BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012326
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 284/457 (62%), Gaps = 14/457 (3%)
Query: 4 LKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGK 63
+K+ E + T+ +RI +HSH++GLGLD S A+ + G+VGQ AR+A GVI+++IK K
Sbjct: 1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK 60
Query: 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAI 123
+AGRAVL+AG PGTGKTA+A+ +A+ LG + PF + GSE++S E+ KTE LM+ FR+AI
Sbjct: 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120
Query: 124 GVRIKXXXXX---XXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETV-YDLGGKMIEAL 179
G+RIK + + P T L + E+L
Sbjct: 121 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL 180
Query: 180 GKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCV 239
KE+V++GDVI I+ SG + + GR + + ++D ++V P G++ K+KE++ V
Sbjct: 181 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEA--EEYVPLPKGDVHKKKEIIQDV 238
Query: 240 TLHEIDVINSRTQG-------FLALFTGDTGEIRAEVREQIDTKVAEWREEGKAEIVPGV 292
TLH++DV N+R QG L EI ++R +I+ V ++ ++G AE+VPGV
Sbjct: 239 TLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGV 298
Query: 293 LFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGT-NYKSAHGIPMDLLDRL 351
LF+DEVHMLD+ECF++L+RALE+ +API++ A+NRG IRGT + S HGIP+DLLDR+
Sbjct: 299 LFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV 358
Query: 352 LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ 411
+II T YT E+++I+ IR Q E + ++E+A L +G T+LRY++ L+T A L ++
Sbjct: 359 MIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAK 418
Query: 412 KRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 448
+E + ++ + LF D + S + L + Q +Y+
Sbjct: 419 INGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYM 455
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 159/217 (73%), Positives = 190/217 (87%), Gaps = 1/217 (0%)
Query: 236 VHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFI 295
VH V+LHEIDVINSRTQGFLALF+GDTGEI++EVREQI+ KVAEWREEGKAEI+PGVLFI
Sbjct: 136 VHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195
Query: 296 DEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIIS 355
DEVHMLD+E FSFLNRALE++MAP+L++ATNRGITRIRGT+Y+S HGIP+DLLDRLLI+S
Sbjct: 196 DEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVS 255
Query: 356 TKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKG 415
T PY+ + ++IL IRC+EEDVEM+EDA +LTR+G TSLRYAI LITAA+L +KRKG
Sbjct: 256 TTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKG 315
Query: 416 KVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI-NEV 451
V+V DI RVY LFLD RSTQY+ EYQ ++ NE+
Sbjct: 316 TEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNEL 352
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/127 (78%), Positives = 114/127 (89%)
Query: 2 AELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKE 61
A K+ E RD+TRIERIGAHSHIRGLGLD +LE R S+GMVGQL AR+AAGV+L+MI+E
Sbjct: 6 ATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIRE 65
Query: 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRK 121
GKIAGRAVLIAGQPGTGKTAIAMGMA++LG +TPF I+GSEIFSLEMSKTEAL QAFR+
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRR 125
Query: 122 AIGVRIK 128
+IGVRIK
Sbjct: 126 SIGVRIK 132
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/218 (72%), Positives = 186/218 (85%), Gaps = 1/218 (0%)
Query: 235 VVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLF 294
VVH V+LHEIDVINSRTQGFLALF+GDTGEI++EVREQI+ KVAEWREEGKAEI+PGVLF
Sbjct: 153 VVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLF 212
Query: 295 IDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLII 354
IDEVH LD+E FSFLNRALE++ AP+L+ ATNRGITRIRGT+Y+S HGIP+DLLDRLLI+
Sbjct: 213 IDEVHXLDIESFSFLNRALESDXAPVLIXATNRGITRIRGTSYQSPHGIPIDLLDRLLIV 272
Query: 355 STKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRK 414
ST PY+ + ++IL IRC+EEDVE +EDA +LTR+G TSLRYAI LITAA+L +KRK
Sbjct: 273 STTPYSEKDTKQILRIRCEEEDVEXSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK 332
Query: 415 GKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI-NEV 451
G V+V DI RVY LFLD RSTQY EYQ ++ NE+
Sbjct: 333 GTEVQVDDIKRVYSLFLDESRSTQYXKEYQDAFLFNEL 370
Score = 191 bits (486), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 2 AELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKE 61
A K+ E RD+TRIERIGAHSHIRGLGLD +LE R S+G VGQL AR+AAGV+L+ I+E
Sbjct: 21 ATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGXVGQLAARRAAGVVLEXIRE 80
Query: 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRK 121
GKIAGRAVLIAGQPGTGKTAIA G A++LG +TPF I+GSEIFSLE SKTEAL QAFR+
Sbjct: 81 GKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRR 140
Query: 122 AIGVRIK 128
+IGVRIK
Sbjct: 141 SIGVRIK 147
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 143/221 (64%), Gaps = 8/221 (3%)
Query: 235 VVHCVTLHEIDVINSRTQG---FLA----LFTGDTGEIRAEVREQIDTKVAEWREEGKAE 287
++ VTLH++DV N+R QG L+ L EI ++R +I+ V ++ ++G AE
Sbjct: 145 IIQDVTLHDLDVANARPQGGQDILSXXGQLXKPKKTEITDKLRGEINKVVNKYIDQGIAE 204
Query: 288 IVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGT-NYKSAHGIPMD 346
+VPGVLF+DEVH LD+ECF++L+RALE+ +API++ A+NRG IRGT + S HGIP+D
Sbjct: 205 LVPGVLFVDEVHXLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLD 264
Query: 347 LLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAA 406
LLDR+ II T YT E ++I+ IR Q E + ++E+A L +G T+LRY++ L+T A
Sbjct: 265 LLDRVXIIRTXLYTPQEXKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPA 324
Query: 407 ALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQY 447
L ++ +E + ++ + LF D + S + L + Q +Y
Sbjct: 325 NLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKY 365
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 92/124 (74%)
Query: 5 KLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKI 64
K+ E + T+ +RI +HSH++GLGLD S A+ + G+VGQ AR+A GVI+++IK K
Sbjct: 16 KIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKX 75
Query: 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIG 124
AGRAVL+AG PGTGKTA+A+ +A+ LG + PF GSE++S E+ KTE L + FR+AIG
Sbjct: 76 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIG 135
Query: 125 VRIK 128
+RIK
Sbjct: 136 LRIK 139
>pdb|2CQA|A Chain A, Solution Structure Of Rsgi Ruh-039, A Fragment Of C-
Terminal Domain Of Ruvb-Like 2 From Human Cdna
Length = 95
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 142 QIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSGKITK 201
QIDRPAT EMET+YDLG KMIE+L K+KVQ+GDVI IDK +GKI+K
Sbjct: 22 QIDRPATGTGSKVGKLTLKTT-EMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISK 80
Query: 202 LGRSFSRSRDYDAMG 216
LGRSF+R+R + G
Sbjct: 81 LGRSFTRARSGPSSG 95
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 292 VLFIDEVHMLDVECFSFLNRALEN--EMAPILVVATNRGITRIRGTNYKSAHGIPMDLLD 349
V IDEVHML F+ L + LE E L+ T+ +P+ +L
Sbjct: 129 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD-------------PQKLPVTILS 175
Query: 350 RLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALA 409
R L K ++IR L+ EE + A QLL R EG SLR A+ L T A+A
Sbjct: 176 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSL-TDQAIA 233
Query: 410 S 410
S
Sbjct: 234 S 234
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 55 ILQMIKEGKIAGR---AVLIAGQPGTGKTAIAMGMAKSLGLET 94
+L + G GR A L +G G GKT+IA +AK L ET
Sbjct: 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 73
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 292 VLFIDEVHMLDVECFSFLNRALEN--EMAPILVVATNRGITRIRGTNYKSAHGIPMDLLD 349
V IDEVHML F+ L + LE E L+ T+ +P+ +L
Sbjct: 144 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD-------------PQKLPVTILS 190
Query: 350 RLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALA 409
R L K ++IR L+ EE + A QLL R EG SLR A+ L T A+A
Sbjct: 191 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSL-TDQAIA 248
Query: 410 S 410
S
Sbjct: 249 S 249
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 55 ILQMIKEGKIAGR---AVLIAGQPGTGKTAIAMGMAKSLGLET 94
+L + G GR A L +G G GKT+IA +AK L ET
Sbjct: 46 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 88
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 292 VLFIDEVHMLDVECFSFLNRALEN--EMAPILVVATNRGITRIRGTNYKSAHGIPMDLLD 349
V IDEVHML F+ L + LE E L+ T+ +P+ +L
Sbjct: 125 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD-------------PQKLPVTILS 171
Query: 350 RLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALA 409
R L K ++IR L+ EE + A QLL R EG SLR A+ L T A+A
Sbjct: 172 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSL-TDQAIA 229
Query: 410 S 410
S
Sbjct: 230 S 230
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 55 ILQMIKEGKIAGR---AVLIAGQPGTGKTAIAMGMAKSLGLET 94
+L + G GR A L +G G GKT+IA +AK L ET
Sbjct: 27 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 69
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 292 VLFIDEVHMLDVECFSFLNRALEN--EMAPILVVATNRGITRIRGTNYKSAHGIPMDLLD 349
V IDEVHML F+ L + LE E L+ T+ +P+ +L
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD-------------PQKLPVTILS 168
Query: 350 RLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALA 409
R L K ++IR L+ EE + A QLL R EG SLR A+ L T A+A
Sbjct: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSL-TDQAIA 226
Query: 410 S 410
S
Sbjct: 227 S 227
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 55 ILQMIKEGKIAGR---AVLIAGQPGTGKTAIAMGMAKSLGLET 94
+L + G GR A L +G G GKT+IA +AK L ET
Sbjct: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 292 VLFIDEVHMLDVECFSFLNRALEN--EMAPILVVATNRGITRIRGTNYKSAHGIPMDLLD 349
V IDEVHML F+ L + LE E L+ T+ +P+ +L
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD-------------PQKLPVTILS 168
Query: 350 RLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALA 409
R L K ++IR L+ EE + A QLL R EG SLR A+ L T A+A
Sbjct: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSL-TDQAIA 226
Query: 410 S 410
S
Sbjct: 227 S 227
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 55 ILQMIKEGKIAGR---AVLIAGQPGTGKTAIAMGMAKSLGLET 94
+L + G GR A L +G G GKT+IA +AK L ET
Sbjct: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 292 VLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDR 350
V IDEVHML F+ L + LE + ++AT +P+ +L R
Sbjct: 144 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT------------ADPQKLPVTILSR 191
Query: 351 LLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALAS 410
L K ++IR L+ EE + A QLL R EG SLR A+ L T A+AS
Sbjct: 192 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSL-TDQAIAS 249
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 55 ILQMIKEGKIAGR---AVLIAGQPGTGKTAIAMGMAKSLGLET 94
+L + G GR A L +G G GKT+IA +AK L ET
Sbjct: 46 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 88
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 45 QLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104
+LP R A + + I G R +L+ G PGTGKT IA +A G F +I+G EI
Sbjct: 221 ELPLRHPA--LFKAI--GVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEI 274
Query: 105 FSLEMSKTEA-LMQAFRKA 122
S ++E+ L +AF +A
Sbjct: 275 MSKLAGESESNLRKAFEEA 293
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 45 QLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104
+LP R A + + I G R +L+ G PGTGKT IA +A G F +I+G EI
Sbjct: 221 ELPLRHPA--LFKAI--GVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEI 274
Query: 105 FSLEMSKTEA-LMQAFRKA 122
S ++E+ L +AF +A
Sbjct: 275 MSKLAGESESNLRKAFEEA 293
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 45 QLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104
+LP R A + + I G R +L+ G PGTGKT IA +A G F +I+G EI
Sbjct: 221 ELPLRHPA--LFKAI--GVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEI 274
Query: 105 FSLEMSKTEA-LMQAFRKA 122
S ++E+ L +AF +A
Sbjct: 275 MSKLAGESESNLRKAFEEA 293
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 45 QLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104
+LP R A + + I G R +L+ G PGTGKT IA +A G F +I+G EI
Sbjct: 221 ELPLRHPA--LFKAI--GVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEI 274
Query: 105 FSLEMSKTEA-LMQAFRKA 122
S ++E+ L +AF +A
Sbjct: 275 MSKLAGESESNLRKAFEEA 293
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEA-L 115
+ +K G + VL G PG GKT +A +A + F I G E+ ++ ++EA +
Sbjct: 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANFISIKGPELLTMWFGESEANV 559
Query: 116 MQAFRKA 122
+ F KA
Sbjct: 560 REIFDKA 566
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 45 QLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104
+LP R A + + I G R +L+ G PGTGKT IA +A G F +I+G EI
Sbjct: 221 ELPLRHPA--LFKAI--GVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEI 274
Query: 105 FSLEMSKTEA-LMQAFRKA 122
S ++E+ L +AF +A
Sbjct: 275 MSKLAGESESNLRKAFEEA 293
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 45 QLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104
+LP R A + + I G R +L+ G PGTGKT IA +A G F +I+G EI
Sbjct: 221 ELPLRHPA--LFKAI--GVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEI 274
Query: 105 FSLEMSKTEA-LMQAFRKA 122
S ++E+ L +AF +A
Sbjct: 275 MSKLAGESESNLRKAFEEA 293
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEA-L 115
+ +K G + VL G PG GKT +A +A + F I G E+ ++ ++EA +
Sbjct: 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANFISIKGPELLTMWFGESEANV 559
Query: 116 MQAFRKA 122
+ F KA
Sbjct: 560 REIFDKA 566
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTE-ALMQAFR 120
G + VL+AG PG GKT +A +A GL F + G E+ ++ + ++E A+ Q F+
Sbjct: 40 GLVTPAGVLLAGPPGCGKTLLAKAVANESGLN--FISVKGPELLNMYVGESERAVRQVFQ 97
Query: 121 KA 122
+A
Sbjct: 98 RA 99
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEA-L 115
+ +K G + VL G PG GKT +A +A + F I G E+ ++ ++EA +
Sbjct: 40 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANFISIKGPELLTMWFGESEANV 97
Query: 116 MQAFRKA 122
+ F KA
Sbjct: 98 REIFDKA 104
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 292 VLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRL 351
++F+DE L + + L R +E ++ I NY S P+ R
Sbjct: 105 IIFLDEADALTADAQAALRRTME---------MYSKSCRFILSCNYVSRIIEPIQ--SRC 153
Query: 352 LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ 411
+ KP ++ ++K L C++E V++ ED + L + G R AI+ + AA
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS-GGDFRKAINALQGAA---- 208
Query: 412 KRKGKVVEVQDIDRVYRL 429
+ EV D D +Y++
Sbjct: 209 ----AIGEVVDADTIYQI 222
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 69 VLIAGQPGTGKTAIAMGMAKSL 90
+L +G PGTGKTA A+ +A+ L
Sbjct: 41 LLFSGPPGTGKTATAIALARDL 62
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 292 VLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRL 351
++F+DE L + + L R +E ++ I NY S P+ R
Sbjct: 105 IIFLDEADALTADAQAALRRTME---------MYSKSCRFILSCNYVSRIIEPIQ--SRC 153
Query: 352 LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ 411
+ KP ++ ++K L C++E V++ ED + L + G R AI+ + AA
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS-GGDFRKAINALQGAA---- 208
Query: 412 KRKGKVVEVQDIDRVYRL 429
+ EV D D +Y++
Sbjct: 209 ----AIGEVVDADTIYQI 222
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 69 VLIAGQPGTGKTAIAMGMAKSL 90
+L +G PGTGKTA A+ +A+ L
Sbjct: 41 LLFSGPPGTGKTATAIALARDL 62
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 27 LGLD-SSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMG 85
LG++ ++ E +V E ++ Q+ ++ A +++IK R VL+ G+PGTGK+ +
Sbjct: 23 LGIEFTTTEEIEVPEKLIDQVIGQEHA---VEVIKTAANQKRHVLLIGEPGTGKSMLGQA 79
Query: 86 MAKSLGLET 94
MA+ L ET
Sbjct: 80 MAELLPTET 88
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107
+ +L+ G PGTGKT +A +A + PF ISGS+ L
Sbjct: 50 KGILLVGPPGTGKTLLARAVAGEANV--PFFHISGSDFVEL 88
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 292 VLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRL 351
++F+DE L + L R +E + ++N + I NY S P+ R
Sbjct: 113 IIFLDEADALTQDAQQALRRTME-------MFSSN--VRFILSCNYSSKIIEPIQ--SRC 161
Query: 352 LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ 411
I +P ++I K L + E +E+ E+ Q + + EG +R AI+++ AAA +
Sbjct: 162 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAALDK 220
Query: 412 K 412
K
Sbjct: 221 K 221
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107
GKI + VL+ G PGTGKT +A +A + PF ISGS+ +
Sbjct: 42 GKIP-KGVLMVGPPGTGKTLLAKAIAGE--AKVPFFTISGSDFVEM 84
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 63 KIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQ 117
+ R +L+ G PGTGK+ +A +A T F+ IS S++ S + ++E L++
Sbjct: 164 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS-ISSSDLVSKWLGESEKLVK 217
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 63 KIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQ 117
+ R +L+ G PGTGK+ +A +A T F IS S++ S + ++E L++
Sbjct: 42 RTPWRGILLFGPPGTGKSYLAKAVATEANNST-FFSISSSDLVSKWLGESEKLVK 95
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISG 101
+ VL+ G PGTGKT +A +A ++G F+ SG
Sbjct: 216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91
+ G + +AG PG GKT++A +AKSLG
Sbjct: 106 LKGPILCLAGPPGVGKTSLAKSIAKSLG 133
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107
+ +L+ G PGTG T +A +A + PF ISGS+ L
Sbjct: 50 KGILLVGPPGTGATLLARAVAGEANV--PFFHISGSDFVEL 88
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104
R VL+ G PGTGKT + +A S + F ++GSE
Sbjct: 207 RGVLLYGPPGTGKTMLVKAVANS--TKAAFIRVNGSEF 242
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 31/130 (23%)
Query: 292 VLFIDEVHMLDVECFSFLNRALEN------------------EMAPI-LVVATNRGITRI 332
VLFIDE+H L+ L A+E+ ++ P LV AT R + +
Sbjct: 105 VLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR--SGL 162
Query: 333 RGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGE 392
+ +SA GI ++L YT E+++I+ DVE+ + A +++ +
Sbjct: 163 LSSPLRSAFGIILEL---------DFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSR 213
Query: 393 GTSLRYAIHL 402
GT R AI L
Sbjct: 214 GTP-RIAIRL 222
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALM 116
+ K + +L+ G PGTGK+ +A +A + F +S S++ S M ++E L+
Sbjct: 42 HLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVSKWMGESEKLV 99
Query: 117 Q 117
+
Sbjct: 100 K 100
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALM 116
+ K + +L+ G PGTGK+ +A +A + F +S S++ S M ++E L+
Sbjct: 60 HLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTFFSVSSSDLVSKWMGESEKLV 117
Query: 117 Q 117
+
Sbjct: 118 K 118
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALM 116
+ K + +L+ G PGTGK+ +A +A + F +S S++ S M ++E L+
Sbjct: 51 HLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTFFSVSSSDLVSKWMGESEKLV 108
Query: 117 Q 117
+
Sbjct: 109 K 109
>pdb|3BH0|A Chain A, Atpase Domain Of G40p
Length = 315
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 69 VLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEAL 115
VLIA +P GKTA A+ AK++ + SLEM K E +
Sbjct: 71 VLIAARPSMGKTAFALKQAKNMSDNDDVV-----NLHSLEMGKKENI 112
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALM 116
+ K + +L+ G PGTGK+ +A +A + F +S S++ S M ++E L+
Sbjct: 75 HLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTFFSVSSSDLVSKWMGESEKLV 132
Query: 117 Q 117
+
Sbjct: 133 K 133
>pdb|3BGW|A Chain A, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|B Chain B, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|C Chain C, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|D Chain D, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|E Chain E, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|F Chain F, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
Length = 444
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 69 VLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEAL 115
VLIA +P GKTA A+ AK++ + SLEM K E +
Sbjct: 200 VLIAARPSMGKTAFALKQAKNMSDNDDVV-----NLHSLEMGKKENI 241
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 54 VILQMIKEGKIAG-----RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE 108
V+ M++ G + +L+ G PGTGKT I +A G F IS S + S
Sbjct: 100 VVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT--FFSISASSLTSKW 157
Query: 109 MSKTEALMQAF 119
+ + E +++A
Sbjct: 158 VGEGEKMVRAL 168
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 69 VLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM 109
VLI G+PG GKTAI G+A+ + + G I SL+M
Sbjct: 58 VLI-GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 97
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGS---EIF-SLEMSKTEALMQAFRK 121
+ VL+ G PGTGKT +A +A PF + GS E+F L S+ L + +K
Sbjct: 45 KGVLLVGPPGTGKTLLAKAVAGE--AHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKK 101
>pdb|2Y7M|A Chain A, Structure Of N-Terminal Domain Of Candida Albicans Als9-2
(Pt Derivative)
pdb|2Y7N|A Chain A, Structure Of N-Terminal Domain Of Candida Albicans Als9-2
- Apo Form
Length = 312
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 418 VEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINEVTIE 454
VE Q++ YR F+D S + + +Y Y NE T E
Sbjct: 246 VEFQNVPAGYRPFVDAYISAENIDKYTLTYANEYTCE 282
>pdb|2YLH|A Chain A, Structure Of N-Terminal Domain Of Candida Albicans Als9-2
G299w Mutant
Length = 312
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 418 VEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINEVTIE 454
VE Q++ YR F+D S + + +Y Y NE T E
Sbjct: 246 VEFQNVPAGYRPFVDAYISAENIDKYTLTYANEYTCE 282
>pdb|2Y7L|A Chain A, Structure Of N-Terminal Domain Of Candida Albicans Als9-2
In Complex With Human Fibrinogen Gamma Peptide
Length = 312
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 418 VEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINEVTIE 454
VE Q++ YR F+D S + + +Y Y NE T E
Sbjct: 246 VEFQNVPAGYRPFVDAYISAENIDKYTLTYANEYTCE 282
>pdb|2Y7O|A Chain A, Structure Of N-Terminal Domain Of Candida Albicans Als9-2
- G299w Mutant
Length = 312
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 418 VEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINEVTIE 454
VE Q++ YR F+D S + + +Y Y NE T E
Sbjct: 246 VEFQNVPAGYRPFVDAYISAENIDKYTLTYANEYTCE 282
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 60 KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLE 93
K+G RA ++ G PG GKT A +A+ LG +
Sbjct: 71 KDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 31/130 (23%)
Query: 292 VLFIDEVHMLDVECFSFLNRALEN------------------EMAPI-LVVATNRGITRI 332
VLFIDE+H L+ L A+E+ ++ P LV AT R + +
Sbjct: 105 VLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR--SGL 162
Query: 333 RGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGE 392
+ +S GI ++L YT E+++I+ DVE+ + A +++ +
Sbjct: 163 LSSPLRSRFGIILEL---------DFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSR 213
Query: 393 GTSLRYAIHL 402
GT R AI L
Sbjct: 214 GTG-RIAIRL 222
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 69 VLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM 109
VLI G+PG GKTAI G+A+ + + G I SL+M
Sbjct: 195 VLI-GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104
+ V++ G PGTGKT +A +A + F +SG+E+
Sbjct: 183 KGVILYGPPGTGKTLLARAVAHH--TDCKFIRVSGAEL 218
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 70 LIAGQPGTGKTAIAMGMAKSL 90
++ G+PG GKTAIA G+A+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQI 225
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107
+ VL+ G PG GKT +A +A PF SGS+ +
Sbjct: 65 KGVLLVGPPGVGKTHLARAVAGE--ARVPFITASGSDFVEM 103
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 31/130 (23%)
Query: 292 VLFIDEVHMLDVECFSFLNRALEN------------------EMAPI-LVVATNRGITRI 332
VLFIDE+H L+ L A+E+ ++ P LV AT R + +
Sbjct: 105 VLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR--SGL 162
Query: 333 RGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGE 392
+ +S GI ++L YT E+++I+ DVE+ + A +++ +
Sbjct: 163 LSSPLRSRFGIILEL---------DFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSR 213
Query: 393 GTSLRYAIHL 402
GT R AI L
Sbjct: 214 GTP-RIAIRL 222
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 69 VLIAGQPGTGKTAIAMGMAKS-LGLETPFAMISGSEIFSLEM 109
VLI G+PG GKTAIA G+A+ + E P ++ + +L+M
Sbjct: 205 VLI-GEPGVGKTAIAEGLAQQIINNEVP-EILRDKRVMTLDM 244
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 31/130 (23%)
Query: 292 VLFIDEVHMLDVECFSFLNRALEN------------------EMAPI-LVVATNRGITRI 332
VLFIDE+H L+ L A+E+ ++ P LV AT R + +
Sbjct: 105 VLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR--SGL 162
Query: 333 RGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGE 392
+ +S GI ++L YT E+++I+ DVE+ + A +++ +
Sbjct: 163 LSSPLRSRFGIILEL---------DFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSR 213
Query: 393 GTSLRYAIHL 402
GT R AI L
Sbjct: 214 GTP-RIAIRL 222
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107
+ VL+ G PG GKT +A +A PF SGS+ +
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGE--ARVPFITASGSDFVEM 112
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 67 RAVLIAGQPGTGKTAIAMGMAKSLGLE 93
R V++ G G+GKT IA G+A GLE
Sbjct: 30 RHVVVMGVSGSGKTTIAHGVADETGLE 56
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107
+ VL+ G PG GKT +A +A PF SGS+ +
Sbjct: 50 KGVLLVGPPGVGKTHLARAVAGE--ARVPFITASGSDFVEM 88
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 45 QLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPF 96
+L A K AG + ++ R +++AG+ G+GKT + K+L E PF
Sbjct: 154 ELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTT----LMKALMQEIPF 201
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107
+ VL+ G PG GKT +A +A PF SGS+ +
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGE--ARVPFITASGSDFVEM 112
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91
+ GR++ + G G+GKT + MA+SLG
Sbjct: 46 LNGRSMYLVGMMGSGKTTVGKIMARSLG 73
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 70 LIAGQPGTGKTAIAMGMAKS-LGLETPFAMISGSEIFSLEMS 110
++ G+PG GKTAI G+A+ + E P + G + +L+M
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGL-KGRRVLALDMG 87
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIG 124
+ V++ G PGTGKT +A +A F I GSE+ + L + K G
Sbjct: 217 KGVILYGAPGTGKTLLAKAVANQTS--ATFLRIVGSELIQKYLGDGPRLCRQIFKVAG 272
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 31/130 (23%)
Query: 292 VLFIDEVHMLDVECFSFLNRALEN------------------EMAPI-LVVATNRGITRI 332
VLFIDE+H L+ L A+E+ ++ P LV AT R + +
Sbjct: 105 VLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATVR--SGL 162
Query: 333 RGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGE 392
+ +S GI ++L YT E+++I+ DVE+ + A +++ +
Sbjct: 163 LSSPLRSRFGIILEL---------DFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSR 213
Query: 393 GTSLRYAIHL 402
GT R AI L
Sbjct: 214 GTP-RIAIRL 222
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 31/130 (23%)
Query: 292 VLFIDEVHMLDVECFSFLNRALEN------------------EMAPI-LVVATNRGITRI 332
VLFIDE+H L+ L A+E+ ++ P LV +T R + +
Sbjct: 105 VLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGSTTR--SGL 162
Query: 333 RGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGE 392
+ +S GI ++L YT E+++I+ DVE+ + A +++ +
Sbjct: 163 LSSPLRSRFGIILEL---------DFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSR 213
Query: 393 GTSLRYAIHL 402
GT R AI L
Sbjct: 214 GTP-RIAIRL 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,730,600
Number of Sequences: 62578
Number of extensions: 456968
Number of successful extensions: 1614
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1522
Number of HSP's gapped (non-prelim): 123
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)