Query 012326
Match_columns 466
No_of_seqs 204 out of 2252
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 01:27:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2680 DNA helicase TIP49, TB 100.0 9.7E-83 2.1E-87 600.0 33.7 450 1-451 1-450 (454)
2 COG1224 TIP49 DNA helicase TIP 100.0 2.6E-80 5.6E-85 596.4 33.4 436 11-448 10-450 (450)
3 KOG1942 DNA helicase, TBP-inte 100.0 4.4E-77 9.4E-82 560.3 30.6 443 4-448 2-456 (456)
4 PF06068 TIP49: TIP49 C-termin 100.0 7.5E-78 1.6E-82 589.6 23.5 388 17-407 1-396 (398)
5 KOG0989 Replication factor C, 100.0 5.2E-29 1.1E-33 237.8 17.5 106 290-408 130-236 (346)
6 PRK14956 DNA polymerase III su 100.0 4.1E-28 8.8E-33 250.1 22.2 122 290-428 122-244 (484)
7 PRK07003 DNA polymerase III su 100.0 3E-28 6.5E-33 259.4 20.1 122 290-428 120-242 (830)
8 COG2256 MGS1 ATPase related to 100.0 6.5E-28 1.4E-32 238.1 17.7 217 27-428 12-236 (436)
9 PRK14958 DNA polymerase III su 100.0 2.3E-27 4.9E-32 250.3 23.0 238 27-428 4-242 (509)
10 PRK14960 DNA polymerase III su 100.0 3E-27 6.4E-32 249.6 22.8 238 27-428 3-241 (702)
11 COG2812 DnaX DNA polymerase II 100.0 4.4E-28 9.5E-33 251.6 15.6 237 29-429 6-243 (515)
12 PRK07994 DNA polymerase III su 100.0 8.5E-27 1.9E-31 249.3 23.7 238 27-428 4-242 (647)
13 PRK12323 DNA polymerase III su 99.9 1E-26 2.2E-31 245.1 22.3 141 266-428 106-247 (700)
14 PRK14964 DNA polymerase III su 99.9 2.6E-26 5.5E-31 239.2 23.7 237 28-428 2-239 (491)
15 PRK14949 DNA polymerase III su 99.9 1.3E-26 2.8E-31 251.1 22.2 120 290-426 120-240 (944)
16 PRK08691 DNA polymerase III su 99.9 5.4E-26 1.2E-30 242.1 23.6 122 290-428 120-242 (709)
17 PRK14952 DNA polymerase III su 99.9 5.9E-26 1.3E-30 241.6 22.4 123 290-428 119-242 (584)
18 PLN03025 replication factor C 99.9 1.2E-25 2.6E-30 225.7 22.7 119 290-426 100-219 (319)
19 PRK06645 DNA polymerase III su 99.9 1.5E-25 3.2E-30 235.2 24.2 244 24-428 6-254 (507)
20 PRK14957 DNA polymerase III su 99.9 1.8E-25 4E-30 235.9 23.1 122 290-428 120-242 (546)
21 PRK14961 DNA polymerase III su 99.9 1.5E-25 3.2E-30 228.7 21.8 122 290-428 120-242 (363)
22 PRK14951 DNA polymerase III su 99.9 8.2E-26 1.8E-30 241.3 20.3 122 290-428 125-247 (618)
23 PF05496 RuvB_N: Holliday junc 99.9 1.5E-26 3.2E-31 215.1 12.5 211 25-410 10-229 (233)
24 KOG0739 AAA+-type ATPase [Post 99.9 1.4E-26 3.1E-31 219.5 12.2 211 33-278 126-352 (439)
25 PRK14969 DNA polymerase III su 99.9 3.4E-25 7.4E-30 235.1 23.5 122 290-428 120-242 (527)
26 KOG0730 AAA+-type ATPase [Post 99.9 4.5E-26 9.6E-31 236.4 16.0 208 33-276 427-652 (693)
27 KOG0991 Replication factor C, 99.9 7.2E-26 1.6E-30 208.2 14.3 104 290-406 114-218 (333)
28 PRK08451 DNA polymerase III su 99.9 5.7E-25 1.2E-29 231.0 22.9 121 290-427 118-239 (535)
29 PRK14962 DNA polymerase III su 99.9 5.1E-25 1.1E-29 230.2 21.1 122 290-428 118-240 (472)
30 COG2255 RuvB Holliday junction 99.9 7.5E-25 1.6E-29 207.4 19.5 244 28-447 15-273 (332)
31 PRK07764 DNA polymerase III su 99.9 6.4E-25 1.4E-29 241.8 21.8 121 290-426 121-242 (824)
32 PRK14959 DNA polymerase III su 99.9 1.1E-24 2.5E-29 231.1 22.8 121 290-427 120-241 (624)
33 PRK14965 DNA polymerase III su 99.9 1.1E-24 2.4E-29 233.8 22.6 120 290-426 120-240 (576)
34 PRK05896 DNA polymerase III su 99.9 9.1E-25 2E-29 230.8 21.4 122 290-428 120-242 (605)
35 PRK05563 DNA polymerase III su 99.9 1.3E-24 2.8E-29 232.2 22.8 121 290-427 120-241 (559)
36 KOG0734 AAA+-type ATPase conta 99.9 4.1E-25 8.9E-30 223.2 15.7 200 26-256 286-507 (752)
37 PRK09111 DNA polymerase III su 99.9 2.3E-24 5E-29 230.5 21.7 239 26-428 11-255 (598)
38 PRK07133 DNA polymerase III su 99.9 1.6E-24 3.5E-29 233.0 19.9 122 290-428 119-241 (725)
39 COG1222 RPT1 ATP-dependent 26S 99.9 1.2E-24 2.5E-29 212.0 16.6 202 30-256 141-358 (406)
40 KOG2028 ATPase related to the 99.9 2.5E-24 5.3E-29 209.2 17.5 225 24-428 123-366 (554)
41 PRK14953 DNA polymerase III su 99.9 8.5E-24 1.8E-28 222.0 22.1 121 290-427 120-241 (486)
42 PRK14963 DNA polymerase III su 99.9 1.1E-23 2.3E-28 222.0 20.7 121 290-428 117-238 (504)
43 PRK14955 DNA polymerase III su 99.9 2.4E-23 5.1E-28 214.9 22.5 125 290-427 128-254 (397)
44 KOG0733 Nuclear AAA ATPase (VC 99.9 1.4E-23 3E-28 215.3 19.9 213 33-281 504-738 (802)
45 PRK06647 DNA polymerase III su 99.9 1.6E-23 3.5E-28 223.1 20.0 121 290-427 120-241 (563)
46 COG1223 Predicted ATPase (AAA+ 99.9 4.5E-23 9.7E-28 192.6 18.5 231 33-429 114-354 (368)
47 PRK04195 replication factor C 99.9 9.1E-23 2E-27 215.7 21.9 216 27-427 2-222 (482)
48 PRK14954 DNA polymerase III su 99.9 1.1E-22 2.4E-27 218.1 21.5 125 290-427 128-254 (620)
49 PRK06305 DNA polymerase III su 99.9 2.2E-22 4.7E-27 210.1 21.7 121 290-427 122-243 (451)
50 KOG0738 AAA+-type ATPase [Post 99.9 6.1E-23 1.3E-27 201.2 15.4 215 34-281 206-437 (491)
51 PRK14948 DNA polymerase III su 99.9 2.3E-22 5E-27 216.5 21.4 119 290-426 122-241 (620)
52 PRK00080 ruvB Holliday junctio 99.9 6.4E-22 1.4E-26 199.5 23.3 128 290-430 103-250 (328)
53 PRK14950 DNA polymerase III su 99.9 2.8E-22 6.1E-27 216.1 20.5 121 290-427 121-242 (585)
54 TIGR02397 dnaX_nterm DNA polym 99.9 5.4E-22 1.2E-26 202.0 21.4 122 290-428 118-240 (355)
55 PRK14971 DNA polymerase III su 99.9 5E-22 1.1E-26 214.0 21.7 120 290-426 122-242 (614)
56 PRK12402 replication factor C 99.9 9.5E-22 2.1E-26 198.6 21.8 121 290-428 126-247 (337)
57 PRK00440 rfc replication facto 99.9 1.8E-21 3.8E-26 195.1 23.0 121 290-428 103-224 (319)
58 PRK14970 DNA polymerase III su 99.9 7.4E-22 1.6E-26 202.1 20.4 122 290-428 109-231 (367)
59 KOG0733 Nuclear AAA ATPase (VC 99.9 6.1E-22 1.3E-26 203.2 17.7 194 37-256 187-397 (802)
60 TIGR00635 ruvB Holliday juncti 99.9 1.7E-21 3.7E-26 194.4 20.5 144 290-449 82-245 (305)
61 KOG0736 Peroxisome assembly fa 99.9 5.4E-23 1.2E-27 215.6 7.1 158 34-214 666-836 (953)
62 PRK13341 recombination factor 99.9 3.2E-21 6.9E-26 210.4 20.7 126 290-428 110-245 (725)
63 PRK13342 recombination factor 99.9 5.2E-21 1.1E-25 198.6 20.7 122 290-429 93-218 (413)
64 KOG0735 AAA+-type ATPase [Post 99.9 3.6E-21 7.8E-26 200.3 16.8 212 39-284 666-893 (952)
65 KOG0730 AAA+-type ATPase [Post 99.9 5.6E-20 1.2E-24 191.3 25.0 361 40-444 184-687 (693)
66 KOG0731 AAA+-type ATPase conta 99.9 7.9E-21 1.7E-25 203.0 18.7 156 37-214 308-475 (774)
67 TIGR01243 CDC48 AAA family ATP 99.9 2.6E-19 5.6E-24 198.5 30.8 175 35-237 173-356 (733)
68 CHL00195 ycf46 Ycf46; Provisio 99.9 5.4E-20 1.2E-24 192.7 22.7 238 28-431 216-464 (489)
69 PHA02544 44 clamp loader, smal 99.9 8.1E-20 1.8E-24 183.2 22.2 117 290-425 101-226 (316)
70 TIGR02902 spore_lonB ATP-depen 99.9 3.6E-20 7.9E-25 197.3 20.7 137 290-428 176-330 (531)
71 PTZ00112 origin recognition co 99.8 2.8E-19 6E-24 191.8 26.0 151 290-452 870-1030(1164)
72 COG0465 HflB ATP-dependent Zn 99.8 4.6E-21 9.9E-26 201.5 11.4 198 34-256 144-356 (596)
73 PRK09112 DNA polymerase III su 99.8 1.3E-19 2.8E-24 183.2 20.9 101 290-405 142-243 (351)
74 TIGR02928 orc1/cdc6 family rep 99.8 5.5E-19 1.2E-23 180.6 24.4 150 290-448 130-294 (365)
75 COG1474 CDC6 Cdc6-related prot 99.8 5.1E-19 1.1E-23 179.5 23.6 243 31-428 8-263 (366)
76 TIGR02881 spore_V_K stage V sp 99.8 1.3E-19 2.8E-24 176.9 17.8 115 290-410 106-238 (261)
77 KOG2035 Replication factor C, 99.8 1.1E-18 2.3E-23 164.9 21.6 147 288-447 126-279 (351)
78 PRK00411 cdc6 cell division co 99.8 1.8E-18 4E-23 178.6 25.7 154 290-452 139-306 (394)
79 PRK07940 DNA polymerase III su 99.8 3.5E-19 7.6E-24 182.4 19.3 97 290-404 118-215 (394)
80 PRK07399 DNA polymerase III su 99.8 7.4E-19 1.6E-23 175.3 20.7 102 290-407 125-226 (314)
81 PTZ00454 26S protease regulato 99.8 8.8E-19 1.9E-23 179.9 21.3 235 33-431 138-387 (398)
82 TIGR01241 FtsH_fam ATP-depende 99.8 9.6E-19 2.1E-23 185.8 20.7 233 34-430 49-295 (495)
83 COG0464 SpoVK ATPases of the A 99.8 6.5E-19 1.4E-23 187.3 18.9 214 31-280 233-466 (494)
84 PRK03992 proteasome-activating 99.8 1.2E-18 2.5E-23 179.4 20.2 237 33-430 124-372 (389)
85 KOG0990 Replication factor C, 99.8 1.6E-19 3.4E-24 173.9 12.5 126 290-428 132-258 (360)
86 CHL00176 ftsH cell division pr 99.8 2.3E-18 4.9E-23 185.9 20.2 233 34-430 177-423 (638)
87 CHL00181 cbbX CbbX; Provisiona 99.8 3E-18 6.4E-23 169.1 18.1 113 290-408 123-252 (287)
88 PRK07471 DNA polymerase III su 99.8 4.7E-18 1E-22 172.7 20.0 98 290-404 142-240 (365)
89 PTZ00361 26 proteosome regulat 99.8 5E-18 1.1E-22 175.5 20.4 236 33-430 176-424 (438)
90 PRK04132 replication factor C 99.8 2.4E-18 5.1E-23 188.9 18.5 120 290-427 631-751 (846)
91 TIGR01243 CDC48 AAA family ATP 99.8 2.9E-18 6.2E-23 190.2 19.3 211 34-277 447-673 (733)
92 KOG0727 26S proteasome regulat 99.8 2.2E-18 4.8E-23 160.7 14.3 217 30-277 145-377 (408)
93 KOG0652 26S proteasome regulat 99.8 2.3E-18 5.1E-23 161.2 13.2 208 21-256 154-378 (424)
94 TIGR02880 cbbX_cfxQ probable R 99.8 1.1E-17 2.4E-22 165.0 17.2 114 290-409 122-252 (284)
95 KOG0728 26S proteasome regulat 99.8 4.1E-18 8.9E-23 158.7 13.0 180 34-238 141-329 (404)
96 TIGR01242 26Sp45 26S proteasom 99.8 4.1E-17 8.9E-22 166.9 20.2 233 33-429 115-362 (364)
97 KOG0737 AAA+-type ATPase [Post 99.8 3.5E-17 7.7E-22 160.7 18.1 103 38-145 90-202 (386)
98 PRK05564 DNA polymerase III su 99.8 1.8E-16 3.9E-21 158.9 23.6 97 290-403 94-191 (313)
99 PRK08084 DNA replication initi 99.7 1.4E-16 3.1E-21 153.1 20.6 124 291-428 99-234 (235)
100 PRK06893 DNA replication initi 99.7 1.8E-16 3.8E-21 151.9 21.0 126 290-428 92-228 (229)
101 PLN00020 ribulose bisphosphate 99.7 2.2E-17 4.7E-22 163.8 14.9 152 62-237 144-308 (413)
102 PRK07993 DNA polymerase III su 99.7 8.8E-17 1.9E-21 161.7 19.4 116 266-404 90-206 (334)
103 TIGR02903 spore_lon_C ATP-depe 99.7 1.2E-16 2.5E-21 173.0 21.7 137 290-428 266-428 (615)
104 CHL00206 ycf2 Ycf2; Provisiona 99.7 6.9E-17 1.5E-21 184.2 19.1 127 62-214 1626-1797(2281)
105 PRK08058 DNA polymerase III su 99.7 7.1E-17 1.5E-21 162.6 16.6 95 290-404 111-206 (329)
106 PRK05707 DNA polymerase III su 99.7 1.7E-16 3.8E-21 159.2 18.9 117 266-404 88-205 (328)
107 PRK06620 hypothetical protein; 99.7 7E-16 1.5E-20 146.0 21.6 124 290-427 86-213 (214)
108 KOG0726 26S proteasome regulat 99.7 1.2E-17 2.6E-22 158.6 8.9 177 32-237 177-366 (440)
109 PRK06871 DNA polymerase III su 99.7 2.5E-16 5.4E-21 157.1 18.9 116 266-404 89-205 (325)
110 KOG0729 26S proteasome regulat 99.7 7E-17 1.5E-21 151.7 13.9 178 33-236 170-357 (435)
111 TIGR00602 rad24 checkpoint pro 99.7 1.6E-16 3.5E-21 170.5 17.8 136 290-426 196-351 (637)
112 PRK08903 DnaA regulatory inact 99.7 1.4E-15 3.1E-20 145.3 22.2 128 290-428 91-224 (227)
113 KOG1969 DNA replication checkp 99.7 2.5E-16 5.5E-21 165.2 18.1 109 290-411 388-519 (877)
114 TIGR03689 pup_AAA proteasome A 99.7 1.2E-16 2.6E-21 167.6 15.7 184 33-238 175-376 (512)
115 CHL00081 chlI Mg-protoporyphyr 99.7 5E-16 1.1E-20 156.0 19.1 134 290-435 145-327 (350)
116 PRK08727 hypothetical protein; 99.7 2.4E-15 5.1E-20 144.4 21.9 126 290-428 94-229 (233)
117 TIGR00390 hslU ATP-dependent p 99.7 1.7E-15 3.8E-20 153.5 21.4 139 290-428 248-428 (441)
118 KOG0740 AAA+-type ATPase [Post 99.7 1.3E-16 2.9E-21 161.8 13.3 203 38-274 151-369 (428)
119 TIGR00678 holB DNA polymerase 99.7 4.8E-16 1E-20 144.3 15.0 91 290-399 97-188 (188)
120 TIGR02639 ClpA ATP-dependent C 99.7 5.2E-16 1.1E-20 171.9 17.0 133 290-431 275-430 (731)
121 PRK13407 bchI magnesium chelat 99.7 1.7E-15 3.7E-20 151.8 18.8 134 290-435 129-311 (334)
122 COG0470 HolB ATPase involved i 99.7 8.4E-16 1.8E-20 154.2 16.2 96 290-409 110-206 (325)
123 TIGR03420 DnaA_homol_Hda DnaA 99.7 9.1E-15 2E-19 139.3 22.1 125 290-427 91-225 (226)
124 PRK05201 hslU ATP-dependent pr 99.7 8.6E-15 1.9E-19 148.5 22.6 141 290-430 250-432 (443)
125 PRK08769 DNA polymerase III su 99.7 2.4E-15 5.3E-20 149.8 17.7 96 290-404 114-210 (319)
126 PRK10733 hflB ATP-dependent me 99.7 3.8E-15 8.3E-20 162.3 20.2 233 36-429 148-391 (644)
127 KOG0741 AAA+-type ATPase [Post 99.6 1.9E-16 4E-21 160.8 7.0 192 62-284 252-463 (744)
128 PRK00149 dnaA chromosomal repl 99.6 5.4E-15 1.2E-19 155.4 18.4 127 290-430 212-349 (450)
129 PRK06090 DNA polymerase III su 99.6 8.4E-15 1.8E-19 145.8 18.7 94 290-404 109-203 (319)
130 PF13177 DNA_pol3_delta2: DNA 99.6 2.6E-15 5.5E-20 136.1 13.1 59 290-360 103-162 (162)
131 TIGR02030 BchI-ChlI magnesium 99.6 1.2E-14 2.6E-19 146.0 19.2 137 290-436 132-315 (337)
132 PRK06964 DNA polymerase III su 99.6 7.5E-15 1.6E-19 147.5 17.6 93 290-403 133-226 (342)
133 KOG0732 AAA+-type ATPase conta 99.6 1.9E-15 4E-20 166.1 14.3 194 37-256 262-475 (1080)
134 TIGR00763 lon ATP-dependent pr 99.6 9.2E-15 2E-19 162.8 19.1 106 290-407 415-551 (775)
135 PRK05642 DNA replication initi 99.6 7.6E-14 1.6E-18 134.1 22.7 125 291-428 99-233 (234)
136 PRK11034 clpA ATP-dependent Cl 99.6 5.4E-15 1.2E-19 162.5 16.5 117 290-406 558-711 (758)
137 TIGR03345 VI_ClpV1 type VI sec 99.6 1.5E-14 3.2E-19 161.7 20.0 125 290-426 281-427 (852)
138 COG1220 HslU ATP-dependent pro 99.6 5.6E-15 1.2E-19 143.2 13.4 83 40-125 15-110 (444)
139 TIGR00362 DnaA chromosomal rep 99.6 4E-14 8.7E-19 146.9 20.6 127 290-430 200-337 (405)
140 PRK05342 clpX ATP-dependent pr 99.6 1.7E-14 3.6E-19 148.8 17.5 64 40-105 71-145 (412)
141 COG0542 clpA ATP-binding subun 99.6 4.4E-15 9.5E-20 160.4 13.6 216 38-405 489-749 (786)
142 PRK13531 regulatory ATPase Rav 99.6 7.2E-14 1.6E-18 144.5 19.1 129 291-430 109-283 (498)
143 TIGR03345 VI_ClpV1 type VI sec 99.6 2E-14 4.4E-19 160.6 16.3 117 290-406 669-826 (852)
144 PRK14087 dnaA chromosomal repl 99.6 1.8E-13 3.9E-18 143.2 22.4 128 290-430 207-348 (450)
145 PRK05818 DNA polymerase III su 99.6 1.6E-13 3.5E-18 131.6 19.6 116 290-434 89-215 (261)
146 TIGR02639 ClpA ATP-dependent C 99.6 3.2E-14 7E-19 157.7 16.8 117 290-406 554-707 (731)
147 KOG0651 26S proteasome regulat 99.6 6.4E-15 1.4E-19 141.5 9.3 174 38-236 130-312 (388)
148 PRK09087 hypothetical protein; 99.6 2.6E-13 5.7E-18 129.5 20.4 126 291-430 89-222 (226)
149 PRK14088 dnaA chromosomal repl 99.6 1.4E-13 2.9E-18 143.9 19.7 127 290-430 195-332 (440)
150 PRK12422 chromosomal replicati 99.6 2.7E-13 5.9E-18 141.4 22.0 127 290-430 203-343 (445)
151 PRK07276 DNA polymerase III su 99.6 2.6E-13 5.6E-18 133.2 19.0 94 290-404 105-199 (290)
152 PRK10787 DNA-binding ATP-depen 99.5 2.7E-13 5.8E-18 150.2 20.1 127 290-428 417-580 (784)
153 PRK14086 dnaA chromosomal repl 99.5 6E-13 1.3E-17 141.5 21.6 131 290-431 378-516 (617)
154 PRK05917 DNA polymerase III su 99.5 7.1E-13 1.5E-17 129.8 20.4 80 290-397 96-176 (290)
155 TIGR03015 pepcterm_ATPase puta 99.5 5.6E-12 1.2E-16 123.3 26.9 134 290-430 124-266 (269)
156 CHL00095 clpC Clp protease ATP 99.5 1.5E-13 3.3E-18 154.0 17.8 117 290-406 612-777 (821)
157 TIGR02442 Cob-chelat-sub cobal 99.5 2.6E-13 5.6E-18 147.9 18.6 136 290-435 127-309 (633)
158 KOG1514 Origin recognition com 99.5 7.8E-13 1.7E-17 139.1 21.2 154 287-454 506-681 (767)
159 TIGR00382 clpX endopeptidase C 99.5 2.2E-13 4.7E-18 139.9 16.7 66 342-407 300-381 (413)
160 PF00308 Bac_DnaA: Bacterial d 99.5 3.6E-13 7.7E-18 128.1 16.7 109 290-411 98-217 (219)
161 PF03215 Rad17: Rad17 cell cyc 99.5 5.6E-13 1.2E-17 140.9 19.1 67 26-93 6-72 (519)
162 KOG0743 AAA+-type ATPase [Post 99.5 9.8E-14 2.1E-18 140.2 12.4 162 25-214 185-363 (457)
163 COG0466 Lon ATP-dependent Lon 99.5 4.5E-13 9.8E-18 141.4 17.6 105 290-406 418-553 (782)
164 TIGR02640 gas_vesic_GvpN gas v 99.5 1.2E-12 2.6E-17 127.9 19.4 126 290-430 106-257 (262)
165 KOG0742 AAA+-type ATPase [Post 99.5 1.1E-12 2.4E-17 130.0 19.0 119 21-144 337-458 (630)
166 COG0593 DnaA ATPase involved i 99.5 2.1E-12 4.5E-17 131.4 21.1 129 290-433 176-316 (408)
167 TIGR03346 chaperone_ClpB ATP-d 99.5 7.5E-13 1.6E-17 148.9 19.2 118 290-407 668-822 (852)
168 TIGR03346 chaperone_ClpB ATP-d 99.5 2.9E-13 6.3E-18 152.2 15.7 111 290-412 267-398 (852)
169 COG1219 ClpX ATP-dependent pro 99.5 2E-13 4.4E-18 131.6 11.1 102 40-143 61-176 (408)
170 PRK11034 clpA ATP-dependent Cl 99.5 2.7E-12 5.8E-17 141.4 19.2 129 290-430 279-433 (758)
171 PRK10865 protein disaggregatio 99.4 1.1E-12 2.4E-17 147.1 16.0 110 290-411 272-402 (857)
172 COG0714 MoxR-like ATPases [Gen 99.4 1.1E-11 2.3E-16 125.3 21.3 140 291-436 114-302 (329)
173 PRK10865 protein disaggregatio 99.4 4.7E-12 1E-16 142.1 19.6 117 290-406 671-824 (857)
174 PRK08699 DNA polymerase III su 99.4 3.6E-12 7.7E-17 127.9 15.1 88 266-370 95-183 (325)
175 PRK07132 DNA polymerase III su 99.4 1.2E-11 2.5E-16 122.5 18.4 94 290-403 91-185 (299)
176 CHL00095 clpC Clp protease ATP 99.4 1.1E-11 2.4E-16 139.2 20.4 112 290-413 272-404 (821)
177 TIGR02031 BchD-ChlD magnesium 99.4 1.7E-11 3.7E-16 132.4 20.5 138 290-435 85-263 (589)
178 KOG2004 Mitochondrial ATP-depe 99.4 8.8E-12 1.9E-16 131.2 17.3 103 290-404 506-639 (906)
179 PF00004 AAA: ATPase family as 99.4 5E-12 1.1E-16 109.4 11.5 125 69-214 1-126 (132)
180 smart00350 MCM minichromosome 99.4 6.1E-11 1.3E-15 126.4 21.8 143 290-432 301-506 (509)
181 KOG0735 AAA+-type ATPase [Post 99.4 2.2E-10 4.7E-15 120.7 24.9 191 40-255 408-609 (952)
182 TIGR00764 lon_rel lon-related 99.4 4.8E-11 1E-15 129.2 20.7 132 290-431 218-392 (608)
183 KOG1970 Checkpoint RAD17-RFC c 99.4 1.3E-11 2.9E-16 126.7 15.1 113 290-407 195-320 (634)
184 COG1239 ChlI Mg-chelatase subu 99.3 4.3E-11 9.3E-16 120.6 17.2 135 290-435 145-327 (423)
185 COG1221 PspF Transcriptional r 99.3 1.3E-11 2.8E-16 125.3 13.6 111 290-411 174-310 (403)
186 TIGR00368 Mg chelatase-related 99.3 2.4E-11 5.3E-16 128.2 16.2 140 290-429 296-498 (499)
187 TIGR01817 nifA Nif-specific re 99.3 3.8E-11 8.2E-16 129.0 17.9 127 290-424 291-439 (534)
188 KOG2227 Pre-initiation complex 99.3 3.9E-11 8.4E-16 121.5 16.7 131 290-430 257-415 (529)
189 TIGR02974 phageshock_pspF psp 99.3 6.4E-11 1.4E-15 119.4 17.4 116 290-410 94-233 (329)
190 KOG0744 AAA+-type ATPase [Post 99.3 4E-11 8.8E-16 116.1 14.2 107 38-144 140-265 (423)
191 COG3829 RocR Transcriptional r 99.3 3.2E-11 6.9E-16 124.6 14.1 161 290-457 341-534 (560)
192 TIGR01650 PD_CobS cobaltochela 99.3 9.9E-10 2.1E-14 109.1 21.8 99 290-391 135-252 (327)
193 COG0606 Predicted ATPase with 99.3 7.3E-11 1.6E-15 120.5 14.1 139 290-430 284-485 (490)
194 COG0464 SpoVK ATPases of the A 99.3 1.4E-09 3.1E-14 115.8 24.7 319 62-429 14-482 (494)
195 COG0542 clpA ATP-binding subun 99.3 7.3E-11 1.6E-15 128.0 14.8 146 271-427 249-410 (786)
196 PRK13406 bchD magnesium chelat 99.3 1E-10 2.2E-15 125.4 15.8 138 290-435 94-255 (584)
197 PF05673 DUF815: Protein of un 99.2 5.4E-10 1.2E-14 106.0 18.6 51 40-91 27-77 (249)
198 PF05621 TniB: Bacterial TniB 99.2 1.2E-09 2.6E-14 106.8 21.4 128 290-427 146-286 (302)
199 PRK15424 propionate catabolism 99.2 5.1E-10 1.1E-14 119.0 19.1 130 290-424 323-479 (538)
200 KOG0745 Putative ATP-dependent 99.2 1E-10 2.2E-15 117.2 12.8 74 67-142 227-304 (564)
201 COG2204 AtoC Response regulato 99.2 3.3E-10 7.2E-15 117.1 16.8 127 290-424 236-385 (464)
202 TIGR02329 propionate_PrpR prop 99.2 4.1E-10 9E-15 119.8 18.0 163 290-457 308-504 (526)
203 smart00763 AAA_PrkA PrkA AAA d 99.2 5.3E-11 1.1E-15 119.4 10.4 87 38-124 48-146 (361)
204 PRK09862 putative ATP-dependen 99.2 6.6E-10 1.4E-14 117.0 18.1 141 290-430 295-492 (506)
205 PRK11608 pspF phage shock prot 99.2 7.2E-10 1.6E-14 111.7 17.2 116 290-410 101-240 (326)
206 PRK05022 anaerobic nitric oxid 99.2 8.5E-10 1.8E-14 117.8 18.5 117 290-411 282-421 (509)
207 PRK11388 DNA-binding transcrip 99.2 4.8E-10 1E-14 123.1 16.8 129 290-426 417-567 (638)
208 COG3604 FhlA Transcriptional r 99.2 7.6E-10 1.6E-14 113.2 16.7 116 290-410 318-456 (550)
209 PF01078 Mg_chelatase: Magnesi 99.2 1.1E-10 2.4E-15 108.4 9.7 46 39-91 2-47 (206)
210 PRK13765 ATP-dependent proteas 99.2 1.9E-09 4.2E-14 116.6 20.6 128 290-427 227-397 (637)
211 PRK10820 DNA-binding transcrip 99.2 1.1E-09 2.4E-14 117.1 17.6 126 290-423 299-447 (520)
212 PRK08485 DNA polymerase III su 99.1 5.1E-10 1.1E-14 102.7 12.4 122 266-409 39-174 (206)
213 PRK14700 recombination factor 99.1 3E-10 6.5E-15 110.6 9.9 102 326-428 5-113 (300)
214 PF07726 AAA_3: ATPase family 99.1 3.3E-10 7.1E-15 97.1 8.5 57 290-352 63-130 (131)
215 KOG0736 Peroxisome assembly fa 99.1 2.9E-08 6.3E-13 105.9 22.7 76 67-147 432-508 (953)
216 PRK15429 formate hydrogenlyase 99.0 6.4E-09 1.4E-13 115.1 18.2 116 290-410 471-609 (686)
217 PHA02244 ATPase-like protein 99.0 1.4E-08 3E-13 102.2 18.7 73 290-363 181-265 (383)
218 PRK06581 DNA polymerase III su 99.0 2.3E-08 4.9E-13 94.5 17.9 121 266-407 71-192 (263)
219 cd00009 AAA The AAA+ (ATPases 99.0 9.4E-09 2E-13 89.4 14.2 58 290-358 85-151 (151)
220 PTZ00111 DNA replication licen 99.0 4.6E-08 1E-12 108.0 21.0 142 290-432 558-806 (915)
221 COG2607 Predicted ATPase (AAA+ 98.9 1.2E-07 2.6E-12 88.9 19.6 116 290-406 140-277 (287)
222 TIGR02915 PEP_resp_reg putativ 98.9 3.4E-08 7.3E-13 103.8 17.8 126 290-423 234-382 (445)
223 PF00158 Sigma54_activat: Sigm 98.9 9.9E-09 2.2E-13 93.5 11.5 60 42-104 1-61 (168)
224 PF07728 AAA_5: AAA domain (dy 98.9 4.7E-09 1E-13 92.2 8.9 34 68-103 1-34 (139)
225 PRK10923 glnG nitrogen regulat 98.9 3E-08 6.5E-13 104.9 16.7 127 290-424 233-382 (469)
226 TIGR01818 ntrC nitrogen regula 98.9 3.6E-08 7.9E-13 104.1 16.8 127 290-424 229-378 (463)
227 PRK15115 response regulator Gl 98.9 1.1E-07 2.3E-12 100.0 20.0 159 290-456 229-411 (444)
228 PF01637 Arch_ATPase: Archaeal 98.9 2.3E-08 5E-13 94.7 13.1 102 290-400 119-232 (234)
229 PF07724 AAA_2: AAA domain (Cd 98.9 3.8E-09 8.2E-14 96.5 6.6 41 65-105 2-44 (171)
230 KOG1968 Replication factor C, 98.9 1.4E-08 3.1E-13 112.6 12.0 150 290-452 429-594 (871)
231 PRK11361 acetoacetate metaboli 98.8 1.5E-07 3.2E-12 99.2 18.4 159 290-456 238-430 (457)
232 COG3267 ExeA Type II secretory 98.7 1.8E-06 3.9E-11 82.0 20.5 138 274-424 119-267 (269)
233 KOG1051 Chaperone HSP104 and r 98.7 1.1E-07 2.3E-12 105.0 13.6 51 40-90 562-615 (898)
234 PRK11331 5-methylcytosine-spec 98.7 3.1E-07 6.6E-12 94.9 15.7 47 39-92 174-220 (459)
235 PRK10365 transcriptional regul 98.6 8E-07 1.7E-11 93.2 16.6 159 290-456 234-418 (441)
236 COG3283 TyrR Transcriptional r 98.6 9.4E-07 2E-11 87.3 14.6 117 290-411 294-433 (511)
237 KOG0478 DNA replication licens 98.5 4.8E-06 1E-10 88.2 18.0 141 290-430 527-724 (804)
238 PF00493 MCM: MCM2/3/5 family 98.5 9.1E-08 2E-12 96.7 5.2 143 290-432 122-328 (331)
239 COG1241 MCM2 Predicted ATPase 98.5 2.1E-06 4.6E-11 92.9 15.2 143 290-434 384-596 (682)
240 PRK12377 putative replication 98.5 2.2E-06 4.7E-11 82.9 13.5 60 28-91 63-126 (248)
241 PF14532 Sigma54_activ_2: Sigm 98.5 4.5E-07 9.7E-12 79.8 7.6 46 43-91 1-46 (138)
242 COG3284 AcoR Transcriptional a 98.4 1.5E-06 3.4E-11 91.8 12.0 116 290-411 408-541 (606)
243 KOG0482 DNA replication licens 98.4 9.3E-06 2E-10 83.4 17.0 140 290-432 440-640 (721)
244 PF13401 AAA_22: AAA domain; P 98.4 1.3E-06 2.9E-11 75.3 9.6 26 66-91 4-29 (131)
245 PRK08116 hypothetical protein; 98.4 1.7E-06 3.6E-11 84.9 11.4 44 48-91 96-139 (268)
246 KOG2170 ATPase of the AAA+ sup 98.4 7.8E-06 1.7E-10 79.3 15.0 145 267-431 160-320 (344)
247 PF13173 AAA_14: AAA domain 98.4 9.7E-07 2.1E-11 76.6 7.1 65 290-364 62-127 (128)
248 PF13191 AAA_16: AAA ATPase do 98.3 1.9E-06 4.1E-11 78.9 8.7 49 42-92 2-50 (185)
249 COG1222 RPT1 ATP-dependent 26S 98.3 1.3E-05 2.9E-10 79.5 14.8 130 290-432 245-394 (406)
250 PF00931 NB-ARC: NB-ARC domain 98.3 7.2E-06 1.6E-10 80.8 12.9 100 290-406 102-205 (287)
251 smart00382 AAA ATPases associa 98.3 2.5E-06 5.4E-11 73.1 8.1 74 66-142 2-91 (148)
252 COG5271 MDN1 AAA ATPase contai 98.2 2.8E-05 6.1E-10 88.8 16.5 99 292-400 958-1070(4600)
253 PRK07952 DNA replication prote 98.2 4.7E-06 1E-10 80.4 8.8 113 23-141 56-174 (244)
254 PHA00729 NTP-binding motif con 98.2 8.7E-06 1.9E-10 77.1 9.7 31 341-371 109-139 (226)
255 PRK06921 hypothetical protein; 98.2 3.2E-05 6.9E-10 75.8 14.0 26 66-91 117-142 (266)
256 TIGR01128 holA DNA polymerase 98.1 2.4E-05 5.2E-10 77.7 12.3 126 290-428 47-176 (302)
257 KOG0741 AAA+-type ATPase [Post 98.1 0.00013 2.8E-09 75.7 17.3 44 56-101 527-571 (744)
258 PF06309 Torsin: Torsin; Inte 98.0 9.2E-06 2E-10 69.7 5.8 51 40-90 25-77 (127)
259 PRK06526 transposase; Provisio 98.0 1.4E-05 3.1E-10 77.6 7.4 25 66-90 98-122 (254)
260 KOG2543 Origin recognition com 98.0 0.00028 6E-09 70.8 15.9 63 40-106 6-68 (438)
261 KOG0480 DNA replication licens 98.0 0.00037 8.1E-09 73.8 17.5 136 290-430 443-643 (764)
262 COG5271 MDN1 AAA ATPase contai 97.9 4.9E-05 1.1E-09 87.0 10.4 77 290-371 1612-1702(4600)
263 PRK08939 primosomal protein Dn 97.9 1.6E-05 3.5E-10 79.3 6.1 26 66-91 156-181 (306)
264 COG1618 Predicted nucleotide k 97.9 0.00032 6.8E-09 62.5 13.3 26 67-92 6-31 (179)
265 PRK10536 hypothetical protein; 97.9 0.00016 3.4E-09 69.8 12.4 46 37-89 52-97 (262)
266 PF05729 NACHT: NACHT domain 97.9 0.00019 4.1E-09 64.1 11.8 26 67-92 1-26 (166)
267 PF07693 KAP_NTPase: KAP famil 97.8 0.0025 5.5E-08 63.9 20.7 86 290-375 173-266 (325)
268 TIGR03600 phage_DnaB phage rep 97.8 0.0002 4.3E-09 74.9 12.6 66 57-126 185-250 (421)
269 PRK15455 PrkA family serine pr 97.8 3.8E-05 8.3E-10 81.4 7.0 64 37-101 73-137 (644)
270 PHA02624 large T antigen; Prov 97.8 0.00021 4.5E-09 76.3 12.4 41 51-91 416-456 (647)
271 PF12775 AAA_7: P-loop contain 97.8 0.00023 5E-09 69.9 12.0 33 342-374 163-195 (272)
272 PRK04841 transcriptional regul 97.8 0.002 4.3E-08 73.8 21.3 98 290-404 122-226 (903)
273 PRK06321 replicative DNA helic 97.7 0.00036 7.7E-09 73.8 13.0 66 56-125 216-281 (472)
274 PRK05636 replicative DNA helic 97.7 0.00017 3.6E-09 76.9 10.4 66 57-126 256-321 (505)
275 PRK08760 replicative DNA helic 97.7 0.00024 5.1E-09 75.4 11.4 65 57-125 220-284 (476)
276 TIGR02688 conserved hypothetic 97.7 0.005 1.1E-07 63.5 20.2 88 346-437 337-440 (449)
277 PRK09165 replicative DNA helic 97.7 0.00034 7.4E-09 74.6 12.3 70 57-126 208-287 (497)
278 PRK08181 transposase; Validate 97.7 0.0001 2.2E-09 72.2 7.6 71 66-141 106-179 (269)
279 PRK08506 replicative DNA helic 97.7 0.0005 1.1E-08 72.9 12.8 65 57-126 183-247 (472)
280 PF03796 DnaB_C: DnaB-like hel 97.7 0.00063 1.4E-08 66.3 12.6 67 56-126 9-75 (259)
281 PF14516 AAA_35: AAA-like doma 97.6 0.0076 1.7E-07 61.0 20.6 48 352-405 194-241 (331)
282 KOG0477 DNA replication licens 97.6 0.0061 1.3E-07 64.7 19.8 49 40-90 449-506 (854)
283 PRK08006 replicative DNA helic 97.6 0.00044 9.6E-09 73.1 11.4 67 56-126 214-280 (471)
284 PRK07004 replicative DNA helic 97.6 0.0004 8.7E-09 73.3 10.9 64 58-125 205-268 (460)
285 PF12774 AAA_6: Hydrolytic ATP 97.6 0.00096 2.1E-08 63.9 12.5 35 67-103 33-67 (231)
286 PF13207 AAA_17: AAA domain; P 97.6 6E-05 1.3E-09 64.2 3.8 23 69-91 2-24 (121)
287 PRK05748 replicative DNA helic 97.6 0.00068 1.5E-08 71.5 12.3 64 57-124 194-257 (448)
288 PRK06749 replicative DNA helic 97.6 0.00071 1.5E-08 70.8 12.2 65 56-125 176-240 (428)
289 TIGR00665 DnaB replicative DNA 97.6 0.00069 1.5E-08 71.1 12.3 66 57-126 186-251 (434)
290 KOG0479 DNA replication licens 97.6 0.0049 1.1E-07 64.9 17.8 81 376-456 573-671 (818)
291 PRK06904 replicative DNA helic 97.6 0.00073 1.6E-08 71.5 12.2 66 57-126 212-277 (472)
292 PRK05595 replicative DNA helic 97.5 0.00051 1.1E-08 72.3 10.6 66 57-126 192-257 (444)
293 COG4650 RtcR Sigma54-dependent 97.5 0.00058 1.3E-08 66.2 9.9 132 290-427 283-440 (531)
294 PLN03210 Resistant to P. syrin 97.5 0.0026 5.5E-08 74.9 17.4 54 35-91 179-232 (1153)
295 PRK08840 replicative DNA helic 97.5 0.00088 1.9E-08 70.8 12.0 66 56-125 207-272 (464)
296 PF08298 AAA_PrkA: PrkA AAA do 97.5 0.0039 8.4E-08 62.7 15.9 62 40-102 61-123 (358)
297 PRK08118 topology modulation p 97.5 0.00028 6.2E-09 64.1 6.9 32 67-100 2-33 (167)
298 COG1373 Predicted ATPase (AAA+ 97.5 0.0069 1.5E-07 62.9 17.8 144 290-448 95-266 (398)
299 PRK00131 aroK shikimate kinase 97.4 0.00015 3.2E-09 65.6 4.6 31 65-97 3-33 (175)
300 PF03969 AFG1_ATPase: AFG1-lik 97.4 0.0021 4.5E-08 65.7 12.9 28 64-91 60-87 (362)
301 PRK04296 thymidine kinase; Pro 97.4 0.0012 2.7E-08 61.2 10.0 24 67-90 3-26 (190)
302 PRK06835 DNA replication prote 97.4 0.00025 5.3E-09 71.6 5.7 26 66-91 183-208 (329)
303 PRK05973 replicative DNA helic 97.4 0.00036 7.8E-09 67.0 6.5 59 57-120 55-113 (237)
304 PLN00020 ribulose bisphosphate 97.4 0.02 4.3E-07 58.2 18.9 113 260-391 187-328 (413)
305 COG0305 DnaB Replicative DNA h 97.3 0.00074 1.6E-08 69.9 8.8 67 56-126 186-252 (435)
306 KOG3347 Predicted nucleotide k 97.3 0.00021 4.6E-09 62.6 3.7 30 66-97 7-36 (176)
307 PRK05574 holA DNA polymerase I 97.3 0.0024 5.1E-08 64.6 12.0 124 290-428 77-211 (340)
308 PRK07452 DNA polymerase III su 97.3 0.0022 4.8E-08 64.6 11.7 129 290-428 62-197 (326)
309 PF01695 IstB_IS21: IstB-like 97.3 0.00031 6.7E-09 64.6 5.0 26 66-91 47-72 (178)
310 KOG0481 DNA replication licens 97.3 0.0077 1.7E-07 62.6 15.2 144 290-435 429-644 (729)
311 KOG0728 26S proteasome regulat 97.3 0.0026 5.6E-08 60.5 10.9 132 290-434 241-392 (404)
312 COG1484 DnaC DNA replication p 97.3 0.00038 8.2E-09 67.7 5.3 27 65-91 104-130 (254)
313 PF13604 AAA_30: AAA domain; P 97.3 0.0025 5.4E-08 59.5 10.6 34 290-323 94-127 (196)
314 PRK09183 transposase/IS protei 97.2 0.00031 6.8E-09 68.5 4.6 25 66-90 102-126 (259)
315 PRK04132 replication factor C 97.2 0.00014 3.1E-09 81.2 2.4 51 26-82 6-56 (846)
316 PTZ00202 tuzin; Provisional 97.2 0.008 1.7E-07 62.2 14.6 50 40-91 262-311 (550)
317 PRK13947 shikimate kinase; Pro 97.2 0.00033 7.1E-09 63.5 4.2 29 67-97 2-30 (171)
318 cd01128 rho_factor Transcripti 97.2 0.0018 3.8E-08 62.8 9.4 27 66-92 16-42 (249)
319 cd00984 DnaB_C DnaB helicase C 97.2 0.00079 1.7E-08 64.6 6.9 65 57-125 4-68 (242)
320 PRK06585 holA DNA polymerase I 97.2 0.051 1.1E-06 55.1 20.5 74 352-428 135-208 (343)
321 PRK00625 shikimate kinase; Pro 97.2 0.00035 7.6E-09 63.9 4.2 30 68-99 2-31 (173)
322 PRK09376 rho transcription ter 97.2 0.0015 3.3E-08 66.7 9.0 27 66-92 169-195 (416)
323 PRK03839 putative kinase; Prov 97.2 0.00037 8E-09 63.9 4.1 29 68-98 2-30 (180)
324 PRK07261 topology modulation p 97.2 0.00097 2.1E-08 60.9 6.7 31 68-100 2-32 (171)
325 PF13671 AAA_33: AAA domain; P 97.2 0.00031 6.6E-09 61.5 3.3 23 69-91 2-24 (143)
326 PRK14532 adenylate kinase; Pro 97.2 0.00035 7.5E-09 64.5 3.8 37 68-108 2-38 (188)
327 PRK07773 replicative DNA helic 97.1 0.0022 4.8E-08 73.2 10.7 64 59-126 210-273 (886)
328 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00031 6.7E-09 64.4 3.1 34 69-106 2-35 (183)
329 PRK13833 conjugal transfer pro 97.1 0.0011 2.4E-08 66.5 7.2 72 66-140 144-226 (323)
330 KOG0734 AAA+-type ATPase conta 97.1 0.0026 5.7E-08 66.4 9.7 125 290-428 397-539 (752)
331 PRK13900 type IV secretion sys 97.1 0.0012 2.5E-08 66.9 7.1 73 65-140 159-246 (332)
332 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00099 2.1E-08 58.1 5.7 35 58-92 14-48 (133)
333 PRK14531 adenylate kinase; Pro 97.1 0.00047 1E-08 63.6 3.8 39 67-109 3-41 (183)
334 PLN02674 adenylate kinase 97.1 0.00076 1.7E-08 65.0 5.2 40 66-109 31-70 (244)
335 PF05970 PIF1: PIF1-like helic 97.1 0.0018 3.8E-08 66.5 8.2 44 46-91 4-47 (364)
336 cd00464 SK Shikimate kinase (S 97.1 0.00058 1.2E-08 60.6 4.1 28 68-97 1-28 (154)
337 PRK11823 DNA repair protein Ra 97.1 0.0032 7E-08 66.3 10.3 32 59-90 73-104 (446)
338 COG2805 PilT Tfp pilus assembl 97.0 0.0009 1.9E-08 65.4 5.4 112 17-141 84-210 (353)
339 PRK13949 shikimate kinase; Pro 97.0 0.00061 1.3E-08 62.1 4.2 30 67-98 2-31 (169)
340 TIGR00767 rho transcription te 97.0 0.0042 9.2E-08 63.7 10.5 28 65-92 167-194 (415)
341 PF00437 T2SE: Type II/IV secr 97.0 0.0011 2.4E-08 64.9 6.2 96 40-141 104-209 (270)
342 PRK14530 adenylate kinase; Pro 97.0 0.00069 1.5E-08 64.1 4.4 29 67-97 4-32 (215)
343 PRK06547 hypothetical protein; 97.0 0.0011 2.5E-08 60.5 5.7 30 66-97 15-44 (172)
344 COG1102 Cmk Cytidylate kinase 97.0 0.00061 1.3E-08 60.7 3.7 27 69-97 3-29 (179)
345 cd00227 CPT Chloramphenicol (C 97.0 0.0006 1.3E-08 62.3 3.7 26 66-91 2-27 (175)
346 PF00910 RNA_helicase: RNA hel 97.0 0.00048 1E-08 57.7 2.8 23 69-91 1-23 (107)
347 cd01130 VirB11-like_ATPase Typ 97.0 0.0023 4.9E-08 59.2 7.6 73 65-140 24-111 (186)
348 COG0703 AroK Shikimate kinase 97.0 0.00065 1.4E-08 61.6 3.7 29 67-97 3-31 (172)
349 TIGR02868 CydC thiol reductant 97.0 0.016 3.6E-07 62.3 15.2 36 56-91 351-386 (529)
350 PRK13894 conjugal transfer ATP 97.0 0.0012 2.7E-08 66.3 6.0 72 66-140 148-230 (319)
351 cd01121 Sms Sms (bacterial rad 97.0 0.0046 1E-07 63.4 10.2 33 59-91 75-107 (372)
352 PF12780 AAA_8: P-loop contain 97.0 0.069 1.5E-06 52.3 18.0 48 41-91 9-56 (268)
353 PRK05629 hypothetical protein; 97.0 0.0098 2.1E-07 59.8 12.4 124 290-427 65-189 (318)
354 PHA02542 41 41 helicase; Provi 97.0 0.0016 3.4E-08 69.0 6.8 65 57-126 180-245 (473)
355 COG4178 ABC-type uncharacteriz 97.0 0.011 2.4E-07 63.6 13.1 38 290-327 534-573 (604)
356 PRK13851 type IV secretion sys 96.9 0.0017 3.7E-08 65.8 6.8 73 65-140 161-247 (344)
357 TIGR02782 TrbB_P P-type conjug 96.9 0.0012 2.5E-08 65.9 5.4 72 66-140 132-215 (299)
358 PF05872 DUF853: Bacterial pro 96.9 0.0063 1.4E-07 62.8 10.6 74 281-366 247-329 (502)
359 TIGR03689 pup_AAA proteasome A 96.9 0.012 2.6E-07 62.7 13.2 73 290-374 290-380 (512)
360 cd01428 ADK Adenylate kinase ( 96.9 0.00084 1.8E-08 62.0 4.0 34 69-106 2-35 (194)
361 COG3899 Predicted ATPase [Gene 96.9 0.048 1E-06 62.0 18.6 104 290-408 155-266 (849)
362 PRK06217 hypothetical protein; 96.9 0.00099 2.1E-08 61.4 4.4 30 67-98 2-31 (183)
363 COG3854 SpoIIIAA ncharacterize 96.9 0.0043 9.4E-08 58.5 8.5 27 67-93 138-164 (308)
364 PF09848 DUF2075: Uncharacteri 96.9 0.0039 8.5E-08 63.6 9.0 24 67-90 2-25 (352)
365 cd02020 CMPK Cytidine monophos 96.9 0.00099 2.1E-08 58.4 4.0 29 69-99 2-30 (147)
366 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0014 3E-08 63.1 5.2 53 59-117 14-67 (237)
367 PRK13948 shikimate kinase; Pro 96.9 0.0013 2.7E-08 60.8 4.7 31 65-97 9-39 (182)
368 PF13238 AAA_18: AAA domain; P 96.9 0.00079 1.7E-08 57.4 3.1 22 69-90 1-22 (129)
369 PF13245 AAA_19: Part of AAA d 96.8 0.0011 2.5E-08 51.9 3.6 24 67-90 11-35 (76)
370 PRK06696 uridine kinase; Valid 96.8 0.0026 5.7E-08 60.5 6.8 40 66-105 22-62 (223)
371 PRK13946 shikimate kinase; Pro 96.8 0.0012 2.7E-08 60.9 4.3 30 66-97 10-39 (184)
372 TIGR01351 adk adenylate kinase 96.8 0.0011 2.3E-08 62.6 3.9 36 69-108 2-37 (210)
373 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.0019 4.2E-08 63.0 5.8 57 60-122 30-87 (259)
374 PRK08154 anaerobic benzoate ca 96.8 0.0023 5.1E-08 64.1 6.5 32 64-97 131-162 (309)
375 KOG0727 26S proteasome regulat 96.8 0.019 4.2E-07 54.8 12.1 126 290-428 249-394 (408)
376 PRK06762 hypothetical protein; 96.8 0.0013 2.8E-08 59.4 4.1 25 67-91 3-27 (166)
377 cd01131 PilT Pilus retraction 96.8 0.0029 6.2E-08 59.2 6.6 70 67-139 2-84 (198)
378 PRK07914 hypothetical protein; 96.8 0.018 3.8E-07 58.0 12.7 125 290-428 65-192 (320)
379 PTZ00088 adenylate kinase 1; P 96.8 0.0012 2.5E-08 63.3 3.8 39 67-109 7-45 (229)
380 PLN02200 adenylate kinase fami 96.8 0.0012 2.6E-08 63.4 4.0 36 66-105 43-78 (234)
381 TIGR02237 recomb_radB DNA repa 96.8 0.0013 2.8E-08 61.7 4.1 32 59-90 5-36 (209)
382 PRK03731 aroL shikimate kinase 96.8 0.0014 3.1E-08 59.4 4.2 29 67-97 3-31 (171)
383 PRK00279 adk adenylate kinase; 96.8 0.0013 2.8E-08 62.2 4.1 37 68-108 2-38 (215)
384 PRK14528 adenylate kinase; Pro 96.8 0.0015 3.1E-08 60.5 4.3 25 67-91 2-26 (186)
385 COG2909 MalT ATP-dependent tra 96.8 0.22 4.7E-06 55.3 21.2 112 273-404 117-234 (894)
386 cd02021 GntK Gluconate kinase 96.8 0.0014 3E-08 58.1 3.9 23 69-91 2-24 (150)
387 TIGR01313 therm_gnt_kin carboh 96.7 0.0012 2.6E-08 59.4 3.5 23 69-91 1-23 (163)
388 COG1066 Sms Predicted ATP-depe 96.7 0.017 3.8E-07 58.8 11.9 43 59-101 86-128 (456)
389 PF10236 DAP3: Mitochondrial r 96.7 0.071 1.5E-06 53.4 16.4 48 353-401 258-308 (309)
390 COG0563 Adk Adenylate kinase a 96.7 0.0016 3.5E-08 59.9 4.2 24 68-91 2-25 (178)
391 KOG2228 Origin recognition com 96.7 0.023 5E-07 56.5 12.3 73 290-372 138-219 (408)
392 cd02019 NK Nucleoside/nucleoti 96.7 0.0015 3.2E-08 50.2 3.3 22 69-90 2-23 (69)
393 PF00406 ADK: Adenylate kinase 96.7 0.00071 1.5E-08 60.2 1.8 35 71-109 1-35 (151)
394 COG1936 Predicted nucleotide k 96.7 0.0014 3.1E-08 59.1 3.5 24 68-92 2-25 (180)
395 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0017 3.8E-08 59.5 4.3 25 67-91 4-28 (188)
396 PRK05057 aroK shikimate kinase 96.7 0.0019 4E-08 59.1 4.4 30 66-97 4-33 (172)
397 COG1067 LonB Predicted ATP-dep 96.7 0.019 4.2E-07 62.7 12.6 130 290-429 226-398 (647)
398 TIGR02768 TraA_Ti Ti-type conj 96.7 0.013 2.9E-07 65.6 11.7 25 67-91 369-393 (744)
399 PRK14526 adenylate kinase; Pro 96.6 0.0017 3.8E-08 61.3 3.9 37 68-108 2-38 (211)
400 PRK11174 cysteine/glutathione 96.6 0.041 8.9E-07 60.1 15.1 34 57-90 367-400 (588)
401 PF06745 KaiC: KaiC; InterPro 96.6 0.0025 5.5E-08 60.6 5.0 30 59-88 12-41 (226)
402 cd01394 radB RadB. The archaea 96.6 0.0019 4.1E-08 61.1 4.1 33 59-91 12-44 (218)
403 COG1125 OpuBA ABC-type proline 96.6 0.017 3.6E-07 55.5 10.3 40 64-103 25-64 (309)
404 KOG1808 AAA ATPase containing 96.6 0.0097 2.1E-07 70.9 10.6 84 291-375 509-602 (1856)
405 TIGR01420 pilT_fam pilus retra 96.6 0.004 8.6E-08 63.4 6.7 72 66-140 122-206 (343)
406 COG3839 MalK ABC-type sugar tr 96.6 0.015 3.3E-07 58.5 10.6 27 65-91 28-54 (338)
407 COG4088 Predicted nucleotide k 96.6 0.0015 3.2E-08 60.6 3.1 27 67-93 2-28 (261)
408 PRK12608 transcription termina 96.6 0.012 2.6E-07 60.0 9.7 27 66-92 133-159 (380)
409 PRK14529 adenylate kinase; Pro 96.6 0.0021 4.5E-08 61.2 4.1 39 68-110 2-40 (223)
410 PRK02496 adk adenylate kinase; 96.6 0.0022 4.7E-08 59.0 4.1 24 68-91 3-26 (184)
411 PRK04040 adenylate kinase; Pro 96.6 0.0025 5.5E-08 59.1 4.5 26 66-91 2-27 (188)
412 PF01745 IPT: Isopentenyl tran 96.6 0.0026 5.6E-08 59.5 4.3 38 67-106 2-39 (233)
413 TIGR01448 recD_rel helicase, p 96.6 0.021 4.5E-07 63.8 12.2 25 67-91 339-363 (720)
414 TIGR02788 VirB11 P-type DNA tr 96.6 0.0054 1.2E-07 61.5 6.9 74 64-140 142-229 (308)
415 TIGR02525 plasmid_TraJ plasmid 96.5 0.0051 1.1E-07 63.1 6.6 72 67-141 150-237 (372)
416 cd01122 GP4d_helicase GP4d_hel 96.5 0.0029 6.2E-08 61.9 4.6 64 59-126 23-86 (271)
417 PRK13657 cyclic beta-1,2-gluca 96.5 0.058 1.3E-06 59.0 15.2 36 56-91 351-386 (588)
418 PRK14527 adenylate kinase; Pro 96.5 0.0023 5.1E-08 59.3 3.8 26 66-91 6-31 (191)
419 COG0467 RAD55 RecA-superfamily 96.5 0.0035 7.5E-08 61.1 5.1 33 59-91 16-48 (260)
420 TIGR01193 bacteriocin_ABC ABC- 96.5 0.065 1.4E-06 59.9 15.9 36 56-91 490-525 (708)
421 PLN02459 probable adenylate ki 96.5 0.0024 5.2E-08 62.0 3.8 40 67-110 30-69 (261)
422 PRK09361 radB DNA repair and r 96.5 0.0027 5.9E-08 60.3 4.2 32 59-90 16-47 (225)
423 TIGR02012 tigrfam_recA protein 96.5 0.0038 8.2E-08 62.6 5.3 30 61-90 50-79 (321)
424 PF03266 NTPase_1: NTPase; In 96.5 0.0023 4.9E-08 58.3 3.4 23 68-90 1-23 (168)
425 PRK05541 adenylylsulfate kinas 96.5 0.0027 5.8E-08 58.0 3.9 27 65-91 6-32 (176)
426 COG2842 Uncharacterized ATPase 96.5 0.16 3.5E-06 49.9 16.2 121 290-420 166-289 (297)
427 PRK05907 hypothetical protein; 96.5 0.041 8.9E-07 55.1 12.6 124 290-428 70-201 (311)
428 cd01124 KaiC KaiC is a circadi 96.5 0.0032 6.8E-08 57.7 4.3 45 69-118 2-46 (187)
429 cd01129 PulE-GspE PulE/GspE Th 96.5 0.012 2.5E-07 57.7 8.5 72 67-141 81-161 (264)
430 PF10923 DUF2791: P-loop Domai 96.4 0.64 1.4E-05 48.3 21.4 45 43-89 28-72 (416)
431 PRK08487 DNA polymerase III su 96.4 0.044 9.6E-07 55.3 12.9 120 290-428 72-198 (328)
432 PRK08233 hypothetical protein; 96.4 0.0029 6.3E-08 57.7 3.8 25 67-91 4-28 (182)
433 TIGR02322 phosphon_PhnN phosph 96.4 0.0028 6.1E-08 57.9 3.7 25 67-91 2-26 (179)
434 PRK04328 hypothetical protein; 96.4 0.0032 6.9E-08 61.1 4.2 31 59-89 16-46 (249)
435 PRK11176 lipid transporter ATP 96.4 0.1 2.2E-06 56.9 16.4 33 59-91 362-394 (582)
436 KOG1051 Chaperone HSP104 and r 96.4 0.028 6.1E-07 63.0 11.9 111 290-411 281-411 (898)
437 PF13086 AAA_11: AAA domain; P 96.4 0.0024 5.2E-08 60.1 3.2 23 68-90 19-41 (236)
438 TIGR03880 KaiC_arch_3 KaiC dom 96.4 0.0051 1.1E-07 58.5 5.4 53 59-117 9-62 (224)
439 TIGR00958 3a01208 Conjugate Tr 96.4 0.03 6.4E-07 62.7 12.2 35 57-91 498-532 (711)
440 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.0034 7.4E-08 59.8 4.1 31 59-89 13-43 (229)
441 TIGR02203 MsbA_lipidA lipid A 96.4 0.036 7.8E-07 60.2 12.6 30 62-91 354-383 (571)
442 TIGR01618 phage_P_loop phage n 96.4 0.0019 4.1E-08 61.3 2.2 22 66-87 12-33 (220)
443 PRK11160 cysteine/glutathione 96.4 0.067 1.5E-06 58.3 14.6 36 56-91 356-391 (574)
444 PHA02774 E1; Provisional 96.3 0.0053 1.1E-07 65.6 5.6 36 56-91 424-459 (613)
445 KOG0055 Multidrug/pheromone ex 96.3 0.019 4.2E-07 65.9 10.4 44 64-107 1014-1057(1228)
446 PRK00889 adenylylsulfate kinas 96.3 0.0036 7.8E-08 57.1 3.8 27 65-91 3-29 (175)
447 PRK04182 cytidylate kinase; Pr 96.3 0.0038 8.2E-08 56.7 4.0 28 68-97 2-29 (180)
448 COG2804 PulE Type II secretory 96.3 0.012 2.7E-07 61.5 8.1 74 65-141 257-339 (500)
449 TIGR03797 NHPM_micro_ABC2 NHPM 96.3 0.078 1.7E-06 59.1 15.1 35 57-91 470-504 (686)
450 TIGR02857 CydD thiol reductant 96.3 0.085 1.8E-06 56.8 14.9 36 56-91 338-373 (529)
451 PF00004 AAA: ATPase family as 96.3 0.0098 2.1E-07 50.8 6.2 55 290-356 59-130 (132)
452 TIGR03796 NHPM_micro_ABC1 NHPM 96.3 0.083 1.8E-06 59.1 15.1 30 62-91 501-530 (710)
453 PRK06067 flagellar accessory p 96.3 0.0043 9.3E-08 59.4 4.2 31 59-89 18-48 (234)
454 PF02367 UPF0079: Uncharacteri 96.3 0.0049 1.1E-07 53.0 4.0 30 64-93 13-42 (123)
455 PRK01184 hypothetical protein; 96.2 0.0046 9.9E-08 56.8 4.1 24 67-91 2-25 (184)
456 cd01120 RecA-like_NTPases RecA 96.2 0.0037 8E-08 55.2 3.1 23 69-91 2-24 (165)
457 cd03281 ABC_MSH5_euk MutS5 hom 96.2 0.038 8.3E-07 52.3 10.1 22 67-88 30-51 (213)
458 cd03283 ABC_MutS-like MutS-lik 96.2 0.017 3.8E-07 54.0 7.7 23 66-88 25-47 (199)
459 PRK10078 ribose 1,5-bisphospho 96.2 0.0039 8.3E-08 57.6 3.2 25 67-91 3-27 (186)
460 PRK13764 ATPase; Provisional 96.2 0.008 1.7E-07 65.1 6.1 27 66-92 257-283 (602)
461 TIGR03375 type_I_sec_LssB type 96.2 0.042 9E-07 61.3 12.0 33 59-91 484-516 (694)
462 TIGR02524 dot_icm_DotB Dot/Icm 96.2 0.0075 1.6E-07 61.6 5.5 27 65-91 133-159 (358)
463 cd00983 recA RecA is a bacter 96.2 0.0075 1.6E-07 60.6 5.3 30 61-90 50-79 (325)
464 TIGR02173 cyt_kin_arch cytidyl 96.2 0.0054 1.2E-07 55.3 4.0 24 68-91 2-25 (171)
465 PHA02530 pseT polynucleotide k 96.2 0.0041 8.9E-08 61.8 3.5 24 67-90 3-26 (300)
466 COG2274 SunT ABC-type bacterio 96.1 0.055 1.2E-06 60.1 12.5 35 57-91 490-524 (709)
467 PLN02199 shikimate kinase 96.1 0.0094 2E-07 58.8 5.8 31 65-97 101-131 (303)
468 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.0047 1E-07 59.0 3.6 32 59-90 12-43 (235)
469 PRK08533 flagellar accessory p 96.1 0.0057 1.2E-07 58.6 4.2 32 59-90 17-48 (230)
470 PRK13808 adenylate kinase; Pro 96.1 0.0099 2.1E-07 59.8 6.0 35 68-106 2-36 (333)
471 PF13521 AAA_28: AAA domain; P 96.1 0.0043 9.3E-08 55.8 3.0 26 69-97 2-27 (163)
472 KOG0058 Peptide exporter, ABC 96.1 0.046 1E-06 59.5 11.2 33 59-91 487-519 (716)
473 PRK10789 putative multidrug tr 96.1 0.16 3.6E-06 55.2 15.9 33 59-91 334-366 (569)
474 COG2074 2-phosphoglycerate kin 96.1 0.49 1.1E-05 45.5 16.7 27 66-92 89-115 (299)
475 COG0465 HflB ATP-dependent Zn 96.1 0.043 9.2E-07 59.2 10.8 128 290-430 243-390 (596)
476 TIGR01846 type_I_sec_HlyB type 96.1 0.17 3.7E-06 56.5 16.2 33 59-91 476-508 (694)
477 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.057 1.2E-06 48.6 10.1 56 277-351 87-146 (159)
478 PRK00300 gmk guanylate kinase; 96.1 0.0058 1.3E-07 57.1 3.9 27 65-91 4-30 (205)
479 TIGR02655 circ_KaiC circadian 96.1 0.0048 1E-07 65.8 3.6 30 59-88 14-43 (484)
480 PRK10436 hypothetical protein; 96.1 0.024 5.2E-07 59.8 8.8 74 65-141 217-299 (462)
481 KOG3928 Mitochondrial ribosome 96.1 0.32 6.9E-06 49.8 16.2 51 346-397 398-451 (461)
482 COG1855 ATPase (PilT family) [ 96.1 0.0078 1.7E-07 61.8 4.9 42 40-91 247-288 (604)
483 KOG0738 AAA+-type ATPase [Post 96.0 0.055 1.2E-06 54.9 10.6 149 290-452 305-489 (491)
484 PRK12339 2-phosphoglycerate ki 96.0 0.0063 1.4E-07 56.9 3.9 26 66-91 3-28 (197)
485 TIGR03574 selen_PSTK L-seryl-t 96.0 0.0048 1E-07 59.7 3.2 23 69-91 2-24 (249)
486 PRK07667 uridine kinase; Provi 96.0 0.015 3.3E-07 54.0 6.4 35 57-91 8-42 (193)
487 PRK05986 cob(I)alamin adenolsy 96.0 0.16 3.6E-06 47.0 13.0 26 65-90 21-46 (191)
488 PF06144 DNA_pol3_delta: DNA p 96.0 0.011 2.4E-07 53.4 5.4 108 290-406 58-170 (172)
489 COG1123 ATPase components of v 96.0 0.079 1.7E-06 56.4 12.3 32 60-91 311-342 (539)
490 TIGR03263 guanyl_kin guanylate 96.0 0.005 1.1E-07 56.2 3.0 25 67-91 2-26 (180)
491 cd01393 recA_like RecA is a b 96.0 0.0068 1.5E-07 57.5 4.0 32 59-90 12-43 (226)
492 TIGR02538 type_IV_pilB type IV 96.0 0.023 5.1E-07 61.6 8.6 72 67-141 317-397 (564)
493 PF00485 PRK: Phosphoribulokin 96.0 0.0054 1.2E-07 57.0 3.2 24 69-92 2-25 (194)
494 KOG0729 26S proteasome regulat 96.0 0.043 9.4E-07 52.9 9.2 126 290-428 271-416 (435)
495 PRK13889 conjugal transfer rel 96.0 0.039 8.4E-07 63.2 10.5 28 290-317 434-461 (988)
496 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.029 6.3E-07 49.5 7.6 75 63-140 23-99 (144)
497 KOG0056 Heavy metal exporter H 95.9 0.053 1.1E-06 56.5 10.2 31 63-93 561-591 (790)
498 PRK09825 idnK D-gluconate kina 95.9 0.0081 1.7E-07 55.1 4.0 27 65-91 2-28 (176)
499 PLN02165 adenylate isopentenyl 95.9 0.0097 2.1E-07 59.8 4.8 27 66-92 43-69 (334)
500 TIGR02533 type_II_gspE general 95.9 0.033 7.2E-07 59.3 8.9 72 67-141 243-323 (486)
No 1
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=100.00 E-value=9.7e-83 Score=600.05 Aligned_cols=450 Identities=81% Similarity=1.198 Sum_probs=442.4
Q ss_pred CCcccccccchhhHhhHhhhcccccCCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChH
Q 012326 1 MAELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKT 80 (466)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT 80 (466)
||++...++||.+|+.|+++||||+|+|+++...|++..++++||-.++++...++.+++.|+..++.+|+.|+||+|||
T Consensus 1 ~a~~~~~e~rDv~~veri~aHSHI~GlGldd~le~~~~s~GmVGQ~~AR~Aagvi~kmi~egkiaGraiLiaG~pgtGKt 80 (454)
T KOG2680|consen 1 MATLDLIEIRDVTRVERIGAHSHIRGLGLDDVLEPRYVSEGMVGQVKARKAAGVILKMIREGKIAGRAILIAGQPGTGKT 80 (454)
T ss_pred CcccccccccchhhhhhccchhhccccCCCcccCcccccccchhhHHHHHHhHHHHHHHHcCcccceEEEEecCCCCCce
Confidence 78999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEe
Q 012326 81 AIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTL 160 (466)
Q Consensus 81 ~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l 160 (466)
.+|..+++.++.+.||..+.+++++|+|+++++.+.|+|++++|+++++..-++.||+.++.+.|+.++.| .+.+++++
T Consensus 81 AiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEAltQAfRksiGvrIKEetevIEGEVVeiqidRp~tg~g-~k~GKlt~ 159 (454)
T KOG2680|consen 81 AIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEALTQAFRKSIGVRIKEETEVIEGEVVEIQIDRPATGMG-SKVGKLTL 159 (454)
T ss_pred eeeeehhhhhCCCCceeeeecceeeeecccHHHHHHHHHHHhhceEeeheeeeecceEEEEEeeccccCcC-cccceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877 88899999
Q ss_pred eeccchhHhhhhhHHHHHhhhcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcc
Q 012326 161 KTTEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVT 240 (466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~ 240 (466)
++.+++..|+++.++.+++.+++|..||+|.|+.++|++.++++...|.++||.+|....|++||+|++++|++.++.++
T Consensus 160 kTtdMEt~ydlG~Kmi~~l~KeKV~aGDVI~idka~GkitKlGrSf~rsrdyDamG~~tkfVqCPeGElqkrkevvhtvs 239 (454)
T KOG2680|consen 160 KTTDMETIYDLGMKMIESLTKEKVQAGDVITIDKASGKITKLGRSFTRSRDYDAMGSQTKFVQCPEGELQKRKEVVHTVS 239 (454)
T ss_pred eecchhhHHHHHHHHHHHhhHhhccCCceEEEEcccceeehhhccccccccCCccCCccceecCCchhhhheeeeeEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcccccccccCCccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe
Q 012326 241 LHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI 320 (466)
Q Consensus 241 l~~ld~~~~~~~~~~~l~~~~~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i 320 (466)
|||+|..|++++||+.+|+|+++||..+.|+.++..+.+|.++|+++++|+||||||+|+|+-++|++|++++|+.+.|+
T Consensus 240 LHeIDViNSrtqG~lALFsGdTGEIr~EvRdqin~KV~eWreEGKAeivpGVLFIDEvHMLDIEcFsFlNrAlE~d~~Pi 319 (454)
T KOG2680|consen 240 LHEIDVINSRTQGFLALFSGDTGEIRSEVRDQINTKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENDMAPI 319 (454)
T ss_pred ecccccccccccceEEEEeCCcccccHHHHHHHHHHHHHHHhcCCeeeccceEEEeeehhhhhHHHHHHHHHhhhccCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHH
Q 012326 321 LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAI 400 (466)
Q Consensus 321 iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai 400 (466)
++++||+|...++|+++.+|+++|-+|++|+.++...||+.+++++||..+|.++.+.++++++++|..++...++||++
T Consensus 320 iimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai 399 (454)
T KOG2680|consen 320 IIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAI 399 (454)
T ss_pred EEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 012326 401 HLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINEV 451 (466)
Q Consensus 401 ~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (466)
+++..+...+..++...+..+||++++.+|+|..++.||+.+|+.+|+.+.
T Consensus 400 ~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~Rs~~yl~E~~~~y~~~~ 450 (454)
T KOG2680|consen 400 HLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKRSMKYLTEYQSGYLFSE 450 (454)
T ss_pred HHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhhhhHHHHHhhhcccccc
Confidence 999999999999999999999999999999999999999999999999655
No 2
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=100.00 E-value=2.6e-80 Score=596.43 Aligned_cols=436 Identities=59% Similarity=0.955 Sum_probs=421.0
Q ss_pred hhhHhhHhhhcccccCCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 11 DLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+.....|+++||||+|+|+++..+|+...+.++||.+++++...++++++.|++.++++|+.||||||||++|.++|+++
T Consensus 10 ~~~~~~~i~aHSHI~GLGLdeng~~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 10 DVGERERIAAHSHIKGLGLDENGKAKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred ccchhcccchhccccccccCCCCCEeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh
Confidence 33445689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEeeeccceecccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCC---CCCCC-CceeeEEEeeeccch
Q 012326 91 GLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRP---ATSGA-AAKTGKLTLKTTEME 166 (466)
Q Consensus 91 ~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~---~~~~g-~~~~~~~~l~~~~~~ 166 (466)
|.++||..++++++||.++++++.++++|++++|+++++...+|.||+.++.+++. .++++ .+..+.++|+|.+..
T Consensus 90 G~dvPF~~isgsEiYS~E~kKTE~L~qa~RraIGvrikE~reV~EGeV~~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~ 169 (450)
T COG1224 90 GEDVPFVAISGSEIYSLEVKKTEALTQALRRAIGVRIKETREVYEGEVVELEIRRARNPLNPYGKVPSGAIITLKTKDEE 169 (450)
T ss_pred CCCCCceeeccceeeeecccHHHHHHHHHHHhhceEeeeeeEEEEEEEEEEEEeeccCCCCCccccccceEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999998774 45555 788999999999999
Q ss_pred hHhhhhhHHHHHhhhcccCCCCeEEEEccCCCcccccccccccc-cccccCCceeeecCCChhHHhHHHhhhhcchhhHH
Q 012326 167 TVYDLGGKMIEALGKEKVQSGDVIAIDKVSGKITKLGRSFSRSR-DYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEID 245 (466)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~-~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld 245 (466)
..+.+++++++++.+++|..||+|+|+..||++.+++++..+.. +||. ....|+|||+|++.|++++++.+||||+|
T Consensus 170 k~~~lg~~i~~ql~~~~V~~GDVI~Id~etG~V~klGrs~~~~~~~~dl--~~~~~V~~P~Gev~K~KEi~~~vTLHDlD 247 (450)
T COG1224 170 KTLRLGPEIAEQLVKEGVEEGDVIYIDAETGRVKKLGRSKARAREDFDL--EDTRFVPLPEGEVQKRKEIVQTVTLHDLD 247 (450)
T ss_pred eEeecCHHHHHHHHHhCcccCCEEEEEccccEEEEeecccccccccccc--cceEEEECCCCceeeeEEEEEEEEehhhh
Confidence 99999999999999999999999999999999999999998886 7777 88999999999999999999999999999
Q ss_pred HHhhhcccccccccCCccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEe
Q 012326 246 VINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVAT 325 (466)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~t 325 (466)
..|++++|+..++.+...+|++++|+.+++.+++|.++|++++++|||||||+|+|+-++|++|++++|+.+.|++|++|
T Consensus 248 v~nar~~G~~sl~~~~~~eI~~evR~~vn~~V~~~ieeGkAElVpGVLFIDEvHmLDIE~FsFlnrAlEse~aPIii~At 327 (450)
T COG1224 248 VANARAQGILSLFSGGTGEITDEVREEVNEKVKKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELAPIIILAT 327 (450)
T ss_pred hhhccccchHhhhcCCcccCCHHHHHHHHHHHHHHHhcCcEEeecceEEEechhhhhHHHHHHHHHHhhcccCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012326 326 NRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITA 405 (466)
Q Consensus 326 n~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~ 405 (466)
|+|..+++|++..+|+++|.+|++|+.++...||+.+|++.||+.+|+.+++.++++|++++++++.+.++||+++||..
T Consensus 328 NRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~p 407 (450)
T COG1224 328 NRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTP 407 (450)
T ss_pred CCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHhhhcCCccCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012326 406 AALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 448 (466)
Q Consensus 406 a~~~a~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (466)
+...|...++..|..+||+++..+|+|.++|++|.+.|+.+|+
T Consensus 408 a~iiA~~rg~~~V~~~dVe~a~~lF~D~krSv~~v~~~~~~~~ 450 (450)
T COG1224 408 ASIIAKRRGSKRVEVEDVERAKELFLDVKRSVEYVEKYEGLLL 450 (450)
T ss_pred HHHHHHHhCCCeeehhHHHHHHHHHhhHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999998764
No 3
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=100.00 E-value=4.4e-77 Score=560.32 Aligned_cols=443 Identities=47% Similarity=0.769 Sum_probs=429.6
Q ss_pred ccccccchhhHhhHhhhcccccCCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHH
Q 012326 4 LKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIA 83 (466)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA 83 (466)
|+|+++.+..|.+|+..|||+||+|+++...|.+....++||.+++++...++++++..++.++.+||.||||||||.+|
T Consensus 2 ~~ieeVkst~~~~ria~HsHvkgLGlde~g~~~~~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlA 81 (456)
T KOG1942|consen 2 VKIEEVKSTGRTQRIAAHSHVKGLGLDETGNAVEVAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALA 81 (456)
T ss_pred cchhhhcccccchhhhhhhhccccCcCCCCCeeecccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHH
Confidence 68999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccC---CCCCCC-CceeeEEE
Q 012326 84 MGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDR---PATSGA-AAKTGKLT 159 (466)
Q Consensus 84 ~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~---~~~~~g-~~~~~~~~ 159 (466)
.++++++|..+||..+.+++++|.|+.+++.+++-|++++|+++++...+|.||+..+.|.. +.+++| .+++..+.
T Consensus 82 laisqELG~kvPFcpmvgSEvyS~EvKKTEvLmenfRRaIglRikEtKeVYEGEVtEl~p~e~enp~ggygKtIshv~i~ 161 (456)
T KOG1942|consen 82 LAISQELGPKVPFCPMVGSEVYSNEVKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPVEAENPLGGYGKTISHVVIG 161 (456)
T ss_pred HHHHHHhCCCCCcccccchhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhcceeeEeccccccCCCCccCceeeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999998755 455666 78999999
Q ss_pred eeeccchhHhhhhhHHHHHhhhcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhc
Q 012326 160 LKTTEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCV 239 (466)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~ 239 (466)
|++..+...+++.+.+|++++++++..||+|||++.+|.+++++++..+..+||. +...|+|+|+|++.+++++++.+
T Consensus 162 LKtaKgtKqLkLdPsiyesi~kerv~~GDViYIEaNsGavKrvGRsda~ateFDL--EaeeyVPlPKGeVhKkKeivQdV 239 (456)
T KOG1942|consen 162 LKTAKGTKQLKLDPSIYESIQKERVEVGDVIYIEANSGAVKRVGRSDAYATEFDL--EAEEYVPLPKGEVHKKKEIVQDV 239 (456)
T ss_pred EeecCCcceeccChHHHHHHHHhhhccCcEEEEEeccchhhcccccccchhhccc--ccceeecCCccchhhhHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred chhhHHHHhhhccc-------ccccccCCccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHH
Q 012326 240 TLHEIDVINSRTQG-------FLALFTGDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRA 312 (466)
Q Consensus 240 ~l~~ld~~~~~~~~-------~~~l~~~~~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~ 312 (466)
||||+|.+|.+++| +++++...+.||++.+|..+++++++|+++|.++++|+|+||||+|+|+-++|.+|.++
T Consensus 240 tLhDLD~ANARPqGgqdvlsmmgqlmkPkKTEITdkLR~eiNkvVn~Yid~GvAElvPGVLFIDEVhMLDiEcFTyL~ka 319 (456)
T KOG1942|consen 240 TLHDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGVAELVPGVLFIDEVHMLDIECFTYLHKA 319 (456)
T ss_pred chhhcccccCCCCccchHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcchhhhcCcceEeeehhhhhhHHHHHHHHH
Confidence 99999999999999 77889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCeEEEEeccceeEeecc-cccCCCCCChhHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhc
Q 012326 313 LENEMAPILVVATNRGITRIRGT-NYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVG 391 (466)
Q Consensus 313 le~~~~~iiil~tn~~~~~~~~~-~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a 391 (466)
+|.+..|++||+||+|...++|+ +..+|+++|++|++|+.+++..+|+++++++|++.+++.+++.++++++..++.++
T Consensus 320 lES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 320 LESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIG 399 (456)
T ss_pred hcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhc
Confidence 99999999999999999999995 78889999999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012326 392 EGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 448 (466)
Q Consensus 392 ~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (466)
...++|+++++|..+..+|...|++.|..+||+++..+|+|.++++|.+.+.+.+|+
T Consensus 400 t~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak~s~k~l~~~~~k~~ 456 (456)
T KOG1942|consen 400 TSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDAKRSAKILEESQNKYL 456 (456)
T ss_pred cchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhchhhHHHHHhhhccCC
Confidence 889999999999999999999999999999999999999999999999999988874
No 4
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=100.00 E-value=7.5e-78 Score=589.64 Aligned_cols=388 Identities=67% Similarity=1.036 Sum_probs=321.1
Q ss_pred HhhhcccccCCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCce
Q 012326 17 RIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPF 96 (466)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~ 96 (466)
|+++||||+|||+++..+|....+++|||.++++++..++++++.++..++++||.||||||||++|.++|++++.++||
T Consensus 1 Ri~~HSHI~GLGld~~~~~~~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 1 RIGAHSHIKGLGLDENGEARYIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp HHGCCTT--S--B-TTS-B-SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred CcccccccccCCcCCCCCEeeccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 78999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccceecccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeec---cCCCCCCC-CceeeEEEeeeccchhHhhhh
Q 012326 97 AMISGSEIFSLEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQI---DRPATSGA-AAKTGKLTLKTTEMETVYDLG 172 (466)
Q Consensus 97 ~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~---~~~~~~~g-~~~~~~~~l~~~~~~~~~~~~ 172 (466)
..+++++++|.+++++|.+++.|++++|+++++...+|+||+.++.+ +++.+ +| ..+.+.++|+|.++...++++
T Consensus 81 ~~isgSEiyS~e~kKTE~L~qa~RraIGvrIkE~~eV~EGeVvei~~~~~~~~~~-~~~~~~~~~i~LkT~~~~~~l~l~ 159 (398)
T PF06068_consen 81 VSISGSEIYSSEVKKTEALTQAFRRAIGVRIKEEKEVYEGEVVEIKIEEAENPLN-YGKTIKHGKITLKTTDMEKTLKLG 159 (398)
T ss_dssp EEEEGGGG-BTTC-HHHHHHHHHHCSEEEEEEEEECEEEEEEEEEEE---E-TTS--SSSS-EEEEEEEETTCEEEEEE-
T ss_pred eEcccceeeecccCchHHHHHHHHHhheEEEEEEEEEEEEEEEEEEEeeccCccc-cCCcceEEEEEEEEcCCceEecCC
Confidence 99999999999999999999999999999999999999999999998 44455 45 789999999999999999999
Q ss_pred hHHHHHhhhcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcc
Q 012326 173 GKMIEALGKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQ 252 (466)
Q Consensus 173 ~~~~~~~~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~ 252 (466)
+++|+++++++|..||+|+|+++||.+.+++++..+..+||. +...|+|||+|++++++++++.+||||+|.+|++++
T Consensus 160 ~~i~~~l~kekV~~GDVI~Id~~tG~V~k~Grs~~~~~~~D~--~~~~~V~~P~Gev~K~KEiv~~vTLHDlD~~Nsr~q 237 (398)
T PF06068_consen 160 PKIYEQLQKEKVRVGDVIYIDKNTGRVKKVGRSDSYAKDYDL--EATKFVPCPKGEVHKRKEIVQTVTLHDLDVANSRPQ 237 (398)
T ss_dssp CHHHHHHHHTT--TTCEEEEETTTTEEEEEEEECCCS-TTSE--CCTTEE---SS-SEEEEEEEEEEEHHHHHHHCC---
T ss_pred HHHHHHHHHhCCccCcEEEEECCCCeEEEEecccchhhcccc--ccceEeeCCCCcceEEEEEEEEEeHHHhhhhhhccc
Confidence 999999999999999999999999999999999999999999 888999999999999999999999999999999999
Q ss_pred cccccc----cCCccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccc
Q 012326 253 GFLALF----TGDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRG 328 (466)
Q Consensus 253 ~~~~l~----~~~~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~ 328 (466)
|+..+| .+++.||++++|+.+++.+++|.++|+++++||||||||+|+|+.++|++|++++|.++.|++|++||||
T Consensus 238 ~~lslf~~~~~~~~~EI~~elR~eInk~V~~wieegkAelvpGVLFIDEvHmLDiEcFsfLnralEs~~sPiiIlATNRg 317 (398)
T PF06068_consen 238 DFLSLFGQLFKGDTGEITDELREEINKKVNKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELSPIIILATNRG 317 (398)
T ss_dssp ------------------HHHHHHHHHHHHHHHHCTSEEEEE-EEEEESGGGSBHHHHHHHHHHHTSTT--EEEEEES-S
T ss_pred cHHHHHHhhcCCCcccchHHHHHHHhHHHHHHHhcCceEEecceEEecchhhccHHHHHHHHHHhcCCCCcEEEEecCce
Confidence 988888 8889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012326 329 ITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAA 407 (466)
Q Consensus 329 ~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~ 407 (466)
...++|++..+|+++|.+|++||.+++..||+.+|+++||..+|+.+++.++++++++|..++.+.++|||+++|..|.
T Consensus 318 ~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 318 ITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp EEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred eeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998899999999998774
No 5
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.96 E-value=5.2e-29 Score=237.78 Aligned_cols=106 Identities=21% Similarity=0.314 Sum_probs=100.3
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.|+.+++++|.+++|+....+ ||++||+ .+.+|.++.|||..++|+++..+.+.+.|
T Consensus 130 fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny------------lsrii~pi~SRC~KfrFk~L~d~~iv~rL 197 (346)
T KOG0989|consen 130 FKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY------------LSRIIRPLVSRCQKFRFKKLKDEDIVDRL 197 (346)
T ss_pred ceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCC------------hhhCChHHHhhHHHhcCCCcchHHHHHHH
Confidence 5799999999999999999999999966554 9999998 88999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAAL 408 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~ 408 (466)
+.+|.+|++.+++++++.|+..+ +||+|.|+.+||.+..
T Consensus 198 ~~Ia~~E~v~~d~~al~~I~~~S-~GdLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 198 EKIASKEGVDIDDDALKLIAKIS-DGDLRRAITTLQSLSL 236 (346)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHhhc
Confidence 99999999999999999999999 5999999999999864
No 6
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=4.1e-28 Score=250.10 Aligned_cols=122 Identities=25% Similarity=0.336 Sum_probs=110.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|+||||+|+|+.+++++|++.+|+++.++ ||++|+. ++.++++++|||.++.|.+++.+++.++|
T Consensus 122 ~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte------------~~kI~~TI~SRCq~~~f~~ls~~~i~~~L 189 (484)
T PRK14956 122 YKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTE------------FHKIPETILSRCQDFIFKKVPLSVLQDYS 189 (484)
T ss_pred CEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCC------------hhhccHHHHhhhheeeecCCCHHHHHHHH
Confidence 6799999999999999999999999988777 7888876 88999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..+|+.+++.++++++.+|++.+ +||+|.|+++|+.+...+ ...||.+.|..+++
T Consensus 190 ~~i~~~Egi~~e~eAL~~Ia~~S-~Gd~RdAL~lLeq~i~~~----~~~it~~~V~~~lg 244 (484)
T PRK14956 190 EKLCKIENVQYDQEGLFWIAKKG-DGSVRDMLSFMEQAIVFT----DSKLTGVKIRKMIG 244 (484)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CChHHHHHHHHHHHHHhC----CCCcCHHHHHHHhC
Confidence 99999999999999999999999 699999999999875442 34699999988664
No 7
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.96 E-value=3e-28 Score=259.39 Aligned_cols=122 Identities=28% Similarity=0.357 Sum_probs=109.9
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|+||||+|+|+...++.|+|++|++...+ ||++||+ +..|+++++|||..|.|++++.+++.++|
T Consensus 120 ~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd------------~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L 187 (830)
T PRK07003 120 FKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD------------PQKIPVTVLSRCLQFNLKQMPAGHIVSHL 187 (830)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC------------hhhccchhhhheEEEecCCcCHHHHHHHH
Confidence 6799999999999999999999999987765 8999986 88999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..++..+++.++++++..|++.+ +||+|.++++|+.+..+. ...|+.++|+.+++
T Consensus 188 ~~Il~~EgI~id~eAL~lIA~~A-~GsmRdALsLLdQAia~~----~~~It~~~V~~~LG 242 (830)
T PRK07003 188 ERILGEERIAFEPQALRLLARAA-QGSMRDALSLTDQAIAYS----ANEVTETAVSGMLG 242 (830)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCcCHHHHHHHhC
Confidence 99999999999999999999999 699999999998876543 34688887776654
No 8
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.96 E-value=6.5e-28 Score=238.10 Aligned_cols=217 Identities=24% Similarity=0.413 Sum_probs=167.6
Q ss_pred CCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 27 LGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 27 ~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
.++.++.||+.+ ++++||++....-..+-.++..+.. .+++|||||||||||+|+.||+..+ .+|..++..
T Consensus 12 ~PLA~rmRP~~l-de~vGQ~HLlg~~~~lrr~v~~~~l--~SmIl~GPPG~GKTTlA~liA~~~~--~~f~~~sAv---- 82 (436)
T COG2256 12 MPLAERLRPKSL-DEVVGQEHLLGEGKPLRRAVEAGHL--HSMILWGPPGTGKTTLARLIAGTTN--AAFEALSAV---- 82 (436)
T ss_pred cChHHHhCCCCH-HHhcChHhhhCCCchHHHHHhcCCC--ceeEEECCCCCCHHHHHHHHHHhhC--CceEEeccc----
Confidence 488999999999 9999999998766666677788887 6999999999999999999999998 455544431
Q ss_pred ccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCC
Q 012326 107 LEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQS 186 (466)
Q Consensus 107 ~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
T Consensus 83 -------------------------------------------------------------------------------- 82 (436)
T COG2256 83 -------------------------------------------------------------------------------- 82 (436)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchh
Q 012326 187 GDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIR 266 (466)
Q Consensus 187 ~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~ 266 (466)
+++ .
T Consensus 83 -----------------------------------------------------------------------~~g-----v 86 (436)
T COG2256 83 -----------------------------------------------------------------------TSG-----V 86 (436)
T ss_pred -----------------------------------------------------------------------ccc-----H
Confidence 111 3
Q ss_pred HHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCC-CCCCh
Q 012326 267 AEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSA-HGIPM 345 (466)
Q Consensus 267 ~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~-~~l~~ 345 (466)
.++|+.+....+.. ..|+ ..||||||||+++..-|.+| .|.+ .+|.+.++|+++.|| +.+.+
T Consensus 87 kdlr~i~e~a~~~~-~~gr----~tiLflDEIHRfnK~QQD~l--------Lp~v----E~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 87 KDLREIIEEARKNR-LLGR----RTILFLDEIHRFNKAQQDAL--------LPHV----ENGTIILIGATTENPSFELNP 149 (436)
T ss_pred HHHHHHHHHHHHHH-hcCC----ceEEEEehhhhcChhhhhhh--------hhhh----cCCeEEEEeccCCCCCeeecH
Confidence 45555555443222 2244 67999999999955444444 4555 556777888888888 78999
Q ss_pred hHHhhhhhhccCCCCHHHHHHHHHHHHhhc--CC-----ccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCcc
Q 012326 346 DLLDRLLIISTKPYTRDEIRKILDIRCQEE--DV-----EMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVV 418 (466)
Q Consensus 346 ~llsR~~~i~~~pl~~~el~~iL~~~~~~~--~~-----~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~I 418 (466)
+|+|||.++.|+|++.+++..+|++-+..+ ++ .++++++++++..+ +||.|.++|+|+.+...++... .+
T Consensus 150 ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s-~GD~R~aLN~LE~~~~~~~~~~--~~ 226 (436)
T COG2256 150 ALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLS-NGDARRALNLLELAALSAEPDE--VL 226 (436)
T ss_pred HHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhc-CchHHHHHHHHHHHHHhcCCCc--cc
Confidence 999999999999999999999999844333 33 48999999999999 6999999999999987775332 44
Q ss_pred CHHHHHHHHH
Q 012326 419 EVQDIDRVYR 428 (466)
Q Consensus 419 t~~~v~~~~~ 428 (466)
+.+.++++..
T Consensus 227 ~~~~l~~~l~ 236 (436)
T COG2256 227 ILELLEEILQ 236 (436)
T ss_pred CHHHHHHHHh
Confidence 4777777654
No 9
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=2.3e-27 Score=250.27 Aligned_cols=238 Identities=25% Similarity=0.321 Sum_probs=179.4
Q ss_pred CCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 27 LGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 27 ~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
..|.++|||+.+ ++|+||+++++.+..+ +..+..+ +.+||+||||||||++|+.+|+.++|..+.....|..+.+
T Consensus 4 ~~l~~kyRP~~f-~divGq~~v~~~L~~~---~~~~~l~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 4 QVLARKWRPRCF-QEVIGQAPVVRALSNA---LDQQYLH-HAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred hhHHHHHCCCCH-HHhcCCHHHHHHHHHH---HHhCCCC-eeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 457889999999 9999999999988544 4566664 7899999999999999999999998753322222222111
Q ss_pred ccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCC
Q 012326 107 LEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQS 186 (466)
Q Consensus 107 ~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
+. .+. .-..
T Consensus 79 C~------------------------------------------------------------------~i~-----~g~~ 87 (509)
T PRK14958 79 CR------------------------------------------------------------------EID-----EGRF 87 (509)
T ss_pred HH------------------------------------------------------------------HHh-----cCCC
Confidence 00 000 0001
Q ss_pred CCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchh
Q 012326 187 GDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIR 266 (466)
Q Consensus 187 ~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~ 266 (466)
.|++.++++.+. -.
T Consensus 88 ~d~~eidaas~~------------------------------------------------------------------~v 101 (509)
T PRK14958 88 PDLFEVDAASRT------------------------------------------------------------------KV 101 (509)
T ss_pred ceEEEEcccccC------------------------------------------------------------------CH
Confidence 233444322100 03
Q ss_pred HHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCCh
Q 012326 267 AEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPM 345 (466)
Q Consensus 267 ~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~ 345 (466)
+++|+.+..+.. ....++ ++|++|||+|+|+.+++++|++.+|+++..+ ||++|++ +..+++
T Consensus 102 ~~iR~l~~~~~~-~p~~~~----~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd------------~~kl~~ 164 (509)
T PRK14958 102 EDTRELLDNIPY-APTKGR----FKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD------------HHKLPV 164 (509)
T ss_pred HHHHHHHHHHhh-ccccCC----cEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC------------hHhchH
Confidence 445544433221 112233 6899999999999999999999999988776 8888876 789999
Q ss_pred hHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHH
Q 012326 346 DLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDR 425 (466)
Q Consensus 346 ~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~ 425 (466)
+++|||..+.|.+++.+++.+.+..+++.+++.++++++.++++.+ +||+|.++++|+.+..+ +.+.||.++|+.
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s-~GslR~al~lLdq~ia~----~~~~It~~~V~~ 239 (509)
T PRK14958 165 TVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAA-NGSVRDALSLLDQSIAY----GNGKVLIADVKT 239 (509)
T ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhc----CCCCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999998 69999999999887543 456799999998
Q ss_pred HHH
Q 012326 426 VYR 428 (466)
Q Consensus 426 ~~~ 428 (466)
+.+
T Consensus 240 ~lg 242 (509)
T PRK14958 240 MLG 242 (509)
T ss_pred HHC
Confidence 865
No 10
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=3e-27 Score=249.63 Aligned_cols=238 Identities=27% Similarity=0.350 Sum_probs=177.3
Q ss_pred CCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 27 LGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 27 ~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
..|.++|||+.+ ++|+||+++++.+..+ +..++.+ +.+||+||||+|||++|+++|+.++|..+.....|..+.+
T Consensus 3 ~~LarKyRPktF-ddVIGQe~vv~~L~~a---I~~grl~-HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 3 QVLARKYRPRNF-NELVGQNHVSRALSSA---LERGRLH-HAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred hhHHHHhCCCCH-HHhcCcHHHHHHHHHH---HHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 457789999999 9999999999988544 5567665 8999999999999999999999998743221111211111
Q ss_pred ccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCC
Q 012326 107 LEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQS 186 (466)
Q Consensus 107 ~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
+. . +.. -..
T Consensus 78 C~------------------------------------~------------------------------I~~-----g~h 86 (702)
T PRK14960 78 CK------------------------------------A------------------------------VNE-----GRF 86 (702)
T ss_pred HH------------------------------------H------------------------------Hhc-----CCC
Confidence 00 0 000 001
Q ss_pred CCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchh
Q 012326 187 GDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIR 266 (466)
Q Consensus 187 ~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~ 266 (466)
.|++.++++.+. -.
T Consensus 87 pDviEIDAAs~~------------------------------------------------------------------~V 100 (702)
T PRK14960 87 IDLIEIDAASRT------------------------------------------------------------------KV 100 (702)
T ss_pred CceEEecccccC------------------------------------------------------------------CH
Confidence 133333322100 13
Q ss_pred HHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCCh
Q 012326 267 AEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPM 345 (466)
Q Consensus 267 ~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~ 345 (466)
+++|+.+....... ..++ ++|+||||+|+|+..++++|++.+++++..+ ||++|++ +..++.
T Consensus 101 ddIReli~~~~y~P-~~gk----~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd------------~~kIp~ 163 (702)
T PRK14960 101 EDTRELLDNVPYAP-TQGR----FKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD------------PQKLPI 163 (702)
T ss_pred HHHHHHHHHHhhhh-hcCC----cEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC------------hHhhhH
Confidence 45555444332211 2233 6799999999999999999999999987765 8888876 778999
Q ss_pred hHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHH
Q 012326 346 DLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDR 425 (466)
Q Consensus 346 ~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~ 425 (466)
++++||.++.|.+++.+++.++|..+++.+++.++++++.+|+..+ +||+|.++++|+.+..+ +.+.||.++|+.
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S-~GdLRdALnLLDQaIay----g~g~IT~edV~~ 238 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESA-QGSLRDALSLTDQAIAY----GQGAVHHQDVKE 238 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999998 69999999999877543 456799999988
Q ss_pred HHH
Q 012326 426 VYR 428 (466)
Q Consensus 426 ~~~ 428 (466)
+.+
T Consensus 239 lLG 241 (702)
T PRK14960 239 MLG 241 (702)
T ss_pred Hhc
Confidence 654
No 11
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.95 E-value=4.4e-28 Score=251.56 Aligned_cols=237 Identities=30% Similarity=0.378 Sum_probs=182.3
Q ss_pred CCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceeccc
Q 012326 29 LDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE 108 (466)
Q Consensus 29 ~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e 108 (466)
+--+|||+.| +|++||+++.+.+... +..++.. ++.||.||.|||||++|+.+|+.++|..+...-.|.++..+.
T Consensus 6 L~rKyRP~~F-~evvGQe~v~~~L~na---l~~~ri~-hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 6 LARKYRPKTF-DDVVGQEHVVKTLSNA---LENGRIA-HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred HHHHhCcccH-HHhcccHHHHHHHHHH---HHhCcch-hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 4467999999 9999999999998655 5566765 999999999999999999999999986421111222221110
Q ss_pred CCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCCC
Q 012326 109 MSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSGD 188 (466)
Q Consensus 109 ~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d 188 (466)
++ ..| ..-|
T Consensus 81 ---------------------------------------------------------------------~I-~~g-~~~D 89 (515)
T COG2812 81 ---------------------------------------------------------------------EI-NEG-SLID 89 (515)
T ss_pred ---------------------------------------------------------------------hh-hcC-Cccc
Confidence 00 000 0123
Q ss_pred eEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchhHH
Q 012326 189 VIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAE 268 (466)
Q Consensus 189 ~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~~~ 268 (466)
+|.+|+++|.- .++
T Consensus 90 viEiDaASn~g------------------------------------------------------------------Vdd 103 (515)
T COG2812 90 VIEIDAASNTG------------------------------------------------------------------VDD 103 (515)
T ss_pred chhhhhhhccC------------------------------------------------------------------hHH
Confidence 44444433221 455
Q ss_pred HHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhH
Q 012326 269 VREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDL 347 (466)
Q Consensus 269 ~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~l 347 (466)
+|+-++++. -....++ ++|++|||+|+|+.+++++|+|++|+|+..+ |||+|.. |..+|.++
T Consensus 104 iR~i~e~v~-y~P~~~r----yKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe------------~~Kip~TI 166 (515)
T COG2812 104 IREIIEKVN-YAPSEGR----YKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTE------------PQKIPNTI 166 (515)
T ss_pred HHHHHHHhc-cCCcccc----ceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCC------------cCcCchhh
Confidence 554444332 1112333 7899999999999999999999999999988 8999876 99999999
Q ss_pred HhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 348 LDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 348 lsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
+|||+++.|+.++.+++...|..++.++++.++++++..+++.+ +|++|.++.+|+.+..++ ...||.+.|+.+.
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a-~Gs~RDalslLDq~i~~~----~~~It~~~v~~~l 241 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAA-EGSLRDALSLLDQAIAFG----EGEITLESVRDML 241 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHc-CCChhhHHHHHHHHHHcc----CCcccHHHHHHHh
Confidence 99999999999999999999999999999999999999999998 699999999999986554 2678988888876
Q ss_pred HH
Q 012326 428 RL 429 (466)
Q Consensus 428 ~~ 429 (466)
++
T Consensus 242 G~ 243 (515)
T COG2812 242 GL 243 (515)
T ss_pred CC
Confidence 53
No 12
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.95 E-value=8.5e-27 Score=249.27 Aligned_cols=238 Identities=29% Similarity=0.352 Sum_probs=176.1
Q ss_pred CCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 27 LGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 27 ~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
..|.++|||+.+ ++|+||+++++.+. ..+..++.+ +.+||+||||+|||++|+.+|+.+.|..+.....|..+.+
T Consensus 4 ~~La~KyRP~~f-~divGQe~vv~~L~---~~l~~~rl~-hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 4 QVLARKWRPQTF-AEVVGQEHVLTALA---NALDLGRLH-HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred hhHHHHhCCCCH-HHhcCcHHHHHHHH---HHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 467889999999 99999999999875 445667765 7789999999999999999999998742211112211100
Q ss_pred ccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCC
Q 012326 107 LEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQS 186 (466)
Q Consensus 107 ~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
+. .+... ..
T Consensus 79 C~------------------------------------------------------------------~i~~g-----~~ 87 (647)
T PRK07994 79 CR------------------------------------------------------------------EIEQG-----RF 87 (647)
T ss_pred HH------------------------------------------------------------------HHHcC-----CC
Confidence 00 00000 01
Q ss_pred CCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchh
Q 012326 187 GDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIR 266 (466)
Q Consensus 187 ~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~ 266 (466)
.|++.+++++ ..-.
T Consensus 88 ~D~ieidaas------------------------------------------------------------------~~~V 101 (647)
T PRK07994 88 VDLIEIDAAS------------------------------------------------------------------RTKV 101 (647)
T ss_pred CCceeecccc------------------------------------------------------------------cCCH
Confidence 1223222210 0013
Q ss_pred HHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCCh
Q 012326 267 AEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPM 345 (466)
Q Consensus 267 ~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~ 345 (466)
+++|+.+..+... ...|+ ++|+||||+|+|+.+++++|+|++|+++..+ ||++|++ +..+++
T Consensus 102 ddiR~li~~~~~~-p~~g~----~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~------------~~kLl~ 164 (647)
T PRK07994 102 EDTRELLDNVQYA-PARGR----FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD------------PQKLPV 164 (647)
T ss_pred HHHHHHHHHHHhh-hhcCC----CEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC------------ccccch
Confidence 4455544433211 12344 6799999999999999999999999998876 8888876 789999
Q ss_pred hHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHH
Q 012326 346 DLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDR 425 (466)
Q Consensus 346 ~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~ 425 (466)
+++|||..|.|.+++.+++...|..+++.+++.++++++..|+..+ +|++|.++++++.+... +...|+.++|+.
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s-~Gs~R~Al~lldqaia~----~~~~it~~~v~~ 239 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAA-DGSMRDALSLTDQAIAS----GNGQVTTDDVSA 239 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999998 69999999999877433 345688888776
Q ss_pred HHH
Q 012326 426 VYR 428 (466)
Q Consensus 426 ~~~ 428 (466)
+.+
T Consensus 240 ~lg 242 (647)
T PRK07994 240 MLG 242 (647)
T ss_pred HHc
Confidence 654
No 13
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=1e-26 Score=245.07 Aligned_cols=141 Identities=26% Similarity=0.340 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCC
Q 012326 266 RAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIP 344 (466)
Q Consensus 266 ~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~ 344 (466)
.+++|+.+...... ...++ ++|+||||+|+|+...++.|+|++|++...+ ||++||+ +..|+
T Consensus 106 VDdIReLie~~~~~-P~~gr----~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte------------p~kLl 168 (700)
T PRK12323 106 VDEMAQLLDKAVYA-PTAGR----FKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD------------PQKIP 168 (700)
T ss_pred HHHHHHHHHHHHhc-hhcCC----ceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC------------hHhhh
Confidence 35555554433221 12344 6799999999999999999999999987665 8999986 88999
Q ss_pred hhHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHH
Q 012326 345 MDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDID 424 (466)
Q Consensus 345 ~~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~ 424 (466)
++++|||..+.|.+++.+++.+.|..++..+++.+++++++.|+..+ +|++|.++++++.+..+ +...||.++|+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A-~Gs~RdALsLLdQaia~----~~~~It~~~V~ 243 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA-QGSMRDALSLTDQAIAY----SAGNVSEEAVR 243 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----ccCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999998 69999999999876543 33467777666
Q ss_pred HHHH
Q 012326 425 RVYR 428 (466)
Q Consensus 425 ~~~~ 428 (466)
.+++
T Consensus 244 ~~LG 247 (700)
T PRK12323 244 GMLG 247 (700)
T ss_pred HHhC
Confidence 5443
No 14
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=2.6e-26 Score=239.20 Aligned_cols=237 Identities=22% Similarity=0.293 Sum_probs=177.5
Q ss_pred CCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecc
Q 012326 28 GLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107 (466)
Q Consensus 28 ~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~ 107 (466)
.|..+|||+.+ +||+||+.+++.++. .+..++.+ +++||+||||+|||++|+.+|+.+.|..+...-.|..+.++
T Consensus 2 ~la~KyRP~~f-~dliGQe~vv~~L~~---a~~~~ri~-ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 2 NLALKYRPSSF-KDLVGQDVLVRILRN---AFTLNKIP-QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred ChhHHhCCCCH-HHhcCcHHHHHHHHH---HHHcCCCC-ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 46789999999 999999999998754 45667775 89999999999999999999999976422111111111000
Q ss_pred cCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCC
Q 012326 108 EMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSG 187 (466)
Q Consensus 108 e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
. .+ ..-...
T Consensus 77 ~---------------------------------------------------------------------~i--~~~~~~ 85 (491)
T PRK14964 77 I---------------------------------------------------------------------SI--KNSNHP 85 (491)
T ss_pred H---------------------------------------------------------------------HH--hccCCC
Confidence 0 00 000123
Q ss_pred CeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchhH
Q 012326 188 DVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRA 267 (466)
Q Consensus 188 d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~~ 267 (466)
|++.++++++. -.+
T Consensus 86 Dv~eidaas~~------------------------------------------------------------------~vd 99 (491)
T PRK14964 86 DVIEIDAASNT------------------------------------------------------------------SVD 99 (491)
T ss_pred CEEEEecccCC------------------------------------------------------------------CHH
Confidence 44444433111 034
Q ss_pred HHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChh
Q 012326 268 EVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMD 346 (466)
Q Consensus 268 ~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~ 346 (466)
++|+.++.+- ...-.++ ++|++|||+|.|+.+++++|++.+|+++..+ ||++|+. +..++++
T Consensus 100 dIR~Iie~~~-~~P~~~~----~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte------------~~Kl~~t 162 (491)
T PRK14964 100 DIKVILENSC-YLPISSK----FKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE------------VKKIPVT 162 (491)
T ss_pred HHHHHHHHHH-hccccCC----ceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC------------hHHHHHH
Confidence 4554443321 1111222 6799999999999999999999999988776 8888865 6789999
Q ss_pred HHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHH
Q 012326 347 LLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRV 426 (466)
Q Consensus 347 llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~ 426 (466)
++|||..+.|.+++.+++.+++..+++.+++.++++++++|++.+ +||+|.++++|+.+..++ .+.||.++|+.+
T Consensus 163 I~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s-~GslR~alslLdqli~y~----~~~It~e~V~~l 237 (491)
T PRK14964 163 IISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS-SGSMRNALFLLEQAAIYS----NNKISEKSVRDL 237 (491)
T ss_pred HHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999 599999999999987654 247999999987
Q ss_pred HH
Q 012326 427 YR 428 (466)
Q Consensus 427 ~~ 428 (466)
.+
T Consensus 238 lg 239 (491)
T PRK14964 238 LG 239 (491)
T ss_pred Hc
Confidence 43
No 15
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=1.3e-26 Score=251.15 Aligned_cols=120 Identities=29% Similarity=0.413 Sum_probs=105.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|+||||+|+|+.+++++|++++|+++..+ ||++|+. +..++++++|||.+|.|.|++.+++..+|
T Consensus 120 ~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe------------~~kLl~TIlSRCq~f~fkpLs~eEI~~~L 187 (944)
T PRK14949 120 FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD------------PQKLPVTVLSRCLQFNLKSLTQDEIGTQL 187 (944)
T ss_pred cEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC------------chhchHHHHHhheEEeCCCCCHHHHHHHH
Confidence 6799999999999999999999999988876 7888775 77899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRV 426 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~ 426 (466)
..++..+++.++++++..|+..+ +|++|.++++++.+... +...++.+.|..+
T Consensus 188 ~~il~~EgI~~edeAL~lIA~~S-~Gd~R~ALnLLdQala~----~~~~It~~~V~~l 240 (944)
T PRK14949 188 NHILTQEQLPFEAEALTLLAKAA-NGSMRDALSLTDQAIAF----GGGQVMLTQVQTM 240 (944)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCcccHHHHHHH
Confidence 99999999999999999999999 69999999999877533 3345666655443
No 16
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=5.4e-26 Score=242.14 Aligned_cols=122 Identities=27% Similarity=0.377 Sum_probs=110.5
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|+||||+|.|+...++.|++.++++...+ ||++|++ +..++.+++|||..|.|.+++.+++..+|
T Consensus 120 ~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd------------~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L 187 (709)
T PRK08691 120 YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD------------PHKVPVTVLSRCLQFVLRNMTAQQVADHL 187 (709)
T ss_pred cEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCC------------ccccchHHHHHHhhhhcCCCCHHHHHHHH
Confidence 6799999999999999999999999987665 8888876 78999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..+++.+++.++++++.+|++.+ +||+|.++++|+.+..+ +...|+.++|..+++
T Consensus 188 ~~Il~kEgi~id~eAL~~Ia~~A-~GslRdAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 188 AHVLDSEKIAYEPPALQLLGRAA-AGSMRDALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHcCCCcCHHHHHHHHHHh-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 99999999999999999999999 69999999999887654 345789888888765
No 17
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=5.9e-26 Score=241.62 Aligned_cols=123 Identities=18% Similarity=0.270 Sum_probs=110.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|+||||+|+|+.+++++|++.+|+++..+ ||++|+. +..++++++|||.++.|.+++.+++.++|
T Consensus 119 ~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte------------~~kll~TI~SRc~~~~F~~l~~~~i~~~L 186 (584)
T PRK14952 119 YRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTE------------PEKVLPTIRSRTHHYPFRLLPPRTMRALI 186 (584)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCC------------hHhhHHHHHHhceEEEeeCCCHHHHHHHH
Confidence 6799999999999999999999999988766 8888875 78999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..+++.+++.++++++.+++..+ +||+|.++++|+.+..++ +...||.++|..+++
T Consensus 187 ~~i~~~egi~i~~~al~~Ia~~s-~GdlR~aln~Ldql~~~~---~~~~It~~~v~~llg 242 (584)
T PRK14952 187 ARICEQEGVVVDDAVYPLVIRAG-GGSPRDTLSVLDQLLAGA---ADTHVTYQRALGLLG 242 (584)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcc---CCCCcCHHHHHHHHC
Confidence 99999999999999999999998 599999999999875443 356788888877643
No 18
>PLN03025 replication factor C subunit; Provisional
Probab=99.94 E-value=1.2e-25 Score=225.73 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=104.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.|+...+++|++.++.+...+ ||+++|. +..+.++++|||..++|.+++.+++.++|
T Consensus 100 ~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~------------~~~i~~~L~SRc~~i~f~~l~~~~l~~~L 167 (319)
T PLN03025 100 HKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT------------SSKIIEPIQSRCAIVRFSRLSDQEILGRL 167 (319)
T ss_pred eEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC------------ccccchhHHHhhhcccCCCCCHHHHHHHH
Confidence 5799999999999999999999999866544 8888876 67888999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRV 426 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~ 426 (466)
..+++++++.++++++++++..+ +||+|.+++.|+.+.. +...||.++|..+
T Consensus 168 ~~i~~~egi~i~~~~l~~i~~~~-~gDlR~aln~Lq~~~~-----~~~~i~~~~v~~~ 219 (319)
T PLN03025 168 MKVVEAEKVPYVPEGLEAIIFTA-DGDMRQALNNLQATHS-----GFGFVNQENVFKV 219 (319)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHh-----cCCCCCHHHHHHH
Confidence 99999999999999999999998 6999999999995431 3456888877664
No 19
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=1.5e-25 Score=235.17 Aligned_cols=244 Identities=23% Similarity=0.299 Sum_probs=180.1
Q ss_pred ccCCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEe----e
Q 012326 24 IRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAM----I 99 (466)
Q Consensus 24 ~~~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~----i 99 (466)
-...+|..+|||+.+ ++++||+++.+.+... +..+..+ +++||+||||||||++|+.+|+.++|..+... .
T Consensus 6 ~~y~~la~kyRP~~f-~dliGq~~vv~~L~~a---i~~~ri~-~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 6 NQYIPFARKYRPSNF-AELQGQEVLVKVLSYT---ILNDRLA-GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred ccccchhhhhCCCCH-HHhcCcHHHHHHHHHH---HHcCCCC-ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 346789999999999 9999999999887543 5566664 89999999999999999999999987432110 0
Q ss_pred eccceecccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHh
Q 012326 100 SGSEIFSLEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEAL 179 (466)
Q Consensus 100 ~~~~~~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 179 (466)
.|..+.++ ..+.
T Consensus 81 ~C~~C~~C------------------------------------------------------------------~~i~-- 92 (507)
T PRK06645 81 TCEQCTNC------------------------------------------------------------------ISFN-- 92 (507)
T ss_pred CCCCChHH------------------------------------------------------------------HHHh--
Confidence 01000000 0000
Q ss_pred hhcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhccccccccc
Q 012326 180 GKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFT 259 (466)
Q Consensus 180 ~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~ 259 (466)
.-...|++.++++++.
T Consensus 93 ---~~~h~Dv~eidaas~~------------------------------------------------------------- 108 (507)
T PRK06645 93 ---NHNHPDIIEIDAASKT------------------------------------------------------------- 108 (507)
T ss_pred ---cCCCCcEEEeeccCCC-------------------------------------------------------------
Confidence 0011233433322100
Q ss_pred CCccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeeccccc
Q 012326 260 GDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYK 338 (466)
Q Consensus 260 ~~~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~ 338 (466)
-.+++|+.++..... .-.++ ++|++|||+|.++...++.|++.+++++..+ ||++|+.
T Consensus 109 -----~vd~Ir~iie~a~~~-P~~~~----~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte----------- 167 (507)
T PRK06645 109 -----SVDDIRRIIESAEYK-PLQGK----HKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE----------- 167 (507)
T ss_pred -----CHHHHHHHHHHHHhc-cccCC----cEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCC-----------
Confidence 034555544433211 11222 6799999999999999999999999987765 7777765
Q ss_pred CCCCCChhHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCcc
Q 012326 339 SAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVV 418 (466)
Q Consensus 339 ~~~~l~~~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~I 418 (466)
+..+++++++||.++.|.+++.+++.+++..+++.+++.++++++++|+..+ +||+|.++++|+.+..++.. ....|
T Consensus 168 -~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s-~GslR~al~~Ldkai~~~~~-~~~~I 244 (507)
T PRK06645 168 -VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKS-EGSARDAVSILDQAASMSAK-SDNII 244 (507)
T ss_pred -hHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhcc-CCCCc
Confidence 6789999999999999999999999999999999999999999999999998 69999999999998766531 23479
Q ss_pred CHHHHHHHHH
Q 012326 419 EVQDIDRVYR 428 (466)
Q Consensus 419 t~~~v~~~~~ 428 (466)
|.++|+.+..
T Consensus 245 t~~~V~~llg 254 (507)
T PRK06645 245 SPQVINQMLG 254 (507)
T ss_pred CHHHHHHHHC
Confidence 9999998865
No 20
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=1.8e-25 Score=235.85 Aligned_cols=122 Identities=26% Similarity=0.380 Sum_probs=109.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|+|+..++++|++.+|+++..+ ||++|++ ++.++++++|||..++|.+++.+++.++|
T Consensus 120 ~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd------------~~kil~tI~SRc~~~~f~~Ls~~eI~~~L 187 (546)
T PRK14957 120 YKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTD------------YHKIPVTILSRCIQLHLKHISQADIKDQL 187 (546)
T ss_pred cEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECC------------hhhhhhhHHHheeeEEeCCCCHHHHHHHH
Confidence 6799999999999999999999999987665 8888875 78899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..+++.+++.++++++.+++..+ +||+|.++++|+.+..+. + +.|+.++|+.+.+
T Consensus 188 ~~il~~egi~~e~~Al~~Ia~~s-~GdlR~alnlLek~i~~~---~-~~It~~~V~~~l~ 242 (546)
T PRK14957 188 KIILAKENINSDEQSLEYIAYHA-KGSLRDALSLLDQAISFC---G-GELKQAQIKQMLG 242 (546)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---c-CCCCHHHHHHHHc
Confidence 99999999999999999999999 699999999999887553 2 5799888887543
No 21
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=1.5e-25 Score=228.67 Aligned_cols=122 Identities=26% Similarity=0.350 Sum_probs=109.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.++..++++|++.+++++..+ ||++|++ +..+++++++||..++|.|++.+++.++|
T Consensus 120 ~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~------------~~~l~~tI~SRc~~~~~~~l~~~el~~~L 187 (363)
T PRK14961 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD------------VEKIPKTILSRCLQFKLKIISEEKIFNFL 187 (363)
T ss_pred ceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC------------hHhhhHHHHhhceEEeCCCCCHHHHHHHH
Confidence 5699999999999999999999999987766 7777765 66899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..+++.+++.++++++++++..+ +||+|.++++|+.++.+ +...||.++|++++.
T Consensus 188 ~~~~~~~g~~i~~~al~~ia~~s-~G~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 188 KYILIKESIDTDEYALKLIAYHA-HGSMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 99999999999999999999998 59999999999987644 456899999988764
No 22
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=8.2e-26 Score=241.30 Aligned_cols=122 Identities=25% Similarity=0.357 Sum_probs=110.3
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|+|+.+.+++|++.+|+++..+ ||++|++ +..++++++|||..+.|.+++.+++.++|
T Consensus 125 ~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd------------~~kil~TIlSRc~~~~f~~Ls~eei~~~L 192 (618)
T PRK14951 125 FKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD------------PQKVPVTVLSRCLQFNLRPMAPETVLEHL 192 (618)
T ss_pred ceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC------------chhhhHHHHHhceeeecCCCCHHHHHHHH
Confidence 6799999999999999999999999988765 8888876 78899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..++..+++.++++++.+|+..+ +||+|.++++++.+..+ +...||.++|+.+++
T Consensus 193 ~~i~~~egi~ie~~AL~~La~~s-~GslR~al~lLdq~ia~----~~~~It~~~V~~~Lg 247 (618)
T PRK14951 193 TQVLAAENVPAEPQALRLLARAA-RGSMRDALSLTDQAIAF----GSGQLQEAAVRQMLG 247 (618)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 99999999999999999999998 69999999999877544 345799998887754
No 23
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.94 E-value=1.5e-26 Score=215.14 Aligned_cols=211 Identities=24% Similarity=0.328 Sum_probs=144.2
Q ss_pred cCCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 25 RGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 25 ~~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
...++.+..||+.+ +|++||++++..+..+++.......+..++|||||||+||||+|+.+|++++ .+|...++..+
T Consensus 10 ~~~~l~~~lRP~~L-~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~--~~~~~~sg~~i 86 (233)
T PF05496_consen 10 EEAPLAERLRPKSL-DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG--VNFKITSGPAI 86 (233)
T ss_dssp --S-HHHHTS-SSC-CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EEEEECCC-
T ss_pred cchhhHHhcCCCCH-HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC--CCeEeccchhh
Confidence 34577889999998 9999999999999988887765444457999999999999999999999998 44543333110
Q ss_pred ecccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhccc
Q 012326 105 FSLEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKV 184 (466)
Q Consensus 105 ~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (466)
..
T Consensus 87 ~k------------------------------------------------------------------------------ 88 (233)
T PF05496_consen 87 EK------------------------------------------------------------------------------ 88 (233)
T ss_dssp -S------------------------------------------------------------------------------
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccc
Q 012326 185 QSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGE 264 (466)
Q Consensus 185 ~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~e 264 (466)
T Consensus 89 -------------------------------------------------------------------------------- 88 (233)
T PF05496_consen 89 -------------------------------------------------------------------------------- 88 (233)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEe--------ccceeEeeccc
Q 012326 265 IRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVAT--------NRGITRIRGTN 336 (466)
Q Consensus 265 i~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~t--------n~~~~~~~~~~ 336 (466)
..++... +..+ +. ..||||||+|+++...+..|+.++|+....++|-.. +-..+.+.|++
T Consensus 89 -~~dl~~i----l~~l---~~----~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 89 -AGDLAAI----LTNL---KE----GDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp -CHHHHHH----HHT-----T----T-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred -HHHHHHH----HHhc---CC----CcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 0011000 0010 11 459999999999999999999999985432221111 11236667777
Q ss_pred ccCCCCCChhHHhhhh-hhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 012326 337 YKSAHGIPMDLLDRLL-IISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 337 ~~~~~~l~~~llsR~~-~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a 410 (466)
+. ...+..+|++||- +.++..|+.+|+.+|++..+...++.+++++..+|+..+ +|.+|-|.++|+++..+|
T Consensus 157 Tr-~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rs-rGtPRiAnrll~rvrD~a 229 (233)
T PF05496_consen 157 TR-AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRS-RGTPRIANRLLRRVRDFA 229 (233)
T ss_dssp SS-GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCT-TTSHHHHHHHHHHHCCCC
T ss_pred cc-ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhc-CCChHHHHHHHHHHHHHH
Confidence 66 5789999999994 457999999999999999999999999999999999999 699999999999986555
No 24
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-26 Score=219.53 Aligned_cols=211 Identities=18% Similarity=0.247 Sum_probs=175.6
Q ss_pred CCcccccCCcCCcHHHHHHHHHHH-------HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecccee
Q 012326 33 LEARDVSEGMVGQLPARKAAGVIL-------QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIF 105 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l-------~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~ 105 (466)
.+|..-|+||.|.+.+|+++++.+ +.++.++.|-+++||||||||||+.||+++|.+.+ ..|++++.++++
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--STFFSvSSSDLv 203 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLV 203 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--CceEEeehHHHH
Confidence 567777899999999999999876 44667777889999999999999999999999998 789999999999
Q ss_pred cccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhccc
Q 012326 106 SLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKV 184 (466)
Q Consensus 106 ~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (466)
|.|+++++ .+.++|.+|.--. |+|||+||||++|..|+.+.+. ....+.+.++-+++.-+.
T Consensus 204 SKWmGESEkLVknLFemARe~k---PSIIFiDEiDslcg~r~enEse---------------asRRIKTEfLVQMqGVG~ 265 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENK---PSIIFIDEIDSLCGSRSENESE---------------ASRRIKTEFLVQMQGVGN 265 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcC---CcEEEeehhhhhccCCCCCchH---------------HHHHHHHHHHHhhhcccc
Confidence 99999999 7999999888755 9999999999999998776652 334455667777754333
Q ss_pred CCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhh--------hhcchhhHHHHhhhcccccc
Q 012326 185 QSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVV--------HCVTLHEIDVINSRTQGFLA 256 (466)
Q Consensus 185 ~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~--------~~~~l~~ld~~~~~~~~~~~ 256 (466)
..|.+.|-.+||.++.+|.+.+|.. +..+|||+| +...|..++ +.+|..|++.++.+|.||++
T Consensus 266 -d~~gvLVLgATNiPw~LDsAIRRRF------ekRIYIPLP--e~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySG 336 (439)
T KOG0739|consen 266 -DNDGVLVLGATNIPWVLDSAIRRRF------EKRIYIPLP--EAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSG 336 (439)
T ss_pred -CCCceEEEecCCCchhHHHHHHHHh------hcceeccCC--cHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCc
Confidence 3567999999999999999998766 567899999 667888877 67899999999999999987
Q ss_pred cccCCccchhHHHHHHHHHHHH
Q 012326 257 LFTGDTGEIRAEVREQIDTKVA 278 (466)
Q Consensus 257 l~~~~~~ei~~~~r~~i~~~~~ 278 (466)
.+|+.-+|+++.+-+.
T Consensus 337 ------sDisivVrDalmePvR 352 (439)
T KOG0739|consen 337 ------SDISIVVRDALMEPVR 352 (439)
T ss_pred ------CceEEEehhhhhhhHH
Confidence 5556556666655543
No 25
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=3.4e-25 Score=235.13 Aligned_cols=122 Identities=28% Similarity=0.381 Sum_probs=110.5
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|+|+.+++++|++.+|+++..+ ||++|++ +..++++++|||..+.|.+++.+++.+.|
T Consensus 120 ~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d------------~~kil~tI~SRc~~~~f~~l~~~~i~~~L 187 (527)
T PRK14969 120 FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD------------PQKIPVTVLSRCLQFNLKQMPPPLIVSHL 187 (527)
T ss_pred ceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCC------------hhhCchhHHHHHHHHhcCCCCHHHHHHHH
Confidence 6799999999999999999999999987766 8888876 78899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..+++.+++.++++++.+|+..+ +||+|.++++++.+..+ +.+.|+.++|+.+.+
T Consensus 188 ~~il~~egi~~~~~al~~la~~s-~Gslr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 188 QHILEQENIPFDATALQLLARAA-AGSMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 99999999999999999999998 69999999999988654 456799988887654
No 26
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.5e-26 Score=236.41 Aligned_cols=208 Identities=20% Similarity=0.312 Sum_probs=172.1
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHH--------HHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQM--------IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~--------l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
--|+..|+||-|++++|+.+++.+.+ .+-|..|++++|||||||||||++|+++|++.+ .+|+.+++.++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~--~nFlsvkgpEL 504 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG--MNFLSVKGPEL 504 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc--CCeeeccCHHH
Confidence 34567789999999999999987754 345878889999999999999999999999999 78999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhh--
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGK-- 181 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 181 (466)
+++|++++| .++++|++|.... |||+|.||+|+++..|+.+++| +..+.++++.+
T Consensus 505 ~sk~vGeSEr~ir~iF~kAR~~a---P~IiFfDEiDsi~~~R~g~~~~-------------------v~~RVlsqLLtEm 562 (693)
T KOG0730|consen 505 FSKYVGESERAIREVFRKARQVA---PCIIFFDEIDALAGSRGGSSSG-------------------VTDRVLSQLLTEM 562 (693)
T ss_pred HHHhcCchHHHHHHHHHHHhhcC---CeEEehhhHHhHhhccCCCccc-------------------hHHHHHHHHHHHc
Confidence 999999999 8999999998876 9999999999999999733322 34455555533
Q ss_pred cccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhh----cchh---hHHHHhhhcccc
Q 012326 182 EKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHC----VTLH---EIDVINSRTQGF 254 (466)
Q Consensus 182 ~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~----~~l~---~ld~~~~~~~~~ 254 (466)
.|+....-|+|.++||+++.+|+++.||+|||. ..|+|+| ++..|.+++.. ..++ +++.+...|.||
T Consensus 563 DG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~----iiyVplP--D~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~ 636 (693)
T KOG0730|consen 563 DGLEALKNVLVIAATNRPDMIDPALLRPGRLDR----IIYVPLP--DLEARLEILKQCAKKMPFSEDVDLEELAQATEGY 636 (693)
T ss_pred ccccccCcEEEEeccCChhhcCHHHcCCcccce----eEeecCc--cHHHHHHHHHHHHhcCCCCccccHHHHHHHhccC
Confidence 467777779999999999999999999999999 7899999 66788888743 2333 679999999999
Q ss_pred cccccCCccchhHHHHHHHHHH
Q 012326 255 LALFTGDTGEIRAEVREQIDTK 276 (466)
Q Consensus 255 ~~l~~~~~~ei~~~~r~~i~~~ 276 (466)
++ .|+..-++++-..+
T Consensus 637 SG------Ael~~lCq~A~~~a 652 (693)
T KOG0730|consen 637 SG------AEIVAVCQEAALLA 652 (693)
T ss_pred Ch------HHHHHHHHHHHHHH
Confidence 87 66666666654433
No 27
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.93 E-value=7.2e-26 Score=208.21 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=97.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
.+|+++||+|.|...++.+|.+++|-+...+ |.++||. ...+.+++.|||.+++|..+++.++...|
T Consensus 114 hKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~------------s~KIiEPIQSRCAiLRysklsd~qiL~Rl 181 (333)
T KOG0991|consen 114 HKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQ------------SEKIIEPIQSRCAILRYSKLSDQQILKRL 181 (333)
T ss_pred eeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcc------------hhhhhhhHHhhhHhhhhcccCHHHHHHHH
Confidence 5799999999999999999999999887766 8899986 67899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAA 406 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a 406 (466)
...++.|++.++++.+++++..+ +||+|.++|.||..
T Consensus 182 ~~v~k~Ekv~yt~dgLeaiifta-~GDMRQalNnLQst 218 (333)
T KOG0991|consen 182 LEVAKAEKVNYTDDGLEAIIFTA-QGDMRQALNNLQST 218 (333)
T ss_pred HHHHHHhCCCCCcchHHHhhhhc-cchHHHHHHHHHHH
Confidence 99999999999999999999988 79999999999976
No 28
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.93 E-value=5.7e-25 Score=230.98 Aligned_cols=121 Identities=26% Similarity=0.380 Sum_probs=109.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.|+.+++++|++.+|+++..+ ||++|++ +..++++++|||.+++|.|++.+++..++
T Consensus 118 ~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd------------~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L 185 (535)
T PRK08451 118 FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD------------PLKLPATILSRTQHFRFKQIPQNSIISHL 185 (535)
T ss_pred eEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC------------hhhCchHHHhhceeEEcCCCCHHHHHHHH
Confidence 6799999999999999999999999987766 8888876 78999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
..+++.+|+.++++++.+++..+ +||+|.++++|+.+..++ ...||.++|..+.
T Consensus 186 ~~Il~~EGi~i~~~Al~~Ia~~s-~GdlR~alnlLdqai~~~----~~~It~~~V~~~l 239 (535)
T PRK08451 186 KTILEKEGVSYEPEALEILARSG-NGSLRDTLTLLDQAIIYC----KNAITESKVADML 239 (535)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHHhc----CCCCCHHHHHHHh
Confidence 99999999999999999999998 599999999999887554 3467877777653
No 29
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=5.1e-25 Score=230.25 Aligned_cols=122 Identities=24% Similarity=0.359 Sum_probs=108.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|+||||+|.++.+.++.|++.++++...+ +|++|+. |..+++++++||..+.|.|++.+++..++
T Consensus 118 ~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn------------~~kl~~~L~SR~~vv~f~~l~~~el~~~L 185 (472)
T PRK14962 118 YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTN------------LEKVPPTIISRCQVIEFRNISDELIIKRL 185 (472)
T ss_pred eEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCC------------hHhhhHHHhcCcEEEEECCccHHHHHHHH
Confidence 5799999999999999999999999977655 6677764 67899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
+.+++.+++.++++++++|+..+ +||+|.+++.|+.+..++ + ..||.++|+.+..
T Consensus 186 ~~i~~~egi~i~~eal~~Ia~~s-~GdlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 186 QEVAEAEGIEIDREALSFIAKRA-SGGLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 99999999999999999999988 599999999999876543 2 3499999998875
No 30
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.93 E-value=7.5e-25 Score=207.36 Aligned_cols=244 Identities=25% Similarity=0.357 Sum_probs=186.5
Q ss_pred CCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecc
Q 012326 28 GLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107 (466)
Q Consensus 28 ~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~ 107 (466)
..+...||+.+ ++.+||+++|+.+..++..-+.......++||+||||.||||+|+.+|++++. .+-..++
T Consensus 15 ~~e~~lRP~~l-~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--n~k~tsG------ 85 (332)
T COG2255 15 KIERSLRPKTL-DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV--NLKITSG------ 85 (332)
T ss_pred hhhcccCcccH-HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC--CeEeccc------
Confidence 35677899999 99999999999999999887766666799999999999999999999999983 2221111
Q ss_pred cCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCC
Q 012326 108 EMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSG 187 (466)
Q Consensus 108 e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T Consensus 86 -------------------------------------------------------------------------------- 85 (332)
T COG2255 86 -------------------------------------------------------------------------------- 85 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchhH
Q 012326 188 DVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRA 267 (466)
Q Consensus 188 d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~~ 267 (466)
+++.++++ +..++++
T Consensus 86 ----------------p~leK~gD------------------------------------------laaiLt~------- 100 (332)
T COG2255 86 ----------------PALEKPGD------------------------------------------LAAILTN------- 100 (332)
T ss_pred ----------------ccccChhh------------------------------------------HHHHHhc-------
Confidence 11111111 1111111
Q ss_pred HHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEecc--------ceeEeecccccC
Q 012326 268 EVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNR--------GITRIRGTNYKS 339 (466)
Q Consensus 268 ~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~--------~~~~~~~~~~~~ 339 (466)
.+. ..|+||||+|++++.....|+-+||+....++|-.-.. ..+.+.|+++.
T Consensus 101 -------------Le~------~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr- 160 (332)
T COG2255 101 -------------LEE------GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR- 160 (332)
T ss_pred -------------CCc------CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc-
Confidence 122 45999999999999999999999998544333221110 13455666655
Q ss_pred CCCCChhHHhhh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCcc
Q 012326 340 AHGIPMDLLDRL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVV 418 (466)
Q Consensus 340 ~~~l~~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~I 418 (466)
...+..+|++|| ...++.-|+.+|+..|+.+-+...++++++++...|+..| +|.+|-|.++|++...+|.-++...|
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rS-RGTPRIAnRLLrRVRDfa~V~~~~~I 239 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRS-RGTPRIANRLLRRVRDFAQVKGDGDI 239 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHhcCCcc
Confidence 688999999999 7778999999999999999999999999999999999999 69999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhHHHH------HHHHHHHHHHH
Q 012326 419 EVQDIDRVYRLFLDVQRS------TQYLMEYQSQY 447 (466)
Q Consensus 419 t~~~v~~~~~~~~~~~~~------~~~~~~~~~~~ 447 (466)
+.+-++.++.++ +.+.. .++|+..-.+|
T Consensus 240 ~~~ia~~aL~~L-~Vd~~GLd~~D~k~L~~li~~f 273 (332)
T COG2255 240 DRDIADKALKML-DVDELGLDEIDRKYLRALIEQF 273 (332)
T ss_pred cHHHHHHHHHHh-CcccccccHHHHHHHHHHHHHh
Confidence 999888888755 33321 34555555555
No 31
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.93 E-value=6.4e-25 Score=241.78 Aligned_cols=121 Identities=19% Similarity=0.274 Sum_probs=107.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|+||||+|+|+.+.++.|++++|++...+ |||+|+. +..|+++|+|||..|.|.+++.+++.++|
T Consensus 121 ~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~------------~~kLl~TIrSRc~~v~F~~l~~~~l~~~L 188 (824)
T PRK07764 121 YKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE------------PDKVIGTIRSRTHHYPFRLVPPEVMRGYL 188 (824)
T ss_pred ceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC------------hhhhhHHHHhheeEEEeeCCCHHHHHHHH
Confidence 6799999999999999999999999988776 8888875 66899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRV 426 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~ 426 (466)
..+|+.+++.++++++.+++..+ +||+|.++++|+.+...+ +...||.++|..+
T Consensus 189 ~~il~~EGv~id~eal~lLa~~s-gGdlR~Al~eLEKLia~~---~~~~IT~e~V~al 242 (824)
T PRK07764 189 ERICAQEGVPVEPGVLPLVIRAG-GGSVRDSLSVLDQLLAGA---GPEGVTYERAVAL 242 (824)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhhc---CCCCCCHHHHHHH
Confidence 99999999999999999999999 599999999999876443 3456887776654
No 32
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=1.1e-24 Score=231.13 Aligned_cols=121 Identities=24% Similarity=0.330 Sum_probs=107.3
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|+||||+|.|+.+.++.|++.+|++...+ ||++|+. +..+++++++||..++|.+++.+++..+|
T Consensus 120 ~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~------------~~kll~TI~SRcq~i~F~pLs~~eL~~~L 187 (624)
T PRK14959 120 YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE------------PHKFPVTIVSRCQHFTFTRLSEAGLEAHL 187 (624)
T ss_pred ceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC------------hhhhhHHHHhhhhccccCCCCHHHHHHHH
Confidence 5799999999999999999999999976655 8888875 77889999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
...+..+++.++++++++|++.+ +||+|.++++|+.+. + .+.+.||.++|+.+.
T Consensus 188 ~~il~~egi~id~eal~lIA~~s-~GdlR~Al~lLeqll--~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 188 TKVLGREGVDYDPAAVRLIARRA-AGSVRDSMSLLGQVL--A--LGESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH--H--hcCCCcCHHHHHHHh
Confidence 99999999999999999999999 599999999999763 2 255679988876654
No 33
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=1.1e-24 Score=233.76 Aligned_cols=120 Identities=23% Similarity=0.382 Sum_probs=109.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|+|+.+++++|++++|+++..+ ||++|+. ++.++++++|||..+.|.+++.+++..+|
T Consensus 120 ~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~------------~~kl~~tI~SRc~~~~f~~l~~~~i~~~L 187 (576)
T PRK14965 120 YKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE------------PHKVPITILSRCQRFDFRRIPLQKIVDRL 187 (576)
T ss_pred ceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCC------------hhhhhHHHHHhhhhhhcCCCCHHHHHHHH
Confidence 6799999999999999999999999988765 8888876 78999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRV 426 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~ 426 (466)
..+++++++.++++++.+++..+ +||+|.++++|+.+..++. +.||.++|..+
T Consensus 188 ~~i~~~egi~i~~~al~~la~~a-~G~lr~al~~Ldqliay~g----~~It~edV~~l 240 (576)
T PRK14965 188 RYIADQEGISISDAALALVARKG-DGSMRDSLSTLDQVLAFCG----DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 99999999999999999999999 5999999999998765542 45888888776
No 34
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.93 E-value=9.1e-25 Score=230.76 Aligned_cols=122 Identities=20% Similarity=0.403 Sum_probs=108.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.|+..++++|++.+++++..+ +|++|+. +..++++++|||.++.|.|++.+++..+|
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~------------~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L 187 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE------------FQKIPLTIISRCQRYNFKKLNNSELQELL 187 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCC------------hHhhhHHHHhhhhhcccCCCCHHHHHHHH
Confidence 5799999999999999999999999987655 7778765 78999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..++..+++.++++++..++..+ +||+|.|+++|+.+..+. + ..|+.++|..+.+
T Consensus 188 ~~il~kegi~Is~eal~~La~lS-~GdlR~AlnlLekL~~y~---~-~~It~e~V~ellg 242 (605)
T PRK05896 188 KSIAKKEKIKIEDNAIDKIADLA-DGSLRDGLSILDQLSTFK---N-SEIDIEDINKTFG 242 (605)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhhc---C-CCCCHHHHHHHhc
Confidence 99999999999999999999999 599999999999876554 2 3399888887543
No 35
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.93 E-value=1.3e-24 Score=232.19 Aligned_cols=121 Identities=28% Similarity=0.383 Sum_probs=108.5
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.|+..++++|++++|+++..+ ||++|+. ++.++++++|||..+.|.+++.+++..+|
T Consensus 120 ~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~------------~~ki~~tI~SRc~~~~f~~~~~~ei~~~L 187 (559)
T PRK05563 120 YKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE------------PHKIPATILSRCQRFDFKRISVEDIVERL 187 (559)
T ss_pred eEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC------------hhhCcHHHHhHheEEecCCCCHHHHHHHH
Confidence 6799999999999999999999999987765 7777765 78999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
..+++.+++.++++++..++..+ +||+|.|+++|+.+..++ ...||.++|..+.
T Consensus 188 ~~i~~~egi~i~~~al~~ia~~s-~G~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 188 KYILDKEGIEYEDEALRLIARAA-EGGMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 99999999999999999999998 599999999999876543 4578888877653
No 36
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.1e-25 Score=223.20 Aligned_cols=200 Identities=24% Similarity=0.370 Sum_probs=160.7
Q ss_pred CCCCCCCCCcc----cccCCcCCcHHHHHHHHHHHHHHHc--------CCCCCceEEEecCCCCChHHHHHHHHHHcCCC
Q 012326 26 GLGLDSSLEAR----DVSEGMVGQLPARKAAGVILQMIKE--------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLE 93 (466)
Q Consensus 26 ~~~~~~~~~p~----~~~~~lvG~~~~k~~l~~~l~~l~~--------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~ 93 (466)
++|+.....|. ..|+||.|.|++|+.+++++++++. |+.| +++||+||||||||.||+++|.+.+
T Consensus 286 ~~gl~~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLP-KGVLLvGPPGTGKTlLARAvAGEA~-- 362 (752)
T KOG0734|consen 286 TTGLDSEVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLP-KGVLLVGPPGTGKTLLARAVAGEAG-- 362 (752)
T ss_pred ccccccccChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCC-CceEEeCCCCCchhHHHHHhhcccC--
Confidence 45666777774 3369999999999999999999864 6665 9999999999999999999999998
Q ss_pred CceEeeeccceecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhh
Q 012326 94 TPFAMISGSEIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLG 172 (466)
Q Consensus 94 ~p~~~i~~~~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~ 172 (466)
+||++.++++|-.+.++... .++++|..|.... |||||+||+|++...|....-+ ..
T Consensus 363 VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~A---PcIIFIDEiDavG~kR~~~~~~-------------------y~ 420 (752)
T KOG0734|consen 363 VPFFYASGSEFDEMFVGVGARRVRDLFAAAKARA---PCIIFIDEIDAVGGKRNPSDQH-------------------YA 420 (752)
T ss_pred CCeEeccccchhhhhhcccHHHHHHHHHHHHhcC---CeEEEEechhhhcccCCccHHH-------------------HH
Confidence 99999999999999999998 8999999887654 9999999999997777433211 12
Q ss_pred hHHHHHh--hhcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhh----hcchh---h
Q 012326 173 GKMIEAL--GKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVH----CVTLH---E 243 (466)
Q Consensus 173 ~~~~~~~--~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~----~~~l~---~ 243 (466)
..-++++ .=+|.++.+.|+|.++||+++.+|+++.||+|||+ ...+|.| ++.+|.+|+. .+.+. |
T Consensus 421 kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~----~v~Vp~P--Dv~GR~eIL~~yl~ki~~~~~VD 494 (752)
T KOG0734|consen 421 KQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDR----HVTVPLP--DVRGRTEILKLYLSKIPLDEDVD 494 (752)
T ss_pred HHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccce----eEecCCC--CcccHHHHHHHHHhcCCcccCCC
Confidence 2223333 23577888899999999999999999999999999 5555555 8889999884 34443 4
Q ss_pred HHHHhhhcccccc
Q 012326 244 IDVINSRTQGFLA 256 (466)
Q Consensus 244 ld~~~~~~~~~~~ 256 (466)
.+.++.-|.||.+
T Consensus 495 ~~iiARGT~GFsG 507 (752)
T KOG0734|consen 495 PKIIARGTPGFSG 507 (752)
T ss_pred HhHhccCCCCCch
Confidence 4566666888866
No 37
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.92 E-value=2.3e-24 Score=230.54 Aligned_cols=239 Identities=23% Similarity=0.284 Sum_probs=178.2
Q ss_pred CCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEe-----ee
Q 012326 26 GLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAM-----IS 100 (466)
Q Consensus 26 ~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~-----i~ 100 (466)
...|.++|||+.+ ++|+||+.+++.+..+ +..|+.+ +.+||+||+|+|||++|+.+|+.+.|..+... -.
T Consensus 11 y~~la~KyRP~~f-~dliGq~~~v~~L~~~---~~~gri~-ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 11 YRVLARKYRPQTF-DDLIGQEAMVRTLTNA---FETGRIA-QAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred chhHHhhhCCCCH-HHhcCcHHHHHHHHHH---HHcCCCC-ceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 4578899999988 9999999999988554 5567775 89999999999999999999999987533111 00
Q ss_pred ccceecccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhh
Q 012326 101 GSEIFSLEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALG 180 (466)
Q Consensus 101 ~~~~~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 180 (466)
|..+.++ +.+..
T Consensus 86 cg~c~~C------------------------------------------------------------------~~i~~-- 97 (598)
T PRK09111 86 CGVGEHC------------------------------------------------------------------QAIME-- 97 (598)
T ss_pred CcccHHH------------------------------------------------------------------HHHhc--
Confidence 1100000 00000
Q ss_pred hcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccC
Q 012326 181 KEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTG 260 (466)
Q Consensus 181 ~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~ 260 (466)
-.+.|++.+++++.
T Consensus 98 ---g~h~Dv~e~~a~s~--------------------------------------------------------------- 111 (598)
T PRK09111 98 ---GRHVDVLEMDAASH--------------------------------------------------------------- 111 (598)
T ss_pred ---CCCCceEEeccccc---------------------------------------------------------------
Confidence 01234444332210
Q ss_pred CccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccC
Q 012326 261 DTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKS 339 (466)
Q Consensus 261 ~~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~ 339 (466)
--.+++|+.++.+. ...-.+. ++|+||||+|.|+.+.++.|++.+|+++..+ |||+|+.
T Consensus 112 ---~gvd~IReIie~~~-~~P~~a~----~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte------------ 171 (598)
T PRK09111 112 ---TGVDDIREIIESVR-YRPVSAR----YKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE------------ 171 (598)
T ss_pred ---CCHHHHHHHHHHHH-hchhcCC----cEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCC------------
Confidence 00345555443321 1112222 6799999999999999999999999988766 8888865
Q ss_pred CCCCChhHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccC
Q 012326 340 AHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVE 419 (466)
Q Consensus 340 ~~~l~~~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It 419 (466)
+..++++++|||.++.|.+++.+++..+|..+++++++.++++++++|+..+ +||+|.++++|+.+..+ +.+.||
T Consensus 172 ~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a-~Gdlr~al~~Ldkli~~----g~g~It 246 (598)
T PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAA-EGSVRDGLSLLDQAIAH----GAGEVT 246 (598)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhh----cCCCcC
Confidence 6689999999999999999999999999999999999999999999999999 59999999999887544 245799
Q ss_pred HHHHHHHHH
Q 012326 420 VQDIDRVYR 428 (466)
Q Consensus 420 ~~~v~~~~~ 428 (466)
.++|+.+++
T Consensus 247 ~e~V~~llg 255 (598)
T PRK09111 247 AEAVRDMLG 255 (598)
T ss_pred HHHHHHHhC
Confidence 999998765
No 38
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.92 E-value=1.6e-24 Score=233.02 Aligned_cols=122 Identities=24% Similarity=0.461 Sum_probs=109.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.|+.+++++|++.+|+++..+ ||++|+. +..+++++++||.++.|.|++.+++.++|
T Consensus 119 ~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte------------~~KLl~TI~SRcq~ieF~~L~~eeI~~~L 186 (725)
T PRK07133 119 YKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTE------------VHKIPLTILSRVQRFNFRRISEDEIVSRL 186 (725)
T ss_pred CEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCC------------hhhhhHHHHhhceeEEccCCCHHHHHHHH
Confidence 6799999999999999999999999988765 7888865 78999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..++..+++.++++++..++..+ +|++|.|+++++.+..++ ...||.++|+.+++
T Consensus 187 ~~il~kegI~id~eAl~~LA~lS-~GslR~AlslLekl~~y~----~~~It~e~V~ellg 241 (725)
T PRK07133 187 EFILEKENISYEKNALKLIAKLS-SGSLRDALSIAEQVSIFG----NNKITLKNVEELFG 241 (725)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHHc
Confidence 99999999999999999999999 599999999999876543 34588888887543
No 39
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-24 Score=211.99 Aligned_cols=202 Identities=17% Similarity=0.249 Sum_probs=160.5
Q ss_pred CCCCCcccccCCcCCcHHHHHHHHHHHHH-------H-HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeec
Q 012326 30 DSSLEARDVSEGMVGQLPARKAAGVILQM-------I-KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISG 101 (466)
Q Consensus 30 ~~~~~p~~~~~~lvG~~~~k~~l~~~l~~-------l-~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~ 101 (466)
...-+|...+++|-|.+..++.++++++. + .-|..||+++|||||||||||.+|+|+|++.+ ..|+.+.+
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--AtFIrvvg 218 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--ATFIRVVG 218 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ceEEEecc
Confidence 34467777779999999999999999865 2 23888899999999999999999999999998 78999999
Q ss_pred cceecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhh
Q 012326 102 SEIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALG 180 (466)
Q Consensus 102 ~~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 180 (466)
++++.+++++.. .++++|..|..- +|||||+||||++...|.-.+.|.-+. ....--.+++++
T Consensus 219 SElVqKYiGEGaRlVRelF~lArek---aPsIIFiDEIDAIg~kR~d~~t~gDrE------------VQRTmleLL~ql- 282 (406)
T COG1222 219 SELVQKYIGEGARLVRELFELAREK---APSIIFIDEIDAIGAKRFDSGTSGDRE------------VQRTMLELLNQL- 282 (406)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhc---CCeEEEEechhhhhcccccCCCCchHH------------HHHHHHHHHHhc-
Confidence 999999999998 899999988764 599999999999988774433220110 111112234444
Q ss_pred hcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcch----h---hHHHHhhhccc
Q 012326 181 KEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTL----H---EIDVINSRTQG 253 (466)
Q Consensus 181 ~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l----~---~ld~~~~~~~~ 253 (466)
.|..+.+-|-|..+||+++.+|+|+.||+|||+ .+.+|-++..+|.+++.-++- . +++.+...+.|
T Consensus 283 -DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DR------kIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g 355 (406)
T COG1222 283 -DGFDPRGNVKVIMATNRPDILDPALLRPGRFDR------KIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEG 355 (406)
T ss_pred -cCCCCCCCeEEEEecCCccccChhhcCCCcccc------eeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCC
Confidence 566767778999999999999999999999999 445555588899999954433 2 67888888888
Q ss_pred ccc
Q 012326 254 FLA 256 (466)
Q Consensus 254 ~~~ 256 (466)
+++
T Consensus 356 ~sG 358 (406)
T COG1222 356 FSG 358 (406)
T ss_pred Cch
Confidence 876
No 40
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.92 E-value=2.5e-24 Score=209.19 Aligned_cols=225 Identities=18% Similarity=0.299 Sum_probs=177.8
Q ss_pred ccCCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCC-CceEeeecc
Q 012326 24 IRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLE-TPFAMISGS 102 (466)
Q Consensus 24 ~~~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~-~p~~~i~~~ 102 (466)
+++.++.++.||+.+ +|++||+++..+=..+...+..+..| .++|+||||||||++|+.++...... ..|+.++.
T Consensus 123 ~qh~PLaermRPktL-~dyvGQ~hlv~q~gllrs~ieq~~ip--SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA- 198 (554)
T KOG2028|consen 123 LQHKPLAERMRPKTL-DDYVGQSHLVGQDGLLRSLIEQNRIP--SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA- 198 (554)
T ss_pred hccCChhhhcCcchH-HHhcchhhhcCcchHHHHHHHcCCCC--ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec-
Confidence 578899999999999 99999999988755556667778885 99999999999999999999766421 11111111
Q ss_pred ceecccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhc
Q 012326 103 EIFSLEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKE 182 (466)
Q Consensus 103 ~~~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 182 (466)
T Consensus 199 -------------------------------------------------------------------------------- 198 (554)
T KOG2028|consen 199 -------------------------------------------------------------------------------- 198 (554)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCc
Q 012326 183 KVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDT 262 (466)
Q Consensus 183 ~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~ 262 (466)
+
T Consensus 199 ------------t------------------------------------------------------------------- 199 (554)
T KOG2028|consen 199 ------------T------------------------------------------------------------------- 199 (554)
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred cchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCC-C
Q 012326 263 GEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSA-H 341 (466)
Q Consensus 263 ~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~-~ 341 (466)
..-+.++|+.+.+.-+.+...++ +.|+||||||+. ++..++.+.|.+ ..|.+.++|+++.|| +
T Consensus 200 ~a~t~dvR~ife~aq~~~~l~kr----kTilFiDEiHRF--------NksQQD~fLP~V----E~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 200 NAKTNDVRDIFEQAQNEKSLTKR----KTILFIDEIHRF--------NKSQQDTFLPHV----ENGDITLIGATTENPSF 263 (554)
T ss_pred ccchHHHHHHHHHHHHHHhhhcc----eeEEEeHHhhhh--------hhhhhhccccee----ccCceEEEecccCCCcc
Confidence 01145666666666666665565 789999999999 888889899998 889999999999999 7
Q ss_pred CCChhHHhhhhhhccCCCCHHHHHHHHHHHHhhc-------------CCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 012326 342 GIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEE-------------DVEMAEDAKQLLTRVGEGTSLRYAIHLITAAAL 408 (466)
Q Consensus 342 ~l~~~llsR~~~i~~~pl~~~el~~iL~~~~~~~-------------~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~ 408 (466)
.+..+|+|||.++.+++++.+++..||.+-..-. .+.+++.++++++.++ .||.|.++|.|+.+..
T Consensus 264 qln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls-dGDaR~aLN~Lems~~ 342 (554)
T KOG2028|consen 264 QLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS-DGDARAALNALEMSLS 342 (554)
T ss_pred chhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc-CchHHHHHHHHHHHHH
Confidence 8999999999999999999999999998744311 1358999999999999 6999999999998843
Q ss_pred HHhhh----cCCccCHHHHHHHHH
Q 012326 409 ASQKR----KGKVVEVQDIDRVYR 428 (466)
Q Consensus 409 ~a~~~----~~~~It~~~v~~~~~ 428 (466)
....+ .+..++.+||++.+.
T Consensus 343 m~~tr~g~~~~~~lSidDvke~lq 366 (554)
T KOG2028|consen 343 MFCTRSGQSSRVLLSIDDVKEGLQ 366 (554)
T ss_pred HHHhhcCCcccceecHHHHHHHHh
Confidence 33222 235789999998864
No 41
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=8.5e-24 Score=222.04 Aligned_cols=121 Identities=28% Similarity=0.396 Sum_probs=108.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCC-eEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAP-ILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~-iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.|+.+++++|++.+++++.. ++|++|++ +..+++++++||.++.|.|++.+++..+|
T Consensus 120 ~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~------------~~kl~~tI~SRc~~i~f~~ls~~el~~~L 187 (486)
T PRK14953 120 YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTE------------YDKIPPTILSRCQRFIFSKPTKEQIKEYL 187 (486)
T ss_pred eeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECC------------HHHHHHHHHHhceEEEcCCCCHHHHHHHH
Confidence 679999999999999999999999998654 47778765 67889999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
..+++.+++.++++++++|+..+ +||+|.++++|+.+..++ ...||.++|+.+.
T Consensus 188 ~~i~k~egi~id~~al~~La~~s-~G~lr~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 188 KRICNEEKIEYEEKALDLLAQAS-EGGMRDAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 99999999999999999999998 599999999999886543 4579999998865
No 42
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=1.1e-23 Score=222.03 Aligned_cols=121 Identities=24% Similarity=0.339 Sum_probs=108.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.++.+.++.|++.++++...+ +|++++. +..+++++++||..++|.|++.+++.++|
T Consensus 117 ~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~------------~~kl~~~I~SRc~~~~f~~ls~~el~~~L 184 (504)
T PRK14963 117 RKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE------------PEKMPPTILSRTQHFRFRRLTEEEIAGKL 184 (504)
T ss_pred CeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC------------hhhCChHHhcceEEEEecCCCHHHHHHHH
Confidence 6799999999999999999999999987654 7788875 67899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..+++.+++.++++++.+++..+ +||+|.++++|+.+... ...||.++|..+..
T Consensus 185 ~~i~~~egi~i~~~Al~~ia~~s-~GdlR~aln~Lekl~~~-----~~~It~~~V~~~l~ 238 (504)
T PRK14963 185 RRLLEAEGREAEPEALQLVARLA-DGAMRDAESLLERLLAL-----GTPVTRKQVEEALG 238 (504)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 99999999999999999999999 59999999999987432 34799888887643
No 43
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=2.4e-23 Score=214.88 Aligned_cols=125 Identities=26% Similarity=0.358 Sum_probs=110.3
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.++.+.++.|++.++++...+ ||+++++ +..+.+++++||..++|.|++.+++.+++
T Consensus 128 ~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~------------~~kl~~tl~sR~~~v~f~~l~~~ei~~~l 195 (397)
T PRK14955 128 YRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE------------LHKIPATIASRCQRFNFKRIPLEEIQQQL 195 (397)
T ss_pred eEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC------------hHHhHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 5799999999999999999999999987654 7777765 67888999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-hcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQK-RKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~-~~~~~It~~~v~~~~ 427 (466)
..+++.+++.++++++++++..+ +||+|.+++.|+.+..++.. .+...||.++|..++
T Consensus 196 ~~~~~~~g~~i~~~al~~l~~~s-~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 196 QGICEAEGISVDADALQLIGRKA-QGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 99999999999999999999999 59999999999998777642 235689998887754
No 44
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-23 Score=215.26 Aligned_cols=213 Identities=20% Similarity=0.289 Sum_probs=170.5
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHH-------HH-cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQM-------IK-EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~-------l~-~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
.-|...|+||-|+++++.++..++-. ++ -|..++.++||+||||||||.+|+|+|++.+ .+|+.+.+.++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag--~NFisVKGPEL 581 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG--ANFISVKGPEL 581 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc--CceEeecCHHH
Confidence 45778899999999999999877643 22 2777789999999999999999999999999 89999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhh--
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGK-- 181 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 181 (466)
.++|++++| .++++|.+|..- .||+||.||+|++++.|+..+.+ ...+..+++..
T Consensus 582 lNkYVGESErAVR~vFqRAR~s---aPCVIFFDEiDaL~p~R~~~~s~-------------------~s~RvvNqLLtEl 639 (802)
T KOG0733|consen 582 LNKYVGESERAVRQVFQRARAS---APCVIFFDEIDALVPRRSDEGSS-------------------VSSRVVNQLLTEL 639 (802)
T ss_pred HHHHhhhHHHHHHHHHHHhhcC---CCeEEEecchhhcCcccCCCCch-------------------hHHHHHHHHHHHh
Confidence 999999999 899999988764 59999999999999999765532 33445555522
Q ss_pred cccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcch------h---hHHHHhhhcc
Q 012326 182 EKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTL------H---EIDVINSRTQ 252 (466)
Q Consensus 182 ~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l------~---~ld~~~~~~~ 252 (466)
.|+.....|||.++||+++.+|++..||+|+|. .-|+++| +...|..++..++- + ++|.++..+.
T Consensus 640 DGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk----~LyV~lP--n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~ 713 (802)
T KOG0733|consen 640 DGLEERRGVYVIAATNRPDIIDPAILRPGRLDK----LLYVGLP--NAEERVAILKTITKNTKPPLSSDVDLDEIARNTK 713 (802)
T ss_pred cccccccceEEEeecCCCcccchhhcCCCccCc----eeeecCC--CHHHHHHHHHHHhccCCCCCCcccCHHHHhhccc
Confidence 456666779999999999999999999999998 6699999 55677777755444 2 6677777766
Q ss_pred --cccccccCCccchhHHHHHHHHHHHHHHH
Q 012326 253 --GFLALFTGDTGEIRAEVREQIDTKVAEWR 281 (466)
Q Consensus 253 --~~~~l~~~~~~ei~~~~r~~i~~~~~~~~ 281 (466)
||.+ .++.--+|++--..+....
T Consensus 714 c~gftG------ADLaaLvreAsi~AL~~~~ 738 (802)
T KOG0733|consen 714 CEGFTG------ADLAALVREASILALRESL 738 (802)
T ss_pred ccCCch------hhHHHHHHHHHHHHHHHHH
Confidence 7765 5566666666555544443
No 45
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=1.6e-23 Score=223.12 Aligned_cols=121 Identities=23% Similarity=0.339 Sum_probs=108.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.|+.+++++|++.+++++..+ ||++|+. +..+++++++||..+.|.+++.+++.++|
T Consensus 120 ~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte------------~~kL~~tI~SRc~~~~f~~l~~~el~~~L 187 (563)
T PRK06647 120 YRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE------------VHKLPATIKSRCQHFNFRLLSLEKIYNML 187 (563)
T ss_pred CEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC------------hHHhHHHHHHhceEEEecCCCHHHHHHHH
Confidence 6799999999999999999999999987766 7777765 67899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
..+++.+++.++++++.+|+..+ +||+|.++++|+.+..++ .+.||.++|+.++
T Consensus 188 ~~i~~~egi~id~eAl~lLa~~s-~GdlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 188 KKVCLEDQIKYEDEALKWIAYKS-TGSVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 99999999999999999999998 599999999999876553 3569999888865
No 46
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.91 E-value=4.5e-23 Score=192.65 Aligned_cols=231 Identities=22% Similarity=0.312 Sum_probs=181.1
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHHHHc----CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceeccc
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQMIKE----GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE 108 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~l~~----~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e 108 (466)
..++-.++||+||+++|+..+.++..+.+ |.-.|+++|||||||||||++|+++|++.. +||..++..++.--+
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~l~vkat~liGeh 191 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPLLLVKATELIGEH 191 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--CceEEechHHHHHHH
Confidence 44555679999999999999999988876 444579999999999999999999999998 899999999999999
Q ss_pred CCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCC
Q 012326 109 MSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSG 187 (466)
Q Consensus 109 ~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
++... .+++++.+|.... ||++|+||+|++..+|. |+.+
T Consensus 192 VGdgar~Ihely~rA~~~a---PcivFiDE~DAiaLdRr-----------------------------yQel-------- 231 (368)
T COG1223 192 VGDGARRIHELYERARKAA---PCIVFIDELDAIALDRR-----------------------------YQEL-------- 231 (368)
T ss_pred hhhHHHHHHHHHHHHHhcC---CeEEEehhhhhhhhhhh-----------------------------HHHh--------
Confidence 99887 8999999888765 99999999999966653 2222
Q ss_pred CeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchhH
Q 012326 188 DVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRA 267 (466)
Q Consensus 188 d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~~ 267 (466)
..
T Consensus 232 ------------------------------------------------------------------------------RG 233 (368)
T COG1223 232 ------------------------------------------------------------------------------RG 233 (368)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred HHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhc---CCCeEEEEeccceeEeecccccCCCCCC
Q 012326 268 EVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENE---MAPILVVATNRGITRIRGTNYKSAHGIP 344 (466)
Q Consensus 268 ~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~---~~~iiil~tn~~~~~~~~~~~~~~~~l~ 344 (466)
++.+. .++|+.-+... -.-+.|.+||+ |.-|.
T Consensus 234 DVsEi---------------------------------VNALLTelDgi~eneGVvtIaaTN~------------p~~LD 268 (368)
T COG1223 234 DVSEI---------------------------------VNALLTELDGIKENEGVVTIAATNR------------PELLD 268 (368)
T ss_pred cHHHH---------------------------------HHHHHHhccCcccCCceEEEeecCC------------hhhcC
Confidence 11111 11222211111 11246677776 88999
Q ss_pred hhHHhhh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHhhhcCCccCHHH
Q 012326 345 MDLLDRL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAI-HLITAAALASQKRKGKVVEVQD 422 (466)
Q Consensus 345 ~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai-~lL~~a~~~a~~~~~~~It~~~ 422 (466)
++++||| .-|+|.-++.+|...|+...+++..+.++-. +++++..+.+-+.|... ..|..|..-|..++++.|+.+|
T Consensus 269 ~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~ed 347 (368)
T COG1223 269 PAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVERED 347 (368)
T ss_pred HHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHH
Confidence 9999999 7799999999999999999999998888877 88888887545666554 4667777777778999999999
Q ss_pred HHHHHHH
Q 012326 423 IDRVYRL 429 (466)
Q Consensus 423 v~~~~~~ 429 (466)
+..++..
T Consensus 348 ie~al~k 354 (368)
T COG1223 348 IEKALKK 354 (368)
T ss_pred HHHHHHh
Confidence 9988764
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=99.90 E-value=9.1e-23 Score=215.69 Aligned_cols=216 Identities=20% Similarity=0.305 Sum_probs=165.6
Q ss_pred CCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 27 LGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 27 ~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
+.|.++|+|+.+ ++++|++.+++.+..++..+..|.+ ++++||+||||||||++|+++|++++ .+++.+++++..+
T Consensus 2 ~~W~eKyrP~~l-~dlvg~~~~~~~l~~~l~~~~~g~~-~~~lLL~GppG~GKTtla~ala~el~--~~~ielnasd~r~ 77 (482)
T PRK04195 2 MPWVEKYRPKTL-SDVVGNEKAKEQLREWIESWLKGKP-KKALLLYGPPGVGKTSLAHALANDYG--WEVIELNASDQRT 77 (482)
T ss_pred CCchhhcCCCCH-HHhcCCHHHHHHHHHHHHHHhcCCC-CCeEEEECCCCCCHHHHHHHHHHHcC--CCEEEEccccccc
Confidence 579999999998 9999999999999999988887765 48999999999999999999999998 4455555433211
Q ss_pred ccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCC
Q 012326 107 LEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQS 186 (466)
Q Consensus 107 ~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
. ..+.+++..+..
T Consensus 78 ~-----~~i~~~i~~~~~-------------------------------------------------------------- 90 (482)
T PRK04195 78 A-----DVIERVAGEAAT-------------------------------------------------------------- 90 (482)
T ss_pred H-----HHHHHHHHHhhc--------------------------------------------------------------
Confidence 0 000110000000
Q ss_pred CCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchh
Q 012326 187 GDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIR 266 (466)
Q Consensus 187 ~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~ 266 (466)
...++.
T Consensus 91 -------------------------------------------------------------------~~sl~~------- 96 (482)
T PRK04195 91 -------------------------------------------------------------------SGSLFG------- 96 (482)
T ss_pred -------------------------------------------------------------------cCcccC-------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHhhcccccccceeeeeccccccH----HHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCC
Q 012326 267 AEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDV----ECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHG 342 (466)
Q Consensus 267 ~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~----~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~ 342 (466)
.. +.+++|||+|.+.. ..+..|.+.++....|++ +++|. +..
T Consensus 97 -----------------~~----~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iI-li~n~------------~~~ 142 (482)
T PRK04195 97 -----------------AR----RKLILLDEVDGIHGNEDRGGARAILELIKKAKQPII-LTAND------------PYD 142 (482)
T ss_pred -----------------CC----CeEEEEecCcccccccchhHHHHHHHHHHcCCCCEE-EeccC------------ccc
Confidence 01 56999999999966 668889999987666655 55665 556
Q ss_pred CCh-hHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHH
Q 012326 343 IPM-DLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQ 421 (466)
Q Consensus 343 l~~-~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~ 421 (466)
+++ ++++||..+.|.+++..++..+|..+|..+++.+++++++.|++.+ .||+|.+++.|+.+ + .+...|+.+
T Consensus 143 ~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s-~GDlR~ain~Lq~~---a--~~~~~it~~ 216 (482)
T PRK04195 143 PSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERS-GGDLRSAINDLQAI---A--EGYGKLTLE 216 (482)
T ss_pred cchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHH---h--cCCCCCcHH
Confidence 665 8999999999999999999999999999999999999999999998 59999999999873 2 355678888
Q ss_pred HHHHHH
Q 012326 422 DIDRVY 427 (466)
Q Consensus 422 ~v~~~~ 427 (466)
+++.+.
T Consensus 217 ~v~~~~ 222 (482)
T PRK04195 217 DVKTLG 222 (482)
T ss_pred HHHHhh
Confidence 887654
No 48
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=1.1e-22 Score=218.05 Aligned_cols=125 Identities=29% Similarity=0.405 Sum_probs=110.5
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.|+.+.++.|++.+|+++..+ ||++|++ +..+++++++||..+.|.+++.+++..+|
T Consensus 128 ~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~------------~~kLl~TI~SRc~~vef~~l~~~ei~~~L 195 (620)
T PRK14954 128 YRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE------------LHKIPATIASRCQRFNFKRIPLDEIQSQL 195 (620)
T ss_pred CEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC------------hhhhhHHHHhhceEEecCCCCHHHHHHHH
Confidence 5799999999999999999999999987665 7788865 67899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-hhcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ-KRKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~-~~~~~~It~~~v~~~~ 427 (466)
..+++.+++.++++++++++..+ +||+|.+++.|+....++. ......||.++|.+++
T Consensus 196 ~~i~~~egi~I~~eal~~La~~s-~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 196 QMICRAEGIQIDADALQLIARKA-QGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 99999999999999999999999 5999999999998876652 1235679988887764
No 49
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.90 E-value=2.2e-22 Score=210.11 Aligned_cols=121 Identities=26% Similarity=0.332 Sum_probs=106.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.++.+.++.|++.++++...+ +|++|+. +..+.+++++||..+.|.+++.+++.++|
T Consensus 122 ~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~------------~~kl~~tI~sRc~~v~f~~l~~~el~~~L 189 (451)
T PRK06305 122 YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE------------IHKIPGTILSRCQKMHLKRIPEETIIDKL 189 (451)
T ss_pred CEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCC------------hHhcchHHHHhceEEeCCCCCHHHHHHHH
Confidence 6799999999999999999999999987665 7777765 67899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
...++.+++.+++++++.|+..+ +||+|.+++.++.+..+. + +.||.++|..++
T Consensus 190 ~~~~~~eg~~i~~~al~~L~~~s-~gdlr~a~~~Lekl~~~~---~-~~It~~~V~~l~ 243 (451)
T PRK06305 190 ALIAKQEGIETSREALLPIARAA-QGSLRDAESLYDYVVGLF---P-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---c-CCcCHHHHHHHH
Confidence 99999999999999999999999 599999999999875442 2 348888876654
No 50
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.1e-23 Score=201.19 Aligned_cols=215 Identities=19% Similarity=0.271 Sum_probs=167.6
Q ss_pred CcccccCCcCCcHHHHHHHHHHH-------HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 34 EARDVSEGMVGQLPARKAAGVIL-------QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 34 ~p~~~~~~lvG~~~~k~~l~~~l-------~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
.|.--|+||.|..++|+.+++++ +++++.+.|-+++|++||||||||.||+++|.+++ ..|+.|+.+.+.|
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~--tTFFNVSsstltS 283 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG--TTFFNVSSSTLTS 283 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc--CeEEEechhhhhh
Confidence 45566799999999999999887 34677778889999999999999999999999999 7899999999999
Q ss_pred ccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhh--hcc
Q 012326 107 LEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALG--KEK 183 (466)
Q Consensus 107 ~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~ 183 (466)
+|-+++| .++-+|.+|. ++.|++||+||||+++..|...+.+ +..-.+...++.++. ...
T Consensus 284 KwRGeSEKlvRlLFemAR---fyAPStIFiDEIDslcs~RG~s~EH--------------EaSRRvKsELLvQmDG~~~t 346 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMAR---FYAPSTIFIDEIDSLCSQRGGSSEH--------------EASRRVKSELLVQMDGVQGT 346 (491)
T ss_pred hhccchHHHHHHHHHHHH---HhCCceeehhhHHHHHhcCCCccch--------------hHHHHHHHHHHHHhhccccc
Confidence 9999999 7888888776 4569999999999999988665543 222334445555551 111
Q ss_pred cCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhh----hcchh---hHHHHhhhcccccc
Q 012326 184 VQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVH----CVTLH---EIDVINSRTQGFLA 256 (466)
Q Consensus 184 ~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~----~~~l~---~ld~~~~~~~~~~~ 256 (466)
..-..+|.|-++||.+|.+|.++.|.. +...|||+|+ ...|...+. .+.+. .++.+..++.||++
T Consensus 347 ~e~~k~VmVLAATN~PWdiDEAlrRRl------EKRIyIPLP~--~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySG 418 (491)
T KOG0738|consen 347 LENSKVVMVLAATNFPWDIDEALRRRL------EKRIYIPLPD--AEARSALIKILLRSVELDDPVNLEDLAERSEGYSG 418 (491)
T ss_pred cccceeEEEEeccCCCcchHHHHHHHH------hhheeeeCCC--HHHHHHHHHHhhccccCCCCccHHHHHHHhcCCCh
Confidence 222357999999999999999998876 7788999995 456666553 22222 55788888999977
Q ss_pred cccCCccchhHHHHHHHHHHHHHHH
Q 012326 257 LFTGDTGEIRAEVREQIDTKVAEWR 281 (466)
Q Consensus 257 l~~~~~~ei~~~~r~~i~~~~~~~~ 281 (466)
.+|+.-+|++-...+.+..
T Consensus 419 ------aDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 419 ------ADITNVCREASMMAMRRKI 437 (491)
T ss_pred ------HHHHHHHHHHHHHHHHHHH
Confidence 7888888887766665554
No 51
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=2.3e-22 Score=216.51 Aligned_cols=119 Identities=21% Similarity=0.275 Sum_probs=104.5
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.|+.+++++|++.+|++...+ ||++|++ +..+.+++++||..+.|.+++.+++...|
T Consensus 122 ~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~------------~~~llpTIrSRc~~~~f~~l~~~ei~~~L 189 (620)
T PRK14948 122 WKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD------------PQRVLPTIISRCQRFDFRRIPLEAMVQHL 189 (620)
T ss_pred ceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC------------hhhhhHHHHhheeEEEecCCCHHHHHHHH
Confidence 5799999999999999999999999987766 7788875 77899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRV 426 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~ 426 (466)
..++.++++.++++++..++..+ +||+|.|+++|+....+. ..||.++|..+
T Consensus 190 ~~ia~kegi~is~~al~~La~~s-~G~lr~A~~lLeklsL~~-----~~It~e~V~~l 241 (620)
T PRK14948 190 SEIAEKESIEIEPEALTLVAQRS-QGGLRDAESLLDQLSLLP-----GPITPEAVWDL 241 (620)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcc-----CCCCHHHHHHH
Confidence 99999999999999999999999 599999999999765432 24766666543
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.90 E-value=6.4e-22 Score=199.54 Aligned_cols=128 Identities=27% Similarity=0.332 Sum_probs=107.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC------------------CCe-EEEEeccceeEeecccccCCCCCChhHHhh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM------------------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDR 350 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~------------------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR 350 (466)
.+|+||||+|.++......|...+++.. .++ +|.+|++ +..++++|++|
T Consensus 103 ~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~------------~~~l~~~L~sR 170 (328)
T PRK00080 103 GDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR------------AGLLTSPLRDR 170 (328)
T ss_pred CCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC------------cccCCHHHHHh
Confidence 4699999999998877777777776532 122 4444443 56888999999
Q ss_pred h-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHH
Q 012326 351 L-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRL 429 (466)
Q Consensus 351 ~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~ 429 (466)
| ..+.|.+|+.+++.++|...+...++.+++++++.|++.+ +|++|.+.++|+.+...+...+...|+.++++.+...
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~-~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRS-RGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9 6789999999999999999999999999999999999999 5999999999999887776666778999999999875
Q ss_pred H
Q 012326 430 F 430 (466)
Q Consensus 430 ~ 430 (466)
+
T Consensus 250 ~ 250 (328)
T PRK00080 250 L 250 (328)
T ss_pred h
Confidence 4
No 53
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=2.8e-22 Score=216.10 Aligned_cols=121 Identities=23% Similarity=0.339 Sum_probs=106.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|+||||+|.|+.+.++.|++.++++...+ ||++++. +..+++++++||.++.|.+++.+++..++
T Consensus 121 ~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~------------~~kll~tI~SR~~~i~f~~l~~~el~~~L 188 (585)
T PRK14950 121 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE------------VHKVPATILSRCQRFDFHRHSVADMAAHL 188 (585)
T ss_pred eEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC------------hhhhhHHHHhccceeeCCCCCHHHHHHHH
Confidence 6799999999999999999999999987554 7777764 66788999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
..++..+++.++++++.+|+..+ +||+|.+++.|+....+ +...||.++|+.++
T Consensus 189 ~~~a~~egl~i~~eal~~La~~s-~Gdlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 189 RKIAAAEGINLEPGALEAIARAA-TGSMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 99999999999999999999998 59999999999987543 34579999887653
No 54
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.89 E-value=5.4e-22 Score=201.97 Aligned_cols=122 Identities=26% Similarity=0.393 Sum_probs=107.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.++...++.|++.+++++..+ +|+++++ +..+++++++||..+.|.|++.+++.+++
T Consensus 118 ~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~------------~~~l~~~l~sr~~~~~~~~~~~~~l~~~l 185 (355)
T TIGR02397 118 YKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTE------------PHKIPATILSRCQRFDFKRIPLEDIVERL 185 (355)
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCC------------HHHHHHHHHhheeEEEcCCCCHHHHHHHH
Confidence 5699999999999999999999999876655 6777765 66788999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..+++.+++.++++++.+++..+ +||+|.+++.++.+..++ .+.||.++|+.+..
T Consensus 186 ~~~~~~~g~~i~~~a~~~l~~~~-~g~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 186 KKILDKEGIKIEDEALELIARAA-DGSLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 99999999999999999999998 599999999999886654 24599998887653
No 55
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=5e-22 Score=213.96 Aligned_cols=120 Identities=20% Similarity=0.295 Sum_probs=106.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.|+.+++++|++.+|+++..+ ||++|+. ++.+.++++|||..+.|.+++.+++..+|
T Consensus 122 ~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~------------~~kIl~tI~SRc~iv~f~~ls~~ei~~~L 189 (614)
T PRK14971 122 YKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE------------KHKILPTILSRCQIFDFNRIQVADIVNHL 189 (614)
T ss_pred cEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCC------------chhchHHHHhhhheeecCCCCHHHHHHHH
Confidence 6799999999999999999999999987655 7788865 67999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRV 426 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~ 426 (466)
..++..+++.++++++++|+..+ +||+|.+++.|+.+..++ +.. ||.++|...
T Consensus 190 ~~ia~~egi~i~~~al~~La~~s-~gdlr~al~~Lekl~~y~---~~~-It~~~V~~~ 242 (614)
T PRK14971 190 QYVASKEGITAEPEALNVIAQKA-DGGMRDALSIFDQVVSFT---GGN-ITYKSVIEN 242 (614)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---cCC-ccHHHHHHH
Confidence 99999999999999999999999 599999999999876555 222 777666554
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.89 E-value=9.5e-22 Score=198.59 Aligned_cols=121 Identities=20% Similarity=0.264 Sum_probs=104.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+++++|||+|.++.+.++.|.+.++...... +|++++. +..+.+++.+||..+.|.|++.+++..+|
T Consensus 126 ~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~------------~~~~~~~L~sr~~~v~~~~~~~~~~~~~l 193 (337)
T PRK12402 126 YKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ------------PSKLIPPIRSRCLPLFFRAPTDDELVDVL 193 (337)
T ss_pred CcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC------------hhhCchhhcCCceEEEecCCCHHHHHHHH
Confidence 5699999999999999999999998765543 7777764 55778899999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
...+..+++.+++++++.++..+ .||+|.+++.|+.++ .+.+.||.++|+.++.
T Consensus 194 ~~~~~~~~~~~~~~al~~l~~~~-~gdlr~l~~~l~~~~-----~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 194 ESIAEAEGVDYDDDGLELIAYYA-GGDLRKAILTLQTAA-----LAAGEITMEAAYEALG 247 (337)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH-----HcCCCCCHHHHHHHhC
Confidence 99999999999999999999999 699999999998653 2334799999887654
No 57
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.89 E-value=1.8e-21 Score=195.06 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=105.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.+++|||+|.+..+.++.|.+.++.+.... +|+++|. +..+.+++.+||.+++|.|++.+++..++
T Consensus 103 ~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~------------~~~l~~~l~sr~~~~~~~~l~~~ei~~~l 170 (319)
T PRK00440 103 FKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY------------SSKIIDPIQSRCAVFRFSPLKKEAVAERL 170 (319)
T ss_pred ceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC------------ccccchhHHHHhheeeeCCCCHHHHHHHH
Confidence 4699999999999999999999998765544 7777765 56788899999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..++..+++.++++++++++..+ +||+|.+++.|+.++.. +..||.++|+.+..
T Consensus 171 ~~~~~~~~~~i~~~al~~l~~~~-~gd~r~~~~~l~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 171 RYIAENEGIEITDDALEAIYYVS-EGDMRKAINALQAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHhC
Confidence 99999999999999999999998 59999999999976543 35799999888753
No 58
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=7.4e-22 Score=202.10 Aligned_cols=122 Identities=24% Similarity=0.328 Sum_probs=107.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.++...++.|++.++++.... +|++++. +..+.+++.+||..++|.|++.+++..++
T Consensus 109 ~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~------------~~kl~~~l~sr~~~v~~~~~~~~~l~~~l 176 (367)
T PRK14970 109 YKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTE------------KHKIIPTILSRCQIFDFKRITIKDIKEHL 176 (367)
T ss_pred cEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCC------------cccCCHHHHhcceeEecCCccHHHHHHHH
Confidence 5699999999999999999999999876544 7777764 67889999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
...++++++.++++++++++..+ +||+|.+++.|+....++ +.. ||.++|+.++.
T Consensus 177 ~~~~~~~g~~i~~~al~~l~~~~-~gdlr~~~~~lekl~~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 177 AGIAVKEGIKFEDDALHIIAQKA-DGALRDALSIFDRVVTFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc---CCC-CCHHHHHHHhC
Confidence 99999999999999999999998 599999999999987665 223 88888887754
No 59
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.1e-22 Score=203.22 Aligned_cols=194 Identities=22% Similarity=0.327 Sum_probs=154.2
Q ss_pred cccCCcCCcHHHHHHHHHHHHHHHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccC
Q 012326 37 DVSEGMVGQLPARKAAGVILQMIKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM 109 (466)
Q Consensus 37 ~~~~~lvG~~~~k~~l~~~l~~l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~ 109 (466)
..|+++-|.+.....+.+++..+.. |..|++++||+||||||||+||+++|.+++ +||+.+++.++++-.-
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VPFLSISAPEIVSGVS 264 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--CceEeecchhhhcccC
Confidence 3459999999999998888877543 778899999999999999999999999999 9999999999999999
Q ss_pred CHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccC--C
Q 012326 110 SKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQ--S 186 (466)
Q Consensus 110 ~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 186 (466)
+++| .++++|.+|.+.. ||++|+||||++.+.|..... +....+-..++..+..-.-. .
T Consensus 265 GESEkkiRelF~~A~~~a---PcivFiDeIDAI~pkRe~aqr---------------eMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNA---PCIVFIDEIDAITPKREEAQR---------------EMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred cccHHHHHHHHHHHhccC---CeEEEeecccccccchhhHHH---------------HHHHHHHHHHHHhhhcccccccC
Confidence 9998 8999999999865 999999999999999865432 12222334455555322222 4
Q ss_pred CCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhh----cchh---hHHHHhhhcccccc
Q 012326 187 GDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHC----VTLH---EIDVINSRTQGFLA 256 (466)
Q Consensus 187 ~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~----~~l~---~ld~~~~~~~~~~~ 256 (466)
|+-|.|.++||+++.+++++.|++|||+ .+-+..| +-..|.++++. +.+. +++.++..|.||.+
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdr----EI~l~vP--~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVG 397 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDR----EICLGVP--SETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVG 397 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccc----eeeecCC--chHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccc
Confidence 7889999999999999999999999999 4444455 33456666643 3222 67788888999876
No 60
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.88 E-value=1.7e-21 Score=194.37 Aligned_cols=144 Identities=26% Similarity=0.287 Sum_probs=113.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCC------------------e-EEEEeccceeEeecccccCCCCCChhHHhh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAP------------------I-LVVATNRGITRIRGTNYKSAHGIPMDLLDR 350 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~------------------i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR 350 (466)
+.++||||+|.++...+..|...+++.... + ++.+|++ +..+++++++|
T Consensus 82 ~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~------------~~~l~~~l~sR 149 (305)
T TIGR00635 82 GDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTR------------AGMLTSPLRDR 149 (305)
T ss_pred CCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCC------------ccccCHHHHhh
Confidence 469999999999998888888777654322 2 3334433 56788999999
Q ss_pred h-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHH
Q 012326 351 L-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRL 429 (466)
Q Consensus 351 ~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~ 429 (466)
| ..++|.||+.+++.+++...+...++.+++++++++++.+ +|++|.+.++++.++..|...+...|+.++++.+...
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~-~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRS-RGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-CCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 9 6678999999999999999999999999999999999998 6999999999999887876666678999999999876
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q 012326 430 FLDVQRSTQYLMEYQSQYIN 449 (466)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~ 449 (466)
+ +.. ...+..++++|+.
T Consensus 229 l-~~~--~~~l~~~~~~~L~ 245 (305)
T TIGR00635 229 L-MID--ELGLDEIDRKLLS 245 (305)
T ss_pred h-CCC--CCCCCHHHHHHHH
Confidence 3 221 1223445555554
No 61
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.4e-23 Score=215.56 Aligned_cols=158 Identities=16% Similarity=0.259 Sum_probs=131.3
Q ss_pred CcccccCCcCCcHHHHHHHHHHHHH-------HHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 34 EARDVSEGMVGQLPARKAAGVILQM-------IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 34 ~p~~~~~~lvG~~~~k~~l~~~l~~-------l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
-|+..|+||-|.+++|..+..-++. +..|..+..++|||||||||||.+|+|+|.++. ..|.++.+.+..+
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--L~FlSVKGPELLN 743 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELLN 743 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--eeEEeecCHHHHH
Confidence 4666789999999999998766644 566777678999999999999999999999998 8899999999999
Q ss_pred ccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCC-CCCceeeEEEeeeccchhHhhhhhHHHHHhh--hc
Q 012326 107 LEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATS-GAAAKTGKLTLKTTEMETVYDLGGKMIEALG--KE 182 (466)
Q Consensus 107 ~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~-~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~ 182 (466)
+++|++| ++++.|.+|...+ ||+||.||+|+++|+|...+ +|.+. .+...++. =+
T Consensus 744 MYVGqSE~NVR~VFerAR~A~---PCVIFFDELDSlAP~RG~sGDSGGVM------------------DRVVSQLLAELD 802 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAA---PCVIFFDELDSLAPNRGRSGDSGGVM------------------DRVVSQLLAELD 802 (953)
T ss_pred HHhcchHHHHHHHHHHhhccC---CeEEEeccccccCccCCCCCCccccH------------------HHHHHHHHHHhh
Confidence 9999999 9999999998876 99999999999999997655 33121 22223321 12
Q ss_pred ccC--CCCeEEEEccCCCcccccccccccccccc
Q 012326 183 KVQ--SGDVIAIDKVSGKITKLGRSFSRSRDYDA 214 (466)
Q Consensus 183 ~~~--~~d~i~i~~~t~~~~~~~~~~~r~~~~d~ 214 (466)
++. ..+-|+|..+||+|+.+|+++.||+|||-
T Consensus 803 gls~~~s~~VFViGATNRPDLLDpALLRPGRFDK 836 (953)
T KOG0736|consen 803 GLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDK 836 (953)
T ss_pred cccCCCCCceEEEecCCCccccChhhcCCCccce
Confidence 333 34569999999999999999999999998
No 62
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.87 E-value=3.2e-21 Score=210.36 Aligned_cols=126 Identities=19% Similarity=0.266 Sum_probs=98.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCC-CCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSA-HGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~-~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
.+++||||+|.++...+..|+..+++.. -++|.+|+ .+| ..++++++|||.++.|+|++.+++..++
T Consensus 110 ~~IL~IDEIh~Ln~~qQdaLL~~lE~g~-IiLI~aTT-----------enp~~~l~~aL~SR~~v~~l~pLs~edi~~IL 177 (725)
T PRK13341 110 RTILFIDEVHRFNKAQQDALLPWVENGT-ITLIGATT-----------ENPYFEVNKALVSRSRLFRLKSLSDEDLHQLL 177 (725)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHhcCce-EEEEEecC-----------CChHhhhhhHhhccccceecCCCCHHHHHHHH
Confidence 4699999999999999999999887632 11222222 234 5788999999999999999999999999
Q ss_pred HHHHh-------hcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcC--CccCHHHHHHHHH
Q 012326 369 DIRCQ-------EEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKG--KVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~-------~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~--~~It~~~v~~~~~ 428 (466)
...+. .+++.++++++++|++.+ .||+|.++++|+.+...+...+. ..||.+.+++++.
T Consensus 178 ~~~l~~~~~~~g~~~v~I~deaL~~La~~s-~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~ 245 (725)
T PRK13341 178 KRALQDKERGYGDRKVDLEPEAEKHLVDVA-NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQ 245 (725)
T ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHH
Confidence 99887 457899999999999999 69999999999998654422222 2377777777653
No 63
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.87 E-value=5.2e-21 Score=198.65 Aligned_cols=122 Identities=23% Similarity=0.377 Sum_probs=99.9
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCC-CCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSA-HGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~-~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
.+|+||||+|+++...++.|+..+++.. -++|.+|+ .+| ..+++++++||.++.|.|++.+++..++
T Consensus 93 ~~vL~IDEi~~l~~~~q~~LL~~le~~~-iilI~att-----------~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL 160 (413)
T PRK13342 93 RTILFIDEIHRFNKAQQDALLPHVEDGT-ITLIGATT-----------ENPSFEVNPALLSRAQVFELKPLSEEDIEQLL 160 (413)
T ss_pred ceEEEEechhhhCHHHHHHHHHHhhcCc-EEEEEeCC-----------CChhhhccHHHhccceeeEeCCCCHHHHHHHH
Confidence 5699999999999999999999988732 12333332 223 5788999999999999999999999999
Q ss_pred HHHHhhc--CC-ccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHH
Q 012326 369 DIRCQEE--DV-EMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRL 429 (466)
Q Consensus 369 ~~~~~~~--~~-~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~ 429 (466)
...+... ++ .+++++++.+++.+ .||+|.++++|+.+... ...|+.++++.+...
T Consensus 161 ~~~l~~~~~~~i~i~~~al~~l~~~s-~Gd~R~aln~Le~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 161 KRALEDKERGLVELDDEALDALARLA-NGDARRALNLLELAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhh
Confidence 9887653 44 89999999999999 69999999999987644 457999999888764
No 64
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.6e-21 Score=200.28 Aligned_cols=212 Identities=18% Similarity=0.288 Sum_probs=169.2
Q ss_pred cCCcCCcHHHHHHHHHHHHH-------H-HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCC
Q 012326 39 SEGMVGQLPARKAAGVILQM-------I-KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMS 110 (466)
Q Consensus 39 ~~~lvG~~~~k~~l~~~l~~-------l-~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~ 110 (466)
|+|+-|..++|+.+.+++.. + ..+.+-..++|||||||||||.+|.++|..++ ..|+.+.+.++.++++|
T Consensus 666 w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~--~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 666 WEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN--LRFISVKGPELLSKYIG 743 (952)
T ss_pred ceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC--eeEEEecCHHHHHHHhc
Confidence 58999999999999888754 1 22444468999999999999999999999988 78999999999999999
Q ss_pred HHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCCCe
Q 012326 111 KTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSGDV 189 (466)
Q Consensus 111 ~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 189 (466)
.+| .++.+|.+|...+ ||++|.||+|+++|.|...+.| ...+.+ ..++..+ +|++.=|+
T Consensus 744 aSEq~vR~lF~rA~~a~---PCiLFFDEfdSiAPkRGhDsTG-VTDRVV--------------NQlLTel--DG~Egl~G 803 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAK---PCILFFDEFDSIAPKRGHDSTG-VTDRVV--------------NQLLTEL--DGAEGLDG 803 (952)
T ss_pred ccHHHHHHHHHHhhccC---CeEEEeccccccCcccCCCCCC-chHHHH--------------HHHHHhh--ccccccce
Confidence 999 8999999998876 9999999999999999888776 221111 1223333 45555678
Q ss_pred EEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcch-------hhHHHHhhhcccccccccCCc
Q 012326 190 IAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTL-------HEIDVINSRTQGFLALFTGDT 262 (466)
Q Consensus 190 i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l-------~~ld~~~~~~~~~~~l~~~~~ 262 (466)
++|.++|.+|+.+|+|+.||+|+|. .+-||-++-..|.++++.++- -|++.++.+|.||.+
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~------~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tg------ 871 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDK------LVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTG------ 871 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccce------eeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCch------
Confidence 9999999999999999999999998 445555566788888754432 277899999999976
Q ss_pred cchhHHHHHHHHHHHHHHHhhc
Q 012326 263 GEIRAEVREQIDTKVAEWREEG 284 (466)
Q Consensus 263 ~ei~~~~r~~i~~~~~~~~~~~ 284 (466)
.++..-+.++-...+.+|.+..
T Consensus 872 ADlq~ll~~A~l~avh~~l~~~ 893 (952)
T KOG0735|consen 872 ADLQSLLYNAQLAAVHEILKRE 893 (952)
T ss_pred hhHHHHHHHHHHHHHHHHHHhc
Confidence 5666666666666677776443
No 65
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.6e-20 Score=191.27 Aligned_cols=361 Identities=20% Similarity=0.302 Sum_probs=232.3
Q ss_pred CCcCCcHHHHHHHHHHHHHH--------HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCH
Q 012326 40 EGMVGQLPARKAAGVILQMI--------KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSK 111 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~l--------~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~ 111 (466)
+++.|......++...+..- ..|..+++++|+|||||||||.+++++|++.+ ..++.+++.++.++..++
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~--a~~~~i~~peli~k~~gE 261 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG--AFLFLINGPELISKFPGE 261 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC--ceeEecccHHHHHhcccc
Confidence 57777777777777766541 23777789999999999999999999999998 678999999999999999
Q ss_pred HH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCCCeE
Q 012326 112 TE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSGDVI 190 (466)
Q Consensus 112 ~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 190 (466)
++ .++..|+.+.... .|+++|+||+|++++.+..... ....+...++.-+ ++....--+
T Consensus 262 te~~LR~~f~~a~k~~--~psii~IdEld~l~p~r~~~~~----------------~e~Rv~sqlltL~--dg~~~~~~v 321 (693)
T KOG0730|consen 262 TESNLRKAFAEALKFQ--VPSIIFIDELDALCPKREGADD----------------VESRVVSQLLTLL--DGLKPDAKV 321 (693)
T ss_pred hHHHHHHHHHHHhccC--CCeeEeHHhHhhhCCcccccch----------------HHHHHHHHHHHHH--hhCcCcCcE
Confidence 99 8999999887643 3999999999999998743321 0111112222222 233333447
Q ss_pred EEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhh----hc---chhhHHHHhhhcccccc-------
Q 012326 191 AIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVH----CV---TLHEIDVINSRTQGFLA------- 256 (466)
Q Consensus 191 ~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~----~~---~l~~ld~~~~~~~~~~~------- 256 (466)
+|.++||+++.+++++.| +|||. +....+|-..+ |.+++. .+ ...++..++..++||.+
T Consensus 322 ivl~atnrp~sld~alRR-gRfd~--ev~IgiP~~~~----RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~ 394 (693)
T KOG0730|consen 322 IVLAATNRPDSLDPALRR-GRFDR--EVEIGIPGSDG----RLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALC 394 (693)
T ss_pred EEEEecCCccccChhhhc-CCCcc--eeeecCCCchh----HHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHH
Confidence 788899999999999999 99999 44444443322 222221 11 11123333333344321
Q ss_pred -----------------------------cc-cCCc---cch--hHHHHHHHHHHHH-------HHHhhc----------
Q 012326 257 -----------------------------LF-TGDT---GEI--RAEVREQIDTKVA-------EWREEG---------- 284 (466)
Q Consensus 257 -----------------------------l~-~~~~---~ei--~~~~r~~i~~~~~-------~~~~~~---------- 284 (466)
.. ...+ .+| -++++.++++.+. .|.+-|
T Consensus 395 ~ea~~~~~r~~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLly 474 (693)
T KOG0730|consen 395 REASLQATRRTLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLY 474 (693)
T ss_pred HHHHHHHhhhhHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEE
Confidence 00 0000 000 0112222221110 000000
Q ss_pred ------------------------------------------------ccccccceeeeeccccccH-----------HH
Q 012326 285 ------------------------------------------------KAEIVPGVLFIDEVHMLDV-----------EC 305 (466)
Q Consensus 285 ------------------------------------------------~~~~~~~vl~iDEi~~l~~-----------~~ 305 (466)
--+..++|+|+||+|.+.. ..
T Consensus 475 GPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RV 554 (693)
T KOG0730|consen 475 GPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRV 554 (693)
T ss_pred CCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHH
Confidence 0011268999999998832 33
Q ss_pred HHHHHHHhhhc--CCCe-EEEEeccceeEeecccccCCCCCChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCcc
Q 012326 306 FSFLNRALENE--MAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEM 379 (466)
Q Consensus 306 ~~~L~~~le~~--~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i 379 (466)
++.|+.-|..- ...+ +|-+||| |..|.+++++ |+ ..+++++++.+.-.+||+..+++- .+
T Consensus 555 lsqLLtEmDG~e~~k~V~ViAATNR------------pd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm--p~ 620 (693)
T KOG0730|consen 555 LSQLLTEMDGLEALKNVLVIAATNR------------PDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM--PF 620 (693)
T ss_pred HHHHHHHcccccccCcEEEEeccCC------------hhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC--CC
Confidence 55555544321 2244 7778888 9999999999 88 778899999999999999887754 45
Q ss_pred CHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh--cCCccCHHHHHHHHHHHHhHHHHHHHHHHHH
Q 012326 380 AED-AKQLLTRVGEGTSLRYAIHLITAAALASQKR--KGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQ 444 (466)
Q Consensus 380 ~~~-~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~--~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~ 444 (466)
+++ -++.|++.+..-+......+++.|+.+|... ....|+.+|..++.... ....+...++.|+
T Consensus 621 ~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~-r~s~~~~~~~~Ye 687 (693)
T KOG0730|consen 621 SEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAV-RPSLTSELLEKYE 687 (693)
T ss_pred CccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhh-cccCCHHHHHHHH
Confidence 444 4777888765567789999999999888654 34678888888887543 3332333444444
No 66
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7.9e-21 Score=202.96 Aligned_cols=156 Identities=21% Similarity=0.310 Sum_probs=126.4
Q ss_pred cccCCcCCcHHHHHHHHHHHHHHHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccC
Q 012326 37 DVSEGMVGQLPARKAAGVILQMIKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM 109 (466)
Q Consensus 37 ~~~~~lvG~~~~k~~l~~~l~~l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~ 109 (466)
..|.||.|.+++|+.++++++++++ |-..|+++||+||||||||.||+|+|.+.+ +||+.+++++|..+..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg--VPF~svSGSEFvE~~~ 385 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSVSGSEFVEMFV 385 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC--CceeeechHHHHHHhc
Confidence 4459999999999999999999876 444579999999999999999999999999 9999999999999998
Q ss_pred CHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCC--CCCCCceeeEEEeeeccchhHhhhhhHHHHHh--hhccc
Q 012326 110 SKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPA--TSGAAAKTGKLTLKTTEMETVYDLGGKMIEAL--GKEKV 184 (466)
Q Consensus 110 ~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~--~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~ 184 (466)
+... .++.+|..+..- .||+||+||+|++...|.- .+.| ...+. .-++++ .=++.
T Consensus 386 g~~asrvr~lf~~ar~~---aP~iifideida~~~~r~G~~~~~~-~~e~e----------------~tlnQll~emDgf 445 (774)
T KOG0731|consen 386 GVGASRVRDLFPLARKN---APSIIFIDEIDAVGRKRGGKGTGGG-QDERE----------------QTLNQLLVEMDGF 445 (774)
T ss_pred ccchHHHHHHHHHhhcc---CCeEEEecccccccccccccccCCC-ChHHH----------------HHHHHHHHHhcCC
Confidence 8866 899999887764 5999999999999887741 1111 11111 113333 22455
Q ss_pred CCCCeEEEEccCCCcccccccccccccccc
Q 012326 185 QSGDVIAIDKVSGKITKLGRSFSRSRDYDA 214 (466)
Q Consensus 185 ~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~ 214 (466)
..++-+.+.++||+++.+|+++.||+|||+
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr 475 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDR 475 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCcccc
Confidence 666778899999999999999999999999
No 67
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.86 E-value=2.6e-19 Score=198.50 Aligned_cols=175 Identities=21% Similarity=0.344 Sum_probs=129.6
Q ss_pred cccccCCcCCcHHHHHHHHHHHHHH--------HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 35 ARDVSEGMVGQLPARKAAGVILQMI--------KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 35 p~~~~~~lvG~~~~k~~l~~~l~~l--------~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
|...|++|.|.+.+++.+..++... .-|..+++++||+||||||||++|+++|++++ .+|+.+++.++.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~~i~i~~~~i~~ 250 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AYFISINGPEIMS 250 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeEEEEecHHHhc
Confidence 5566799999999999998887642 22556679999999999999999999999998 7899999999998
Q ss_pred ccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccC
Q 012326 107 LEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQ 185 (466)
Q Consensus 107 ~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
.+.+..+ .++.+|..+... .|++||+||+|++.+.+.....+ ....+...++..+ .+..
T Consensus 251 ~~~g~~~~~l~~lf~~a~~~---~p~il~iDEid~l~~~r~~~~~~---------------~~~~~~~~Ll~~l--d~l~ 310 (733)
T TIGR01243 251 KYYGESEERLREIFKEAEEN---APSIIFIDEIDAIAPKREEVTGE---------------VEKRVVAQLLTLM--DGLK 310 (733)
T ss_pred ccccHHHHHHHHHHHHHHhc---CCcEEEeehhhhhcccccCCcch---------------HHHHHHHHHHHHh--hccc
Confidence 8888877 788899877643 49999999999998776432211 0011122233333 2222
Q ss_pred CCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhh
Q 012326 186 SGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVH 237 (466)
Q Consensus 186 ~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~ 237 (466)
....+.|..+||.++.+++++.+++||+. ...++.| +...|..++.
T Consensus 311 ~~~~vivI~atn~~~~ld~al~r~gRfd~----~i~i~~P--~~~~R~~Il~ 356 (733)
T TIGR01243 311 GRGRVIVIGATNRPDALDPALRRPGRFDR----EIVIRVP--DKRARKEILK 356 (733)
T ss_pred cCCCEEEEeecCChhhcCHHHhCchhccE----EEEeCCc--CHHHHHHHHH
Confidence 23346777889999999999999999998 5566777 3445655553
No 68
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.85 E-value=5.4e-20 Score=192.73 Aligned_cols=238 Identities=16% Similarity=0.164 Sum_probs=177.2
Q ss_pred CCCCCCCcccccCCcCCcHHHHHHHHHHHHHH-----HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecc
Q 012326 28 GLDSSLEARDVSEGMVGQLPARKAAGVILQMI-----KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGS 102 (466)
Q Consensus 28 ~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l-----~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~ 102 (466)
++.+.+.|...|++|.|.+.+|+.+......+ ..|..+++++|||||||||||++|+++|.+++ .||+.++++
T Consensus 216 ~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~~~l~~~ 293 (489)
T CHL00195 216 EILEFYSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPLLRLDVG 293 (489)
T ss_pred ccccccCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEEEEEhH
Confidence 45666777777799999999999887654433 34667789999999999999999999999998 899999999
Q ss_pred ceecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhh
Q 012326 103 EIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGK 181 (466)
Q Consensus 103 ~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 181 (466)
.+++.++++++ .++++|..+... .||+||+||+|++...+...+.+
T Consensus 294 ~l~~~~vGese~~l~~~f~~A~~~---~P~IL~IDEID~~~~~~~~~~d~------------------------------ 340 (489)
T CHL00195 294 KLFGGIVGESESRMRQMIRIAEAL---SPCILWIDEIDKAFSNSESKGDS------------------------------ 340 (489)
T ss_pred HhcccccChHHHHHHHHHHHHHhc---CCcEEEehhhhhhhccccCCCCc------------------------------
Confidence 99999999988 899999877654 49999999999975543211110
Q ss_pred cccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCC
Q 012326 182 EKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGD 261 (466)
Q Consensus 182 ~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~ 261 (466)
T Consensus 341 -------------------------------------------------------------------------------- 340 (489)
T CHL00195 341 -------------------------------------------------------------------------------- 340 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCC
Q 012326 262 TGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSA 340 (466)
Q Consensus 262 ~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~ 340 (466)
... ...+..++..+++...++ +|.+||+ +
T Consensus 341 -----~~~---------------------------------~rvl~~lL~~l~~~~~~V~vIaTTN~------------~ 370 (489)
T CHL00195 341 -----GTT---------------------------------NRVLATFITWLSEKKSPVFVVATANN------------I 370 (489)
T ss_pred -----hHH---------------------------------HHHHHHHHHHHhcCCCceEEEEecCC------------h
Confidence 000 011122223333334456 5566666 8
Q ss_pred CCCChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCc-cCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCC
Q 012326 341 HGIPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVE-MAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGK 416 (466)
Q Consensus 341 ~~l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~-i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~ 416 (466)
..+++++++ || ..+.+..|+.++..+|++..+.+.+.. .++.-++.+++.+.+-+....-+++..|...|.. ...
T Consensus 371 ~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~-~~~ 449 (489)
T CHL00195 371 DLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFY-EKR 449 (489)
T ss_pred hhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH-cCC
Confidence 899999987 77 678899999999999999988876432 3445578888888656677777778777766643 456
Q ss_pred ccCHHHHHHHHHHHH
Q 012326 417 VVEVQDIDRVYRLFL 431 (466)
Q Consensus 417 ~It~~~v~~~~~~~~ 431 (466)
.+|.+|+..++..+.
T Consensus 450 ~lt~~dl~~a~~~~~ 464 (489)
T CHL00195 450 EFTTDDILLALKQFI 464 (489)
T ss_pred CcCHHHHHHHHHhcC
Confidence 799999999987553
No 69
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.85 E-value=8.1e-20 Score=183.20 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=92.5
Q ss_pred cceeeeeccccc-cHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHH
Q 012326 290 PGVLFIDEVHML-DVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKI 367 (466)
Q Consensus 290 ~~vl~iDEi~~l-~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~i 367 (466)
++|++|||+|.+ ..+.+..|...++++...+ ||++||. +..+++++++||..+.|.+++.++...+
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~------------~~~l~~~l~sR~~~i~~~~p~~~~~~~i 168 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANN------------KNGIIEPLRSRCRVIDFGVPTKEEQIEM 168 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCC------------hhhchHHHHhhceEEEeCCCCHHHHHHH
Confidence 569999999999 6677788888888866554 7778875 6788999999999999999999887755
Q ss_pred HH-------HHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHH
Q 012326 368 LD-------IRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDR 425 (466)
Q Consensus 368 L~-------~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~ 425 (466)
+. .++..+++.++++++.+++..+ .||.|.+++.++.... ...++.+++..
T Consensus 169 l~~~~~~~~~~~~~~~~~i~~~al~~l~~~~-~~d~r~~l~~l~~~~~------~~~i~~~~l~~ 226 (316)
T PHA02544 169 MKQMIVRCKGILEAEGVEVDMKVLAALVKKN-FPDFRRTINELQRYAS------TGKIDAGILSE 226 (316)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHc------cCCCCHHHHHH
Confidence 44 3455678999999999999988 5999999999986531 24566655544
No 70
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.85 E-value=3.6e-20 Score=197.30 Aligned_cols=137 Identities=24% Similarity=0.317 Sum_probs=112.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCC--------------Ce---EEEEe-ccceeEeecccccCCCCCChhHHhhh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMA--------------PI---LVVAT-NRGITRIRGTNYKSAHGIPMDLLDRL 351 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~--------------~i---iil~t-n~~~~~~~~~~~~~~~~l~~~llsR~ 351 (466)
.++|||||+|.|+...++.|++.+++... |- .++.. -.-.+.+.++++.+|..+++++++||
T Consensus 176 gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~ 255 (531)
T TIGR02902 176 GGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC 255 (531)
T ss_pred CcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh
Confidence 57999999999999999999999986321 00 00000 00123455555667899999999999
Q ss_pred hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 352 LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 352 ~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..+.|.||+.+++..+++..+++.++.+++++++.|...+ .|.|.+.++++.|+..|..+++..|+.+|+..++.
T Consensus 256 ~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 256 VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 9999999999999999999999999999999999998877 48899999999999888777778999999999975
No 71
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.85 E-value=2.8e-19 Score=191.76 Aligned_cols=151 Identities=21% Similarity=0.245 Sum_probs=109.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhh---cCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhh--hhccCCCCHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALEN---EMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLL--IISTKPYTRDE 363 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~---~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~--~i~~~pl~~~e 363 (466)
..||+|||+|.|....+..|+.+++. ....+ +|.++|. ...+..+.+.+++||. .+.|.||+.+|
T Consensus 870 v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd---------lDLperLdPRLRSRLg~eeIvF~PYTaEQ 940 (1164)
T PTZ00112 870 VSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT---------MDLPERLIPRCRSRLAFGRLVFSPYKGDE 940 (1164)
T ss_pred ceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc---------hhcchhhhhhhhhccccccccCCCCCHHH
Confidence 35899999999975444445544443 22334 6666664 1124566678888883 48899999999
Q ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHH--HHHH
Q 012326 364 IRKILDIRCQEEDVEMAEDAKQLLTRVGE--GTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQR--STQY 439 (466)
Q Consensus 364 l~~iL~~~~~~~~~~i~~~~l~~l~~~a~--~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~--~~~~ 439 (466)
+.+||..++......++++|+++|++.++ .||+|.|+++|+.|... .++..|+++||++|......... .++.
T Consensus 941 L~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~srI~e~Ikt 1017 (1164)
T PTZ00112 941 IEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFDSPLTNAINY 1017 (1164)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHhhhHHHHHHc
Confidence 99999999987666799999999998543 49999999999999765 35568999999999865433322 4555
Q ss_pred HHHHHHHHHhhhh
Q 012326 440 LMEYQSQYINEVT 452 (466)
Q Consensus 440 ~~~~~~~~~~~~~ 452 (466)
+-.+++..+-.+.
T Consensus 1018 LPlHqKLVLlALI 1030 (1164)
T PTZ00112 1018 LPWPFKMFLTCLI 1030 (1164)
T ss_pred CCHHHHHHHHHHH
Confidence 6666666654433
No 72
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.6e-21 Score=201.50 Aligned_cols=198 Identities=21% Similarity=0.338 Sum_probs=154.8
Q ss_pred CcccccCCcCCcHHHHHHHHHHHHHHHcCC-------CCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 34 EARDVSEGMVGQLPARKAAGVILQMIKEGK-------IAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 34 ~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~-------~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
.+...|.|+.|.+++|+.+.++++.++++. .-|+++||+||||||||.+|+++|.+.+ +||+.+++++|+.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~--VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC--CCceeccchhhhh
Confidence 445566999999999999999999987532 2359999999999999999999999998 9999999999999
Q ss_pred ccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccC
Q 012326 107 LEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQ 185 (466)
Q Consensus 107 ~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
+.++... .++++|.++... +|||+|+||+|++.-.|..+.+|... +.+-+ ...++. .-++..
T Consensus 222 mfVGvGAsRVRdLF~qAkk~---aP~IIFIDEiDAvGr~Rg~g~Gggnd---------erEQT---LNQlLv--EmDGF~ 284 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKN---APCIIFIDEIDAVGRQRGAGLGGGND---------EREQT---LNQLLV--EMDGFG 284 (596)
T ss_pred hhcCCCcHHHHHHHHHhhcc---CCCeEEEehhhhcccccCCCCCCCch---------HHHHH---HHHHHh--hhccCC
Confidence 9999988 899999988764 59999999999998877655332111 00000 111222 234555
Q ss_pred CCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhc----chh---hHHHHhhhcccccc
Q 012326 186 SGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCV----TLH---EIDVINSRTQGFLA 256 (466)
Q Consensus 186 ~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~----~l~---~ld~~~~~~~~~~~ 256 (466)
.++.|.|.++||+++.+|+++.||+|||+ +..++.| ++..|+.++..+ .+. ++..+...|.||++
T Consensus 285 ~~~gviviaaTNRpdVlD~ALlRpgRFDR----qI~V~~P--Di~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsG 356 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPALLRPGRFDR----QILVELP--DIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSG 356 (596)
T ss_pred CCCceEEEecCCCcccchHhhcCCCCcce----eeecCCc--chhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCccc
Confidence 66789999999999999999999999999 7777777 677888887522 222 45566677888766
No 73
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=1.3e-19 Score=183.20 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=89.3
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCC-eEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAP-ILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~-iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.|+..++++|++.+|++... +||++|+. |..++++++|||..++|.||+.+++.++|
T Consensus 142 ~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~------------~~~llptIrSRc~~i~l~pl~~~~~~~~L 209 (351)
T PRK09112 142 WRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHS------------SGRLLPTIRSRCQPISLKPLDDDELKKAL 209 (351)
T ss_pred ceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECC------------hhhccHHHHhhccEEEecCCCHHHHHHHH
Confidence 679999999999999999999999997654 47888876 78899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITA 405 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~ 405 (466)
...+...+ ++++++..++..+ +|++|.|+++++.
T Consensus 210 ~~~~~~~~--~~~~~~~~i~~~s-~G~pr~Al~ll~~ 243 (351)
T PRK09112 210 SHLGSSQG--SDGEITEALLQRS-KGSVRKALLLLNY 243 (351)
T ss_pred HHhhcccC--CCHHHHHHHHHHc-CCCHHHHHHHHhc
Confidence 98554333 8899999999999 5999999999954
No 74
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.84 E-value=5.5e-19 Score=180.61 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=107.9
Q ss_pred cceeeeecccccc---HHHHHHHHHHhh--hcC-CCe-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhccCCCC
Q 012326 290 PGVLFIDEVHMLD---VECFSFLNRALE--NEM-API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIISTKPYT 360 (466)
Q Consensus 290 ~~vl~iDEi~~l~---~~~~~~L~~~le--~~~-~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~~~pl~ 360 (466)
+.|++|||+|.+. .+.+..|.+..+ ... .++ +|+++|... .+..+.+.+.+|| ..+.|+||+
T Consensus 130 ~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~---------~~~~l~~~~~s~~~~~~i~f~p~~ 200 (365)
T TIGR02928 130 SLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLK---------FRENLDPRVKSSLCEEEIIFPPYD 200 (365)
T ss_pred eEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcc---------hHhhcCHHHhccCCcceeeeCCCC
Confidence 5689999999993 345666666622 222 344 677777510 0135667788888 468999999
Q ss_pred HHHHHHHHHHHHhhc--CCccCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHH--
Q 012326 361 RDEIRKILDIRCQEE--DVEMAEDAKQLLTRVGE--GTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQ-- 434 (466)
Q Consensus 361 ~~el~~iL~~~~~~~--~~~i~~~~l~~l~~~a~--~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~-- 434 (466)
.+|+.+||..+++.. ...++++++++++.++. .||+|.++++|+.|...|..++...||.++|+.+........
T Consensus 201 ~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~ 280 (365)
T TIGR02928 201 AEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLL 280 (365)
T ss_pred HHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999998632 34689999998877652 499999999999999888878888999999999887542211
Q ss_pred HHHHHHHHHHHHHH
Q 012326 435 RSTQYLMEYQSQYI 448 (466)
Q Consensus 435 ~~~~~~~~~~~~~~ 448 (466)
...+.+..+++..+
T Consensus 281 ~~i~~l~~~~~~~l 294 (365)
T TIGR02928 281 ELIRGLPTHSKLVL 294 (365)
T ss_pred HHHHcCCHHHHHHH
Confidence 13344555666443
No 75
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.1e-19 Score=179.52 Aligned_cols=243 Identities=21% Similarity=0.273 Sum_probs=171.3
Q ss_pred CCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCC--c-eEeeeccceecc
Q 012326 31 SSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLET--P-FAMISGSEIFSL 107 (466)
Q Consensus 31 ~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~--p-~~~i~~~~~~~~ 107 (466)
+...|.+.++.+.+++...+++..++..+..|..| .++++|||||||||++++.+++++.... . ++++||..
T Consensus 8 ~vl~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~---- 82 (366)
T COG1474 8 DVLLEDYIPEELPHREEEINQLASFLAPALRGERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLE---- 82 (366)
T ss_pred cccCCCCCcccccccHHHHHHHHHHHHHHhcCCCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeee----
Confidence 34567777788999999999999888777766665 6799999999999999999999887531 1 45555532
Q ss_pred cCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCC
Q 012326 108 EMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSG 187 (466)
Q Consensus 108 e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
..+.+.+...+++++.
T Consensus 83 ---------------------------------------------------------~~t~~~i~~~i~~~~~------- 98 (366)
T COG1474 83 ---------------------------------------------------------LRTPYQVLSKILNKLG------- 98 (366)
T ss_pred ---------------------------------------------------------CCCHHHHHHHHHHHcC-------
Confidence 2334444444444441
Q ss_pred CeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchhH
Q 012326 188 DVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRA 267 (466)
Q Consensus 188 d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~~ 267 (466)
+.|. .+....
T Consensus 99 -----------------------------------~~p~-----------------------------------~g~~~~ 108 (366)
T COG1474 99 -----------------------------------KVPL-----------------------------------TGDSSL 108 (366)
T ss_pred -----------------------------------CCCC-----------------------------------CCCchH
Confidence 0010 000112
Q ss_pred HHHHHHHHHHHHHHhhcccccccceeeeeccccccHH---HHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCC
Q 012326 268 EVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVE---CFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGI 343 (466)
Q Consensus 268 ~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~---~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l 343 (466)
++-+.+. ....+.++ .-|++|||+|.|... .++.|.+........+ +|.++|.-.+ ...+
T Consensus 109 ~~~~~l~---~~~~~~~~----~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~---------~~~l 172 (366)
T COG1474 109 EILKRLY---DNLSKKGK----TVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKF---------LDYL 172 (366)
T ss_pred HHHHHHH---HHHHhcCC----eEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHH---------HHHh
Confidence 2222222 22223344 568999999999665 5666666655553333 6666665110 1355
Q ss_pred ChhHHhhh--hhhccCCCCHHHHHHHHHHHHhhc--CCccCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhhcCCc
Q 012326 344 PMDLLDRL--LIISTKPYTRDEIRKILDIRCQEE--DVEMAEDAKQLLTRVGE--GTSLRYAIHLITAAALASQKRKGKV 417 (466)
Q Consensus 344 ~~~llsR~--~~i~~~pl~~~el~~iL~~~~~~~--~~~i~~~~l~~l~~~a~--~g~~R~ai~lL~~a~~~a~~~~~~~ 417 (466)
.+.+.|++ ..+.|+||+.+|+.+||..+++.. ...++++++++++..++ .||+|.|+.+|+.|+..|+.++.+.
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~ 252 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRK 252 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCC
Confidence 56677777 457899999999999999999854 56899999999997753 4799999999999999999999999
Q ss_pred cCHHHHHHHHH
Q 012326 418 VEVQDIDRVYR 428 (466)
Q Consensus 418 It~~~v~~~~~ 428 (466)
++.++|+.+..
T Consensus 253 v~~~~v~~a~~ 263 (366)
T COG1474 253 VSEDHVREAQE 263 (366)
T ss_pred cCHHHHHHHHH
Confidence 99999999954
No 76
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.83 E-value=1.3e-19 Score=176.94 Aligned_cols=115 Identities=24% Similarity=0.317 Sum_probs=87.5
Q ss_pred cceeeeecccccc--------HHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhh-hhhccCCCC
Q 012326 290 PGVLFIDEVHMLD--------VECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIISTKPYT 360 (466)
Q Consensus 290 ~~vl~iDEi~~l~--------~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~~~pl~ 360 (466)
.+||||||+|.|. .+.++.|++.+++...+++++.+... ........++++|++|| ..++|++|+
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~------~~~~~~~~~~p~L~sRf~~~i~f~~~~ 179 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYS------DEMDYFLSLNPGLRSRFPISIDFPDYT 179 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCc------chhHHHHhcChHHHhccceEEEECCCC
Confidence 4699999999975 35678888888886665543333220 00011235678999999 679999999
Q ss_pred HHHHHHHHHHHHhhcCCccCHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHHH
Q 012326 361 RDEIRKILDIRCQEEDVEMAEDAKQLLTRVG---------EGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 361 ~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a---------~~g~~R~ai~lL~~a~~~a 410 (466)
.+++.++++..+...+..+++++++++++.. ..||.|.+.++++.|....
T Consensus 180 ~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~ 238 (261)
T TIGR02881 180 VEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQ 238 (261)
T ss_pred HHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999988999999999986541 2499999999999876443
No 77
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.83 E-value=1.1e-18 Score=164.88 Aligned_cols=147 Identities=19% Similarity=0.263 Sum_probs=120.8
Q ss_pred cccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHH
Q 012326 288 IVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRK 366 (466)
Q Consensus 288 ~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~ 366 (466)
...+|++|.|+|.|+.+++.+|.+++|.+...+ +|+++|. .+.+.++++|||+.++++.++++|+..
T Consensus 126 r~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns------------~SriIepIrSRCl~iRvpaps~eeI~~ 193 (351)
T KOG2035|consen 126 RPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNS------------TSRIIEPIRSRCLFIRVPAPSDEEITS 193 (351)
T ss_pred cceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecC------------cccchhHHhhheeEEeCCCCCHHHHHH
Confidence 347899999999999999999999999999888 9999986 789999999999999999999999999
Q ss_pred HHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--hcCCccCHH----HHHHHHHHHHhHHHHHHHH
Q 012326 367 ILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQK--RKGKVVEVQ----DIDRVYRLFLDVQRSTQYL 440 (466)
Q Consensus 367 iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~--~~~~~It~~----~v~~~~~~~~~~~~~~~~~ 440 (466)
++...++++++.++.+.+..|++.+ +||+|.|+-+|+.++..-.. .....|..- -+.+........+.+.+++
T Consensus 194 vl~~v~~kE~l~lp~~~l~rIa~kS-~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~ 272 (351)
T KOG2035|consen 194 VLSKVLKKEGLQLPKELLKRIAEKS-NRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLL 272 (351)
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHh-cccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHH
Confidence 9999999999999999999999999 59999999999988643221 111222221 3455556666666666666
Q ss_pred HHHHHHH
Q 012326 441 MEYQSQY 447 (466)
Q Consensus 441 ~~~~~~~ 447 (466)
.--.+.|
T Consensus 273 ~vR~~LY 279 (351)
T KOG2035|consen 273 EVRGRLY 279 (351)
T ss_pred HHHHHHH
Confidence 6666666
No 78
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.83 E-value=1.8e-18 Score=178.60 Aligned_cols=154 Identities=20% Similarity=0.192 Sum_probs=115.0
Q ss_pred cceeeeecccccc----HHHHHHHHHHhhhcC-CCe-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhccCCCCH
Q 012326 290 PGVLFIDEVHMLD----VECFSFLNRALENEM-API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIISTKPYTR 361 (466)
Q Consensus 290 ~~vl~iDEi~~l~----~~~~~~L~~~le~~~-~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~~~pl~~ 361 (466)
+.|++|||+|.+. .+.+..|.+..+... .++ +|+++|... .+..+.+.+.+|+ ..+.|.||+.
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~---------~~~~l~~~~~s~~~~~~i~f~py~~ 209 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT---------FLYILDPRVKSVFRPEEIYFPPYTA 209 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc---------hhhhcCHHHHhcCCcceeecCCCCH
Confidence 5689999999986 456777777665433 244 667776411 0134566677777 5689999999
Q ss_pred HHHHHHHHHHHhhc--CCccCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhH--HH
Q 012326 362 DEIRKILDIRCQEE--DVEMAEDAKQLLTRVGE--GTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDV--QR 435 (466)
Q Consensus 362 ~el~~iL~~~~~~~--~~~i~~~~l~~l~~~a~--~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~--~~ 435 (466)
+++.+|+..++... ...+++++++.+++.+. .||+|.++++|..|+..|...+...|+.+||+.+....... ..
T Consensus 210 ~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~ 289 (394)
T PRK00411 210 DEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSE 289 (394)
T ss_pred HHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999998654 34689999999998872 39999999999999988888888999999999998765221 22
Q ss_pred HHHHHHHHHHHHHhhhh
Q 012326 436 STQYLMEYQSQYINEVT 452 (466)
Q Consensus 436 ~~~~~~~~~~~~~~~~~ 452 (466)
..+.+..+++.++-...
T Consensus 290 ~~~~L~~~~k~~L~ai~ 306 (394)
T PRK00411 290 VLRTLPLHEKLLLRAIV 306 (394)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 35667777887764443
No 79
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=3.5e-19 Score=182.41 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=84.5
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|+||||+|.|+...++.|++++|+++..+ ||++|++ +..++++++|||..+.|.|++.+++.++|
T Consensus 118 ~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~------------~~~llpTIrSRc~~i~f~~~~~~~i~~~L 185 (394)
T PRK07940 118 WRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS------------PEDVLPTIRSRCRHVALRTPSVEAVAEVL 185 (394)
T ss_pred cEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC------------hHHChHHHHhhCeEEECCCCCHHHHHHHH
Confidence 6799999999999999999999999987655 8888875 88999999999999999999999999998
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLIT 404 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~ 404 (466)
... ..++++.+..++..+ +|+++.|+.++.
T Consensus 186 ~~~-----~~~~~~~a~~la~~s-~G~~~~A~~l~~ 215 (394)
T PRK07940 186 VRR-----DGVDPETARRAARAS-QGHIGRARRLAT 215 (394)
T ss_pred HHh-----cCCCHHHHHHHHHHc-CCCHHHHHHHhc
Confidence 742 236788899999998 599998887753
No 80
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=7.4e-19 Score=175.34 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=87.2
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILD 369 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL~ 369 (466)
++|++||++|.|+..+.++|++++|+|+..+||++|+. +..++++++|||..++|.|++.+++.++|.
T Consensus 125 ~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~------------~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~ 192 (314)
T PRK07399 125 RKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPS------------PESLLPTIVSRCQIIPFYRLSDEQLEQVLK 192 (314)
T ss_pred ceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECC------------hHhCcHHHHhhceEEecCCCCHHHHHHHHH
Confidence 68999999999999999999999999985568899876 889999999999999999999999999999
Q ss_pred HHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012326 370 IRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAA 407 (466)
Q Consensus 370 ~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~ 407 (466)
.....++... ....++..+ +|+++.|+++++...
T Consensus 193 ~~~~~~~~~~---~~~~l~~~a-~Gs~~~al~~l~~~~ 226 (314)
T PRK07399 193 RLGDEEILNI---NFPELLALA-QGSPGAAIANIEQLQ 226 (314)
T ss_pred Hhhccccchh---HHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 8754333222 256778888 699999999987643
No 81
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.82 E-value=8.8e-19 Score=179.87 Aligned_cols=235 Identities=19% Similarity=0.213 Sum_probs=173.7
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHHH--------HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQMI--------KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~l--------~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
-.|...|+||.|.+.+++.+...+... ..|..+++++||+||||||||++|+++|++++ .+|+.+.++.+
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~fi~i~~s~l 215 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATFIRVVGSEF 215 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCEEEEehHHH
Confidence 367777799999999999999887641 12666789999999999999999999999998 78999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcc
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEK 183 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
...+.++.+ .++++|..+.. .+|++||+||+|++...+.....|
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~-------------------------------- 260 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTG-------------------------------- 260 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCC--------------------------------
Confidence 888888877 78888877654 359999999999986554211110
Q ss_pred cCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCcc
Q 012326 184 VQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTG 263 (466)
Q Consensus 184 ~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ 263 (466)
.
T Consensus 261 -----------------------------------------------------------------------------~-- 261 (398)
T PTZ00454 261 -----------------------------------------------------------------------------A-- 261 (398)
T ss_pred -----------------------------------------------------------------------------c--
Confidence 0
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhh--cCCC-eEEEEeccceeEeecccccCC
Q 012326 264 EIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALEN--EMAP-ILVVATNRGITRIRGTNYKSA 340 (466)
Q Consensus 264 ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~--~~~~-iiil~tn~~~~~~~~~~~~~~ 340 (466)
...++..+... +..++. ...+ .+|++||+ |
T Consensus 262 --d~~~~r~l~~L---------------------------------L~~ld~~~~~~~v~VI~aTN~------------~ 294 (398)
T PTZ00454 262 --DREVQRILLEL---------------------------------LNQMDGFDQTTNVKVIMATNR------------A 294 (398)
T ss_pred --cHHHHHHHHHH---------------------------------HHHhhccCCCCCEEEEEecCC------------c
Confidence 00000111111 111111 0112 37788887 8
Q ss_pred CCCChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCc
Q 012326 341 HGIPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKV 417 (466)
Q Consensus 341 ~~l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~ 417 (466)
..+++++++ |+ ..+.|++|+.++...|++..+...++.-+- -++.++..+.+-+.+.+..+++.|...|..+++..
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv-d~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~ 373 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV-DLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYV 373 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 899999887 77 668899999999999999888766554322 25666776655677888899999998888888889
Q ss_pred cCHHHHHHHHHHHH
Q 012326 418 VEVQDIDRVYRLFL 431 (466)
Q Consensus 418 It~~~v~~~~~~~~ 431 (466)
|+.+|+..++....
T Consensus 374 i~~~df~~A~~~v~ 387 (398)
T PTZ00454 374 ILPKDFEKGYKTVV 387 (398)
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999987653
No 82
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.81 E-value=9.6e-19 Score=185.77 Aligned_cols=233 Identities=22% Similarity=0.314 Sum_probs=170.9
Q ss_pred CcccccCCcCCcHHHHHHHHHHHHHHHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 34 EARDVSEGMVGQLPARKAAGVILQMIKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 34 ~p~~~~~~lvG~~~~k~~l~~~l~~l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
.|...|+|++|++++++.+..++..+.. |..+++++||+||||||||++|+++|.+++ .||+.++++.+.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~~~~i~~~~~~~ 126 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSISGSDFVE 126 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCeeeccHHHHHH
Confidence 5666679999999999999988876653 445568999999999999999999999998 8999999999988
Q ss_pred ccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccC
Q 012326 107 LEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQ 185 (466)
Q Consensus 107 ~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
.+.+... .++++|..+... .|++||+||+|++...+.....+
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~---~p~Il~iDEid~l~~~r~~~~~~---------------------------------- 169 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKN---APCIIFIDEIDAVGRQRGAGLGG---------------------------------- 169 (495)
T ss_pred HHhcccHHHHHHHHHHHHhc---CCCEEEEechhhhhhccccCcCC----------------------------------
Confidence 8877776 788999887653 59999999999986555321100
Q ss_pred CCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccch
Q 012326 186 SGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEI 265 (466)
Q Consensus 186 ~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei 265 (466)
+
T Consensus 170 --------------------------------------------------------------------------~----- 170 (495)
T TIGR01241 170 --------------------------------------------------------------------------G----- 170 (495)
T ss_pred --------------------------------------------------------------------------c-----
Confidence 0
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhh---hcCCCeEEEEeccceeEeecccccCCCC
Q 012326 266 RAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALE---NEMAPILVVATNRGITRIRGTNYKSAHG 342 (466)
Q Consensus 266 ~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le---~~~~~iiil~tn~~~~~~~~~~~~~~~~ 342 (466)
.......++. |+..++ ....-++|.+||+ |..
T Consensus 171 ~~~~~~~~~~---------------------------------lL~~~d~~~~~~~v~vI~aTn~------------~~~ 205 (495)
T TIGR01241 171 NDEREQTLNQ---------------------------------LLVEMDGFGTNTGVIVIAATNR------------PDV 205 (495)
T ss_pred cHHHHHHHHH---------------------------------HHhhhccccCCCCeEEEEecCC------------hhh
Confidence 0000001111 111111 1111246777776 788
Q ss_pred CChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccC
Q 012326 343 IPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVE 419 (466)
Q Consensus 343 l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It 419 (466)
+++++++ |+ ..+.+.+|+.++..+|++..+...... ++..+..++..+..-+.+.+.++++.|...+...++..|+
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~ 284 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEIT 284 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999987 66 568899999999999999888765443 3334677888774346777888888887777677788899
Q ss_pred HHHHHHHHHHH
Q 012326 420 VQDIDRVYRLF 430 (466)
Q Consensus 420 ~~~v~~~~~~~ 430 (466)
.+++..++...
T Consensus 285 ~~~l~~a~~~~ 295 (495)
T TIGR01241 285 MNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 83
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.5e-19 Score=187.28 Aligned_cols=214 Identities=20% Similarity=0.298 Sum_probs=166.7
Q ss_pred CCCCcccccCCcCCcHHHHHHHHHHHHHHH-------c-CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecc
Q 012326 31 SSLEARDVSEGMVGQLPARKAAGVILQMIK-------E-GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGS 102 (466)
Q Consensus 31 ~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~-------~-~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~ 102 (466)
....|...|.++.|.+.+++.+...+.... . +..+++++|||||||||||++|+++|.+++ .+|+.+.++
T Consensus 233 ~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~~~ 310 (494)
T COG0464 233 LFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVKGS 310 (494)
T ss_pred ccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEeeCH
Confidence 345667777999999999999988876531 1 566778999999999999999999999888 899999999
Q ss_pred ceecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhh-
Q 012326 103 EIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALG- 180 (466)
Q Consensus 103 ~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 180 (466)
++.+.|+++++ .++++|..|... +||+||+||+|++...++.+.++. ..+..+++.
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~---~p~iiFiDEiDs~~~~r~~~~~~~-------------------~~r~~~~lL~ 368 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKL---APSIIFIDEIDSLASGRGPSEDGS-------------------GRRVVGQLLT 368 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcC---CCcEEEEEchhhhhccCCCCCchH-------------------HHHHHHHHHH
Confidence 99999999999 899999999854 499999999999999987665430 023344442
Q ss_pred -hcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcch---------hhHHHHhhh
Q 012326 181 -KEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTL---------HEIDVINSR 250 (466)
Q Consensus 181 -~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l---------~~ld~~~~~ 250 (466)
-.++...+-+.|.++||+++.+++++.|++|||. ..++|.| +...|..++..+.- -+++.++..
T Consensus 369 ~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~----~i~v~~p--d~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~ 442 (494)
T COG0464 369 ELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDR----LIYVPLP--DLEERLEIFKIHLRDKKPPLAEDVDLEELAEI 442 (494)
T ss_pred HhcCCCccCceEEEecCCCccccCHhhcccCccce----EeecCCC--CHHHHHHHHHHHhcccCCcchhhhhHHHHHHH
Confidence 2346666778899999999999999999999999 6677777 66677777743222 345666677
Q ss_pred cccccccccCCccchhHHHHHHHHHHHHHH
Q 012326 251 TQGFLALFTGDTGEIRAEVREQIDTKVAEW 280 (466)
Q Consensus 251 ~~~~~~l~~~~~~ei~~~~r~~i~~~~~~~ 280 (466)
+.||++ .+|...++++....+...
T Consensus 443 t~~~sg------adi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 443 TEGYSG------ADIAALVREAALEALREA 466 (494)
T ss_pred hcCCCH------HHHHHHHHHHHHHHHHHh
Confidence 777654 666677776665555443
No 84
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.81 E-value=1.2e-18 Score=179.38 Aligned_cols=237 Identities=19% Similarity=0.229 Sum_probs=170.6
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHH-HH-------cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQM-IK-------EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~-l~-------~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
..|...|++|.|.+.+++.+...+.. +. -|..+++++||+||||||||++|+++|++++ .+|+.+.++.+
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~~i~v~~~~l 201 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATFIRVVGSEL 201 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CCEEEeehHHH
Confidence 45677789999999999999887754 21 2556779999999999999999999999998 78999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcc
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEK 183 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
.+.+.+..+ .++++|..+... .|++||+||+|++...+.....+
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~---~p~IlfiDEiD~l~~~r~~~~~~-------------------------------- 246 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREK---APSIIFIDEIDAIAAKRTDSGTS-------------------------------- 246 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhc---CCeEEEEechhhhhcccccCCCC--------------------------------
Confidence 888888777 778888776543 59999999999986655322110
Q ss_pred cCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCcc
Q 012326 184 VQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTG 263 (466)
Q Consensus 184 ~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ 263 (466)
+
T Consensus 247 ----------------------------------------------------------------------------~--- 247 (389)
T PRK03992 247 ----------------------------------------------------------------------------G--- 247 (389)
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCC
Q 012326 264 EIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGI 343 (466)
Q Consensus 264 ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l 343 (466)
...+...+...+ .+.+.+ .......+|.+||+ +..+
T Consensus 248 --~~~~~~~l~~lL------------------~~ld~~------------~~~~~v~VI~aTn~------------~~~l 283 (389)
T PRK03992 248 --DREVQRTLMQLL------------------AEMDGF------------DPRGNVKIIAATNR------------IDIL 283 (389)
T ss_pred --cHHHHHHHHHHH------------------Hhcccc------------CCCCCEEEEEecCC------------hhhC
Confidence 000111111100 000000 01112237778876 7788
Q ss_pred ChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCH
Q 012326 344 PMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEV 420 (466)
Q Consensus 344 ~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~ 420 (466)
++++++ |+ ..+.|++|+.++..+|++.++....+.-+ ..+..++..+.+-+.+.+-.++..|...|..++...|+.
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~-~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~ 362 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD-VDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTM 362 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc-CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 889886 77 57889999999999999988775544321 236677777754566777888888988887788889999
Q ss_pred HHHHHHHHHH
Q 012326 421 QDIDRVYRLF 430 (466)
Q Consensus 421 ~~v~~~~~~~ 430 (466)
+|+..|+...
T Consensus 363 ~d~~~A~~~~ 372 (389)
T PRK03992 363 EDFLKAIEKV 372 (389)
T ss_pred HHHHHHHHHH
Confidence 9999998755
No 85
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.81 E-value=1.6e-19 Score=173.86 Aligned_cols=126 Identities=15% Similarity=0.114 Sum_probs=107.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
.+.+++||+|.|...++++|.+..+.....+ |++++|. |..+.+++++||..++|.|++..+...++
T Consensus 132 fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~------------~~ki~pa~qsRctrfrf~pl~~~~~~~r~ 199 (360)
T KOG0990|consen 132 FKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNP------------PQKIHPAQQSRCTRFRFAPLTMAQQTERQ 199 (360)
T ss_pred eeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccC------------hhhcCchhhcccccCCCCCCChhhhhhHH
Confidence 6799999999999999999999999887776 8888886 88999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
.++|+.+...++++....++..+ .||+|.|++.|+.....-.......++.+.|..+.+
T Consensus 200 shi~e~e~~~~~~~~~~a~~r~s-~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g 258 (360)
T KOG0990|consen 200 SHIRESEQKETNPEGYSALGRLS-VGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKG 258 (360)
T ss_pred HHHHhcchhhcCHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcC
Confidence 99999999999999999999999 599999999999875444322223344455555544
No 86
>CHL00176 ftsH cell division protein; Validated
Probab=99.80 E-value=2.3e-18 Score=185.90 Aligned_cols=233 Identities=24% Similarity=0.337 Sum_probs=171.3
Q ss_pred CcccccCCcCCcHHHHHHHHHHHHHHHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 34 EARDVSEGMVGQLPARKAAGVILQMIKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 34 ~p~~~~~~lvG~~~~k~~l~~~l~~l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
.+...|+|++|.+++++.+..+++.++. |...++++||+||||||||++|+++|.+++ .||+.++++.+.+
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p~i~is~s~f~~ 254 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VPFFSISGSEFVE 254 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeeeccHHHHHH
Confidence 3445569999999999999999887764 233468999999999999999999999998 8999999999887
Q ss_pred ccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccC
Q 012326 107 LEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQ 185 (466)
Q Consensus 107 ~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
.+.+... .++.+|..+... .||+||+||+|++...+..+..+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~---~P~ILfIDEID~l~~~r~~~~~~---------------------------------- 297 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKEN---SPCIVFIDEIDAVGRQRGAGIGG---------------------------------- 297 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcC---CCcEEEEecchhhhhcccCCCCC----------------------------------
Confidence 7776655 788888887653 59999999999986555322111
Q ss_pred CCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccch
Q 012326 186 SGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEI 265 (466)
Q Consensus 186 ~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei 265 (466)
+
T Consensus 298 --------------------------------------------------------------------------~----- 298 (638)
T CHL00176 298 --------------------------------------------------------------------------G----- 298 (638)
T ss_pred --------------------------------------------------------------------------C-----
Confidence 0
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhh---cCCCeEEEEeccceeEeecccccCCCC
Q 012326 266 RAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALEN---EMAPILVVATNRGITRIRGTNYKSAHG 342 (466)
Q Consensus 266 ~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~---~~~~iiil~tn~~~~~~~~~~~~~~~~ 342 (466)
.+.....+ +.|+..++. ....++|.+||+ |..
T Consensus 299 ~~e~~~~L---------------------------------~~LL~~~dg~~~~~~ViVIaaTN~------------~~~ 333 (638)
T CHL00176 299 NDEREQTL---------------------------------NQLLTEMDGFKGNKGVIVIAATNR------------VDI 333 (638)
T ss_pred cHHHHHHH---------------------------------HHHHhhhccccCCCCeeEEEecCc------------hHh
Confidence 00000111 111111111 111247777776 777
Q ss_pred CChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccC
Q 012326 343 IPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVE 419 (466)
Q Consensus 343 l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It 419 (466)
+++++++ |+ ..+.+.+|+.++...||+.+++.... .++..+..++..+.+.+.+.+-+++..|+..+...+...||
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It 412 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATIT 412 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 8888886 45 67889999999999999998887432 24456788888875348888889999888777778888999
Q ss_pred HHHHHHHHHHH
Q 012326 420 VQDIDRVYRLF 430 (466)
Q Consensus 420 ~~~v~~~~~~~ 430 (466)
.++++.++...
T Consensus 413 ~~dl~~Ai~rv 423 (638)
T CHL00176 413 MKEIDTAIDRV 423 (638)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 87
>CHL00181 cbbX CbbX; Provisional
Probab=99.79 E-value=3e-18 Score=169.13 Aligned_cols=113 Identities=22% Similarity=0.253 Sum_probs=85.7
Q ss_pred cceeeeeccccc---------cHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhh-hhhccCCC
Q 012326 290 PGVLFIDEVHML---------DVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIISTKPY 359 (466)
Q Consensus 290 ~~vl~iDEi~~l---------~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~~~pl 359 (466)
.+||||||+|.+ ..+.+..|.+.+++....++|+++.... .......+.|+|++|| ..+.|+||
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~------~~~~~~~~np~L~sR~~~~i~F~~~ 196 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKD------RMDKFYESNPGLSSRIANHVDFPDY 196 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH------HHHHHHhcCHHHHHhCCceEEcCCc
Confidence 579999999987 4567888999998766555444443200 0001124468999999 67999999
Q ss_pred CHHHHHHHHHHHHhhcCCccCHHHHHHHHHhc-------CCCCHHHHHHHHHHHHH
Q 012326 360 TRDEIRKILDIRCQEEDVEMAEDAKQLLTRVG-------EGTSLRYAIHLITAAAL 408 (466)
Q Consensus 360 ~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a-------~~g~~R~ai~lL~~a~~ 408 (466)
+.+|+.+|+...+++.+..+++++...+.... .-||.|.+.++++.+..
T Consensus 197 t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 197 TPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred CHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999887777642 23889999999988763
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.79 E-value=4.7e-18 Score=172.71 Aligned_cols=98 Identities=14% Similarity=0.248 Sum_probs=85.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCC-CeEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMA-PILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~-~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.|+..++++|++++|++.. ++||++|++ +..++++++|||..+.|.|++.+++.++|
T Consensus 142 ~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~------------~~~llpti~SRc~~i~l~~l~~~~i~~~L 209 (365)
T PRK07471 142 WRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHA------------PARLLPTIRSRCRKLRLRPLAPEDVIDAL 209 (365)
T ss_pred CEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECC------------chhchHHhhccceEEECCCCCHHHHHHHH
Confidence 67999999999999999999999999875 458888876 77899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLIT 404 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~ 404 (466)
.... ...+++.+..++..+ +|+++.|+.+++
T Consensus 210 ~~~~----~~~~~~~~~~l~~~s-~Gsp~~Al~ll~ 240 (365)
T PRK07471 210 AAAG----PDLPDDPRAALAALA-EGSVGRALRLAG 240 (365)
T ss_pred HHhc----ccCCHHHHHHHHHHc-CCCHHHHHHHhc
Confidence 8742 345566667888888 599999999985
No 89
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.79 E-value=5e-18 Score=175.52 Aligned_cols=236 Identities=19% Similarity=0.220 Sum_probs=169.5
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHHH-H-------cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQMI-K-------EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~l-~-------~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
..|...|+||.|.+.+++.+..++... . -|..+++++||+||||||||++|+++|++++ .+|+.+.++++
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~fi~V~~seL 253 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATFLRVVGSEL 253 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCEEEEecchh
Confidence 345566699999999999999888642 2 2556779999999999999999999999997 67999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcc
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEK 183 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
...+.+... .++++|..+... .|+++|+||+|++...+.....|
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~---~P~ILfIDEID~l~~kR~~~~sg-------------------------------- 298 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEEN---APSIVFIDEIDAIGTKRYDATSG-------------------------------- 298 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhC---CCcEEeHHHHHHHhccCCCCCCc--------------------------------
Confidence 888888877 688888776653 59999999999986554322111
Q ss_pred cCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCcc
Q 012326 184 VQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTG 263 (466)
Q Consensus 184 ~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ 263 (466)
+
T Consensus 299 ----------------------------------------------------------------------------g--- 299 (438)
T PTZ00361 299 ----------------------------------------------------------------------------G--- 299 (438)
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCC
Q 012326 264 EIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGI 343 (466)
Q Consensus 264 ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l 343 (466)
...+...+...+ ..+... .....-.+|++||+ +..+
T Consensus 300 --~~e~qr~ll~LL-----------------------------~~Ldg~-~~~~~V~VI~ATNr------------~d~L 335 (438)
T PTZ00361 300 --EKEIQRTMLELL-----------------------------NQLDGF-DSRGDVKVIMATNR------------IESL 335 (438)
T ss_pred --cHHHHHHHHHHH-----------------------------HHHhhh-cccCCeEEEEecCC------------hHHh
Confidence 000000110000 000000 01112247788887 7788
Q ss_pred ChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccC
Q 012326 344 PMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAED-AKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVE 419 (466)
Q Consensus 344 ~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~-~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It 419 (466)
++++++ |+ ..|.|.+|+.++..+|++.++....+ +++ -++.++..+.+-+...+-.++..|+..|..+++..|+
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt 413 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL--AEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVT 413 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC--CcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccC
Confidence 888875 66 67899999999999999988765543 322 2455665554566677778889999999888889999
Q ss_pred HHHHHHHHHHH
Q 012326 420 VQDIDRVYRLF 430 (466)
Q Consensus 420 ~~~v~~~~~~~ 430 (466)
.+|+..|..-.
T Consensus 414 ~~D~~~A~~~v 424 (438)
T PTZ00361 414 QADFRKAKEKV 424 (438)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 90
>PRK04132 replication factor C small subunit; Provisional
Probab=99.79 E-value=2.4e-18 Score=188.89 Aligned_cols=120 Identities=22% Similarity=0.319 Sum_probs=107.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|+||||+|.|+..++++|++++|++...+ ||++||. ++.++++++|||..+.|.|++.+++..+|
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~------------~~kIi~tIrSRC~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY------------SSKIIEPIQSRCAIFRFRPLRDEDIAKRL 698 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCC------------hhhCchHHhhhceEEeCCCCCHHHHHHHH
Confidence 5799999999999999999999999987665 8899987 88999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
..+|+++++.++++++..++..+ +||+|.|+++|+.++... ..||.++|..+.
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s-~GDlR~AIn~Lq~~~~~~-----~~It~~~V~~~~ 751 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIA-EGDMRRAINILQAAAALD-----DKITDENVFLVA 751 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc-----CCCCHHHHHHHh
Confidence 99999999999999999999999 699999999999875332 357777766544
No 91
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.79 E-value=2.9e-18 Score=190.18 Aligned_cols=211 Identities=21% Similarity=0.312 Sum_probs=156.8
Q ss_pred CcccccCCcCCcHHHHHHHHHHHHH-------HH-cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecccee
Q 012326 34 EARDVSEGMVGQLPARKAAGVILQM-------IK-EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIF 105 (466)
Q Consensus 34 ~p~~~~~~lvG~~~~k~~l~~~l~~-------l~-~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~ 105 (466)
.|...|+++.|++.+|+.+...+.. +. .|..+++++|||||||||||++|+++|++++ .+|+.+.++++.
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~fi~v~~~~l~ 524 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANFIAVRGPEIL 524 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCEEEEehHHHh
Confidence 3455679999999999999887753 11 2556679999999999999999999999998 789999999999
Q ss_pred cccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhccc
Q 012326 106 SLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKV 184 (466)
Q Consensus 106 ~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (466)
+.++++++ .++++|..+... .||+||+||+|++.+.+.....+ .....+...++..+ +++
T Consensus 525 ~~~vGese~~i~~~f~~A~~~---~p~iifiDEid~l~~~r~~~~~~--------------~~~~~~~~~lL~~l--dg~ 585 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQA---APAIIFFDEIDAIAPARGARFDT--------------SVTDRIVNQLLTEM--DGI 585 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhc---CCEEEEEEChhhhhccCCCCCCc--------------cHHHHHHHHHHHHh--hcc
Confidence 99999998 899999888754 49999999999998877533221 00011122233333 344
Q ss_pred CCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhh----cch---hhHHHHhhhccccccc
Q 012326 185 QSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHC----VTL---HEIDVINSRTQGFLAL 257 (466)
Q Consensus 185 ~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~----~~l---~~ld~~~~~~~~~~~l 257 (466)
...+-+.|..+||+++.+++++.||+|||. ..++|.| +...|..++.. ..+ -+++.+...+.||++
T Consensus 586 ~~~~~v~vI~aTn~~~~ld~allRpgRfd~----~i~v~~P--d~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sg- 658 (733)
T TIGR01243 586 QELSNVVVIAATNRPDILDPALLRPGRFDR----LILVPPP--DEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTG- 658 (733)
T ss_pred cCCCCEEEEEeCCChhhCCHhhcCCCccce----EEEeCCc--CHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCH-
Confidence 455668899999999999999999999998 6778888 45677776632 222 256788888888865
Q ss_pred ccCCccchhHHHHHHHHHHH
Q 012326 258 FTGDTGEIRAEVREQIDTKV 277 (466)
Q Consensus 258 ~~~~~~ei~~~~r~~i~~~~ 277 (466)
.++..-++++....+
T Consensus 659 -----adi~~~~~~A~~~a~ 673 (733)
T TIGR01243 659 -----ADIEAVCREAAMAAL 673 (733)
T ss_pred -----HHHHHHHHHHHHHHH
Confidence 444455555544443
No 92
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.2e-18 Score=160.68 Aligned_cols=217 Identities=18% Similarity=0.236 Sum_probs=154.9
Q ss_pred CCCCCcccccCCcCCcHHHHHHHHHHHHH------H--HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeec
Q 012326 30 DSSLEARDVSEGMVGQLPARKAAGVILQM------I--KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISG 101 (466)
Q Consensus 30 ~~~~~p~~~~~~lvG~~~~k~~l~~~l~~------l--~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~ 101 (466)
.+..+|.....|+-|.+-.|+.+.+.++. + .-|..|++++|+|||||||||.+|+++|+... ..|+.+.+
T Consensus 145 ~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~--a~firvvg 222 (408)
T KOG0727|consen 145 GPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVG 222 (408)
T ss_pred CCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc--hheeeecc
Confidence 34456766668999999999999888764 1 23788899999999999999999999999887 78999999
Q ss_pred cceecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhh
Q 012326 102 SEIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALG 180 (466)
Q Consensus 102 ~~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 180 (466)
++|+..+.++.- -+++.|+.|.. +.|+|||+||+|+++..|--...|+. .....+.-.+++++
T Consensus 223 sefvqkylgegprmvrdvfrlake---napsiifideidaiatkrfdaqtgad------------revqril~ellnqm- 286 (408)
T KOG0727|consen 223 SEFVQKYLGEGPRMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQTGAD------------REVQRILIELLNQM- 286 (408)
T ss_pred HHHHHHHhccCcHHHHHHHHHHhc---cCCcEEEeehhhhHhhhhcccccccc------------HHHHHHHHHHHHhc-
Confidence 999999999987 78889987765 45999999999999876622111100 11223334455555
Q ss_pred hcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcc----hh---hHHHHhhhccc
Q 012326 181 KEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVT----LH---EIDVINSRTQG 253 (466)
Q Consensus 181 ~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~----l~---~ld~~~~~~~~ 253 (466)
.|...+--+-|..+||+.+-+++++.||+|+|+ ....|+|+. ..++-++..++ |. |++.+-+++..
T Consensus 287 -dgfdq~~nvkvimatnradtldpallrpgrldr----kiefplpdr--rqkrlvf~titskm~ls~~vdle~~v~rpdk 359 (408)
T KOG0727|consen 287 -DGFDQTTNVKVIMATNRADTLDPALLRPGRLDR----KIEFPLPDR--RQKRLVFSTITSKMNLSDEVDLEDLVARPDK 359 (408)
T ss_pred -cCcCcccceEEEEecCcccccCHhhcCCccccc----cccCCCCch--hhhhhhHHhhhhcccCCcccCHHHHhcCccc
Confidence 455566668889999999999999999999999 334556654 22233333332 22 56666676665
Q ss_pred ccccccCCccchhHHHHHHHHHHH
Q 012326 254 FLALFTGDTGEIRAEVREQIDTKV 277 (466)
Q Consensus 254 ~~~l~~~~~~ei~~~~r~~i~~~~ 277 (466)
.++ .+|...++++=...+
T Consensus 360 is~------adi~aicqeagm~av 377 (408)
T KOG0727|consen 360 ISG------ADINAICQEAGMLAV 377 (408)
T ss_pred cch------hhHHHHHHHHhHHHH
Confidence 543 445555555543333
No 93
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.3e-18 Score=161.18 Aligned_cols=208 Identities=17% Similarity=0.258 Sum_probs=149.8
Q ss_pred cccccCCCCCCCCCcccccCCcCCcHHHHHHHHHHHHH-------H-HcCCCCCceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 21 HSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQM-------I-KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~-------l-~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
-|.++++.+++ +|....+|+-|.+..++.+.+++-. + .-|..||+++|+|||||||||.+|+++|-..+
T Consensus 154 DsrVkaMevDe--kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~- 230 (424)
T KOG0652|consen 154 DSRVKAMEVDE--KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN- 230 (424)
T ss_pred hhhcceeeecc--CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc-
Confidence 35566777764 5655557999999888877554421 2 23778899999999999999999999998887
Q ss_pred CCceEeeeccceecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCC-CCCceeeEEEeeeccchhHhh
Q 012326 93 ETPFAMISGSEIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATS-GAAAKTGKLTLKTTEMETVYD 170 (466)
Q Consensus 93 ~~p~~~i~~~~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~-~g~~~~~~~~l~~~~~~~~~~ 170 (466)
..|..+.+..++.++++... .++++|.-|.. +.|+|||+||+|++...|--.. .| . ..+..
T Consensus 231 -aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKE---kaP~IIFIDElDAIGtKRfDSek~G-D------------REVQR 293 (424)
T KOG0652|consen 231 -ATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKAG-D------------REVQR 293 (424)
T ss_pred -chHHHhcchHHHhhhhcchHHHHHHHHHHhhc---cCCeEEEEechhhhccccccccccc-c------------HHHHH
Confidence 67888999999999999998 78888877665 3599999999999976663221 11 0 00111
Q ss_pred hhhHHHHHhhhcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchh-------h
Q 012326 171 LGGKMIEALGKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLH-------E 243 (466)
Q Consensus 171 ~~~~~~~~~~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~-------~ 243 (466)
---.+++++ .+....+-|-|.++||+++.+++++.|.+|+|+ -+++|.++-..|+.+.+.++-+ .
T Consensus 294 TMLELLNQL--DGFss~~~vKviAATNRvDiLDPALlRSGRLDR------KIEfP~Pne~aRarIlQIHsRKMnv~~DvN 365 (424)
T KOG0652|consen 294 TMLELLNQL--DGFSSDDRVKVIAATNRVDILDPALLRSGRLDR------KIEFPHPNEEARARILQIHSRKMNVSDDVN 365 (424)
T ss_pred HHHHHHHhh--cCCCCccceEEEeecccccccCHHHhhcccccc------cccCCCCChHHHHHHHHHhhhhcCCCCCCC
Confidence 112244444 677788899999999999999999999999999 3444555666777776433221 2
Q ss_pred HHHHhhhcccccc
Q 012326 244 IDVINSRTQGFLA 256 (466)
Q Consensus 244 ld~~~~~~~~~~~ 256 (466)
++.++..|.+|.+
T Consensus 366 feELaRsTddFNG 378 (424)
T KOG0652|consen 366 FEELARSTDDFNG 378 (424)
T ss_pred HHHHhhcccccCc
Confidence 3455555555544
No 94
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=1.1e-17 Score=165.01 Aligned_cols=114 Identities=21% Similarity=0.253 Sum_probs=87.6
Q ss_pred cceeeeeccccc---------cHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhh-hhhccCCC
Q 012326 290 PGVLFIDEVHML---------DVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIISTKPY 359 (466)
Q Consensus 290 ~~vl~iDEi~~l---------~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~~~pl 359 (466)
.+||||||++.+ ..+.+..|++.+++....++++++.... .......+.++|++|| ..++|+||
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~------~~~~~~~~np~L~sR~~~~i~fp~l 195 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD------RMDSFFESNPGFSSRVAHHVDFPDY 195 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH------HHHHHHhhCHHHHhhCCcEEEeCCc
Confidence 579999999987 3466888999998766555444443200 0001134578999999 67999999
Q ss_pred CHHHHHHHHHHHHhhcCCccCHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHH
Q 012326 360 TRDEIRKILDIRCQEEDVEMAEDAKQLLTRV-------GEGTSLRYAIHLITAAALA 409 (466)
Q Consensus 360 ~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~-------a~~g~~R~ai~lL~~a~~~ 409 (466)
+.+++..++...+++.+..+++++++.+.+. ...||+|.+.++++.+...
T Consensus 196 ~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 196 SEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred CHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 9999999999999998899999999998876 2249999999999987633
No 95
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.1e-18 Score=158.73 Aligned_cols=180 Identities=18% Similarity=0.249 Sum_probs=140.1
Q ss_pred CcccccCCcCCcHHHHHHHHHHHHH-------HHc-CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecccee
Q 012326 34 EARDVSEGMVGQLPARKAAGVILQM-------IKE-GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIF 105 (466)
Q Consensus 34 ~p~~~~~~lvG~~~~k~~l~~~l~~-------l~~-~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~ 105 (466)
-|.+..+-+-|.+..++.++++++. +.. |...|+++|||||||||||.+|+++|++..| -|+.+++++++
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c--~firvsgselv 218 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--TFIRVSGSELV 218 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce--EEEEechHHHH
Confidence 3555546677889999999888764 222 6666799999999999999999999999884 59999999999
Q ss_pred cccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhccc
Q 012326 106 SLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKV 184 (466)
Q Consensus 106 ~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (466)
..++++.. -++++|-+|.... |+|||.||||++...|..+++|..+. ...---.+++++ .+.
T Consensus 219 qk~igegsrmvrelfvmareha---psiifmdeidsigs~r~e~~~ggdse------------vqrtmlellnql--dgf 281 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHA---PSIIFMDEIDSIGSSRVESGSGGDSE------------VQRTMLELLNQL--DGF 281 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcC---CceEeeecccccccccccCCCCccHH------------HHHHHHHHHHhc--ccc
Confidence 99999998 7999998887654 99999999999988776554431110 111112234444 455
Q ss_pred CCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhh
Q 012326 185 QSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHC 238 (466)
Q Consensus 185 ~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~ 238 (466)
+...-|-|..+||+++.+|+++.||+|+|+ -+++|.++...|.+++.-
T Consensus 282 eatknikvimatnridild~allrpgridr------kiefp~p~e~ar~~ilki 329 (404)
T KOG0728|consen 282 EATKNIKVIMATNRIDILDPALLRPGRIDR------KIEFPPPNEEARLDILKI 329 (404)
T ss_pred ccccceEEEEeccccccccHhhcCCCcccc------cccCCCCCHHHHHHHHHH
Confidence 555668899999999999999999999999 567777788888888753
No 96
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.76 E-value=4.1e-17 Score=166.88 Aligned_cols=233 Identities=21% Similarity=0.246 Sum_probs=160.5
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHHH-H-------cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQMI-K-------EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~l-~-------~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
..|...++++.|.+.+++.+...+... . -|..+++++||+||||||||++|+++|+.++ .+|+.+.++.+
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~~~v~~~~l 192 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATFIRVVGSEL 192 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCEEecchHHH
Confidence 457777899999999999998877542 2 2455679999999999999999999999998 67888888777
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcc
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEK 183 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
...+.+... .+.++|..+.. ..|++||+||+|.+...+.....+
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~-------------------------------- 237 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTS-------------------------------- 237 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCC--------------------------------
Confidence 776666665 56666665543 247888888888875443211100
Q ss_pred cCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCcc
Q 012326 184 VQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTG 263 (466)
Q Consensus 184 ~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ 263 (466)
+
T Consensus 238 ----------------------------------------------------------------------------~--- 238 (364)
T TIGR01242 238 ----------------------------------------------------------------------------G--- 238 (364)
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhh--cCCCe-EEEEeccceeEeecccccCC
Q 012326 264 EIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALEN--EMAPI-LVVATNRGITRIRGTNYKSA 340 (466)
Q Consensus 264 ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~--~~~~i-iil~tn~~~~~~~~~~~~~~ 340 (466)
.......+ ..++..++. ...++ +|++||+ +
T Consensus 239 --~~~~~~~l---------------------------------~~ll~~ld~~~~~~~v~vI~ttn~------------~ 271 (364)
T TIGR01242 239 --DREVQRTL---------------------------------MQLLAELDGFDPRGNVKVIAATNR------------P 271 (364)
T ss_pred --cHHHHHHH---------------------------------HHHHHHhhCCCCCCCEEEEEecCC------------h
Confidence 00000011 111111111 12234 7777876 6
Q ss_pred CCCChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCc
Q 012326 341 HGIPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKV 417 (466)
Q Consensus 341 ~~l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~ 417 (466)
..+++++++ || ..+.+++|+.++..+|+...+......-+ .-+..++..+.+-+.+.+..++..|...|..+++..
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~-~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED-VDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc-CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 788888885 66 56889999999999999987765433211 236677777744456677778888888887888899
Q ss_pred cCHHHHHHHHHH
Q 012326 418 VEVQDIDRVYRL 429 (466)
Q Consensus 418 It~~~v~~~~~~ 429 (466)
|+.+|+..++.-
T Consensus 351 i~~~d~~~a~~~ 362 (364)
T TIGR01242 351 VTMDDFIKAVEK 362 (364)
T ss_pred cCHHHHHHHHHH
Confidence 999999998753
No 97
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.5e-17 Score=160.73 Aligned_cols=103 Identities=23% Similarity=0.306 Sum_probs=87.5
Q ss_pred ccCCcCCcHHHHHHHHHHHHH-------HHcC--CCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceeccc
Q 012326 38 VSEGMVGQLPARKAAGVILQM-------IKEG--KIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE 108 (466)
Q Consensus 38 ~~~~lvG~~~~k~~l~~~l~~-------l~~~--~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e 108 (466)
.|+|+-|.+.++++++..+-. +..| ..|++++||+||||||||.+|+++|++.+ .+|+.+..+.+.+.|
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag--a~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG--ANFINVSVSNLTSKW 167 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC--CCcceeeccccchhh
Confidence 459999999999999877643 2122 23679999999999999999999999999 789999999999999
Q ss_pred CCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccC
Q 012326 109 MSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDR 145 (466)
Q Consensus 109 ~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~ 145 (466)
+++.+ .+.-+|.-+..+ +|++||+||+|++-..|
T Consensus 168 fgE~eKlv~AvFslAsKl---~P~iIFIDEvds~L~~R 202 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKL---QPSIIFIDEVDSFLGQR 202 (386)
T ss_pred HHHHHHHHHHHHhhhhhc---CcceeehhhHHHHHhhc
Confidence 99999 677777777755 49999999999986666
No 98
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.75 E-value=1.8e-16 Score=158.91 Aligned_cols=97 Identities=12% Similarity=0.186 Sum_probs=83.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++||++|.|+.++.++|++++|+|+..+ ||++|+. +..++++++|||..+.|.+++.+++..+|
T Consensus 94 ~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~------------~~~ll~TI~SRc~~~~~~~~~~~~~~~~l 161 (313)
T PRK05564 94 KKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCEN------------LEQILDTIKSRCQIYKLNRLSKEEIEKFI 161 (313)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC------------hHhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 6799999999999999999999999988755 7777765 78999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLI 403 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL 403 (466)
..... .++++.++.++..+ +|++..|..++
T Consensus 162 ~~~~~----~~~~~~~~~l~~~~-~g~~~~a~~~~ 191 (313)
T PRK05564 162 SYKYN----DIKEEEKKSAIAFS-DGIPGKVEKFI 191 (313)
T ss_pred HHHhc----CCCHHHHHHHHHHc-CCCHHHHHHHh
Confidence 87543 57888888888888 48787776554
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.75 E-value=1.4e-16 Score=153.11 Aligned_cols=124 Identities=20% Similarity=0.302 Sum_probs=96.2
Q ss_pred ceeeeeccccccH--HH----HHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCC---CChhHHhhh---hhhccCC
Q 012326 291 GVLFIDEVHMLDV--EC----FSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHG---IPMDLLDRL---LIISTKP 358 (466)
Q Consensus 291 ~vl~iDEi~~l~~--~~----~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~---l~~~llsR~---~~i~~~p 358 (466)
.+++|||+|.+.. +. +..++...+.. ...+|++++. +|.. +.++|+||| .++.+.|
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g-~~~li~ts~~-----------~p~~l~~~~~~L~SRl~~g~~~~l~~ 166 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESG-RTRLLITGDR-----------PPRQLNLGLPDLASRLDWGQIYKLQP 166 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcC-CCeEEEeCCC-----------ChHHcCcccHHHHHHHhCCceeeecC
Confidence 4899999999843 22 34444444432 2245566654 2433 578999999 8999999
Q ss_pred CCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 359 YTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 359 l~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
++.+++..+|+.++...++.++++++++|+..+ .||+|.+.++|+.....+ ...+..||.+.++++..
T Consensus 167 ~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~-~~d~r~l~~~l~~l~~~~-l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 167 LSDEEKLQALQLRARLRGFELPEDVGRFLLKRL-DREMRTLFMTLDQLDRAS-ITAQRKLTIPFVKEILK 234 (235)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhh-cCCHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHc
Confidence 999999999999899889999999999999998 599999999999975333 34456799999998764
No 100
>PRK06893 DNA replication initiation factor; Validated
Probab=99.74 E-value=1.8e-16 Score=151.85 Aligned_cols=126 Identities=13% Similarity=0.192 Sum_probs=94.7
Q ss_pred cceeeeecccccc--HHHHHHHHHHhh---hcCCCeEEEEeccceeEeecccccCCCC---CChhHHhhhh---hhccCC
Q 012326 290 PGVLFIDEVHMLD--VECFSFLNRALE---NEMAPILVVATNRGITRIRGTNYKSAHG---IPMDLLDRLL---IISTKP 358 (466)
Q Consensus 290 ~~vl~iDEi~~l~--~~~~~~L~~~le---~~~~~iiil~tn~~~~~~~~~~~~~~~~---l~~~llsR~~---~i~~~p 358 (466)
..+++|||+|.+. .+....|...+. +...++++++++. .|.. ..+++.||+. .+++.+
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~-----------~p~~l~~~~~~L~sRl~~g~~~~l~~ 160 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC-----------SPHALSIKLPDLASRLTWGEIYQLND 160 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC-----------ChHHccccchhHHHHHhcCCeeeCCC
Confidence 4599999999874 222223333332 2233455666654 2433 3479999994 889999
Q ss_pred CCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 359 YTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 359 l~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
|+.++...+|+..+...++.++++++++|++.+ .||+|.+.++++.....+ ...+..||.+.+++++.
T Consensus 161 pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~-~~d~r~l~~~l~~l~~~~-~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 161 LTDEQKIIVLQRNAYQRGIELSDEVANFLLKRL-DRDMHTLFDALDLLDKAS-LQAQRKLTIPFVKEILG 228 (229)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHhc
Confidence 999999999999999999999999999999998 599999999999875433 34345799999998763
No 101
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.74 E-value=2.2e-17 Score=163.80 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=113.1
Q ss_pred CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHH-HHHHHHHHHHcc--cccCceEEEEcce
Q 012326 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTE-ALMQAFRKAIGV--RIKEEAEVIEGEV 138 (466)
Q Consensus 62 ~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~-~l~~~~~~a~~~--~~~~~~ii~~dEi 138 (466)
+..+|.+++|+||||||||.+|+++|++++ ++|+.++++++.+.++++++ .++++|+.|... ...+||+||+|||
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg--~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMG--IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcC--CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 455679999999999999999999999999 78999999999999999999 899999988754 2347999999999
Q ss_pred eeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhh------c----ccCCCCeEEEEccCCCcccccccccc
Q 012326 139 VEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGK------E----KVQSGDVIAIDKVSGKITKLGRSFSR 208 (466)
Q Consensus 139 d~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~----~~~~~d~i~i~~~t~~~~~~~~~~~r 208 (466)
|++++.+......... .-+...+.+.+.. . .......|.|..+||+++.+++++.|
T Consensus 222 DA~~g~r~~~~~tv~~--------------qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlR 287 (413)
T PLN00020 222 DAGAGRFGTTQYTVNN--------------QMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIR 287 (413)
T ss_pred hhcCCCCCCCCcchHH--------------HHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcC
Confidence 9999887532221000 0001122222110 0 01223347888999999999999999
Q ss_pred cccccccCCceeeecCCChhHHhHHHhhh
Q 012326 209 SRDYDAMGPHTKFVQCPDGELQKRKEVVH 237 (466)
Q Consensus 209 ~~~~d~~~~~~~~i~~p~~~~~~r~~~~~ 237 (466)
++|||. ++.+|+ ...|..|++
T Consensus 288 pGRfDk------~i~lPd--~e~R~eIL~ 308 (413)
T PLN00020 288 DGRMEK------FYWAPT--REDRIGVVH 308 (413)
T ss_pred CCCCCc------eeCCCC--HHHHHHHHH
Confidence 999998 345674 456777765
No 102
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.74 E-value=8.8e-17 Score=161.71 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCC
Q 012326 266 RAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIP 344 (466)
Q Consensus 266 ~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~ 344 (466)
.+++|+....+. .....++ ++|++||++|.|+.++.|+|+|++|+|+..+ ||++|+. |+.++
T Consensus 90 idqiR~l~~~~~-~~~~~g~----~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~------------~~~lL 152 (334)
T PRK07993 90 VDAVREVTEKLY-EHARLGG----AKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACRE------------PARLL 152 (334)
T ss_pred HHHHHHHHHHHh-hccccCC----ceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECC------------hhhCh
Confidence 355665443332 2223344 6899999999999999999999999998766 8888876 89999
Q ss_pred hhHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHH
Q 012326 345 MDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLIT 404 (466)
Q Consensus 345 ~~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~ 404 (466)
+|++|||..+.|.|++.+++.+.|... ..++++....++..+ +|++..|+.+++
T Consensus 153 pTIrSRCq~~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la-~G~~~~Al~l~~ 206 (334)
T PRK07993 153 ATLRSRCRLHYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLS-AGAPGAALALLQ 206 (334)
T ss_pred HHHHhccccccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHc-CCCHHHHHHHhc
Confidence 999999999999999999999999752 347777778888888 599999988864
No 103
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.74 E-value=1.2e-16 Score=173.00 Aligned_cols=137 Identities=20% Similarity=0.216 Sum_probs=104.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeE------------------EEEeccceeEeecccccCCCCCChhHHhhh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPIL------------------VVATNRGITRIRGTNYKSAHGIPMDLLDRL 351 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~ii------------------il~tn~~~~~~~~~~~~~~~~l~~~llsR~ 351 (466)
.+++||||++.|+...+..|.+.+++....+. +-......+.+.++++.++..++++|++||
T Consensus 266 gGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~ 345 (615)
T TIGR02903 266 GGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRC 345 (615)
T ss_pred CCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhce
Confidence 57999999999999999999999986320000 000011123444445556778999999999
Q ss_pred hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--------hcCCccCHHHH
Q 012326 352 LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQK--------RKGKVVEVQDI 423 (466)
Q Consensus 352 ~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~--------~~~~~It~~~v 423 (466)
..+.|.||+.+++..++...+...++.+++++++.|+..+ .+.|.+++.|+.+...+.. .+...|+.++|
T Consensus 346 ~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv 423 (615)
T TIGR02903 346 AEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDV 423 (615)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHH
Confidence 9999999999999999999999888899999999999987 4679999999888655421 12236899999
Q ss_pred HHHHH
Q 012326 424 DRVYR 428 (466)
Q Consensus 424 ~~~~~ 428 (466)
+++..
T Consensus 424 ~~~l~ 428 (615)
T TIGR02903 424 YEVIQ 428 (615)
T ss_pred HHHhC
Confidence 88875
No 104
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.73 E-value=6.9e-17 Score=184.21 Aligned_cols=127 Identities=14% Similarity=0.199 Sum_probs=93.7
Q ss_pred CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceeccc---------------------------------
Q 012326 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE--------------------------------- 108 (466)
Q Consensus 62 ~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e--------------------------------- 108 (466)
|..+++|+||+||||||||.+|+++|.+.+ +||+.++++++++.+
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~--VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e 1703 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSY--VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLT 1703 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcC--CceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhh
Confidence 556679999999999999999999999998 999999999988643
Q ss_pred --------CCHHH---HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHH
Q 012326 109 --------MSKTE---ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIE 177 (466)
Q Consensus 109 --------~~~~~---~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~ 177 (466)
+..++ .++.+|..|... .|||||+||||++...... .++ ...+++
T Consensus 1704 ~~n~~~~~m~~~e~~~rIr~lFelARk~---SPCIIFIDEIDaL~~~ds~---------~lt------------L~qLLn 1759 (2281)
T CHL00206 1704 MMNALTMDMMPKIDRFYITLQFELAKAM---SPCIIWIPNIHDLNVNESN---------YLS------------LGLLVN 1759 (2281)
T ss_pred hcchhhhhhhhhhhHHHHHHHHHHHHHC---CCeEEEEEchhhcCCCccc---------eeh------------HHHHHH
Confidence 11121 367788887765 4999999999999765210 000 122233
Q ss_pred Hhhhcc-cCCCCeEEEEccCCCcccccccccccccccc
Q 012326 178 ALGKEK-VQSGDVIAIDKVSGKITKLGRSFSRSRDYDA 214 (466)
Q Consensus 178 ~~~~~~-~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~ 214 (466)
.+.... ......|.|.++||+|+.+|+|+.||+|||.
T Consensus 1760 eLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR 1797 (2281)
T CHL00206 1760 SLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNT 1797 (2281)
T ss_pred HhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCe
Confidence 332111 1123458889999999999999999999998
No 105
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.73 E-value=7.1e-17 Score=162.64 Aligned_cols=95 Identities=20% Similarity=0.278 Sum_probs=81.5
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.|+.+++++|++.+|+|+..+ ||++|+. +..++++++|||..++|.|++.+++.++|
T Consensus 111 ~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~------------~~~ll~TIrSRc~~i~~~~~~~~~~~~~L 178 (329)
T PRK08058 111 KKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTEN------------KHQILPTILSRCQVVEFRPLPPESLIQRL 178 (329)
T ss_pred ceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCC------------hHhCcHHHHhhceeeeCCCCCHHHHHHHH
Confidence 6799999999999999999999999988776 8888875 78999999999999999999999998888
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLIT 404 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~ 404 (466)
+. .+ ++++...+++..+ |+++.|+.+++
T Consensus 179 ~~----~g--i~~~~~~~l~~~~--g~~~~A~~l~~ 206 (329)
T PRK08058 179 QE----EG--ISESLATLLAGLT--NSVEEALALSE 206 (329)
T ss_pred HH----cC--CChHHHHHHHHHc--CCHHHHHHHhc
Confidence 64 23 6666666777765 78988887764
No 106
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.73 E-value=1.7e-16 Score=159.16 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCC
Q 012326 266 RAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIP 344 (466)
Q Consensus 266 ~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~ 344 (466)
.+++|+.+..+. .....+. ++|++||++|+|+.++.++|+|++|+|+..+ ||++|+. +..++
T Consensus 88 id~iR~l~~~~~-~~~~~~~----~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~------------~~~ll 150 (328)
T PRK05707 88 VDQVRELVSFVV-QTAQLGG----RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQ------------PSRLL 150 (328)
T ss_pred HHHHHHHHHHHh-hccccCC----CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECC------------hhhCc
Confidence 356665443332 2222333 6799999999999999999999999988765 8888876 88999
Q ss_pred hhHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHH
Q 012326 345 MDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLIT 404 (466)
Q Consensus 345 ~~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~ 404 (466)
++++|||..+.|.|++.+++.++|..... ..+++....++..+ +|++..|+.+++
T Consensus 151 ~TI~SRc~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la-~Gsp~~A~~l~~ 205 (328)
T PRK05707 151 PTIKSRCQQQACPLPSNEESLQWLQQALP----ESDERERIELLTLA-GGSPLRALQLHE 205 (328)
T ss_pred HHHHhhceeeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHc-CCCHHHHHHHHC
Confidence 99999999999999999999999986431 34566667778888 599998887764
No 107
>PRK06620 hypothetical protein; Validated
Probab=99.72 E-value=7e-16 Score=145.99 Aligned_cols=124 Identities=10% Similarity=0.131 Sum_probs=94.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCC-CCCChhHHhhhh---hhccCCCCHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSA-HGIPMDLLDRLL---IISTKPYTRDEIR 365 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~-~~l~~~llsR~~---~i~~~pl~~~el~ 365 (466)
..+++|||+|.+....+-.+...+.+... .+++++.. .++ ..+ ++|+||+. ++.++|++.+++.
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~e~g~-~ilits~~----------~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~ 153 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIINEKQK-YLLLTSSD----------KSRNFTL-PDLSSRIKSVLSILLNSPDDELIK 153 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHHhcCC-EEEEEcCC----------Cccccch-HHHHHHHhCCceEeeCCCCHHHHH
Confidence 35899999998865444444444444333 34444433 122 235 78999996 8999999999999
Q ss_pred HHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 366 KILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 366 ~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
.++++.++..++.++++++++|+... .||+|.+.++|+.....+.. .+..||.+.++++.
T Consensus 154 ~~l~k~~~~~~l~l~~ev~~~L~~~~-~~d~r~l~~~l~~l~~~~~~-~~~~it~~~~~~~l 213 (214)
T PRK06620 154 ILIFKHFSISSVTISRQIIDFLLVNL-PREYSKIIEILENINYFALI-SKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHh
Confidence 99999999889999999999999998 59999999999997655544 34679999988864
No 108
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.2e-17 Score=158.64 Aligned_cols=177 Identities=18% Similarity=0.291 Sum_probs=135.5
Q ss_pred CCCcccccCCcCCcHHHHHHHHHHHHH------H--HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccc
Q 012326 32 SLEARDVSEGMVGQLPARKAAGVILQM------I--KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSE 103 (466)
Q Consensus 32 ~~~p~~~~~~lvG~~~~k~~l~~~l~~------l--~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~ 103 (466)
.--|...+.|+-|.+...+.+++.++. + .-|..||++++|||+||||||.||+++|++.. ..|..+.+++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS--ATFlRvvGse 254 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS--ATFLRVVGSE 254 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc--hhhhhhhhHH
Confidence 345666779999999999999988865 1 12778899999999999999999999999887 7799999999
Q ss_pred eecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhh---HHHHHh
Q 012326 104 IFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGG---KMIEAL 179 (466)
Q Consensus 104 ~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~---~~~~~~ 179 (466)
+...+.++.- .++++|+.|... .|+|+|+||||++...|.-..+| ....+.. .+++++
T Consensus 255 LiQkylGdGpklvRqlF~vA~e~---apSIvFiDEIdAiGtKRyds~Sg---------------gerEiQrtmLELLNQl 316 (440)
T KOG0726|consen 255 LIQKYLGDGPKLVRELFRVAEEH---APSIVFIDEIDAIGTKRYDSNSG---------------GEREIQRTMLELLNQL 316 (440)
T ss_pred HHHHHhccchHHHHHHHHHHHhc---CCceEEeehhhhhccccccCCCc---------------cHHHHHHHHHHHHHhc
Confidence 9999999987 799999888765 49999999999998877443332 0111222 344444
Q ss_pred hhcccC-CCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhh
Q 012326 180 GKEKVQ-SGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVH 237 (466)
Q Consensus 180 ~~~~~~-~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~ 237 (466)
.+.. -|| |-|..+||+++.+|+++.||+|+|+ -+.+|-.+...++.+++
T Consensus 317 --dGFdsrgD-vKvimATnrie~LDPaLiRPGrIDr------KIef~~pDe~TkkkIf~ 366 (440)
T KOG0726|consen 317 --DGFDSRGD-VKVIMATNRIETLDPALIRPGRIDR------KIEFPLPDEKTKKKIFQ 366 (440)
T ss_pred --cCccccCC-eEEEEecccccccCHhhcCCCcccc------ccccCCCchhhhceeEE
Confidence 3444 244 5677799999999999999999999 33444445566666664
No 109
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=2.5e-16 Score=157.08 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCC
Q 012326 266 RAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIP 344 (466)
Q Consensus 266 ~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~ 344 (466)
.+++|+.... +......++ ++|++||++|.|+.++.++|+|++|+|+..+ ||++|+. +..++
T Consensus 89 id~iR~l~~~-~~~~~~~g~----~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~------------~~~ll 151 (325)
T PRK06871 89 VDQVREINEK-VSQHAQQGG----NKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADL------------SAALL 151 (325)
T ss_pred HHHHHHHHHH-HhhccccCC----ceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECC------------hHhCc
Confidence 3556543332 222223344 6799999999999999999999999999876 8888876 88999
Q ss_pred hhHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHH
Q 012326 345 MDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLIT 404 (466)
Q Consensus 345 ~~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~ 404 (466)
++++|||..+.|.|++.+++.+.|..... .++..+..++..+ .|++..|+.++.
T Consensus 152 pTI~SRC~~~~~~~~~~~~~~~~L~~~~~-----~~~~~~~~~~~l~-~g~p~~A~~~~~ 205 (325)
T PRK06871 152 PTIYSRCQTWLIHPPEEQQALDWLQAQSS-----AEISEILTALRIN-YGRPLLALTFLE 205 (325)
T ss_pred hHHHhhceEEeCCCCCHHHHHHHHHHHhc-----cChHHHHHHHHHc-CCCHHHHHHHhh
Confidence 99999999999999999999999987532 2333455667777 488888877764
No 110
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7e-17 Score=151.73 Aligned_cols=178 Identities=17% Similarity=0.212 Sum_probs=133.1
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHH--------HHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQM--------IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~--------l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
.+|....+|+-|..+.++.+.++++. .+-|..|++++|+|||||||||.+|+++|+..+ .-|+.+.++++
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--acfirvigsel 247 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACFIRVIGSEL 247 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceEEeehhHHH
Confidence 34555558999999999999988864 345888899999999999999999999999877 67999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHh-hhc
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEAL-GKE 182 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~ 182 (466)
+..++++.. -++++|.+|..- .-|+||.||+|++...|--.+-|. + ..+...+++-+ +-.
T Consensus 248 vqkyvgegarmvrelf~martk---kaciiffdeidaiggarfddg~gg-------------d--nevqrtmleli~qld 309 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTK---KACIIFFDEIDAIGGARFDDGAGG-------------D--NEVQRTMLELINQLD 309 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhccc---ceEEEEeeccccccCccccCCCCC-------------c--HHHHHHHHHHHHhcc
Confidence 999999998 799999998764 499999999999977663222110 0 11222222222 123
Q ss_pred ccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhh
Q 012326 183 KVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVV 236 (466)
Q Consensus 183 ~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~ 236 (466)
+..+.--|-|-.+||+++-+++++.||+|+|+ .... .+| ++.+|..++
T Consensus 310 gfdprgnikvlmatnrpdtldpallrpgrldr--kvef--~lp--dlegrt~i~ 357 (435)
T KOG0729|consen 310 GFDPRGNIKVLMATNRPDTLDPALLRPGRLDR--KVEF--GLP--DLEGRTHIF 357 (435)
T ss_pred CCCCCCCeEEEeecCCCCCcCHhhcCCccccc--ceec--cCC--cccccceeE
Confidence 44444447788899999999999999999999 3333 334 444455544
No 111
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=1.6e-16 Score=170.53 Aligned_cols=136 Identities=13% Similarity=0.154 Sum_probs=86.3
Q ss_pred cceeeeecccccc---HHHHHHHHH--HhhhcCCCeEEEEeccceeEeecccc-cCCCC-CChhHHh--hhhhhccCCCC
Q 012326 290 PGVLFIDEVHMLD---VECFSFLNR--ALENEMAPILVVATNRGITRIRGTNY-KSAHG-IPMDLLD--RLLIISTKPYT 360 (466)
Q Consensus 290 ~~vl~iDEi~~l~---~~~~~~L~~--~le~~~~~iiil~tn~~~~~~~~~~~-~~~~~-l~~~lls--R~~~i~~~pl~ 360 (466)
+.||+|||++.+. ...+..+++ ..+....|+|+++|....-.-...+. ...+. +.+++++ |+.+|.|+|++
T Consensus 196 ~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia 275 (637)
T TIGR00602 196 KKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIA 275 (637)
T ss_pred eeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCC
Confidence 5699999995542 234555555 33444456554444220000000000 00111 3478988 55779999999
Q ss_pred HHHHHHHHHHHHhhcCC------cc-CHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhhhcCCccCHHHHHHH
Q 012326 361 RDEIRKILDIRCQEEDV------EM-AEDAKQLLTRVGEGTSLRYAIHLITAAAL----ASQKRKGKVVEVQDIDRV 426 (466)
Q Consensus 361 ~~el~~iL~~~~~~~~~------~i-~~~~l~~l~~~a~~g~~R~ai~lL~~a~~----~a~~~~~~~It~~~v~~~ 426 (466)
..++.+.|..+++.++. .+ ++++++.|+..+ .||+|.||+.|+.++. .+...+...++..+++.+
T Consensus 276 ~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s-~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a 351 (637)
T TIGR00602 276 PTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGC-SGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKS 351 (637)
T ss_pred HHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhC-CChHHHHHHHHHHHHhcCCccccccccccccHHHhhhc
Confidence 99999999999987642 22 568999999988 6999999999999842 233445556766666654
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.71 E-value=1.4e-15 Score=145.29 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=100.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhh---cCCCeEEEEeccceeEeecccccCCCCCChhHHhhh---hhhccCCCCHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALEN---EMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRL---LIISTKPYTRDE 363 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~---~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~---~~i~~~pl~~~e 363 (466)
.++++|||+|.++...+..|...++. ...++++++++... ....+.+++++|+ ..++++||+.++
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~---------~~~~l~~~L~sr~~~~~~i~l~pl~~~~ 161 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAP---------LALPLREDLRTRLGWGLVYELKPLSDAD 161 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCH---------HhCCCCHHHHHHHhcCeEEEecCCCHHH
Confidence 45999999999988887777777754 22334555554200 0124567899997 788999999999
Q ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 364 IRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 364 l~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
...++...+...++.++++++++|++.. .||+|.+.++|+.....+ ...+..||...++++..
T Consensus 162 ~~~~l~~~~~~~~v~l~~~al~~L~~~~-~gn~~~l~~~l~~l~~~~-~~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 162 KIAALKAAAAERGLQLADEVPDYLLTHF-RRDMPSLMALLDALDRYS-LEQKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHh
Confidence 9999999888899999999999999977 699999999999976655 34557999999998764
No 113
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.71 E-value=2.5e-16 Score=165.23 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=86.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhh-----------------------cCCCeEEEEeccceeEeecccccCCCCCChh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALEN-----------------------EMAPILVVATNRGITRIRGTNYKSAHGIPMD 346 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~-----------------------~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~ 346 (466)
|..|+|||||-....+...|++.+.. -..|+||+|.|- ...-..+
T Consensus 388 P~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL------------YaPaLR~ 455 (877)
T KOG1969|consen 388 PVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL------------YAPALRP 455 (877)
T ss_pred cceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc------------cchhhhh
Confidence 77899999999988777777777651 113666666542 1111234
Q ss_pred HHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 012326 347 LLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ 411 (466)
Q Consensus 347 llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~ 411 (466)
|+.-|.++.|.|++...+.+.|+.+|..+++.++..++..|++++ ++|+|.+||.||..+...+
T Consensus 456 Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~-~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 456 LRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELT-QNDIRSCINTLQFLASNVD 519 (877)
T ss_pred cccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHh-cchHHHHHHHHHHHHHhcc
Confidence 555568899999999999999999999999999999999999999 6999999999999865543
No 114
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.71 E-value=1.2e-16 Score=167.58 Aligned_cols=184 Identities=20% Similarity=0.222 Sum_probs=132.6
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHH-------H-HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCC--------Cce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQM-------I-KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLE--------TPF 96 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~-------l-~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~--------~p~ 96 (466)
..|...|++|.|++.+++.+...+.. + ..|..+++++|||||||||||++|+++|++++.. ..|
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 44566669999999999999887653 1 2367778999999999999999999999998643 346
Q ss_pred EeeeccceecccCCHHH-HHHHHHHHHHccc-ccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhH
Q 012326 97 AMISGSEIFSLEMSKTE-ALMQAFRKAIGVR-IKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGK 174 (466)
Q Consensus 97 ~~i~~~~~~~~e~~~~~-~l~~~~~~a~~~~-~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~ 174 (466)
..+.++++.+.+.++.+ .++.+|..+.... -..|+++|+||+|++...+..+..+ +... .+...
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~------------d~e~--~il~~ 320 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSS------------DVET--TVVPQ 320 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccc------------hHHH--HHHHH
Confidence 67777888888888888 6888887765432 1259999999999998766433221 1110 11122
Q ss_pred HHHHhhhcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhh
Q 012326 175 MIEALGKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHC 238 (466)
Q Consensus 175 ~~~~~~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~ 238 (466)
++..+ .++...+-+.|..+||+++.+|+++.||+|||. ..+++.|+ ...|+.++..
T Consensus 321 LL~~L--Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~----~I~~~~Pd--~e~r~~Il~~ 376 (512)
T TIGR03689 321 LLSEL--DGVESLDNVIVIGASNREDMIDPAILRPGRLDV----KIRIERPD--AEAAADIFSK 376 (512)
T ss_pred HHHHh--cccccCCceEEEeccCChhhCCHhhcCccccce----EEEeCCCC--HHHHHHHHHH
Confidence 33333 334433457788899999999999999999998 56777774 4566666643
No 115
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.71 E-value=5e-16 Score=155.95 Aligned_cols=134 Identities=23% Similarity=0.268 Sum_probs=104.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------------CCeEEEEeccceeEeecccccCC--CCCChhHHhhh-hh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------------APILVVATNRGITRIRGTNYKSA--HGIPMDLLDRL-LI 353 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------------~~iiil~tn~~~~~~~~~~~~~~--~~l~~~llsR~-~~ 353 (466)
.++|++||++++++..++.|++++++.. .++++++|. +| ..++++|++|+ +.
T Consensus 145 ~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~------------np~eg~l~~~LldRf~l~ 212 (350)
T CHL00081 145 RGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSG------------NPEEGELRPQLLDRFGMH 212 (350)
T ss_pred CCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEecc------------CcccCCCCHHHHHHhCce
Confidence 5899999999999999999999987621 223333332 23 46999999999 56
Q ss_pred hccCCCC-HHHHHHHHHHHH-----------------------------hhcCCccCHHHHHHHHHhcC---CCCHHHHH
Q 012326 354 ISTKPYT-RDEIRKILDIRC-----------------------------QEEDVEMAEDAKQLLTRVGE---GTSLRYAI 400 (466)
Q Consensus 354 i~~~pl~-~~el~~iL~~~~-----------------------------~~~~~~i~~~~l~~l~~~a~---~g~~R~ai 400 (466)
+.+..++ .++-.+|+.... .-..+.+++++++++++++. .-++|..+
T Consensus 213 i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i 292 (350)
T CHL00081 213 AEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDI 292 (350)
T ss_pred eecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHH
Confidence 7777766 355555554421 11257899999999998862 24799999
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHH
Q 012326 401 HLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQR 435 (466)
Q Consensus 401 ~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~ 435 (466)
.+++.|.++|..+|++.|+++||+.++.+.+.++.
T Consensus 293 ~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 293 VTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999988886
No 116
>PRK08727 hypothetical protein; Validated
Probab=99.70 E-value=2.4e-15 Score=144.42 Aligned_cols=126 Identities=17% Similarity=0.117 Sum_probs=96.6
Q ss_pred cceeeeecccccc--HHHHHHHHHHhhhcC--CCeEEEEeccceeEeecccccCCC---CCChhHHhh---hhhhccCCC
Q 012326 290 PGVLFIDEVHMLD--VECFSFLNRALENEM--APILVVATNRGITRIRGTNYKSAH---GIPMDLLDR---LLIISTKPY 359 (466)
Q Consensus 290 ~~vl~iDEi~~l~--~~~~~~L~~~le~~~--~~iiil~tn~~~~~~~~~~~~~~~---~l~~~llsR---~~~i~~~pl 359 (466)
..+|+|||+|.+. .+....+.+++.... ..-+|+++|. .|. .+.++++|| |..+.|+||
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~-----------~p~~l~~~~~dL~SRl~~~~~~~l~~~ 162 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQ-----------MPDGLALVLPDLRSRLAQCIRIGLPVL 162 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCC-----------ChhhhhhhhHHHHHHHhcCceEEecCC
Confidence 4599999999885 333344444443321 1236666664 243 446899999 688999999
Q ss_pred CHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 360 TRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 360 ~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
+.+++.++++.+|...++.++++++++|++.+ .||+|.++++|+.+...+... +..||.+.++++..
T Consensus 163 ~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~-~rd~r~~l~~L~~l~~~~~~~-~~~it~~~~~~~l~ 229 (233)
T PRK08727 163 DDVARAAVLRERAQRRGLALDEAAIDWLLTHG-ERELAGLVALLDRLDRESLAA-KRRVTVPFLRRVLE 229 (233)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHh
Confidence 99999999999999999999999999999998 599999999999876545433 45799998888763
No 117
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.70 E-value=1.7e-15 Score=153.45 Aligned_cols=139 Identities=14% Similarity=0.216 Sum_probs=92.8
Q ss_pred cceeeeeccccccH------------HHHHHHHHHhhhcCCCe--EEEEeccceeEeecc-cccCCCCCChhHHhhh-hh
Q 012326 290 PGVLFIDEVHMLDV------------ECFSFLNRALENEMAPI--LVVATNRGITRIRGT-NYKSAHGIPMDLLDRL-LI 353 (466)
Q Consensus 290 ~~vl~iDEi~~l~~------------~~~~~L~~~le~~~~~i--iil~tn~~~~~~~~~-~~~~~~~l~~~llsR~-~~ 353 (466)
.||+||||+|++.. .+|..|++.+|.....+ .-+-|.+-.+...|+ +...|+++.|+|..|+ .+
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~ 327 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIR 327 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence 68999999999843 35888999998754321 111111111111222 2334788999999999 66
Q ss_pred hccCCCCHHHHHHHHHHH-----------HhhcC--CccCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhhh
Q 012326 354 ISTKPYTRDEIRKILDIR-----------CQEED--VEMAEDAKQLLTRVGE-------GTSLRYAIHLITAAALASQKR 413 (466)
Q Consensus 354 i~~~pl~~~el~~iL~~~-----------~~~~~--~~i~~~~l~~l~~~a~-------~g~~R~ai~lL~~a~~~a~~~ 413 (466)
+.+.+|+.+++.+||... ++.++ +.|++++++.|++.|. +.++|.+..+++....-+.-+
T Consensus 328 v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe 407 (441)
T TIGR00390 328 VELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFE 407 (441)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhc
Confidence 779999999999999332 23334 4789999999999973 467888888888765333211
Q ss_pred ------cCCccCHHHHHHHHH
Q 012326 414 ------KGKVVEVQDIDRVYR 428 (466)
Q Consensus 414 ------~~~~It~~~v~~~~~ 428 (466)
+.-.||.+.|+....
T Consensus 408 ~p~~~~~~v~I~~~~V~~~l~ 428 (441)
T TIGR00390 408 APDLSGQNITIDADYVSKKLG 428 (441)
T ss_pred CCCCCCCEEEECHHHHHhHHH
Confidence 123467777765554
No 118
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.3e-16 Score=161.76 Aligned_cols=203 Identities=18% Similarity=0.256 Sum_probs=156.1
Q ss_pred ccCCcCCcHHHHHHHHHHHHH-------HHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCC
Q 012326 38 VSEGMVGQLPARKAAGVILQM-------IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMS 110 (466)
Q Consensus 38 ~~~~lvG~~~~k~~l~~~l~~-------l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~ 110 (466)
.|+|+.|.+.+++.+...+-. +.+=+.+.+++||.||||+|||.+++++|.+.+ ..|+.++++.+.+.|.+
T Consensus 151 ~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~--atff~iSassLtsK~~G 228 (428)
T KOG0740|consen 151 GWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESG--ATFFNISASSLTSKYVG 228 (428)
T ss_pred cccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhc--ceEeeccHHHhhhhccC
Confidence 349999999999998877643 233344579999999999999999999999998 78999999999999999
Q ss_pred HHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCCCe
Q 012326 111 KTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSGDV 189 (466)
Q Consensus 111 ~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 189 (466)
+.+ .++.+|..|... +|+++|+||+|++...|.-+... ....+-..++-+..-....+.|.
T Consensus 229 e~eK~vralf~vAr~~---qPsvifidEidslls~Rs~~e~e---------------~srr~ktefLiq~~~~~s~~~dr 290 (428)
T KOG0740|consen 229 ESEKLVRALFKVARSL---QPSVIFIDEIDSLLSKRSDNEHE---------------SSRRLKTEFLLQFDGKNSAPDDR 290 (428)
T ss_pred hHHHHHHHHHHHHHhc---CCeEEEechhHHHHhhcCCcccc---------------cchhhhhHHHhhhccccCCCCCe
Confidence 998 788888777654 59999999999998888433321 11123334455555566778889
Q ss_pred EEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhh--------hhcchhhHHHHhhhcccccccccCC
Q 012326 190 IAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVV--------HCVTLHEIDVINSRTQGFLALFTGD 261 (466)
Q Consensus 190 i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~--------~~~~l~~ld~~~~~~~~~~~l~~~~ 261 (466)
|.|..+||+++.+|.+..| ||- ...|+|+|+. ..|..++ +.++..+++.+..-++||++
T Consensus 291 vlvigaTN~P~e~Dea~~R--rf~----kr~yiplPd~--etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysg----- 357 (428)
T KOG0740|consen 291 VLVIGATNRPWELDEAARR--RFV----KRLYIPLPDY--ETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSG----- 357 (428)
T ss_pred EEEEecCCCchHHHHHHHH--Hhh----ceeeecCCCH--HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCccc-----
Confidence 9999999999999999977 343 3678999965 4454444 34556678888888999876
Q ss_pred ccchhHHHHHHHH
Q 012326 262 TGEIRAEVREQID 274 (466)
Q Consensus 262 ~~ei~~~~r~~i~ 274 (466)
.+|..-++++..
T Consensus 358 -sdi~~l~kea~~ 369 (428)
T KOG0740|consen 358 -SDITALCKEAAM 369 (428)
T ss_pred -ccHHHHHHHhhc
Confidence 667776666543
No 119
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.69 E-value=4.8e-16 Score=144.28 Aligned_cols=91 Identities=18% Similarity=0.262 Sum_probs=80.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.++.+.++.|++.+++++... ||++++. +..+++++++||..+.|.|++.+++.++|
T Consensus 97 ~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~------------~~~l~~~i~sr~~~~~~~~~~~~~~~~~l 164 (188)
T TIGR00678 97 RRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPS------------PEKLLPTIRSRCQVLPFPPLSEEALLQWL 164 (188)
T ss_pred eEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECC------------hHhChHHHHhhcEEeeCCCCCHHHHHHHH
Confidence 6799999999999999999999999976544 7777765 67899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYA 399 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~a 399 (466)
... + ++++++++++..+ +|++|.|
T Consensus 165 ~~~----g--i~~~~~~~i~~~~-~g~~r~~ 188 (188)
T TIGR00678 165 IRQ----G--ISEEAAELLLALA-GGSPGAA 188 (188)
T ss_pred HHc----C--CCHHHHHHHHHHc-CCCcccC
Confidence 885 3 8899999999999 5999864
No 120
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.68 E-value=5.2e-16 Score=171.87 Aligned_cols=133 Identities=24% Similarity=0.273 Sum_probs=93.5
Q ss_pred cceeeeeccccccH---------HHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCC
Q 012326 290 PGVLFIDEVHMLDV---------ECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPY 359 (466)
Q Consensus 290 ~~vl~iDEi~~l~~---------~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl 359 (466)
+.||||||+|.+.. +..+.|...++.. .+ +|.+||.. .+.......++|.+||..+.+.+|
T Consensus 275 ~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~~-------e~~~~~~~d~al~rRf~~i~v~~p 345 (731)
T TIGR02639 275 NAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTYE-------EYKNHFEKDRALSRRFQKIDVGEP 345 (731)
T ss_pred CeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCHH-------HHHHHhhhhHHHHHhCceEEeCCC
Confidence 56999999998842 2344454444432 22 33444320 011124568899999999999999
Q ss_pred CHHHHHHHHHHHHhhc----CCccCHHHHHHHHHhcCC--CC---HHHHHHHHHHHHHHHhhh----cCCccCHHHHHHH
Q 012326 360 TRDEIRKILDIRCQEE----DVEMAEDAKQLLTRVGEG--TS---LRYAIHLITAAALASQKR----KGKVVEVQDIDRV 426 (466)
Q Consensus 360 ~~~el~~iL~~~~~~~----~~~i~~~~l~~l~~~a~~--g~---~R~ai~lL~~a~~~a~~~----~~~~It~~~v~~~ 426 (466)
+.++...||+...... ++.++++++.+++.++.. ++ +++|+.+++.++...... ....|+.++|..+
T Consensus 346 ~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~ 425 (731)
T TIGR02639 346 SIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENV 425 (731)
T ss_pred CHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHH
Confidence 9999999999776542 578999999999998832 23 789999999887654332 2356999999999
Q ss_pred HHHHH
Q 012326 427 YRLFL 431 (466)
Q Consensus 427 ~~~~~ 431 (466)
+..+.
T Consensus 426 i~~~t 430 (731)
T TIGR02639 426 VAKMA 430 (731)
T ss_pred HHHHh
Confidence 88664
No 121
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.68 E-value=1.7e-15 Score=151.82 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=102.2
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------------CCeEEEEeccceeEeecccccCC--CCCChhHHhhh-hh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------------APILVVATNRGITRIRGTNYKSA--HGIPMDLLDRL-LI 353 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------------~~iiil~tn~~~~~~~~~~~~~~--~~l~~~llsR~-~~ 353 (466)
.++|++||+++++++.++.|+..+++.. .++++++|.+ | ..+++++++|| ..
T Consensus 129 ~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~N------------P~e~~l~~aLldRF~~~ 196 (334)
T PRK13407 129 RGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGN------------PEEGELRPQLLDRFGLS 196 (334)
T ss_pred CCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCC------------cccCCCCHHHHhhcceE
Confidence 4799999999999999999999997643 2333333322 3 46899999999 56
Q ss_pred hccCCCCH-HHHHHHHHHHHh-----------------------------hcCCccCHHHHHHHHHhcC---CCCHHHHH
Q 012326 354 ISTKPYTR-DEIRKILDIRCQ-----------------------------EEDVEMAEDAKQLLTRVGE---GTSLRYAI 400 (466)
Q Consensus 354 i~~~pl~~-~el~~iL~~~~~-----------------------------~~~~~i~~~~l~~l~~~a~---~g~~R~ai 400 (466)
+.+.++.. ++-.+++..... -..+.+++++++++++++. ..++|..+
T Consensus 197 v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i 276 (334)
T PRK13407 197 VEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGEL 276 (334)
T ss_pred EEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHH
Confidence 66666555 554555544211 1257899999999998862 25899999
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHH
Q 012326 401 HLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQR 435 (466)
Q Consensus 401 ~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~ 435 (466)
.++..|.+.|..+|++.|+++||+.+....+.++.
T Consensus 277 ~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~hR~ 311 (334)
T PRK13407 277 TLLRAARALAAFEGAEAVGRSHLRSVATMALSHRL 311 (334)
T ss_pred HHHHHHHHHHHHcCCCeeCHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999987776664
No 122
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.68 E-value=8.4e-16 Score=154.15 Aligned_cols=96 Identities=26% Similarity=0.222 Sum_probs=80.3
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.|+.+++++|++++|++...+ ||++||+ |..+.++++|||..+.|.|++.... |.
T Consensus 110 ~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~------------~~~il~tI~SRc~~i~f~~~~~~~~--i~ 175 (325)
T COG0470 110 YKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITND------------PSKILPTIRSRCQRIRFKPPSRLEA--IA 175 (325)
T ss_pred ceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCC------------hhhccchhhhcceeeecCCchHHHH--HH
Confidence 6799999999999999999999999988776 8899987 8899999999999999999443222 22
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALA 409 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~ 409 (466)
. .+ ++++..++..+ .||+|.+++.++.....
T Consensus 176 ~----~e-----~~~l~~i~~~~-~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 176 W----LE-----DQGLEEIAAVA-EGDARKAINPLQALAAL 206 (325)
T ss_pred H----hh-----ccchhHHHHHH-HHHHHcCCCHHHHHHHh
Confidence 2 22 67888888888 59999999999987654
No 123
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.67 E-value=9.1e-15 Score=139.30 Aligned_cols=125 Identities=18% Similarity=0.263 Sum_probs=95.1
Q ss_pred cceeeeeccccccHH--HHHHHHHHhhhc--CCCeEEEEeccceeEeecccccCCCC--CC-hhHHhhh---hhhccCCC
Q 012326 290 PGVLFIDEVHMLDVE--CFSFLNRALENE--MAPILVVATNRGITRIRGTNYKSAHG--IP-MDLLDRL---LIISTKPY 359 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~--~~~~L~~~le~~--~~~iiil~tn~~~~~~~~~~~~~~~~--l~-~~llsR~---~~i~~~pl 359 (466)
.++++|||+|.++.. .+..|...+... ....+|++++. .+.. +. +.+.+|+ ..+.++|+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~-----------~~~~~~~~~~~L~~r~~~~~~i~l~~l 159 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA-----------APAQLPLRLPDLRTRLAWGLVFQLPPL 159 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC-----------ChHHCCcccHHHHHHHhcCeeEecCCC
Confidence 359999999999763 366666655431 11235555543 1222 33 7888897 47889999
Q ss_pred CHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 360 TRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 360 ~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
+.++...++...+...++.++++++++|++.. .||+|.+.++++.+..++.. ++..||.+.+++++
T Consensus 160 ~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~~~~~~-~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 160 SDEEKIAALQSRAARRGLQLPDEVADYLLRHG-SRDMGSLMALLDALDRASLA-AKRKITIPFVKEVL 225 (226)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHh
Confidence 99999999999888889999999999999976 69999999999998776644 45679999988764
No 124
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.67 E-value=8.6e-15 Score=148.54 Aligned_cols=141 Identities=15% Similarity=0.190 Sum_probs=93.2
Q ss_pred cceeeeeccccccH------------HHHHHHHHHhhhcCCCe--EEEEeccceeEeecc-cccCCCCCChhHHhhh-hh
Q 012326 290 PGVLFIDEVHMLDV------------ECFSFLNRALENEMAPI--LVVATNRGITRIRGT-NYKSAHGIPMDLLDRL-LI 353 (466)
Q Consensus 290 ~~vl~iDEi~~l~~------------~~~~~L~~~le~~~~~i--iil~tn~~~~~~~~~-~~~~~~~l~~~llsR~-~~ 353 (466)
.||+||||+|++.. ..|..|++.+|.....+ .-+-|..-.+...|+ +..-|+++.|+|..|+ .+
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~ 329 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIR 329 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence 68999999999842 36888999998754321 111111111111222 2234688999999999 66
Q ss_pred hccCCCCHHHHHHHHHH-----------HHhhcC--CccCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhhh
Q 012326 354 ISTKPYTRDEIRKILDI-----------RCQEED--VEMAEDAKQLLTRVGE-------GTSLRYAIHLITAAALASQKR 413 (466)
Q Consensus 354 i~~~pl~~~el~~iL~~-----------~~~~~~--~~i~~~~l~~l~~~a~-------~g~~R~ai~lL~~a~~~a~~~ 413 (466)
+.+.||+.+++.+||.. .++.++ +.|++++++.|++.|. +.++|.+..+++....-..-+
T Consensus 330 v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe 409 (443)
T PRK05201 330 VELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFE 409 (443)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhcc
Confidence 77999999999999943 123335 4889999999999973 467888888888775333211
Q ss_pred ----c--CCccCHHHHHHHHHHH
Q 012326 414 ----K--GKVVEVQDIDRVYRLF 430 (466)
Q Consensus 414 ----~--~~~It~~~v~~~~~~~ 430 (466)
. .-.||.+.|+....-.
T Consensus 410 ~p~~~~~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 410 APDMSGETVTIDAAYVDEKLGDL 432 (443)
T ss_pred CCCCCCCEEEECHHHHHHHHHHH
Confidence 1 1346777776655433
No 125
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.66 E-value=2.4e-15 Score=149.80 Aligned_cols=96 Identities=16% Similarity=0.128 Sum_probs=82.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++||++|.|+..+.|+|+|++|+|+..+ ||++|+. +..++++++|||..+.|.+++.++..++|
T Consensus 114 ~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~------------~~~lLpTIrSRCq~i~~~~~~~~~~~~~L 181 (319)
T PRK08769 114 AQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQ------------PARLPATIRSRCQRLEFKLPPAHEALAWL 181 (319)
T ss_pred cEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECC------------hhhCchHHHhhheEeeCCCcCHHHHHHHH
Confidence 6799999999999999999999999998765 8888886 88999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLIT 404 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~ 404 (466)
... .+++.....++.++ +|++..|+.+++
T Consensus 182 ~~~------~~~~~~a~~~~~l~-~G~p~~A~~~~~ 210 (319)
T PRK08769 182 LAQ------GVSERAAQEALDAA-RGHPGLAAQWLR 210 (319)
T ss_pred HHc------CCChHHHHHHHHHc-CCCHHHHHHHhc
Confidence 752 25555566677888 598888887763
No 126
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.66 E-value=3.8e-15 Score=162.33 Aligned_cols=233 Identities=22% Similarity=0.309 Sum_probs=166.8
Q ss_pred ccccCCcCCcHHHHHHHHHHHHHHHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceeccc
Q 012326 36 RDVSEGMVGQLPARKAAGVILQMIKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE 108 (466)
Q Consensus 36 ~~~~~~lvG~~~~k~~l~~~l~~l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e 108 (466)
...++++.|.+.+++.+..+++.+.. +...+++++|+||||||||++|++++.+++ .||+.++++.+.+..
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--~~f~~is~~~~~~~~ 225 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGSDFVEMF 225 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCEEEEehHHhHHhh
Confidence 44558999999999999988876543 222358899999999999999999999998 799999999998887
Q ss_pred CCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCC
Q 012326 109 MSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSG 187 (466)
Q Consensus 109 ~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
.+... .++.+|..+... .||+||+||+|++...+.....|
T Consensus 226 ~g~~~~~~~~~f~~a~~~---~P~IifIDEiD~l~~~r~~~~~g------------------------------------ 266 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKA---APCIIFIDEIDAVGRQRGAGLGG------------------------------------ 266 (644)
T ss_pred hcccHHHHHHHHHHHHhc---CCcEEEehhHhhhhhccCCCCCC------------------------------------
Confidence 77766 788888877543 59999999999987665432211
Q ss_pred CeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchhH
Q 012326 188 DVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRA 267 (466)
Q Consensus 188 d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~~ 267 (466)
+ ..
T Consensus 267 ------------------------------------------------------------------------~-----~~ 269 (644)
T PRK10733 267 ------------------------------------------------------------------------G-----HD 269 (644)
T ss_pred ------------------------------------------------------------------------C-----ch
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhH
Q 012326 268 EVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDL 347 (466)
Q Consensus 268 ~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~l 347 (466)
..+..+++.+.. +|.. .....-++|.+||+ |..+++++
T Consensus 270 ~~~~~ln~lL~~---------------mdg~---------------~~~~~vivIaaTN~------------p~~lD~Al 307 (644)
T PRK10733 270 EREQTLNQMLVE---------------MDGF---------------EGNEGIIVIAATNR------------PDVLDPAL 307 (644)
T ss_pred HHHHHHHHHHHh---------------hhcc---------------cCCCCeeEEEecCC------------hhhcCHHH
Confidence 000111111100 0100 00111247778887 88999999
Q ss_pred Hh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHH
Q 012326 348 LD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDID 424 (466)
Q Consensus 348 ls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~ 424 (466)
++ || ..+.+..|+.++..+||+..+....+.-+- -+..+++.+.+-+.....+++..|...|...++..|+.+++.
T Consensus 308 ~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~-d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~ 386 (644)
T PRK10733 308 LRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI-DAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFE 386 (644)
T ss_pred hCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcC-CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 86 77 678899999999999999988765432221 145577766445778888899999888888888999999999
Q ss_pred HHHHH
Q 012326 425 RVYRL 429 (466)
Q Consensus 425 ~~~~~ 429 (466)
.+...
T Consensus 387 ~a~~~ 391 (644)
T PRK10733 387 KAKDK 391 (644)
T ss_pred HHHHH
Confidence 88753
No 127
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.9e-16 Score=160.80 Aligned_cols=192 Identities=19% Similarity=0.291 Sum_probs=139.3
Q ss_pred CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHH-HHHHHHHHHHccccc-----CceEEEE
Q 012326 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTE-ALMQAFRKAIGVRIK-----EEAEVIE 135 (466)
Q Consensus 62 ~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~-~l~~~~~~a~~~~~~-----~~~ii~~ 135 (466)
|...-+++|||||||||||.+|+.+.+.++..-|-+ +++.++.+++++++| .++.+|..|..-.+. +=+||+.
T Consensus 252 Gi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKI-VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIF 330 (744)
T KOG0741|consen 252 GIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKI-VNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIF 330 (744)
T ss_pred CccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcc-cCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEe
Confidence 344459999999999999999999999999876654 899999999999999 999999877654222 5678999
Q ss_pred cceeeeeccCCCCCCC-CceeeEEEeeeccchhHhhhhhHHHHHhhh--cccCCCCeEEEEccCCCcccccccccccccc
Q 012326 136 GEVVEVQIDRPATSGA-AAKTGKLTLKTTEMETVYDLGGKMIEALGK--EKVQSGDVIAIDKVSGKITKLGRSFSRSRDY 212 (466)
Q Consensus 136 dEid~~~~~~~~~~~g-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~ 212 (466)
||+|++|-.|...++| .+ +....+++.. +||..=.=|.|..-||+.+.+|.|+.||+|+
T Consensus 331 DEiDAICKqRGS~~g~TGV------------------hD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRl 392 (744)
T KOG0741|consen 331 DEIDAICKQRGSMAGSTGV------------------HDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRL 392 (744)
T ss_pred hhhHHHHHhcCCCCCCCCc------------------cHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCce
Confidence 9999999888654433 11 2222333311 2233223378888999999999999999999
Q ss_pred cccCCceeeecCCChhHHhHHHhhhhcch--------h---hHHHHhhhcccccccccCCccchhHHHHHHHHHHHHHHH
Q 012326 213 DAMGPHTKFVQCPDGELQKRKEVVHCVTL--------H---EIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWR 281 (466)
Q Consensus 213 d~~~~~~~~i~~p~~~~~~r~~~~~~~~l--------~---~ld~~~~~~~~~~~l~~~~~~ei~~~~r~~i~~~~~~~~ 281 (466)
.+ +--+.+|+. .+|.++++-+|- . ++..++..|.+|++ .|+..-++.+..-++++..
T Consensus 393 EV----qmEIsLPDE--~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSG------AEleglVksA~S~A~nR~v 460 (744)
T KOG0741|consen 393 EV----QMEISLPDE--KGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSG------AELEGLVKSAQSFAMNRHV 460 (744)
T ss_pred EE----EEEEeCCCc--cCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCch------hHHHHHHHHHHHHHHHhhh
Confidence 98 666777743 345444422111 1 45566777777766 7788888888887877777
Q ss_pred hhc
Q 012326 282 EEG 284 (466)
Q Consensus 282 ~~~ 284 (466)
+.+
T Consensus 461 k~~ 463 (744)
T KOG0741|consen 461 KAG 463 (744)
T ss_pred ccC
Confidence 655
No 128
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.64 E-value=5.4e-15 Score=155.41 Aligned_cols=127 Identities=15% Similarity=0.265 Sum_probs=97.7
Q ss_pred cceeeeeccccccH--HHHHHHHHHhh---hcCCCeEEEEeccceeEeecccccCCC---CCChhHHhhh---hhhccCC
Q 012326 290 PGVLFIDEVHMLDV--ECFSFLNRALE---NEMAPILVVATNRGITRIRGTNYKSAH---GIPMDLLDRL---LIISTKP 358 (466)
Q Consensus 290 ~~vl~iDEi~~l~~--~~~~~L~~~le---~~~~~iiil~tn~~~~~~~~~~~~~~~---~l~~~llsR~---~~i~~~p 358 (466)
..+|+|||+|.+.. ..+..+..++. +...+ ++++++. +|. .+.+.+.||+ ..+.+.|
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~-iiits~~-----------~p~~l~~l~~~l~SRl~~gl~v~i~~ 279 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQ-IVLTSDR-----------PPKELPGLEERLRSRFEWGLTVDIEP 279 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCc-EEEECCC-----------CHHHHHHHHHHHHhHhcCCeeEEecC
Confidence 46999999998843 22333333322 22233 4556654 232 3567899999 5799999
Q ss_pred CCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 359 YTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 359 l~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
|+.++...||+.++...++.++++++++|++.+ .||+|.+..+|......+... +..||.+.+++++...
T Consensus 280 pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~-~~~~R~l~~~l~~l~~~~~~~-~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 280 PDLETRIAILKKKAEEEGIDLPDEVLEFIAKNI-TSNVRELEGALNRLIAYASLT-GKPITLELAKEALKDL 349 (450)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc-CCCHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999998 599999999999888777544 4569999999988765
No 129
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.64 E-value=8.4e-15 Score=145.83 Aligned_cols=94 Identities=10% Similarity=0.124 Sum_probs=79.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++||++|.|+..+.|+|+|++|+|+..+ ||++|+. +..+++|++|||..+.|.|++.+++.++|
T Consensus 109 ~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~------------~~~lLpTI~SRCq~~~~~~~~~~~~~~~L 176 (319)
T PRK06090 109 YRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHN------------QKRLLPTIVSRCQQWVVTPPSTAQAMQWL 176 (319)
T ss_pred ceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECC------------hhhChHHHHhcceeEeCCCCCHHHHHHHH
Confidence 6799999999999999999999999998866 8888876 89999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLIT 404 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~ 404 (466)
... ++. ....++.++ +|++..|+.+++
T Consensus 177 ~~~----~~~----~~~~~l~l~-~G~p~~A~~~~~ 203 (319)
T PRK06090 177 KGQ----GIT----VPAYALKLN-MGSPLKTLAMMK 203 (319)
T ss_pred HHc----CCc----hHHHHHHHc-CCCHHHHHHHhC
Confidence 752 332 124566777 588888887774
No 130
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.64 E-value=2.6e-15 Score=136.10 Aligned_cols=59 Identities=25% Similarity=0.313 Sum_probs=48.9
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYT 360 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~ 360 (466)
++|++||++|.|+.+++++|+|++|+++..+ ||++|+. +..++++++|||+.+.|.|++
T Consensus 103 ~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~------------~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 103 YKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN------------PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp SEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-------------GGGS-HHHHTTSEEEEE----
T ss_pred ceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC------------hHHChHHHHhhceEEecCCCC
Confidence 6799999999999999999999999998776 8888876 889999999999999999874
No 131
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.64 E-value=1.2e-14 Score=145.99 Aligned_cols=137 Identities=23% Similarity=0.260 Sum_probs=104.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------------CCeEEEEeccceeEeecccccCCCCCChhHHhhh-hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------------APILVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------------~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~ 355 (466)
.+++|+||++++++..++.|++++++.. .++++++|.+ .....++++|++|+ ..+.
T Consensus 132 ~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~n----------p~eg~l~~~LldRf~l~i~ 201 (337)
T TIGR02030 132 RGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGN----------PEEGELRPQLLDRFGLHAE 201 (337)
T ss_pred CCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccc----------cccCCCCHHHHhhcceEEE
Confidence 4799999999999999999999997642 2233333322 01247999999999 5566
Q ss_pred cCCCCH-HHHHHHHHHHHh-----------------------------hcCCccCHHHHHHHHHhcC---CCCHHHHHHH
Q 012326 356 TKPYTR-DEIRKILDIRCQ-----------------------------EEDVEMAEDAKQLLTRVGE---GTSLRYAIHL 402 (466)
Q Consensus 356 ~~pl~~-~el~~iL~~~~~-----------------------------~~~~~i~~~~l~~l~~~a~---~g~~R~ai~l 402 (466)
+.++.. ++..+++..... -..+.+++++++++++++. ..+.|..+.+
T Consensus 202 l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l 281 (337)
T TIGR02030 202 IRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTL 281 (337)
T ss_pred CCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHH
Confidence 666655 555566655211 1257899999999988752 1368999999
Q ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHHH
Q 012326 403 ITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRS 436 (466)
Q Consensus 403 L~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~~ 436 (466)
++.|.++|..+|+..|+++||+.++.+.+.++..
T Consensus 282 ~raArA~Aal~GR~~V~~dDv~~~a~~vL~HR~~ 315 (337)
T TIGR02030 282 NRAAKALAAFEGRTEVTVDDIRRVAVLALRHRLR 315 (337)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999888853
No 132
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.64 E-value=7.5e-15 Score=147.50 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=78.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++||++|+|+.++.|+|+|++|+|+..+ ||++|++ |..++++++|||..+.|.|++.+++.++|
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~------------~~~LLpTI~SRcq~i~~~~~~~~~~~~~L 200 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSAR------------IDRLLPTILSRCRQFPMTVPAPEAAAAWL 200 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECC------------hhhCcHHHHhcCEEEEecCCCHHHHHHHH
Confidence 6799999999999999999999999998876 8888876 89999999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLI 403 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL 403 (466)
... + +++. +.++..+ +|++..|+.++
T Consensus 201 ~~~----~--~~~~--~~~l~~~-~Gsp~~Al~~~ 226 (342)
T PRK06964 201 AAQ----G--VADA--DALLAEA-GGAPLAALALA 226 (342)
T ss_pred HHc----C--CChH--HHHHHHc-CCCHHHHHHHH
Confidence 863 2 3332 2345666 58888888775
No 133
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.9e-15 Score=166.07 Aligned_cols=194 Identities=15% Similarity=0.224 Sum_probs=149.9
Q ss_pred cccCCcCCcHHHHHHHHHHHHHH--------HcCCCCCceEEEecCCCCChHHHHHHHHHHcCC---CCceEeeecccee
Q 012326 37 DVSEGMVGQLPARKAAGVILQMI--------KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGL---ETPFAMISGSEIF 105 (466)
Q Consensus 37 ~~~~~lvG~~~~k~~l~~~l~~l--------~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~---~~p~~~i~~~~~~ 105 (466)
.-|++|-|.++.+..+++++... .-+..|++++|++||||||||+.|+++|..+.. .+-|+.-++.++.
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l 341 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL 341 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh
Confidence 34599999999999999887542 225667899999999999999999999987765 4779999999999
Q ss_pred cccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhccc
Q 012326 106 SLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKV 184 (466)
Q Consensus 106 ~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (466)
+.|+++.+ .++.+|..|... +|+|||.||||.+++-|+..-. .....+-..++--+ .|+
T Consensus 342 skwvgEaERqlrllFeeA~k~---qPSIIffdeIdGlapvrSskqE---------------qih~SIvSTLLaLm--dGl 401 (1080)
T KOG0732|consen 342 SKWVGEAERQLRLLFEEAQKT---QPSIIFFDEIDGLAPVRSSKQE---------------QIHASIVSTLLALM--DGL 401 (1080)
T ss_pred ccccCcHHHHHHHHHHHHhcc---CceEEeccccccccccccchHH---------------HhhhhHHHHHHHhc--cCC
Confidence 99999999 899999998875 4999999999999998842110 00111111222222 233
Q ss_pred CCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhh--------hcchhhHHHHhhhcccccc
Q 012326 185 QSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVH--------CVTLHEIDVINSRTQGFLA 256 (466)
Q Consensus 185 ~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~--------~~~l~~ld~~~~~~~~~~~ 256 (466)
..---|.|..+||+++.+++++.||++||. .+|.|+| ++.+|..++. .+...-++.++..+.||.+
T Consensus 402 dsRgqVvvigATnRpda~dpaLRRPgrfdr----ef~f~lp--~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~g 475 (1080)
T KOG0732|consen 402 DSRGQVVVIGATNRPDAIDPALRRPGRFDR----EFYFPLP--DVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGG 475 (1080)
T ss_pred CCCCceEEEcccCCccccchhhcCCcccce----eEeeeCC--chHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccch
Confidence 322337788899999999999999999999 8899999 6667777763 3555577888898888876
No 134
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.63 E-value=9.2e-15 Score=162.82 Aligned_cols=106 Identities=22% Similarity=0.328 Sum_probs=78.1
Q ss_pred cceeeeeccccccHH----HHHHHHHHhhhc---------------CCCe-EEEEeccceeEeecccccCCCCCChhHHh
Q 012326 290 PGVLFIDEVHMLDVE----CFSFLNRALENE---------------MAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLD 349 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~----~~~~L~~~le~~---------------~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~lls 349 (466)
..|++|||+|.+... ..++|+..++.. ...+ ||++||. +..++++|++
T Consensus 415 ~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~------------~~~i~~~L~~ 482 (775)
T TIGR00763 415 NPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANS------------IDTIPRPLLD 482 (775)
T ss_pred CCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCC------------chhCCHHHhC
Confidence 459999999999653 346777777531 1233 6666665 6789999999
Q ss_pred hhhhhccCCCCHHHHHHHHHHHHh----------hcCCccCHHHHHHHHHhc-CCCCHHHHHHHHHHHH
Q 012326 350 RLLIISTKPYTRDEIRKILDIRCQ----------EEDVEMAEDAKQLLTRVG-EGTSLRYAIHLITAAA 407 (466)
Q Consensus 350 R~~~i~~~pl~~~el~~iL~~~~~----------~~~~~i~~~~l~~l~~~a-~~g~~R~ai~lL~~a~ 407 (466)
||.++.|.+|+.++...|++..+. .+++.++++++.+|++.. .+.++|.+-..++..+
T Consensus 483 R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~ 551 (775)
T TIGR00763 483 RMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKIC 551 (775)
T ss_pred CeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHH
Confidence 999999999999999999976541 124689999999998753 2356777666666554
No 135
>PRK05642 DNA replication initiation factor; Validated
Probab=99.63 E-value=7.6e-14 Score=134.08 Aligned_cols=125 Identities=14% Similarity=0.224 Sum_probs=94.6
Q ss_pred ceeeeeccccccH--HHHHHHHHHhhhcCC--CeEEEEeccceeEeecccccCC---CCCChhHHhhh---hhhccCCCC
Q 012326 291 GVLFIDEVHMLDV--ECFSFLNRALENEMA--PILVVATNRGITRIRGTNYKSA---HGIPMDLLDRL---LIISTKPYT 360 (466)
Q Consensus 291 ~vl~iDEi~~l~~--~~~~~L~~~le~~~~--~iiil~tn~~~~~~~~~~~~~~---~~l~~~llsR~---~~i~~~pl~ 360 (466)
.+++||+++.+.. .....|.+++..... ..++++++. .| ....++|+||+ .++++.|++
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~-----------~p~~l~~~~~~L~SRl~~gl~~~l~~~~ 167 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASK-----------SPRELPIKLPDLKSRLTLALVFQMRGLS 167 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCC-----------CHHHcCccCccHHHHHhcCeeeecCCCC
Confidence 4899999998742 333445555433211 235555553 12 23468899999 889999999
Q ss_pred HHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 361 RDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 361 ~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
.++...+++.++...++.++++++++|++.. .+|+|.+.++|+.....+ ...+..||...+++++.
T Consensus 168 ~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~-~~d~r~l~~~l~~l~~~~-l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 168 DEDKLRALQLRASRRGLHLTDEVGHFILTRG-TRSMSALFDLLERLDQAS-LQAQRKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH-HHcCCcCCHHHHHHHhc
Confidence 9999999998888889999999999999998 599999999999886533 44557799999988763
No 136
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.62 E-value=5.4e-15 Score=162.48 Aligned_cols=117 Identities=23% Similarity=0.326 Sum_probs=84.9
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC------------CCeEEEEeccceeEe-----eccccc-C-------CCCCC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM------------APILVVATNRGITRI-----RGTNYK-S-------AHGIP 344 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~------------~~iiil~tn~~~~~~-----~~~~~~-~-------~~~l~ 344 (466)
++|+++||++++++++++.|++.+++.. ..+||++||.|...+ .+.... . -..++
T Consensus 558 ~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~ 637 (758)
T PRK11034 558 HAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT 637 (758)
T ss_pred CcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcC
Confidence 5799999999999999999999998531 235888888653211 110000 0 03578
Q ss_pred hhHHhhh-hhhccCCCCHHHHHHHHHHHHhhc---------CCccCHHHHHHHHHhcCC--CCHHHHHHHHHHH
Q 012326 345 MDLLDRL-LIISTKPYTRDEIRKILDIRCQEE---------DVEMAEDAKQLLTRVGEG--TSLRYAIHLITAA 406 (466)
Q Consensus 345 ~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~---------~~~i~~~~l~~l~~~a~~--g~~R~ai~lL~~a 406 (466)
|+|+.|+ .++.|.|++.+++.+|+...+.+. .+.++++++++|++.+.. .++|.+-++++..
T Consensus 638 pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~ 711 (758)
T PRK11034 638 PEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDN 711 (758)
T ss_pred HHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 9999999 588899999999999987665422 458899999999987632 4567666666543
No 137
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.62 E-value=1.5e-14 Score=161.71 Aligned_cols=125 Identities=19% Similarity=0.201 Sum_probs=86.2
Q ss_pred cceeeeeccccccH--------HHHHHHHHHhhhcCCCeEEEEeccceeEeeccccc----CCCCCChhHHhhhhhhccC
Q 012326 290 PGVLFIDEVHMLDV--------ECFSFLNRALENEMAPILVVATNRGITRIRGTNYK----SAHGIPMDLLDRLLIISTK 357 (466)
Q Consensus 290 ~~vl~iDEi~~l~~--------~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~----~~~~l~~~llsR~~~i~~~ 357 (466)
+.||||||+|.+.. +..+.|...++ +|...++|+++. ....+.++|.+||..|.++
T Consensus 281 ~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~------------~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~ 348 (852)
T TIGR03345 281 PIILFIDEAHTLIGAGGQAGQGDAANLLKPALA------------RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVE 348 (852)
T ss_pred CeEEEEeChHHhccCCCccccccHHHHhhHHhh------------CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeC
Confidence 57999999999953 11223433333 334444444433 2246789999999999999
Q ss_pred CCCHHHHHHHHHHHHhhc----CCccCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHhhh-cCCccCHHHHHHH
Q 012326 358 PYTRDEIRKILDIRCQEE----DVEMAEDAKQLLTRVGEG-----TSLRYAIHLITAAALASQKR-KGKVVEVQDIDRV 426 (466)
Q Consensus 358 pl~~~el~~iL~~~~~~~----~~~i~~~~l~~l~~~a~~-----g~~R~ai~lL~~a~~~a~~~-~~~~It~~~v~~~ 426 (466)
+|+.++...||....... ++.++++++..++.++.+ .=+.+|+.+|+.|+...... ....+..+++++.
T Consensus 349 eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~ 427 (852)
T TIGR03345 349 EPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRR 427 (852)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 999999999987665432 578999999999999831 33568999999987655433 3344444555433
No 138
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.6e-15 Score=143.23 Aligned_cols=83 Identities=24% Similarity=0.389 Sum_probs=67.5
Q ss_pred CCcCCcHHHHHHHHHHHHH-HHc---------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccC
Q 012326 40 EGMVGQLPARKAAGVILQM-IKE---------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM 109 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~-l~~---------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~ 109 (466)
..++||+++|+++..++.. |+. ... |+|||+.||+|+|||-+|+++|+..+ .||+++..+.|....+
T Consensus 15 ~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~-PKNILMIGpTGVGKTEIARRLAkl~~--aPFiKVEATKfTEVGY 91 (444)
T COG1220 15 RYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVT-PKNILMIGPTGVGKTEIARRLAKLAG--APFIKVEATKFTEVGY 91 (444)
T ss_pred hHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccC-ccceEEECCCCCcHHHHHHHHHHHhC--CCeEEEEeeeeeeccc
Confidence 5689999999999887753 332 233 59999999999999999999999999 8999999999999865
Q ss_pred CHHH---HHHHHHHHHHcc
Q 012326 110 SKTE---ALMQAFRKAIGV 125 (466)
Q Consensus 110 ~~~~---~l~~~~~~a~~~ 125 (466)
...+ .++++...++.+
T Consensus 92 VGrDVesivRDLve~av~l 110 (444)
T COG1220 92 VGRDVESIIRDLVEIAVKL 110 (444)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 4432 788888766653
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.61 E-value=4e-14 Score=146.93 Aligned_cols=127 Identities=15% Similarity=0.266 Sum_probs=96.7
Q ss_pred cceeeeeccccccH--HHHHHHHHHhhh---cCCCeEEEEeccceeEeecccccCC---CCCChhHHhhh---hhhccCC
Q 012326 290 PGVLFIDEVHMLDV--ECFSFLNRALEN---EMAPILVVATNRGITRIRGTNYKSA---HGIPMDLLDRL---LIISTKP 358 (466)
Q Consensus 290 ~~vl~iDEi~~l~~--~~~~~L~~~le~---~~~~iiil~tn~~~~~~~~~~~~~~---~~l~~~llsR~---~~i~~~p 358 (466)
..+|+|||+|.+.. ..+..+.+++.. ...+ +|++++. .| ..+.+.+.||+ ..+.+.|
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~-iiits~~-----------~p~~l~~l~~~l~SRl~~g~~v~i~~ 267 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQ-IVLTSDR-----------PPKELPGLEERLRSRFEWGLVVDIEP 267 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCC-EEEecCC-----------CHHHHhhhhhhhhhhccCCeEEEeCC
Confidence 35999999998843 233334443322 2233 4556654 13 24567899999 5689999
Q ss_pred CCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 359 YTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 359 l~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
|+.++...||+.+++..++.++++++++|++.. .+|+|.+...|......+.. .+..||.+.+++++...
T Consensus 268 pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~-~~~~r~l~~~l~~l~~~a~~-~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 268 PDLETRLAILQKKAEEEGLELPDEVLEFIAKNI-RSNVRELEGALNRLLAYASL-TGKPITLELAKEALKDL 337 (405)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999988 59999999999888777754 44669999998888754
No 140
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.61 E-value=1.7e-14 Score=148.76 Aligned_cols=64 Identities=28% Similarity=0.525 Sum_probs=49.7
Q ss_pred CCcCCcHHHHHHHHHHHHH----HHcC-------CCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecccee
Q 012326 40 EGMVGQLPARKAAGVILQM----IKEG-------KIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIF 105 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~----l~~~-------~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~ 105 (466)
+.|+||+++++.+...+.. +..+ ..+..++||+||||||||++|+++|+.++ .||+.++++.+.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~--~pf~~id~~~l~ 145 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD--VPFAIADATTLT 145 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC--CCceecchhhcc
Confidence 4589999999998776632 2221 12358999999999999999999999997 788887776543
No 141
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.4e-15 Score=160.39 Aligned_cols=216 Identities=22% Similarity=0.366 Sum_probs=150.8
Q ss_pred ccCCcCCcHHHHHHHHHHHHHHHcCC----CCCceEEEecCCCCChHHHHHHHHHHcCC-CCceEeeeccceecccCCHH
Q 012326 38 VSEGMVGQLPARKAAGVILQMIKEGK----IAGRAVLIAGQPGTGKTAIAMGMAKSLGL-ETPFAMISGSEIFSLEMSKT 112 (466)
Q Consensus 38 ~~~~lvG~~~~k~~l~~~l~~l~~~~----~~~~~iLL~GppGtGKT~lA~~ia~~l~~-~~p~~~i~~~~~~~~e~~~~ 112 (466)
+-..|+||+++..++...+..-+.|. .|-..+||.||+|+|||-+|+++|..+.. +.+++.++.|+|...
T Consensus 489 L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek----- 563 (786)
T COG0542 489 LKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK----- 563 (786)
T ss_pred HhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH-----
Confidence 33789999999999988888766544 44568889999999999999999998753 345555555544221
Q ss_pred HHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCCCeEEE
Q 012326 113 EALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSGDVIAI 192 (466)
Q Consensus 113 ~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~i 192 (466)
T Consensus 564 -------------------------------------------------------------------------------- 563 (786)
T COG0542 564 -------------------------------------------------------------------------------- 563 (786)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchhHHHHHH
Q 012326 193 DKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQ 272 (466)
Q Consensus 193 ~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~~~~r~~ 272 (466)
|-+.-+...|.||.+.-.| +.+++.+|..
T Consensus 564 -------------------------------------------------HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~ 592 (786)
T COG0542 564 -------------------------------------------------HSVSRLIGAPPGYVGYEEG--GQLTEAVRRK 592 (786)
T ss_pred -------------------------------------------------HHHHHHhCCCCCCceeccc--cchhHhhhcC
Confidence 1111122224456554444 3344444332
Q ss_pred HHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcC-----------C-CeEEEEeccceeEeeccc----
Q 012326 273 IDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEM-----------A-PILVVATNRGITRIRGTN---- 336 (466)
Q Consensus 273 i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~-~iiil~tn~~~~~~~~~~---- 336 (466)
.++|+++|||++.+++.++.|++++++.. . .++||+||-|...+....
T Consensus 593 ----------------PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~ 656 (786)
T COG0542 593 ----------------PYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDD 656 (786)
T ss_pred ----------------CCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccc
Confidence 27899999999999999999999998642 2 358888887743322110
Q ss_pred ----------ccCC--CCCChhHHhhhh-hhccCCCCHHHHHHHHHHHHhhc---------CCccCHHHHHHHHHhcC--
Q 012326 337 ----------YKSA--HGIPMDLLDRLL-IISTKPYTRDEIRKILDIRCQEE---------DVEMAEDAKQLLTRVGE-- 392 (466)
Q Consensus 337 ----------~~~~--~~l~~~llsR~~-~i~~~pl~~~el~~iL~~~~~~~---------~~~i~~~~l~~l~~~a~-- 392 (466)
.... ..++|+|+.|+- +|.|.|++.+++.+|+...++.. .+++++++.++|++.+.
T Consensus 657 ~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~ 736 (786)
T COG0542 657 FADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDP 736 (786)
T ss_pred cchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCC
Confidence 0001 456789999994 89999999999999987665533 35889999999999874
Q ss_pred CCCHHHHHHHHHH
Q 012326 393 GTSLRYAIHLITA 405 (466)
Q Consensus 393 ~g~~R~ai~lL~~ 405 (466)
..++|-+.++++.
T Consensus 737 ~~GARpL~R~Iq~ 749 (786)
T COG0542 737 EYGARPLRRAIQQ 749 (786)
T ss_pred CcCchHHHHHHHH
Confidence 2556777777664
No 142
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.58 E-value=7.2e-14 Score=144.45 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=95.7
Q ss_pred ceeeeeccccccHHHHHHHHHHhhhcC-----------CCeEEEEeccceeEeecccccC-CCCCChhHHhhh-hhhccC
Q 012326 291 GVLFIDEVHMLDVECFSFLNRALENEM-----------APILVVATNRGITRIRGTNYKS-AHGIPMDLLDRL-LIISTK 357 (466)
Q Consensus 291 ~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~iiil~tn~~~~~~~~~~~~~-~~~l~~~llsR~-~~i~~~ 357 (466)
.++|+||++++++..++.|+.++++.. .++++.+||. .+ .....+++.+|+ ..+.++
T Consensus 109 ~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~----------LPE~g~~leAL~DRFliri~vp 178 (498)
T PRK13531 109 EIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE----------LPEADSSLEALYDRMLIRLWLD 178 (498)
T ss_pred cEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC----------CcccCCchHHhHhhEEEEEECC
Confidence 499999999999999999999996532 2445556542 00 123345899999 567788
Q ss_pred CCC-HHHHHHHHHHHHh-----------------------hcCCccCHHHHHHHHHhcC-----C----CCHHHHHHHHH
Q 012326 358 PYT-RDEIRKILDIRCQ-----------------------EEDVEMAEDAKQLLTRVGE-----G----TSLRYAIHLIT 404 (466)
Q Consensus 358 pl~-~~el~~iL~~~~~-----------------------~~~~~i~~~~l~~l~~~a~-----~----g~~R~ai~lL~ 404 (466)
|++ .++..++|..... ...+.+++.+.++|+++.. + -+.|..+.++.
T Consensus 179 ~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~ 258 (498)
T PRK13531 179 KVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIR 258 (498)
T ss_pred CCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 886 4555777754211 1157899999999988852 1 47899999999
Q ss_pred HHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 405 AAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 405 ~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
.+.+.|-.+|+..|+++||. ++.-.
T Consensus 259 ~akA~A~l~GR~~V~p~Dv~-ll~~v 283 (498)
T PRK13531 259 LLQASAFFSGRDAIAPIDLI-LLKDC 283 (498)
T ss_pred HHHHHHHHCCCCCCCHHHHH-HhHHH
Confidence 99999999999999999999 55433
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.58 E-value=2e-14 Score=160.62 Aligned_cols=117 Identities=13% Similarity=0.238 Sum_probs=88.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC------------CCeEEEEeccceeEeec----ccc-cC------------C
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM------------APILVVATNRGITRIRG----TNY-KS------------A 340 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~------------~~iiil~tn~~~~~~~~----~~~-~~------------~ 340 (466)
++|++|||++.++++.++.|++++++.. ..+||++||.+...+.. ... .. -
T Consensus 669 ~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (852)
T TIGR03345 669 YSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELL 748 (852)
T ss_pred CcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHH
Confidence 6899999999999999999999998652 24588888875422110 000 00 0
Q ss_pred CCCChhHHhhhhhhccCCCCHHHHHHHHHHHHhhc--------C--CccCHHHHHHHHHhcCC--CCHHHHHHHHHHH
Q 012326 341 HGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEE--------D--VEMAEDAKQLLTRVGEG--TSLRYAIHLITAA 406 (466)
Q Consensus 341 ~~l~~~llsR~~~i~~~pl~~~el~~iL~~~~~~~--------~--~~i~~~~l~~l~~~a~~--g~~R~ai~lL~~a 406 (466)
..++|+|++||.++.|.|++.+++.+|+...++.. + +.++++++++|++.+.. -++|.+.++++..
T Consensus 749 ~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 749 KVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred HhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 24678999999999999999999999997765431 3 57899999999998842 2789988888764
No 144
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=1.8e-13 Score=143.20 Aligned_cols=128 Identities=17% Similarity=0.314 Sum_probs=96.7
Q ss_pred cceeeeecccccc--HHHHHHHHHHhh---hcCCCeEEEEeccceeEeecccccCC---CCCChhHHhhh---hhhccCC
Q 012326 290 PGVLFIDEVHMLD--VECFSFLNRALE---NEMAPILVVATNRGITRIRGTNYKSA---HGIPMDLLDRL---LIISTKP 358 (466)
Q Consensus 290 ~~vl~iDEi~~l~--~~~~~~L~~~le---~~~~~iiil~tn~~~~~~~~~~~~~~---~~l~~~llsR~---~~i~~~p 358 (466)
..+|+|||+|.+. ...+..|..++. +... .+|++++. +| ..+.+.|.+|+ .++.+.|
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k-~iIltsd~-----------~P~~l~~l~~rL~SR~~~Gl~~~L~~ 274 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDK-QLFFSSDK-----------SPELLNGFDNRLITRFNMGLSIAIQK 274 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCC-cEEEECCC-----------CHHHHhhccHHHHHHHhCCceeccCC
Confidence 4699999999986 344444444433 2222 35666665 23 34567899999 6888999
Q ss_pred CCHHHHHHHHHHHHhhcCC--ccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhc-CCccCHHHHHHHHHHH
Q 012326 359 YTRDEIRKILDIRCQEEDV--EMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRK-GKVVEVQDIDRVYRLF 430 (466)
Q Consensus 359 l~~~el~~iL~~~~~~~~~--~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~-~~~It~~~v~~~~~~~ 430 (466)
|+.++...||+..++..++ .++++++++|+..+ .||+|.+.++|..+...+.... +..||.+.+++++.-+
T Consensus 275 pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~-~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 275 LDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYY-SDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 9999999999999998775 79999999999998 5999999999998875554432 3678888888877543
No 145
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=1.6e-13 Score=131.57 Aligned_cols=116 Identities=15% Similarity=0.132 Sum_probs=86.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCC---------
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPY--------- 359 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl--------- 359 (466)
++|++||++|+|+.++.++|+|++|+|+..+ ||++|+. +..++++++|||+.+.|.++
T Consensus 89 ~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~------------~~~lLpTI~SRCq~~~~~~~~~~~~~~~~ 156 (261)
T PRK05818 89 KKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRN------------ENNILNTILSRCVQYVVLSKEKKVPFKVE 156 (261)
T ss_pred CEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECC------------hHhCchHhhhheeeeecCChhhhcccccc
Confidence 6799999999999999999999999998866 8888876 88999999999999999887
Q ss_pred -CHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHH
Q 012326 360 -TRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQ 434 (466)
Q Consensus 360 -~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~ 434 (466)
++.++.+.+... ..+++ .++..+ +|++..|+.+++. +. .. .-....|.++...|.+..
T Consensus 157 ~~~~~i~~~L~~~-----~~~d~----~i~~~a-~g~~~~a~~l~~~---l~-n~---~~~~~~v~kl~~~~~~~~ 215 (261)
T PRK05818 157 SNDRYFQYILLSF-----YSVDE----QLQAYN-NGSFSKLKNIIET---LI-NK---KNKLIQIHKAWILFKTFS 215 (261)
T ss_pred cChHHHHHHHHHc-----cCccH----HHHHHc-CCCHHHHHHHHHH---HH-cc---cccHHHHHHHHHHHHhhh
Confidence 555666665542 22444 555556 6999999999983 22 22 222344555565555443
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.57 E-value=3.2e-14 Score=157.68 Aligned_cols=117 Identities=22% Similarity=0.374 Sum_probs=85.9
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhc-----------CC-CeEEEEeccceeEee----cccccC---------CCCCC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENE-----------MA-PILVVATNRGITRIR----GTNYKS---------AHGIP 344 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~-----------~~-~iiil~tn~~~~~~~----~~~~~~---------~~~l~ 344 (466)
++|++|||+++++++.++.|++++++. .. .+||++||.|...+. |..... -..++
T Consensus 554 ~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~ 633 (731)
T TIGR02639 554 HCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFS 633 (731)
T ss_pred CeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcC
Confidence 679999999999999999999999864 12 348888887632211 000000 03467
Q ss_pred hhHHhhh-hhhccCCCCHHHHHHHHHHHHhhc---------CCccCHHHHHHHHHhcC--CCCHHHHHHHHHHH
Q 012326 345 MDLLDRL-LIISTKPYTRDEIRKILDIRCQEE---------DVEMAEDAKQLLTRVGE--GTSLRYAIHLITAA 406 (466)
Q Consensus 345 ~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~---------~~~i~~~~l~~l~~~a~--~g~~R~ai~lL~~a 406 (466)
|+|++|+ .++.|.||+.+++.+|+...++.. .+.++++++++|++.+. .-++|.+-++++..
T Consensus 634 pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 634 PEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred hHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 8999999 689999999999999998876532 36889999999999752 35567766666553
No 147
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.4e-15 Score=141.47 Aligned_cols=174 Identities=18% Similarity=0.251 Sum_probs=125.8
Q ss_pred ccCCcCCcHHHHHHHHHHHHH-H-------HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccC
Q 012326 38 VSEGMVGQLPARKAAGVILQM-I-------KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM 109 (466)
Q Consensus 38 ~~~~lvG~~~~k~~l~~~l~~-l-------~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~ 109 (466)
.++++-|.-...+++.+.+.. + +-|..+|.+++||||||+|||.+|+++|..++ ++|..+..+++.+.++
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg--~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG--VNFLKVVSSALVDKYI 207 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC--CceEEeeHhhhhhhhc
Confidence 458888888888888776643 1 22667789999999999999999999999999 7899999999999999
Q ss_pred CHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCCC
Q 012326 110 SKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSGD 188 (466)
Q Consensus 110 ~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d 188 (466)
+++. .+++.|+.|..+. ||+||+||||++.+.+...+..+.+..+ .++.++.. ++ .+...-.
T Consensus 208 GEsaRlIRemf~yA~~~~---pciifmdeiDAigGRr~se~Ts~dreiq--------rTLMeLln----qm--dgfd~l~ 270 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVI---PCIIFMDEIDAIGGRRFSEGTSSDREIQ--------RTLMELLN----QM--DGFDTLH 270 (388)
T ss_pred ccHHHHHHHHHHHHhhhC---ceEEeehhhhhhccEEeccccchhHHHH--------HHHHHHHH----hh--ccchhcc
Confidence 9998 8999999888764 9999999999998777322211011000 11222222 22 1111122
Q ss_pred eEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhh
Q 012326 189 VIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVV 236 (466)
Q Consensus 189 ~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~ 236 (466)
-+-+..+||+++-+++++.||+|+|. ++..|-.+..+|..+.
T Consensus 271 rVk~ImatNrpdtLdpaLlRpGRldr------k~~iPlpne~~r~~I~ 312 (388)
T KOG0651|consen 271 RVKTIMATNRPDTLDPALLRPGRLDR------KVEIPLPNEQARLGIL 312 (388)
T ss_pred cccEEEecCCccccchhhcCCccccc------eeccCCcchhhceeeE
Confidence 35677899999999999999999999 3333333555554433
No 148
>PRK09087 hypothetical protein; Validated
Probab=99.57 E-value=2.6e-13 Score=129.52 Aligned_cols=126 Identities=11% Similarity=0.088 Sum_probs=94.3
Q ss_pred ceeeeecccccc--HHH-HHHHHHHhhhcCCCeEEEEeccceeEeecccccCC--CCCChhHHhhh---hhhccCCCCHH
Q 012326 291 GVLFIDEVHMLD--VEC-FSFLNRALENEMAPILVVATNRGITRIRGTNYKSA--HGIPMDLLDRL---LIISTKPYTRD 362 (466)
Q Consensus 291 ~vl~iDEi~~l~--~~~-~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~--~~l~~~llsR~---~~i~~~pl~~~ 362 (466)
++++||++|.+. .+. +..++...+. ..+ ++++++. .++ ....++|+||| .++++.|++.+
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~-g~~-ilits~~----------~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e 156 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQA-GTS-LLMTSRL----------WPSSWNVKLPDLKSRLKAATVVEIGEPDDA 156 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhC-CCe-EEEECCC----------ChHHhccccccHHHHHhCCceeecCCCCHH
Confidence 478899999863 222 3333333332 233 4455543 111 23367899999 89999999999
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 363 EIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 363 el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
++..+|++.++..++.++++++++|++.+ .|++|.+..++......+.. .+..||...+++++..+
T Consensus 157 ~~~~iL~~~~~~~~~~l~~ev~~~La~~~-~r~~~~l~~~l~~L~~~~~~-~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 157 LLSQVIFKLFADRQLYVDPHVVYYLVSRM-ERSLFAAQTIVDRLDRLALE-RKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999998 59999999988887666643 34679999999988654
No 149
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=1.4e-13 Score=143.92 Aligned_cols=127 Identities=18% Similarity=0.237 Sum_probs=94.8
Q ss_pred cceeeeeccccccH--HHHHHHHHHhh---hcCCCeEEEEeccceeEeecccccCCC---CCChhHHhhhh---hhccCC
Q 012326 290 PGVLFIDEVHMLDV--ECFSFLNRALE---NEMAPILVVATNRGITRIRGTNYKSAH---GIPMDLLDRLL---IISTKP 358 (466)
Q Consensus 290 ~~vl~iDEi~~l~~--~~~~~L~~~le---~~~~~iiil~tn~~~~~~~~~~~~~~~---~l~~~llsR~~---~i~~~p 358 (466)
..+|+|||+|.+.. ..+..+...+. +... .++++++. +|. .+.+.+.|||. .+.+.|
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k-~iIitsd~-----------~p~~l~~l~~rL~SR~~~gl~v~i~~ 262 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGK-QIVICSDR-----------EPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCC-eEEEECCC-----------CHHHHHHHHHHHhhHHhcCceEeeCC
Confidence 46999999998742 22333333332 2222 35555543 232 34567899994 888999
Q ss_pred CCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 359 YTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 359 l~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
|+.+....||+..++..++.++++++++|++.. .||+|.+...|......+... +..||.+.+++++.-+
T Consensus 263 pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~-~~~~R~L~g~l~~l~~~~~~~-~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 263 PDEETRKKIARKMLEIEHGELPEEVLNFVAENV-DDNLRRLRGAIIKLLVYKETT-GEEVDLKEAILLLKDF 332 (440)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcc-ccCHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999998 599999999998887666544 4568888888887654
No 150
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=2.7e-13 Score=141.44 Aligned_cols=127 Identities=17% Similarity=0.322 Sum_probs=95.9
Q ss_pred cceeeeeccccccH--HHHHHHHHHhh---hcCCCeEEEEeccceeEeecccccCC---CCCChhHHhhh---hhhccCC
Q 012326 290 PGVLFIDEVHMLDV--ECFSFLNRALE---NEMAPILVVATNRGITRIRGTNYKSA---HGIPMDLLDRL---LIISTKP 358 (466)
Q Consensus 290 ~~vl~iDEi~~l~~--~~~~~L~~~le---~~~~~iiil~tn~~~~~~~~~~~~~~---~~l~~~llsR~---~~i~~~p 358 (466)
..+|+|||+|.+.. ..+..+...+. .... .+|++++. .| ..+.+.+.||| ..+.+.|
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k-~IIlts~~-----------~p~~l~~l~~rL~SR~~~Gl~~~l~~ 270 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGK-LIVISSTC-----------APQDLKAMEERLISRFEWGIAIPLHP 270 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCC-cEEEecCC-----------CHHHHhhhHHHHHhhhcCCeEEecCC
Confidence 56999999999853 33334433322 2222 35566654 13 35668999999 7899999
Q ss_pred CCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHH---HHHhhhcCCccCHHHHHHHHHHH
Q 012326 359 YTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAA---LASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 359 l~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~---~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
|+.++...||+..++..++.++++++++|+... .+|+|.+.+.|...+ +.+... +..||.+.+++++.-+
T Consensus 271 pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~-~~dir~L~g~l~~l~~~~a~~~~~-~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 271 LTKEGLRSFLERKAEALSIRIEETALDFLIEAL-SSNVKSLLHALTLLAKRVAYKKLS-HQLLYVDDIKALLHDV 343 (445)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999987 599999999999885 444333 3568888888887644
No 151
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=2.6e-13 Score=133.24 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=77.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++||++|+|+..+.|+|+|++|+|+..+ ||++|+. +..+++|++|||..++|.+ +.+++.++|
T Consensus 105 ~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~------------~~~lLpTI~SRcq~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 105 QQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTND------------ENKVLPTIKSRTQIFHFPK-NEAYLIQLL 171 (290)
T ss_pred cEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECC------------hhhCchHHHHcceeeeCCC-cHHHHHHHH
Confidence 6799999999999999999999999998755 8888876 8899999999999999977 777777777
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLIT 404 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~ 404 (466)
.. .+ ++.+....++..+ |++..|+.+++
T Consensus 172 ~~----~g--~~~~~a~~la~~~--~s~~~A~~l~~ 199 (290)
T PRK07276 172 EQ----KG--LLKTQAELLAKLA--QSTSEAEKLAQ 199 (290)
T ss_pred HH----cC--CChHHHHHHHHHC--CCHHHHHHHhC
Confidence 53 34 4555556666665 68888888873
No 152
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.54 E-value=2.7e-13 Score=150.20 Aligned_cols=127 Identities=21% Similarity=0.276 Sum_probs=85.7
Q ss_pred cceeeeeccccccHHH----HHHHHHHhhhc---------------CCCeEEEEeccceeEeecccccCCCCCChhHHhh
Q 012326 290 PGVLFIDEVHMLDVEC----FSFLNRALENE---------------MAPILVVATNRGITRIRGTNYKSAHGIPMDLLDR 350 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~----~~~L~~~le~~---------------~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR 350 (466)
..|++|||+|++.... +++|+.+++.. .+.+++++|.+ ...+|++|++|
T Consensus 417 ~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN------------~~~i~~aLl~R 484 (784)
T PRK10787 417 NPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSN------------SMNIPAPLLDR 484 (784)
T ss_pred CCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCC------------CCCCCHHHhcc
Confidence 4599999999997754 58888888641 13343333322 44799999999
Q ss_pred hhhhccCCCCHHHHHHHHHHHHhh----------cCCccCHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhh----hcC
Q 012326 351 LLIISTKPYTRDEIRKILDIRCQE----------EDVEMAEDAKQLLTRVG-EGTSLRYAIHLITAAALASQK----RKG 415 (466)
Q Consensus 351 ~~~i~~~pl~~~el~~iL~~~~~~----------~~~~i~~~~l~~l~~~a-~~g~~R~ai~lL~~a~~~a~~----~~~ 415 (466)
|.++.|.+|+.+++.+|.+..+.. ..+.++++++++|++.. .+-++|.+-+.++..+..... .+.
T Consensus 485 ~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~ 564 (784)
T PRK10787 485 MEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKS 564 (784)
T ss_pred eeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999998877741 13689999999999743 234566666666554422211 111
Q ss_pred ---CccCHHHHHHHHH
Q 012326 416 ---KVVEVQDIDRVYR 428 (466)
Q Consensus 416 ---~~It~~~v~~~~~ 428 (466)
-.|+.+++...++
T Consensus 565 ~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 565 LKHIEINGDNLHDYLG 580 (784)
T ss_pred CceeeecHHHHHHHhC
Confidence 2466666655543
No 153
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=6e-13 Score=141.55 Aligned_cols=131 Identities=14% Similarity=0.200 Sum_probs=98.0
Q ss_pred cceeeeeccccccH--HHHHHHHHHhh---hcCCCeEEEEeccceeEeecccccCCCCCChhHHhhh---hhhccCCCCH
Q 012326 290 PGVLFIDEVHMLDV--ECFSFLNRALE---NEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRL---LIISTKPYTR 361 (466)
Q Consensus 290 ~~vl~iDEi~~l~~--~~~~~L~~~le---~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~---~~i~~~pl~~ 361 (466)
..+|+||+++.+.. ..+..|.+++. +...+ +|+++|..... ...+.+.|.||+ .++.+.+++.
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~-IIITSd~~P~e--------L~~l~~rL~SRf~~GLvv~I~~PD~ 448 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQ-IVLSSDRPPKQ--------LVTLEDRLRNRFEWGLITDVQPPEL 448 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCC-EEEecCCChHh--------hhhccHHHHhhhhcCceEEcCCCCH
Confidence 46999999999843 22333333332 22233 55677651100 135678899999 7789999999
Q ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHH
Q 012326 362 DEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFL 431 (466)
Q Consensus 362 ~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~ 431 (466)
+....||+..+...++.++++++++|+... .+|+|.+..+|.....++... +..||.+.+++++..+.
T Consensus 449 EtR~aIL~kka~~r~l~l~~eVi~yLa~r~-~rnvR~LegaL~rL~a~a~~~-~~~itl~la~~vL~~~~ 516 (617)
T PRK14086 449 ETRIAILRKKAVQEQLNAPPEVLEFIASRI-SRNIRELEGALIRVTAFASLN-RQPVDLGLTEIVLRDLI 516 (617)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhh
Confidence 999999999999999999999999999988 599999999999887777544 45688888888887553
No 154
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=7.1e-13 Score=129.76 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=68.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++||++|.|+.++.++|+|++|+|+..+ ||++|+. +..++++++|||..++|.|+.
T Consensus 96 ~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~------------~~~ll~TI~SRcq~~~~~~~~-------- 155 (290)
T PRK05917 96 YKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAK------------PQRLPPTIRSRSLSIHIPMEE-------- 155 (290)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCC------------hhhCcHHHHhcceEEEccchh--------
Confidence 6799999999999999999999999998876 8888876 889999999999999999862
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLR 397 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R 397 (466)
...++++....++..+ .|++.
T Consensus 156 -------~~~i~~~~~~~l~~~~-~g~~~ 176 (290)
T PRK05917 156 -------KTLVSKEDIAYLIGYA-QGKES 176 (290)
T ss_pred -------ccCCCHHHHHHHHHHh-CCChh
Confidence 2247778888888877 47774
No 155
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.54 E-value=5.6e-12 Score=123.31 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=96.5
Q ss_pred cceeeeeccccccHHHHHHHHHHhhh---cCCCe-EEEEeccceeEeecccccCCCCCChhHHhhh-hhhccCCCCHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALEN---EMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIISTKPYTRDEI 364 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~---~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~~~pl~~~el 364 (466)
..+++|||+|.++......|....+. ....+ ++++.... +. .... ..-..++.+|+ ..+++.|++.+++
T Consensus 124 ~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~---~~--~~l~-~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 124 RALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE---FR--ETLQ-SPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred CeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH---HH--HHHc-CchhHHHHhheeeeeeCCCCCHHHH
Confidence 56999999999998877766544332 11222 23332210 00 0000 01123577785 6788999999999
Q ss_pred HHHHHHHHhhcC----CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 365 RKILDIRCQEED----VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 365 ~~iL~~~~~~~~----~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
.+++..++...+ ..+++++++.|++.+ +|++|.+..++..+...|...+...|+.++|+.++...
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s-~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFS-RGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHc-CCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999887654 479999999999999 59999988888888877777788999999999998653
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.53 E-value=1.5e-13 Score=154.04 Aligned_cols=117 Identities=21% Similarity=0.279 Sum_probs=85.2
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhc-----------CC-CeEEEEeccceeEe-------eccccc----C-------
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENE-----------MA-PILVVATNRGITRI-------RGTNYK----S------- 339 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~-----------~~-~iiil~tn~~~~~~-------~~~~~~----~------- 339 (466)
++|+++||++++++++++.|++++++. .. .+||++||.+...+ .+.... .
T Consensus 612 ~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~ 691 (821)
T CHL00095 612 YTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLS 691 (821)
T ss_pred CeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHH
Confidence 579999999999999999999999873 22 35888888764311 111000 0
Q ss_pred -------CCCCChhHHhhh-hhhccCCCCHHHHHHHHHHHHhhc---------CCccCHHHHHHHHHhcC--CCCHHHHH
Q 012326 340 -------AHGIPMDLLDRL-LIISTKPYTRDEIRKILDIRCQEE---------DVEMAEDAKQLLTRVGE--GTSLRYAI 400 (466)
Q Consensus 340 -------~~~l~~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~---------~~~i~~~~l~~l~~~a~--~g~~R~ai 400 (466)
-..++|+|++|+ .++.|.|++.+++.+|+...++.. .+.++++++++|++.+. .-++|.+-
T Consensus 692 ~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~ 771 (821)
T CHL00095 692 NLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLR 771 (821)
T ss_pred HHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHH
Confidence 013568999999 889999999999999987766532 35889999999999752 24567666
Q ss_pred HHHHHH
Q 012326 401 HLITAA 406 (466)
Q Consensus 401 ~lL~~a 406 (466)
++++..
T Consensus 772 r~i~~~ 777 (821)
T CHL00095 772 RAIMRL 777 (821)
T ss_pred HHHHHH
Confidence 666543
No 157
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.53 E-value=2.6e-13 Score=147.90 Aligned_cols=136 Identities=22% Similarity=0.291 Sum_probs=100.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------------CCeEEEEeccceeEeecccccCCCCCChhHHhhh-hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------------APILVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------------~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~ 355 (466)
.+++||||++.++...++.|+..+++.. ..+.+++|.+ .....++++|++|| +.+.
T Consensus 127 ~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~n----------p~eg~l~~~L~dR~~l~i~ 196 (633)
T TIGR02442 127 RGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMN----------PEEGDLRPQLLDRFGLCVD 196 (633)
T ss_pred CCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecC----------CCCCCCCHHHHhhcceEEE
Confidence 5799999999999999999999998642 1232222211 11256889999999 4555
Q ss_pred cCCCC-HHHHHHHHHHHH-----------------------------hhcCCccCHHHHHHHHHhcCC---CCHHHHHHH
Q 012326 356 TKPYT-RDEIRKILDIRC-----------------------------QEEDVEMAEDAKQLLTRVGEG---TSLRYAIHL 402 (466)
Q Consensus 356 ~~pl~-~~el~~iL~~~~-----------------------------~~~~~~i~~~~l~~l~~~a~~---g~~R~ai~l 402 (466)
+.++. .++..+++.... ....+.++++++++++..+.. .++|..+.+
T Consensus 197 v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~ 276 (633)
T TIGR02442 197 VAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVM 276 (633)
T ss_pred ccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 55543 344344443211 111478899999999988622 368999999
Q ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHH
Q 012326 403 ITAAALASQKRKGKVVEVQDIDRVYRLFLDVQR 435 (466)
Q Consensus 403 L~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~ 435 (466)
++.|.++|..+++..|+.+||+.++.+.+.+..
T Consensus 277 ~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 277 ARAARALAALDGRRRVTAEDVREAAELVLPHRR 309 (633)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999999988775
No 158
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.53 E-value=7.8e-13 Score=139.11 Aligned_cols=154 Identities=20% Similarity=0.290 Sum_probs=117.3
Q ss_pred ccccceeeeeccccccHHHHHHHHHHhhhcCCC---e-EEEEeccceeEeecccccCCCCCChhHH-----hhh--hhhc
Q 012326 287 EIVPGVLFIDEVHMLDVECFSFLNRALENEMAP---I-LVVATNRGITRIRGTNYKSAHGIPMDLL-----DRL--LIIS 355 (466)
Q Consensus 287 ~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~---i-iil~tn~~~~~~~~~~~~~~~~l~~~ll-----sR~--~~i~ 355 (466)
.....|++|||.|.|....+..|+.+.+.+..+ + +|.++| ...+|+.++ ||+ .++.
T Consensus 506 ~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN-------------TmdlPEr~l~nrvsSRlg~tRi~ 572 (767)
T KOG1514|consen 506 KRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN-------------TMDLPERLLMNRVSSRLGLTRIC 572 (767)
T ss_pred CCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc-------------cccCHHHHhccchhhhccceeee
Confidence 334789999999999888888888888876643 3 444454 346666554 565 7899
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhhhcC-------CccCHHHHHHH
Q 012326 356 TKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVG--EGTSLRYAIHLITAAALASQKRKG-------KVVEVQDIDRV 426 (466)
Q Consensus 356 ~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a--~~g~~R~ai~lL~~a~~~a~~~~~-------~~It~~~v~~~ 426 (466)
|.||+.+|+.+|+..+++.. -.|+.++++++++.. ..||+|.|+.++++|...|..+.. ..|++-||..|
T Consensus 573 F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~A 651 (767)
T KOG1514|consen 573 FQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEA 651 (767)
T ss_pred cCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHH
Confidence 99999999999999987754 467888888887663 249999999999999999976554 66899999999
Q ss_pred HHHHHhHHH--HHHHHHHHHHHHHhhhhhc
Q 012326 427 YRLFLDVQR--STQYLMEYQSQYINEVTIE 454 (466)
Q Consensus 427 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 454 (466)
+.-+++.-. ..+.+..+++-++-.+-.+
T Consensus 652 i~em~~~~~~~~i~glS~~~k~fl~ai~~e 681 (767)
T KOG1514|consen 652 INEMLASPYIKALKGLSFLQKIFLTAIVAE 681 (767)
T ss_pred HHHHhhhhHHHHhcchHHHHHHHHHHHHHH
Confidence 986666544 5677788888776444433
No 159
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.53 E-value=2.2e-13 Score=139.91 Aligned_cols=66 Identities=15% Similarity=0.301 Sum_probs=50.0
Q ss_pred CCChhHHhhh-hhhccCCCCHHHHHHHHHHH----Hhh-------cC--CccCHHHHHHHHHhcC--CCCHHHHHHHHHH
Q 012326 342 GIPMDLLDRL-LIISTKPYTRDEIRKILDIR----CQE-------ED--VEMAEDAKQLLTRVGE--GTSLRYAIHLITA 405 (466)
Q Consensus 342 ~l~~~llsR~-~~i~~~pl~~~el~~iL~~~----~~~-------~~--~~i~~~~l~~l~~~a~--~g~~R~ai~lL~~ 405 (466)
++.|+|+.|+ .++.|.|++.+++.+|+... .++ .+ +.++++++++|++.+. .-++|.+-.+++.
T Consensus 300 g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~ 379 (413)
T TIGR00382 300 GLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEG 379 (413)
T ss_pred hhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHH
Confidence 4678999999 56779999999999998763 221 13 5889999999999863 3567777777766
Q ss_pred HH
Q 012326 406 AA 407 (466)
Q Consensus 406 a~ 407 (466)
..
T Consensus 380 ~l 381 (413)
T TIGR00382 380 LL 381 (413)
T ss_pred hh
Confidence 54
No 160
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.52 E-value=3.6e-13 Score=128.06 Aligned_cols=109 Identities=22% Similarity=0.347 Sum_probs=78.6
Q ss_pred cceeeeeccccccHH--HHHHHHHHhhh---cCCCeEEEEeccceeEeecccccCC---CCCChhHHhhh---hhhccCC
Q 012326 290 PGVLFIDEVHMLDVE--CFSFLNRALEN---EMAPILVVATNRGITRIRGTNYKSA---HGIPMDLLDRL---LIISTKP 358 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~--~~~~L~~~le~---~~~~iiil~tn~~~~~~~~~~~~~~---~~l~~~llsR~---~~i~~~p 358 (466)
..+++||++|.+... .+..|.+++.. ... -+|++++. .| ..+.+.|.||+ ..+++.|
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k-~li~ts~~-----------~P~~l~~~~~~L~SRl~~Gl~~~l~~ 165 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGK-QLILTSDR-----------PPSELSGLLPDLRSRLSWGLVVELQP 165 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTS-EEEEEESS------------TTTTTTS-HHHHHHHHCSEEEEE--
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCC-eEEEEeCC-----------CCccccccChhhhhhHhhcchhhcCC
Confidence 569999999999653 24555555443 223 35566654 24 34568899999 6789999
Q ss_pred CCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 012326 359 YTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ 411 (466)
Q Consensus 359 l~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~ 411 (466)
|+.++..++|+..+...++.++++++++|++.. .+|+|.+..+|....+.++
T Consensus 166 pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~-~~~~r~L~~~l~~l~~~~~ 217 (219)
T PF00308_consen 166 PDDEDRRRILQKKAKERGIELPEEVIEYLARRF-RRDVRELEGALNRLDAYAQ 217 (219)
T ss_dssp --HHHHHHHHHHHHHHTT--S-HHHHHHHHHHT-TSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhh-cCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998 5999999999998876653
No 161
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.52 E-value=5.6e-13 Score=140.89 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=58.4
Q ss_pred CCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCC
Q 012326 26 GLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLE 93 (466)
Q Consensus 26 ~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~ 93 (466)
...|.++|+|+.. +||+-+..-.+.++.+++....+..+.+.+||+||||||||++++.+|++++.+
T Consensus 6 ~~~W~~ky~P~~~-~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~ 72 (519)
T PF03215_consen 6 SEPWVEKYAPKTL-DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFE 72 (519)
T ss_pred cCccchhcCCCCH-HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4689999999999 999999888888888888765566556788899999999999999999999854
No 162
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9.8e-14 Score=140.15 Aligned_cols=162 Identities=19% Similarity=0.195 Sum_probs=117.3
Q ss_pred cCCCCCCC--CCcccccCCcCCcHHHHHHHHHHHHHHHc--------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCC
Q 012326 25 RGLGLDSS--LEARDVSEGMVGQLPARKAAGVILQMIKE--------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLET 94 (466)
Q Consensus 25 ~~~~~~~~--~~p~~~~~~lvG~~~~k~~l~~~l~~l~~--------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~ 94 (466)
++..|... ..| +.|+.|+-.++.|+.+..-++.+.+ |++=.++.|||||||||||+++-|||++++++
T Consensus 185 ~~~~W~~v~f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~yd- 262 (457)
T KOG0743|consen 185 KGGEWRSVGFPHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYD- 262 (457)
T ss_pred cCCcceecCCCCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCc-
Confidence 34455433 344 4559999999999988766665433 55557999999999999999999999999854
Q ss_pred ceEeeeccceeccc---CCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCC---CCCC-CceeeEEEeeeccchh
Q 012326 95 PFAMISGSEIFSLE---MSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPA---TSGA-AAKTGKLTLKTTEMET 167 (466)
Q Consensus 95 p~~~i~~~~~~~~e---~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~---~~~g-~~~~~~~~l~~~~~~~ 167 (466)
++.++ +.....++.++...- +.+||++.+|||-..-+.. ...+ ......++| .+
T Consensus 263 ---------IydLeLt~v~~n~dLr~LL~~t~-----~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTl-----SG 323 (457)
T KOG0743|consen 263 ---------IYDLELTEVKLDSDLRHLLLATP-----NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTL-----SG 323 (457)
T ss_pred ---------eEEeeeccccCcHHHHHHHHhCC-----CCcEEEEeecccccccccccccccccccCCcceeeh-----HH
Confidence 23333 333335888887544 4899999999997543321 1111 112344554 67
Q ss_pred HhhhhhHHHHHhhhcccCCCCeEEEEccCCCcccccccccccccccc
Q 012326 168 VYDLGGKMIEALGKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDA 214 (466)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~ 214 (466)
+++.-.++|.+. |+.-+|..+||+++++|+|+.||||.|+
T Consensus 324 LLNfiDGlwSsc-------g~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 324 LLNFLDGLWSSC-------GDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred hhhhhccccccC-------CCceEEEEecCChhhcCHhhcCCCccee
Confidence 777888888887 6666788899999999999999999999
No 163
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.5e-13 Score=141.44 Aligned_cols=105 Identities=22% Similarity=0.322 Sum_probs=75.6
Q ss_pred cceeeeeccccccHH----HHHHHHHHhhh---------------cCCCe-EEEEeccceeEeecccccCCCCCChhHHh
Q 012326 290 PGVLFIDEVHMLDVE----CFSFLNRALEN---------------EMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLD 349 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~----~~~~L~~~le~---------------~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~lls 349 (466)
..|++|||||+|+.. -.++|+.++.- ..+.+ ||.++|. ...+|.+|++
T Consensus 418 NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANs------------l~tIP~PLlD 485 (782)
T COG0466 418 NPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANS------------LDTIPAPLLD 485 (782)
T ss_pred CCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCc------------cccCChHHhc
Confidence 679999999999663 36677777642 12345 4455554 5689999999
Q ss_pred hhhhhccCCCCHHHHHHHHHHHHhhc----------CCccCHHHHHHHHHhc-CCCCHHHHHHHHHHH
Q 012326 350 RLLIISTKPYTRDEIRKILDIRCQEE----------DVEMAEDAKQLLTRVG-EGTSLRYAIHLITAA 406 (466)
Q Consensus 350 R~~~i~~~pl~~~el~~iL~~~~~~~----------~~~i~~~~l~~l~~~a-~~g~~R~ai~lL~~a 406 (466)
|+.+|++..|+.+|-.+|.+.++-.. .+.|+++++..|.+.. .+-+.|.+-.-+...
T Consensus 486 RMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki 553 (782)
T COG0466 486 RMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKI 553 (782)
T ss_pred ceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHH
Confidence 99999999999999999987764321 4689999999988764 234556554444443
No 164
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.51 E-value=1.2e-12 Score=127.87 Aligned_cols=126 Identities=21% Similarity=0.181 Sum_probs=91.2
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC----------------CCe-EEEEeccceeEeecccccCCCCCChhHHhhhh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM----------------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLL 352 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~----------------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~ 352 (466)
.++++|||+++++++.++.|+.++++.. .++ +|+++|.... .....++++|++||.
T Consensus 106 g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~-------~g~~~l~~aL~~R~~ 178 (262)
T TIGR02640 106 GFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEY-------AGVHETQDALLDRLI 178 (262)
T ss_pred CCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccc-------cceecccHHHHhhcE
Confidence 4599999999999999999999997531 133 5566653110 111356899999999
Q ss_pred hhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHHHhhhcCCccCHHHH
Q 012326 353 IISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGE---------GTSLRYAIHLITAAALASQKRKGKVVEVQDI 423 (466)
Q Consensus 353 ~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~---------~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v 423 (466)
.+.+..|+.++..+|+..++ .++++.++.++++.. .-+.|.++.+.+.+... .....++++++
T Consensus 179 ~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~---~~~~~~~~~~~ 250 (262)
T TIGR02640 179 TIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQ---DIPVDVDDEDF 250 (262)
T ss_pred EEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHc---CCCCCCCcHHH
Confidence 99999999999999999864 367777777777641 12467777766665433 46788999999
Q ss_pred HHHHHHH
Q 012326 424 DRVYRLF 430 (466)
Q Consensus 424 ~~~~~~~ 430 (466)
+.+..-.
T Consensus 251 ~~~~~~~ 257 (262)
T TIGR02640 251 VDLCIDI 257 (262)
T ss_pred HHHHHHH
Confidence 8876533
No 165
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.1e-12 Score=130.03 Aligned_cols=119 Identities=22% Similarity=0.292 Sum_probs=79.1
Q ss_pred cccccCCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHH---cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 21 HSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIK---EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~---~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
.+.|+| .-...-+++..+++||-+...++.+..+..... ...-|.+|+|||||||||||.+|+-+|+.-| ..+.
T Consensus 337 k~~i~~-~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SG--lDYA 413 (630)
T KOG0742|consen 337 KHPIQG-SRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSG--LDYA 413 (630)
T ss_pred hchhhh-hHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcC--Ccee
Confidence 455665 222334555656999999999999887765432 3455679999999999999999999999998 4467
Q ss_pred eeeccceecccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeecc
Q 012326 98 MISGSEIFSLEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQID 144 (466)
Q Consensus 98 ~i~~~~~~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~ 144 (466)
.+.+.++--+.......++++|.=+..-+ ..-++|+||.|++.+.
T Consensus 414 ~mTGGDVAPlG~qaVTkiH~lFDWakkS~--rGLllFIDEADAFLce 458 (630)
T KOG0742|consen 414 IMTGGDVAPLGAQAVTKIHKLFDWAKKSR--RGLLLFIDEADAFLCE 458 (630)
T ss_pred hhcCCCccccchHHHHHHHHHHHHHhhcc--cceEEEehhhHHHHHH
Confidence 77887776655444445666664332211 2344455555554333
No 166
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.50 E-value=2.1e-12 Score=131.41 Aligned_cols=129 Identities=19% Similarity=0.317 Sum_probs=101.3
Q ss_pred cceeeeeccccccH------HHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCC---CChhHHhhh---hhhccC
Q 012326 290 PGVLFIDEVHMLDV------ECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHG---IPMDLLDRL---LIISTK 357 (466)
Q Consensus 290 ~~vl~iDEi~~l~~------~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~---l~~~llsR~---~~i~~~ 357 (466)
-.+++||+++.+.. +.|..++.+.+... -+++++.+ .|.. +.+.|.||+ .++.+.
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--qIvltsdr-----------~P~~l~~~~~rL~SR~~~Gl~~~I~ 242 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK--QIVLTSDR-----------PPKELNGLEDRLRSRLEWGLVVEIE 242 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC--EEEEEcCC-----------CchhhccccHHHHHHHhceeEEeeC
Confidence 35999999999743 33444555544433 56666665 3544 448899999 788899
Q ss_pred CCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhH
Q 012326 358 PYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDV 433 (466)
Q Consensus 358 pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~ 433 (466)
||+.+....||...++..++.++++++.+++... ..|+|.+...|.....++...++ .||.+.+++++..+...
T Consensus 243 ~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~-~~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 243 PPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRL-DRNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999987 59999999999998888865554 88888888887755443
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.49 E-value=7.5e-13 Score=148.91 Aligned_cols=118 Identities=20% Similarity=0.332 Sum_probs=88.9
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC------------CCeEEEEeccceeEeecc----c-------c--cCCCCCC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM------------APILVVATNRGITRIRGT----N-------Y--KSAHGIP 344 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~------------~~iiil~tn~~~~~~~~~----~-------~--~~~~~l~ 344 (466)
+.|+++||++.++++.++.|++++++.. ..+||++||.+...+... + . .--..+.
T Consensus 668 ~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 747 (852)
T TIGR03346 668 YSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFR 747 (852)
T ss_pred CcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcC
Confidence 5699999999999999999999997642 245888888754321110 0 0 0024567
Q ss_pred hhHHhhh-hhhccCCCCHHHHHHHHHHHHhh-------c--CCccCHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Q 012326 345 MDLLDRL-LIISTKPYTRDEIRKILDIRCQE-------E--DVEMAEDAKQLLTRVGE--GTSLRYAIHLITAAA 407 (466)
Q Consensus 345 ~~llsR~-~~i~~~pl~~~el~~iL~~~~~~-------~--~~~i~~~~l~~l~~~a~--~g~~R~ai~lL~~a~ 407 (466)
|+|+.|+ .++.|.|++.+++.+|+...... . .+.++++++++|++... .+++|.+-++++...
T Consensus 748 pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 748 PEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 8999999 78889999999999998765542 1 25799999999999853 588999888887754
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.49 E-value=2.9e-13 Score=152.21 Aligned_cols=111 Identities=24% Similarity=0.204 Sum_probs=81.0
Q ss_pred cceeeeeccccccH--------HHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCC----CCCChhHHhhhhhhccC
Q 012326 290 PGVLFIDEVHMLDV--------ECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSA----HGIPMDLLDRLLIISTK 357 (466)
Q Consensus 290 ~~vl~iDEi~~l~~--------~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~----~~l~~~llsR~~~i~~~ 357 (466)
+.||||||+|.+.. +..+.|. |.+ ++|...++|+++.++ ..+.+++.+||..+.+.
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk--------~~l----~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~ 334 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLK--------PAL----ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVD 334 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhc--------hhh----hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeC
Confidence 57999999999852 1222222 222 445555555555444 34688999999989999
Q ss_pred CCCHHHHHHHHHHHHhhc----CCccCHHHHHHHHHhcCC--CC---HHHHHHHHHHHHHHHhh
Q 012326 358 PYTRDEIRKILDIRCQEE----DVEMAEDAKQLLTRVGEG--TS---LRYAIHLITAAALASQK 412 (466)
Q Consensus 358 pl~~~el~~iL~~~~~~~----~~~i~~~~l~~l~~~a~~--g~---~R~ai~lL~~a~~~a~~ 412 (466)
+|+.++...||....... ++.++++++..++.++.+ .+ +.+|+.+|+.|+.....
T Consensus 335 ~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 335 EPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred CCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHh
Confidence 999999999998776553 567899999999998832 33 77999999999876643
No 169
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2e-13 Score=131.64 Aligned_cols=102 Identities=24% Similarity=0.361 Sum_probs=78.8
Q ss_pred CCcCCcHHHHHHHHHHHHH----HHcC-C-----CCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccC
Q 012326 40 EGMVGQLPARKAAGVILQM----IKEG-K-----IAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM 109 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~----l~~~-~-----~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~ 109 (466)
+.|+||+.+|+.++.++-. ++.. . ....|+||.||+|+|||.||+.+|+.++ +||..-.+..+....+
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln--VPFaiADATtLTEAGY 138 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN--VPFAIADATTLTEAGY 138 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC--CCeeeccccchhhccc
Confidence 5689999999977665522 3221 1 2358999999999999999999999998 9999999998888855
Q ss_pred CHHH---HHHHHHHHHH-cccccCceEEEEcceeeeec
Q 012326 110 SKTE---ALMQAFRKAI-GVRIKEEAEVIEGEVVEVQI 143 (466)
Q Consensus 110 ~~~~---~l~~~~~~a~-~~~~~~~~ii~~dEid~~~~ 143 (466)
-.+. ++.+++..+- .+...+..|||+||||.++.
T Consensus 139 VGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 139 VGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred cchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 4443 6777775433 34555899999999999863
No 170
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=2.7e-12 Score=141.35 Aligned_cols=129 Identities=22% Similarity=0.276 Sum_probs=89.1
Q ss_pred cceeeeecccccc---------HHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCC----CCCChhHHhhhhhhcc
Q 012326 290 PGVLFIDEVHMLD---------VECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSA----HGIPMDLLDRLLIIST 356 (466)
Q Consensus 290 ~~vl~iDEi~~l~---------~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~----~~l~~~llsR~~~i~~ 356 (466)
++||||||+|.+. .+..+.|...+.. +...++|+++.+. ....++|.+||..+.+
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~------------g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v 346 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS------------GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDI 346 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC------------CCeEEEecCChHHHHHHhhccHHHHhhCcEEEe
Confidence 5799999999872 1223334334332 2223333322222 3467899999999999
Q ss_pred CCCCHHHHHHHHHHHHhhc----CCccCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHhh----hcCCccCHHHH
Q 012326 357 KPYTRDEIRKILDIRCQEE----DVEMAEDAKQLLTRVGEG-----TSLRYAIHLITAAALASQK----RKGKVVEVQDI 423 (466)
Q Consensus 357 ~pl~~~el~~iL~~~~~~~----~~~i~~~~l~~l~~~a~~-----g~~R~ai~lL~~a~~~a~~----~~~~~It~~~v 423 (466)
.+|+.++...||+...... ++.++++++..++.++.. .-+.+|+.+|+.|+..... .....|+.++|
T Consensus 347 ~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i 426 (758)
T PRK11034 347 TEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADI 426 (758)
T ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhH
Confidence 9999999999999766543 678999999999988732 3345999999998754432 23456888999
Q ss_pred HHHHHHH
Q 012326 424 DRVYRLF 430 (466)
Q Consensus 424 ~~~~~~~ 430 (466)
..++...
T Consensus 427 ~~v~~~~ 433 (758)
T PRK11034 427 ESVVARI 433 (758)
T ss_pred HHHHHHH
Confidence 8887643
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.45 E-value=1.1e-12 Score=147.11 Aligned_cols=110 Identities=22% Similarity=0.183 Sum_probs=79.2
Q ss_pred cceeeeeccccccHH--------HHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCC----CCChhHHhhhhhhccC
Q 012326 290 PGVLFIDEVHMLDVE--------CFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAH----GIPMDLLDRLLIISTK 357 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~--------~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~----~l~~~llsR~~~i~~~ 357 (466)
+.||||||+|.+... ..+.| .|.+ .+|...++|+++.++. .+.++|.+||..+.+.
T Consensus 272 ~~ILfIDEih~l~~~~~~~~~~d~~~~l--------kp~l----~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~ 339 (857)
T PRK10865 272 NVILFIDELHTMVGAGKADGAMDAGNML--------KPAL----ARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVA 339 (857)
T ss_pred CeEEEEecHHHhccCCCCccchhHHHHh--------cchh----hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeC
Confidence 579999999999532 22223 2333 4566666777666653 4688999999888888
Q ss_pred CCCHHHHHHHHHHHHhhc----CCccCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHh
Q 012326 358 PYTRDEIRKILDIRCQEE----DVEMAEDAKQLLTRVGE-----GTSLRYAIHLITAAALASQ 411 (466)
Q Consensus 358 pl~~~el~~iL~~~~~~~----~~~i~~~~l~~l~~~a~-----~g~~R~ai~lL~~a~~~a~ 411 (466)
.|+.++...+|....... ++.++++++...+.++. ..=+.+|+.+++.++....
T Consensus 340 eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~r 402 (857)
T PRK10865 340 EPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIR 402 (857)
T ss_pred CCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcccc
Confidence 899999999998766543 56889999998877763 1334589999998875554
No 172
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.44 E-value=1.1e-11 Score=125.30 Aligned_cols=140 Identities=23% Similarity=0.278 Sum_probs=99.6
Q ss_pred ceeeeeccccccHHHHHHHHHHhhhc-------C-----CCeEEEEeccceeEeecccccCCCCCChhHHhhh-hhhccC
Q 012326 291 GVLFIDEVHMLDVECFSFLNRALENE-------M-----APILVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIISTK 357 (466)
Q Consensus 291 ~vl~iDEi~~l~~~~~~~L~~~le~~-------~-----~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~~~ 357 (466)
+++++|||++.+++.+++|+.++++. . .|+++++|.+. ......+.+|+++++|| +.+.+.
T Consensus 114 ~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np------~e~~g~~~l~eA~ldRf~~~~~v~ 187 (329)
T COG0714 114 VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNP------GEYEGTYPLPEALLDRFLLRIYVD 187 (329)
T ss_pred eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCc------cccCCCcCCCHHHHhhEEEEEecC
Confidence 39999999999999999999999871 1 34455555320 01122467899999999 777788
Q ss_pred CCCHHHHHHHHHHHHhh------c--------------------CCccCHHHHHHHHHhcC---C--C-----CHHHHHH
Q 012326 358 PYTRDEIRKILDIRCQE------E--------------------DVEMAEDAKQLLTRVGE---G--T-----SLRYAIH 401 (466)
Q Consensus 358 pl~~~el~~iL~~~~~~------~--------------------~~~i~~~~l~~l~~~a~---~--g-----~~R~ai~ 401 (466)
.+..++...++...... . ++.+++++.+++..... . + +.|....
T Consensus 188 yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~ 267 (329)
T COG0714 188 YPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPRASLA 267 (329)
T ss_pred CCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCchHHHHHHHHHHHHhhccccchhccCCchhHHH
Confidence 77444433333222221 0 46788888888776641 1 2 4788888
Q ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHHH
Q 012326 402 LITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRS 436 (466)
Q Consensus 402 lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~~ 436 (466)
++..+...+...+...+..++++......+.....
T Consensus 268 ~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~~~~ 302 (329)
T COG0714 268 LLAALRALALLDGRDAVIPDDVKALAEPALAHRLI 302 (329)
T ss_pred HHHHHHhhhhhcCccccCHHHHHHHhhhhhhhhhh
Confidence 88888888888999999999999998877776653
No 173
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.43 E-value=4.7e-12 Score=142.13 Aligned_cols=117 Identities=21% Similarity=0.365 Sum_probs=85.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------C-CeEEEEeccceeEee---cc-c---------ccCCCCCC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------A-PILVVATNRGITRIR---GT-N---------YKSAHGIP 344 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~-~iiil~tn~~~~~~~---~~-~---------~~~~~~l~ 344 (466)
++|++|||++.+++..++.|++++++.. . .+||++||.+...+. +. . ..--..+.
T Consensus 671 ~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 750 (857)
T PRK10865 671 YSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFR 750 (857)
T ss_pred CCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHccccc
Confidence 5799999999999999999999998641 2 347888887532111 00 0 00124577
Q ss_pred hhHHhhh-hhhccCCCCHHHHHHHHHHHHhhc-------C--CccCHHHHHHHHHhcCC--CCHHHHHHHHHHH
Q 012326 345 MDLLDRL-LIISTKPYTRDEIRKILDIRCQEE-------D--VEMAEDAKQLLTRVGEG--TSLRYAIHLITAA 406 (466)
Q Consensus 345 ~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~-------~--~~i~~~~l~~l~~~a~~--g~~R~ai~lL~~a 406 (466)
|+|++|+ .++.|.|++.+++..|+...+... + +.++++++++|++.+.. -++|.+-+.++..
T Consensus 751 PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 751 PEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHH
Confidence 8999999 889999999999999987666542 3 57899999999987632 3677777777654
No 174
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=3.6e-12 Score=127.94 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCC
Q 012326 266 RAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIP 344 (466)
Q Consensus 266 ~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~ 344 (466)
.+++|+....+ ......+. ++|+++|+++.|+.+.++.|++++|++...+ ||++|++ +..++
T Consensus 95 id~iR~l~~~~-~~~p~~~~----~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~------------~~~ll 157 (325)
T PRK08699 95 IDAVREIIDNV-YLTSVRGG----LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHA------------ADKVL 157 (325)
T ss_pred HHHHHHHHHHH-hhCcccCC----ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCC------------hHhCh
Confidence 46666644333 22222333 6799999999999999999999999986544 8888876 78999
Q ss_pred hhHHhhhhhhccCCCCHHHHHHHHHH
Q 012326 345 MDLLDRLLIISTKPYTRDEIRKILDI 370 (466)
Q Consensus 345 ~~llsR~~~i~~~pl~~~el~~iL~~ 370 (466)
+++.|||..+.|.|++.+++...|..
T Consensus 158 ~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 158 PTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 99999999999999999999999975
No 175
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=1.2e-11 Score=122.50 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=81.2
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++||+++.++..+.++|++.+|+|+..+ +|++|+. +..+.++++|||.++.|.|++.+++.++|
T Consensus 91 ~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~------------~~kll~TI~SRc~~~~f~~l~~~~l~~~l 158 (299)
T PRK07132 91 KKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKN------------INKVLPTIVSRCQVFNVKEPDQQKILAKL 158 (299)
T ss_pred ceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCC------------hHhChHHHHhCeEEEECCCCCHHHHHHHH
Confidence 6799999999999999999999999998876 7777865 78999999999999999999999999998
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLI 403 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL 403 (466)
... .++++....++..+ |++..|+.++
T Consensus 159 ~~~------~~~~~~a~~~a~~~--~~~~~a~~~~ 185 (299)
T PRK07132 159 LSK------NKEKEYNWFYAYIF--SNFEQAEKYI 185 (299)
T ss_pred HHc------CCChhHHHHHHHHc--CCHHHHHHHH
Confidence 863 27777777888777 4688777765
No 176
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.41 E-value=1.1e-11 Score=139.17 Aligned_cols=112 Identities=20% Similarity=0.160 Sum_probs=76.2
Q ss_pred cceeeeeccccccH--------HHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCC----CCCChhHHhhhhhhccC
Q 012326 290 PGVLFIDEVHMLDV--------ECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSA----HGIPMDLLDRLLIISTK 357 (466)
Q Consensus 290 ~~vl~iDEi~~l~~--------~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~----~~l~~~llsR~~~i~~~ 357 (466)
+.||||||+|.+.. ...+.|...+.. |.+.++|+++.++ ....+.|.+||..+.+.
T Consensus 272 ~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r------------g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ 339 (821)
T CHL00095 272 NIILVIDEVHTLIGAGAAEGAIDAANILKPALAR------------GELQCIGATTLDEYRKHIEKDPALERRFQPVYVG 339 (821)
T ss_pred CeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC------------CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecC
Confidence 46999999998743 123333333332 2233333332222 23467899999989999
Q ss_pred CCCHHHHHHHHHHHHhh----cCCccCHHHHHHHHHhcCC--CC---HHHHHHHHHHHHHHHhhh
Q 012326 358 PYTRDEIRKILDIRCQE----EDVEMAEDAKQLLTRVGEG--TS---LRYAIHLITAAALASQKR 413 (466)
Q Consensus 358 pl~~~el~~iL~~~~~~----~~~~i~~~~l~~l~~~a~~--g~---~R~ai~lL~~a~~~a~~~ 413 (466)
+++.++...++...... .++.++++++..++.++.+ ++ +++|+.+|+.|+...+..
T Consensus 340 ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~ 404 (821)
T CHL00095 340 EPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLI 404 (821)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhh
Confidence 99999998888765432 2567999999999999832 33 789999999998766443
No 177
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.40 E-value=1.7e-11 Score=132.38 Aligned_cols=138 Identities=23% Similarity=0.269 Sum_probs=101.3
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------------CCeEEEEeccceeEeecccccCCCCCChhHHhhh-hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------------APILVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------------~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~ 355 (466)
.++|||||+++++++.++.|+.++++.. .++.+++|.+.. .....++++|++|+ +.+.
T Consensus 85 ~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~--------e~~g~L~~~LldRf~l~v~ 156 (589)
T TIGR02031 85 RGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPA--------EGGGGLPDHLLDRLALHVS 156 (589)
T ss_pred CCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCc--------cccCCCCHHHHHhccCeee
Confidence 4799999999999999999999997643 234333333211 01147899999999 3344
Q ss_pred cC-CCCHHHHHHHHHHHH-----------------------hhcCCccCHHHHHHHHHhcCC---CCHHHHHHHHHHHHH
Q 012326 356 TK-PYTRDEIRKILDIRC-----------------------QEEDVEMAEDAKQLLTRVGEG---TSLRYAIHLITAAAL 408 (466)
Q Consensus 356 ~~-pl~~~el~~iL~~~~-----------------------~~~~~~i~~~~l~~l~~~a~~---g~~R~ai~lL~~a~~ 408 (466)
+. +.+.++-.+++.... ....+.++++++++++..+.. .++|..+.+++.|.+
T Consensus 157 ~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA 236 (589)
T TIGR02031 157 LEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKA 236 (589)
T ss_pred cCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 33 344444444443321 112578999999999887622 458999999999999
Q ss_pred HHhhhcCCccCHHHHHHHHHHHHhHHH
Q 012326 409 ASQKRKGKVVEVQDIDRVYRLFLDVQR 435 (466)
Q Consensus 409 ~a~~~~~~~It~~~v~~~~~~~~~~~~ 435 (466)
+|..+|+..|+.+||+.++.+.+.++.
T Consensus 237 ~Aal~gr~~V~~~Dv~~a~~lvl~hR~ 263 (589)
T TIGR02031 237 HAALHGRTEVTEEDLKLAVELVLLPRA 263 (589)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhhhhc
Confidence 999999999999999999999988875
No 178
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=8.8e-12 Score=131.19 Aligned_cols=103 Identities=26% Similarity=0.313 Sum_probs=70.6
Q ss_pred cceeeeeccccccH----HHHHHHHHHhh-------------hcC--CCe-EEEEeccceeEeecccccCCCCCChhHHh
Q 012326 290 PGVLFIDEVHMLDV----ECFSFLNRALE-------------NEM--API-LVVATNRGITRIRGTNYKSAHGIPMDLLD 349 (466)
Q Consensus 290 ~~vl~iDEi~~l~~----~~~~~L~~~le-------------~~~--~~i-iil~tn~~~~~~~~~~~~~~~~l~~~lls 349 (466)
..+++|||||++.. +-.++|+.++. -+. +.+ ||.++|. ...+|++|++
T Consensus 506 NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~------------idtIP~pLlD 573 (906)
T KOG2004|consen 506 NPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANV------------IDTIPPPLLD 573 (906)
T ss_pred CceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccc------------cccCChhhhh
Confidence 56899999999853 22455555553 221 234 5555554 5799999999
Q ss_pred hhhhhccCCCCHHHHHHHHHHHHhh----------cCCccCHHHHHHHHHhc-CCCCHHHHHHHHH
Q 012326 350 RLLIISTKPYTRDEIRKILDIRCQE----------EDVEMAEDAKQLLTRVG-EGTSLRYAIHLIT 404 (466)
Q Consensus 350 R~~~i~~~pl~~~el~~iL~~~~~~----------~~~~i~~~~l~~l~~~a-~~g~~R~ai~lL~ 404 (466)
|+.+|.+..|..+|-..|...++-. +.+.++++++..|.+.. .+-+.|.+-.-++
T Consensus 574 RMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~ie 639 (906)
T KOG2004|consen 574 RMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIE 639 (906)
T ss_pred hhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999998887665432 25789999988877653 3345555444443
No 179
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.37 E-value=5e-12 Score=109.41 Aligned_cols=125 Identities=24% Similarity=0.367 Sum_probs=93.2
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCC
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPA 147 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~ 147 (466)
+||+||||||||++|+.+|+.++ .|+..+++..+.+....+.+ .+...+..+.... +|+++++||+|.+......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~vl~iDe~d~l~~~~~~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA--KPCVLFIDEIDKLFPKSQP 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS--TSEEEEEETGGGTSHHCST
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--cccccccccccccccccccccccccccccccccc--cceeeeeccchhccccccc
Confidence 68999999999999999999998 88999999999977777777 7888888765433 5899999999999877622
Q ss_pred CCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCCCeEEEEccCCCcccccccccccccccc
Q 012326 148 TSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDA 214 (466)
Q Consensus 148 ~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~ 214 (466)
... .........++..+.+..-. +.-+.+..++|.++.+++.+.+ +||+.
T Consensus 77 ~~~---------------~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~ 126 (132)
T PF00004_consen 77 SSS---------------SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDR 126 (132)
T ss_dssp SSS---------------HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEE
T ss_pred ccc---------------cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcE
Confidence 211 11222333444444222221 2346777788889999999998 88887
No 180
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.36 E-value=6.1e-11 Score=126.38 Aligned_cols=143 Identities=21% Similarity=0.268 Sum_probs=97.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------------CCe-EEEEeccceeEeecc-cccCCCCCChhHHhhh-hh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------------API-LVVATNRGITRIRGT-NYKSAHGIPMDLLDRL-LI 353 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------------~~i-iil~tn~~~~~~~~~-~~~~~~~l~~~llsR~-~~ 353 (466)
.|+++|||++.+++..+..|+.+|+... .++ +|.++|--.-.+... ....-..+|++++||| ++
T Consensus 301 ~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi 380 (509)
T smart00350 301 NGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLL 380 (509)
T ss_pred CCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeE
Confidence 5799999999999999999999997632 123 444444210000000 0000127899999999 43
Q ss_pred hc-cCCCCHHHHHHHHHHHH------------------------------hh-cCCccCHHHHHHHHHhcC---------
Q 012326 354 IS-TKPYTRDEIRKILDIRC------------------------------QE-EDVEMAEDAKQLLTRVGE--------- 392 (466)
Q Consensus 354 i~-~~pl~~~el~~iL~~~~------------------------------~~-~~~~i~~~~l~~l~~~a~--------- 392 (466)
+. ..+++.+.-.+++.+.. +. ....+++++.++|.++..
T Consensus 381 ~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~ 460 (509)
T smart00350 381 FVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQS 460 (509)
T ss_pred EEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccccc
Confidence 33 45566555445544422 11 123689999999887641
Q ss_pred ------CCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHh
Q 012326 393 ------GTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLD 432 (466)
Q Consensus 393 ------~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~ 432 (466)
.-++|....+++.|.++|..+++..|+.+||+.|+.++..
T Consensus 461 ~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 461 EARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRE 506 (509)
T ss_pred ccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHH
Confidence 1268999999999999999999999999999999998854
No 181
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.2e-10 Score=120.73 Aligned_cols=191 Identities=14% Similarity=0.223 Sum_probs=130.3
Q ss_pred CCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCC--CceEeeeccceecccCCHHH-HHH
Q 012326 40 EGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLE--TPFAMISGSEIFSLEMSKTE-ALM 116 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~--~p~~~i~~~~~~~~e~~~~~-~l~ 116 (466)
.|++-....|+.... ......+...++||+||+|+|||.|++++++++..+ ..+..++|+..-.....+.+ .++
T Consensus 408 ~d~i~~~s~kke~~n---~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~ 484 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLN 484 (952)
T ss_pred Cceeecchhhhhhhh---hhcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHH
Confidence 566766767665422 333334446899999999999999999999998864 33444555544332222222 355
Q ss_pred HHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCCCeEEEEccC
Q 012326 117 QAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVS 196 (466)
Q Consensus 117 ~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~i~~~t 196 (466)
..|..+.. ++|++|+.|.+|++....+..+ ..+...+..-..++++.+.+-.+-+-.|.+.++.
T Consensus 485 ~vfse~~~---~~PSiIvLDdld~l~~~s~~e~-------------~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~ 548 (952)
T KOG0735|consen 485 NVFSEALW---YAPSIIVLDDLDCLASASSNEN-------------GQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATG 548 (952)
T ss_pred HHHHHHHh---hCCcEEEEcchhhhhccCcccC-------------CcchHHHHHHHHHHHHHHHHHHccCcEEEEEEec
Confidence 55555554 4699999999999987222211 2334445555666777777777778888999888
Q ss_pred CCcccccccccccccccccCCceeeecCCChhHHhHHHhhhh--------cchhhHHHHhhhccccc
Q 012326 197 GKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHC--------VTLHEIDVINSRTQGFL 255 (466)
Q Consensus 197 ~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~--------~~l~~ld~~~~~~~~~~ 255 (466)
+...-+.+-+..+..|+. -+.+|..+...|+++++. ++..+++.++.+|.||.
T Consensus 549 qe~qtl~~~L~s~~~Fq~------~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~ 609 (952)
T KOG0735|consen 549 QELQTLNPLLVSPLLFQI------VIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYL 609 (952)
T ss_pred hhhhhcChhhcCccceEE------EEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCcc
Confidence 888888888888886666 556677778888888743 35567788888888844
No 182
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.36 E-value=4.8e-11 Score=129.19 Aligned_cols=132 Identities=23% Similarity=0.310 Sum_probs=93.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------------------CCe---EEEEeccceeEeecccccCCCCCChhH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------------------API---LVVATNRGITRIRGTNYKSAHGIPMDL 347 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------------------~~i---iil~tn~~~~~~~~~~~~~~~~l~~~l 347 (466)
.|+|||||++.|+++.+..|.+++++.. .|+ +|.++|. .....+.++|
T Consensus 218 gGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~----------~~l~~l~~~l 287 (608)
T TIGR00764 218 KGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNL----------DDLEGMHPAL 287 (608)
T ss_pred CCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCH----------HHHhhcCHHH
Confidence 6899999999999999999999987532 122 4444442 1124788999
Q ss_pred Hhhhh----hhccC---CCCHHHHH---HHHHHHHhhcC--CccCHHHHHHHHHhcC---------CCCHHHHHHHHHHH
Q 012326 348 LDRLL----IISTK---PYTRDEIR---KILDIRCQEED--VEMAEDAKQLLTRVGE---------GTSLRYAIHLITAA 406 (466)
Q Consensus 348 lsR~~----~i~~~---pl~~~el~---~iL~~~~~~~~--~~i~~~~l~~l~~~a~---------~g~~R~ai~lL~~a 406 (466)
++|+- .+.|. |.+.+... ..+...+++.+ ..+++++++.+.+.+. ..+.|..-++++.|
T Consensus 288 ~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 288 RSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred HHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 99985 12333 34555544 44444444442 3799999999986541 14589999999999
Q ss_pred HHHHhhhcCCccCHHHHHHHHHHHH
Q 012326 407 ALASQKRKGKVVEVQDIDRVYRLFL 431 (466)
Q Consensus 407 ~~~a~~~~~~~It~~~v~~~~~~~~ 431 (466)
...|..++...|+.+||++|+....
T Consensus 368 ~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 368 GDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHHHhcCCceecHHHHHHHHHHHH
Confidence 8888778889999999999987653
No 183
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.35 E-value=1.3e-11 Score=126.74 Aligned_cols=113 Identities=19% Similarity=0.307 Sum_probs=79.2
Q ss_pred cceeeeeccccc----cHHHHHH-HHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhh--hhhccCCCCHH
Q 012326 290 PGVLFIDEVHML----DVECFSF-LNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIISTKPYTRD 362 (466)
Q Consensus 290 ~~vl~iDEi~~l----~~~~~~~-L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~~~pl~~~ 362 (466)
+++++|||.-.. ..+.|.. |......+..|+|+++|+.. ..|.+ .+....+.++..++ ..|.|+|....
T Consensus 195 ~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~---~~g~n-nq~rlf~~d~q~~~ri~~IsFNPIa~T 270 (634)
T KOG1970|consen 195 KKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSL---SNGNN-NQDRLFPKDIQEEPRISNISFNPIAPT 270 (634)
T ss_pred ceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccc---cCCCc-chhhhchhhhhhccCcceEeecCCcHH
Confidence 568999987654 2233433 44444556678888888641 11221 11134455555554 78999999999
Q ss_pred HHHHHHHHHHhhcCCccC------HHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012326 363 EIRKILDIRCQEEDVEMA------EDAKQLLTRVGEGTSLRYAIHLITAAA 407 (466)
Q Consensus 363 el~~iL~~~~~~~~~~i~------~~~l~~l~~~a~~g~~R~ai~lL~~a~ 407 (466)
-|++.|+.+|..++...+ ...++.++..+ +||+|.||+.||...
T Consensus 271 ~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s-~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 271 IMKKFLKRICRIEANKKSGIKVPDTAEVELICQGS-GGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhc-CccHHHHHhHhhhhc
Confidence 999999999999977666 56788888877 599999999999873
No 184
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.33 E-value=4.3e-11 Score=120.58 Aligned_cols=135 Identities=26% Similarity=0.332 Sum_probs=99.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCC--CCCChhHHhhh-hhh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSA--HGIPMDLLDRL-LII 354 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~--~~l~~~llsR~-~~i 354 (466)
.||+++||++.|+++.++.|+.++++.. .|. |+++.. .|| +.|-+.|++|| ..+
T Consensus 145 RGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligT-----------mNPEeGeLrpqLlDRfg~~v 213 (423)
T COG1239 145 RGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGT-----------MNPEEGELRPQLLDRFGLEV 213 (423)
T ss_pred CCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEee-----------cCccccccchhhHhhhccee
Confidence 7899999999999999999999998731 122 222221 125 78999999998 555
Q ss_pred ccCC-CCHHHHHHHHHHHHhhc-----------------------------CCccCHHHHHHHHHhcCC---CCHHHHHH
Q 012326 355 STKP-YTRDEIRKILDIRCQEE-----------------------------DVEMAEDAKQLLTRVGEG---TSLRYAIH 401 (466)
Q Consensus 355 ~~~p-l~~~el~~iL~~~~~~~-----------------------------~~~i~~~~l~~l~~~a~~---g~~R~ai~ 401 (466)
...+ .+.++-..|+.+....+ .+.+++++..+++..+.. .+.|..+.
T Consensus 214 ~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~ 293 (423)
T COG1239 214 DTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIV 293 (423)
T ss_pred eccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhH
Confidence 5544 44444444444333211 467888888887776522 34789999
Q ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHH
Q 012326 402 LITAAALASQKRKGKVVEVQDIDRVYRLFLDVQR 435 (466)
Q Consensus 402 lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~ 435 (466)
+.+.+.++|...|+..++.+|++++..+.+-.+.
T Consensus 294 ~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~hR~ 327 (423)
T COG1239 294 VVRAAKALAALRGRTEVEEEDIREAAELALLHRR 327 (423)
T ss_pred HHHHHHHHHHhcCceeeehhhHHHHHhhhhhhhh
Confidence 9999999999999999999999999998876665
No 185
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.33 E-value=1.3e-11 Score=125.31 Aligned_cols=111 Identities=25% Similarity=0.303 Sum_probs=78.3
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCC-CCCCh--hHHhhh--h
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSA-HGIPM--DLLDRL--L 352 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~-~~l~~--~llsR~--~ 352 (466)
.|+||+||+|.|+++.+..|++++++.. ..+ +|.+|+ .++ ..+.. +|.+|+ .
T Consensus 174 GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~-----------~~l~~~~~~g~dl~~rl~~~ 242 (403)
T COG1221 174 GGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATT-----------EDLEEAVLAGADLTRRLNIL 242 (403)
T ss_pred CCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccc-----------cCHHHHHHhhcchhhhhcCc
Confidence 5799999999999999999999999732 112 334443 333 44455 788877 5
Q ss_pred hhccCCCCHH--HHHHHH----HHHHhhcCC---ccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 012326 353 IISTKPYTRD--EIRKIL----DIRCQEEDV---EMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ 411 (466)
Q Consensus 353 ~i~~~pl~~~--el~~iL----~~~~~~~~~---~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~ 411 (466)
.|+++|+.+- ++...+ +..|.+.+. ..+++++..+....-.||+|...|+++.++..+.
T Consensus 243 ~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 243 TITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 6778887654 222222 334444443 3456889999998777999999999999987774
No 186
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.33 E-value=2.4e-11 Score=128.22 Aligned_cols=140 Identities=18% Similarity=0.233 Sum_probs=92.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------------CCe-EEEEeccceeEeecc-----cccC------CCCCC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------------API-LVVATNRGITRIRGT-----NYKS------AHGIP 344 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------------~~i-iil~tn~~~~~~~~~-----~~~~------~~~l~ 344 (466)
.++|||||++.++...+..|.+.+|+.. ..+ +|.++|....-.-+. .+.. ...+.
T Consensus 296 ~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is 375 (499)
T TIGR00368 296 NGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLS 375 (499)
T ss_pred CCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhcc
Confidence 5799999999999999999999998643 123 555555311000000 0000 12688
Q ss_pred hhHHhhh-hhhccCCCCHHHH------------HHHH-HHHHhh------c-----C-----------CccCHHHHHHHH
Q 012326 345 MDLLDRL-LIISTKPYTRDEI------------RKIL-DIRCQE------E-----D-----------VEMAEDAKQLLT 388 (466)
Q Consensus 345 ~~llsR~-~~i~~~pl~~~el------------~~iL-~~~~~~------~-----~-----------~~i~~~~l~~l~ 388 (466)
.+|++|+ +.+.+.+++.+++ ++.+ +.+... . + +.+++++.+.+.
T Consensus 376 ~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~ 455 (499)
T TIGR00368 376 GPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLE 455 (499)
T ss_pred HhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHH
Confidence 8999999 6777887765544 2222 111111 0 1 234666666555
Q ss_pred HhcC--CCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHH
Q 012326 389 RVGE--GTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRL 429 (466)
Q Consensus 389 ~~a~--~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~ 429 (466)
.... .-+.|....+|+.|..+|..++.+.|+.+||.+|+.+
T Consensus 456 ~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 456 GALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 4431 3588999999999999999999999999999999853
No 187
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.33 E-value=3.8e-11 Score=129.05 Aligned_cols=127 Identities=21% Similarity=0.254 Sum_probs=91.5
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCC-----------Ce-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMA-----------PI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~-----------~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.++|||||++.|+...+..|++.+++... .+ +|++|+..... ......+.++|..|+ ..+.
T Consensus 291 ~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~-----~~~~~~f~~~L~~rl~~~~i~ 365 (534)
T TIGR01817 291 GGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEE-----AVAKGEFRADLYYRINVVPIF 365 (534)
T ss_pred CCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHH-----HHHcCCCCHHHHHHhcCCeee
Confidence 57999999999999999999999976421 13 55555531100 111246678899998 4567
Q ss_pred cCCCC--HHHHHHHHHHHHhhc------CCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHH
Q 012326 356 TKPYT--RDEIRKILDIRCQEE------DVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDID 424 (466)
Q Consensus 356 ~~pl~--~~el~~iL~~~~~~~------~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~ 424 (466)
++|+. .+++..++...+... .+.+++++++.|....-.||+|.+.+.++.+...+ ....|+.+++.
T Consensus 366 lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 366 LPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred CCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 88887 466666665554432 25799999999999876799999999999987555 35678887764
No 188
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=3.9e-11 Score=121.46 Aligned_cols=131 Identities=25% Similarity=0.241 Sum_probs=93.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe----EEEEeccceeEeecccccC-CCCCChhHHhhh----hhhccCCCC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI----LVVATNRGITRIRGTNYKS-AHGIPMDLLDRL----LIISTKPYT 360 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i----iil~tn~~~~~~~~~~~~~-~~~l~~~llsR~----~~i~~~pl~ 360 (466)
.-|+++||+|+|....+..|+.+.+.+..|. +|.++|. .+ ...+.+.|..|+ ..+.|.||+
T Consensus 257 ~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANs----------lDlTdR~LprL~~~~~~~P~~l~F~PYT 326 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANS----------LDLTDRFLPRLNLDLTIKPKLLVFPPYT 326 (529)
T ss_pred eEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhh----------hhHHHHHhhhhhhccCCCCceeeecCCC
Confidence 4588899999998777777777777665553 4445553 10 123344444444 468899999
Q ss_pred HHHHHHHHHHHHhhcCC-ccCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhhhcCC----------------ccCHH
Q 012326 361 RDEIRKILDIRCQEEDV-EMAEDAKQLLTRVG--EGTSLRYAIHLITAAALASQKRKGK----------------VVEVQ 421 (466)
Q Consensus 361 ~~el~~iL~~~~~~~~~-~i~~~~l~~l~~~a--~~g~~R~ai~lL~~a~~~a~~~~~~----------------~It~~ 421 (466)
.+|+.+||+.+...+.. .+-+.+++.+++.. ..||+|.|+..++.|..+++..++. .|-.+
T Consensus 327 k~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~ 406 (529)
T KOG2227|consen 327 KDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVE 406 (529)
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchH
Confidence 99999999999988865 44556889988774 3599999999999999999866543 24456
Q ss_pred HHHHHHHHH
Q 012326 422 DIDRVYRLF 430 (466)
Q Consensus 422 ~v~~~~~~~ 430 (466)
+|-.+++-+
T Consensus 407 ~va~viSk~ 415 (529)
T KOG2227|consen 407 HVAAVISKV 415 (529)
T ss_pred HHHHHhhhh
Confidence 676666533
No 189
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.31 E-value=6.4e-11 Score=119.37 Aligned_cols=116 Identities=22% Similarity=0.272 Sum_probs=84.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.|+|||||++.|+...+..|++.+++.. ..+ +|.+|+.... .......+.++|..|+ ..|.
T Consensus 94 gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~-----~~~~~g~fr~dL~~rl~~~~i~ 168 (329)
T TIGR02974 94 GGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLP-----ALAAEGRFRADLLDRLAFDVIT 168 (329)
T ss_pred CCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHH-----HHhhcCchHHHHHHHhcchhcC
Confidence 5799999999999999999999997643 123 5555543110 0011245668899998 6788
Q ss_pred cCCCC--HHHHHHHHHHHHh----hcC----CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 012326 356 TKPYT--RDEIRKILDIRCQ----EED----VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 356 ~~pl~--~~el~~iL~~~~~----~~~----~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a 410 (466)
++|+. .+++..++...+. ..+ ..+++++++.|....-.||+|.+.+.++.+...+
T Consensus 169 lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 169 LPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 99987 4566665554433 222 4689999999999986799999999999987665
No 190
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4e-11 Score=116.10 Aligned_cols=107 Identities=20% Similarity=0.268 Sum_probs=71.6
Q ss_pred ccCCcCCcHHHHHHHHHHHHH---HH-cCCCC-----CceEEEecCCCCChHHHHHHHHHHcCC-------CCceEeeec
Q 012326 38 VSEGMVGQLPARKAAGVILQM---IK-EGKIA-----GRAVLIAGQPGTGKTAIAMGMAKSLGL-------ETPFAMISG 101 (466)
Q Consensus 38 ~~~~lvG~~~~k~~l~~~l~~---l~-~~~~~-----~~~iLL~GppGtGKT~lA~~ia~~l~~-------~~p~~~i~~ 101 (466)
.|+.++=-.+.|+.+...+.. +. .+..+ ++.+|++||||||||++++++|+.+.- .-..+.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 456666566677765444322 11 12211 589999999999999999999998763 234778999
Q ss_pred cceecccCCHHH-HHHHHHHHHHcccccCceE--EEEcceeeeecc
Q 012326 102 SEIFSLEMSKTE-ALMQAFRKAIGVRIKEEAE--VIEGEVVEVQID 144 (466)
Q Consensus 102 ~~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~i--i~~dEid~~~~~ 144 (466)
..++|+|.+++. .+.++|.+...+---+.+. +++||+.++...
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~a 265 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAA 265 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHH
Confidence 999999999998 7888887655432112222 345666665433
No 191
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.29 E-value=3.2e-11 Score=124.63 Aligned_cols=161 Identities=22% Similarity=0.315 Sum_probs=104.3
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC---------CC--e-EEEEeccceeEeecccccCCCCCChhHHhhhhh--hc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM---------AP--I-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLI--IS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~---------~~--i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~--i~ 355 (466)
.|.+|||||..|+...|..|++++++.. .| + +|-+||+...+.. ....+-.+|--|+.+ ++
T Consensus 341 gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i-----~~G~FReDLYYRLNV~~i~ 415 (560)
T COG3829 341 GGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMI-----AEGTFREDLYYRLNVIPIT 415 (560)
T ss_pred CCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHH-----hcCcchhhheeeeceeeec
Confidence 4799999999999999999999998732 12 2 6777776322221 124556777788844 55
Q ss_pred cCCCCH--HHHHHHHHHHH----hhc--CC-ccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHH-H
Q 012326 356 TKPYTR--DEIRKILDIRC----QEE--DV-EMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDID-R 425 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~~----~~~--~~-~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~-~ 425 (466)
++|+-+ +++........ +.. .+ .++++++..+.++.=.||.|.+-|+++++..+.. ....|+.+|.- .
T Consensus 416 iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp~~ 493 (560)
T COG3829 416 IPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLPAF 493 (560)
T ss_pred CCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcchh
Confidence 666543 33333333333 333 24 4999999999998767999999999999976543 33447766654 2
Q ss_pred HHHHH---------HhHHHHHHHHHHHHHHHHhhhhhccCc
Q 012326 426 VYRLF---------LDVQRSTQYLMEYQSQYINEVTIEADE 457 (466)
Q Consensus 426 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (466)
..... .......+.++++|+.+|.+.-..+..
T Consensus 494 ~l~~k~~~~~~~~~~~~~~l~~~~e~~Ek~~I~~aL~~~~g 534 (560)
T COG3829 494 ALEEKEPRPETTKQIEVGSLKEALEEYEKHLIREALERHGG 534 (560)
T ss_pred hhcccccCcCcccCcccccHHHHHHHHHHHHHHHHHHHhCC
Confidence 22111 111224567888899888766655543
No 192
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.26 E-value=9.9e-10 Score=109.15 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=66.3
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhc-------------C-CCe-EEEEeccceeEeeccc---ccCCCCCChhHHhhh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENE-------------M-API-LVVATNRGITRIRGTN---YKSAHGIPMDLLDRL 351 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~-------------~-~~i-iil~tn~~~~~~~~~~---~~~~~~l~~~llsR~ 351 (466)
+.++++||++...++.++.|+.++|.. . .++ +|.++|. . - .|.. +.....+++++++|+
T Consensus 135 g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np-~-g-~Gd~~G~y~Gt~~l~~A~lDRF 211 (327)
T TIGR01650 135 NVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT-I-G-LGDTTGLYHGTQQINQAQMDRW 211 (327)
T ss_pred CeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC-C-C-cCCCCcceeeeecCCHHHHhhe
Confidence 457999999999999999999998841 1 123 2333332 0 0 0000 222357799999999
Q ss_pred h-hhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhc
Q 012326 352 L-IISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVG 391 (466)
Q Consensus 352 ~-~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a 391 (466)
. ++.+..++.++-.+|+...+....-.-+++.++++++++
T Consensus 212 ~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la 252 (327)
T TIGR01650 212 SIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVA 252 (327)
T ss_pred eeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 5 568999999999999987653221112467788888776
No 193
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=7.3e-11 Score=120.49 Aligned_cols=139 Identities=19% Similarity=0.269 Sum_probs=83.5
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccc-----eeEeeccc---------------------ccCC-CC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRG-----ITRIRGTN---------------------YKSA-HG 342 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~-----~~~~~~~~---------------------~~~~-~~ 342 (466)
.|||||||.-......++.|..-+|+... +|--++.. .+++.++. ..++ ..
T Consensus 284 ~GVLFLDElpef~~~iLe~LR~PLE~g~i--~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~k 361 (490)
T COG0606 284 NGVLFLDELPEFKRSILEALREPLENGKI--IISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNK 361 (490)
T ss_pred CCEEEeeccchhhHHHHHHHhCccccCcE--EEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHH
Confidence 57999999999988888888888876421 11000000 01222111 0111 34
Q ss_pred CChhHHhhh-hhhccCCCCHHH-------------HHHHH-------HHHHhhc--CCccCHHHHHHHHHhcC-------
Q 012326 343 IPMDLLDRL-LIISTKPYTRDE-------------IRKIL-------DIRCQEE--DVEMAEDAKQLLTRVGE------- 392 (466)
Q Consensus 343 l~~~llsR~-~~i~~~pl~~~e-------------l~~iL-------~~~~~~~--~~~i~~~~l~~l~~~a~------- 392 (466)
+..+|++|+ ..+.+..++..+ +++.+ ..+..+. +..++++.++..+.+..
T Consensus 362 lSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~ 441 (490)
T COG0606 362 LSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLK 441 (490)
T ss_pred hhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHH
Confidence 456899998 556666555332 22222 1222222 44556666655444431
Q ss_pred ------CCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 393 ------GTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 393 ------~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
+-+.|..-.+|..+..+|..++.+.|...|+.++++.-
T Consensus 442 ~al~~~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 442 AALERLGLSARAYHRILKVARTIADLEGSEQIERSHLAEAISYR 485 (490)
T ss_pred HHHHhcchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhhh
Confidence 23678888899999999999999999999999888643
No 194
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.4e-09 Score=115.82 Aligned_cols=319 Identities=24% Similarity=0.342 Sum_probs=203.0
Q ss_pred CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHH-HHHHHHHHHHcccccCceEEEEcceee
Q 012326 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVE 140 (466)
Q Consensus 62 ~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~ 140 (466)
+..++++++++||||+|||+++++++.. + .++..+++..+.+.+++..+ .+..++..+.... |++++.|++++
T Consensus 14 ~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~~ii~~d~~~~ 87 (494)
T COG0464 14 GIEPPKGVLLHGPPGTGKTLLARALANE-G--AEFLSINGPEILSKYVGESELRLRELFEEAEKLA---PSIIFIDEIDA 87 (494)
T ss_pred CCCCCCCceeeCCCCCchhHHHHHHHhc-c--CcccccCcchhhhhhhhHHHHHHHHHHHHHHHhC---CCeEeechhhh
Confidence 5566799999999999999999999998 3 34477889999999999988 7888887777654 79999999999
Q ss_pred eeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCCCeEEEEccCCCcccccccccccccccccCCcee
Q 012326 141 VQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTK 220 (466)
Q Consensus 141 ~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~ 220 (466)
+.+.+..... .........+...+..-. .+. +.+...++.+..++++..++++++.. .
T Consensus 88 ~~~~~~~~~~---------------~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~----~ 145 (494)
T COG0464 88 LAPKRSSDQG---------------EVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDRE----I 145 (494)
T ss_pred cccCcccccc---------------chhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCcccccee----e
Confidence 9888765111 111122222333332222 566 66677999999999999999999983 3
Q ss_pred eecCCChhHHhHHHhh----------------------------------------------------------------
Q 012326 221 FVQCPDGELQKRKEVV---------------------------------------------------------------- 236 (466)
Q Consensus 221 ~i~~p~~~~~~r~~~~---------------------------------------------------------------- 236 (466)
.++.|+.... .++.
T Consensus 146 ~~~~~~~~~~--~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l 223 (494)
T COG0464 146 EVNLPDEAGR--LEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEAL 223 (494)
T ss_pred ecCCCCHHHH--HHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHH
Confidence 3333321100 0000
Q ss_pred -------------hhcchhhHH--------------HH----------h-hhcccccccccCC-----------------
Q 012326 237 -------------HCVTLHEID--------------VI----------N-SRTQGFLALFTGD----------------- 261 (466)
Q Consensus 237 -------------~~~~l~~ld--------------~~----------~-~~~~~~~~l~~~~----------------- 261 (466)
..+++.++. .. + ..+.| -++.|.
T Consensus 224 ~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~g--iLl~GpPGtGKT~lAkava~~~~ 301 (494)
T COG0464 224 KKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKG--VLLYGPPGTGKTLLAKAVALESR 301 (494)
T ss_pred HhcCcccccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCe--eEEECCCCCCHHHHHHHHHhhCC
Confidence 001111110 00 0 00000 000000
Q ss_pred -------ccchh----HHHHHHHHHHHHHHHhhcccccccceeeeeccccccH-----------HHHHHHHHHhh--hcC
Q 012326 262 -------TGEIR----AEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDV-----------ECFSFLNRALE--NEM 317 (466)
Q Consensus 262 -------~~ei~----~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~-----------~~~~~L~~~le--~~~ 317 (466)
..++. .+..+.+........ +..++|+|+||+|.+-. ...+.|+..+. +..
T Consensus 302 ~~fi~v~~~~l~sk~vGesek~ir~~F~~A~-----~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 302 SRFISVKGSELLSKWVGESEKNIRELFEKAR-----KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred CeEEEeeCHHHhccccchHHHHHHHHHHHHH-----cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc
Confidence 00100 011111111111111 11278999999999822 34555655553 344
Q ss_pred CCe-EEEEeccceeEeecccccCCCCCChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCc-cCHHHHHHHHHhcC
Q 012326 318 API-LVVATNRGITRIRGTNYKSAHGIPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVE-MAEDAKQLLTRVGE 392 (466)
Q Consensus 318 ~~i-iil~tn~~~~~~~~~~~~~~~~l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~-i~~~~l~~l~~~a~ 392 (466)
..+ +|.+||+ |..+++++++ |+ ..+.+++++.++..+|++..+...... ..+-.++.+++.+.
T Consensus 377 ~~v~vi~aTN~------------p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~ 444 (494)
T COG0464 377 EGVLVIAATNR------------PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITE 444 (494)
T ss_pred CceEEEecCCC------------ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhc
Confidence 555 5677776 8899999999 99 678899999999999999988866654 34455677777664
Q ss_pred CCCHHHHHHHHHHHHHHHhhhc-CCccCHHHHHHHHHH
Q 012326 393 GTSLRYAIHLITAAALASQKRK-GKVVEVQDIDRVYRL 429 (466)
Q Consensus 393 ~g~~R~ai~lL~~a~~~a~~~~-~~~It~~~v~~~~~~ 429 (466)
+-+...+..+++.|...+.... ...||.+|+..+...
T Consensus 445 ~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 445 GYSGADIAALVREAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHh
Confidence 4566778888888887776665 678999999888765
No 195
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7.3e-11 Score=128.03 Aligned_cols=146 Identities=19% Similarity=0.205 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhcccccccceeeeeccccccHHHHH---HHHHHhhhcCCCeEEEEeccceeEeecccccCCC----CC
Q 012326 271 EQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFS---FLNRALENEMAPILVVATNRGITRIRGTNYKSAH----GI 343 (466)
Q Consensus 271 ~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~---~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~----~l 343 (466)
+.+..++....+.+ +.||||||+|.+--..-. ++. ..+...|.+ -+|..+++|+++.+.+ .-
T Consensus 249 eRlk~vl~ev~~~~-----~vILFIDEiHtiVGAG~~~G~a~D--AaNiLKPaL----ARGeL~~IGATT~~EYRk~iEK 317 (786)
T COG0542 249 ERLKAVLKEVEKSK-----NVILFIDEIHTIVGAGATEGGAMD--AANLLKPAL----ARGELRCIGATTLDEYRKYIEK 317 (786)
T ss_pred HHHHHHHHHHhcCC-----CeEEEEechhhhcCCCcccccccc--hhhhhHHHH----hcCCeEEEEeccHHHHHHHhhh
Confidence 34444444444333 359999999998321110 000 001122444 5677777777765553 22
Q ss_pred ChhHHhhhhhhccCCCCHHHHHHHHHHHHhhc----CCccCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHhhhc
Q 012326 344 PMDLLDRLLIISTKPYTRDEIRKILDIRCQEE----DVEMAEDAKQLLTRVGEG-----TSLRYAIHLITAAALASQKRK 414 (466)
Q Consensus 344 ~~~llsR~~~i~~~pl~~~el~~iL~~~~~~~----~~~i~~~~l~~l~~~a~~-----g~~R~ai~lL~~a~~~a~~~~ 414 (466)
.++|-+||+.+.+..|+.++...||....... ++.|+++|+.+.+.++.+ -=+-+||.+++.|++..+...
T Consensus 318 D~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~ 397 (786)
T COG0542 318 DAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEI 397 (786)
T ss_pred chHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999877665 689999999999999831 123479999999986665432
Q ss_pred CCccCHHHHHHHH
Q 012326 415 GKVVEVQDIDRVY 427 (466)
Q Consensus 415 ~~~It~~~v~~~~ 427 (466)
......+.+++-+
T Consensus 398 ~~p~~l~~~~~~~ 410 (786)
T COG0542 398 DKPEELDELEREL 410 (786)
T ss_pred cCCcchhHHHHHH
Confidence 2334444444443
No 196
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.25 E-value=1e-10 Score=125.44 Aligned_cols=138 Identities=25% Similarity=0.256 Sum_probs=107.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------------CCeEEEEeccceeEeecccccCCCCCChhHHhhh-hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------------APILVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------------~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~ 355 (466)
.+||||||++.+++..++.|+..+++.. .+++++++..+. . ..+.+++++++|| +.+.
T Consensus 94 ~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~------~--~~~~L~~~lLDRf~l~v~ 165 (584)
T PRK13406 94 GGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA------E--EDERAPAALADRLAFHLD 165 (584)
T ss_pred CCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh------h--cccCCCHHhHhheEEEEE
Confidence 5799999999999999999999998742 233444432110 0 1157999999999 7788
Q ss_pred cCCCCHHHHH-------HHHHHHHhhcCCccCHHHHHHHHHhcCC-C--CHHHHHHHHHHHHHHHhhhcCCccCHHHHHH
Q 012326 356 TKPYTRDEIR-------KILDIRCQEEDVEMAEDAKQLLTRVGEG-T--SLRYAIHLITAAALASQKRKGKVVEVQDIDR 425 (466)
Q Consensus 356 ~~pl~~~el~-------~iL~~~~~~~~~~i~~~~l~~l~~~a~~-g--~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~ 425 (466)
+.+++..+.. +|+..+..-.++.++++.+++++..+.. | ++|..+.+++.|.++|..+|++.|+.+||..
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~ 245 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLAL 245 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 8877765542 4555544445889999999998887632 2 7799999999999999999999999999999
Q ss_pred HHHHHHhHHH
Q 012326 426 VYRLFLDVQR 435 (466)
Q Consensus 426 ~~~~~~~~~~ 435 (466)
++.+.+.++.
T Consensus 246 Aa~lvL~hR~ 255 (584)
T PRK13406 246 AARLVLAPRA 255 (584)
T ss_pred HHHHHHHhhc
Confidence 9999988885
No 197
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.25 E-value=5.4e-10 Score=106.04 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=46.4
Q ss_pred CCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 40 EGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++|+|.+..|+.+......+-.|.+. .++||+|++|||||++++++..++.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pa-nnvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPA-NNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCC-cceEEecCCCCCHHHHHHHHHHHHh
Confidence 89999999999998777778888865 9999999999999999999998885
No 198
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.25 E-value=1.2e-09 Score=106.79 Aligned_cols=128 Identities=20% Similarity=0.186 Sum_probs=89.7
Q ss_pred cceeeeeccccccH-------HHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHH
Q 012326 290 PGVLFIDEVHMLDV-------ECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRD 362 (466)
Q Consensus 290 ~~vl~iDEi~~l~~-------~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~ 362 (466)
-.+++|||+|.+-. ++++.|..+..+-..|+|++.|.... +.-.-.+.+.+|+..+.+++...+
T Consensus 146 vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~---------~al~~D~QLa~RF~~~~Lp~W~~d 216 (302)
T PF05621_consen 146 VRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAY---------RALRTDPQLASRFEPFELPRWELD 216 (302)
T ss_pred CcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHH---------HHhccCHHHHhccCCccCCCCCCC
Confidence 46999999999732 44555555545555688877775411 012334679999988888886654
Q ss_pred -HHHHHHHHHHhhcC----Cc-cCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 363 -EIRKILDIRCQEED----VE-MAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 363 -el~~iL~~~~~~~~----~~-i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
+....|...-.... -. -+++...+|...+ +|.+....++|..|+..|..+|.+.||.+.++.+-
T Consensus 217 ~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s-~G~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~~~ 286 (302)
T PF05621_consen 217 EEFRRLLASFERALPLRKPSNLASPELARRIHERS-EGLIGELSRLLNAAAIAAIRSGEERITREILDKID 286 (302)
T ss_pred cHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHhcCCceecHHHHhhCC
Confidence 44455544333221 12 3566778999999 59999999999999999999999999999888753
No 199
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.22 E-value=5.1e-10 Score=119.04 Aligned_cols=130 Identities=19% Similarity=0.206 Sum_probs=87.2
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCC-----------Ce-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMA-----------PI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~-----------~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.|.|||||++.|+...+..|++.+++... .+ +|.+|+.... .......+.++|..|+ ..++
T Consensus 323 gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~-----~~v~~g~Fr~dL~yrL~~~~I~ 397 (538)
T PRK15424 323 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLE-----EDVRQGRFRRDLFYRLSILRLQ 397 (538)
T ss_pred CCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHH-----HHHhcccchHHHHHHhcCCeec
Confidence 57999999999999999999999986421 12 5555554110 0011234556777887 5677
Q ss_pred cCCCCH--HHHHHHHHHHHhh----cCCccCHHHH-------HHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHH
Q 012326 356 TKPYTR--DEIRKILDIRCQE----EDVEMAEDAK-------QLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQD 422 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~~~~----~~~~i~~~~l-------~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~ 422 (466)
++|+.+ +++..++...+++ .+..++++++ +.|..+.-.||+|.+-++++.++.++.......++.++
T Consensus 398 lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~ 477 (538)
T PRK15424 398 LPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQF 477 (538)
T ss_pred CCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHH
Confidence 888765 4565555555443 4667887776 56666655699999999999998776433345677666
Q ss_pred HH
Q 012326 423 ID 424 (466)
Q Consensus 423 v~ 424 (466)
+.
T Consensus 478 l~ 479 (538)
T PRK15424 478 LQ 479 (538)
T ss_pred hh
Confidence 54
No 200
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1e-10 Score=117.17 Aligned_cols=74 Identities=26% Similarity=0.387 Sum_probs=61.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccC-CHH-H-HHHHHHHHHHc-ccccCceEEEEcceeeee
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM-SKT-E-ALMQAFRKAIG-VRIKEEAEVIEGEVVEVQ 142 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~-~~~-~-~l~~~~~~a~~-~~~~~~~ii~~dEid~~~ 142 (466)
.|+||.||+|+|||.+|+.+|+.++ +||..-.|..+.-..+ +++ + .+.+++..|-. +..-+..|+|+||+|.|.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ld--VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLD--VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhC--CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 6899999999999999999999998 9999999988877754 443 2 68888865543 444588999999999986
No 201
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.22 E-value=3.3e-10 Score=117.06 Aligned_cols=127 Identities=24% Similarity=0.324 Sum_probs=88.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------C----Ce-EEEEeccceeEeecccccCCCCCChhHHhhhhhhc--
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------A----PI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIIS-- 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------~----~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~-- 355 (466)
.|.||||||..|+.+.|..|++++++.. . .+ ||.+||+..... .....+-++|.-|+.+++
T Consensus 236 GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~-----v~~G~FReDLyyRLnV~~i~ 310 (464)
T COG2204 236 GGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEE-----VAAGRFREDLYYRLNVVPLR 310 (464)
T ss_pred CceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHH-----HHcCCcHHHHHhhhccceec
Confidence 5799999999999999999999998632 1 12 666666521111 112566788999996554
Q ss_pred cCCCCH--HHHH----HHHHHHHhhcC---CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHH
Q 012326 356 TKPYTR--DEIR----KILDIRCQEED---VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDID 424 (466)
Q Consensus 356 ~~pl~~--~el~----~iL~~~~~~~~---~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~ 424 (466)
++|+-+ +++- ..++..|++.+ ..++++++..|..+.=.||+|.+.|.++++..++. .+.|+.+++-
T Consensus 311 iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~---~~~i~~~~l~ 385 (464)
T COG2204 311 LPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSE---GPEIEVEDLP 385 (464)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCC---ccccchhhcc
Confidence 555543 2222 33444444443 47999999999998767999999999999987773 4556665543
No 202
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.22 E-value=4.1e-10 Score=119.78 Aligned_cols=163 Identities=19% Similarity=0.151 Sum_probs=102.9
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCC-----------Ce-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMA-----------PI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~-----------~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.|.|||||++.|+...+..|++.+++... .+ +|.+|+.... .......+.++|..|+ ..++
T Consensus 308 gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~-----~~v~~g~fr~dL~~rL~~~~I~ 382 (526)
T TIGR02329 308 RGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALT-----TAVQQGRFRRDLFYRLSILRIA 382 (526)
T ss_pred CceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHH-----HHhhhcchhHHHHHhcCCcEEe
Confidence 57999999999999999999999986421 12 5555543110 0011234556777776 5677
Q ss_pred cCCCCH--HHHHHHHHHHHh----hcCCccCHHHHHH-------HHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHH
Q 012326 356 TKPYTR--DEIRKILDIRCQ----EEDVEMAEDAKQL-------LTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQD 422 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~~~----~~~~~i~~~~l~~-------l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~ 422 (466)
++|+.+ +++..++...+. ..++.++++++.. |....-.||+|.+-++++.+...+.......|+.++
T Consensus 383 lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~ 462 (526)
T TIGR02329 383 LPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDV 462 (526)
T ss_pred CCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHH
Confidence 888766 455555444443 3356799999988 877776799999999999987765322345788887
Q ss_pred HHHHHHHHH-h------HHHHHHHHHHHHHHHHhhhhhccCc
Q 012326 423 IDRVYRLFL-D------VQRSTQYLMEYQSQYINEVTIEADE 457 (466)
Q Consensus 423 v~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (466)
+.....-.. . .......+.+.++++|...-.+..-
T Consensus 463 l~~~~~~~~~~~~~~~~~~~~l~~~~~~Er~~I~~aL~~~~G 504 (526)
T TIGR02329 463 LRALAPELAEASGKGKTSALSLRERSRVEALAVRAALERFGG 504 (526)
T ss_pred hhhhchhhcccccccccCccchHHHHHHHHHHHHHHHHHcCC
Confidence 654321110 0 0001112357788888666554443
No 203
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.21 E-value=5.3e-11 Score=119.38 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=60.4
Q ss_pred ccC-CcCCcHHHHHHHHHHHHHHHcCCC-CCceEEEecCCCCChHHHHHHHHHHcCCCC-----ceEeeec----cceec
Q 012326 38 VSE-GMVGQLPARKAAGVILQMIKEGKI-AGRAVLIAGQPGTGKTAIAMGMAKSLGLET-----PFAMISG----SEIFS 106 (466)
Q Consensus 38 ~~~-~lvG~~~~k~~l~~~l~~l~~~~~-~~~~iLL~GppGtGKT~lA~~ia~~l~~~~-----p~~~i~~----~~~~~ 106 (466)
+|+ +++|+++++.++...+.....|.. ..+.++|+||||+|||++|+++++.++... |+..+.. +.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e 127 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHE 127 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCcc
Confidence 345 999999999988777666555433 347889999999999999999999998522 7777766 44333
Q ss_pred ccCCHH-HHHHHHHHHHHc
Q 012326 107 LEMSKT-EALMQAFRKAIG 124 (466)
Q Consensus 107 ~e~~~~-~~l~~~~~~a~~ 124 (466)
.-++-. ..+++.|....+
T Consensus 128 ~Pl~l~p~~~r~~~~~~~~ 146 (361)
T smart00763 128 DPLHLFPDELREDLEDEYG 146 (361)
T ss_pred CCcccCCHHHHHHHHHHhC
Confidence 322222 245666655554
No 204
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.20 E-value=6.6e-10 Score=117.01 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=90.9
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------------CCe-EEEEeccceeEeecc-cc-cCC-------CCCChh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------------API-LVVATNRGITRIRGT-NY-KSA-------HGIPMD 346 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------------~~i-iil~tn~~~~~~~~~-~~-~~~-------~~l~~~ 346 (466)
.+++||||++.++...+..|.+.+|+.. ..+ +|.++|....-.-+. .+ -.| ..++.+
T Consensus 295 gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~p 374 (506)
T PRK09862 295 NGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGP 374 (506)
T ss_pred CCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHh
Confidence 5799999999999999999999997643 123 444444311100000 00 001 368889
Q ss_pred HHhhh-hhhccCCCCHH-------------HHHHH-HHHHHh------hc-----------CCccCHHHHHHHHHhc--C
Q 012326 347 LLDRL-LIISTKPYTRD-------------EIRKI-LDIRCQ------EE-----------DVEMAEDAKQLLTRVG--E 392 (466)
Q Consensus 347 llsR~-~~i~~~pl~~~-------------el~~i-L~~~~~------~~-----------~~~i~~~~l~~l~~~a--~ 392 (466)
+++|| +.+.+.+++.+ ++++. +..+.. .. -+.+++++...+.... .
T Consensus 375 lLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~ 454 (506)
T PRK09862 375 FLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHL 454 (506)
T ss_pred HHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999 55667766432 23211 111110 00 1355666655544322 1
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 393 GTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 393 ~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
+-+.|....+|+.|.++|..++++.|+.+||.+|+.+-
T Consensus 455 ~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 455 GLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 36899999999999999999999999999999999765
No 205
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.19 E-value=7.2e-10 Score=111.72 Aligned_cols=116 Identities=23% Similarity=0.301 Sum_probs=81.2
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.|+|||||++.|+...+..|.+.+++.. ..+ +|++|+.... .......+.++|..|+ ..+.
T Consensus 101 gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~-----~l~~~g~f~~dL~~~l~~~~i~ 175 (326)
T PRK11608 101 GGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP-----AMVAEGKFRADLLDRLAFDVVQ 175 (326)
T ss_pred CCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHH-----HHHHcCCchHHHHHhcCCCEEE
Confidence 5799999999999999999999997632 123 4555443100 0011245668888898 4677
Q ss_pred cCCCCH--HHHHHHHHHH----HhhcC----CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 012326 356 TKPYTR--DEIRKILDIR----CQEED----VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~----~~~~~----~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a 410 (466)
++|+.+ +++..++... +...+ ..++++++..|....=.||+|.+-++++.+...+
T Consensus 176 lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 176 LPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 888765 3555555443 33323 3589999999999886799999999999987654
No 206
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.18 E-value=8.5e-10 Score=117.81 Aligned_cols=117 Identities=25% Similarity=0.308 Sum_probs=83.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.|+|||||++.|+.+.+..|.+.+++.. ..+ +|.+|+.... .......+.++|..|+ ..|+
T Consensus 282 gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~-----~~~~~~~f~~dL~~rl~~~~i~ 356 (509)
T PRK05022 282 GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLR-----EEVRAGRFRADLYHRLSVFPLS 356 (509)
T ss_pred CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHH-----HHHHcCCccHHHHhcccccEee
Confidence 5799999999999999999999997642 123 5666654110 0111245677888887 4567
Q ss_pred cCCCCH--HHHHHHHHHHH----hhc---CCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 012326 356 TKPYTR--DEIRKILDIRC----QEE---DVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ 411 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~~----~~~---~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~ 411 (466)
++|+.+ +++..++...+ .+. .+.++++++..|..+.-.||+|.+-+.++.++..+.
T Consensus 357 lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 357 VPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred CCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 888765 34544444333 222 357999999999998767999999999999987764
No 207
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.18 E-value=4.8e-10 Score=123.09 Aligned_cols=129 Identities=18% Similarity=0.222 Sum_probs=89.9
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCC-----------Ce-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMA-----------PI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~-----------~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.|+|||||++.|+...+..|++++++... .+ +|.+|+.... .......+.++|..|+ ..+.
T Consensus 417 ~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~-----~~~~~~~f~~dL~~~l~~~~i~ 491 (638)
T PRK11388 417 GGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLA-----MLVEQNRFSRQLYYALHAFEIT 491 (638)
T ss_pred CCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHH-----HHHhcCCChHHHhhhhceeEEe
Confidence 57999999999999999999999976431 22 5555554110 0111245566777777 5566
Q ss_pred cCCCCHH--HHHHHHHHHHhhc------CCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHH
Q 012326 356 TKPYTRD--EIRKILDIRCQEE------DVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRV 426 (466)
Q Consensus 356 ~~pl~~~--el~~iL~~~~~~~------~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~ 426 (466)
++|+.+- ++..++...+... .+.+++++++.|..+.-.||+|.+.++++.+...+ ....|+.+++...
T Consensus 492 lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~ 567 (638)
T PRK11388 492 IPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEH 567 (638)
T ss_pred CCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchh
Confidence 8887663 5555554444322 35789999999999886699999999999986554 3457887776543
No 208
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.18 E-value=7.6e-10 Score=113.21 Aligned_cols=116 Identities=21% Similarity=0.271 Sum_probs=82.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC---------C--Ce-EEEEeccceeEeecccccCCCCCChhHHhhhhh--hc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM---------A--PI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLI--IS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~---------~--~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~--i~ 355 (466)
.|.+|+|||..|+...|..|++++++.- . .+ +|.+||+.... ..-...+-.+|.-|+-+ +.
T Consensus 318 GGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~-----~V~~G~FRaDLYyRLsV~Pl~ 392 (550)
T COG3604 318 GGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEE-----MVRDGEFRADLYYRLSVFPLE 392 (550)
T ss_pred CCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHH-----HHHcCcchhhhhhcccccccC
Confidence 5799999999999999999999998732 1 23 77888872211 11124555678888844 44
Q ss_pred cCCCCH-----HHHHHHHHHHHhhc----CCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 012326 356 TKPYTR-----DEIRKILDIRCQEE----DVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 356 ~~pl~~-----~el~~iL~~~~~~~----~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a 410 (466)
++|+-+ --+...+...++.+ .+.+++++++.+.+..-.||+|..-++++++..+|
T Consensus 393 lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 393 LPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 566543 12333333333332 35899999999999987899999999999998877
No 209
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.17 E-value=1.1e-10 Score=108.45 Aligned_cols=46 Identities=37% Similarity=0.580 Sum_probs=36.8
Q ss_pred cCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 39 SEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 39 ~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
|++|+||+.+|+++..++. | ++++||+||||||||++|+++...+-
T Consensus 2 f~dI~GQe~aKrAL~iAAa----G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA----G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH----C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHc----C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 4899999999999876654 2 48999999999999999999998763
No 210
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.17 E-value=1.9e-09 Score=116.58 Aligned_cols=128 Identities=23% Similarity=0.285 Sum_probs=92.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------------C--Ce---EEEEeccceeEeecccccCCCCCChhH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------------A--PI---LVVATNRGITRIRGTNYKSAHGIPMDL 347 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------------~--~i---iil~tn~~~~~~~~~~~~~~~~l~~~l 347 (466)
.|+|||||++.|++..+..|++++++.. . |+ +|+++|. .....+.++|
T Consensus 227 GGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~----------~ll~~~dpdL 296 (637)
T PRK13765 227 KGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNL----------DALENMHPAL 296 (637)
T ss_pred CcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCc----------CHHHhhhHHH
Confidence 6899999999999999999999996432 1 11 4455543 1124567889
Q ss_pred Hhhhh----hhccCC---CCHHHHHHHHHHHHhhc-----CCccCHHHHHHHHHhcC----CC-----CHHHHHHHHHHH
Q 012326 348 LDRLL----IISTKP---YTRDEIRKILDIRCQEE-----DVEMAEDAKQLLTRVGE----GT-----SLRYAIHLITAA 406 (466)
Q Consensus 348 lsR~~----~i~~~p---l~~~el~~iL~~~~~~~-----~~~i~~~~l~~l~~~a~----~g-----~~R~ai~lL~~a 406 (466)
.+||- .+.|.+ -+.+.....+...++.. ...++++++..|++.+. .. ..|.+.++++.|
T Consensus 297 ~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a 376 (637)
T PRK13765 297 RSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVA 376 (637)
T ss_pred HHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHH
Confidence 99984 244543 44566666665544432 23799999999998752 11 378899999999
Q ss_pred HHHHhhhcCCccCHHHHHHHH
Q 012326 407 ALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 407 ~~~a~~~~~~~It~~~v~~~~ 427 (466)
...|...+.+.|+.+||.++.
T Consensus 377 ~~~a~~~~~~~i~~~~v~~a~ 397 (637)
T PRK13765 377 GDIARSEGAELTTAEHVLEAK 397 (637)
T ss_pred HHHHHhhccceecHHHHHHHH
Confidence 999988899999999998887
No 211
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.15 E-value=1.1e-09 Score=117.09 Aligned_cols=126 Identities=23% Similarity=0.300 Sum_probs=86.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.+.|||||++.|+...+..|.+.+++.. ..+ +|++|+.... .......+.++|..|+ ..++
T Consensus 299 ~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~-----~l~~~g~f~~dL~~rL~~~~i~ 373 (520)
T PRK10820 299 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLV-----ELVQKGEFREDLYYRLNVLTLN 373 (520)
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHH-----HHHHcCCccHHHHhhcCeeEEe
Confidence 5799999999999999999999997632 122 4555543110 0011234567788887 5677
Q ss_pred cCCCCH--HHHHHH----HHHHHhhcC---CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHH
Q 012326 356 TKPYTR--DEIRKI----LDIRCQEED---VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDI 423 (466)
Q Consensus 356 ~~pl~~--~el~~i----L~~~~~~~~---~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v 423 (466)
++|+.+ +++..+ +...+.+.+ ..++++++++|....-.||+|.+-+.+..+...+ .+..|+.+++
T Consensus 374 lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 374 LPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred CCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 888776 344443 333344443 3799999999999865799999999999986654 3456777764
No 212
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=5.1e-10 Score=102.70 Aligned_cols=122 Identities=17% Similarity=0.216 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCC
Q 012326 266 RAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIP 344 (466)
Q Consensus 266 ~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~ 344 (466)
.+++|+.+..+... .. .+.++|+++|.|+.+++++|++++|+|+..+ ||++|+. +..++
T Consensus 39 Vd~iReii~~~~~~---~~-----~~k~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~------------~~~ll 98 (206)
T PRK08485 39 IEDAKEVIAEAYIA---ES-----EEKIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKS------------KNLLL 98 (206)
T ss_pred HHHHHHHHHHHhhC---CC-----CcEEEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCC------------hHhCc
Confidence 46666665543221 11 2345688999999999999999999998876 8888876 88999
Q ss_pred hhHHhhhhh-------------hccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 012326 345 MDLLDRLLI-------------ISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALA 409 (466)
Q Consensus 345 ~~llsR~~~-------------i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~ 409 (466)
++++|||+. +.+++++.+++.+.|+. .+++++...+++++.|+..+ .|++|.++.+.+.+..+
T Consensus 99 pTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la-~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 99 PTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLL-KECVKYKIPLNEEELEY 174 (206)
T ss_pred hHHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHH-HHHHHHHcCccHHHHHH
Confidence 999999975 77899999999999998 78888888999999999998 69999998887766433
No 213
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.11 E-value=3e-10 Score=110.57 Aligned_cols=102 Identities=13% Similarity=0.184 Sum_probs=86.5
Q ss_pred ccceeEeecccccCC-CCCChhHHhhhhhhccCCCCHHHHHHHHHHHHhhc------CCccCHHHHHHHHHhcCCCCHHH
Q 012326 326 NRGITRIRGTNYKSA-HGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEE------DVEMAEDAKQLLTRVGEGTSLRY 398 (466)
Q Consensus 326 n~~~~~~~~~~~~~~-~~l~~~llsR~~~i~~~pl~~~el~~iL~~~~~~~------~~~i~~~~l~~l~~~a~~g~~R~ 398 (466)
.+|.+.++|+++.|| +.+.++|+|||.++.|+|++.+++..+|++-+... .+.++++++++|+..+ +||.|.
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a-~GDaR~ 83 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYN-EGDCRK 83 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhc-CCHHHH
Confidence 567888999999999 79999999999999999999999999999888642 3689999999999999 699999
Q ss_pred HHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 399 AIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 399 ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
++|+|+.+...+...+...||.++++++..
T Consensus 84 aLN~LE~a~~~~~~~~~~~it~~~~~~~~~ 113 (300)
T PRK14700 84 ILNLLERMFLISTRGDEIYLNKELFDQAVG 113 (300)
T ss_pred HHHHHHHHHhhccccCCCccCHHHHHHHHh
Confidence 999999976533222223499999998764
No 214
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.10 E-value=3.3e-10 Score=97.08 Aligned_cols=57 Identities=26% Similarity=0.416 Sum_probs=36.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCeEEEEeccceeEeecccccCCCCCChhHHhhhh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------APILVVATNRGITRIRGTNYKSAHGIPMDLLDRLL 352 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~ 352 (466)
..|+++||+++.++..+++|++++++.. .|+++++|.+.. +....+.+|+++++|+.
T Consensus 63 ~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~------e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 63 TNILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPV------EQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--------S------HHHHTTSS
T ss_pred hceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCcc------ccCceecCCHHHhcccc
Confidence 3599999999999999999999998742 356666664311 11223688999999984
No 215
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.9e-08 Score=105.88 Aligned_cols=76 Identities=28% Similarity=0.391 Sum_probs=67.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDR 145 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~ 145 (466)
..+||+|+||||||++.+++|++++ .+++.++|.++.+--.+.++ .+...|.++..- +|++||.--+|-+.++.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg--~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~---~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELG--LHLLEVDCYELVAESASHTETKLQAIFSRARRC---SPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhC--CceEeccHHHHhhcccchhHHHHHHHHHHHhhc---CceEEEEeccceeeecC
Confidence 6789999999999999999999999 88999999999998888888 888889888765 59999999999988655
Q ss_pred CC
Q 012326 146 PA 147 (466)
Q Consensus 146 ~~ 147 (466)
..
T Consensus 507 dg 508 (953)
T KOG0736|consen 507 DG 508 (953)
T ss_pred CC
Confidence 43
No 216
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.04 E-value=6.4e-09 Score=115.08 Aligned_cols=116 Identities=22% Similarity=0.323 Sum_probs=79.2
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.|+|||||++.++.+.+..|.+.+++.. ..+ +|.+|+..... ......+..+|..|+ ..|.
T Consensus 471 ~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~-----~~~~~~f~~~L~~~l~~~~i~ 545 (686)
T PRK15429 471 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK-----MVADREFRSDLYYRLNVFPIH 545 (686)
T ss_pred CCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHH-----HHHcCcccHHHHhccCeeEEe
Confidence 5799999999999999999999997632 123 55555431100 011234556677776 4567
Q ss_pred cCCCCH--HHHHHHHHHH----HhhcC--C-ccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 012326 356 TKPYTR--DEIRKILDIR----CQEED--V-EMAEDAKQLLTRVGEGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~----~~~~~--~-~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a 410 (466)
++|+.+ +++..++... +...+ + .+++++++.|....-.||+|.+-++++.+...+
T Consensus 546 lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 546 LPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred CCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 788765 3454444433 33223 2 589999999999876799999999999997655
No 217
>PHA02244 ATPase-like protein
Probab=99.04 E-value=1.4e-08 Score=102.16 Aligned_cols=73 Identities=25% Similarity=0.266 Sum_probs=49.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTK 357 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~ 357 (466)
.++++|||++.++++.+..|+.+++... ..+ +|+++|....- -...+.....+++++++||..+.|.
T Consensus 181 GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G-~~~~y~G~k~L~~AllDRFv~I~~d 259 (383)
T PHA02244 181 GGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKG-ADHIYVARNKIDGATLDRFAPIEFD 259 (383)
T ss_pred CCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccC-cccccCCCcccCHHHHhhcEEeeCC
Confidence 4699999999999999999999987421 233 55556531000 0001112368899999999989988
Q ss_pred CCCHHH
Q 012326 358 PYTRDE 363 (466)
Q Consensus 358 pl~~~e 363 (466)
.+++.|
T Consensus 260 yp~~~E 265 (383)
T PHA02244 260 YDEKIE 265 (383)
T ss_pred CCcHHH
Confidence 877433
No 218
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=2.3e-08 Score=94.52 Aligned_cols=121 Identities=12% Similarity=0.116 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCC
Q 012326 266 RAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIP 344 (466)
Q Consensus 266 ~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~ 344 (466)
.+++|+... .+......++ +.|++|+++|.|+.++.++|+|++|+|+..+ ||++|++ +..++
T Consensus 71 IdqIReL~~-~l~~~p~~g~----~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~------------~~~LL 133 (263)
T PRK06581 71 IEQIRKLQD-FLSKTSAISG----YKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSR------------AASII 133 (263)
T ss_pred HHHHHHHHH-HHhhCcccCC----cEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCC------------hhhCc
Confidence 355665332 2323333444 6799999999999999999999999998866 7777865 88999
Q ss_pred hhHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012326 345 MDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAA 407 (466)
Q Consensus 345 ~~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~ 407 (466)
++++|||+.+.|..+......+.....+.. ..+..-+++|.+.. .-|....+...+...
T Consensus 134 pTIrSRCq~i~~~~p~~~~~~e~~~~~~~p---~~~~~~l~~i~~~~-~~d~~~w~~~~~~~~ 192 (263)
T PRK06581 134 STIRSRCFKINVRSSILHAYNELYSQFIQP---IADNKTLDFINRFT-TKDRELWLDFIDNLL 192 (263)
T ss_pred hhHhhceEEEeCCCCCHHHHHHHHHHhccc---ccccHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 999999999999999998777777654432 24555688888876 355545454444443
No 219
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.00 E-value=9.4e-09 Score=89.36 Aligned_cols=58 Identities=38% Similarity=0.476 Sum_probs=39.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC------CCe-EEEEeccceeEeecccccCC-CCCChhHHhhh-hhhccCC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM------API-LVVATNRGITRIRGTNYKSA-HGIPMDLLDRL-LIISTKP 358 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~------~~i-iil~tn~~~~~~~~~~~~~~-~~l~~~llsR~-~~i~~~p 358 (466)
++++++||++.+.......+...++... ..+ +|++++. .+ ..+++.+.+|| ..+.+.|
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~-----------~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNR-----------PLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCc-----------cccCCcChhHHhhhccEeecCC
Confidence 5799999999997777777777776642 233 5556553 11 26778899999 6665543
No 220
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.97 E-value=4.6e-08 Score=108.05 Aligned_cols=142 Identities=20% Similarity=0.227 Sum_probs=90.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------------CCe-EEEEeccceeEeecc-cccCCCCCChhHHhhh-hh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------------API-LVVATNRGITRIRGT-NYKSAHGIPMDLLDRL-LI 353 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------------~~i-iil~tn~~~~~~~~~-~~~~~~~l~~~llsR~-~~ 353 (466)
.|+++|||++.|+...+.+|+.+|+... ..+ +|.++|--.-++... +...-..+|++|+||| .+
T Consensus 558 gGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLI 637 (915)
T PTZ00111 558 GGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLI 637 (915)
T ss_pred CCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEE
Confidence 5799999999999999999999997632 233 444554311111100 1111257889999999 33
Q ss_pred -hccCCCCHHH-----------------------------------------------------HHHHHHHHHhh-cCCc
Q 012326 354 -ISTKPYTRDE-----------------------------------------------------IRKILDIRCQE-EDVE 378 (466)
Q Consensus 354 -i~~~pl~~~e-----------------------------------------------------l~~iL~~~~~~-~~~~ 378 (466)
+.+.+++.+. +++.+.. |+. ..-.
T Consensus 638 f~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~Y-AR~~~~P~ 716 (915)
T PTZ00111 638 YLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKF-SKLHCFPK 716 (915)
T ss_pred EEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHH-HhccCCCC
Confidence 2344444333 2222221 111 1335
Q ss_pred cCHHHHHHHHHhc----C--------------------------C------CCHHHHHHHHHHHHHHHhhhcCCccCHHH
Q 012326 379 MAEDAKQLLTRVG----E--------------------------G------TSLRYAIHLITAAALASQKRKGKVVEVQD 422 (466)
Q Consensus 379 i~~~~l~~l~~~a----~--------------------------~------g~~R~ai~lL~~a~~~a~~~~~~~It~~~ 422 (466)
+++++.+.|.+.. . . -.+|.+-.+++.+-++|+..=+..|+.+|
T Consensus 717 Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~D 796 (915)
T PTZ00111 717 LSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPAD 796 (915)
T ss_pred CCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHH
Confidence 7888888886521 0 0 13788888888888888888889999999
Q ss_pred HHHHHHHHHh
Q 012326 423 IDRVYRLFLD 432 (466)
Q Consensus 423 v~~~~~~~~~ 432 (466)
|+.|+.++..
T Consensus 797 v~~Ai~L~~~ 806 (915)
T PTZ00111 797 ALQAVQIVKS 806 (915)
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 221
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.94 E-value=1.2e-07 Score=88.92 Aligned_cols=116 Identities=26% Similarity=0.307 Sum_probs=73.2
Q ss_pred cceeeeeccccccH-HHHHHHHHHhhh----cCCCeEEEEeccceeEeecccccCC---CCCCh--------hHHhhh-h
Q 012326 290 PGVLFIDEVHMLDV-ECFSFLNRALEN----EMAPILVVATNRGITRIRGTNYKSA---HGIPM--------DLLDRL-L 352 (466)
Q Consensus 290 ~~vl~iDEi~~l~~-~~~~~L~~~le~----~~~~iiil~tn~~~~~~~~~~~~~~---~~l~~--------~llsR~-~ 352 (466)
+=|+|.|+.-.=.. ....+|..+++. .+.++++.+|.+.-..+.-.-..++ ..+.+ .|-+|| .
T Consensus 140 kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGL 219 (287)
T COG2607 140 KFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGL 219 (287)
T ss_pred eEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcce
Confidence 34788886654433 445566666654 4456655555433322221111111 12221 477899 8
Q ss_pred hhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHH-----HHhcCCCCHHHHHHHHHHH
Q 012326 353 IISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLL-----TRVGEGTSLRYAIHLITAA 406 (466)
Q Consensus 353 ~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l-----~~~a~~g~~R~ai~lL~~a 406 (466)
.+.|.|.+.++..+++...++..++.++++.++.= .... ..+.|-|.+.++..
T Consensus 220 wL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg-~RSGR~A~QF~~~~ 277 (287)
T COG2607 220 WLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRG-GRSGRVAWQFIRDL 277 (287)
T ss_pred eecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCccHhHHHHHHHH
Confidence 99999999999999999999999999977555442 2222 46778888888765
No 222
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.93 E-value=3.4e-08 Score=103.83 Aligned_cols=126 Identities=21% Similarity=0.295 Sum_probs=85.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.|+|||||++.|+...+..|.+.+++.. ..+ +|++|+.... .......+.++|..|+ ..++
T Consensus 234 ~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~-----~~~~~~~~~~~L~~~l~~~~i~ 308 (445)
T TIGR02915 234 GGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLK-----RMIAEGTFREDLFYRIAEISIT 308 (445)
T ss_pred CCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHH-----HHHHcCCccHHHHHHhccceec
Confidence 5799999999999999999999997642 122 5555543110 0001145667788888 5567
Q ss_pred cCCCCH--HHHHHHHHHHH----hhcC---CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHH
Q 012326 356 TKPYTR--DEIRKILDIRC----QEED---VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDI 423 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~~----~~~~---~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v 423 (466)
++|+.. +++..++...+ ...+ ..++++++..|....-.||+|.+-++++.+...+ ....|+.+++
T Consensus 309 lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 309 IPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred CCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 777655 23443333333 2222 4699999999999876799999999999987655 3456776665
No 223
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.92 E-value=9.9e-09 Score=93.47 Aligned_cols=60 Identities=25% Similarity=0.387 Sum_probs=41.9
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCC-CCceEeeeccce
Q 012326 42 MVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGL-ETPFAMISGSEI 104 (466)
Q Consensus 42 lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~-~~p~~~i~~~~~ 104 (466)
++|.+.+.+.+...+..+. ..+.++||+|++||||+.+|++|.+.... .-||+.++|+.+
T Consensus 1 liG~s~~m~~~~~~~~~~a---~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA---SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL 61 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT---TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS
T ss_pred CEeCCHHHHHHHHHHHHHh---CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh
Confidence 5777777776644444332 23489999999999999999999885543 579999999764
No 224
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.92 E-value=4.7e-09 Score=92.22 Aligned_cols=34 Identities=47% Similarity=0.715 Sum_probs=28.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccc
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSE 103 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~ 103 (466)
+++|+||||||||++|+.+|+.++ .++..+.++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~--~~~~~i~~~~ 34 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG--RPVIRINCSS 34 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT--CEEEEEE-TT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh--cceEEEEecc
Confidence 589999999999999999999997 5666666543
No 225
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.92 E-value=3e-08 Score=104.94 Aligned_cols=127 Identities=20% Similarity=0.291 Sum_probs=87.5
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCC-----------Ce-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMA-----------PI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~-----------~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.|.+||||++.|+...+..|.+.+++... .+ +|++|+.... .......+.++|..|+ ..+.
T Consensus 233 ~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~-----~~~~~~~~~~~L~~~l~~~~i~ 307 (469)
T PRK10923 233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLE-----QRVQEGKFREDLFHRLNVIRVH 307 (469)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHH-----HHHHcCCchHHHHHHhcceeec
Confidence 57899999999999999999999976421 12 4555543100 0011245668899998 5677
Q ss_pred cCCCCH--HHHHHHHHHHHh----hcC---CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHH
Q 012326 356 TKPYTR--DEIRKILDIRCQ----EED---VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDID 424 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~~~----~~~---~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~ 424 (466)
++|+.+ +++..++...++ ..+ ..++++++..|..+.-.||+|.+-++++.+...+ .+..|+.+++.
T Consensus 308 ~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~ 382 (469)
T PRK10923 308 LPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLP 382 (469)
T ss_pred CCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 788665 345544444433 222 2589999999999987799999999999987655 34567777763
No 226
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.90 E-value=3.6e-08 Score=104.09 Aligned_cols=127 Identities=22% Similarity=0.294 Sum_probs=91.2
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.+.|||||++.|+.+.+..|++.+++.. ..+ +|++|+.... .......+.++|..|+ ..++
T Consensus 229 ~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~-----~~~~~~~f~~~L~~rl~~~~i~ 303 (463)
T TIGR01818 229 GGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLE-----ALVRQGKFREDLFHRLNVIRIH 303 (463)
T ss_pred CCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHH-----HHHHcCCcHHHHHHHhCcceec
Confidence 5799999999999999999999997642 122 5555543110 0011235556888887 5778
Q ss_pred cCCCC--HHHHHHHHHHHHhhc----C---CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHH
Q 012326 356 TKPYT--RDEIRKILDIRCQEE----D---VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDID 424 (466)
Q Consensus 356 ~~pl~--~~el~~iL~~~~~~~----~---~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~ 424 (466)
++|+. .+++..++...++.. + ..++++++..|..+.-.||+|.+-++++.+...+ ....|+.+++.
T Consensus 304 lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~ 378 (463)
T TIGR01818 304 LPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLP 378 (463)
T ss_pred CCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhch
Confidence 88988 567777666554332 3 4789999999999986799999999999987665 34567777764
No 227
>PRK15115 response regulator GlrR; Provisional
Probab=98.90 E-value=1.1e-07 Score=100.00 Aligned_cols=159 Identities=14% Similarity=0.198 Sum_probs=97.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCC-----------Ce-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMA-----------PI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~-----------~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.++|||||+|.|+...+..|.+.+++... .+ +|++|+.... .......+.++|..|+ ..+.
T Consensus 229 ~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~-----~~~~~~~f~~~l~~~l~~~~i~ 303 (444)
T PRK15115 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLP-----KAMARGEFREDLYYRLNVVSLK 303 (444)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHH-----HHHHcCCccHHHHHhhceeeec
Confidence 57999999999999999999999986431 22 4444443100 0001135556777776 4566
Q ss_pred cCCCCH--HHHHHHHHHHHhh----cC---CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHH
Q 012326 356 TKPYTR--DEIRKILDIRCQE----ED---VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRV 426 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~~~~----~~---~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~ 426 (466)
++|+.. +++..++...++. .+ ..+++++++.|....-.||+|.+.+.++.++..+ ....|+.+++...
T Consensus 304 lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 380 (444)
T PRK15115 304 IPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQA 380 (444)
T ss_pred CCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhhh
Confidence 777654 3454444443332 22 2589999999999885699999999999987654 3557887776533
Q ss_pred HHHHHh-HHHHHHHHHHHHHHHHhhhhhccC
Q 012326 427 YRLFLD-VQRSTQYLMEYQSQYINEVTIEAD 456 (466)
Q Consensus 427 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 456 (466)
..--.. .......+++.++.+|...-.+..
T Consensus 381 ~~~~~~~~~~~~~~~~~~E~~~i~~al~~~~ 411 (444)
T PRK15115 381 LEGENTALPTFVEARNQFELNYLRKLLQITK 411 (444)
T ss_pred hcccccccccHHHHHHHHHHHHHHHHHHHhC
Confidence 210000 000112245667777755554433
No 228
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.89 E-value=2.3e-08 Score=94.75 Aligned_cols=102 Identities=19% Similarity=0.310 Sum_probs=59.5
Q ss_pred cceeeeecccccc------HHHHHHHHHHhhhc--CCCe-EEEEe-ccceeEeecccccCCCCCChhHHhhhhhhccCCC
Q 012326 290 PGVLFIDEVHMLD------VECFSFLNRALENE--MAPI-LVVAT-NRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPY 359 (466)
Q Consensus 290 ~~vl~iDEi~~l~------~~~~~~L~~~le~~--~~~i-iil~t-n~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl 359 (466)
+.|++|||++.+. ......|.+.++.. ..++ +|+++ ..+... ....-..++..|+..+.++|+
T Consensus 119 ~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~-------~~~~~~~~~~~~~~~~~l~~l 191 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME-------EFLDDKSPLFGRFSHIELKPL 191 (234)
T ss_dssp CEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH-------HTT-TTSTTTT---EEEE---
T ss_pred cEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHH-------HhhcccCccccccceEEEeeC
Confidence 4699999999998 35566666666651 2233 33333 221000 001223356788877999999
Q ss_pred CHHHHHHHHHHHHhhcCCcc--CHHHHHHHHHhcCCCCHHHHH
Q 012326 360 TRDEIRKILDIRCQEEDVEM--AEDAKQLLTRVGEGTSLRYAI 400 (466)
Q Consensus 360 ~~~el~~iL~~~~~~~~~~i--~~~~l~~l~~~a~~g~~R~ai 400 (466)
+.++..+.+...+... ..+ +++.++.+...+ +|.+++..
T Consensus 192 ~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~-gG~P~~l~ 232 (234)
T PF01637_consen 192 SKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLT-GGNPRYLQ 232 (234)
T ss_dssp -HHHHHHHHHHHHHCC-------HHHHHHHHHHH-TT-HHHHH
T ss_pred CHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHh-CCCHHHHh
Confidence 9999999999987766 544 999999999999 48887754
No 229
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.86 E-value=3.8e-09 Score=96.51 Aligned_cols=41 Identities=37% Similarity=0.412 Sum_probs=32.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC-C-CCceEeeecccee
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG-L-ETPFAMISGSEIF 105 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~-~-~~p~~~i~~~~~~ 105 (466)
|-.++||+||+|||||.+|+++|+.+. . ..|++.++++.+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS 44 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence 346899999999999999999999997 2 3477777776543
No 230
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.86 E-value=1.4e-08 Score=112.57 Aligned_cols=150 Identities=16% Similarity=0.191 Sum_probs=107.0
Q ss_pred cceeeeeccccccH---HHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHH
Q 012326 290 PGVLFIDEVHMLDV---ECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRK 366 (466)
Q Consensus 290 ~~vl~iDEi~~l~~---~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~ 366 (466)
..|+++||+|-+.. ..+..+..+......|+++.|..+ -+.-..++.+-|+.++|..++.+++..
T Consensus 429 ~~vil~devD~~~~~dRg~v~~l~~l~~ks~~Piv~~cndr------------~~p~sr~~~~~~~~l~f~kP~~~~i~~ 496 (871)
T KOG1968|consen 429 HFLILMDEVDGMFGEDRGGVSKLSSLCKKSSRPLVCTCNDR------------NLPKSRALSRACSDLRFSKPSSELIRS 496 (871)
T ss_pred eeEEEEeccccccchhhhhHHHHHHHHHhccCCeEEEecCC------------CCccccchhhhcceeeecCCcHHHHHh
Confidence 45999999999966 557778888887788888777655 122233566667999999999999999
Q ss_pred HHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----hhhcC------CccCHHHHHHHHHHHHhHHH
Q 012326 367 ILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALAS-----QKRKG------KVVEVQDIDRVYRLFLDVQR 435 (466)
Q Consensus 367 iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a-----~~~~~------~~It~~~v~~~~~~~~~~~~ 435 (466)
.+..+|..+++.|+++.++.++..+ +||+|..++.|+...... ...+. ..++..+.+.+..+|--.+.
T Consensus 497 ri~si~~se~~ki~~~~l~~~s~~~-~~DiR~~i~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~L~~~~~ 575 (871)
T KOG1968|consen 497 RIMSICKSEGIKISDDVLEEISKLS-GGDIRQIIMQLQFWSLSKPAELPKKKGTPIKTSKKNITVKDFDAAEGLLDISRV 575 (871)
T ss_pred hhhhhhcccceecCcHHHHHHHHhc-ccCHHHHHHHHhhhhccchhhhccccCccccccccccccchhHHHhhhccHhhh
Confidence 9999999999999999999999999 599999999999874331 11111 33444455555555531111
Q ss_pred --HHHHHHHHHHHHHhhhh
Q 012326 436 --STQYLMEYQSQYINEVT 452 (466)
Q Consensus 436 --~~~~~~~~~~~~~~~~~ 452 (466)
..-..+.+..+|+.+++
T Consensus 576 ~s~~~~~~~k~~~~~ed~~ 594 (871)
T KOG1968|consen 576 ASEETSNQSKAELYFEDYS 594 (871)
T ss_pred hhhhhhccchHHHhccccc
Confidence 12334566667765553
No 231
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.83 E-value=1.5e-07 Score=99.24 Aligned_cols=159 Identities=21% Similarity=0.260 Sum_probs=98.9
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.|++||||++.|+...+..|.+.+++.. ..+ +|++|+..... ......+.+++..|+ ..+.
T Consensus 238 ~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~-----~~~~g~~~~~l~~~l~~~~i~ 312 (457)
T PRK11361 238 EGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQA-----MVKEGTFREDLFYRLNVIHLI 312 (457)
T ss_pred CCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHH-----HHHcCCchHHHHHHhccceec
Confidence 5799999999999999999999987632 113 55555531100 001235566777777 4566
Q ss_pred cCCCCH--HHHHHHHHHHHh----hcC---CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHH
Q 012326 356 TKPYTR--DEIRKILDIRCQ----EED---VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRV 426 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~~~----~~~---~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~ 426 (466)
++|+.. +++..++...+. ..+ ..+++++++.+....-.||+|.+.+.++.+...+ ....|+.+++...
T Consensus 313 ~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~ 389 (457)
T PRK11361 313 LPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQ 389 (457)
T ss_pred CCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHh
Confidence 777663 344444333322 222 4699999999999886799999999999986554 3456777776432
Q ss_pred HHHHH-----h---H---HHHHHHHHHHHHHHHhhhhhccC
Q 012326 427 YRLFL-----D---V---QRSTQYLMEYQSQYINEVTIEAD 456 (466)
Q Consensus 427 ~~~~~-----~---~---~~~~~~~~~~~~~~~~~~~~~~~ 456 (466)
...-. . . ......+++.++++|...-.+..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~E~~~i~~al~~~~ 430 (457)
T PRK11361 390 IRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQE 430 (457)
T ss_pred hhcccccccccccccccccchhhHHHHHHHHHHHHHHHHhC
Confidence 21000 0 0 00123356778888766655543
No 232
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.75 E-value=1.8e-06 Score=82.04 Aligned_cols=138 Identities=23% Similarity=0.244 Sum_probs=95.3
Q ss_pred HHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhh---hcCCCe-EEEEeccceeEeecccccCCC-CC--Chh
Q 012326 274 DTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALE---NEMAPI-LVVATNRGITRIRGTNYKSAH-GI--PMD 346 (466)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le---~~~~~i-iil~tn~~~~~~~~~~~~~~~-~l--~~~ 346 (466)
...+....+.++- +.++++||+|.+.......|..+.+ +...+. ++++.. ....+. .. ...
T Consensus 119 ~~~L~al~~~g~r---~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq---------p~L~~~lr~~~l~e 186 (269)
T COG3267 119 DRELAALVKKGKR---PVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ---------PKLRPRLRLPVLRE 186 (269)
T ss_pred HHHHHHHHHhCCC---CeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC---------cccchhhchHHHHh
Confidence 3333334445551 3789999999999988888777654 233343 222221 111120 11 135
Q ss_pred HHhhhhh-hccCCCCHHHHHHHHHHHHhhcCC---ccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHH
Q 012326 347 LLDRLLI-ISTKPYTRDEIRKILDIRCQEEDV---EMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQD 422 (466)
Q Consensus 347 llsR~~~-i~~~pl~~~el~~iL~~~~~~~~~---~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~ 422 (466)
+-.||.+ |.+.|++.++....|..+++..+. -++++++.++...+ +|=+|...+++..|...|-..+++.|+...
T Consensus 187 ~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~s-qg~P~lin~~~~~Al~~a~~a~~~~v~~a~ 265 (269)
T COG3267 187 LEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEAS-QGIPRLINNLATLALDAAYSAGEDGVSEAE 265 (269)
T ss_pred hhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHh-ccchHHHHHHHHHHHHHHHHcCCCccchhh
Confidence 7788855 999999999999999999988753 57999999999988 687777666667777777778888888776
Q ss_pred HH
Q 012326 423 ID 424 (466)
Q Consensus 423 v~ 424 (466)
++
T Consensus 266 ~~ 267 (269)
T COG3267 266 IK 267 (269)
T ss_pred cc
Confidence 65
No 233
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.1e-07 Score=105.03 Aligned_cols=51 Identities=27% Similarity=0.359 Sum_probs=43.0
Q ss_pred CCcCCcHHHHHHHHHHHHHHHcCCC---CCceEEEecCCCCChHHHHHHHHHHc
Q 012326 40 EGMVGQLPARKAAGVILQMIKEGKI---AGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~l~~~~~---~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
..|+||+++..++..++..-+.|.. |.--+||.||.|+|||-+|+++|..+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~ 615 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV 615 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH
Confidence 6799999999999888876554332 45788999999999999999999977
No 234
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.72 E-value=3.1e-07 Score=94.93 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=36.8
Q ss_pred cCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 39 SEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 39 ~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
++++++.++..+.+ +..+. .+++++|+||||||||++|+++|..+..
T Consensus 174 l~d~~i~e~~le~l---~~~L~----~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 174 LNDLFIPETTIETI---LKRLT----IKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hhcccCCHHHHHHH---HHHHh----cCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47788877776665 33333 2479999999999999999999998864
No 235
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.64 E-value=8e-07 Score=93.20 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=99.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCC-----------Ce-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMA-----------PI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~-----------~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.|++||||++.|+...+..|.+.+++... .+ +|.+|+.... ....+..+.+.|..|+ ..+.
T Consensus 234 ~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~-----~~~~~~~~~~~l~~~l~~~~i~ 308 (441)
T PRK10365 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA-----AEVNAGRFRQDLYYRLNVVAIE 308 (441)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH-----HHHHcCCchHHHHHHhccceec
Confidence 57999999999999999999999876431 12 4445443110 1111245667777777 4455
Q ss_pred cCCCCH--HHHHHHHHHHHhh----cC---CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHH
Q 012326 356 TKPYTR--DEIRKILDIRCQE----ED---VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRV 426 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~~~~----~~---~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~ 426 (466)
++|+.+ +++..++...+.+ .+ ..++++++..|....-.||+|.+.++++.+...+ ....|+.+++...
T Consensus 309 ~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~ 385 (441)
T PRK10365 309 VPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL---TGEYISERELPLA 385 (441)
T ss_pred CCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchh
Confidence 666654 2444444443332 22 4589999999999886699999999999986554 4567887776543
Q ss_pred HHHHHhHH---HHHHHHHHHHHHHHhhhhhccC
Q 012326 427 YRLFLDVQ---RSTQYLMEYQSQYINEVTIEAD 456 (466)
Q Consensus 427 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 456 (466)
........ ...+.+.+.++++|...-....
T Consensus 386 ~~~~~~~~~~~~~~~~l~~~e~~~i~~~l~~~~ 418 (441)
T PRK10365 386 IASTPIPLGQSQDIQPLVEVEKEVILAALEKTG 418 (441)
T ss_pred hcccccCcccccchhhHHHHHHHHHHHHHHHhC
Confidence 21100000 0012356778888765554433
No 236
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.61 E-value=9.4e-07 Score=87.27 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=79.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhc--
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIIS-- 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~-- 355 (466)
.|.+|+|||..|++..+..|++.+.+.. ..+ +|.+|.... .....-..+-.+|.-|+.+++
T Consensus 294 gGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL-----~~lv~~g~fReDLfyRLNVLtl~ 368 (511)
T COG3283 294 GGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNL-----VELVQKGKFREDLFYRLNVLTLN 368 (511)
T ss_pred CCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccH-----HHHHhcCchHHHHHHHhheeeec
Confidence 5789999999999999999999997642 123 333332210 011112445567778885554
Q ss_pred cCCCCHH--H----HHHHHHHHHhhcCC---ccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 012326 356 TKPYTRD--E----IRKILDIRCQEEDV---EMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ 411 (466)
Q Consensus 356 ~~pl~~~--e----l~~iL~~~~~~~~~---~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~ 411 (466)
++|+-+- + ..-.+++.+++.++ .++++.+.++.+..=.||+|...|.+-+|+...+
T Consensus 369 ~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~E 433 (511)
T COG3283 369 LPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLE 433 (511)
T ss_pred CCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhc
Confidence 4554331 1 22345666666664 7899999999998767999999999999987764
No 237
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.52 E-value=4.8e-06 Score=88.24 Aligned_cols=141 Identities=19% Similarity=0.221 Sum_probs=85.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCC--------------CeEEEEeccceeEeeccc-ccCCCCCChhHHhhh--h
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMA--------------PILVVATNRGITRIRGTN-YKSAHGIPMDLLDRL--L 352 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~--------------~iiil~tn~~~~~~~~~~-~~~~~~l~~~llsR~--~ 352 (466)
.|+=.|||+|+|++...+.|...||.-.. +-++-++|-..-+.+... ...--.||++|+||| .
T Consensus 527 ~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLI 606 (804)
T KOG0478|consen 527 NGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLI 606 (804)
T ss_pred CceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEE
Confidence 57889999999999999999999986322 124455552111111111 111137899999999 3
Q ss_pred hhccCCCCHHHHHHH------------------------HHH---HHhh-cCCccCHHHHHHHHHhcC--------CC--
Q 012326 353 IISTKPYTRDEIRKI------------------------LDI---RCQE-EDVEMAEDAKQLLTRVGE--------GT-- 394 (466)
Q Consensus 353 ~i~~~pl~~~el~~i------------------------L~~---~~~~-~~~~i~~~~l~~l~~~a~--------~g-- 394 (466)
.+-+.+.++..=+.+ |.. .+++ ....+++++.+.+..... .|
T Consensus 607 ylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~i 686 (804)
T KOG0478|consen 607 FLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQI 686 (804)
T ss_pred EEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhccccccc
Confidence 344666665411111 111 1111 134678888777766431 11
Q ss_pred --CHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 395 --SLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 395 --~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
-+|..-.+++.+.++|+..-...+...+|++|+.+.
T Consensus 687 tat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~ 724 (804)
T KOG0478|consen 687 TATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLL 724 (804)
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 245666666667777776677888899999988654
No 238
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.52 E-value=9.1e-08 Score=96.67 Aligned_cols=143 Identities=23% Similarity=0.298 Sum_probs=83.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCC--------------CeEEEEeccceeEeeccc-ccCCCCCChhHHhhh-hh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMA--------------PILVVATNRGITRIRGTN-YKSAHGIPMDLLDRL-LI 353 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~--------------~iiil~tn~~~~~~~~~~-~~~~~~l~~~llsR~-~~ 353 (466)
.||.+|||++.+..+....|..+||.-.. ..++.++|-..-++.... ....-.++++|++|| .+
T Consensus 122 ~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLi 201 (331)
T PF00493_consen 122 GGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLI 201 (331)
T ss_dssp TSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEE
T ss_pred CceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEE
Confidence 57999999999999999999999986321 124444442111111000 000135788999999 33
Q ss_pred hc-cCCCCHHH----------------------------------HHHHHHHHHhhcCCccCHHHHHHHHHhcCC-----
Q 012326 354 IS-TKPYTRDE----------------------------------IRKILDIRCQEEDVEMAEDAKQLLTRVGEG----- 393 (466)
Q Consensus 354 i~-~~pl~~~e----------------------------------l~~iL~~~~~~~~~~i~~~~l~~l~~~a~~----- 393 (466)
+. ..+++.+. +++++...-......+++++.++|......
T Consensus 202 f~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~ 281 (331)
T PF00493_consen 202 FLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKES 281 (331)
T ss_dssp ECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCH
T ss_pred EEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccc
Confidence 33 34454322 222222211133557899999999877521
Q ss_pred --------CCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHh
Q 012326 394 --------TSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLD 432 (466)
Q Consensus 394 --------g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~ 432 (466)
-.+|..-.+++.+.++|+.+-+..|+.+|+..|+.+|..
T Consensus 282 ~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~ 328 (331)
T PF00493_consen 282 KSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEE 328 (331)
T ss_dssp HCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHh
Confidence 134566678888888999899999999999999998854
No 239
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.50 E-value=2.1e-06 Score=92.90 Aligned_cols=143 Identities=25% Similarity=0.293 Sum_probs=89.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe--------------EEEEeccceeEeecccccCC---CCCChhHHhhh-
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI--------------LVVATNRGITRIRGTNYKSA---HGIPMDLLDRL- 351 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i--------------iil~tn~~~~~~~~~~~~~~---~~l~~~llsR~- 351 (466)
.||..|||.|.|+....++|..+||.-..++ ++.++|-..- ++....++ -.+|++|+|||
T Consensus 384 ~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~G--ryd~~~~~~enI~l~~~lLSRFD 461 (682)
T COG1241 384 GGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFG--RYDPKKTVAENINLPAPLLSRFD 461 (682)
T ss_pred CCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCC--cCCCCCCHHHhcCCChhHHhhCC
Confidence 6899999999999999999999998743222 2222331100 11122222 46789999999
Q ss_pred hhh-ccCCCCHHH----HHHHHHHH-------------------------------Hhhc-CCccCHHHHHHHHHhcCC-
Q 012326 352 LII-STKPYTRDE----IRKILDIR-------------------------------CQEE-DVEMAEDAKQLLTRVGEG- 393 (466)
Q Consensus 352 ~~i-~~~pl~~~e----l~~iL~~~-------------------------------~~~~-~~~i~~~~l~~l~~~a~~- 393 (466)
.++ -...++.+. ...++..+ |+.. .-.+++++.+.|.+...+
T Consensus 462 Lifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~ 541 (682)
T COG1241 462 LIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEM 541 (682)
T ss_pred eeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHh
Confidence 222 223333321 11222222 2221 237899999998877410
Q ss_pred --------------CCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHH
Q 012326 394 --------------TSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQ 434 (466)
Q Consensus 394 --------------g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~ 434 (466)
-..|++-.+++.+-++|..+=++.|+.+|+++|+.++...-
T Consensus 542 Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l 596 (682)
T COG1241 542 RKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSL 596 (682)
T ss_pred hhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHH
Confidence 12566777888888888877889999999999998775433
No 240
>PRK12377 putative replication protein; Provisional
Probab=98.48 E-value=2.2e-06 Score=82.92 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=39.4
Q ss_pred CCCCCCCcccccCCcC----CcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 28 GLDSSLEARDVSEGMV----GQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 28 ~~~~~~~p~~~~~~lv----G~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++...+....+ +... |+..+...+..+++.+..+ ..+++|+||||||||+||.++++.+.
T Consensus 63 ~i~~~~~~~tF-dnf~~~~~~~~~a~~~a~~~a~~~~~~---~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 63 GIQPLHRKCSF-ANYQVQNDGQRYALSQAKSIADELMTG---CTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CCCcccccCCc-CCcccCChhHHHHHHHHHHHHHHHHhc---CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44444433334 5543 4444555555555555432 36899999999999999999999884
No 241
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.47 E-value=4.5e-07 Score=79.77 Aligned_cols=46 Identities=35% Similarity=0.590 Sum_probs=32.6
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 43 VGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 43 vG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+|...+.+.+..-+..+.. ...+++|+|+|||||+++|+++...-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~---~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK---SSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC---SSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhC---CCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 4666666666555555543 236899999999999999999987654
No 242
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.44 E-value=1.5e-06 Score=91.80 Aligned_cols=116 Identities=23% Similarity=0.294 Sum_probs=81.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC--------CCe---EEEEeccceeEeecccccCCCCCChhHHhhh--hhhcc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM--------API---LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIST 356 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~--------~~i---iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~~ 356 (466)
.+.+|+|||..|+...++.|++++++.. .++ +|-+|++.... ......+-++|--|+ ++|++
T Consensus 408 gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~-----lv~~g~fredLyyrL~~~~i~l 482 (606)
T COG3284 408 GGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQ-----LVEQGRFREDLYYRLNAFVITL 482 (606)
T ss_pred CCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHH-----HHHcCCchHHHHHHhcCeeecc
Confidence 5799999999999999999999998742 122 44444431111 111256667888888 66778
Q ss_pred CCCCHH-----HHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 012326 357 KPYTRD-----EIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ 411 (466)
Q Consensus 357 ~pl~~~-----el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~ 411 (466)
+|+.+- -+..++.+... ....++++++..|....=.||+|...+.++.++.++.
T Consensus 483 P~lr~R~d~~~~l~~~~~~~~~-~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~ 541 (606)
T COG3284 483 PPLRERSDRIPLLDRILKREND-WRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSD 541 (606)
T ss_pred CchhcccccHHHHHHHHHHccC-CCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Confidence 876542 23333333222 3578999999999988756999999999999987773
No 243
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.44 E-value=9.3e-06 Score=83.42 Aligned_cols=140 Identities=19% Similarity=0.277 Sum_probs=97.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe--------------EEEEeccceeEeecccccCC---CCCChhHHhhhh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI--------------LVVATNRGITRIRGTNYKSA---HGIPMDLLDRLL 352 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i--------------iil~tn~~~~~~~~~~~~~~---~~l~~~llsR~~ 352 (466)
.||-.|||.|+|++..-.++..+||.-...+ ++-++|- ..=++....+| -.||.+|+|||-
T Consensus 440 ~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANP--ayGRYnprrs~e~NI~LPaALLSRFD 517 (721)
T KOG0482|consen 440 GGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANP--AYGRYNPRRSPEQNINLPAALLSRFD 517 (721)
T ss_pred CceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCc--cccccCcccChhHhcCCcHHHHHhhh
Confidence 5688899999999888888888887522111 2222221 00011111222 367899999982
Q ss_pred -------------------------------hhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhc----------
Q 012326 353 -------------------------------IISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVG---------- 391 (466)
Q Consensus 353 -------------------------------~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a---------- 391 (466)
...|.|++.+-++.++.. |+..+-.+++.+.++|....
T Consensus 518 ll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~-ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~ 596 (721)
T KOG0482|consen 518 LLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISL-AKRKNPVVPEALADYITGAYVELRREARSS 596 (721)
T ss_pred hhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHH-HhhcCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 233556777777777765 77777788888888887642
Q ss_pred ---CCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHh
Q 012326 392 ---EGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLD 432 (466)
Q Consensus 392 ---~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~ 432 (466)
...++|.++.+|+.+.++|+.+=...|..+||.+|+.+..=
T Consensus 597 ~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~ 640 (721)
T KOG0482|consen 597 KDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEM 640 (721)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHh
Confidence 13678999999999999999988899999999999987643
No 244
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.43 E-value=1.3e-06 Score=75.35 Aligned_cols=26 Identities=38% Similarity=0.753 Sum_probs=20.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+.++++||||+|||++++.+++.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 36889999999999999999998773
No 245
>PRK08116 hypothetical protein; Validated
Probab=98.43 E-value=1.7e-06 Score=84.90 Aligned_cols=44 Identities=34% Similarity=0.329 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 48 ARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 48 ~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+...+..+++.+......+.+++|+|+||||||+||.++++.+.
T Consensus 96 a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 96 AYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444444554443333346899999999999999999999874
No 246
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.41 E-value=7.8e-06 Score=79.30 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcC--------CCeEEEEeccceeEeeccccc
Q 012326 267 AEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEM--------APILVVATNRGITRIRGTNYK 338 (466)
Q Consensus 267 ~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~--------~~iiil~tn~~~~~~~~~~~~ 338 (466)
+..++.+...+.+-...-. ..++++||+|+|.+..+..|.-.++.+. ..+||+.+|.|.-
T Consensus 160 e~Yk~eL~~~v~~~v~~C~----rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~-------- 227 (344)
T KOG2170|consen 160 EDYKEELKNRVRGTVQACQ----RSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGS-------- 227 (344)
T ss_pred HHHHHHHHHHHHHHHHhcC----CceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcch--------
Confidence 3444444444434333333 6799999999999999999988887532 3568888886321
Q ss_pred CCCCCChhHHhhh-hhhccCCCCHHHHHHHHHHHHhhc---CC----ccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 012326 339 SAHGIPMDLLDRL-LIISTKPYTRDEIRKILDIRCQEE---DV----EMAEDAKQLLTRVGEGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 339 ~~~~l~~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~---~~----~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a 410 (466)
.+..-.++-. .-....+..-..+...|...+-++ |. .++...+++.+-+- -.+.|+....++....-
T Consensus 228 ---eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFL-PLek~hV~~C~r~el~~- 302 (344)
T KOG2170|consen 228 ---EIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFL-PLEKRHVRSCIRAELRK- 302 (344)
T ss_pred ---HHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcC-cccHHHHHHHHHHHHHh-
Confidence 1111111111 112223333334444444333222 22 34555555555544 37777777776654222
Q ss_pred hhhcCCccCHHHHHHHHHHHH
Q 012326 411 QKRKGKVVEVQDIDRVYRLFL 431 (466)
Q Consensus 411 ~~~~~~~It~~~v~~~~~~~~ 431 (466)
.+-..+.+-+++++....
T Consensus 303 ---rg~~~d~~~~erva~~l~ 320 (344)
T KOG2170|consen 303 ---RGLAPDQDFVERVANSLS 320 (344)
T ss_pred ---cccccchHHHHHHHHhhc
Confidence 224566666666665443
No 247
>PF13173 AAA_14: AAA domain
Probab=98.37 E-value=9.7e-07 Score=76.59 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=41.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-CCeEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-APILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEI 364 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el 364 (466)
..++||||+|.++ +....+....+... ..+++.+++.... .......+..|...+++.|++-.|.
T Consensus 62 ~~~i~iDEiq~~~-~~~~~lk~l~d~~~~~~ii~tgS~~~~l---------~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLP-DWEDALKFLVDNGPNIKIILTGSSSSLL---------SKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhc-cHHHHHHHHHHhccCceEEEEccchHHH---------hhcccccCCCeEEEEEECCCCHHHh
Confidence 4699999999995 45556666665542 2334334332000 1234456778888999999998774
No 248
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.34 E-value=1.9e-06 Score=78.86 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=32.5
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 42 MVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 42 lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
++|+++..+.+...++ ...+ ..+++++++|+||+|||+++++++..+..
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~-~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQS-GSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS------EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HHHc-CCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999877766 2222 23489999999999999999998877653
No 249
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.3e-05 Score=79.52 Aligned_cols=130 Identities=22% Similarity=0.288 Sum_probs=102.5
Q ss_pred cceeeeeccccc-----------cHHHHHHHHHHhhh-----cCCCe-EEEEeccceeEeecccccCCCCCChhHHh--h
Q 012326 290 PGVLFIDEVHML-----------DVECFSFLNRALEN-----EMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLD--R 350 (466)
Q Consensus 290 ~~vl~iDEi~~l-----------~~~~~~~L~~~le~-----~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~lls--R 350 (466)
++|+||||+|.+ +.+.|..|.+++.. +...+ +|++||+ +..|.|+|++ |
T Consensus 245 PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR------------~D~LDPALLRPGR 312 (406)
T COG1222 245 PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNR------------PDILDPALLRPGR 312 (406)
T ss_pred CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCC------------ccccChhhcCCCc
Confidence 899999999987 33778888888754 33456 9999999 8888899885 4
Q ss_pred h-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHH
Q 012326 351 L-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRL 429 (466)
Q Consensus 351 ~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~ 429 (466)
+ ..|+|+.++.+.-.+||+.++.+-++.=+- -++.|+....+.+.-.+-.++.-|.-+|..+.+..||.+|+.+|..-
T Consensus 313 ~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv-d~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 313 FDRKIEFPLPDEEGRAEILKIHTRKMNLADDV-DLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred ccceeecCCCCHHHHHHHHHHHhhhccCccCc-CHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 5 678999999999999999988866542221 16777777755566677788889999999999999999999998865
Q ss_pred HHh
Q 012326 430 FLD 432 (466)
Q Consensus 430 ~~~ 432 (466)
...
T Consensus 392 V~~ 394 (406)
T COG1222 392 VVK 394 (406)
T ss_pred HHh
Confidence 443
No 250
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.31 E-value=7.2e-06 Score=80.76 Aligned_cols=100 Identities=19% Similarity=0.227 Sum_probs=53.5
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-CCeEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-APILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.++++|+++... .+..+...+.... ..-+|++|.. ..+...+-.....+++.+++.++..+.+
T Consensus 102 ~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~-------------~~v~~~~~~~~~~~~l~~L~~~ea~~L~ 166 (287)
T PF00931_consen 102 RCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRD-------------RSVAGSLGGTDKVIELEPLSEEEALELF 166 (287)
T ss_dssp SEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESC-------------GGGGTTHHSCEEEEECSS--HHHHHHHH
T ss_pred cceeeeeeecccc--cccccccccccccccccccccccc-------------cccccccccccccccccccccccccccc
Confidence 4699999988764 2322332222212 2235555542 1222222222457889999999999999
Q ss_pred HHHHhhcC---CccCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012326 369 DIRCQEED---VEMAEDAKQLLTRVGEGTSLRYAIHLITAA 406 (466)
Q Consensus 369 ~~~~~~~~---~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a 406 (466)
...+.... ..-.++..+.|++.+ |+..-|+.++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~~c--~glPLal~~~a~~ 205 (287)
T PF00931_consen 167 KKRAGRKESESPEDLEDLAKEIVEKC--GGLPLALKLIASY 205 (287)
T ss_dssp HHHHTSHS----TTSCTHHHHHHHHT--TT-HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccc--ccccccccccccc
Confidence 98875443 122345677888887 5566777777543
No 251
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.30 E-value=2.5e-06 Score=73.14 Aligned_cols=74 Identities=30% Similarity=0.418 Sum_probs=51.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCC-ceEeeeccceeccc---------------CCHHHHHHHHHHHHHcccccC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLET-PFAMISGSEIFSLE---------------MSKTEALMQAFRKAIGVRIKE 129 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~-p~~~i~~~~~~~~e---------------~~~~~~l~~~~~~a~~~~~~~ 129 (466)
+.+++|+||||||||++++.++..+.... +++.+++....... ..........+..+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK--- 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC---
Confidence 47899999999999999999999998643 46666665443321 112224555555554432
Q ss_pred ceEEEEcceeeee
Q 012326 130 EAEVIEGEVVEVQ 142 (466)
Q Consensus 130 ~~ii~~dEid~~~ 142 (466)
+.+++.||+..+.
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 6999999999873
No 252
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.25 E-value=2.8e-05 Score=88.84 Aligned_cols=99 Identities=25% Similarity=0.386 Sum_probs=69.9
Q ss_pred eeeeeccccccHHHHHHHHHHhhhcC--------------CCeEEEEeccceeEeecccccCCCCCChhHHhhhhhhccC
Q 012326 292 VLFIDEVHMLDVECFSFLNRALENEM--------------APILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTK 357 (466)
Q Consensus 292 vl~iDEi~~l~~~~~~~L~~~le~~~--------------~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~ 357 (466)
-+++||.+..+.+++.+|++++.+.. ..+.+|+|.+......|. ..+..+|+.|+.-++|.
T Consensus 958 WIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGR-----K~LSrAFRNRFlE~hFd 1032 (4600)
T COG5271 958 WIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGR-----KGLSRAFRNRFLEMHFD 1032 (4600)
T ss_pred EEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccch-----HHHHHHHHhhhHhhhcc
Confidence 67899999999999999999997632 223455554311111111 35567999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHH
Q 012326 358 PYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAI 400 (466)
Q Consensus 358 pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai 400 (466)
..+++|+..||..+| ++.+.-+..|++...+-+.|.-+
T Consensus 1033 dipedEle~ILh~rc-----~iapSyakKiVeVyr~Ls~rRs~ 1070 (4600)
T COG5271 1033 DIPEDELEEILHGRC-----EIAPSYAKKIVEVYRGLSSRRSI 1070 (4600)
T ss_pred cCcHHHHHHHHhccC-----ccCHHHHHHHHHHHHHhhhhhhH
Confidence 999999999999865 47777777777765334444433
No 253
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.22 E-value=4.7e-06 Score=80.41 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=62.1
Q ss_pred cccCCCCCCCCCcccccCCcC-CcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCC-CCceEeee
Q 012326 23 HIRGLGLDSSLEARDVSEGMV-GQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGL-ETPFAMIS 100 (466)
Q Consensus 23 ~~~~~~~~~~~~p~~~~~~lv-G~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~-~~p~~~i~ 100 (466)
..+..++.+.+++..+ ++.. +.+..+.++..+.....+-.....+++|+|+||||||+++.++++++.. ...+..+.
T Consensus 56 ~~~~s~i~~~~~~~tF-dnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 56 TFNRSGIRPLHQNCSF-ENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred HHHHcCCCccccCCcc-ccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3345566677776666 5554 4334333444433333321111258999999999999999999998843 23344444
Q ss_pred ccceecccCC---H-HHHHHHHHHHHHcccccCceEEEEcceeee
Q 012326 101 GSEIFSLEMS---K-TEALMQAFRKAIGVRIKEEAEVIEGEVVEV 141 (466)
Q Consensus 101 ~~~~~~~e~~---~-~~~l~~~~~~a~~~~~~~~~ii~~dEid~~ 141 (466)
..++.+.-.. . .....+++.. +....+|++||+...
T Consensus 135 ~~~l~~~l~~~~~~~~~~~~~~l~~-----l~~~dlLvIDDig~~ 174 (244)
T PRK07952 135 VADIMSAMKDTFSNSETSEEQLLND-----LSNVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHH-----hccCCEEEEeCCCCC
Confidence 4443321100 0 0011222222 235788999998775
No 254
>PHA00729 NTP-binding motif containing protein
Probab=98.19 E-value=8.7e-06 Score=77.13 Aligned_cols=31 Identities=10% Similarity=0.015 Sum_probs=26.7
Q ss_pred CCCChhHHhhhhhhccCCCCHHHHHHHHHHH
Q 012326 341 HGIPMDLLDRLLIISTKPYTRDEIRKILDIR 371 (466)
Q Consensus 341 ~~l~~~llsR~~~i~~~pl~~~el~~iL~~~ 371 (466)
+.+.+.+++||..+.|.+++.+++...|..+
T Consensus 109 f~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 109 YKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred HHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 3567889999999999999999999988763
No 255
>PRK06921 hypothetical protein; Provisional
Probab=98.18 E-value=3.2e-05 Score=75.77 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=23.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.+++|+||||+|||+|+.++|+++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 47899999999999999999999874
No 256
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=98.14 E-value=2.4e-05 Score=77.70 Aligned_cols=126 Identities=14% Similarity=0.133 Sum_probs=98.5
Q ss_pred cceeeeeccccccH-HHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHH--hhhhhhccCCCCHHHHH
Q 012326 290 PGVLFIDEVHMLDV-ECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLL--DRLLIISTKPYTRDEIR 365 (466)
Q Consensus 290 ~~vl~iDEi~~l~~-~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~ll--sR~~~i~~~pl~~~el~ 365 (466)
+.+++|++++.+.. .....|.+.+++++..+ +|++++... ....+...+. ++|.++.+.+++..++.
T Consensus 47 ~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~---------~~~~~~k~~~~~~~~~~i~~~~~~~~~~~ 117 (302)
T TIGR01128 47 RRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLD---------KRKKLTKWLKALKNAQIVECKTPKEQELP 117 (302)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCC---------HhHHHHHHHHHhcCeeEEEecCCCHHHHH
Confidence 46999999999863 56788999998876655 555554200 0011112222 48999999999999999
Q ss_pred HHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 366 KILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 366 ~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
.++...++..|+.+++++++++++.. +||++.+.+.++..+.++ +.+.||.++|+....
T Consensus 118 ~~i~~~~~~~g~~i~~~a~~~l~~~~-~~d~~~l~~el~KL~~~~---~~~~It~e~I~~~~~ 176 (302)
T TIGR01128 118 RWIQARLKKLGLRIDPDAVQLLAELV-EGNLLAIAQELEKLALYA---PDGKITLEDVEEAVS 176 (302)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHh-CcHHHHHHHHHHHHHhhC---CCCCCCHHHHHHHHh
Confidence 99999999999999999999999998 599999999999987765 334699999988765
No 257
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00013 Score=75.72 Aligned_cols=44 Identities=39% Similarity=0.553 Sum_probs=33.8
Q ss_pred HHHHHc-CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeec
Q 012326 56 LQMIKE-GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISG 101 (466)
Q Consensus 56 l~~l~~-~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~ 101 (466)
++.++. .+.+-..+||.||||+|||+||-.+|..-+ .||+++-.
T Consensus 527 v~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~--FPFvKiiS 571 (744)
T KOG0741|consen 527 VQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSD--FPFVKIIS 571 (744)
T ss_pred HHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcC--CCeEEEeC
Confidence 444443 334457899999999999999999998776 88886643
No 258
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.03 E-value=9.2e-06 Score=69.65 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=40.6
Q ss_pred CCcCCcHHHHHHHHHHHHHHHcCCCCCceEE--EecCCCCChHHHHHHHHHHc
Q 012326 40 EGMVGQLPARKAAGVILQMIKEGKIAGRAVL--IAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iL--L~GppGtGKT~lA~~ia~~l 90 (466)
..|.||.-+.+.+..++...-....|.++++ |.|+||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 6789999999988766665444344556655 78999999999999999986
No 259
>PRK06526 transposase; Provisional
Probab=98.00 E-value=1.4e-05 Score=77.65 Aligned_cols=25 Identities=40% Similarity=0.703 Sum_probs=23.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHc
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+++++|+||||||||++|.+++.++
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4799999999999999999999876
No 260
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.98 E-value=0.00028 Score=70.80 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=46.6
Q ss_pred CCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 40 EGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
..+.+++.+.+.+..++-.-. ... |.+++|+|-.|||||.+.+.+.+.++ .|++.+++.+++.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~-~~~-PS~~~iyG~sgTGKT~~~r~~l~~~n--~~~vw~n~~ecft 68 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNS-CTI-PSIVHIYGHSGTGKTYLVRQLLRKLN--LENVWLNCVECFT 68 (438)
T ss_pred cCccchHHHHHHHHHHhCCCC-ccc-ceeEEEeccCCCchhHHHHHHHhhcC--CcceeeehHHhcc
Confidence 467788888777755432111 122 47789999999999999999999996 6777778876655
No 261
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.97 E-value=0.00037 Score=73.79 Aligned_cols=136 Identities=19% Similarity=0.337 Sum_probs=88.2
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe--------------EEEEeccceeEeecc-----cccCCCCCChhHHhh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI--------------LVVATNRGITRIRGT-----NYKSAHGIPMDLLDR 350 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i--------------iil~tn~~~~~~~~~-----~~~~~~~l~~~llsR 350 (466)
.||=.|||.|+|+...+.+|..+||.-...+ ++-++|- +.|. +...--.+..+++||
T Consensus 443 nGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANP----v~GhYdR~ktl~eNi~msApimSR 518 (764)
T KOG0480|consen 443 NGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANP----VGGHYDRKKTLRENINMSAPIMSR 518 (764)
T ss_pred CceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCC----cCCccccccchhhhcCCCchhhhh
Confidence 5788999999999989999999998632111 2233331 1111 111112445788888
Q ss_pred h--hhhccC-----------------------------CCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcC-------
Q 012326 351 L--LIISTK-----------------------------PYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGE------- 392 (466)
Q Consensus 351 ~--~~i~~~-----------------------------pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~------- 392 (466)
| +.+-+. +|+.++++..|.. ++...-.++.++.+.|.+...
T Consensus 519 FDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~y-AR~~~P~ls~ea~~~lve~Y~~lR~~~~ 597 (764)
T KOG0480|consen 519 FDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRY-ARNFKPKLSKEASEMLVEKYKGLRQRDA 597 (764)
T ss_pred hcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHH-HHhcCccccHHHHHHHHHHHHHHHHhhc
Confidence 7 222222 5666677776665 334445678888888877631
Q ss_pred C--------CCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 393 G--------TSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 393 ~--------g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
. =..|.+-.+++.+-+.|+.+-.+.||++|+.+++.+.
T Consensus 598 ~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 598 QGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred cccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 1 1356777777777777877788999999999999876
No 262
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.92 E-value=4.9e-05 Score=86.95 Aligned_cols=77 Identities=22% Similarity=0.379 Sum_probs=52.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC--------------CCeEEEEeccceeEeecccccCCCCCChhHHhhhhhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM--------------APILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~--------------~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~ 355 (466)
.+-+++||++..+..++.-|+..+.... ..+-+|++.+...+-+| -.++|..|+.|+-++.
T Consensus 1612 G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggG-----RKgLPkSF~nRFsvV~ 1686 (4600)
T COG5271 1612 GGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGG-----RKGLPKSFLNRFSVVK 1686 (4600)
T ss_pred CCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCC-----cccCCHHHhhhhheEE
Confidence 3578899999988877777776665321 12234444321111111 1589999999999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 012326 356 TKPYTRDEIRKILDIR 371 (466)
Q Consensus 356 ~~pl~~~el~~iL~~~ 371 (466)
+..|+.+++..|+...
T Consensus 1687 ~d~lt~dDi~~Ia~~~ 1702 (4600)
T COG5271 1687 MDGLTTDDITHIANKM 1702 (4600)
T ss_pred ecccccchHHHHHHhh
Confidence 9999999999888764
No 263
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.91 E-value=1.6e-05 Score=79.35 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=24.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+++++|+||||||||++|.++|+++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999884
No 264
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.90 E-value=0.00032 Score=62.48 Aligned_cols=26 Identities=35% Similarity=0.690 Sum_probs=23.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
..++++|+||+||||++..++..+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 67899999999999999999988864
No 265
>PRK10536 hypothetical protein; Provisional
Probab=97.90 E-value=0.00016 Score=69.84 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=33.1
Q ss_pred cccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHH
Q 012326 37 DVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 37 ~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
..+..+.++......+.. .+.. ...++++||+|||||++|.+++..
T Consensus 52 ~~~~~i~p~n~~Q~~~l~---al~~----~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLK---AIES----KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHH---HHhc----CCeEEEECCCCCCHHHHHHHHHHH
Confidence 334567777766665533 3332 258899999999999999999985
No 266
>PF05729 NACHT: NACHT domain
Probab=97.87 E-value=0.00019 Score=64.07 Aligned_cols=26 Identities=35% Similarity=0.696 Sum_probs=22.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
+.++|+|+||+|||++++.++..+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh
Confidence 46889999999999999999987764
No 267
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.84 E-value=0.0025 Score=63.87 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=53.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC--CCe-EEEEeccceeEeeccc-ccC--CCCCChhHHhhh--hhhccCCCCH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM--API-LVVATNRGITRIRGTN-YKS--AHGIPMDLLDRL--LIISTKPYTR 361 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~--~~i-iil~tn~~~~~~~~~~-~~~--~~~l~~~llsR~--~~i~~~pl~~ 361 (466)
+-|++||+.|+++++....+++.+..-. .++ +|++.+.....-.... +.. .......+++++ ..+.+++++.
T Consensus 173 ~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~~ 252 (325)
T PF07693_consen 173 RIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPSP 252 (325)
T ss_pred eEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCCH
Confidence 5699999999998876666555554322 344 6677665221100000 000 012346788998 4577899999
Q ss_pred HHHHHHHHHHHhhc
Q 012326 362 DEIRKILDIRCQEE 375 (466)
Q Consensus 362 ~el~~iL~~~~~~~ 375 (466)
.++...+....+..
T Consensus 253 ~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 253 SDLERYLNELLESL 266 (325)
T ss_pred HHHHHHHHHHHHHh
Confidence 99998888765433
No 268
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=97.81 E-value=0.0002 Score=74.90 Aligned_cols=66 Identities=26% Similarity=0.429 Sum_probs=50.9
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
+.+..|..++..+++.|+||+|||+++..+|..+... .-....++++|++..+.+.+++....++.
T Consensus 185 D~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~----~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~ 250 (421)
T TIGR03600 185 DRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR----EGKPVLFFSLEMSAEQLGERLLASKSGIN 250 (421)
T ss_pred HHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4445588888999999999999999999999655311 01235688999999999999998776653
No 269
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.81 E-value=3.8e-05 Score=81.43 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=48.3
Q ss_pred cccCCcCCcHHHHHHHHHHHHH-HHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeec
Q 012326 37 DVSEGMVGQLPARKAAGVILQM-IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISG 101 (466)
Q Consensus 37 ~~~~~lvG~~~~k~~l~~~l~~-l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~ 101 (466)
.+|+|+.|++++++++-..+.. ..+.....+.++|.||||+|||+||+.+++.+... |...+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~-~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV-PIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC-cceeecC
Confidence 3468999999999988655522 23333345788899999999999999999988763 6665555
No 270
>PHA02624 large T antigen; Provisional
Probab=97.80 E-value=0.00021 Score=76.30 Aligned_cols=41 Identities=29% Similarity=0.321 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 51 AAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 51 ~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+..++..+..|.+..+.++|+||||||||+++.++++.++
T Consensus 416 ~~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~ 456 (647)
T PHA02624 416 VIYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCG 456 (647)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34444566667777778999999999999999999999994
No 271
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.79 E-value=0.00023 Score=69.92 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=24.2
Q ss_pred CCChhHHhhhhhhccCCCCHHHHHHHHHHHHhh
Q 012326 342 GIPMDLLDRLLIISTKPYTRDEIRKILDIRCQE 374 (466)
Q Consensus 342 ~l~~~llsR~~~i~~~pl~~~el~~iL~~~~~~ 374 (466)
.+++.|++++.++.+.+++.+++..|.......
T Consensus 163 ~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 163 PISPRFLRHFNILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp SHHHHHHTTEEEEE----TCCHHHHHHHHHHHH
T ss_pred CCChHHhhheEEEEecCCChHHHHHHHHHHHhh
Confidence 467788888999999999999999998877653
No 272
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.79 E-value=0.002 Score=73.76 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=60.8
Q ss_pred cceeeeeccccccHHHHH-HHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCC-hhHH--hhhhhhccC--CCCHH
Q 012326 290 PGVLFIDEVHMLDVECFS-FLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIP-MDLL--DRLLIISTK--PYTRD 362 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~-~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~-~~ll--sR~~~i~~~--pl~~~ 362 (466)
+.+++||++|.++..... .|..++...+... +|+++.. . | .++ ..+. ..+..+... +++.+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~----------~-~-~~~~~~l~~~~~~~~l~~~~l~f~~~ 189 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN----------L-P-PLGIANLRVRDQLLEIGSQQLAFDHQ 189 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC----------C-C-CCchHhHHhcCcceecCHHhCCCCHH
Confidence 679999999999755433 5555555544434 5555532 0 1 121 1222 223334333 89999
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHH
Q 012326 363 EIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLIT 404 (466)
Q Consensus 363 el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~ 404 (466)
|....+...+ +..++++.+..|.+.+ +|.+- ++.++-
T Consensus 190 e~~~ll~~~~---~~~~~~~~~~~l~~~t-~Gwp~-~l~l~~ 226 (903)
T PRK04841 190 EAQQFFDQRL---SSPIEAAESSRLCDDV-EGWAT-ALQLIA 226 (903)
T ss_pred HHHHHHHhcc---CCCCCHHHHHHHHHHh-CChHH-HHHHHH
Confidence 9999887543 5678999999999998 47764 444443
No 273
>PRK06321 replicative DNA helicase; Provisional
Probab=97.73 E-value=0.00036 Score=73.83 Aligned_cols=66 Identities=26% Similarity=0.383 Sum_probs=51.0
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGV 125 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~ 125 (466)
++.+..|..++..++|.|.||+|||++|..+|..+... .-....++|+||+..+.+.++++...++
T Consensus 216 LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~----~g~~v~~fSLEMs~~ql~~Rlla~~s~v 281 (472)
T PRK06321 216 LDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQ----NRLPVGIFSLEMTVDQLIHRIICSRSEV 281 (472)
T ss_pred HHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh----cCCeEEEEeccCCHHHHHHHHHHhhcCC
Confidence 45556688888899999999999999999998865210 0123568999999999999988765554
No 274
>PRK05636 replicative DNA helicase; Provisional
Probab=97.72 E-value=0.00017 Score=76.90 Aligned_cols=66 Identities=33% Similarity=0.577 Sum_probs=50.8
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
+.+.+|..++..+++.|+||+|||+||..+|..+... .-....++|+||+..+.+.++++...++.
T Consensus 256 D~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~----~g~~v~~fSlEMs~~ql~~R~ls~~s~v~ 321 (505)
T PRK05636 256 DDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIK----HNKASVIFSLEMSKSEIVMRLLSAEAEVR 321 (505)
T ss_pred hhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEEeeCCHHHHHHHHHHHhcCCC
Confidence 4455688888899999999999999999988754311 01234688999999999999998776654
No 275
>PRK08760 replicative DNA helicase; Provisional
Probab=97.72 E-value=0.00024 Score=75.35 Aligned_cols=65 Identities=23% Similarity=0.418 Sum_probs=50.2
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcc
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGV 125 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~ 125 (466)
+.+..|..++..++|.|+||+|||++|..+|...... .-....++++||+..+.+.++++...++
T Consensus 220 D~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~----~g~~V~~fSlEMs~~ql~~Rl~a~~s~i 284 (476)
T PRK08760 220 DAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIK----SKKGVAVFSMEMSASQLAMRLISSNGRI 284 (476)
T ss_pred HHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh----cCCceEEEeccCCHHHHHHHHHHhhCCC
Confidence 4456688888899999999999999999999765311 0123568999999999999888765544
No 276
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.71 E-value=0.005 Score=63.52 Aligned_cols=88 Identities=10% Similarity=0.030 Sum_probs=48.6
Q ss_pred hHHhhhhh----hccCCCCHH-----------HHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 012326 346 DLLDRLLI----ISTKPYTRD-----------EIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 346 ~llsR~~~----i~~~pl~~~-----------el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a 410 (466)
+|++|+.- ..++.+.++ -+.++|....+ ..+++ +++...++..+-+.|.....-..+..+.
T Consensus 337 AflDRiH~yiPGWeipk~~~e~~t~~yGl~~DylsE~l~~lR~---~~~~~-~~~~~~~l~~~~~~RD~~aV~kt~Sgll 412 (449)
T TIGR02688 337 AFLDRIHGYLPGWEIPKIRKEMFSNGYGFVVDYFAEALRELRE---REYAD-IVDRHFSLSPNLNTRDVIAVKKTFSGLM 412 (449)
T ss_pred HHHHhhhccCCCCcCccCCHHHcccCCcchHHHHHHHHHHHHh---hHHHH-hhhhheecCCCcchhhHHHHHHHHHHHH
Confidence 68888731 234444442 34445444322 23332 3444444443345565554444444343
Q ss_pred hh-hcCCccCHHHHHHHHHHHHhHHHHH
Q 012326 411 QK-RKGKVVEVQDIDRVYRLFLDVQRST 437 (466)
Q Consensus 411 ~~-~~~~~It~~~v~~~~~~~~~~~~~~ 437 (466)
.. -....+|.++++.+....+..++.+
T Consensus 413 KLL~P~~~~~~ee~~~~l~~Ale~RrrV 440 (449)
T TIGR02688 413 KILFPHGTITKEEFTECLEPALEGRQRV 440 (449)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 32 3456799999999998888877655
No 277
>PRK09165 replicative DNA helicase; Provisional
Probab=97.70 E-value=0.00034 Score=74.60 Aligned_cols=70 Identities=24% Similarity=0.281 Sum_probs=50.7
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCC-----ceE-----eeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLET-----PFA-----MISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~-----p~~-----~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
+.+.+|..++..+++.|+||+|||++|..+|....... |+. .-...-++++||+..+.+.++++...++.
T Consensus 208 D~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~ 287 (497)
T PRK09165 208 DSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEIS 287 (497)
T ss_pred hhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCC
Confidence 44456888888899999999999999988876552110 000 01235689999999999999988766653
No 278
>PRK08181 transposase; Validated
Probab=97.69 E-value=0.0001 Score=72.21 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=40.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCC-CCceEeeeccceeccc-CCHH-HHHHHHHHHHHcccccCceEEEEcceeee
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGL-ETPFAMISGSEIFSLE-MSKT-EALMQAFRKAIGVRIKEEAEVIEGEVVEV 141 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~-~~p~~~i~~~~~~~~e-~~~~-~~l~~~~~~a~~~~~~~~~ii~~dEid~~ 141 (466)
+.+++|+||||||||++|.++++++.. ......+...++...- .... ....+.+.. +..+.++++||+...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~-----l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK-----LDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH-----HhcCCEEEEeccccc
Confidence 478999999999999999999986532 2223333333222210 0000 011222221 225789999998765
No 279
>PRK08506 replicative DNA helicase; Provisional
Probab=97.66 E-value=0.0005 Score=72.91 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=51.6
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
+.+.+|..++..+++.|+||+|||++|..+|..+.. .-....++|+||+..+.+.++++...++.
T Consensus 183 D~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~-----~g~~V~~fSlEMs~~ql~~Rlla~~s~v~ 247 (472)
T PRK08506 183 NKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALN-----QDKGVAFFSLEMPAEQLMLRMLSAKTSIP 247 (472)
T ss_pred HhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHh-----cCCcEEEEeCcCCHHHHHHHHHHHhcCCC
Confidence 334568888889999999999999999999976631 11335689999999999999998776654
No 280
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=97.66 E-value=0.00063 Score=66.29 Aligned_cols=67 Identities=34% Similarity=0.425 Sum_probs=51.4
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
++.+.+|..++..++|.|+||+|||++|..+|..+.... -.+.-++++|++..+...++++...++.
T Consensus 9 LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~----~~~vly~SlEm~~~~l~~R~la~~s~v~ 75 (259)
T PF03796_consen 9 LDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG----GYPVLYFSLEMSEEELAARLLARLSGVP 75 (259)
T ss_dssp HHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT----SSEEEEEESSS-HHHHHHHHHHHHHTST
T ss_pred HHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhhcch
Confidence 555667888888999999999999999999998664311 1346688999999999999999888764
No 281
>PF14516 AAA_35: AAA-like domain
Probab=97.64 E-value=0.0076 Score=61.00 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=35.7
Q ss_pred hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012326 352 LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITA 405 (466)
Q Consensus 352 ~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~ 405 (466)
..+.+.+.+.+|+...++.. +..++++.++.+...+ |+..++++.+-.
T Consensus 194 ~~i~L~~Ft~~ev~~L~~~~----~~~~~~~~~~~l~~~t--gGhP~Lv~~~~~ 241 (331)
T PF14516_consen 194 QPIELPDFTPEEVQELAQRY----GLEFSQEQLEQLMDWT--GGHPYLVQKACY 241 (331)
T ss_pred cceeCCCCCHHHHHHHHHhh----hccCCHHHHHHHHHHH--CCCHHHHHHHHH
Confidence 55778999999988876653 6678888899999998 445566655433
No 282
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.63 E-value=0.0061 Score=64.68 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=36.6
Q ss_pred CCcCCcHHHHHHHHHHHHHHHc------C---CCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 40 EGMVGQLPARKAAGVILQMIKE------G---KIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~l~~------~---~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
-.|.|+..+|.++... ++.+ + ....-++||.|.|||||+-+.+.+++..
T Consensus 449 PsIyGh~~VK~AvAla--LfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s 506 (854)
T KOG0477|consen 449 PSIYGHEDVKRAVALA--LFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS 506 (854)
T ss_pred chhhchHHHHHHHHHH--HhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcC
Confidence 4689999999988533 3322 1 1124689999999999999999988755
No 283
>PRK08006 replicative DNA helicase; Provisional
Probab=97.60 E-value=0.00044 Score=73.12 Aligned_cols=67 Identities=25% Similarity=0.365 Sum_probs=51.9
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
++.+.+|..++..++|.|.||+|||++|..+|..+... .-....++|+||+..+.+.++++...++.
T Consensus 214 LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~----~g~~V~~fSlEM~~~ql~~Rlla~~~~v~ 280 (471)
T PRK08006 214 LNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML----QDKPVLIFSLEMPGEQIMMRMLASLSRVD 280 (471)
T ss_pred HHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh----cCCeEEEEeccCCHHHHHHHHHHHhcCCC
Confidence 34455688888999999999999999999998765310 11235689999999999999998766653
No 284
>PRK07004 replicative DNA helicase; Provisional
Probab=97.60 E-value=0.0004 Score=73.35 Aligned_cols=64 Identities=27% Similarity=0.449 Sum_probs=49.0
Q ss_pred HHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcc
Q 012326 58 MIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGV 125 (466)
Q Consensus 58 ~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~ 125 (466)
.+.+|..++..+++.|.||+|||++|..+|..+... .-....++|+||+..+.+.+++....++
T Consensus 205 ~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~----~~~~v~~fSlEM~~~ql~~R~la~~~~v 268 (460)
T PRK07004 205 RMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE----YGLPVAVFSMEMPGTQLAMRMLGSVGRL 268 (460)
T ss_pred ccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH----cCCeEEEEeCCCCHHHHHHHHHHhhcCC
Confidence 344578888999999999999999999998754210 0123568899999999999998765554
No 285
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.59 E-value=0.00096 Score=63.92 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=27.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSE 103 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~ 103 (466)
.+-.++||+|||||.+++.+|+.+| .+++..+|++
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG--~~~~vfnc~~ 67 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALG--RFVVVFNCSE 67 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT----EEEEETTS
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhC--CeEEEecccc
Confidence 4567899999999999999999999 5666666644
No 286
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.59 E-value=6e-05 Score=64.16 Aligned_cols=23 Identities=43% Similarity=0.938 Sum_probs=22.0
Q ss_pred EEEecCCCCChHHHHHHHHHHcC
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++|.||||+||||+|+.+|+.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999997
No 287
>PRK05748 replicative DNA helicase; Provisional
Probab=97.57 E-value=0.00068 Score=71.49 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=48.6
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHc
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIG 124 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~ 124 (466)
+.+..|..++..+++.|+||+|||+++..+|...... .-....++++|++..+.+.+++....+
T Consensus 194 D~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~----~g~~v~~fSlEms~~~l~~R~l~~~~~ 257 (448)
T PRK05748 194 DKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATK----TDKNVAIFSLEMGAESLVMRMLCAEGN 257 (448)
T ss_pred HHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh----CCCeEEEEeCCCCHHHHHHHHHHHhcC
Confidence 3345588888899999999999999999998764210 012356889999999998888865444
No 288
>PRK06749 replicative DNA helicase; Provisional
Probab=97.57 E-value=0.00071 Score=70.81 Aligned_cols=65 Identities=28% Similarity=0.331 Sum_probs=51.8
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGV 125 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~ 125 (466)
++.+.+|..++..+++.|.||+|||+++..+|..+... -....++|+||+..+.+.+++....++
T Consensus 176 LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~-----g~~v~~fSlEMs~~ql~~R~ls~~~~i 240 (428)
T PRK06749 176 LNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKS-----GAAVGLFSLEMSSKQLLKRMASCVGEV 240 (428)
T ss_pred HHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhc-----CCCEEEEEeeCCHHHHHHHHHHhccCC
Confidence 34456788888899999999999999999998876421 133568999999999999988876554
No 289
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=97.57 E-value=0.00069 Score=71.13 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=50.1
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
+.+.+|..++..+++.|+||+|||+++..+|..+... .-....++++|++..+.+.+++....++.
T Consensus 186 D~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~----~g~~vl~~SlEm~~~~i~~R~~~~~~~v~ 251 (434)
T TIGR00665 186 DKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIK----EGKPVAFFSLEMSAEQLAMRMLSSESRVD 251 (434)
T ss_pred HhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHh----CCCeEEEEeCcCCHHHHHHHHHHHhcCCC
Confidence 3344578888899999999999999999998764310 01235688999999999999887766543
No 290
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.56 E-value=0.0049 Score=64.93 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=50.9
Q ss_pred CCccCHHHHHHHHHhcC----C-----------CCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHH--HHhHHHHHH
Q 012326 376 DVEMAEDAKQLLTRVGE----G-----------TSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRL--FLDVQRSTQ 438 (466)
Q Consensus 376 ~~~i~~~~l~~l~~~a~----~-----------g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~--~~~~~~~~~ 438 (466)
.-.+++++.++|++... . -.+|.+-.+++.+-++|..+=.+.|+.+|.+.|..+ |.-++..++
T Consensus 573 ~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~fA~f~e~v~ 652 (818)
T KOG0479|consen 573 KPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLLRFALFKEKVK 652 (818)
T ss_pred CccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHHHHHHHhhhcc
Confidence 34789999999998641 0 124666677777777887777889999999999874 333443333
Q ss_pred HHHHHH-HHHHhhhhhccC
Q 012326 439 YLMEYQ-SQYINEVTIEAD 456 (466)
Q Consensus 439 ~~~~~~-~~~~~~~~~~~~ 456 (466)
--..++ +++......+.+
T Consensus 653 ~~~~~~k~~r~~~~~~~d~ 671 (818)
T KOG0479|consen 653 PKDDKEKKKREEASDAEDE 671 (818)
T ss_pred ccccHHHHhhhhhcccccc
Confidence 333333 444444444333
No 291
>PRK06904 replicative DNA helicase; Validated
Probab=97.55 E-value=0.00073 Score=71.55 Aligned_cols=66 Identities=23% Similarity=0.368 Sum_probs=50.8
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
+.+.+|..++..+++.|.||+|||++|..+|..+... .-....++|+||+..+.+.++++...++.
T Consensus 212 D~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~----~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~ 277 (472)
T PRK06904 212 DKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA----SEKPVLVFSLEMPAEQIMMRMLASLSRVD 277 (472)
T ss_pred HHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh----cCCeEEEEeccCCHHHHHHHHHHhhCCCC
Confidence 4445688888999999999999999998888755210 01235689999999999999998766543
No 292
>PRK05595 replicative DNA helicase; Provisional
Probab=97.53 E-value=0.00051 Score=72.33 Aligned_cols=66 Identities=32% Similarity=0.409 Sum_probs=50.7
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
+.+.+|..++..+++.|+||+|||++|..+|..+... .-....++++||+..+.+.+++....++.
T Consensus 192 d~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~----~g~~vl~fSlEms~~~l~~R~~a~~~~v~ 257 (444)
T PRK05595 192 DAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALR----EGKSVAIFSLEMSKEQLAYKLLCSEANVD 257 (444)
T ss_pred HHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHH----cCCcEEEEecCCCHHHHHHHHHHHhcCCC
Confidence 3345678888889999999999999999998754210 01235688999999999999998877654
No 293
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.52 E-value=0.00058 Score=66.21 Aligned_cols=132 Identities=15% Similarity=0.189 Sum_probs=73.9
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-CCeEEEEeccc---eeEeeccc------ccCCCCCChhHHhhhhhhccCCC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-APILVVATNRG---ITRIRGTN------YKSAHGIPMDLLDRLLIISTKPY 359 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-~~iiil~tn~~---~~~~~~~~------~~~~~~l~~~llsR~~~i~~~pl 359 (466)
.+++|+||+..+..+-+..|++++|+.. .|+ .+.+. .++++.-+ ......+.++|.-|....+|.-+
T Consensus 283 ggmlfldeigelgadeqamllkaieekrf~pf---gsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lp 359 (531)
T COG4650 283 GGMLFLDEIGELGADEQAMLLKAIEEKRFYPF---GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLP 359 (531)
T ss_pred CceEehHhhhhcCccHHHHHHHHHHhhccCCC---CCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeecc
Confidence 5799999999999999999999998743 222 11111 11111111 11113344556666644444333
Q ss_pred CHHH--------HHHHHHHHHhhc--CCccCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHhhhcCCccCHHHH
Q 012326 360 TRDE--------IRKILDIRCQEE--DVEMAEDAKQLLTRVGE------GTSLRYAIHLITAAALASQKRKGKVVEVQDI 423 (466)
Q Consensus 360 ~~~e--------l~~iL~~~~~~~--~~~i~~~~l~~l~~~a~------~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v 423 (466)
...+ +---|..++..- .+.+..++-..-..++. .|+.|..-.-+...+.+| ....||.+-|
T Consensus 360 gl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatla---d~grit~~~v 436 (531)
T COG4650 360 GLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLA---DSGRITLDVV 436 (531)
T ss_pred ccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHh---cCCceeHHHH
Confidence 2211 111233333333 46677777766555542 388888766666666665 4667887776
Q ss_pred HHHH
Q 012326 424 DRVY 427 (466)
Q Consensus 424 ~~~~ 427 (466)
+.-+
T Consensus 437 e~ei 440 (531)
T COG4650 437 EDEI 440 (531)
T ss_pred HHHH
Confidence 6544
No 294
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.52 E-value=0.0026 Score=74.90 Aligned_cols=54 Identities=28% Similarity=0.244 Sum_probs=41.2
Q ss_pred cccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 35 ARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 35 p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
|...+++++|.+...+.+..++. -+....+.+-|+||+|+||||+|+++++.+.
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~---l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLH---LESEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHc---cccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 33445889999988888765543 2233457888999999999999999988764
No 295
>PRK08840 replicative DNA helicase; Provisional
Probab=97.51 E-value=0.00088 Score=70.76 Aligned_cols=66 Identities=26% Similarity=0.403 Sum_probs=51.2
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGV 125 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~ 125 (466)
++.+.+|..++..+++.|.||+|||++|..+|..+... .-....++|+||+..+.+.++++...++
T Consensus 207 LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~----~~~~v~~fSlEMs~~ql~~Rlla~~s~v 272 (464)
T PRK08840 207 LNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD----QDKPVLIFSLEMPAEQLMMRMLASLSRV 272 (464)
T ss_pred HHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh----CCCeEEEEeccCCHHHHHHHHHHhhCCC
Confidence 34456688888999999999999999998888765311 0123568999999999999999876654
No 296
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.51 E-value=0.0039 Score=62.74 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=45.6
Q ss_pred CCcCCcHHHHHHHHHHHHHHHcCCC-CCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecc
Q 012326 40 EGMVGQLPARKAAGVILQMIKEGKI-AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGS 102 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~l~~~~~-~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~ 102 (466)
+++.|.++...++-..+.....|.- ..+.++|.||+|+|||++++.+-+.+... |...+.++
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y-~~Y~l~~~ 123 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY-PIYTLKGC 123 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE-EEEEecCC
Confidence 4899999998887555554433332 35788899999999999999999988753 55544333
No 297
>PRK08118 topology modulation protein; Reviewed
Probab=97.48 E-value=0.00028 Score=64.15 Aligned_cols=32 Identities=22% Similarity=0.576 Sum_probs=27.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceEeee
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMIS 100 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~ 100 (466)
+.+++.||||+||||+|+.+++.++ .|++.++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~--~~~~~lD 33 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN--IPVHHLD 33 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC--CCceecc
Confidence 4689999999999999999999998 5555444
No 298
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.46 E-value=0.0069 Score=62.86 Aligned_cols=144 Identities=13% Similarity=0.179 Sum_probs=77.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHH--
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKI-- 367 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~i-- 367 (466)
...+|+||||... +-..++..........++|.+++.. .......+.|..|...+.+.|++-.|....
T Consensus 95 ~~yifLDEIq~v~-~W~~~lk~l~d~~~~~v~itgsss~---------ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~ 164 (398)
T COG1373 95 KSYIFLDEIQNVP-DWERALKYLYDRGNLDVLITGSSSS---------LLSKEISESLAGRGKDLELYPLSFREFLKLKG 164 (398)
T ss_pred CceEEEecccCch-hHHHHHHHHHccccceEEEECCchh---------hhccchhhhcCCCceeEEECCCCHHHHHhhcc
Confidence 4699999999993 3444454444443334555555431 112344566778888889999999888653
Q ss_pred -----------HHHHHhhcCCc----cCH------HH-----HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHH
Q 012326 368 -----------LDIRCQEEDVE----MAE------DA-----KQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQ 421 (466)
Q Consensus 368 -----------L~~~~~~~~~~----i~~------~~-----l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~ 421 (466)
+.......|.. .+. +. ...+++.. ..+.+ .++..........-...++..
T Consensus 165 ~~~~~~~~~~~f~~Yl~~GGfP~~v~~~~~~~~~~~~~~~~~~~Di~~~~---~~~~~-~~~k~i~~~l~~~~g~~~s~~ 240 (398)
T COG1373 165 EEIEPSKLELLFEKYLETGGFPESVKADLSEKKLKEYLDTILKRDIIERG---KIENA-DLMKRILRFLASNIGSPISYS 240 (398)
T ss_pred cccchhHHHHHHHHHHHhCCCcHHHhCcchhhHHHHHHHHHHHHHHHHHc---CcccH-HHHHHHHHHHHhhcCCccCHH
Confidence 44444444431 111 00 11122222 11111 233333323334455667766
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012326 422 DIDRVYRLFLDVQRSTQYLMEYQSQYI 448 (466)
Q Consensus 422 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (466)
.+.+.+. -...+...+|++.++..|+
T Consensus 241 ~la~~l~-~is~~Ti~~Yl~~le~~fl 266 (398)
T COG1373 241 SLARELK-GISKDTIRKYLSYLEDAFL 266 (398)
T ss_pred HHHHHHh-ccchHHHHHHHHHHHHhhh
Confidence 6666553 1235567788888888885
No 299
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.44 E-value=0.00015 Score=65.63 Aligned_cols=31 Identities=35% Similarity=0.575 Sum_probs=27.5
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
++..++|+|+||+|||++|+.+|+.++ .+|+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~--~~~~ 33 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG--YDFI 33 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC--CCEE
Confidence 457999999999999999999999998 5555
No 300
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.41 E-value=0.0021 Score=65.72 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=24.7
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+++|++|+||+|+|||.|.-.+...+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCC
Confidence 3579999999999999999999887774
No 301
>PRK04296 thymidine kinase; Provisional
Probab=97.38 E-value=0.0012 Score=61.24 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.-.+++||||+|||+++..++..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999999999999888766
No 302
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.38 E-value=0.00025 Score=71.55 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=23.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..+++|+||||||||+||.++|+++-
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~ 208 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL 208 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 37999999999999999999999874
No 303
>PRK05973 replicative DNA helicase; Provisional
Probab=97.38 E-value=0.00036 Score=66.95 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=45.0
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHH
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFR 120 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~ 120 (466)
+.+.+|.+++..+++.|+||+|||+++..++...-. .-..+-+++.|++..+...++.+
T Consensus 55 ~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-----~Ge~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 55 EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-----SGRTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEEeCCHHHHHHHHHH
Confidence 446678888899999999999999999998875521 11235678889998887777654
No 304
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.37 E-value=0.02 Score=58.20 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=73.6
Q ss_pred CCccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHH-----------H-HHHHHHHhhh------------
Q 012326 260 GDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVE-----------C-FSFLNRALEN------------ 315 (466)
Q Consensus 260 ~~~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~-----------~-~~~L~~~le~------------ 315 (466)
..-+|-...+|+....+.......++ ++||||||+|.+... . ...|...+..
T Consensus 187 k~vGEsEk~IR~~F~~A~~~a~~~~a----PcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~ 262 (413)
T PLN00020 187 ENAGEPGKLIRQRYREAADIIKKKGK----MSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWRE 262 (413)
T ss_pred CcCCcHHHHHHHHHHHHHHHhhccCC----CeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccc
Confidence 33445556666666555332223444 899999999977431 1 2344444432
Q ss_pred --cCCCe-EEEEeccceeEeecccccCCCCCChhHHh--hhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHh
Q 012326 316 --EMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLD--RLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRV 390 (466)
Q Consensus 316 --~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~lls--R~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~ 390 (466)
....+ ||.+||+ |..|+++|++ |+-.+ +..|+.++..+||+.+++..++ +..-+..|++.
T Consensus 263 ~~~~~~V~VIaTTNr------------pd~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~ 327 (413)
T PLN00020 263 KEEIPRVPIIVTGND------------FSTLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFRDDGV--SREDVVKLVDT 327 (413)
T ss_pred cccCCCceEEEeCCC------------cccCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHc
Confidence 12334 6777777 9999999999 88543 3579999999999998887654 45566666665
Q ss_pred c
Q 012326 391 G 391 (466)
Q Consensus 391 a 391 (466)
.
T Consensus 328 f 328 (413)
T PLN00020 328 F 328 (413)
T ss_pred C
Confidence 4
No 305
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.00074 Score=69.89 Aligned_cols=67 Identities=33% Similarity=0.524 Sum_probs=54.5
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
++.+..|..++..+++.|.||.|||++|..+|..+... .-....++|+||+..+.+++++....++.
T Consensus 186 LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~----~~~~v~iFSLEM~~eql~~R~Ls~~s~v~ 252 (435)
T COG0305 186 LDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAAD----GRKPVAIFSLEMSEEQLVMRLLSSESGIE 252 (435)
T ss_pred hHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHh----cCCCeEEEEccCCHHHHHHHhhccccccc
Confidence 45667788888999999999999999999999876532 12347899999999999999998766553
No 306
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.00021 Score=62.63 Aligned_cols=30 Identities=33% Similarity=0.670 Sum_probs=26.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
..+||++|-||||||+++.++|...+ .+++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~--~~~i 36 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG--LEYI 36 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC--CceE
Confidence 36999999999999999999999888 4544
No 307
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.31 E-value=0.0024 Score=64.57 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=89.8
Q ss_pred cceeeeeccccccHHH----HHHHHHHhhhcCC-Ce-E-EEEeccceeEeecccccCC-CCC---ChhHHhhhhhhccCC
Q 012326 290 PGVLFIDEVHMLDVEC----FSFLNRALENEMA-PI-L-VVATNRGITRIRGTNYKSA-HGI---PMDLLDRLLIISTKP 358 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~----~~~L~~~le~~~~-~i-i-il~tn~~~~~~~~~~~~~~-~~l---~~~llsR~~~i~~~p 358 (466)
+.+++|++++.+.... +..|...+ ++.. +. + ++.++. .+. ..+ -+.+..++..+.+.+
T Consensus 77 ~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~----------~~~~~k~~k~~k~~~~~~~~~~~~~ 145 (340)
T PRK05574 77 RKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPK----------LDKAKKKSAWFKALKKKAVVVEAQP 145 (340)
T ss_pred CeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCc----------CCHHHHhhHHHHHHHhCceEEEcCC
Confidence 5699999999986542 33333333 2232 22 3 333221 000 122 346667888889999
Q ss_pred CCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 359 YTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 359 l~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
++..++..++...++..|+.+++++++++++.. ++|++.+.+-++..+.++. ...||.++|+.+..
T Consensus 146 ~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~-~~d~~~l~~El~KL~l~~~---~~~It~~~I~~~i~ 211 (340)
T PRK05574 146 PKEAELPQWIQQRLKQQGLQIDAAALQLLAERV-EGNLLALAQELEKLALLYP---DGKITLEDVEEAVP 211 (340)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CchHHHHHHHHHHHHhhcC---CCCCCHHHHHHHHh
Confidence 999999999999999999999999999999998 5999999999998876652 22399999988765
No 308
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.30 E-value=0.0022 Score=64.60 Aligned_cols=129 Identities=14% Similarity=0.184 Sum_probs=91.5
Q ss_pred cceeeeeccccc---cHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccC---CCCHH
Q 012326 290 PGVLFIDEVHML---DVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTK---PYTRD 362 (466)
Q Consensus 290 ~~vl~iDEi~~l---~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~---pl~~~ 362 (466)
+.++++++++.+ +.+....|.+.++.++... +|+++.. ...- -..+...+...+.+..|. +++.+
T Consensus 62 ~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~-~~d~-------r~k~~k~l~k~~~~~~~~~~~~~~~~ 133 (326)
T PRK07452 62 GRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTK-KPDG-------RLKSTKLLQKLAEEKEFSLIPPWDTE 133 (326)
T ss_pred ceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCC-Ccch-------HHHHHHHHHHceeEEEecCCCcccHH
Confidence 568899987654 5567778888988865544 5554321 0000 012233454455555554 45678
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 363 EIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 363 el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
++..++..+++..|+.++++++++++... ++|++.+.+-++..+.++. .++..||.++|+.+..
T Consensus 134 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~EleKL~ly~~-~~~~~It~~~V~~~v~ 197 (326)
T PRK07452 134 GLKQLVERTAQELGVKLTPEAAELLAEAV-GNDSRRLYNELEKLALYAE-NSTKPISAEEVKALVS 197 (326)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CccHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHhc
Confidence 89999999999999999999999999998 5999999999998876531 2356799999998754
No 309
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.30 E-value=0.00031 Score=64.62 Aligned_cols=26 Identities=38% Similarity=0.693 Sum_probs=22.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.+++|+||||||||++|.++++++-
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~ 72 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI 72 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence 58999999999999999999998663
No 310
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.29 E-value=0.0077 Score=62.64 Aligned_cols=144 Identities=16% Similarity=0.183 Sum_probs=83.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCC-------------e-EEEEeccceeEeecccccCC---CCCChhHHhhh-
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAP-------------I-LVVATNRGITRIRGTNYKSA---HGIPMDLLDRL- 351 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~-------------i-iil~tn~~~~~~~~~~~~~~---~~l~~~llsR~- 351 (466)
.||+.|||.|+|.++.--++..+||.-.-. + ++-++|- +.=+..++..| -++-++++|||
T Consensus 429 gGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANp--vfGRyDd~Kt~~dNIDf~~TILSRFD 506 (729)
T KOG0481|consen 429 GGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP--VFGRYDDTKTGEDNIDFMPTILSRFD 506 (729)
T ss_pred CCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCC--ccccccccCCcccccchhhhHhhhcc
Confidence 579999999999998888888888752211 1 2222221 11223334433 23457899998
Q ss_pred hhhccCCCCHH-----------------------------------HHHHHHHHHHhhcCCccCHHHHHHHHHhcC----
Q 012326 352 LIISTKPYTRD-----------------------------------EIRKILDIRCQEEDVEMAEDAKQLLTRVGE---- 392 (466)
Q Consensus 352 ~~i~~~pl~~~-----------------------------------el~~iL~~~~~~~~~~i~~~~l~~l~~~a~---- 392 (466)
.++-++.-..+ -+++.++.-..+-+-.++++|.+.|.....
T Consensus 507 mIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~ 586 (729)
T KOG0481|consen 507 MIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRK 586 (729)
T ss_pred EEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHH
Confidence 33333332211 122333321122245778888887766531
Q ss_pred -----------C----CCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHH
Q 012326 393 -----------G----TSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQR 435 (466)
Q Consensus 393 -----------~----g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~ 435 (466)
+ =..|.+-.+++.+-.+|.-+=....|++||++|+.+|.-...
T Consensus 587 ~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~vSTm 644 (729)
T KOG0481|consen 587 GVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQVSTM 644 (729)
T ss_pred HHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhHhhH
Confidence 0 124555555666666665555677899999999999965443
No 311
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0026 Score=60.53 Aligned_cols=132 Identities=19% Similarity=0.247 Sum_probs=93.9
Q ss_pred cceeeeeccccc-----------cHHHHHHHHHHhhh-----cCCCe-EEEEeccceeEeecccccCCCCCChhHHhh--
Q 012326 290 PGVLFIDEVHML-----------DVECFSFLNRALEN-----EMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDR-- 350 (466)
Q Consensus 290 ~~vl~iDEi~~l-----------~~~~~~~L~~~le~-----~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR-- 350 (466)
+.++|.||+|.+ +.+.+..++.++.. ...++ +|++||+ ..-+.++|++.
T Consensus 241 psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnr------------idild~allrpgr 308 (404)
T KOG0728|consen 241 PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNR------------IDILDPALLRPGR 308 (404)
T ss_pred CceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccc------------cccccHhhcCCCc
Confidence 789999999988 33666666666542 22355 8999998 44555666643
Q ss_pred h-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHH
Q 012326 351 L-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRL 429 (466)
Q Consensus 351 ~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~ 429 (466)
. ..++|+|++.+.-.+||+.+.++-++.=--+ +..+++.-.+.+.-..-..+..|.-+|..+.+-.||.+|.+-+..-
T Consensus 309 idrkiefp~p~e~ar~~ilkihsrkmnl~rgi~-l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~k 387 (404)
T KOG0728|consen 309 IDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN-LRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 387 (404)
T ss_pred ccccccCCCCCHHHHHHHHHHhhhhhchhcccC-HHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHH
Confidence 3 6789999999999999998887765421111 4455555434455566777888888887788889999999988876
Q ss_pred HHhHH
Q 012326 430 FLDVQ 434 (466)
Q Consensus 430 ~~~~~ 434 (466)
..+..
T Consensus 388 vm~k~ 392 (404)
T KOG0728|consen 388 VMQKD 392 (404)
T ss_pred HHhcc
Confidence 55544
No 312
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.00038 Score=67.73 Aligned_cols=27 Identities=33% Similarity=0.682 Sum_probs=24.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+.+++|+||||||||++|-|+++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 458999999999999999999999885
No 313
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.25 E-value=0.0025 Score=59.54 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=24.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEE
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVV 323 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil 323 (466)
..+++|||+.+++...+..|++........++++
T Consensus 94 ~~vliVDEasmv~~~~~~~ll~~~~~~~~klilv 127 (196)
T PF13604_consen 94 KDVLIVDEASMVDSRQLARLLRLAKKSGAKLILV 127 (196)
T ss_dssp TSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEE
T ss_pred ccEEEEecccccCHHHHHHHHHHHHhcCCEEEEE
Confidence 4699999999999999999998877744444433
No 314
>PRK09183 transposase/IS protein; Provisional
Probab=97.24 E-value=0.00031 Score=68.52 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=22.6
Q ss_pred CceEEEecCCCCChHHHHHHHHHHc
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+.+++|+||||||||++|.+++..+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998764
No 315
>PRK04132 replication factor C small subunit; Provisional
Probab=97.24 E-value=0.00014 Score=81.16 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=42.1
Q ss_pred CCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHH
Q 012326 26 GLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAI 82 (466)
Q Consensus 26 ~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~l 82 (466)
.-+|.++|||+.+ +|++||+++++.++.++ ..+..+ +++|+||||+||+..
T Consensus 6 ~~~~~~k~RP~~f-~dIiGqe~i~~~Lk~~i---~~~~i~--h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 6 EKPWVEKYRPQRL-DDIVGQEHIVKRLKHYV---KTGSMP--HLLFAGPPGVGKCLT 56 (846)
T ss_pred cccHHHhhCCCCH-HHhcCcHHHHHHHHHHH---HcCCCC--eEEEECCCCCCcccc
Confidence 3479999999999 99999999999886654 456664 578999999999643
No 316
>PTZ00202 tuzin; Provisional
Probab=97.23 E-value=0.008 Score=62.18 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=40.5
Q ss_pred CCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 40 EGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+.+|++....++..++.....+. ++-+.|+||+|||||++++.++..++
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~--privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAH--PRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCC--ceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 678999999999977776433332 36788999999999999999998775
No 317
>PRK13947 shikimate kinase; Provisional
Probab=97.22 E-value=0.00033 Score=63.52 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=26.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
.+|+|.|+||+|||++|+.+|+.++ .||+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg--~~~i 30 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLS--FGFI 30 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC--CCEE
Confidence 3799999999999999999999998 5665
No 318
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.21 E-value=0.0018 Score=62.80 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=24.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
+..++|.||+|+|||++++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 578999999999999999999988763
No 319
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.21 E-value=0.00079 Score=64.64 Aligned_cols=65 Identities=31% Similarity=0.468 Sum_probs=48.6
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcc
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGV 125 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~ 125 (466)
+.+..|..++..++|.|+||+|||+++..++..+... .-...-+++.|++..+.+.++.....++
T Consensus 4 D~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~----~g~~vly~s~E~~~~~~~~r~~~~~~~~ 68 (242)
T cd00984 4 DNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKK----QGKPVLFFSLEMSKEQLLQRLLASESGI 68 (242)
T ss_pred hhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCceEEEeCCCCHHHHHHHHHHHhcCC
Confidence 4444588888999999999999999999887654211 0133567888999999888887765554
No 320
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.20 E-value=0.051 Score=55.10 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=64.5
Q ss_pred hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 352 LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 352 ~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..+.+.+++..++.+++..+++..|+.+++++++++++.. +||++.+.+-|+....++. +...||.++|+.+..
T Consensus 135 ~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~EleKL~ly~~--~~~~It~edV~~lv~ 208 (343)
T PRK06585 135 AAIPCYADDERDLARLIDDELAEAGLRITPDARALLVALL-GGDRLASRNEIEKLALYAH--GKGEITLDDVRAVVG 208 (343)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHhC
Confidence 4567788999999999999999999999999999999998 5999999999999876652 346799999988854
No 321
>PRK00625 shikimate kinase; Provisional
Probab=97.20 E-value=0.00035 Score=63.93 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=26.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceEee
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFAMI 99 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i 99 (466)
+|+|+|+||+|||++++.+|+.++ .||+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~--~~~id~ 31 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS--LPFFDT 31 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CCEEEh
Confidence 689999999999999999999998 666643
No 322
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.19 E-value=0.0015 Score=66.71 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
+.-.+|+||||+|||++++.+++.+..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 467889999999999999999987753
No 323
>PRK03839 putative kinase; Provisional
Probab=97.18 E-value=0.00037 Score=63.94 Aligned_cols=29 Identities=34% Similarity=0.629 Sum_probs=25.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceEe
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFAM 98 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~ 98 (466)
.++|.|+||+||||+++.+|+.++ .||+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~--~~~id 30 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG--YEYVD 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEe
Confidence 488999999999999999999998 56653
No 324
>PRK07261 topology modulation protein; Provisional
Probab=97.17 E-value=0.00097 Score=60.87 Aligned_cols=31 Identities=23% Similarity=0.495 Sum_probs=26.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceEeee
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFAMIS 100 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~ 100 (466)
.++++|+||+||||+|+.+++.++ .|++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~--~~~i~~D 32 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN--CPVLHLD 32 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC--CCeEecC
Confidence 478999999999999999999887 5655443
No 325
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.16 E-value=0.00031 Score=61.51 Aligned_cols=23 Identities=43% Similarity=0.938 Sum_probs=21.8
Q ss_pred EEEecCCCCChHHHHHHHHHHcC
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+++.||||+||||+|+.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999999886
No 326
>PRK14532 adenylate kinase; Provisional
Probab=97.16 E-value=0.00035 Score=64.53 Aligned_cols=37 Identities=19% Similarity=0.423 Sum_probs=29.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceeccc
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE 108 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e 108 (466)
+++|.||||+||||+|+.+|+.++ +..++..++...+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g----~~~is~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG----MVQLSTGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC----CeEEeCcHHHHHH
Confidence 589999999999999999999997 3345555555443
No 327
>PRK07773 replicative DNA helicase; Validated
Probab=97.14 E-value=0.0022 Score=73.20 Aligned_cols=64 Identities=27% Similarity=0.507 Sum_probs=49.9
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
+.+|..++..+++.|+||+|||++|..+|...... .-....++++||+..+.+.+++....++.
T Consensus 210 l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~----~~~~V~~fSlEms~~ql~~R~~s~~~~i~ 273 (886)
T PRK07773 210 MTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIR----HRLAVAIFSLEMSKEQLVMRLLSAEAKIK 273 (886)
T ss_pred ccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHh----cCCeEEEEecCCCHHHHHHHHHHHhcCCC
Confidence 44677888889999999999999999998765311 01345688999999999999988766653
No 328
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.13 E-value=0.00031 Score=64.44 Aligned_cols=34 Identities=26% Similarity=0.662 Sum_probs=27.1
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
++++||||+||||+|+.+|+.++ +..++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~----~~~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG----FTHLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----CeEEECChHHH
Confidence 68999999999999999999997 33455554443
No 329
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.12 E-value=0.0011 Score=66.49 Aligned_cols=72 Identities=24% Similarity=0.428 Sum_probs=46.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC---CCCceEeeecc-c-------eecccCCHHHHHHHHHHHHHcccccCceEEE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG---LETPFAMISGS-E-------IFSLEMSKTEALMQAFRKAIGVRIKEEAEVI 134 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~---~~~p~~~i~~~-~-------~~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~ 134 (466)
..++++.|++|+||||++++++..+. .....+.+... + ..++.......+.+++..+...+ |..|+
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~---PD~Ii 220 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLR---PDRII 220 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCC---CCEEE
Confidence 36899999999999999999998762 11122222211 1 11221122225667777666554 99999
Q ss_pred Ecceee
Q 012326 135 EGEVVE 140 (466)
Q Consensus 135 ~dEid~ 140 (466)
.||+..
T Consensus 221 vGEiRg 226 (323)
T PRK13833 221 VGEVRD 226 (323)
T ss_pred EeecCC
Confidence 999866
No 330
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0026 Score=66.35 Aligned_cols=125 Identities=21% Similarity=0.252 Sum_probs=84.4
Q ss_pred cceeeeeccccccH----H----HHHHHHHHhhh-----cCCCe-EEEEeccceeEeecccccCCCCCChhHHh--hh-h
Q 012326 290 PGVLFIDEVHMLDV----E----CFSFLNRALEN-----EMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLD--RL-L 352 (466)
Q Consensus 290 ~~vl~iDEi~~l~~----~----~~~~L~~~le~-----~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~lls--R~-~ 352 (466)
|+|+||||+|.... . .-..|++++-+ ...++ ||-+||. |..|.++|.+ || .
T Consensus 397 PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf------------pe~LD~AL~RPGRFD~ 464 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF------------PEALDKALTRPGRFDR 464 (752)
T ss_pred CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC------------hhhhhHHhcCCCccce
Confidence 89999999998732 1 12223333322 12345 5666776 7888888875 55 5
Q ss_pred hhccCCCCHHHHHHHHHHHHhhcCCccCHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 353 IISTKPYTRDEIRKILDIRCQEEDVEMAEDA-KQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 353 ~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~-l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
.+.++.|+-.--.+||.....+. ..++++ +..|++-+.+=+.-.+-|++..|+..|..++...||+.+++-+-.
T Consensus 465 ~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akD 539 (752)
T KOG0734|consen 465 HVTVPLPDVRGRTEILKLYLSKI--PLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKD 539 (752)
T ss_pred eEecCCCCcccHHHHHHHHHhcC--CcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhh
Confidence 67778888888899999887744 333332 344555443223457788999999999999999999998876643
No 331
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.10 E-value=0.0012 Score=66.86 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=47.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecc-ce--------eccc-----CCHHH-HHHHHHHHHHcccccC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGS-EI--------FSLE-----MSKTE-ALMQAFRKAIGVRIKE 129 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~-~~--------~~~e-----~~~~~-~l~~~~~~a~~~~~~~ 129 (466)
...++++.|++|+||||+++++...+..+...+.+... ++ .++. .+... .+.+++..+...+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~--- 235 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLR--- 235 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccC---
Confidence 34799999999999999999999988753333332211 11 1111 11112 4667777776554
Q ss_pred ceEEEEcceee
Q 012326 130 EAEVIEGEVVE 140 (466)
Q Consensus 130 ~~ii~~dEid~ 140 (466)
|..|+.||+..
T Consensus 236 PD~IivGEiR~ 246 (332)
T PRK13900 236 PDRIIVGELRG 246 (332)
T ss_pred CCeEEEEecCC
Confidence 99999999776
No 332
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.10 E-value=0.00099 Score=58.12 Aligned_cols=35 Identities=31% Similarity=0.556 Sum_probs=28.9
Q ss_pred HHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 58 MIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 58 ~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
.+.....++..++|.|+.|+|||++++.+++.++.
T Consensus 14 ~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 14 AFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34444455678999999999999999999999985
No 333
>PRK14531 adenylate kinase; Provisional
Probab=97.08 E-value=0.00047 Score=63.58 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=30.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM 109 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~ 109 (466)
..+++.||||+||||+++.+|+.++ ++ .++.+++...++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g--~~--~is~gd~lr~~~ 41 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG--LR--HLSTGDLLRSEV 41 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC--CC--eEecccHHHHHH
Confidence 4689999999999999999999998 34 445556555443
No 334
>PLN02674 adenylate kinase
Probab=97.07 E-value=0.00076 Score=65.02 Aligned_cols=40 Identities=13% Similarity=0.377 Sum_probs=32.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM 109 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~ 109 (466)
...++|.||||+||||+|+.+|+.++ +..++..+++..++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~----~~his~GdllR~~i 70 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC----LCHLATGDMLRAAV 70 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC----CcEEchhHHHHHHH
Confidence 47799999999999999999999998 34556666665554
No 335
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.07 E-value=0.0018 Score=66.51 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 46 LPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 46 ~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.++.+..+++.+.. ..+.++++.||.|||||++.+++...+.
T Consensus 4 ~eQ~~~~~~v~~~~~~--~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN--EEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHHHHHHc--cCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 4455566666666654 3458999999999999999999998875
No 336
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.07 E-value=0.00058 Score=60.55 Aligned_cols=28 Identities=39% Similarity=0.725 Sum_probs=24.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
+++|+|+||+|||++|+.+|+.++ .+++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~--~~~~ 28 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG--LPFV 28 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC--CCEE
Confidence 478999999999999999999998 5555
No 337
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.06 E-value=0.0032 Score=66.27 Aligned_cols=32 Identities=38% Similarity=0.740 Sum_probs=28.5
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+.+|..++..++|+|+||+|||+++..++..+
T Consensus 73 LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~ 104 (446)
T PRK11823 73 LGGGLVPGSVVLIGGDPGIGKSTLLLQVAARL 104 (446)
T ss_pred hcCCccCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688888999999999999999999998766
No 338
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.05 E-value=0.0009 Score=65.37 Aligned_cols=112 Identities=19% Similarity=0.321 Sum_probs=68.0
Q ss_pred HhhhcccccCCCCCCCCCccccc--CCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCC
Q 012326 17 RIGAHSHIRGLGLDSSLEARDVS--EGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLET 94 (466)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~p~~~~--~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~ 94 (466)
|+|+|.+-+|.++.-+.-|...+ .++ |.+.+...+ ++ .+...+|++||+|+||||+.-++-.+++...
T Consensus 84 RvN~f~qr~~~a~vlR~Ip~~i~~~e~L-glP~i~~~~---~~------~~~GLILVTGpTGSGKSTTlAamId~iN~~~ 153 (353)
T COG2805 84 RVNAFKQRGGYALVLRLIPSKIPTLEEL-GLPPIVREL---AE------SPRGLILVTGPTGSGKSTTLAAMIDYINKHK 153 (353)
T ss_pred EeehhhhcCCcEEEEeccCccCCCHHHc-CCCHHHHHH---Hh------CCCceEEEeCCCCCcHHHHHHHHHHHHhccC
Confidence 66778888888877666665432 332 333332222 11 2336788899999999999999998888643
Q ss_pred ceEeeec---ccee---------cccCCHHH-HHHHHHHHHHcccccCceEEEEcceeee
Q 012326 95 PFAMISG---SEIF---------SLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEV 141 (466)
Q Consensus 95 p~~~i~~---~~~~---------~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~ 141 (466)
+...+.- -+|+ --|++... .+...++.|.+- .|.+|+.||+.+.
T Consensus 154 ~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALRe---DPDVIlvGEmRD~ 210 (353)
T COG2805 154 AKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALRE---DPDVILVGEMRDL 210 (353)
T ss_pred CcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhc---CCCEEEEeccccH
Confidence 3222111 1111 11233332 555566655554 4999999999885
No 339
>PRK13949 shikimate kinase; Provisional
Probab=97.05 E-value=0.00061 Score=62.08 Aligned_cols=30 Identities=30% Similarity=0.587 Sum_probs=26.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceEe
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAM 98 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~ 98 (466)
+.++|+|+||+|||++++.+|+.++ .||+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~--~~~id 31 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG--LSFID 31 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC--CCeec
Confidence 4799999999999999999999998 56654
No 340
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.04 E-value=0.0042 Score=63.72 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.8
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
++..++|+||||+|||++++.+++.+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 4678999999999999999999998753
No 341
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.03 E-value=0.0011 Score=64.86 Aligned_cols=96 Identities=15% Similarity=0.264 Sum_probs=56.6
Q ss_pred CCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCC-CceEeeeccc-e-------ecccCC
Q 012326 40 EGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLE-TPFAMISGSE-I-------FSLEMS 110 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~-~p~~~i~~~~-~-------~~~e~~ 110 (466)
+++.-.....+.+. +.+........++++.||+|+||||++.++...+... ...+.+.... + ......
T Consensus 104 e~l~~~~~~~~~~~---~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~ 180 (270)
T PF00437_consen 104 EDLGESGSIPEEIA---EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTR 180 (270)
T ss_dssp CCCCHTHHCHHHHH---HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEE
T ss_pred hhccCchhhHHHHH---HHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEee
Confidence 56654444444443 3333332335799999999999999999999988765 4444433221 1 111111
Q ss_pred -HHHHHHHHHHHHHcccccCceEEEEcceeee
Q 012326 111 -KTEALMQAFRKAIGVRIKEEAEVIEGEVVEV 141 (466)
Q Consensus 111 -~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~ 141 (466)
....+.+++..+...+ |..++.||+..-
T Consensus 181 ~~~~~~~~~l~~~LR~~---pD~iiigEiR~~ 209 (270)
T PF00437_consen 181 RDEISYEDLLKSALRQD---PDVIIIGEIRDP 209 (270)
T ss_dssp TTTBSHHHHHHHHTTS-----SEEEESCE-SC
T ss_pred cCcccHHHHHHHHhcCC---CCcccccccCCH
Confidence 2225666776665544 999999998873
No 342
>PRK14530 adenylate kinase; Provisional
Probab=97.02 E-value=0.00069 Score=64.12 Aligned_cols=29 Identities=28% Similarity=0.582 Sum_probs=25.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
+.++|.||||+||||+|+.+|+.++ .+++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~--~~~i 32 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG--VEHV 32 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC--CeEE
Confidence 5799999999999999999999998 4444
No 343
>PRK06547 hypothetical protein; Provisional
Probab=97.02 E-value=0.0011 Score=60.49 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=25.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
...+++.|++|+|||++|+.+++.++ .+++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~--~~~~ 44 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTG--FQLV 44 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC--CCee
Confidence 37888999999999999999999887 4544
No 344
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.00061 Score=60.71 Aligned_cols=27 Identities=41% Similarity=0.747 Sum_probs=23.8
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
+-+.|||||||||+|+.+|+.+| .+++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g--l~~v 29 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG--LKLV 29 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC--Ccee
Confidence 56889999999999999999999 4544
No 345
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.01 E-value=0.0006 Score=62.35 Aligned_cols=26 Identities=31% Similarity=0.638 Sum_probs=24.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.++|.|+||+||||+|+.+++.++
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46899999999999999999999886
No 346
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.00 E-value=0.00048 Score=57.75 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=21.0
Q ss_pred EEEecCCCCChHHHHHHHHHHcC
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
|.|+||||+|||++|+.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998885
No 347
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.00 E-value=0.0023 Score=59.20 Aligned_cols=73 Identities=23% Similarity=0.348 Sum_probs=43.5
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce--------ecccC-------CHHHHHHHHHHHHHcccccC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI--------FSLEM-------SKTEALMQAFRKAIGVRIKE 129 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~--------~~~e~-------~~~~~l~~~~~~a~~~~~~~ 129 (466)
.+..++|.||+|+||||++++++..+......+.+....- ..... .....+.+++..+... .
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~---~ 100 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRM---R 100 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhcc---C
Confidence 3578999999999999999999987754222222211110 00000 0011345555544443 3
Q ss_pred ceEEEEcceee
Q 012326 130 EAEVIEGEVVE 140 (466)
Q Consensus 130 ~~ii~~dEid~ 140 (466)
|..++.||+..
T Consensus 101 pd~i~igEir~ 111 (186)
T cd01130 101 PDRIIVGEVRG 111 (186)
T ss_pred CCEEEEEccCc
Confidence 89999999765
No 348
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.99 E-value=0.00065 Score=61.58 Aligned_cols=29 Identities=34% Similarity=0.636 Sum_probs=26.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
.+++|.|++|+||||+.+++|+.++ .||+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~--~~F~ 31 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN--LPFI 31 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC--CCcc
Confidence 6899999999999999999999999 6676
No 349
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.99 E-value=0.016 Score=62.33 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=28.9
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.+.-...++..+.++||+|+||||+++.++....
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 343444456789999999999999999999998775
No 350
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.98 E-value=0.0012 Score=66.27 Aligned_cols=72 Identities=18% Similarity=0.335 Sum_probs=45.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC---CCCceEeeecc--------ceecccCCHHHHHHHHHHHHHcccccCceEEE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG---LETPFAMISGS--------EIFSLEMSKTEALMQAFRKAIGVRIKEEAEVI 134 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~---~~~p~~~i~~~--------~~~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~ 134 (466)
..++++.|++|+|||+++++++..+. .....+.+... ............+.+++..+.+.+ |..|+
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~---PD~Ii 224 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMR---PDRIL 224 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCC---CCEEE
Confidence 47999999999999999999998641 11111111111 111111122225677777766554 99999
Q ss_pred Ecceee
Q 012326 135 EGEVVE 140 (466)
Q Consensus 135 ~dEid~ 140 (466)
.||+.+
T Consensus 225 vGEiR~ 230 (319)
T PRK13894 225 VGEVRG 230 (319)
T ss_pred EeccCC
Confidence 999876
No 351
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.97 E-value=0.0046 Score=63.44 Aligned_cols=33 Identities=33% Similarity=0.719 Sum_probs=28.7
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..|..++..++++|+||+|||+++..++..+.
T Consensus 75 LgGGi~~GslvLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 75 LGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred hcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456788889999999999999999999987664
No 352
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.96 E-value=0.069 Score=52.35 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=33.8
Q ss_pred CcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 41 GMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 41 ~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+++--+++.+.+..+...+. .|..+.||.|++|+||+++++..|...+
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~---~~~Gh~LLvG~~GsGr~sl~rLaa~i~~ 56 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLS---QPRGHALLVGVGGSGRQSLARLAAFICG 56 (268)
T ss_dssp -----HHHHHHHHHHHHHHC---STTEEEEEECTTTSCHHHHHHHHHHHTT
T ss_pred ceeeHHHHHHHHHHHHHHHc---CCCCCeEEecCCCccHHHHHHHHHHHhc
Confidence 56667788887766555554 3457899999999999999998777665
No 353
>PRK05629 hypothetical protein; Validated
Probab=96.96 E-value=0.0098 Score=59.80 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=91.3
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCC-eEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAP-ILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~-iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.+++++..+.........+...+.+++.. ++|++++... . -..+-+.+......+.+.|+...++..++
T Consensus 65 ~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~---~------~kk~~K~l~k~~~~ve~~~~~~~~l~~wi 135 (318)
T PRK05629 65 DRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGG---R------TKSMVPKLEKIAVVHEAAKLKPRERPGWV 135 (318)
T ss_pred ceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcc---h------hhHHHHHHHhcceEeeCCCCCHHHHHHHH
Confidence 568888887766555566677777766554 4555554210 0 01222345555677888899999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
..+++..|..++++++++++... ++|+..+.+-++..+.+ .++.||.++|+...
T Consensus 136 ~~~~~~~g~~i~~~A~~~L~~~~-g~dl~~l~~EleKL~~~----~~~~It~e~V~~~v 189 (318)
T PRK05629 136 TQEFKNHGVRPTPDVVHALLEGV-GSDLRELASAISQLVED----TQGNVTVEKVRAYY 189 (318)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHH-CccHHHHHHHHHHHHhc----CCCCcCHHHHHHHh
Confidence 99999999999999999999998 49999998888876432 23579999999884
No 354
>PHA02542 41 41 helicase; Provisional
Probab=96.96 E-value=0.0016 Score=68.98 Aligned_cols=65 Identities=14% Similarity=0.034 Sum_probs=51.2
Q ss_pred HHHH-cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 57 QMIK-EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 57 ~~l~-~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
+.+. +|..++..+++.|+||+|||++|..+|..+.. .-....++++||+..+.+.++++...++.
T Consensus 180 D~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~-----~g~~Vl~fSLEM~~~ql~~Rl~a~~~~i~ 245 (473)
T PHA02542 180 NKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQ-----QGYNVLYISMEMAEEVIAKRIDANLLDVS 245 (473)
T ss_pred HHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHh-----cCCcEEEEeccCCHHHHHHHHHHHHcCCC
Confidence 4445 67888888999999999999999999976631 11345689999999999999988766654
No 355
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.95 E-value=0.011 Score=63.64 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=29.7
Q ss_pred cceeeeecccc-ccHHHHHHHHHHhhhcCCC-eEEEEecc
Q 012326 290 PGVLFIDEVHM-LDVECFSFLNRALENEMAP-ILVVATNR 327 (466)
Q Consensus 290 ~~vl~iDEi~~-l~~~~~~~L~~~le~~~~~-iiil~tn~ 327 (466)
|+++||||+-. |+++....|.+.+++.... ++|-++++
T Consensus 534 P~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr 573 (604)
T COG4178 534 PKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573 (604)
T ss_pred CCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccc
Confidence 78999999975 5778889999999885433 47777765
No 356
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.95 E-value=0.0017 Score=65.84 Aligned_cols=73 Identities=15% Similarity=0.310 Sum_probs=46.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccc-e-------ecccC-----CHHH-HHHHHHHHHHcccccCc
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSE-I-------FSLEM-----SKTE-ALMQAFRKAIGVRIKEE 130 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~-~-------~~~e~-----~~~~-~l~~~~~~a~~~~~~~~ 130 (466)
...++++.||+|+||||++++++..+..+...+.+.... + ..+.+ +... ...+++..+.+.+ |
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~---p 237 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMR---P 237 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCC---C
Confidence 457999999999999999999998876432333222111 0 11111 1111 4556666666544 9
Q ss_pred eEEEEcceee
Q 012326 131 AEVIEGEVVE 140 (466)
Q Consensus 131 ~ii~~dEid~ 140 (466)
..|+.||+..
T Consensus 238 D~IivGEiR~ 247 (344)
T PRK13851 238 DRILLGEMRD 247 (344)
T ss_pred CeEEEEeeCc
Confidence 9999999776
No 357
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.94 E-value=0.0012 Score=65.93 Aligned_cols=72 Identities=21% Similarity=0.437 Sum_probs=45.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCC---CCceEeeec--------cceecccCCHHH-HHHHHHHHHHcccccCceEE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGL---ETPFAMISG--------SEIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEV 133 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~---~~p~~~i~~--------~~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii 133 (466)
..++++.||+|+||||+++++.+.+.. +...+.+.. ............ .+.+++..+...+ |..|
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~---pD~i 208 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLR---PDRI 208 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCC---CCEE
Confidence 479999999999999999999988732 111111111 111122222222 5667777666554 9999
Q ss_pred EEcceee
Q 012326 134 IEGEVVE 140 (466)
Q Consensus 134 ~~dEid~ 140 (466)
+.||+..
T Consensus 209 ivGEiR~ 215 (299)
T TIGR02782 209 IVGEVRG 215 (299)
T ss_pred EEeccCC
Confidence 9999776
No 358
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=96.93 E-value=0.0063 Score=62.78 Aligned_cols=74 Identities=24% Similarity=0.321 Sum_probs=46.9
Q ss_pred HhhcccccccceeeeeccccccHHHHHHHHHHhhh----c-CCCe-EEEEeccceeEeecccccCCCCCChhHHhhh-hh
Q 012326 281 REEGKAEIVPGVLFIDEVHMLDVECFSFLNRALEN----E-MAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LI 353 (466)
Q Consensus 281 ~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~----~-~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~ 353 (466)
.+-|.....+-|+|+||+|.+-.++-.+|+.-+|. . ..-+ ++|+|.+ |.++|++.++-+ .+
T Consensus 247 PEvGD~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~------------P~DiP~~VL~QLGnr 314 (502)
T PF05872_consen 247 PEVGDLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQN------------PTDIPDDVLGQLGNR 314 (502)
T ss_pred ccCCCCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCC------------CCCCCHHHHHhhhhH
Confidence 35555554556888999999955444444443332 1 1234 6777765 999999999888 44
Q ss_pred h--ccCCCCHHHHHH
Q 012326 354 I--STKPYTRDEIRK 366 (466)
Q Consensus 354 i--~~~pl~~~el~~ 366 (466)
| -+.-+|+.+.+.
T Consensus 315 IQHaLRAfTP~DqKa 329 (502)
T PF05872_consen 315 IQHALRAFTPKDQKA 329 (502)
T ss_pred HHHHHhcCCHhHHHH
Confidence 4 356666665443
No 359
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.93 E-value=0.012 Score=62.66 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=54.1
Q ss_pred cceeeeeccccccH------------HHHHHHHHHhhhcC--CCe-EEEEeccceeEeecccccCCCCCChhHHh--hh-
Q 012326 290 PGVLFIDEVHMLDV------------ECFSFLNRALENEM--API-LVVATNRGITRIRGTNYKSAHGIPMDLLD--RL- 351 (466)
Q Consensus 290 ~~vl~iDEi~~l~~------------~~~~~L~~~le~~~--~~i-iil~tn~~~~~~~~~~~~~~~~l~~~lls--R~- 351 (466)
++|+||||+|.+.. ...+.|+..++... ..+ +|.+||+ +..|++++++ |+
T Consensus 290 p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~------------~d~LDpALlRpGRfD 357 (512)
T TIGR03689 290 PVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNR------------EDMIDPAILRPGRLD 357 (512)
T ss_pred CceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCC------------hhhCCHhhcCccccc
Confidence 78999999998732 12344555544321 234 7777876 8899999998 88
Q ss_pred hhhccCCCCHHHHHHHHHHHHhh
Q 012326 352 LIISTKPYTRDEIRKILDIRCQE 374 (466)
Q Consensus 352 ~~i~~~pl~~~el~~iL~~~~~~ 374 (466)
..|+|.+|+.++..+|++.++..
T Consensus 358 ~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 358 VKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred eEEEeCCCCHHHHHHHHHHHhhc
Confidence 66899999999999999987754
No 360
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.92 E-value=0.00084 Score=62.00 Aligned_cols=34 Identities=38% Similarity=0.691 Sum_probs=26.9
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
++|.||||+|||++|+.+|+.++ .+ .++..++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~--~~--~i~~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG--LP--HISTGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--Ce--EEECcHHHH
Confidence 78999999999999999999987 33 345544443
No 361
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.92 E-value=0.048 Score=62.03 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=71.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC--C----CeEEEEeccceeEeecccccCCCCCChhHHhhh--hhhccCCCCH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM--A----PILVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIISTKPYTR 361 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~--~----~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~~~pl~~ 361 (466)
|-|+|+|++|-.++.+...|..++.... . ++....+.+ ..+++..++.- ..|.+.|++.
T Consensus 155 plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~-------------~~~~~~~~~~~~i~~I~L~PL~~ 221 (849)
T COG3899 155 PLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLR-------------PTLGEILKSATNITTITLAPLSR 221 (849)
T ss_pred CeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCcc-------------chhhHHhhcCCceeEEecCcCch
Confidence 6799999999999999998888887754 1 222211111 12222223322 5688999999
Q ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 012326 362 DEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAAL 408 (466)
Q Consensus 362 ~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~ 408 (466)
.+....+...+..- ...+.+..+.+.+.+ .|++=.+-+.++....
T Consensus 222 ~d~~~lV~~~l~~~-~~~~~p~~~~i~~kt-~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 222 ADTNQLVAATLGCT-KLLPAPLLELIFEKT-KGNPFFIEEFLKALYE 266 (849)
T ss_pred hhHHHHHHHHhCCc-ccccchHHHHHHHHh-cCCCccHHHHHHHHHh
Confidence 99999999877542 345667788888888 5888777777776654
No 362
>PRK06217 hypothetical protein; Validated
Probab=96.91 E-value=0.00099 Score=61.37 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=26.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceEe
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAM 98 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~ 98 (466)
..|+|.|+||+||||+|+++++.++ .|++.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~--~~~~~ 31 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD--IPHLD 31 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC--CcEEE
Confidence 3589999999999999999999998 56553
No 363
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.0043 Score=58.52 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=24.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLE 93 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~ 93 (466)
-+.|+.|||||||||+.+-+|+.+...
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhcc
Confidence 479999999999999999999988643
No 364
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.90 E-value=0.0039 Score=63.62 Aligned_cols=24 Identities=50% Similarity=0.857 Sum_probs=22.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+.+++.|.||||||.+|..++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 468899999999999999999988
No 365
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.89 E-value=0.00099 Score=58.40 Aligned_cols=29 Identities=38% Similarity=0.663 Sum_probs=25.1
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCCceEee
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLGLETPFAMI 99 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i 99 (466)
+.+.|+||+|||++|+.+|+.++ .|++..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~--~~~~~~ 30 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG--LPYLDT 30 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--Cceecc
Confidence 67999999999999999999998 666533
No 366
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.88 E-value=0.0014 Score=63.07 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=37.4
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHH-cCCCCceEeeeccceecccCCHHHHHHH
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKS-LGLETPFAMISGSEIFSLEMSKTEALMQ 117 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~-l~~~~p~~~i~~~~~~~~e~~~~~~l~~ 117 (466)
+.+|.+++..+|++||||+|||++|..++.. +...- .+-+++.+.+..+.+.+
T Consensus 14 l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge------~~lyvs~ee~~~~i~~~ 67 (237)
T TIGR03877 14 LHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE------PGIYVALEEHPVQVRRN 67 (237)
T ss_pred hcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC------cEEEEEeeCCHHHHHHH
Confidence 5678888999999999999999999987654 33222 23445556555554444
No 367
>PRK13948 shikimate kinase; Provisional
Probab=96.87 E-value=0.0013 Score=60.79 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=27.8
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
++.+++|.|++|+|||++++.+|+.++ .+|+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg--~~~i 39 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM--LHFI 39 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC--CCEE
Confidence 458999999999999999999999998 5666
No 368
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.86 E-value=0.00079 Score=57.43 Aligned_cols=22 Identities=50% Similarity=0.780 Sum_probs=20.8
Q ss_pred EEEecCCCCChHHHHHHHHHHc
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l 90 (466)
|+|.|+||+||||+|+.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 369
>PF13245 AAA_19: Part of AAA domain
Probab=96.84 E-value=0.0011 Score=51.95 Aligned_cols=24 Identities=42% Similarity=0.697 Sum_probs=17.2
Q ss_pred ceEEEecCCCCChHH-HHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTA-IAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~-lA~~ia~~l 90 (466)
+.+++.||||||||+ ++..++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456679999999994 555555544
No 370
>PRK06696 uridine kinase; Validated
Probab=96.84 E-value=0.0026 Score=60.53 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=29.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCC-CCceEeeecccee
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGL-ETPFAMISGSEIF 105 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~-~~p~~~i~~~~~~ 105 (466)
+..|.+.|++|+||||+|+.+++.++. ..+.+.+....|+
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 367789999999999999999999842 1455555555544
No 371
>PRK13946 shikimate kinase; Provisional
Probab=96.84 E-value=0.0012 Score=60.86 Aligned_cols=30 Identities=37% Similarity=0.684 Sum_probs=27.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
++.|+|+|+||+|||++++.+|+.++ .||+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg--~~~i 39 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG--LPFL 39 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC--CCeE
Confidence 47899999999999999999999998 5665
No 372
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.83 E-value=0.0011 Score=62.61 Aligned_cols=36 Identities=33% Similarity=0.627 Sum_probs=28.1
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceeccc
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE 108 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e 108 (466)
+++.||||+|||++|+.+|+.++ ++ .++..++...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g--~~--~is~gdllr~~ 37 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG--LP--HISTGDLLRAE 37 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CC--eeehhHHHHHh
Confidence 78999999999999999999987 33 44555554443
No 373
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.82 E-value=0.0019 Score=62.99 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=38.2
Q ss_pred HcCCCCCceEEEecCCCCChHHHHHHHHHHc-CCCCceEeeeccceecccCCHHHHHHHHHHHH
Q 012326 60 KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL-GLETPFAMISGSEIFSLEMSKTEALMQAFRKA 122 (466)
Q Consensus 60 ~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l-~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a 122 (466)
.+|.+++..++++||||||||++|..++... ... ..+.+++.|.+......++.+++
T Consensus 30 ~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~G------e~vlyis~Ee~~~~~~~~l~~~a 87 (259)
T TIGR03878 30 LGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRG------NPVLFVTVESPANFVYTSLKERA 87 (259)
T ss_pred CCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCC------CcEEEEEecCCchHHHHHHHHHH
Confidence 4688889999999999999999999887643 222 22344555654444444444433
No 374
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.82 E-value=0.0023 Score=64.07 Aligned_cols=32 Identities=31% Similarity=0.592 Sum_probs=28.5
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
.++..++|+|+||+|||++++.+|+.++ .||+
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg--~~~i 162 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLG--VPFV 162 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcC--CCEE
Confidence 3468999999999999999999999998 6666
No 375
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.019 Score=54.83 Aligned_cols=126 Identities=22% Similarity=0.305 Sum_probs=83.9
Q ss_pred cceeeeecccccc-----------HHHHHHHHHHhhh-----cCCCe-EEEEeccceeEeecccccCCCCCChhHHhh--
Q 012326 290 PGVLFIDEVHMLD-----------VECFSFLNRALEN-----EMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDR-- 350 (466)
Q Consensus 290 ~~vl~iDEi~~l~-----------~~~~~~L~~~le~-----~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR-- 350 (466)
+.++||||+|.+. .+.+..|..++.. ...++ +|++||+ ...+.|+|++.
T Consensus 249 psiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnr------------adtldpallrpgr 316 (408)
T KOG0727|consen 249 PSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNR------------ADTLDPALLRPGR 316 (408)
T ss_pred CcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCc------------ccccCHhhcCCcc
Confidence 7899999999873 3556666666542 12345 9999998 66777777753
Q ss_pred h-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 351 L-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 351 ~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
+ ..|+|+-++..+-+-++..++.+-++.-+-+.-+++++-- .-+.-....+++.|..+|-.+++-.|...|++++..
T Consensus 317 ldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpd-kis~adi~aicqeagm~avr~nryvvl~kd~e~ay~ 394 (408)
T KOG0727|consen 317 LDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPD-KISGADINAICQEAGMLAVRENRYVVLQKDFEKAYK 394 (408)
T ss_pred ccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCcc-ccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHH
Confidence 4 5688888888888777777766555433333333343321 233345566778888888777777788777777664
No 376
>PRK06762 hypothetical protein; Provisional
Probab=96.81 E-value=0.0013 Score=59.39 Aligned_cols=25 Identities=40% Similarity=0.731 Sum_probs=23.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++|+|+||+||||+|+.+++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6788999999999999999999985
No 377
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.81 E-value=0.0029 Score=59.16 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=41.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCC--ceEeee-ccce--------e-cccCCHH-HHHHHHHHHHHcccccCceEE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLET--PFAMIS-GSEI--------F-SLEMSKT-EALMQAFRKAIGVRIKEEAEV 133 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~--p~~~i~-~~~~--------~-~~e~~~~-~~l~~~~~~a~~~~~~~~~ii 133 (466)
..+++.||+|+||||++++++..+.... ..+.+. ..++ . ..+++.. ..+.+.++.+... .|.++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~---~pd~i 78 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQ---DPDVI 78 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcC---CcCEE
Confidence 4678999999999999999998875321 111111 1111 1 1122221 2455555555543 49999
Q ss_pred EEccee
Q 012326 134 IEGEVV 139 (466)
Q Consensus 134 ~~dEid 139 (466)
+.||+.
T Consensus 79 i~gEir 84 (198)
T cd01131 79 LVGEMR 84 (198)
T ss_pred EEcCCC
Confidence 999974
No 378
>PRK07914 hypothetical protein; Reviewed
Probab=96.80 E-value=0.018 Score=58.01 Aligned_cols=125 Identities=15% Similarity=0.162 Sum_probs=91.3
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCC-CeEEEEeccceeEeecccccCCCCCChhHHhh-hhhhccCCC-CHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMA-PILVVATNRGITRIRGTNYKSAHGIPMDLLDR-LLIISTKPY-TRDEIRK 366 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~-~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR-~~~i~~~pl-~~~el~~ 366 (466)
+.++++++...+..+....|...++.++. .++|++++... . ...+-..+... +.++.+.|+ +..++..
T Consensus 65 rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~---~------~kk~~K~L~k~g~~~v~~~~~~~~~~l~~ 135 (320)
T PRK07914 65 ERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGG---R------AKALANQLRKLGAEVHPCARITKAAERAD 135 (320)
T ss_pred ceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCc---c------hhHHHHHHHHCCCEEEecCCCCCHHHHHH
Confidence 56899998877766667778888888665 34666654300 0 01112234333 346788888 9999999
Q ss_pred HHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 367 ILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 367 iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
++..+++..|+.++++++++++... ++|+..+.+-++..+. ..+..||.++|+....
T Consensus 136 wi~~~a~~~g~~i~~~A~~~L~~~~-g~dl~~l~~EleKL~~----~~~~~It~e~V~~~v~ 192 (320)
T PRK07914 136 FVRKEFRSLRVKVDDDTVTALLDAV-GSDLRELASACSQLVA----DTGGAVDAAAVRRYHS 192 (320)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH-CccHHHHHHHHHHHhc----CCCCCcCHHHHHHHcC
Confidence 9999999999999999999999998 4999999988886532 1235799999998854
No 379
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.78 E-value=0.0012 Score=63.28 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=30.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM 109 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~ 109 (466)
..++|.||||+||||+|+.+|+.++ ++ .++..+++..++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g--~~--~is~gdllr~~~ 45 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN--LK--HINMGNILREEI 45 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--Cc--EEECChHHHHHh
Confidence 4589999999999999999999998 44 446666655443
No 380
>PLN02200 adenylate kinase family protein
Probab=96.78 E-value=0.0012 Score=63.41 Aligned_cols=36 Identities=19% Similarity=0.442 Sum_probs=28.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecccee
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIF 105 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~ 105 (466)
+..+++.||||+||||+|+.+|+.++ ++ .++.++++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g--~~--his~gdll 78 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFG--FK--HLSAGDLL 78 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC--Ce--EEEccHHH
Confidence 36788999999999999999999997 33 45555443
No 381
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.78 E-value=0.0013 Score=61.70 Aligned_cols=32 Identities=38% Similarity=0.521 Sum_probs=28.0
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+.+|.+++..++++||||+|||+++..++...
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788888999999999999999999988655
No 382
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.78 E-value=0.0014 Score=59.42 Aligned_cols=29 Identities=34% Similarity=0.737 Sum_probs=26.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
+.++|+|+||+|||++++.+|+.++ .||+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg--~~~~ 31 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG--YRFV 31 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC--CCEE
Confidence 4789999999999999999999998 5665
No 383
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.77 E-value=0.0013 Score=62.20 Aligned_cols=37 Identities=30% Similarity=0.539 Sum_probs=28.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceeccc
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE 108 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e 108 (466)
.+++.||||+|||++|+.+|+.++ ++ .++..++...+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~--~~--~is~~dl~r~~ 38 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG--IP--HISTGDMLRAA 38 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--Cc--EEECCccHHHH
Confidence 488999999999999999999998 33 44555555443
No 384
>PRK14528 adenylate kinase; Provisional
Probab=96.77 E-value=0.0015 Score=60.55 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=23.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.+++.||||+|||++|+.+++.++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999997
No 385
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.76 E-value=0.22 Score=55.31 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhcccccccceeeeeccccccHHH-HHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhh
Q 012326 273 IDTKVAEWREEGKAEIVPGVLFIDEVHMLDVEC-FSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDR 350 (466)
Q Consensus 273 i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~-~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR 350 (466)
+...+++.....+ +..++||+-|..+... ...|...++..+..+ ++++|.. .|.--...++=|
T Consensus 117 ~~~L~~Ela~~~~----pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~-----------rP~l~la~lRlr 181 (894)
T COG2909 117 LSSLLNELASYEG----PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS-----------RPQLGLARLRLR 181 (894)
T ss_pred HHHHHHHHHhhcC----ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc-----------CCCCcccceeeh
Confidence 3334444444444 6799999999997644 555666666666666 4444432 121111111111
Q ss_pred hhhhccC----CCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHH
Q 012326 351 LLIISTK----PYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLIT 404 (466)
Q Consensus 351 ~~~i~~~----pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~ 404 (466)
=..+++. .++.+|..+.+..+ .+..+++..++.|.+.+ +| --.++++.-
T Consensus 182 ~~llEi~~~~Lrf~~eE~~~fl~~~---~~l~Ld~~~~~~L~~~t-eG-W~~al~L~a 234 (894)
T COG2909 182 DELLEIGSEELRFDTEEAAAFLNDR---GSLPLDAADLKALYDRT-EG-WAAALQLIA 234 (894)
T ss_pred hhHHhcChHhhcCChHHHHHHHHHc---CCCCCChHHHHHHHhhc-cc-HHHHHHHHH
Confidence 1222222 26777877777753 34788999999999988 24 334554443
No 386
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.76 E-value=0.0014 Score=58.05 Aligned_cols=23 Identities=30% Similarity=0.758 Sum_probs=21.5
Q ss_pred EEEecCCCCChHHHHHHHHHHcC
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++|+|+||+||||+|+.+++.++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 68999999999999999999876
No 387
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.75 E-value=0.0012 Score=59.37 Aligned_cols=23 Identities=39% Similarity=0.741 Sum_probs=21.4
Q ss_pred EEEecCCCCChHHHHHHHHHHcC
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++|.||||+||||+|+.+++.++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999999987
No 388
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.017 Score=58.85 Aligned_cols=43 Identities=30% Similarity=0.608 Sum_probs=33.2
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeec
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISG 101 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~ 101 (466)
+.+|..++..+|+-|.||.|||||...++..+...-+..++++
T Consensus 86 LGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsG 128 (456)
T COG1066 86 LGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSG 128 (456)
T ss_pred hcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeC
Confidence 5678888999999999999999999998887754324444433
No 389
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.74 E-value=0.071 Score=53.43 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=37.4
Q ss_pred hhccCCCCHHHHHHHHHHHHhhcCC---ccCHHHHHHHHHhcCCCCHHHHHH
Q 012326 353 IISTKPYTRDEIRKILDIRCQEEDV---EMAEDAKQLLTRVGEGTSLRYAIH 401 (466)
Q Consensus 353 ~i~~~pl~~~el~~iL~~~~~~~~~---~i~~~~l~~l~~~a~~g~~R~ai~ 401 (466)
.+.+.+|+.+|.+.++....+..-+ ..++.+.+.+.-.+ +|++|.+.+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-NGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-CCCHHHhcc
Confidence 7889999999999999987776543 35666777777776 599998653
No 390
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0016 Score=59.87 Aligned_cols=24 Identities=50% Similarity=0.891 Sum_probs=22.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHcC
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++|.||||+||||+|+.+|+.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999975
No 391
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.73 E-value=0.023 Score=56.53 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=44.5
Q ss_pred cceeeeeccccccHHH----HHHHHHHhhhcCCCe-EEEEeccceeEeecccccCC-CCCChhHHhhh--h-hhccCCCC
Q 012326 290 PGVLFIDEVHMLDVEC----FSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSA-HGIPMDLLDRL--L-IISTKPYT 360 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~----~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~-~~l~~~llsR~--~-~i~~~pl~ 360 (466)
+.|+++||+|...+.. ++.|....+....|+ +|.+|.+ .+. ..+-....||| . ++-+++++
T Consensus 138 ~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr----------ld~lE~LEKRVKSRFshr~I~m~~~~~ 207 (408)
T KOG2228|consen 138 KVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR----------LDILELLEKRVKSRFSHRVIFMLPSLP 207 (408)
T ss_pred eEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc----------ccHHHHHHHHHHhhcccceeeccCCCC
Confidence 3466688999886533 555566666667788 5556644 101 22234466777 2 34456677
Q ss_pred HHHHHHHHHHHH
Q 012326 361 RDEIRKILDIRC 372 (466)
Q Consensus 361 ~~el~~iL~~~~ 372 (466)
-.++.++++...
T Consensus 208 l~~yv~l~r~ll 219 (408)
T KOG2228|consen 208 LGDYVDLYRKLL 219 (408)
T ss_pred hHHHHHHHHHHh
Confidence 888888887754
No 392
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.72 E-value=0.0015 Score=50.19 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=20.5
Q ss_pred EEEecCCCCChHHHHHHHHHHc
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l 90 (466)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 393
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.72 E-value=0.00071 Score=60.19 Aligned_cols=35 Identities=37% Similarity=0.589 Sum_probs=27.7
Q ss_pred EecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccC
Q 012326 71 IAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM 109 (466)
Q Consensus 71 L~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~ 109 (466)
|.||||+|||++|+.+|+.++ +..++..++...++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~----~~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG----LVHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT----SEEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC----cceechHHHHHHHH
Confidence 579999999999999999997 45566666555443
No 394
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0014 Score=59.10 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=21.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCC
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
.+.++|.|||||||+++.++ .++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~ 25 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGY 25 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCC
Confidence 57899999999999999999 8873
No 395
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.70 E-value=0.0017 Score=59.48 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=23.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.+++.||||+||||+|+.+++.++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999987
No 396
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.70 E-value=0.0019 Score=59.06 Aligned_cols=30 Identities=30% Similarity=0.569 Sum_probs=26.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
..+++|.||+|+|||++++.+|+.++ .+|+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~--~~~v 33 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN--MEFY 33 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC--CcEE
Confidence 36899999999999999999999987 5554
No 397
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.019 Score=62.67 Aligned_cols=130 Identities=22% Similarity=0.270 Sum_probs=88.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCC-------------------Ce---EEEEeccceeEeecccccCCCCCChhH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMA-------------------PI---LVVATNRGITRIRGTNYKSAHGIPMDL 347 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~-------------------~i---iil~tn~~~~~~~~~~~~~~~~l~~~l 347 (466)
.|||||||+..|....++.+++.+++... |+ +|++.|+ .....+.++.
T Consensus 226 gGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~----------~~l~~l~~~~ 295 (647)
T COG1067 226 GGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNR----------EDLEDLHEPD 295 (647)
T ss_pred CcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCH----------HHHHhhcccC
Confidence 68999999999999999999888876411 21 4444443 1123333444
Q ss_pred Hhhh--hh--hccCC---CCHHHHHHHHHHH----HhhcC-CccCHHHHHHHHHhcCC---------CCHHHHHHHHHHH
Q 012326 348 LDRL--LI--ISTKP---YTRDEIRKILDIR----CQEED-VEMAEDAKQLLTRVGEG---------TSLRYAIHLITAA 406 (466)
Q Consensus 348 lsR~--~~--i~~~p---l~~~el~~iL~~~----~~~~~-~~i~~~~l~~l~~~a~~---------g~~R~ai~lL~~a 406 (466)
.+|. +. ..|+. .++++..+.++.. ++..+ .+++.+|++.|...+.+ -.+|.+.++++.|
T Consensus 296 ~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A 375 (647)
T COG1067 296 RSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREA 375 (647)
T ss_pred HHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHh
Confidence 4554 22 33433 3455544444333 33324 48999999998887621 4689999999999
Q ss_pred HHHHhhhcCCccCHHHHHHHHHH
Q 012326 407 ALASQKRKGKVVEVQDIDRVYRL 429 (466)
Q Consensus 407 ~~~a~~~~~~~It~~~v~~~~~~ 429 (466)
+.+|..+++..||.+||+.++..
T Consensus 376 ~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 376 GDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred hHHHhcCCcccCcHHHHHHHHHh
Confidence 99998888999999999999865
No 398
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.68 E-value=0.013 Score=65.59 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=21.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..+|.|+||||||++++++...+.
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~ 393 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWE 393 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999887653
No 399
>PRK14526 adenylate kinase; Provisional
Probab=96.64 E-value=0.0017 Score=61.30 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=28.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceeccc
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE 108 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e 108 (466)
.++|.||||+||||+++.+|+.++ .+ .++..+++..+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~--~~--~is~G~llr~~ 38 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELN--YY--HISTGDLFREN 38 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--Cc--eeecChHHHHh
Confidence 478999999999999999999887 33 44555555443
No 400
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.64 E-value=0.041 Score=60.08 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=27.5
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+.+.-...++..+.|+||+|+||||+++.++...
T Consensus 367 ~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 367 GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3333344578899999999999999999998766
No 401
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.64 E-value=0.0025 Score=60.62 Aligned_cols=30 Identities=40% Similarity=0.686 Sum_probs=26.3
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHH
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
+.+|.+++..+|+.||||+|||+++..++.
T Consensus 12 l~GGip~gs~~li~G~~GsGKT~l~~q~l~ 41 (226)
T PF06745_consen 12 LGGGIPKGSVVLISGPPGSGKTTLALQFLY 41 (226)
T ss_dssp TTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCCCCCcEEEEEeCCCCCcHHHHHHHHH
Confidence 457888899999999999999999998764
No 402
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.64 E-value=0.0019 Score=61.09 Aligned_cols=33 Identities=36% Similarity=0.548 Sum_probs=28.3
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..|.+++..++++|+||+|||++|..+|..+.
T Consensus 12 l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 12 LGGGVERGTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred hcCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346788788899999999999999999997763
No 403
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.63 E-value=0.017 Score=55.53 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=29.1
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccc
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSE 103 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~ 103 (466)
.++.-+.|.||+||||||+.+.|.+.+....--+.+++..
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~ 64 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGED 64 (309)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCee
Confidence 3456778999999999999999999886433334444433
No 404
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.63 E-value=0.0097 Score=70.86 Aligned_cols=84 Identities=18% Similarity=0.326 Sum_probs=53.8
Q ss_pred ceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeE----eecccccCC------CCCChhHHhhhhhhccCCCC
Q 012326 291 GVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITR----IRGTNYKSA------HGIPMDLLDRLLIISTKPYT 360 (466)
Q Consensus 291 ~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~----~~~~~~~~~------~~l~~~llsR~~~i~~~pl~ 360 (466)
..+++||++..+.+.+.+|.+++++... +++-=+++.... ..+++-.++ ..+..+|++|+..++|.-.+
T Consensus 509 ~~~vlD~lnla~~dvL~aLnrllddnRe-l~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~e~~f~~~~ 587 (1856)
T KOG1808|consen 509 DWIVLDELNLAPHDVLEALNRLLDDNRE-LFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFIELHFDDIG 587 (1856)
T ss_pred CEEEeccccccchHHHHHHHhhhhhhcc-ccccccceeeccCcchhhhhhccCccccchhhhhhhcccccchhhhhhhcC
Confidence 4889999999999999999999987321 000000110000 001111112 23345788888999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 012326 361 RDEIRKILDIRCQEE 375 (466)
Q Consensus 361 ~~el~~iL~~~~~~~ 375 (466)
++++..|+..+|...
T Consensus 588 e~e~~~i~~~~~~i~ 602 (1856)
T KOG1808|consen 588 EEELEEILEHRCGIP 602 (1856)
T ss_pred chhhhhhhcccccCC
Confidence 999999998876533
No 405
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.63 E-value=0.004 Score=63.37 Aligned_cols=72 Identities=21% Similarity=0.326 Sum_probs=43.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCC--CceEeee-ccc---------eecccCCHHH-HHHHHHHHHHcccccCceE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLE--TPFAMIS-GSE---------IFSLEMSKTE-ALMQAFRKAIGVRIKEEAE 132 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~--~p~~~i~-~~~---------~~~~e~~~~~-~l~~~~~~a~~~~~~~~~i 132 (466)
...+++.||+|+||||+++++...+... ...+.+. ..+ +...+.+... .+.+.++.+... .|.+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~---~pd~ 198 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALRE---DPDV 198 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhcc---CCCE
Confidence 4788999999999999999999877531 1111111 111 1112223211 355555555443 5999
Q ss_pred EEEcceee
Q 012326 133 VIEGEVVE 140 (466)
Q Consensus 133 i~~dEid~ 140 (466)
|+.||+.+
T Consensus 199 i~vgEird 206 (343)
T TIGR01420 199 ILIGEMRD 206 (343)
T ss_pred EEEeCCCC
Confidence 99999853
No 406
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.015 Score=58.52 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=22.8
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+.-+.|.||+||||||+.+.||....
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346788999999999999999996553
No 407
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.0015 Score=60.58 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLE 93 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~ 93 (466)
+.++|+|+||+|||++|+.+|+.+...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 368999999999999999999998753
No 408
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.60 E-value=0.012 Score=60.04 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
+...+|+||||||||++++.+++.+..
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 467799999999999999999998853
No 409
>PRK14529 adenylate kinase; Provisional
Probab=96.60 E-value=0.0021 Score=61.21 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=30.2
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCC
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMS 110 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~ 110 (466)
.++|.||||+||||+++.+++.++ .+ .++..+++..++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~--~~--~is~gdllr~~i~ 40 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYD--LA--HIESGAIFREHIG 40 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CC--Ccccchhhhhhcc
Confidence 488999999999999999999998 33 3455666555443
No 410
>PRK02496 adk adenylate kinase; Provisional
Probab=96.60 E-value=0.0022 Score=59.03 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=22.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHcC
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+++.||||+|||++|+.+++.++
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999987
No 411
>PRK04040 adenylate kinase; Provisional
Probab=96.58 E-value=0.0025 Score=59.09 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.6
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++++|+||+||||+++.+++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36789999999999999999999983
No 412
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.57 E-value=0.0026 Score=59.48 Aligned_cols=38 Identities=34% Similarity=0.642 Sum_probs=27.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
+.++|+||+|||||.+|-.+|+..+ .|.+..+...++.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g--~pvI~~Driq~y~ 39 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTG--APVISLDRIQCYP 39 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH----EEEEE-SGGG-G
T ss_pred cEEEEECCCCCChhHHHHHHHHHhC--CCEEEecceeccc
Confidence 4678999999999999999999998 6777666665554
No 413
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.56 E-value=0.021 Score=63.79 Aligned_cols=25 Identities=36% Similarity=0.664 Sum_probs=22.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.++++|+||||||++++++.+.+.
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~ 363 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAE 363 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999987664
No 414
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.55 E-value=0.0054 Score=61.46 Aligned_cols=74 Identities=16% Similarity=0.310 Sum_probs=44.7
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecc-c-------eecccC-----CHHH-HHHHHHHHHHcccccC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGS-E-------IFSLEM-----SKTE-ALMQAFRKAIGVRIKE 129 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~-~-------~~~~e~-----~~~~-~l~~~~~~a~~~~~~~ 129 (466)
.++.++++.||+|+||||++++++..+..+...+.+... + ...+.. +... .+.+++..+... .
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~---~ 218 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRM---R 218 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcC---C
Confidence 345799999999999999999999876532222222110 0 001110 1111 455666655543 4
Q ss_pred ceEEEEcceee
Q 012326 130 EAEVIEGEVVE 140 (466)
Q Consensus 130 ~~ii~~dEid~ 140 (466)
|..++.||+.+
T Consensus 219 pd~ii~gE~r~ 229 (308)
T TIGR02788 219 PDRIILGELRG 229 (308)
T ss_pred CCeEEEeccCC
Confidence 99999999775
No 415
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.52 E-value=0.0051 Score=63.06 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=44.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCC---CceEeeecc-ce-----------ecccCCHHH-HHHHHHHHHHcccccCc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLE---TPFAMISGS-EI-----------FSLEMSKTE-ALMQAFRKAIGVRIKEE 130 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~---~p~~~i~~~-~~-----------~~~e~~~~~-~l~~~~~~a~~~~~~~~ 130 (466)
..+|++||+|+||||+++++.+.+... ...+.+... ++ ...+++... .+..+++.+.+. .|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~---~P 226 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRR---AP 226 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhcc---CC
Confidence 578999999999999999999877421 112222111 11 111222221 455566666554 49
Q ss_pred eEEEEcceeee
Q 012326 131 AEVIEGEVVEV 141 (466)
Q Consensus 131 ~ii~~dEid~~ 141 (466)
.+|+.||+..-
T Consensus 227 D~I~vGEiRd~ 237 (372)
T TIGR02525 227 KIIGVGEIRDL 237 (372)
T ss_pred CEEeeCCCCCH
Confidence 99999998773
No 416
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.52 E-value=0.0029 Score=61.93 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=46.6
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
+..|..++..++|.||||+|||+++..++..+-.. .-....+++.|++..+...++.+...+..
T Consensus 23 ~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~----~g~~vl~iS~E~~~~~~~~r~~~~~~~~~ 86 (271)
T cd01122 23 LTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ----HGVRVGTISLEEPVVRTARRLLGQYAGKR 86 (271)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh----cCceEEEEEcccCHHHHHHHHHHHHhCCC
Confidence 33678888899999999999999999988765211 01235567888888887777777655543
No 417
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.51 E-value=0.058 Score=58.95 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=28.9
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.+.-...++..+.++|++|+|||||++.++....
T Consensus 351 L~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred ecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 343444455778999999999999999999998774
No 418
>PRK14527 adenylate kinase; Provisional
Probab=96.51 E-value=0.0023 Score=59.28 Aligned_cols=26 Identities=38% Similarity=0.702 Sum_probs=24.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..+++.||||+|||++|+.+++.++
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999999887
No 419
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.50 E-value=0.0035 Score=61.12 Aligned_cols=33 Identities=39% Similarity=0.557 Sum_probs=27.8
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..|.+.++.+|++|+||||||+++..++....
T Consensus 16 l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~ 48 (260)
T COG0467 16 LGGGLPRGSVVLITGPPGTGKTIFALQFLYEGA 48 (260)
T ss_pred hcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 346788899999999999999999998876543
No 420
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.50 E-value=0.065 Score=59.90 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=28.8
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.+.-...++..+.|+||+|+||||+++.++....
T Consensus 490 L~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 490 LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 333444455688999999999999999999998774
No 421
>PLN02459 probable adenylate kinase
Probab=96.50 E-value=0.0024 Score=62.04 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=31.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMS 110 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~ 110 (466)
..++|.||||+||||+|..+|+.++ +..++.++++..++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~----~~~is~gdllR~ei~ 69 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLG----VPHIATGDLVREEIK 69 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC----CcEEeCcHHHHHHHh
Confidence 3588899999999999999999997 345676666655443
No 422
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.49 E-value=0.0027 Score=60.33 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=27.6
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+.+|.+++..++++||||+|||++|..++..+
T Consensus 16 l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 16 LGGGFERGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34677778899999999999999999998755
No 423
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.49 E-value=0.0038 Score=62.63 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=26.2
Q ss_pred cCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 61 EGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 61 ~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+|.++++.++++||||+|||+||..++...
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 688888899999999999999998876554
No 424
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.48 E-value=0.0023 Score=58.31 Aligned_cols=23 Identities=35% Similarity=0.691 Sum_probs=20.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHc
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 425
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.48 E-value=0.0027 Score=57.97 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=24.5
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..++|.|+||+||||+|+.+++.+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999885
No 426
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.47 E-value=0.16 Score=49.86 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=71.5
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhh---hhhccCCCCHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRL---LIISTKPYTRDEIRK 366 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~---~~i~~~pl~~~el~~ 366 (466)
...+++||+++|..+++..|.+..+....-++.+.+.+-...+ ..++....-+.+|. ..+...-.+.+++..
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~prL~~~l-----~~~~~~~~rl~srv~v~~~~~~~~~d~d~~~~ 240 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPRLFKVL-----RRPEDELSRLYSRVRVGKLLGEKFPDADELAE 240 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHHhhCceEEEecChHHHhcc-----ccchHHHHHHHHHhhhHhhhhhhhhhhHHHHH
Confidence 5699999999999999999999988876655555544311100 11111111222332 111112233344544
Q ss_pred HHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCH
Q 012326 367 ILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEV 420 (466)
Q Consensus 367 iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~ 420 (466)
+...... ..+++++..+..-. .|++|..-.++.-+...++.++-..++.
T Consensus 241 ~~~~~l~----~~~~~~v~~~~~~~-~g~~~~L~~~l~~~~~~a~~~~~~~~~~ 289 (297)
T COG2842 241 IAALVLP----TEDELVLMQVIKET-EGNIRRLDKILAGAVGTARSNGIKDIDK 289 (297)
T ss_pred HHHhhCc----cchHHHHHHHHHhc-chhHhHHHHHHhhhhhhhhhccccccch
Confidence 4444222 25667777777666 5999999999988887776666555543
No 427
>PRK05907 hypothetical protein; Provisional
Probab=96.47 E-value=0.041 Score=55.13 Aligned_cols=124 Identities=16% Similarity=0.075 Sum_probs=91.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCC-eEEEEeccceeEeecccccCCCCCChhHHh---hhhhh----ccCCCCH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAP-ILVVATNRGITRIRGTNYKSAHGIPMDLLD---RLLII----STKPYTR 361 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~-iiil~tn~~~~~~~~~~~~~~~~l~~~lls---R~~~i----~~~pl~~ 361 (466)
+.++++...+.+..+....|.+.+++++.. ++++.+.. . .--..+.. ....+ .+.++..
T Consensus 70 rRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~------------~-d~~kkl~K~i~k~~~v~~~~e~~~l~e 136 (311)
T PRK05907 70 QETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTK------------Q-ECFSSLSKKLSSALCLSLFGEWFADRD 136 (311)
T ss_pred eEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEec------------c-cHHHHHHHHHhhcceeccccccCCCCH
Confidence 446677666667666677888999887764 44423211 0 11112222 23333 7999999
Q ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 362 DEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 362 ~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
.++.+++..++++.|..++++++++++...+++|+..+.+-++..+.++ .++..||.++|+....
T Consensus 137 ~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~--g~~~~It~e~V~~lv~ 201 (311)
T PRK05907 137 KRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQM--GKKESLEASDIQSFVV 201 (311)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhc--CCCCeECHHHHHHHhc
Confidence 9999999999999999999999999999884489999999999887664 2567899999999854
No 428
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.47 E-value=0.0032 Score=57.70 Aligned_cols=45 Identities=31% Similarity=0.328 Sum_probs=29.2
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHH
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQA 118 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~ 118 (466)
++++||||||||+++..++...-.. -...-+++.+.+..+.+.++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-----g~~v~~~s~e~~~~~~~~~~ 46 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-----GEPGLYVTLEESPEELIENA 46 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHH
Confidence 6899999999999999887654211 12233455565555544443
No 429
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.46 E-value=0.012 Score=57.69 Aligned_cols=72 Identities=18% Similarity=0.365 Sum_probs=44.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCC-CCceEeeecc-c-----eecccCCHH--HHHHHHHHHHHcccccCceEEEEcc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGL-ETPFAMISGS-E-----IFSLEMSKT--EALMQAFRKAIGVRIKEEAEVIEGE 137 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~-~~p~~~i~~~-~-----~~~~e~~~~--~~l~~~~~~a~~~~~~~~~ii~~dE 137 (466)
..+++.||+|+||||+++++...+.. ...++.+... + +...++... .....+++.+... .|.+++.||
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~---~PD~i~vgE 157 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQ---DPDIIMVGE 157 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhcc---CCCEEEecc
Confidence 57899999999999999999877753 1222322111 1 111112211 1355555555543 499999999
Q ss_pred eeee
Q 012326 138 VVEV 141 (466)
Q Consensus 138 id~~ 141 (466)
+..-
T Consensus 158 iR~~ 161 (264)
T cd01129 158 IRDA 161 (264)
T ss_pred CCCH
Confidence 8763
No 430
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=96.45 E-value=0.64 Score=48.34 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=38.3
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHH
Q 012326 43 VGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 43 vG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
||++...+++..-++.+..|.. ..-++.|.-|+|||++++.+...
T Consensus 28 VGr~~e~~~l~~~l~~v~~G~s--~~kfi~G~YGsGKTf~l~~i~~~ 72 (416)
T PF10923_consen 28 VGREREIEALDRDLDRVADGGS--SFKFIRGEYGSGKTFFLRLIRER 72 (416)
T ss_pred echHHHHHHHHHHHHHHhCCCC--eEEEEEeCCCCcHHHHHHHHHHH
Confidence 8999999999888888877654 57788999999999999877653
No 431
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=96.45 E-value=0.044 Score=55.34 Aligned_cols=120 Identities=13% Similarity=0.161 Sum_probs=87.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEE-eccceeEeecccccCCCCCChhHHhh------hhhhccCCCCHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVA-TNRGITRIRGTNYKSAHGIPMDLLDR------LLIISTKPYTRD 362 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~-tn~~~~~~~~~~~~~~~~l~~~llsR------~~~i~~~pl~~~ 362 (466)
+.++++.+......+....|...++.+...++++. .+. ... ...+... ...+.+.+++..
T Consensus 72 ~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~------------~~k-~kkl~k~~~~~k~~~~v~~~~~~~~ 138 (328)
T PRK08487 72 KNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGA------------DSK-TKDIEKLFQKKDEAVFVRFFKPNAR 138 (328)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCC------------cch-hHHHHHHhccCCCceEEEeeCCCHH
Confidence 45888887766666666777777777654444433 321 100 0111111 235778899999
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 363 EIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 363 el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
++..++..+++..|+.++++++.+++... ++|+..+.+=|+....+. ..||.++|..+..
T Consensus 139 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~ELeKL~ly~-----~~It~edV~~~v~ 198 (328)
T PRK08487 139 EALELLQERAKELGLDIDQNALNHLYFIH-NEDLALAANELEKLAILN-----EPITLKDIQELVF 198 (328)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHh-CcHHHHHHHHHHHHHHhc-----CCCCHHHHHHHhc
Confidence 99999999999999999999999999998 599999999898887663 2699999999864
No 432
>PRK08233 hypothetical protein; Provisional
Probab=96.43 E-value=0.0029 Score=57.65 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.-+.+.|+||+||||+|..++..++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5677899999999999999999885
No 433
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.42 E-value=0.0028 Score=57.88 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++|.||||+|||+++++++..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999875
No 434
>PRK04328 hypothetical protein; Provisional
Probab=96.42 E-value=0.0032 Score=61.12 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=26.8
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHH
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
+.+|.+++..+|++||||+|||+++..++..
T Consensus 16 L~GGip~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 16 LYGGIPERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred hcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578888999999999999999999987654
No 435
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.41 E-value=0.1 Score=56.85 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=27.5
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.-...++..+.|+||.|+||||+++.++....
T Consensus 362 i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred ceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 333445678999999999999999999998775
No 436
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.028 Score=63.05 Aligned_cols=111 Identities=18% Similarity=0.104 Sum_probs=60.7
Q ss_pred cceeeeeccccccHHHH-------HHHHHHhhhcCCCeEEEEeccceeEeecccccCC----CCCChhHHhhhhhhccCC
Q 012326 290 PGVLFIDEVHMLDVECF-------SFLNRALENEMAPILVVATNRGITRIRGTNYKSA----HGIPMDLLDRLLIISTKP 358 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~-------~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~----~~l~~~llsR~~~i~~~p 358 (466)
..||||||+|.+..... ..+++.+-. ++...++|+++... -.-.|+|-+|+..+.+.-
T Consensus 281 gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~-----------rg~l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~ 349 (898)
T KOG1051|consen 281 GVILFLGELHWLVGSGSNYGAIDAANLLKPLLA-----------RGGLWCIGATTLETYRKCIEKDPALERRWQLVLVPI 349 (898)
T ss_pred cEEEEecceeeeecCCCcchHHHHHHhhHHHHh-----------cCCeEEEecccHHHHHHHHhhCcchhhCcceeEecc
Confidence 46999999999844221 122222222 22233333322111 122457778886666777
Q ss_pred CCHHHHHHHHHHHHhhc----CCccCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHh
Q 012326 359 YTRDEIRKILDIRCQEE----DVEMAEDAKQLLTRVGE-----GTSLRYAIHLITAAALASQ 411 (466)
Q Consensus 359 l~~~el~~iL~~~~~~~----~~~i~~~~l~~l~~~a~-----~g~~R~ai~lL~~a~~~a~ 411 (466)
++.++...||....... ++.++++++...+..+. ..=+..++.+.+.|++...
T Consensus 350 pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~ 411 (898)
T KOG1051|consen 350 PSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVK 411 (898)
T ss_pred CcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHh
Confidence 77777666766544442 45666666665555441 1223467888887765553
No 437
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.40 E-value=0.0024 Score=60.15 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=17.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHc
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l 90 (466)
..++.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 48899999999998777777666
No 438
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.39 E-value=0.0051 Score=58.45 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=36.1
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHc-CCCCceEeeeccceecccCCHHHHHHH
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL-GLETPFAMISGSEIFSLEMSKTEALMQ 117 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l-~~~~p~~~i~~~~~~~~e~~~~~~l~~ 117 (466)
+.+|.+++..+++.|+||+|||+++..++... ...- ..-+++.+.+..+.+.+
T Consensus 9 l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~------~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 9 LGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGE------KAMYISLEEREERILGY 62 (224)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC------eEEEEECCCCHHHHHHH
Confidence 45688888999999999999999999887543 2222 23445555555444433
No 439
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.39 E-value=0.03 Score=62.69 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=28.6
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.+.-...++..+.|+||+|+||||+++.++..+.
T Consensus 498 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 33343455789999999999999999999998775
No 440
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.38 E-value=0.0034 Score=59.79 Aligned_cols=31 Identities=35% Similarity=0.569 Sum_probs=26.9
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHH
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
+..|.+++..++++||||+|||+++..++..
T Consensus 13 l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 13 LEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred hcCCCcCCeEEEEECCCCCChHHHHHHHHHH
Confidence 4578888999999999999999999987753
No 441
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.37 E-value=0.036 Score=60.20 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=26.3
Q ss_pred CCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 62 ~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
...++..+.++|++|+||||+++.++....
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 445678999999999999999999998775
No 442
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.37 E-value=0.0019 Score=61.34 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.1
Q ss_pred CceEEEecCCCCChHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMA 87 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia 87 (466)
+..+||||+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 3679999999999999999986
No 443
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.37 E-value=0.067 Score=58.30 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=28.8
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.+.-...++..+.++||+|+||||+++.++....
T Consensus 356 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 333343455788999999999999999999998775
No 444
>PHA02774 E1; Provisional
Probab=96.35 E-value=0.0053 Score=65.56 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=29.0
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..+..+.+...+++|+||||||||++|.++++.++
T Consensus 424 lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 424 LKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445555446899999999999999999999985
No 445
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.34 E-value=0.019 Score=65.92 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=34.9
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecc
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~ 107 (466)
.+++.+-|+||+||||+|+...+-+..+.+.-.+.+++.++.++
T Consensus 1014 ~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~l 1057 (1228)
T KOG0055|consen 1014 RAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDL 1057 (1228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccC
Confidence 45789999999999999999999998876555666666555443
No 446
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.34 E-value=0.0036 Score=57.06 Aligned_cols=27 Identities=41% Similarity=0.607 Sum_probs=24.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.|+||+|||++|+.++..+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999874
No 447
>PRK04182 cytidylate kinase; Provisional
Probab=96.33 E-value=0.0038 Score=56.75 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=24.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
.++|.|+||+|||++|+.+|+.++ .|++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg--~~~i 29 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG--LKHV 29 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CcEe
Confidence 478999999999999999999998 4544
No 448
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.33 E-value=0.012 Score=61.55 Aligned_cols=74 Identities=18% Similarity=0.326 Sum_probs=44.4
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCCC-CceEeeecc-ce-----ecccCCHHH--HHHHHHHHHHcccccCceEEEE
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLE-TPFAMISGS-EI-----FSLEMSKTE--ALMQAFRKAIGVRIKEEAEVIE 135 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~~-~p~~~i~~~-~~-----~~~e~~~~~--~l~~~~~~a~~~~~~~~~ii~~ 135 (466)
|..-+|++||+|+|||++..++.+.++.. ...+.+... ++ .-..+...- .....++...+. .|.+|..
T Consensus 257 p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRq---DPDvImV 333 (500)
T COG2804 257 PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQ---DPDVIMV 333 (500)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhcc---CCCeEEE
Confidence 33566788999999999999999988753 222222111 11 111111111 344444444433 5999999
Q ss_pred cceeee
Q 012326 136 GEVVEV 141 (466)
Q Consensus 136 dEid~~ 141 (466)
|||.+.
T Consensus 334 GEIRD~ 339 (500)
T COG2804 334 GEIRDL 339 (500)
T ss_pred eccCCH
Confidence 999884
No 449
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.32 E-value=0.078 Score=59.08 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=28.3
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.+.-...++..+.++||+|+||||+++.++....
T Consensus 470 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 470 DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33333455689999999999999999999998774
No 450
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.31 E-value=0.085 Score=56.83 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=28.9
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.+.-...++..+.++||+|+||||+++.++....
T Consensus 338 l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred ccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 333444456788999999999999999999998764
No 451
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.30 E-value=0.0098 Score=50.78 Aligned_cols=55 Identities=33% Similarity=0.423 Sum_probs=42.2
Q ss_pred cceeeeeccccccHHH-----------HHHHHHHhhhcCC---Ce-EEEEeccceeEeecccccCCCCCChhHH-hhh-h
Q 012326 290 PGVLFIDEVHMLDVEC-----------FSFLNRALENEMA---PI-LVVATNRGITRIRGTNYKSAHGIPMDLL-DRL-L 352 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~-----------~~~L~~~le~~~~---~i-iil~tn~~~~~~~~~~~~~~~~l~~~ll-sR~-~ 352 (466)
++|++|||+|.+.... .+.|.+.++.... ++ +|++||+ +..++++++ +|| .
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~------------~~~i~~~l~~~rf~~ 126 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS------------PDKIDPALLRSRFDR 126 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS------------GGGSCHHHHSTTSEE
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC------------hhhCCHhHHhCCCcE
Confidence 6899999999997765 7778888877655 34 7777776 789999999 998 3
Q ss_pred hhcc
Q 012326 353 IIST 356 (466)
Q Consensus 353 ~i~~ 356 (466)
++.+
T Consensus 127 ~i~~ 130 (132)
T PF00004_consen 127 RIEF 130 (132)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 3433
No 452
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.29 E-value=0.083 Score=59.07 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=26.3
Q ss_pred CCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 62 ~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
...++..+.++||+|+||||+++.++....
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445678999999999999999999998774
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.27 E-value=0.0043 Score=59.43 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.3
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHH
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
+.+|.+++..++++|+||+|||+++..++..
T Consensus 18 l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 18 LGGGIPFPSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred hCCCCcCCcEEEEECCCCCChHHHHHHHHHH
Confidence 4578888899999999999999999999754
No 454
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.25 E-value=0.0049 Score=52.98 Aligned_cols=30 Identities=37% Similarity=0.800 Sum_probs=25.2
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcCCC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLGLE 93 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~~~ 93 (466)
.++..++|.|+=|+|||++++.+++.++.+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 456789999999999999999999999853
No 455
>PRK01184 hypothetical protein; Provisional
Probab=96.24 E-value=0.0046 Score=56.80 Aligned_cols=24 Identities=29% Similarity=0.718 Sum_probs=21.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++|+||||+||||+++ +++.++
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g 25 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMG 25 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcC
Confidence 367899999999999997 788887
No 456
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.20 E-value=0.0037 Score=55.23 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=21.0
Q ss_pred EEEecCCCCChHHHHHHHHHHcC
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++++||||+|||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998774
No 457
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.20 E-value=0.038 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999984
No 458
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.19 E-value=0.017 Score=53.98 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.7
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
++.++|+||.|+||||+++.++.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 36889999999999999999984
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.18 E-value=0.0039 Score=57.59 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=22.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++|.||+|+||||+++.++...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5789999999999999999998775
No 460
>PRK13764 ATPase; Provisional
Probab=96.18 E-value=0.008 Score=65.08 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=24.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
.+++|++||||+||||++++++..+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 378999999999999999999988763
No 461
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.17 E-value=0.042 Score=61.32 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=27.3
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.-...++..+.++||+|+||||+++.++....
T Consensus 484 i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 484 VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 333445678999999999999999999997774
No 462
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.17 E-value=0.0075 Score=61.61 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=24.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..++++||+|+||||+++++.+++.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999998873
No 463
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.16 E-value=0.0075 Score=60.58 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=26.0
Q ss_pred cCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 61 EGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 61 ~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+|.++++.+.++||||+|||+||..++...
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~ 79 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEA 79 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578888899999999999999999877544
No 464
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.15 E-value=0.0054 Score=55.28 Aligned_cols=24 Identities=42% Similarity=0.717 Sum_probs=22.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHcC
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+.++|+||+|||++|+.+++.++
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999987
No 465
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.15 E-value=0.0041 Score=61.76 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=22.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
..+++.|+||+||||+|+.+++.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999999988
No 466
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.15 E-value=0.055 Score=60.08 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=27.9
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.+.-...|+.-+-++|++||||||+++.+.....
T Consensus 490 ~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred hceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33344456678899999999999999999997664
No 467
>PLN02199 shikimate kinase
Probab=96.15 E-value=0.0094 Score=58.81 Aligned_cols=31 Identities=39% Similarity=0.642 Sum_probs=27.8
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
++++|+|+|.+|+|||++++.+|+.++ .||+
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg--~~fI 131 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLG--YTFF 131 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC--CCEE
Confidence 358999999999999999999999998 5665
No 468
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.13 E-value=0.0047 Score=58.98 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=27.5
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+.+|.+++..+.|+||||+|||+++..++-..
T Consensus 12 l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 12 LGGGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred ccCCCCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 45678888999999999999999999998554
No 469
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.13 E-value=0.0057 Score=58.62 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=25.4
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+..|.+++..++++||||||||++|..++...
T Consensus 17 l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 17 LGGGIPAGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred hCCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44567778899999999999999986665433
No 470
>PRK13808 adenylate kinase; Provisional
Probab=96.12 E-value=0.0099 Score=59.84 Aligned_cols=35 Identities=23% Similarity=0.512 Sum_probs=27.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
.|+|.||||+|||+++..|++.++ ++ .++..+++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg--l~--~is~gdlLR 36 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG--IV--QLSTGDMLR 36 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--Cc--eecccHHHH
Confidence 488999999999999999999997 33 445555543
No 471
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.10 E-value=0.0043 Score=55.85 Aligned_cols=26 Identities=38% Similarity=0.719 Sum_probs=20.0
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
|.|+|+|||||||+++.++.. + .+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g--~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-G--YPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T---EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-C--CeEE
Confidence 689999999999999999988 5 4543
No 472
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.046 Score=59.45 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=28.0
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.--..|+..+-|+||.|.||||+|.-+-+...
T Consensus 487 lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~ 519 (716)
T KOG0058|consen 487 LSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD 519 (716)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 344556789999999999999999999988775
No 473
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.10 E-value=0.16 Score=55.21 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=27.0
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.-...++..+.++||+|+||||+++.++....
T Consensus 334 i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 334 VNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 333445678999999999999999999997664
No 474
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.10 E-value=0.49 Score=45.53 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
+.-+||-|+||+|||++|.-+|..++-
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rLgI 115 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRLGI 115 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHcCC
Confidence 488889999999999999999999983
No 475
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.043 Score=59.16 Aligned_cols=128 Identities=22% Similarity=0.287 Sum_probs=88.9
Q ss_pred cceeeeeccccccH--------------HHHHHHHHHhhhcC--CCe-EEEEeccceeEeecccccCCCCCChhHHh--h
Q 012326 290 PGVLFIDEVHMLDV--------------ECFSFLNRALENEM--API-LVVATNRGITRIRGTNYKSAHGIPMDLLD--R 350 (466)
Q Consensus 290 ~~vl~iDEi~~l~~--------------~~~~~L~~~le~~~--~~i-iil~tn~~~~~~~~~~~~~~~~l~~~lls--R 350 (466)
|+|+||||+|.... ..++.|+--++... .++ ++-+||| |.-+.++|++ |
T Consensus 243 P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNR------------pdVlD~ALlRpgR 310 (596)
T COG0465 243 PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNR------------PDVLDPALLRPGR 310 (596)
T ss_pred CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCC------------cccchHhhcCCCC
Confidence 78999999998732 24555555554433 345 6667777 7667778774 3
Q ss_pred h-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHH
Q 012326 351 L-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRL 429 (466)
Q Consensus 351 ~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~ 429 (466)
+ ..+.+.-|+-....+|++.+++...+..+-+ +..+++....-+.-...+++..|+.+|...++..|+..++.++..-
T Consensus 311 FDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd-l~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~dr 389 (596)
T COG0465 311 FDRQILVELPDIKGREQILKVHAKNKPLAEDVD-LKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDR 389 (596)
T ss_pred cceeeecCCcchhhHHHHHHHHhhcCCCCCcCC-HHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHH
Confidence 4 4566788888999999998777665542222 3336666543333467888888888888899999999999999874
Q ss_pred H
Q 012326 430 F 430 (466)
Q Consensus 430 ~ 430 (466)
.
T Consensus 390 v 390 (596)
T COG0465 390 V 390 (596)
T ss_pred H
Confidence 3
No 476
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.08 E-value=0.17 Score=56.49 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=27.5
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.-...++..+.++||+|+||||+++.++....
T Consensus 476 i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~ 508 (694)
T TIGR01846 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT 508 (694)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 333445678999999999999999999998775
No 477
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.08 E-value=0.057 Score=48.61 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=35.0
Q ss_pred HHHHHhhcccccccceeeeeccccccH---HHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhh
Q 012326 277 VAEWREEGKAEIVPGVLFIDEVHMLDV---ECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL 351 (466)
Q Consensus 277 ~~~~~~~~~~~~~~~vl~iDEi~~l~~---~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~ 351 (466)
..+....+. +.+++|||+...-. -....+.++++..+... +|++.. ..|+.|+.+.
T Consensus 87 a~~~~~~~~----~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr---------------~~p~~l~e~A 146 (159)
T cd00561 87 AKEAIASGE----YDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGR---------------NAPKELIEAA 146 (159)
T ss_pred HHHHHhcCC----CCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECC---------------CCCHHHHHhC
Confidence 344445555 78999999987733 12344566666655555 555553 5677787776
No 478
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.07 E-value=0.0058 Score=57.07 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=24.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||+|+|||++++.+++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 467899999999999999999999764
No 479
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.07 E-value=0.0048 Score=65.77 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=26.8
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHH
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
+.+|.++++.+|++||||||||++|..++-
T Consensus 14 l~GGlp~g~~~Li~G~pGsGKT~la~qfl~ 43 (484)
T TIGR02655 14 SHGGLPIGRSTLVSGTSGTGKTLFSIQFLY 43 (484)
T ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 467888899999999999999999998854
No 480
>PRK10436 hypothetical protein; Provisional
Probab=96.06 E-value=0.024 Score=59.81 Aligned_cols=74 Identities=16% Similarity=0.303 Sum_probs=44.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCCC-CceEeeecc-ce-----ecccCCHH--HHHHHHHHHHHcccccCceEEEE
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLE-TPFAMISGS-EI-----FSLEMSKT--EALMQAFRKAIGVRIKEEAEVIE 135 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~~-~p~~~i~~~-~~-----~~~e~~~~--~~l~~~~~~a~~~~~~~~~ii~~ 135 (466)
+...+|++||+|+||||+..++..++... ...+.+... ++ ...++... ..+...++.+.+. .|.+|+.
T Consensus 217 ~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~---dPDvI~v 293 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQ---DPDVIMV 293 (462)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEeeCCccCcCHHHHHHHHhcC---CCCEEEE
Confidence 33678899999999999999888877532 222222211 11 11111111 1345555554443 5999999
Q ss_pred cceeee
Q 012326 136 GEVVEV 141 (466)
Q Consensus 136 dEid~~ 141 (466)
||+.+-
T Consensus 294 GEIRD~ 299 (462)
T PRK10436 294 GEIRDG 299 (462)
T ss_pred CCCCCH
Confidence 998874
No 481
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.32 Score=49.81 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=37.5
Q ss_pred hHHhhhhhhccCCCCHHHHHHHHHHHHhhcCC--cc-CHHHHHHHHHhcCCCCHH
Q 012326 346 DLLDRLLIISTKPYTRDEIRKILDIRCQEEDV--EM-AEDAKQLLTRVGEGTSLR 397 (466)
Q Consensus 346 ~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~--~i-~~~~l~~l~~~a~~g~~R 397 (466)
+.++.+..|.+.+|+.+|...++....+.-=+ .+ +++..+.+.-++ +|+++
T Consensus 398 e~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~ 451 (461)
T KOG3928|consen 398 EALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPS 451 (461)
T ss_pred hhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHH
Confidence 45666778899999999999988776553311 23 377788888888 59984
No 482
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.05 E-value=0.0078 Score=61.80 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 40 EGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+|.--.+..++.+..- ..++|+.||||.||||||+++|..+.
T Consensus 247 edY~L~dkl~eRL~er----------aeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 247 EDYGLSDKLKERLEER----------AEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred hhcCCCHHHHHHHHhh----------hcceEEecCCCCChhHHHHHHHHHHH
Confidence 4544455555555322 27999999999999999999998775
No 483
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.055 Score=54.86 Aligned_cols=149 Identities=21% Similarity=0.180 Sum_probs=77.9
Q ss_pred cceeeeeccccccH------------HHHHHHHHHhh---hcCCC---eEEEE-eccceeEeecccccCCCCCChhHHhh
Q 012326 290 PGVLFIDEVHMLDV------------ECFSFLNRALE---NEMAP---ILVVA-TNRGITRIRGTNYKSAHGIPMDLLDR 350 (466)
Q Consensus 290 ~~vl~iDEi~~l~~------------~~~~~L~~~le---~~~~~---iiil~-tn~~~~~~~~~~~~~~~~l~~~llsR 350 (466)
|.++||||||.|.. .+-+.|+--+. ..... +++++ ||- |..|.++|++|
T Consensus 305 PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~------------PWdiDEAlrRR 372 (491)
T KOG0738|consen 305 PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF------------PWDIDEALRRR 372 (491)
T ss_pred CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCC------------CcchHHHHHHH
Confidence 88999999999843 22333443332 22333 54444 444 89999999999
Q ss_pred hhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-----------------hh
Q 012326 351 LLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ-----------------KR 413 (466)
Q Consensus 351 ~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~-----------------~~ 413 (466)
+..--+-||+..+-+.-|..++-..-..-++--++.|++.+.+-+.-..-++++.|...+- ..
T Consensus 373 lEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~ 452 (491)
T KOG0738|consen 373 LEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEE 452 (491)
T ss_pred HhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhc
Confidence 9543344555545555554444333222233336666766532222334444444432221 11
Q ss_pred cCCccCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 012326 414 KGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINEVT 452 (466)
Q Consensus 414 ~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (466)
-...|+.+|++.|+... ....+..-+..| .||+.++.
T Consensus 453 ~~~pv~~~Dfe~Al~~v-~pSvs~~d~~k~-ekW~~efG 489 (491)
T KOG0738|consen 453 PKMPVTNEDFEEALRKV-RPSVSAADLEKY-EKWMDEFG 489 (491)
T ss_pred cccccchhhHHHHHHHc-CcCCCHHHHHHH-HHHHHHhc
Confidence 22457788888877543 222222333333 45665553
No 484
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.03 E-value=0.0063 Score=56.89 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..+++.|+||+|||++|+.+|..++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36789999999999999999999987
No 485
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.03 E-value=0.0048 Score=59.75 Aligned_cols=23 Identities=35% Similarity=0.771 Sum_probs=21.4
Q ss_pred EEEecCCCCChHHHHHHHHHHcC
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++|+|+||+||||+|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 486
>PRK07667 uridine kinase; Provisional
Probab=96.02 E-value=0.015 Score=54.01 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=26.1
Q ss_pred HHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 57 QMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 57 ~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.+..-......+.|.|+||+|||++|..+++.+.
T Consensus 8 ~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44443333335667899999999999999999875
No 487
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.01 E-value=0.16 Score=46.99 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHc
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
....+.+||++|.|||+.|..+|-..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra 46 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA 46 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH
Confidence 44789999999999999999988533
No 488
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=96.01 E-value=0.011 Score=53.38 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=69.6
Q ss_pred cceeeeecc----ccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHH
Q 012326 290 PGVLFIDEV----HMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEI 364 (466)
Q Consensus 290 ~~vl~iDEi----~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el 364 (466)
+.+++|..+ +.........|...++.+...+ +|+.++. ...- ...+-..+...+.++.+.+++..++
T Consensus 58 ~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~-~~~~-------~~k~~k~l~~~~~~~~~~~~~~~~~ 129 (172)
T PF06144_consen 58 KKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEE-KLDK-------RKKLYKALKKQAIVIECKKPKEQEL 129 (172)
T ss_dssp EEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES--S--H-------HHHHHHHHTTTEEEEEE----TTTH
T ss_pred CeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCC-chhh-------hhhHHHHHhcccceEEecCCCHHHH
Confidence 468999998 5566677888888888876665 5555541 1000 0112234445567788999999999
Q ss_pred HHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012326 365 RKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAA 406 (466)
Q Consensus 365 ~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a 406 (466)
..+++.+++..|+.++++++++++... ++|++.+.+-|+..
T Consensus 130 ~~~i~~~~~~~g~~i~~~a~~~L~~~~-~~d~~~l~~EleKL 170 (172)
T PF06144_consen 130 PRWIKERAKKNGLKIDPDAAQYLIERV-GNDLSLLQNELEKL 170 (172)
T ss_dssp HHHHHHHHHHTT-EE-HHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHh-ChHHHHHHHHHHHh
Confidence 999999999999999999999999998 59999888877654
No 489
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.00 E-value=0.079 Score=56.41 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=26.5
Q ss_pred HcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 60 KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 60 ~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.-...++..+=|+|++||||||+|+.++....
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~ 342 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLLP 342 (539)
T ss_pred eeEecCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33445677888999999999999999998774
No 490
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.99 E-value=0.005 Score=56.21 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=22.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.++|.||+|+|||++++.+++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 5789999999999999999998664
No 491
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.99 E-value=0.0068 Score=57.46 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=27.8
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+.+|.+++..+.|+||||+|||+++..++...
T Consensus 12 l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 12 LGGGIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred hCCCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 34688888999999999999999999998765
No 492
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.99 E-value=0.023 Score=61.65 Aligned_cols=72 Identities=21% Similarity=0.328 Sum_probs=44.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCC-CceEeeecc-c-----eecccCCHH--HHHHHHHHHHHcccccCceEEEEcc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLE-TPFAMISGS-E-----IFSLEMSKT--EALMQAFRKAIGVRIKEEAEVIEGE 137 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~-~p~~~i~~~-~-----~~~~e~~~~--~~l~~~~~~a~~~~~~~~~ii~~dE 137 (466)
..+|++||+|+||||+..++.+.++.. ..++.+... + +...++... .....+++.+... .|.+|+.||
T Consensus 317 Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~---dPDvI~vGE 393 (564)
T TIGR02538 317 GMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQ---DPDIIMVGE 393 (564)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceEEEeccccCCCHHHHHHHHhcc---CCCEEEeCC
Confidence 577899999999999999988887532 223222111 1 111122211 1345555555443 499999999
Q ss_pred eeee
Q 012326 138 VVEV 141 (466)
Q Consensus 138 id~~ 141 (466)
+.+-
T Consensus 394 iRd~ 397 (564)
T TIGR02538 394 IRDL 397 (564)
T ss_pred CCCH
Confidence 8874
No 493
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.98 E-value=0.0054 Score=56.99 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=22.1
Q ss_pred EEEecCCCCChHHHHHHHHHHcCC
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
|-|.||||+||||+|+.++..++.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 568999999999999999999974
No 494
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.043 Score=52.89 Aligned_cols=126 Identities=20% Similarity=0.218 Sum_probs=84.9
Q ss_pred cceeeeeccccc-----------cHHHHHHHHHHhhh-----cCCCe-EEEEeccceeEeecccccCCCCCChhHHhh--
Q 012326 290 PGVLFIDEVHML-----------DVECFSFLNRALEN-----EMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDR-- 350 (466)
Q Consensus 290 ~~vl~iDEi~~l-----------~~~~~~~L~~~le~-----~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR-- 350 (466)
.+++|+||+|.+ +.+.+..++.++.. +..++ ++++||+ |..|.++|++.
T Consensus 271 aciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnr------------pdtldpallrpgr 338 (435)
T KOG0729|consen 271 ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNR------------PDTLDPALLRPGR 338 (435)
T ss_pred eEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCC------------CCCcCHhhcCCcc
Confidence 579999999987 33667767666542 33456 8899998 88999998854
Q ss_pred h-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 351 L-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 351 ~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
+ ..++|.-++.+--..|++.+++.-.++=+- -.++|+.++.+...-..-..+.-|.-+|....++..|..|.-.+..
T Consensus 339 ldrkvef~lpdlegrt~i~kihaksmsverdi-r~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~ 416 (435)
T KOG0729|consen 339 LDRKVEFGLPDLEGRTHIFKIHAKSMSVERDI-RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVN 416 (435)
T ss_pred cccceeccCCcccccceeEEEeccccccccch-hHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH
Confidence 4 567888888888888888777654443221 2566777764322234444566677777666677778776655554
No 495
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.97 E-value=0.039 Score=63.24 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=23.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM 317 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~ 317 (466)
..|++|||+-+++...+..|++..+...
T Consensus 434 ~~vlIVDEASMv~~~~m~~LL~~a~~~g 461 (988)
T PRK13889 434 RDVLVIDEAGMVGTRQLERVLSHAADAG 461 (988)
T ss_pred CcEEEEECcccCCHHHHHHHHHhhhhCC
Confidence 4699999999999998888887765544
No 496
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.94 E-value=0.029 Score=49.55 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=43.8
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecc-ce-ecccCCHHHHHHHHHHHHHcccccCceEEEEcceee
Q 012326 63 KIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGS-EI-FSLEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVE 140 (466)
Q Consensus 63 ~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~-~~-~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~ 140 (466)
..++..+.|.||.|+|||++++.++.......--+.+++. .+ +-...+..+.-+-.+.++.- .+|.+++.||-.+
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~---~~p~illlDEP~~ 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLL---ENPNLLLLDEPTN 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHh---cCCCEEEEeCCcc
Confidence 3456888999999999999999999866422111112211 11 11114445533333333332 2599999999544
No 497
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.053 Score=56.49 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=26.9
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHcCCC
Q 012326 63 KIAGRAVLIAGQPGTGKTAIAMGMAKSLGLE 93 (466)
Q Consensus 63 ~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~ 93 (466)
-+|++.+-|+||+|.||+++.+.+.+..+..
T Consensus 561 v~pGktvAlVG~SGaGKSTimRlLfRffdv~ 591 (790)
T KOG0056|consen 561 VQPGKTVALVGPSGAGKSTIMRLLFRFFDVN 591 (790)
T ss_pred ecCCcEEEEECCCCCchhHHHHHHHHHhhcc
Confidence 3567899999999999999999999988743
No 498
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.91 E-value=0.0081 Score=55.10 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=24.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.+.||+|+||||+++.++..++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356789999999999999999999886
No 499
>PLN02165 adenylate isopentenyltransferase
Probab=95.90 E-value=0.0097 Score=59.77 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=24.6
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
+..++|.||+|+|||++|..+|+.++.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~ 69 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPS 69 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCC
Confidence 468999999999999999999999873
No 500
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.87 E-value=0.033 Score=59.29 Aligned_cols=72 Identities=15% Similarity=0.318 Sum_probs=43.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCC-CceEeeecc-cee-----cccCCHH--HHHHHHHHHHHcccccCceEEEEcc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLE-TPFAMISGS-EIF-----SLEMSKT--EALMQAFRKAIGVRIKEEAEVIEGE 137 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~-~p~~~i~~~-~~~-----~~e~~~~--~~l~~~~~~a~~~~~~~~~ii~~dE 137 (466)
..++++||+|+||||+.+++...+... ...+.+... ++. ...+... .....+++.+... .|.+|+.||
T Consensus 243 GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~---dPDvI~vGE 319 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQ---DPDIIMVGE 319 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhc---CCCEEEEeC
Confidence 467899999999999999888777532 223333221 111 1111111 1344444444433 599999999
Q ss_pred eeee
Q 012326 138 VVEV 141 (466)
Q Consensus 138 id~~ 141 (466)
+.+-
T Consensus 320 iRd~ 323 (486)
T TIGR02533 320 IRDL 323 (486)
T ss_pred CCCH
Confidence 8774
Done!