Aligned_cols=90 Identities=9% Similarity=0.097 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHhhccCCCceecc--cccccccccc---ccCcccccCCcccc--CCCCCcHHHHHHHHHhhhhhCCCCc
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATY--ELMRSYPWLE---VLNPAETFGDIVID--YPCVECTSASIQALTSFKKLYPGHW 328 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~--~~~~~~~~l~---~~~~~e~fg~~~~d--~~~~~~Ta~vl~aL~~~~~~~~~~~ 328 (466)
.+.++-+++||++|+..+|++-.- +.+.++.+.. .++..+ ....++ .|..+.|+.+..+|+.....+....
T Consensus 115 ldeikwg~D~llk~~~~~~~~y~qVgd~~~Dh~~W~~pe~~~~~R--~~y~i~~~~pgsd~a~e~AAAlAaAS~vfk~~D 192 (466)
T 2xfg_A 115 LNNIKWACDYFIKCHPEKDVYYYQVGDGHADHAWWGPAEVMPMER--PSYKVDRSSPGSTVVAETSAALAIASIIFKKVD 192 (466)
T ss_dssp HHHHHHHHHHHHHTCSBTTEEEEEESCHHHHHTCCSCGGGCCSCC--CEEEEESSSCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeCCCCccccccCCcccCCCCC--ceeEecCCCCccHHHHHHHHHHHHHHHhccccC
Confidence 467888999999998777765321 1111111111 111000 001222 2345556666666766554432221
Q ss_pred ---hhhhHHHHHHHHHHHHHhc
Q 012325 329 ---QEDVDHCIKRAVKFIEKIQ 347 (466)
Q Consensus 329 ---~~~i~~~i~ra~~~L~~~Q 347 (466)
..+.-...+++-+|..+..
T Consensus 193 ~~yA~~~L~~Ak~l~~fA~~~~ 214 (466)
T 2xfg_A 193 GEYSKECLKHAKELFEFADTTK 214 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 2444566778888888875
No 109
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.39 E-value=50 Score=23.07 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=18.8
Q ss_pred HHHHHHHHccCCCCCcHHHHHHHHHHHhccC
Q 012325 367 FGVKGLVAAGMNYSNSSSIRKACEFLLSKQR 397 (466)
Q Consensus 367 ~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~ 397 (466)
.++.||.+.+-+ +.+|++||++...
T Consensus 26 ~n~~AL~~~~Gd------v~~Ave~L~~~~~ 50 (54)
T 2dah_A 26 ANLQALIATGGD------VDAAVEKLRQSSG 50 (54)
T ss_dssp HHHHHHHHHTSC------HHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCC
Confidence 457788877654 7899999998653
No 110
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=29.41 E-value=56 Score=35.47 Aligned_cols=68 Identities=16% Similarity=0.311 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHh---c-ccCCCccccCCCc-ccchHHHH---HHHHHH-ccCCCCCcHHHHHHHHHHHhccCCCCC
Q 012325 332 VDHCIKRAVKFIEKI---Q-ELDGSWYGSWGVC-FTYGTWFG---VKGLVA-AGMNYSNSSSIRKACEFLLSKQRPSGG 401 (466)
Q Consensus 332 i~~~i~ra~~~L~~~---Q-~~DG~W~g~wg~~-~~Y~T~~a---l~aL~~-~g~~~~~~~~i~ra~~~Ll~~Q~~DGg 401 (466)
....++++++.|... . .+||+|.+ |.. +.|++... +.+|.. .|.+....+.+++...|++....+||-
T Consensus 334 a~~wl~~a~~~l~~~l~~~~~~DG~~~E--G~~Y~~~~~~~~~~~~~~l~~~~g~d~~~~p~l~~~~~~~~~~~~p~g~ 410 (776)
T 3a0o_A 334 AGEWLDYTVEFLATLYSPWAGTDGGWAE--GPHYWMTGMAYLIEAANLIRSYIGYDLYQRPFFQNTGRFPLYTKAPGTR 410 (776)
T ss_dssp HHHHHHHHHHHHHHTCCTTBCTTSCBTT--CHHHHHHHHHHHHHHHHHHHHHHCCCGGGSHHHHHTTHHHHHHSCTTCS
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCCcc--chhHHHHHHHHHHHHHHHHHHhhCcchhhCHhHHHHHHHHHHeeCCCCc
Confidence 346778887776543 3 68999987 333 24454332 334432 354433578999999999999988863
No 111
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.06 E-value=49 Score=23.26 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcccc
Q 012325 164 DTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVL 198 (466)
Q Consensus 164 DTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~ 198 (466)
|-..|..||..+|-. -|+.|++||.+.-.+
T Consensus 22 d~erae~Alk~Tg~~-----Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 22 DQEMAGRALKQTGSR-----SIEAALEYISKMSGP 51 (54)
T ss_dssp CHHHHHHHHHHHTSC-----CHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHhCcc-----cHHHHHHHHHHhcCC
Confidence 456788888887743 388999999988443
No 112
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=28.52 E-value=52 Score=24.64 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=23.8
Q ss_pred chHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC
Q 012325 163 WDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLE 199 (466)
Q Consensus 163 wDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~~~ 199 (466)
++...++.||..++-. +++|++||++.|...
T Consensus 41 F~r~~a~~AL~~~~~n------ve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 41 FDRTQVEVALAAADDD------LTVAVEILMSQSGPS 71 (73)
T ss_dssp CCHHHHHHHHHHHTSC------HHHHHHHHHTCSCSS
T ss_pred CCHHHHHHHHHHhCCC------HHHHHHHHHHCCCCC
Confidence 3577788899887642 788999999987653
No 113
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=28.46 E-value=63 Score=24.79 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhccCCccCCCC
Q 012325 428 AWAMLALIDAGQVRINCCCSTLKVTLSLEREFSINSC 464 (466)
Q Consensus 428 A~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~~~~~~~ 464 (466)
.-|..||...+. ..++++++||++...+.+|+.+
T Consensus 44 ~~a~~AL~~t~n---~n~e~A~ewL~~h~~d~d~d~p 77 (84)
T 1vek_A 44 LHCQKAAINTSN---AGVEEAMNWLLSHMDDPDIDAP 77 (84)
T ss_dssp HHHHHHHHHTTT---CCHHHHHHHHHHHTTCSTTTSC
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHhCCCccccccC
Confidence 344555555532 1388999999999999988754
No 114
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.40 E-value=58 Score=23.51 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHhccCCccCC
Q 012325 427 TAWAMLALIDAGQVRINCCCSTLKVTLSLEREFSIN 462 (466)
Q Consensus 427 TA~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~~~~~ 462 (466)
...|..||.+.+.. .++++++||++.+.+.+++
T Consensus 23 ~~~a~~AL~~t~~~---nve~A~ewLl~~~~d~d~d 55 (64)
T 1whc_A 23 RGRAEKALALTGNQ---GIEAAMDWLMEHEDDPDVD 55 (64)
T ss_dssp HHHHHHHHHHHTSC---CHHHHHHHHHHHTTCSCTT
T ss_pred HHHHHHHHHHhcCC---CHHHHHHHHHhCCCCcccc
Confidence 35677788877432 3899999999999888775
No 115
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=27.80 E-value=1.4e+02 Score=31.68 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHhccccC
Q 012325 179 EEYGATLKKAHKYIKDSQVLE 199 (466)
Q Consensus 179 ~~~~~~l~~a~~wL~~~Q~~~ 199 (466)
+++.+.++=+.+||+++|.++
T Consensus 232 ~d~ldeikwg~Dyllk~q~~~ 252 (639)
T 1clc_A 232 PDFLDELKYEIDWILTMQYPD 252 (639)
T ss_dssp CHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 345677888899999999864
No 116
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.84 E-value=58 Score=25.04 Aligned_cols=29 Identities=17% Similarity=0.064 Sum_probs=22.4
Q ss_pred chHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc
Q 012325 163 WDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQV 197 (466)
Q Consensus 163 wDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~Q~ 197 (466)
+|...|..||..++-. +++|++||.+.|-
T Consensus 41 F~~~~A~~AL~~t~gd------ve~A~e~L~sh~~ 69 (83)
T 1veg_A 41 FDTVVAEAALRVFGGN------VQLAAQTLAHHGG 69 (83)
T ss_dssp CCHHHHHHHHHHTTTC------HHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHcCCC------HHHHHHHHHhCCC
Confidence 3567788888877632 7899999999876
No 117
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=26.03 E-value=5.1e+02 Score=25.91 Aligned_cols=129 Identities=18% Similarity=0.111 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhhccCCCceecc--ccccccccccccCcccc-cCC---ccccC--CCCCcHHHHHHHHHhhhhhCCCC
Q 012325 256 TKRLYDSVNVIFSLQNADGGFATY--ELMRSYPWLEVLNPAET-FGD---IVIDY--PCVECTSASIQALTSFKKLYPGH 327 (466)
Q Consensus 256 ~~~i~~av~~Ll~~Qn~dGgw~~~--~~~~~~~~l~~~~~~e~-fg~---~~~d~--~~~~~Ta~vl~aL~~~~~~~~~~ 327 (466)
.+.++-+++||++|+..+|++-.- +...++.+-. +|.+. ..+ ..++. |..+.|+.+..+|+.........
T Consensus 95 ldeikwg~D~llk~~~~~~~~y~qVgd~~~Dh~~w~--~Pe~~~~~R~~~y~~~~~~p~sd~a~~~AAalAaas~vfk~~ 172 (441)
T 1ia6_A 95 LQQLKYFTDYFLKSHPNSTTFYYQVGEGNADHTYWG--APEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNI 172 (441)
T ss_dssp HHHHHHHHHHHHHTCCSTTCEEEEESCHHHHTTCCS--CGGGCCSCCCCCEEEBTTBCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeCCCCccccccC--ChhhCCCCCceeeEeCCCCCccHHHHHHHHHHHHHHHhcccc
Confidence 467888999999998877766321 1111111111 11110 001 22222 33455556666666654332211
Q ss_pred c---hhhhHHHHHHHHHHHHHhcccC--CCccccCCCcccch-HHHHHHHHHHccCCCCCcHHHHHHHHHH
Q 012325 328 W---QEDVDHCIKRAVKFIEKIQELD--GSWYGSWGVCFTYG-TWFGVKGLVAAGMNYSNSSSIRKACEFL 392 (466)
Q Consensus 328 ~---~~~i~~~i~ra~~~L~~~Q~~D--G~W~g~wg~~~~Y~-T~~al~aL~~~g~~~~~~~~i~ra~~~L 392 (466)
. ..+.-...+++-+|..+..... ++++++- .+.-. .|.|+.-..+.|. ......+.+++
T Consensus 173 D~~yA~~~L~~A~~~~~fa~~~~g~~~~~~~Y~ss--~~~DE~~WAAa~Ly~aTgd----~~Yl~~a~~~~ 237 (441)
T 1ia6_A 173 DSAYATKCLNAAKELYAMGKANQGVGNGQSFYQAT--SFGDDLAWAATWLYTATND----STYITDAEQFI 237 (441)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCSCCCCTTTSCCC--CSHHHHHHHHHHHHHHHCC----THHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC--CchhHHHHHHHHHHHHhCC----HHHHHHHHHHH
Confidence 1 2445566778888888765321 2333321 11111 2333333444443 35556666654
No 118
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.30 E-value=71 Score=21.31 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 012325 165 TAFAVQAIISTNLVEEYGATLKKAHKYIKDS 195 (466)
Q Consensus 165 Ta~a~~AL~~ag~~~~~~~~l~~a~~wL~~~ 195 (466)
...+..||..+| . +++|++||.+.
T Consensus 23 ~~~a~~AL~~~~--n-----~e~A~~~L~~h 46 (47)
T 2ekk_A 23 REHAMEALLNTS--T-----MEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHHSC--S-----HHHHHHHHHTC
T ss_pred HHHHHHHHHHcC--C-----HHHHHHHHHcC
Confidence 456777888775 1 78899999864
No 119
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=24.26 E-value=4.9e+02 Score=25.15 Aligned_cols=47 Identities=11% Similarity=-0.029 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHhhhhhCCCCchhhhHHHHHHHHHHHHHhcc--cCCC-ccc
Q 012325 307 VECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQE--LDGS-WYG 355 (466)
Q Consensus 307 ~~~Ta~vl~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~--~DG~-W~g 355 (466)
..+.+-++..|..+..... ..+...+.++++++|+.+.+. ++|. |+.
T Consensus 205 aHG~aGi~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~g~~wp~ 254 (409)
T 2g0d_A 205 AHGLAGVGCILAYAHIKGY--SNEASLSALQKIIFIYEKFELERKKQFLWKD 254 (409)
T ss_dssp TTSHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHHCCCGGGTTCCCS
T ss_pred hhhHHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHHHHHHhcCCCCCcCCC
Confidence 3455555556655543211 124456789999999977654 6677 644
No 120
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.46 E-value=81 Score=24.13 Aligned_cols=32 Identities=13% Similarity=-0.007 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHhccCCccCCCC
Q 012325 429 WAMLALIDAGQVRINCCCSTLKVTLSLEREFSINSC 464 (466)
Q Consensus 429 ~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~~~~~~~ 464 (466)
-|..||.+.+ .-++++++||.+.+.+.+++.+
T Consensus 45 ~a~~AL~~t~----~nve~A~ewL~~~~~d~d~d~p 76 (83)
T 2dai_A 45 RATKALQLNH----MSVPQAMEWLIEHAEDPTIDTP 76 (83)
T ss_dssp HHHHHHHHTT----SCHHHHHHHHHHGGGCSTTCCC
T ss_pred HHHHHHHHhC----CCHHHHHHHHHHCCCCcccccC
Confidence 3445555542 2488999999999999888754
No 121
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=23.46 E-value=2e+02 Score=28.99 Aligned_cols=98 Identities=17% Similarity=0.288 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhc---CCch--hhHHHHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCCccCCCCCCCchhhHHHHHH
Q 012325 164 DTAFAVQAIIST---NLVE--EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKA 238 (466)
Q Consensus 164 DTa~a~~AL~~a---g~~~--~~~~~l~~a~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~f~~~~~~~pd~D~Ta~al~a 238 (466)
.++|.++|+..+ |... +.-+.+++.+++|.+.+.-. |-|-..+-....--=+|...+... ++=+||.-+.+
T Consensus 66 niGfgL~A~~vA~e~G~I~r~ea~~R~~~tL~~l~~~~r~~---G~fyhwyD~~Tg~~lpf~~~d~~~-StVDTa~L~~G 141 (430)
T 3eu8_A 66 GSGFGIMAILAGIDRGYVSREEGLRRMEKIVGFLEKADRFK---GAYPHWWNGETGHVQPFGQKDNGG-DLVETAFLMQG 141 (430)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCCBT---TBCCSEEETTTCCBCCBTTTBCSE-EHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhchhcC---CcCccccCCCCCCcCCCCcccCcc-cHHHHHHHHHH
Confidence 488888888754 6543 34567888899998765533 555443321111111233333222 34468888888
Q ss_pred hHhhhcccccccCCccchHHHHHHHHHHHh
Q 012325 239 SLLLSKLSSAIVGEPIETKRLYDSVNVIFS 268 (466)
Q Consensus 239 L~~~~~~~~~~~g~~~~~~~i~~av~~Ll~ 268 (466)
|+.+++-- .+....+..|++-++-|.+
T Consensus 142 lL~ar~YF---~~~~~~E~~i~~~~~~L~~ 168 (430)
T 3eu8_A 142 LLAVHQYY---AEGSAEEKKLAGRIDKLWR 168 (430)
T ss_dssp HHHHHHHH---TTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---cCCChhHHHHHHHHHHHHH
Confidence 87765411 1111234556666666654
No 122
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.28 E-value=49 Score=23.77 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhccCCccCCC
Q 012325 428 AWAMLALIDAGQVRINCCCSTLKVTLSLEREFSINS 463 (466)
Q Consensus 428 A~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~~~~~~ 463 (466)
..|..||...+. -++++++||.+...+.+++.
T Consensus 24 ~~a~~AL~~t~~----nve~A~e~L~~~~~d~d~d~ 55 (63)
T 2dak_A 24 DQALKALRATNN----SLERAVDWIFSHIDDLDAEA 55 (63)
T ss_dssp HHHHHHHHHTTS----CSHHHHHHHHHHHHSCCSSS
T ss_pred HHHHHHHHHcCC----CHHHHHHHHHhCCCCccccc
Confidence 456677777653 38999999999988887763
No 123
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.01 E-value=84 Score=23.41 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhccCCccCCC
Q 012325 428 AWAMLALIDAGQVRINCCCSTLKVTLSLEREFSINS 463 (466)
Q Consensus 428 A~ALlaL~~ag~~~~~~i~rgv~~L~~~q~~~~~~~ 463 (466)
.-|..||.+.+. ..++++++||++.+.+.+++.
T Consensus 24 ~~a~~AL~~t~n---~~ve~A~ewL~~~~~d~d~d~ 56 (74)
T 2dag_A 24 DACRKAVYYTGN---SGAEAAMNWVMSHMDDPDFAN 56 (74)
T ss_dssp HHHHHHHHHHTS---CCHHHHHHHHHHHTTSTTSSS
T ss_pred HHHHHHHHHhCC---CCHHHHHHHHHhCCCCccccc
Confidence 455667776653 138999999999998887753
No 124
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=22.48 E-value=75 Score=22.55 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=21.0
Q ss_pred chHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 012325 163 WDTAFAVQAIISTNLVEEYGATLKKAHKYIKDS 195 (466)
Q Consensus 163 wDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~~ 195 (466)
+|.-.++.||..++-. +++|++||.+.
T Consensus 30 ~d~~~~~~AL~~~~gn------ve~Ave~L~~~ 56 (58)
T 1wr1_B 30 FDFDRNVAALRRSGGS------VQGALDSLLNG 56 (58)
T ss_dssp CCHHHHHHHHHHHTSC------HHHHHHHHHHT
T ss_pred CcHHHHHHHHHHhCCC------HHHHHHHHHhC
Confidence 4567788999987642 78899999875
No 125
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=22.32 E-value=70 Score=21.46 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=19.7
Q ss_pred chHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 012325 163 WDTAFAVQAIISTNLVEEYGATLKKAHKYIKD 194 (466)
Q Consensus 163 wDTa~a~~AL~~ag~~~~~~~~l~~a~~wL~~ 194 (466)
+|.-.++.||..++-. +.+|++||.+
T Consensus 20 ~d~~~~~~AL~~~~gn------v~~Ave~L~~ 45 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGS------VQGALDSLLN 45 (46)
T ss_dssp CCHHHHHHHHHHHTTC------HHHHHHHHHC
T ss_pred CcHHHHHHHHHHhCCC------HHHHHHHHHc
Confidence 4566778999887642 6789999975
Done!