Query 012326
Match_columns 466
No_of_seqs 204 out of 2252
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c9o_A RUVB-like 1; hexameric 100.0 4.7E-59 1.6E-63 488.4 30.1 443 4-448 1-455 (456)
2 3uk6_A RUVB-like 2; hexameric 100.0 7.8E-42 2.7E-46 346.9 29.1 350 1-454 5-355 (368)
3 4b4t_J 26S protease regulatory 99.9 8.9E-25 3.1E-29 221.9 26.0 235 33-431 141-390 (405)
4 4b4t_I 26S protease regulatory 99.9 1.7E-24 5.9E-29 220.5 25.6 112 33-149 175-295 (437)
5 4b4t_H 26S protease regulatory 99.9 3.6E-24 1.2E-28 220.2 25.0 237 33-430 202-450 (467)
6 4b4t_L 26S protease subunit RP 99.9 3.7E-24 1.3E-28 220.5 25.0 237 33-430 174-422 (437)
7 3cf2_A TER ATPase, transitiona 99.9 7.9E-25 2.7E-29 240.2 21.1 195 33-255 197-407 (806)
8 4b4t_M 26S protease regulatory 99.9 2.9E-24 9.9E-29 221.1 23.0 112 33-149 174-294 (434)
9 4b4t_K 26S protease regulatory 99.9 6.7E-23 2.3E-27 210.8 24.9 231 33-428 165-412 (428)
10 3u61_B DNA polymerase accessor 99.9 9.9E-24 3.4E-28 210.3 15.7 120 290-428 106-235 (324)
11 3pfi_A Holliday junction ATP-d 99.9 3.4E-22 1.2E-26 200.2 25.7 219 26-430 16-254 (338)
12 1sxj_D Activator 1 41 kDa subu 99.9 4.9E-23 1.7E-27 206.8 18.2 126 290-428 134-261 (353)
13 3pvs_A Replication-associated 99.9 4.8E-23 1.6E-27 214.4 17.7 127 290-428 107-242 (447)
14 1sxj_C Activator 1 40 kDa subu 99.9 1.1E-22 3.7E-27 204.4 16.5 126 290-428 111-237 (340)
15 1iqp_A RFCS; clamp loader, ext 99.9 3.5E-22 1.2E-26 198.1 18.3 120 290-427 111-231 (327)
16 2chq_A Replication factor C sm 99.9 2.4E-22 8.2E-27 198.6 15.0 121 290-428 103-224 (319)
17 3eie_A Vacuolar protein sortin 99.9 9.3E-22 3.2E-26 196.3 19.4 210 35-410 13-235 (322)
18 2chg_A Replication factor C sm 99.9 2.5E-21 8.5E-26 180.1 20.1 121 290-428 103-224 (226)
19 1jr3_A DNA polymerase III subu 99.9 3.6E-21 1.2E-25 194.6 22.3 121 290-427 120-241 (373)
20 1hqc_A RUVB; extended AAA-ATPa 99.9 5.2E-21 1.8E-25 190.0 21.7 128 290-430 91-238 (324)
21 1sxj_B Activator 1 37 kDa subu 99.9 1.3E-21 4.5E-26 193.7 17.1 121 290-428 108-229 (323)
22 1sxj_E Activator 1 40 kDa subu 99.9 4E-21 1.4E-25 193.4 20.7 108 290-410 135-244 (354)
23 3h4m_A Proteasome-activating n 99.9 1.1E-20 3.8E-25 184.5 22.6 235 32-433 9-261 (285)
24 3vfd_A Spastin; ATPase, microt 99.9 1.3E-20 4.5E-25 192.8 22.7 234 28-429 104-364 (389)
25 1xwi_A SKD1 protein; VPS4B, AA 99.9 2.5E-20 8.4E-25 186.1 23.7 212 34-410 6-230 (322)
26 1g41_A Heat shock protein HSLU 99.9 5.9E-21 2E-25 196.9 19.6 336 38-429 13-432 (444)
27 2qp9_X Vacuolar protein sortin 99.9 1.4E-20 4.8E-25 190.4 20.5 211 35-411 46-269 (355)
28 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2E-20 6.8E-25 180.0 20.3 231 35-430 1-249 (262)
29 1njg_A DNA polymerase III subu 99.9 1.2E-20 4.3E-25 177.3 17.3 121 290-427 127-248 (250)
30 3cf2_A TER ATPase, transitiona 99.9 1.1E-21 3.8E-26 215.4 11.5 218 33-281 470-703 (806)
31 1sxj_A Activator 1 95 kDa subu 99.9 2.6E-21 9E-26 205.2 13.9 122 290-429 149-273 (516)
32 1in4_A RUVB, holliday junction 99.8 1.5E-19 5.1E-24 181.3 25.2 139 290-430 103-250 (334)
33 3syl_A Protein CBBX; photosynt 99.8 2.5E-20 8.4E-25 184.0 19.0 128 290-424 131-280 (309)
34 3b9p_A CG5977-PA, isoform A; A 99.8 1.7E-19 5.7E-24 177.3 23.8 233 29-429 11-271 (297)
35 1lv7_A FTSH; alpha/beta domain 99.8 6.7E-20 2.3E-24 176.6 20.3 234 30-430 3-252 (257)
36 3d8b_A Fidgetin-like protein 1 99.8 2.3E-19 8E-24 181.5 25.2 234 30-430 75-334 (357)
37 2v1u_A Cell division control p 99.8 6.2E-20 2.1E-24 185.8 20.7 150 290-448 131-296 (387)
38 3te6_A Regulatory protein SIR3 99.8 2.1E-20 7E-25 185.4 14.5 132 290-432 133-317 (318)
39 2ce7_A Cell division protein F 99.8 6.9E-19 2.4E-23 183.7 23.6 231 34-430 10-256 (476)
40 2qby_B CDC6 homolog 3, cell di 99.8 6.2E-19 2.1E-23 178.9 22.3 127 292-430 136-270 (384)
41 1fnn_A CDC6P, cell division co 99.8 3.8E-18 1.3E-22 173.1 28.0 132 290-430 126-274 (389)
42 3cf0_A Transitional endoplasmi 99.8 2.2E-19 7.6E-24 177.4 18.0 104 35-143 10-122 (301)
43 2zan_A Vacuolar protein sortin 99.8 2.6E-19 8.8E-24 186.4 17.5 212 34-410 128-352 (444)
44 2r44_A Uncharacterized protein 99.8 9.1E-19 3.1E-23 174.9 19.7 140 290-435 110-302 (331)
45 1ofh_A ATP-dependent HSL prote 99.8 5.2E-19 1.8E-23 174.1 17.1 131 290-428 117-297 (310)
46 3bos_A Putative DNA replicatio 99.8 1.2E-18 4E-23 164.7 18.2 129 290-428 105-241 (242)
47 1a5t_A Delta prime, HOLB; zinc 99.8 1.3E-18 4.4E-23 174.5 18.4 100 290-407 109-209 (334)
48 2r62_A Cell division protease 99.8 3.9E-20 1.3E-24 179.1 2.5 88 340-428 161-251 (268)
49 2z4s_A Chromosomal replication 99.8 1.7E-17 5.9E-22 172.4 21.8 132 290-431 195-333 (440)
50 2qby_A CDC6 homolog 1, cell di 99.8 1.3E-17 4.4E-22 168.5 20.4 132 290-430 129-272 (386)
51 1g8p_A Magnesium-chelatase 38 99.8 7.1E-18 2.4E-22 169.0 17.3 135 290-435 145-327 (350)
52 3hu3_A Transitional endoplasmi 99.8 1.4E-17 4.8E-22 174.9 19.0 226 38-430 202-459 (489)
53 1l8q_A Chromosomal replication 99.8 4.3E-17 1.5E-21 162.3 20.7 129 290-432 99-242 (324)
54 1ixz_A ATP-dependent metallopr 99.8 6.4E-17 2.2E-21 155.4 21.0 230 33-427 9-253 (254)
55 2dhr_A FTSH; AAA+ protein, hex 99.7 2.3E-17 7.7E-22 173.2 17.8 230 35-430 26-271 (499)
56 1um8_A ATP-dependent CLP prote 99.7 3.2E-17 1.1E-21 166.7 18.0 85 342-426 255-361 (376)
57 1iy2_A ATP-dependent metallopr 99.7 2.7E-16 9.2E-21 153.3 23.4 227 35-427 35-277 (278)
58 3m6a_A ATP-dependent protease 99.7 3.2E-17 1.1E-21 174.6 15.3 127 290-428 176-339 (543)
59 1ypw_A Transitional endoplasmi 99.7 1.7E-17 5.9E-22 184.3 12.4 156 37-214 201-365 (806)
60 4fcw_A Chaperone protein CLPB; 99.7 1.2E-16 4.2E-21 157.4 16.9 120 290-409 120-277 (311)
61 2gno_A DNA polymerase III, gam 99.7 5.6E-17 1.9E-21 160.4 13.5 92 290-405 83-175 (305)
62 2x8a_A Nuclear valosin-contain 99.7 2.3E-16 8E-21 153.7 16.6 211 34-278 4-235 (274)
63 3pxi_A Negative regulator of g 99.7 2.5E-16 8.5E-21 174.4 18.3 118 290-407 580-721 (758)
64 3hws_A ATP-dependent CLP prote 99.7 1.9E-16 6.4E-21 160.3 14.7 84 343-426 239-345 (363)
65 2bjv_A PSP operon transcriptio 99.7 4.9E-16 1.7E-20 150.1 16.4 126 290-423 101-250 (265)
66 1r6b_X CLPA protein; AAA+, N-t 99.7 4.8E-16 1.6E-20 172.1 18.0 119 290-408 558-713 (758)
67 1d2n_A N-ethylmaleimide-sensit 99.7 3.6E-16 1.2E-20 151.7 14.7 101 290-408 125-247 (272)
68 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 4.4E-16 1.5E-20 163.6 15.7 125 290-424 110-280 (500)
69 3pxg_A Negative regulator of g 99.7 7E-16 2.4E-20 161.5 16.4 109 290-414 268-389 (468)
70 1w5s_A Origin recognition comp 99.7 4.3E-15 1.5E-19 151.8 20.9 130 290-429 139-292 (412)
71 1ojl_A Transcriptional regulat 99.6 2.6E-15 8.8E-20 148.5 17.1 158 290-455 97-280 (304)
72 3k1j_A LON protease, ATP-depen 99.6 7.6E-15 2.6E-19 158.4 20.3 130 290-429 202-374 (604)
73 1qvr_A CLPB protein; coiled co 99.6 4.2E-15 1.4E-19 166.5 14.9 119 290-408 661-817 (854)
74 1r6b_X CLPA protein; AAA+, N-t 99.6 2.1E-14 7.3E-19 158.9 17.5 133 290-430 279-433 (758)
75 3t15_A Ribulose bisphosphate c 99.6 5.3E-14 1.8E-18 138.3 18.3 81 62-144 32-114 (293)
76 3pxi_A Negative regulator of g 99.6 2.8E-14 9.7E-19 157.9 16.3 108 290-413 268-388 (758)
77 3f9v_A Minichromosome maintena 99.6 8.6E-15 2.9E-19 157.3 11.5 144 290-433 392-590 (595)
78 1jr3_D DNA polymerase III, del 99.5 1.6E-14 5.5E-19 144.8 11.6 129 290-428 77-207 (343)
79 1jbk_A CLPB protein; beta barr 99.5 1.2E-14 4.2E-19 131.4 8.1 59 27-91 10-68 (195)
80 1qvr_A CLPB protein; coiled co 99.5 3.5E-14 1.2E-18 159.0 13.5 114 290-412 264-394 (854)
81 1ypw_A Transitional endoplasmi 99.5 3.2E-15 1.1E-19 166.0 2.4 180 34-238 471-659 (806)
82 2p65_A Hypothetical protein PF 99.4 1.9E-13 6.4E-18 123.3 7.6 59 27-91 10-68 (187)
83 3n70_A Transport activator; si 99.4 1.9E-12 6.3E-17 113.6 12.2 58 41-102 2-60 (145)
84 3f8t_A Predicted ATPase involv 99.3 4E-11 1.4E-15 123.2 19.1 143 290-434 301-487 (506)
85 3co5_A Putative two-component 99.3 2.1E-12 7.1E-17 113.1 7.9 56 41-102 5-60 (143)
86 3dzd_A Transcriptional regulat 99.3 8.7E-11 3E-15 119.0 17.0 116 290-410 223-361 (368)
87 2cqa_A RUVB-like 2; TIP48, TIP 99.3 4.3E-12 1.5E-16 100.7 5.6 94 122-216 2-95 (95)
88 1ny5_A Transcriptional regulat 99.3 2.3E-10 7.7E-15 116.7 19.5 127 290-424 232-381 (387)
89 2qen_A Walker-type ATPase; unk 99.1 1.4E-08 4.7E-13 100.7 21.1 109 290-403 129-246 (350)
90 2fna_A Conserved hypothetical 98.9 3.4E-08 1.2E-12 97.9 17.1 109 290-405 138-252 (357)
91 3ec2_A DNA replication protein 98.8 1.5E-07 5E-12 84.9 16.9 59 31-90 2-62 (180)
92 1u0j_A DNA replication protein 98.8 2.1E-08 7.2E-13 96.3 11.5 38 54-91 91-129 (267)
93 2kjq_A DNAA-related protein; s 98.6 2E-07 6.8E-12 81.9 10.1 26 65-90 35-60 (149)
94 2w58_A DNAI, primosome compone 98.5 8.3E-08 2.8E-12 88.0 5.6 109 26-141 12-127 (202)
95 1tue_A Replication protein E1; 98.5 3.2E-07 1.1E-11 84.5 8.6 32 60-91 52-83 (212)
96 4akg_A Glutathione S-transfera 98.4 2.7E-07 9.3E-12 112.6 9.2 72 290-373 1337-1432(2695)
97 4akg_A Glutathione S-transfera 98.2 2.1E-05 7.1E-10 96.3 18.5 109 291-410 699-840 (2695)
98 4a1f_A DNAB helicase, replicat 98.1 1.9E-05 6.5E-10 78.5 11.3 66 56-126 36-101 (338)
99 3cmw_A Protein RECA, recombina 98.0 1E-05 3.4E-10 95.1 8.1 106 37-145 1017-1176(1706)
100 3bh0_A DNAB-like replicative h 97.9 0.0002 6.8E-09 70.5 15.7 65 56-125 58-122 (315)
101 2qgz_A Helicase loader, putati 97.9 1.4E-05 4.7E-10 78.6 6.0 64 27-91 112-177 (308)
102 2q6t_A DNAB replication FORK h 97.8 0.00015 5.2E-09 74.8 12.6 66 56-125 190-255 (444)
103 3bgw_A DNAB-like replicative h 97.8 0.00038 1.3E-08 71.8 15.2 65 56-125 187-251 (444)
104 1z6t_A APAF-1, apoptotic prote 97.7 0.00066 2.3E-08 72.2 17.4 46 40-88 124-169 (591)
105 1ye8_A Protein THEP1, hypothet 97.7 9.8E-05 3.4E-09 66.5 9.3 70 290-370 100-174 (178)
106 2vhj_A Ntpase P4, P4; non- hyd 97.7 2.7E-05 9.2E-10 76.6 5.8 80 61-145 118-198 (331)
107 3vkg_A Dynein heavy chain, cyt 97.7 4.6E-05 1.6E-09 94.0 8.9 116 290-409 1375-1526(3245)
108 2r6a_A DNAB helicase, replicat 97.7 0.00026 8.9E-09 73.3 12.5 66 56-125 193-258 (454)
109 3vkg_A Dynein heavy chain, cyt 97.6 0.0014 4.9E-08 81.2 19.6 108 292-410 659-800 (3245)
110 2r2a_A Uncharacterized protein 97.6 3.8E-05 1.3E-09 70.6 4.5 57 290-358 88-152 (199)
111 2a5y_B CED-4; apoptosis; HET: 97.6 0.0024 8.3E-08 67.5 19.1 44 43-88 131-174 (549)
112 3upu_A ATP-dependent DNA helic 97.6 9.5E-05 3.3E-09 76.6 7.2 60 26-91 11-70 (459)
113 3sfz_A APAF-1, apoptotic pepti 97.5 0.0016 5.5E-08 74.8 17.4 47 40-89 124-170 (1249)
114 2orw_A Thymidine kinase; TMTK, 97.5 0.00026 8.7E-09 64.1 7.8 54 290-351 77-130 (184)
115 1qhx_A CPT, protein (chloramph 97.3 0.00017 5.9E-09 64.0 5.1 33 66-100 3-35 (178)
116 3trf_A Shikimate kinase, SK; a 97.3 0.00017 6E-09 64.5 4.5 30 66-97 5-34 (185)
117 3vaa_A Shikimate kinase, SK; s 97.2 0.00027 9.1E-09 64.4 4.6 31 65-97 24-54 (199)
118 2rhm_A Putative kinase; P-loop 97.1 0.00035 1.2E-08 62.7 4.8 27 65-91 4-30 (193)
119 3tlx_A Adenylate kinase 2; str 97.1 0.00044 1.5E-08 65.3 5.6 39 65-107 28-66 (243)
120 1gvn_B Zeta; postsegregational 97.1 0.00087 3E-08 65.0 7.6 54 46-101 10-66 (287)
121 2p5t_B PEZT; postsegregational 97.1 0.00073 2.5E-08 64.1 6.9 55 48-104 11-68 (253)
122 1zuh_A Shikimate kinase; alpha 97.1 0.00038 1.3E-08 61.3 4.4 29 67-97 8-36 (168)
123 3kb2_A SPBC2 prophage-derived 97.1 0.00042 1.4E-08 60.8 4.5 29 67-97 2-30 (173)
124 1via_A Shikimate kinase; struc 97.0 0.00037 1.3E-08 61.9 4.0 29 67-97 5-33 (175)
125 1kag_A SKI, shikimate kinase I 97.0 0.00042 1.4E-08 61.1 4.3 25 67-91 5-29 (173)
126 3umf_A Adenylate kinase; rossm 97.0 0.00029 9.8E-09 65.6 3.2 41 65-109 28-68 (217)
127 2b8t_A Thymidine kinase; deoxy 97.0 0.0024 8.2E-08 59.6 9.5 26 65-90 11-36 (223)
128 3iij_A Coilin-interacting nucl 97.0 0.00045 1.5E-08 61.6 4.2 26 66-91 11-36 (180)
129 2iyv_A Shikimate kinase, SK; t 97.0 0.00048 1.6E-08 61.6 4.3 29 67-97 3-31 (184)
130 1y63_A LMAJ004144AAA protein; 97.0 0.00048 1.7E-08 61.9 4.2 30 66-97 10-40 (184)
131 3e1s_A Exodeoxyribonuclease V, 97.0 0.0071 2.4E-07 64.3 13.9 26 66-91 204-229 (574)
132 3cmu_A Protein RECA, recombina 96.9 0.00093 3.2E-08 79.7 6.9 82 61-144 1422-1520(2050)
133 3sr0_A Adenylate kinase; phosp 96.9 0.00038 1.3E-08 64.2 2.9 37 68-108 2-38 (206)
134 1tev_A UMP-CMP kinase; ploop, 96.9 0.00061 2.1E-08 61.0 4.2 26 66-91 3-28 (196)
135 3be4_A Adenylate kinase; malar 96.9 0.00064 2.2E-08 62.8 4.3 30 66-97 5-34 (217)
136 1zp6_A Hypothetical protein AT 96.9 0.00055 1.9E-08 61.5 3.7 37 64-102 7-43 (191)
137 1knq_A Gluconate kinase; ALFA/ 96.9 0.00076 2.6E-08 59.7 4.6 28 64-91 6-33 (175)
138 2vli_A Antibiotic resistance p 96.9 0.0006 2.1E-08 60.7 3.8 30 66-97 5-34 (183)
139 2cdn_A Adenylate kinase; phosp 96.9 0.00075 2.6E-08 61.3 4.5 30 66-97 20-49 (201)
140 3cm0_A Adenylate kinase; ATP-b 96.9 0.00059 2E-08 60.9 3.7 26 66-91 4-29 (186)
141 2c95_A Adenylate kinase 1; tra 96.8 0.00074 2.5E-08 60.7 4.2 26 66-91 9-34 (196)
142 1q57_A DNA primase/helicase; d 96.8 0.0014 4.7E-08 68.6 6.8 67 56-126 232-298 (503)
143 1aky_A Adenylate kinase; ATP:A 96.8 0.00089 3E-08 61.8 4.7 26 66-91 4-29 (220)
144 1e6c_A Shikimate kinase; phosp 96.8 0.00076 2.6E-08 59.4 4.0 29 67-97 3-31 (173)
145 2pez_A Bifunctional 3'-phospho 96.8 0.0011 3.8E-08 58.9 4.9 35 65-101 4-41 (179)
146 1ly1_A Polynucleotide kinase; 96.8 0.00068 2.3E-08 60.0 3.4 25 67-91 3-28 (181)
147 2ze6_A Isopentenyl transferase 96.8 0.00092 3.1E-08 63.5 4.5 30 67-98 2-31 (253)
148 3lw7_A Adenylate kinase relate 96.8 0.00096 3.3E-08 58.3 4.3 24 67-91 2-25 (179)
149 2zts_A Putative uncharacterize 96.8 0.00097 3.3E-08 62.2 4.5 54 60-119 24-79 (251)
150 1kht_A Adenylate kinase; phosp 96.8 0.00065 2.2E-08 60.7 3.1 26 66-91 3-28 (192)
151 2iut_A DNA translocase FTSK; n 96.8 0.016 5.6E-07 61.1 14.2 68 290-369 344-420 (574)
152 3dl0_A Adenylate kinase; phosp 96.7 0.00099 3.4E-08 61.2 4.2 24 68-91 2-25 (216)
153 2bwj_A Adenylate kinase 5; pho 96.7 0.00098 3.4E-08 60.0 4.1 26 66-91 12-37 (199)
154 1qf9_A UMP/CMP kinase, protein 96.7 0.001 3.5E-08 59.5 4.0 25 67-91 7-31 (194)
155 3t61_A Gluconokinase; PSI-biol 96.7 0.0011 3.7E-08 60.3 4.2 25 67-91 19-43 (202)
156 4eun_A Thermoresistant glucoki 96.7 0.0015 5E-08 59.4 4.9 27 65-91 28-54 (200)
157 3fb4_A Adenylate kinase; psych 96.7 0.0013 4.3E-08 60.4 4.5 24 68-91 2-25 (216)
158 1ak2_A Adenylate kinase isoenz 96.7 0.0013 4.4E-08 61.4 4.5 29 67-97 17-45 (233)
159 2pt5_A Shikimate kinase, SK; a 96.7 0.0013 4.4E-08 57.6 4.3 28 68-97 2-29 (168)
160 1zd8_A GTP:AMP phosphotransfer 96.6 0.0012 4.2E-08 61.2 4.2 26 66-91 7-32 (227)
161 1svm_A Large T antigen; AAA+ f 96.6 0.0022 7.4E-08 64.7 6.2 38 54-91 157-194 (377)
162 2plr_A DTMP kinase, probable t 96.6 0.0012 4.2E-08 59.9 4.0 27 66-92 4-30 (213)
163 1ukz_A Uridylate kinase; trans 96.6 0.0015 5.3E-08 59.2 4.4 25 67-91 16-40 (203)
164 1zak_A Adenylate kinase; ATP:A 96.6 0.0011 3.8E-08 61.2 3.4 26 66-91 5-30 (222)
165 1kgd_A CASK, peripheral plasma 96.6 0.0015 5E-08 58.5 4.1 28 64-91 3-30 (180)
166 2fz4_A DNA repair protein RAD2 96.6 0.0082 2.8E-07 56.2 9.4 25 67-91 109-133 (237)
167 3crm_A TRNA delta(2)-isopenten 96.5 0.0017 5.8E-08 64.0 4.5 35 67-103 6-40 (323)
168 1nks_A Adenylate kinase; therm 96.5 0.0012 4.2E-08 58.8 3.2 25 67-91 2-26 (194)
169 2cvh_A DNA repair and recombin 96.5 0.0019 6.4E-08 59.0 4.4 33 56-88 9-42 (220)
170 2qor_A Guanylate kinase; phosp 96.5 0.0016 5.3E-08 59.5 3.8 27 65-91 11-37 (204)
171 2dr3_A UPF0273 protein PH0284; 96.5 0.0016 5.4E-08 60.6 3.9 31 60-90 17-47 (247)
172 3uie_A Adenylyl-sulfate kinase 96.5 0.0016 5.5E-08 59.2 3.8 27 65-91 24-50 (200)
173 3nwj_A ATSK2; P loop, shikimat 96.5 0.002 6.9E-08 61.2 4.5 30 66-97 48-77 (250)
174 1w36_D RECD, exodeoxyribonucle 96.4 0.015 5.1E-07 62.3 11.7 25 66-90 164-188 (608)
175 1cke_A CK, MSSA, protein (cyti 96.4 0.0021 7E-08 59.3 4.3 25 67-91 6-30 (227)
176 1e4v_A Adenylate kinase; trans 96.4 0.0021 7E-08 59.1 4.2 24 68-91 2-25 (214)
177 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0018 6.1E-08 59.5 3.8 35 56-90 12-47 (235)
178 3cmw_A Protein RECA, recombina 96.4 0.012 4.2E-07 69.4 11.2 30 62-91 728-757 (1706)
179 4b4t_J 26S protease regulatory 96.3 0.004 1.4E-07 63.1 6.1 79 183-273 281-366 (405)
180 2wwf_A Thymidilate kinase, put 96.3 0.0015 5.3E-08 59.4 2.8 26 66-91 10-35 (212)
181 2bbw_A Adenylate kinase 4, AK4 96.3 0.0024 8.4E-08 60.0 4.2 27 66-92 27-53 (246)
182 2v54_A DTMP kinase, thymidylat 96.3 0.0027 9.2E-08 57.4 4.3 25 66-90 4-28 (204)
183 2jaq_A Deoxyguanosine kinase; 96.3 0.0022 7.7E-08 57.8 3.7 24 68-91 2-25 (205)
184 2xb4_A Adenylate kinase; ATP-b 96.3 0.0026 9E-08 58.9 4.1 24 68-91 2-25 (223)
185 1n0w_A DNA repair protein RAD5 96.3 0.0019 6.5E-08 60.0 3.2 31 60-90 18-48 (243)
186 2pbr_A DTMP kinase, thymidylat 96.3 0.0032 1.1E-07 56.2 4.4 23 68-90 2-24 (195)
187 2yvu_A Probable adenylyl-sulfa 96.3 0.0027 9.2E-08 56.8 3.9 27 65-91 12-38 (186)
188 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0036 1.2E-07 59.5 4.9 25 66-90 4-28 (260)
189 3c8u_A Fructokinase; YP_612366 96.2 0.0035 1.2E-07 57.3 4.7 36 56-91 12-47 (208)
190 2x8a_A Nuclear valosin-contain 96.2 0.022 7.6E-07 54.5 10.4 127 290-428 104-262 (274)
191 1cr0_A DNA primase/helicase; R 96.2 0.0036 1.2E-07 60.5 4.8 36 56-91 25-60 (296)
192 2z0h_A DTMP kinase, thymidylat 96.2 0.0035 1.2E-07 56.2 4.4 23 68-90 2-24 (197)
193 2ius_A DNA translocase FTSK; n 96.2 0.051 1.7E-06 56.7 13.7 68 291-370 299-375 (512)
194 1nn5_A Similar to deoxythymidy 96.2 0.0028 9.5E-08 57.7 3.6 26 66-91 9-34 (215)
195 2if2_A Dephospho-COA kinase; a 96.2 0.0034 1.2E-07 56.9 4.1 27 68-97 3-29 (204)
196 3ake_A Cytidylate kinase; CMP 96.2 0.0039 1.3E-07 56.4 4.5 28 68-97 4-31 (208)
197 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0058 2E-07 60.8 6.0 28 67-96 25-52 (359)
198 3tau_A Guanylate kinase, GMP k 96.2 0.0029 9.8E-08 58.0 3.6 27 65-91 7-33 (208)
199 2j41_A Guanylate kinase; GMP, 96.1 0.0028 9.6E-08 57.3 3.5 26 65-90 5-30 (207)
200 3a8t_A Adenylate isopentenyltr 96.1 0.0027 9.3E-08 62.8 3.5 25 67-91 41-65 (339)
201 3foz_A TRNA delta(2)-isopenten 96.1 0.0039 1.3E-07 60.9 4.3 26 66-91 10-35 (316)
202 3r20_A Cytidylate kinase; stru 96.1 0.0042 1.4E-07 58.3 4.3 25 67-91 10-34 (233)
203 3hr8_A Protein RECA; alpha and 96.0 0.0034 1.2E-07 62.7 3.7 30 61-90 56-85 (356)
204 4a74_A DNA repair and recombin 96.0 0.003 1E-07 58.1 3.1 32 60-91 19-50 (231)
205 1jjv_A Dephospho-COA kinase; P 96.0 0.0035 1.2E-07 57.0 3.5 28 67-97 3-30 (206)
206 3tr0_A Guanylate kinase, GMP k 96.0 0.0041 1.4E-07 56.2 3.9 26 65-90 6-31 (205)
207 2pt7_A CAG-ALFA; ATPase, prote 96.0 0.0048 1.6E-07 61.0 4.6 73 65-140 170-251 (330)
208 2zr9_A Protein RECA, recombina 96.0 0.004 1.4E-07 62.1 3.8 30 61-90 56-85 (349)
209 1ex7_A Guanylate kinase; subst 96.0 0.0041 1.4E-07 56.3 3.5 25 67-91 2-26 (186)
210 2grj_A Dephospho-COA kinase; T 95.9 0.005 1.7E-07 55.9 4.1 29 67-97 13-41 (192)
211 4e22_A Cytidylate kinase; P-lo 95.9 0.0059 2E-07 57.7 4.6 27 65-91 26-52 (252)
212 2bdt_A BH3686; alpha-beta prot 95.9 0.0036 1.2E-07 56.0 3.0 24 67-90 3-26 (189)
213 1uf9_A TT1252 protein; P-loop, 95.9 0.005 1.7E-07 55.4 3.9 29 66-97 8-36 (203)
214 1m7g_A Adenylylsulfate kinase; 95.9 0.0052 1.8E-07 56.3 4.0 27 65-91 24-50 (211)
215 1u94_A RECA protein, recombina 95.9 0.0049 1.7E-07 61.6 4.1 30 61-90 58-87 (356)
216 3ney_A 55 kDa erythrocyte memb 95.8 0.006 2.1E-07 55.7 4.2 27 65-91 18-44 (197)
217 2ehv_A Hypothetical protein PH 95.8 0.0043 1.5E-07 57.8 3.3 29 60-88 24-52 (251)
218 3exa_A TRNA delta(2)-isopenten 95.8 0.0055 1.9E-07 60.0 4.1 25 67-91 4-28 (322)
219 2z43_A DNA repair and recombin 95.8 0.0042 1.4E-07 61.1 3.3 31 61-91 102-132 (324)
220 2h92_A Cytidylate kinase; ross 95.8 0.0068 2.3E-07 55.5 4.3 29 67-97 4-32 (219)
221 1v5w_A DMC1, meiotic recombina 95.8 0.0058 2E-07 60.7 4.0 30 61-90 117-146 (343)
222 1q3t_A Cytidylate kinase; nucl 95.8 0.0074 2.5E-07 56.3 4.5 27 65-91 15-41 (236)
223 3nh6_A ATP-binding cassette SU 95.7 0.059 2E-06 52.5 11.1 28 64-91 78-105 (306)
224 3a00_A Guanylate kinase, GMP k 95.7 0.0059 2E-07 54.7 3.6 25 67-91 2-26 (186)
225 1taf_A TFIID TBP associated fa 95.7 0.028 9.7E-07 41.9 6.6 60 367-430 6-66 (68)
226 1lvg_A Guanylate kinase, GMP k 95.7 0.0058 2E-07 55.5 3.4 27 65-91 3-29 (198)
227 1xp8_A RECA protein, recombina 95.7 0.006 2.1E-07 61.2 3.8 30 61-90 69-98 (366)
228 2oap_1 GSPE-2, type II secreti 95.7 0.0078 2.7E-07 63.1 4.8 73 65-140 259-344 (511)
229 1vht_A Dephospho-COA kinase; s 95.7 0.0074 2.5E-07 55.3 4.1 28 67-97 5-32 (218)
230 1nlf_A Regulatory protein REPA 95.6 0.0054 1.9E-07 58.7 3.2 29 62-90 26-54 (279)
231 2i1q_A DNA repair and recombin 95.6 0.0059 2E-07 59.8 3.5 30 61-90 93-122 (322)
232 1uj2_A Uridine-cytidine kinase 95.6 0.007 2.4E-07 57.1 3.8 25 67-91 23-47 (252)
233 2qmh_A HPR kinase/phosphorylas 95.6 0.0056 1.9E-07 55.9 2.9 26 66-91 34-59 (205)
234 2v9p_A Replication protein E1; 95.6 0.012 3.9E-07 57.6 5.3 36 55-90 115-150 (305)
235 4b3f_X DNA-binding protein smu 95.6 0.012 4.1E-07 63.5 5.9 39 45-90 191-230 (646)
236 1rz3_A Hypothetical protein rb 95.5 0.017 5.8E-07 52.4 5.9 26 65-90 21-46 (201)
237 1ltq_A Polynucleotide kinase; 95.5 0.0071 2.4E-07 58.3 3.5 24 67-90 3-26 (301)
238 3eph_A TRNA isopentenyltransfe 95.5 0.0087 3E-07 60.6 4.1 26 66-91 2-27 (409)
239 3d3q_A TRNA delta(2)-isopenten 95.5 0.0092 3.1E-07 59.1 4.2 25 67-91 8-32 (340)
240 1odf_A YGR205W, hypothetical 3 95.4 0.019 6.6E-07 55.5 6.4 27 65-91 30-56 (290)
241 2qt1_A Nicotinamide riboside k 95.4 0.0068 2.3E-07 55.1 2.9 25 66-90 21-45 (207)
242 1pzn_A RAD51, DNA repair and r 95.4 0.008 2.7E-07 59.8 3.6 32 60-91 125-156 (349)
243 3io5_A Recombination and repai 95.4 0.0093 3.2E-07 58.4 4.0 29 61-90 24-52 (333)
244 1htw_A HI0065; nucleotide-bind 95.4 0.018 6.1E-07 50.5 5.4 35 56-90 23-57 (158)
245 3asz_A Uridine kinase; cytidin 95.3 0.0088 3E-07 54.4 3.3 27 65-91 5-31 (211)
246 4eaq_A DTMP kinase, thymidylat 95.3 0.01 3.6E-07 55.2 3.8 27 65-91 25-51 (229)
247 3zvl_A Bifunctional polynucleo 95.3 0.0082 2.8E-07 61.2 3.3 26 66-91 258-283 (416)
248 3cmu_A Protein RECA, recombina 95.3 0.015 5.2E-07 69.5 5.9 87 57-143 721-824 (2050)
249 1g5t_A COB(I)alamin adenosyltr 95.3 0.14 4.9E-06 46.4 11.1 25 66-90 28-52 (196)
250 4gp7_A Metallophosphoesterase; 95.2 0.0097 3.3E-07 52.6 3.1 22 65-86 8-29 (171)
251 2eyu_A Twitching motility prot 95.2 0.013 4.5E-07 55.8 4.2 29 63-91 22-50 (261)
252 3aez_A Pantothenate kinase; tr 95.2 0.019 6.6E-07 56.1 5.5 28 64-91 88-115 (312)
253 3fdi_A Uncharacterized protein 95.2 0.015 5.2E-07 53.0 4.4 29 67-97 7-35 (201)
254 3lda_A DNA repair protein RAD5 95.2 0.0084 2.9E-07 60.8 2.9 31 60-90 172-202 (400)
255 1z6g_A Guanylate kinase; struc 95.2 0.012 4.1E-07 54.3 3.7 27 64-90 21-47 (218)
256 1znw_A Guanylate kinase, GMP k 95.2 0.013 4.5E-07 53.4 3.9 27 65-91 19-45 (207)
257 2f6r_A COA synthase, bifunctio 95.1 0.012 4.2E-07 56.6 3.8 24 67-91 76-99 (281)
258 4a82_A Cystic fibrosis transme 95.1 0.1 3.5E-06 55.4 11.3 28 64-91 365-392 (578)
259 3b5x_A Lipid A export ATP-bind 95.1 0.11 3.8E-06 55.1 11.5 36 56-91 359-394 (582)
260 4f4c_A Multidrug resistance pr 95.1 0.06 2.1E-06 62.8 10.1 28 64-91 442-469 (1321)
261 3tqc_A Pantothenate kinase; bi 95.1 0.031 1.1E-06 54.9 6.6 25 67-91 93-117 (321)
262 1s96_A Guanylate kinase, GMP k 95.1 0.014 4.8E-07 54.0 3.9 28 64-91 14-41 (219)
263 4b4t_K 26S protease regulatory 95.0 0.021 7.1E-07 58.4 5.3 78 184-273 306-391 (428)
264 2ged_A SR-beta, signal recogni 95.0 0.022 7.6E-07 50.5 4.9 45 46-90 27-72 (193)
265 3b60_A Lipid A export ATP-bind 95.0 0.22 7.5E-06 52.8 13.4 28 64-91 367-394 (582)
266 3qf4_A ABC transporter, ATP-bi 95.0 0.17 5.7E-06 53.8 12.4 28 64-91 367-394 (587)
267 2jeo_A Uridine-cytidine kinase 94.9 0.015 5.3E-07 54.4 3.9 27 65-91 24-50 (245)
268 1gtv_A TMK, thymidylate kinase 94.9 0.0062 2.1E-07 55.4 1.0 24 68-91 2-25 (214)
269 2i3b_A HCR-ntpase, human cance 94.8 0.016 5.6E-07 52.3 3.6 24 67-90 2-25 (189)
270 3lnc_A Guanylate kinase, GMP k 94.8 0.011 3.6E-07 54.9 2.3 26 65-90 26-52 (231)
271 1sky_E F1-ATPase, F1-ATP synth 94.8 0.072 2.5E-06 54.9 8.6 34 56-90 142-175 (473)
272 1c9k_A COBU, adenosylcobinamid 94.8 0.017 5.9E-07 51.8 3.5 35 69-106 2-36 (180)
273 3p32_A Probable GTPase RV1496/ 94.8 0.04 1.4E-06 54.8 6.5 25 66-90 79-103 (355)
274 3b9q_A Chloroplast SRP recepto 94.8 0.048 1.6E-06 53.0 6.9 27 65-91 99-125 (302)
275 3qf4_B Uncharacterized ABC tra 94.7 0.14 4.6E-06 54.7 10.9 29 63-91 378-406 (598)
276 1x6v_B Bifunctional 3'-phospho 94.7 0.024 8.3E-07 60.6 5.0 35 65-101 51-88 (630)
277 2r8r_A Sensor protein; KDPD, P 94.7 0.018 6.1E-07 53.6 3.5 100 290-396 85-197 (228)
278 3gmt_A Adenylate kinase; ssgci 94.7 0.022 7.5E-07 53.2 4.0 28 68-97 10-37 (230)
279 3tqf_A HPR(Ser) kinase; transf 94.6 0.018 6.2E-07 51.3 3.2 23 66-88 16-38 (181)
280 3jvv_A Twitching mobility prot 94.5 0.02 6.7E-07 57.2 3.6 27 65-91 122-148 (356)
281 3kl4_A SRP54, signal recogniti 94.5 0.047 1.6E-06 55.8 6.4 26 66-91 97-122 (433)
282 3e2i_A Thymidine kinase; Zn-bi 94.5 0.051 1.7E-06 50.1 5.9 34 290-324 102-135 (219)
283 2ewv_A Twitching motility prot 94.4 0.022 7.6E-07 57.1 3.7 28 64-91 134-161 (372)
284 2og2_A Putative signal recogni 94.4 0.064 2.2E-06 53.5 7.0 27 65-91 156-182 (359)
285 1vma_A Cell division protein F 94.4 0.024 8.1E-07 55.4 3.8 26 66-91 104-129 (306)
286 3lv8_A DTMP kinase, thymidylat 94.4 0.023 8E-07 53.2 3.6 29 63-91 24-52 (236)
287 4edh_A DTMP kinase, thymidylat 94.4 0.025 8.5E-07 52.1 3.7 28 65-92 5-32 (213)
288 2v3c_C SRP54, signal recogniti 94.4 0.057 2E-06 55.2 6.7 25 66-90 99-123 (432)
289 4f4c_A Multidrug resistance pr 94.3 0.14 4.6E-06 59.8 10.6 28 64-91 1103-1130(1321)
290 1rj9_A FTSY, signal recognitio 94.3 0.028 9.6E-07 54.8 4.1 27 65-91 101-127 (304)
291 3e70_C DPA, signal recognition 94.3 0.057 1.9E-06 53.2 6.3 27 65-91 128-154 (328)
292 2px0_A Flagellar biosynthesis 94.1 0.027 9.2E-07 54.7 3.5 27 65-91 104-130 (296)
293 1np6_A Molybdopterin-guanine d 94.1 0.033 1.1E-06 49.6 3.8 24 67-90 7-30 (174)
294 2wsm_A Hydrogenase expression/ 94.1 0.053 1.8E-06 49.3 5.4 25 67-91 31-55 (221)
295 3hdt_A Putative kinase; struct 94.1 0.03 1E-06 52.0 3.7 29 67-97 15-43 (223)
296 1xjc_A MOBB protein homolog; s 94.1 0.031 1.1E-06 49.6 3.6 25 67-91 5-29 (169)
297 2ocp_A DGK, deoxyguanosine kin 94.1 0.028 9.4E-07 52.4 3.5 26 66-91 2-27 (241)
298 1sq5_A Pantothenate kinase; P- 94.1 0.045 1.5E-06 53.2 5.1 27 65-91 79-105 (308)
299 2gk6_A Regulator of nonsense t 94.1 0.043 1.5E-06 58.9 5.3 38 45-90 182-219 (624)
300 1g8f_A Sulfate adenylyltransfe 94.1 0.034 1.2E-06 58.1 4.3 27 66-92 395-421 (511)
301 2gza_A Type IV secretion syste 94.0 0.031 1E-06 55.8 3.8 27 65-91 174-200 (361)
302 2dyk_A GTP-binding protein; GT 94.0 0.031 1.1E-06 47.6 3.4 23 67-89 2-24 (161)
303 3dm5_A SRP54, signal recogniti 94.0 0.071 2.4E-06 54.6 6.4 26 66-91 100-125 (443)
304 2axn_A 6-phosphofructo-2-kinas 93.9 0.03 1E-06 58.8 3.6 25 67-91 36-60 (520)
305 1p9r_A General secretion pathw 93.8 0.034 1.2E-06 56.6 3.8 29 64-92 165-193 (418)
306 3v9p_A DTMP kinase, thymidylat 93.7 0.033 1.1E-06 51.9 3.1 27 65-91 24-50 (227)
307 2hf9_A Probable hydrogenase ni 93.7 0.082 2.8E-06 48.2 5.8 25 67-91 39-63 (226)
308 2qm8_A GTPase/ATPase; G protei 93.6 0.062 2.1E-06 53.1 5.1 35 56-90 45-79 (337)
309 1a7j_A Phosphoribulokinase; tr 93.6 0.021 7.2E-07 55.2 1.6 39 67-105 6-45 (290)
310 3tmk_A Thymidylate kinase; pho 93.6 0.043 1.5E-06 50.7 3.6 27 66-92 5-31 (216)
311 1nrj_B SR-beta, signal recogni 93.6 0.045 1.5E-06 49.6 3.7 25 66-90 12-36 (218)
312 1p5z_B DCK, deoxycytidine kina 93.6 0.019 6.5E-07 54.3 1.2 26 66-91 24-49 (263)
313 1z2a_A RAS-related protein RAB 93.5 0.043 1.5E-06 47.0 3.4 23 67-89 6-28 (168)
314 1kao_A RAP2A; GTP-binding prot 93.4 0.046 1.6E-06 46.6 3.4 23 67-89 4-26 (167)
315 1xwi_A SKD1 protein; VPS4B, AA 93.4 0.24 8.1E-06 48.4 8.9 76 188-277 148-231 (322)
316 3kta_A Chromosome segregation 93.4 0.054 1.8E-06 47.8 3.9 25 67-91 27-51 (182)
317 2f9l_A RAB11B, member RAS onco 93.4 0.042 1.4E-06 49.2 3.2 24 67-90 6-29 (199)
318 3tif_A Uncharacterized ABC tra 93.4 0.04 1.4E-06 51.5 3.1 28 64-91 29-56 (235)
319 1oix_A RAS-related protein RAB 93.4 0.04 1.4E-06 49.2 3.0 24 67-90 30-53 (191)
320 2pcj_A ABC transporter, lipopr 93.4 0.037 1.3E-06 51.3 2.8 27 65-91 29-55 (224)
321 2ce2_X GTPase HRAS; signaling 93.3 0.045 1.5E-06 46.5 3.2 23 67-89 4-26 (166)
322 2cbz_A Multidrug resistance-as 93.3 0.041 1.4E-06 51.5 3.1 27 64-90 29-55 (237)
323 2yhs_A FTSY, cell division pro 93.3 0.098 3.4E-06 54.3 6.1 27 65-91 292-318 (503)
324 1bif_A 6-phosphofructo-2-kinas 93.3 0.045 1.6E-06 56.5 3.6 25 67-91 40-64 (469)
325 2wjy_A Regulator of nonsense t 93.3 0.07 2.4E-06 58.9 5.3 24 67-90 372-395 (800)
326 1ek0_A Protein (GTP-binding pr 93.2 0.051 1.7E-06 46.5 3.4 23 67-89 4-26 (170)
327 2zej_A Dardarin, leucine-rich 93.2 0.038 1.3E-06 48.8 2.6 21 68-88 4-24 (184)
328 1u8z_A RAS-related protein RAL 93.2 0.051 1.8E-06 46.3 3.4 23 67-89 5-27 (168)
329 3b85_A Phosphate starvation-in 93.2 0.051 1.7E-06 49.8 3.5 25 65-89 21-45 (208)
330 4tmk_A Protein (thymidylate ki 93.2 0.053 1.8E-06 49.9 3.6 26 66-91 3-28 (213)
331 2wji_A Ferrous iron transport 93.2 0.046 1.6E-06 47.3 3.0 22 67-88 4-25 (165)
332 1h65_A Chloroplast outer envel 93.2 0.096 3.3E-06 49.6 5.5 42 47-88 20-61 (270)
333 2nzj_A GTP-binding protein REM 93.2 0.05 1.7E-06 47.0 3.3 22 67-88 5-26 (175)
334 1z0j_A RAB-22, RAS-related pro 93.2 0.054 1.8E-06 46.5 3.4 24 67-90 7-30 (170)
335 1wms_A RAB-9, RAB9, RAS-relate 93.2 0.054 1.8E-06 47.0 3.4 23 67-89 8-30 (177)
336 2ce7_A Cell division protein F 93.2 0.25 8.5E-06 51.1 8.9 61 189-255 154-221 (476)
337 1zu4_A FTSY; GTPase, signal re 93.1 0.053 1.8E-06 53.2 3.7 27 65-91 104-130 (320)
338 1tf7_A KAIC; homohexamer, hexa 93.1 0.049 1.7E-06 57.1 3.6 31 56-86 28-59 (525)
339 3ld9_A DTMP kinase, thymidylat 93.0 0.063 2.1E-06 49.8 3.8 26 66-91 21-46 (223)
340 1z08_A RAS-related protein RAB 93.0 0.058 2E-06 46.3 3.4 23 67-89 7-29 (170)
341 3def_A T7I23.11 protein; chlor 93.0 0.11 3.7E-06 49.0 5.6 42 47-88 17-58 (262)
342 1ky3_A GTP-binding protein YPT 93.0 0.059 2E-06 46.8 3.4 23 67-89 9-31 (182)
343 1g16_A RAS-related protein SEC 93.0 0.055 1.9E-06 46.4 3.2 22 67-88 4-25 (170)
344 1tf7_A KAIC; homohexamer, hexa 92.9 0.047 1.6E-06 57.2 3.2 32 59-90 274-305 (525)
345 1sgw_A Putative ABC transporte 92.9 0.049 1.7E-06 50.2 2.9 27 65-91 34-60 (214)
346 1mv5_A LMRA, multidrug resista 92.9 0.051 1.8E-06 51.0 3.0 28 64-91 26-53 (243)
347 1r8s_A ADP-ribosylation factor 92.9 0.062 2.1E-06 45.9 3.4 22 68-89 2-23 (164)
348 2erx_A GTP-binding protein DI- 92.9 0.06 2E-06 46.2 3.3 22 67-88 4-25 (172)
349 2d2e_A SUFC protein; ABC-ATPas 92.9 0.06 2.1E-06 50.7 3.5 25 65-89 28-52 (250)
350 1b0u_A Histidine permease; ABC 92.9 0.052 1.8E-06 51.6 3.1 28 64-91 30-57 (262)
351 1r2q_A RAS-related protein RAB 92.9 0.063 2.1E-06 45.9 3.4 22 67-88 7-28 (170)
352 1c1y_A RAS-related protein RAP 92.9 0.063 2.2E-06 45.9 3.4 22 67-88 4-25 (167)
353 3q85_A GTP-binding protein REM 92.8 0.059 2E-06 46.3 3.2 21 68-88 4-24 (169)
354 3cr8_A Sulfate adenylyltranfer 92.8 0.037 1.3E-06 58.4 2.2 27 65-91 368-394 (552)
355 3sop_A Neuronal-specific septi 92.8 0.055 1.9E-06 51.7 3.2 24 68-91 4-27 (270)
356 2zu0_C Probable ATP-dependent 92.8 0.066 2.3E-06 51.0 3.7 26 64-89 44-69 (267)
357 3g5u_A MCG1178, multidrug resi 92.8 0.44 1.5E-05 55.4 11.2 28 64-91 414-441 (1284)
358 2ff7_A Alpha-hemolysin translo 92.8 0.054 1.9E-06 51.0 3.0 28 64-91 33-60 (247)
359 2pze_A Cystic fibrosis transme 92.7 0.056 1.9E-06 50.2 3.1 28 64-91 32-59 (229)
360 3kw6_A 26S protease regulatory 92.7 0.47 1.6E-05 35.9 7.8 75 357-432 1-75 (78)
361 2ghi_A Transport protein; mult 92.7 0.057 1.9E-06 51.3 3.1 27 64-90 44-70 (260)
362 3bc1_A RAS-related protein RAB 92.7 0.066 2.3E-06 47.0 3.4 22 67-88 12-33 (195)
363 2f1r_A Molybdopterin-guanine d 92.7 0.033 1.1E-06 49.5 1.4 25 67-91 3-27 (171)
364 1g6h_A High-affinity branched- 92.7 0.056 1.9E-06 51.2 3.0 27 65-91 32-58 (257)
365 2lkc_A Translation initiation 92.7 0.081 2.8E-06 45.8 3.8 23 66-88 8-30 (178)
366 3v9r_A MHF1, uncharacterized p 92.6 0.29 1E-05 38.4 6.6 57 367-427 21-77 (90)
367 3gfo_A Cobalt import ATP-bindi 92.6 0.058 2E-06 51.7 3.1 28 64-91 32-59 (275)
368 3q72_A GTP-binding protein RAD 92.6 0.058 2E-06 46.2 2.8 21 67-87 3-23 (166)
369 4dsu_A GTPase KRAS, isoform 2B 92.6 0.072 2.4E-06 46.6 3.4 23 67-89 5-27 (189)
370 2gj8_A MNME, tRNA modification 92.6 0.064 2.2E-06 46.9 3.1 24 66-89 4-27 (172)
371 1ji0_A ABC transporter; ATP bi 92.6 0.059 2E-06 50.4 3.0 27 65-91 31-57 (240)
372 3b0b_B CENP-S, centromere prot 92.6 0.41 1.4E-05 38.8 7.6 60 365-428 26-85 (107)
373 1upt_A ARL1, ADP-ribosylation 92.6 0.072 2.5E-06 45.8 3.4 23 66-88 7-29 (171)
374 2olj_A Amino acid ABC transpor 92.6 0.06 2.1E-06 51.2 3.1 28 64-91 48-75 (263)
375 2ixe_A Antigen peptide transpo 92.5 0.062 2.1E-06 51.3 3.1 28 64-91 43-70 (271)
376 1lw7_A Transcriptional regulat 92.5 0.062 2.1E-06 53.5 3.2 26 66-91 170-195 (365)
377 2xzl_A ATP-dependent helicase 92.5 0.09 3.1E-06 58.1 4.8 24 67-90 376-399 (802)
378 2qi9_C Vitamin B12 import ATP- 92.5 0.062 2.1E-06 50.7 3.1 28 64-91 24-51 (249)
379 2p67_A LAO/AO transport system 92.5 0.16 5.5E-06 50.1 6.2 27 64-90 54-80 (341)
380 1z0f_A RAB14, member RAS oncog 92.5 0.074 2.5E-06 46.0 3.4 23 67-89 16-38 (179)
381 3fvq_A Fe(3+) IONS import ATP- 92.5 0.065 2.2E-06 53.4 3.3 27 65-91 29-55 (359)
382 2hxs_A RAB-26, RAS-related pro 92.5 0.072 2.5E-06 46.2 3.3 22 67-88 7-28 (178)
383 2y8e_A RAB-protein 6, GH09086P 92.5 0.07 2.4E-06 46.2 3.2 22 67-88 15-36 (179)
384 2wjg_A FEOB, ferrous iron tran 92.4 0.067 2.3E-06 47.0 3.0 22 67-88 8-29 (188)
385 4dra_A Centromere protein S; D 92.4 0.39 1.3E-05 39.2 7.3 60 365-428 34-93 (113)
386 3tw8_B RAS-related protein RAB 92.4 0.068 2.3E-06 46.3 3.1 22 67-88 10-31 (181)
387 4g1u_C Hemin import ATP-bindin 92.4 0.064 2.2E-06 51.1 3.0 28 64-91 35-62 (266)
388 2fn4_A P23, RAS-related protei 92.4 0.072 2.5E-06 46.1 3.2 23 67-89 10-32 (181)
389 2onk_A Molybdate/tungstate ABC 92.4 0.078 2.7E-06 49.7 3.6 25 67-91 25-49 (240)
390 2j37_W Signal recognition part 92.4 0.17 5.7E-06 52.8 6.4 25 66-90 101-125 (504)
391 1vpl_A ABC transporter, ATP-bi 92.4 0.067 2.3E-06 50.7 3.2 28 64-91 39-66 (256)
392 1vt4_I APAF-1 related killer D 92.4 0.13 4.5E-06 58.0 5.9 43 42-88 130-172 (1221)
393 3con_A GTPase NRAS; structural 92.4 0.077 2.6E-06 46.7 3.4 23 67-89 22-44 (190)
394 2dpy_A FLII, flagellum-specifi 92.4 0.16 5.5E-06 52.0 6.2 36 56-92 148-183 (438)
395 1mh1_A RAC1; GTP-binding, GTPa 92.3 0.07 2.4E-06 46.5 3.1 22 67-88 6-27 (186)
396 1z47_A CYSA, putative ABC-tran 92.3 0.076 2.6E-06 52.8 3.5 28 64-91 39-66 (355)
397 2oil_A CATX-8, RAS-related pro 92.3 0.08 2.7E-06 46.8 3.4 23 67-89 26-48 (193)
398 1m7b_A RND3/RHOE small GTP-bin 92.3 0.075 2.6E-06 46.8 3.2 23 67-89 8-30 (184)
399 2efe_B Small GTP-binding prote 92.3 0.082 2.8E-06 45.9 3.4 23 67-89 13-35 (181)
400 1m8p_A Sulfate adenylyltransfe 92.3 0.073 2.5E-06 56.5 3.6 26 66-91 396-421 (573)
401 2a9k_A RAS-related protein RAL 92.3 0.082 2.8E-06 46.1 3.4 23 67-89 19-41 (187)
402 2ihy_A ABC transporter, ATP-bi 92.2 0.069 2.4E-06 51.3 3.1 28 64-91 45-72 (279)
403 2yz2_A Putative ABC transporte 92.2 0.071 2.4E-06 50.7 3.1 28 64-91 31-58 (266)
404 3cf0_A Transitional endoplasmi 92.2 0.27 9.3E-06 47.3 7.4 64 187-256 152-222 (301)
405 2yyz_A Sugar ABC transporter, 92.2 0.079 2.7E-06 52.8 3.5 27 65-91 28-54 (359)
406 2it1_A 362AA long hypothetical 92.2 0.08 2.8E-06 52.8 3.6 27 65-91 28-54 (362)
407 2bme_A RAB4A, RAS-related prot 92.2 0.078 2.7E-06 46.4 3.2 23 67-89 11-33 (186)
408 3clv_A RAB5 protein, putative; 92.2 0.084 2.9E-06 46.5 3.4 23 67-89 8-30 (208)
409 3kkq_A RAS-related protein M-R 92.2 0.085 2.9E-06 46.1 3.4 24 66-89 18-41 (183)
410 2nq2_C Hypothetical ABC transp 92.2 0.071 2.4E-06 50.4 3.0 27 65-91 30-56 (253)
411 2www_A Methylmalonic aciduria 92.2 0.22 7.5E-06 49.3 6.7 25 66-90 74-98 (349)
412 2g6b_A RAS-related protein RAB 92.1 0.087 3E-06 45.7 3.4 23 67-89 11-33 (180)
413 3rlf_A Maltose/maltodextrin im 92.1 0.083 2.8E-06 53.0 3.6 27 65-91 28-54 (381)
414 1v43_A Sugar-binding transport 92.1 0.086 2.9E-06 52.8 3.6 27 65-91 36-62 (372)
415 1svi_A GTP-binding protein YSX 92.0 0.092 3.2E-06 46.4 3.5 23 66-88 23-45 (195)
416 3ihw_A Centg3; RAS, centaurin, 92.0 0.087 3E-06 46.6 3.2 24 66-89 20-43 (184)
417 1g29_1 MALK, maltose transport 92.0 0.087 3E-06 52.8 3.5 27 65-91 28-54 (372)
418 2cxx_A Probable GTP-binding pr 92.0 0.075 2.6E-06 46.6 2.8 21 68-88 3-23 (190)
419 3hu3_A Transitional endoplasmi 91.9 0.49 1.7E-05 49.0 9.3 62 189-256 340-408 (489)
420 1ls1_A Signal recognition part 91.9 0.096 3.3E-06 50.6 3.7 27 65-91 97-123 (295)
421 2gks_A Bifunctional SAT/APS ki 91.9 0.11 3.9E-06 54.7 4.5 26 66-91 372-397 (546)
422 1m2o_B GTP-binding protein SAR 91.9 0.087 3E-06 46.8 3.2 22 67-88 24-45 (190)
423 3k53_A Ferrous iron transport 91.9 0.087 3E-06 50.0 3.3 22 67-88 4-25 (271)
424 2obl_A ESCN; ATPase, hydrolase 91.8 0.17 6E-06 50.0 5.5 36 56-92 62-97 (347)
425 2gf9_A RAS-related protein RAB 91.8 0.097 3.3E-06 46.2 3.4 23 67-89 23-45 (189)
426 3bwd_D RAC-like GTP-binding pr 91.8 0.098 3.4E-06 45.5 3.4 23 67-89 9-31 (182)
427 3tkl_A RAS-related protein RAB 91.8 0.098 3.3E-06 46.2 3.4 23 67-89 17-39 (196)
428 2bov_A RAla, RAS-related prote 91.8 0.097 3.3E-06 46.6 3.4 24 66-89 14-37 (206)
429 3c5c_A RAS-like protein 12; GD 91.8 0.1 3.5E-06 46.2 3.4 23 67-89 22-44 (187)
430 2atv_A RERG, RAS-like estrogen 91.8 0.1 3.5E-06 46.4 3.4 24 66-89 28-51 (196)
431 3t1o_A Gliding protein MGLA; G 91.8 0.095 3.3E-06 46.1 3.2 24 67-90 15-38 (198)
432 4i1u_A Dephospho-COA kinase; s 91.8 0.12 4.2E-06 47.4 4.0 28 67-97 10-37 (210)
433 1x3s_A RAS-related protein RAB 91.7 0.1 3.5E-06 45.9 3.4 23 67-89 16-38 (195)
434 2iwr_A Centaurin gamma 1; ANK 91.7 0.076 2.6E-06 46.2 2.5 23 67-89 8-30 (178)
435 3t5g_A GTP-binding protein RHE 91.7 0.095 3.3E-06 45.7 3.2 22 67-88 7-28 (181)
436 1fzq_A ADP-ribosylation factor 91.7 0.098 3.4E-06 46.0 3.2 23 66-88 16-38 (181)
437 1vg8_A RAS-related protein RAB 91.7 0.1 3.5E-06 46.5 3.4 23 67-89 9-31 (207)
438 1j8m_F SRP54, signal recogniti 91.7 0.089 3.1E-06 51.0 3.2 26 66-91 98-123 (297)
439 1zd9_A ADP-ribosylation factor 91.7 0.1 3.6E-06 46.0 3.4 23 67-89 23-45 (188)
440 2fg5_A RAB-22B, RAS-related pr 91.6 0.099 3.4E-06 46.4 3.2 23 67-89 24-46 (192)
441 1z06_A RAS-related protein RAB 91.6 0.11 3.7E-06 45.9 3.4 22 67-88 21-42 (189)
442 2a5j_A RAS-related protein RAB 91.6 0.11 3.6E-06 46.0 3.4 23 67-89 22-44 (191)
443 1pui_A ENGB, probable GTP-bind 91.6 0.062 2.1E-06 48.3 1.9 24 65-88 25-48 (210)
444 3reg_A RHO-like small GTPase; 91.6 0.11 3.6E-06 46.1 3.4 23 67-89 24-46 (194)
445 2p5s_A RAS and EF-hand domain 91.6 0.11 3.6E-06 46.4 3.4 23 67-89 29-51 (199)
446 3pqc_A Probable GTP-binding pr 91.6 0.11 3.7E-06 45.6 3.4 23 67-89 24-46 (195)
447 3d31_A Sulfate/molybdate ABC t 91.6 0.07 2.4E-06 53.0 2.3 27 65-91 25-51 (348)
448 3dz8_A RAS-related protein RAB 91.6 0.1 3.4E-06 46.2 3.2 24 67-90 24-47 (191)
449 2ffh_A Protein (FFH); SRP54, s 91.5 0.25 8.6E-06 50.3 6.4 28 65-92 97-124 (425)
450 1zbd_A Rabphilin-3A; G protein 91.5 0.1 3.6E-06 46.5 3.2 22 67-88 9-30 (203)
451 2pjz_A Hypothetical protein ST 91.5 0.092 3.1E-06 50.0 2.9 37 290-327 147-184 (263)
452 2bcg_Y Protein YP2, GTP-bindin 91.4 0.1 3.6E-06 46.7 3.2 23 67-89 9-31 (206)
453 3gd7_A Fusion complex of cysti 91.4 0.1 3.4E-06 52.6 3.3 27 64-90 45-71 (390)
454 3oes_A GTPase rhebl1; small GT 91.4 0.11 3.6E-06 46.5 3.2 23 67-89 25-47 (201)
455 2cjw_A GTP-binding protein GEM 91.3 0.11 3.8E-06 46.3 3.2 23 67-89 7-29 (192)
456 1knx_A Probable HPR(Ser) kinas 91.3 0.088 3E-06 51.3 2.6 23 66-88 147-169 (312)
457 1ksh_A ARF-like protein 2; sma 91.3 0.11 3.7E-06 45.6 3.0 23 66-88 18-40 (186)
458 2krk_A 26S protease regulatory 91.3 0.44 1.5E-05 37.0 6.2 74 356-430 8-81 (86)
459 2gf0_A GTP-binding protein DI- 91.3 0.11 3.9E-06 45.9 3.2 23 66-88 8-30 (199)
460 4ag6_A VIRB4 ATPase, type IV s 91.3 0.13 4.5E-06 51.5 4.0 84 290-391 263-360 (392)
461 4hlc_A DTMP kinase, thymidylat 91.3 0.19 6.5E-06 45.8 4.7 29 67-95 3-31 (205)
462 1yrb_A ATP(GTP)binding protein 91.2 0.14 4.7E-06 47.9 3.9 25 67-91 15-39 (262)
463 3cph_A RAS-related protein SEC 91.2 0.12 4.2E-06 46.2 3.4 23 66-88 20-42 (213)
464 3eie_A Vacuolar protein sortin 91.2 0.44 1.5E-05 46.3 7.6 61 188-256 153-221 (322)
465 1gwn_A RHO-related GTP-binding 91.2 0.11 3.9E-06 46.8 3.2 23 67-89 29-51 (205)
466 2rcn_A Probable GTPase ENGC; Y 91.2 0.12 4.2E-06 51.4 3.6 25 66-90 215-239 (358)
467 1xx6_A Thymidine kinase; NESG, 91.1 0.15 5.2E-06 46.0 3.9 26 65-90 7-32 (191)
468 2fh5_B SR-beta, signal recogni 91.1 0.13 4.3E-06 46.4 3.4 23 67-89 8-30 (214)
469 2xxa_A Signal recognition part 91.1 0.12 4.2E-06 52.7 3.6 26 66-91 100-125 (433)
470 2bbs_A Cystic fibrosis transme 91.1 0.1 3.5E-06 50.4 2.9 26 65-90 63-88 (290)
471 1f2t_A RAD50 ABC-ATPase; DNA d 91.1 0.14 4.9E-06 44.0 3.5 24 67-90 24-47 (149)
472 2ew1_A RAS-related protein RAB 91.1 0.12 4.1E-06 46.6 3.2 23 67-89 27-49 (201)
473 3lxx_A GTPase IMAP family memb 91.0 0.12 4.1E-06 47.8 3.3 22 67-88 30-51 (239)
474 1moz_A ARL1, ADP-ribosylation 91.0 0.089 3E-06 45.9 2.2 22 66-87 18-39 (183)
475 3ice_A Transcription terminati 91.0 0.14 4.8E-06 51.4 3.8 30 62-91 170-199 (422)
476 2qag_B Septin-6, protein NEDD5 90.9 0.16 5.5E-06 51.7 4.3 26 64-89 38-65 (427)
477 2fu5_C RAS-related protein RAB 90.9 0.08 2.7E-06 46.2 1.8 22 67-88 9-30 (183)
478 2vp4_A Deoxynucleoside kinase; 90.8 0.087 3E-06 48.7 2.0 25 65-89 19-43 (230)
479 1ko7_A HPR kinase/phosphatase; 90.8 0.13 4.3E-06 50.3 3.2 24 66-89 144-167 (314)
480 3cbq_A GTP-binding protein REM 90.8 0.099 3.4E-06 46.7 2.4 21 67-87 24-44 (195)
481 1tq4_A IIGP1, interferon-induc 90.8 0.16 5.4E-06 51.6 4.0 24 67-90 70-93 (413)
482 3vh5_A CENP-S; histone fold, c 90.8 0.64 2.2E-05 39.3 7.0 60 365-428 26-85 (140)
483 1zj6_A ADP-ribosylation factor 90.8 0.13 4.3E-06 45.3 3.0 23 66-88 16-38 (187)
484 4bas_A ADP-ribosylation factor 90.8 0.12 4E-06 45.8 2.8 23 66-88 17-39 (199)
485 2atx_A Small GTP binding prote 90.8 0.14 4.7E-06 45.3 3.2 23 67-89 19-41 (194)
486 2npi_A Protein CLP1; CLP1-PCF1 90.7 0.12 4.2E-06 53.2 3.2 28 63-90 135-162 (460)
487 1oxx_K GLCV, glucose, ABC tran 90.7 0.075 2.6E-06 52.9 1.6 27 65-91 30-56 (353)
488 2qp9_X Vacuolar protein sortin 90.7 0.61 2.1E-05 46.1 8.3 61 188-256 186-254 (355)
489 2zan_A Vacuolar protein sortin 90.7 0.56 1.9E-05 47.9 8.2 78 188-279 270-355 (444)
490 2fv8_A H6, RHO-related GTP-bin 90.7 0.14 4.7E-06 46.0 3.2 23 67-89 26-48 (207)
491 2o52_A RAS-related protein RAB 90.7 0.13 4.4E-06 46.0 3.0 22 67-88 26-47 (200)
492 1f6b_A SAR1; gtpases, N-termin 90.7 0.098 3.4E-06 46.8 2.2 21 67-87 26-46 (198)
493 2q3h_A RAS homolog gene family 90.6 0.14 4.8E-06 45.5 3.2 23 66-88 20-42 (201)
494 2b6h_A ADP-ribosylation factor 90.6 0.12 4.2E-06 45.9 2.8 21 67-87 30-50 (192)
495 1taf_B TFIID TBP associated fa 90.5 0.96 3.3E-05 33.7 7.1 62 359-428 7-69 (70)
496 2il1_A RAB12; G-protein, GDP, 90.5 0.14 4.7E-06 45.4 3.0 22 67-88 27-48 (192)
497 2hup_A RAS-related protein RAB 90.5 0.15 5E-06 45.7 3.2 22 67-88 30-51 (201)
498 2f7s_A C25KG, RAS-related prot 90.5 0.15 5.1E-06 46.0 3.3 22 67-88 26-47 (217)
499 2h17_A ADP-ribosylation factor 90.5 0.12 4.1E-06 45.3 2.5 22 67-88 22-43 (181)
500 2gco_A H9, RHO-related GTP-bin 90.5 0.15 5E-06 45.6 3.2 23 67-89 26-48 (201)
No 1
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=100.00 E-value=4.7e-59 Score=488.37 Aligned_cols=443 Identities=43% Similarity=0.739 Sum_probs=373.3
Q ss_pred ccccccchhhHhhHhhhcccccCCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHH
Q 012326 4 LKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIA 83 (466)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA 83 (466)
|.++++++.+|..|+++|||++|+++.+..+|.+.|++++|++++++.+..+++.+..+..+++++||+||||||||++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~s~i~~~~l~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp --------CHHHHHHHTTTTCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred CCcccccccccccchhhhhcccCCCCCcccChhhchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCC---CC-CceeeEEE
Q 012326 84 MGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATS---GA-AAKTGKLT 159 (466)
Q Consensus 84 ~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~---~g-~~~~~~~~ 159 (466)
+++|++++...||+.++++.+.+.+.++.+.+.++|..+.+.+..+|++||+||+|++++.+.... .+ ......+.
T Consensus 81 ~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~ 160 (456)
T 2c9o_A 81 LAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIG 160 (456)
T ss_dssp HHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEE
T ss_pred HHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHH
Confidence 999999998889999999999999999999999999999887778899999999999999886542 22 45566778
Q ss_pred eeeccchhHhhhhhHHHHHhhhcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhc
Q 012326 160 LKTTEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCV 239 (466)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~ 239 (466)
|.+.++...+.+...+++.+...++..+++++|.++||+++.+++++.|++|||. ....++|+|++++..|++++..+
T Consensus 161 l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~--~~~~~v~~p~~~~~~R~~il~~~ 238 (456)
T 2c9o_A 161 LKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDL--EAEEYVPLPKGDVHKKKEIIQDV 238 (456)
T ss_dssp EEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSC--SSSSEECCCCSCSEEEEEEEEEE
T ss_pred HhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCc--ceeEecCCCchhHHHHHHHHHHH
Confidence 8888888889999999999999999999999999999999999999999999999 77889999999999999999999
Q ss_pred chhhHHHHhhhccc---ccccccC----CccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHH
Q 012326 240 TLHEIDVINSRTQG---FLALFTG----DTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRA 312 (466)
Q Consensus 240 ~l~~ld~~~~~~~~---~~~l~~~----~~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~ 312 (466)
++++++.++.++.| +..++.+ ...++...+++.++..+..|.+.+...+.++|+||||+|+|+.+++++|+++
T Consensus 239 ~~~dl~~~a~~t~ggadl~~l~~~i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~ 318 (456)
T 2c9o_A 239 TLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRA 318 (456)
T ss_dssp EHHHHHHTC-----------------------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHH
Confidence 99999999999885 3334433 4567788888899999999999999888889999999999999999999999
Q ss_pred hhhcCCCeEEEEeccceeEeeccc-ccCCCCCChhHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhc
Q 012326 313 LENEMAPILVVATNRGITRIRGTN-YKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVG 391 (466)
Q Consensus 313 le~~~~~iiil~tn~~~~~~~~~~-~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a 391 (466)
+|++..++||++||.+...+++.+ ...|..+|++++|||..++|.||+.+++.++|+.+++.+++.++++++.+++..+
T Consensus 319 lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a 398 (456)
T 2c9o_A 319 LESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIG 398 (456)
T ss_dssp TTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred hhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 999999988889988765555554 4557899999999998899999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012326 392 EGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 448 (466)
Q Consensus 392 ~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (466)
.+|++|.|+++++.|..+|...+...||.++|++++.+|+|.+++++++.+|+.+|+
T Consensus 399 ~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~ 455 (456)
T 2c9o_A 399 TKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYM 455 (456)
T ss_dssp HHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHHHHHHHHHC------
T ss_pred cCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcChHHHHHHHHHHHHhcc
Confidence 449999999999999999988899999999999999999999999999999999886
No 2
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=100.00 E-value=7.8e-42 Score=346.93 Aligned_cols=350 Identities=74% Similarity=1.137 Sum_probs=270.4
Q ss_pred CCcccccccchhhHhhHhhhcccccCCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChH
Q 012326 1 MAELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKT 80 (466)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT 80 (466)
+|.|.+++.++.++..|++.|||++|+++.+.++|...|++++|++.+++++..+...+..+..+++++||+||||||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT 84 (368)
T 3uk6_A 5 TATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKT 84 (368)
T ss_dssp -------------------CCTTCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHH
T ss_pred eeeeeehhccccchhhccchhhhhhccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHH
Confidence 46789999999999999999999999999999999996799999999999999999999999888899999999999999
Q ss_pred HHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEe
Q 012326 81 AIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTL 160 (466)
Q Consensus 81 ~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l 160 (466)
++|+++++.+++..||+.+++..+++.+++..+.+.+.++.+.+.++++
T Consensus 85 ~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 133 (368)
T 3uk6_A 85 AIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKA------------------------------- 133 (368)
T ss_dssp HHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC---------------------------------
T ss_pred HHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhh-------------------------------
Confidence 9999999999988899999999999999999998888888766644220
Q ss_pred eeccchhHhhhhhHHHHHhhhcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcc
Q 012326 161 KTTEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVT 240 (466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~ 240 (466)
...+.++
T Consensus 134 -------------------------------------------------------------------------~~~~~~~ 140 (368)
T 3uk6_A 134 -------------------------------------------------------------------------GAVHTVS 140 (368)
T ss_dssp -----------------------------------------------------------------------------CEE
T ss_pred -------------------------------------------------------------------------hcccccc
Confidence 1123446
Q ss_pred hhhHHHHhhhcccccccccCCccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCe
Q 012326 241 LHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPI 320 (466)
Q Consensus 241 l~~ld~~~~~~~~~~~l~~~~~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i 320 (466)
++++|..+..+.++.+++.+..+++...+++.+......+...++....++|+||||+|.++.+.++.|++.++++..++
T Consensus 141 ~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~ 220 (368)
T 3uk6_A 141 LHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV 220 (368)
T ss_dssp HHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE
T ss_pred HhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhhCcCCCe
Confidence 77888888888888888888888888999999988888887777655556899999999999999999999999999999
Q ss_pred EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHH
Q 012326 321 LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAI 400 (466)
Q Consensus 321 iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai 400 (466)
++++++++...+.+++...+..++++|++||..+.|.||+.+++.++|..++...++.++++++++|++.+..|++|.++
T Consensus 221 ~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 221 LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHH
T ss_pred eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHH
Confidence 98999887555555555556889999999998899999999999999999999999999999999999998339999999
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hhhhhc
Q 012326 401 HLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI-NEVTIE 454 (466)
Q Consensus 401 ~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 454 (466)
++++.+...|...+...||.++|++++..|.+...+.+++.+++++|+ ++...+
T Consensus 301 ~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (368)
T 3uk6_A 301 QLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGE 355 (368)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHHHHHHHHHhhhhhhhhcCCcc
Confidence 999999989888889999999999999999999999999999999998 443333
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.9e-25 Score=221.94 Aligned_cols=235 Identities=20% Similarity=0.231 Sum_probs=182.7
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHH-HH-------cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQM-IK-------EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~-l~-------~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
-.|...|+||.|.+++|+.+.+++.. ++ .|..+++++|||||||||||++|+++|.+++ .||+.++++++
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--~~f~~v~~s~l 218 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--CKFIRVSGAEL 218 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--CEEEEEEGGGG
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--CCceEEEhHHh
Confidence 34777789999999999999988865 32 3778889999999999999999999999999 89999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcc
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEK 183 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
.+.++++++ .++++|..|... +||+||+||+|++++.+..+.++.
T Consensus 219 ~sk~vGese~~vr~lF~~Ar~~---aP~IIFiDEiDai~~~R~~~~~~~------------------------------- 264 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFVMAREH---APSIIFMDEIDSIGSTRVEGSGGG------------------------------- 264 (405)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHT---CSEEEEEESSSCCTTSCSCSSSGG-------------------------------
T ss_pred hccccchHHHHHHHHHHHHHHh---CCceEeeecchhhccCCCCCCCCC-------------------------------
Confidence 999999999 899999888764 499999999999987774433210
Q ss_pred cCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCcc
Q 012326 184 VQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTG 263 (466)
Q Consensus 184 ~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ 263 (466)
T Consensus 265 -------------------------------------------------------------------------------- 264 (405)
T 4b4t_J 265 -------------------------------------------------------------------------------- 264 (405)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhh--hcCCCe-EEEEeccceeEeecccccCC
Q 012326 264 EIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALE--NEMAPI-LVVATNRGITRIRGTNYKSA 340 (466)
Q Consensus 264 ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le--~~~~~i-iil~tn~~~~~~~~~~~~~~ 340 (466)
....+..+. .|+..++ .....+ +|.+||+ |
T Consensus 265 --~~~~~~~l~---------------------------------~lL~~lDg~~~~~~V~vIaATNr------------p 297 (405)
T 4b4t_J 265 --DSEVQRTML---------------------------------ELLNQLDGFETSKNIKIIMATNR------------L 297 (405)
T ss_dssp --GGHHHHHHH---------------------------------HHHHHHHTTTCCCCEEEEEEESC------------S
T ss_pred --cHHHHHHHH---------------------------------HHHHhhhccCCCCCeEEEeccCC------------h
Confidence 000000111 1111111 112233 7888888 9
Q ss_pred CCCChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCc
Q 012326 341 HGIPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKV 417 (466)
Q Consensus 341 ~~l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~ 417 (466)
..|+++|++ |+ ..|.|.+|+.++..+||+..++..++.-+- -++.+++.+.+-+...+-+++..|+..|..+++..
T Consensus 298 d~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv-dl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~ 376 (405)
T 4b4t_J 298 DILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI-NLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIH 376 (405)
T ss_dssp SSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC-CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSB
T ss_pred hhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC-CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999998 88 788999999999999999888765543111 27888888855677888889999988887788899
Q ss_pred cCHHHHHHHHHHHH
Q 012326 418 VEVQDIDRVYRLFL 431 (466)
Q Consensus 418 It~~~v~~~~~~~~ 431 (466)
||.+|+..|+.-..
T Consensus 377 vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 377 VTQEDFELAVGKVM 390 (405)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999886543
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.7e-24 Score=220.49 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=99.5
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHH-HH-------cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQM-IK-------EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~-l~-------~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
..|...|+||.|.+++|+.+.+.+.. +. .|..+++++|||||||||||++|+++|.+++ .||+.++++++
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--~~fi~v~~s~l 252 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--ATFLRIVGSEL 252 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--CEEEEEESGGG
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--CCEEEEEHHHh
Confidence 46777889999999999999988875 22 3777789999999999999999999999999 89999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCC
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATS 149 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~ 149 (466)
.+.++++++ .++.+|..|... +||+||+||+|+++..|...+
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~---aP~IIfiDEiDai~~~R~~~~ 295 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGEN---APSIVFIDEIDAIGTKRYDSN 295 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHT---CSEEEEEEEESSSSCCCSCSS
T ss_pred hhccCchHHHHHHHHHHHHHhc---CCcEEEEehhhhhcccCCCCC
Confidence 999999999 799999888764 499999999999998886544
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.6e-24 Score=220.17 Aligned_cols=237 Identities=18% Similarity=0.185 Sum_probs=175.9
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHH-H-------HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQM-I-------KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~-l-------~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
-+|...|+||.|.+++|+.+.+.+.. + ..|..+++++|||||||||||++|+++|.+++ .||+.++++++
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--~~fi~vs~s~L 279 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--ATFIRVIGSEL 279 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--CEEEEEEGGGG
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--CCeEEEEhHHh
Confidence 46777889999999999999988765 2 23777889999999999999999999999999 89999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcc
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEK 183 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
.+.++++++ .++.+|..|... +||+||+||+|+++..|...+.|.. .........+++.+ ++
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~---aP~IIfiDEiDai~~~R~~~~~~~~------------~~~~~~l~~lL~~l--Dg 342 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTK---KACIIFFDEIDAVGGARFDDGAGGD------------NEVQRTMLELITQL--DG 342 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHT---CSEEEEEECCTTTSBCCSSSSCGGG------------GHHHHHHHHHHHHH--HS
T ss_pred hcccCCHHHHHHHHHHHHHHhc---CCceEeecccccccccccCcCCCcc------------HHHHHHHHHHHHHh--hc
Confidence 999999999 899999888764 4999999999999988865443200 00011111112222 00
Q ss_pred cCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCcc
Q 012326 184 VQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTG 263 (466)
Q Consensus 184 ~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ 263 (466)
......|
T Consensus 343 ~~~~~~V------------------------------------------------------------------------- 349 (467)
T 4b4t_H 343 FDPRGNI------------------------------------------------------------------------- 349 (467)
T ss_dssp SCCTTTE-------------------------------------------------------------------------
T ss_pred cCCCCcE-------------------------------------------------------------------------
Confidence 1111111
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCC
Q 012326 264 EIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGI 343 (466)
Q Consensus 264 ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l 343 (466)
++|.+||+ |..|
T Consensus 350 --------------------------------------------------------iVIaATNr------------pd~L 361 (467)
T 4b4t_H 350 --------------------------------------------------------KVMFATNR------------PNTL 361 (467)
T ss_dssp --------------------------------------------------------EEEEECSC------------TTSB
T ss_pred --------------------------------------------------------EEEeCCCC------------cccC
Confidence 35667776 7777
Q ss_pred ChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCH
Q 012326 344 PMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEV 420 (466)
Q Consensus 344 ~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~ 420 (466)
+++|++ || ..|+|..|+.++..+||+..++...+.-+- -++.|++.+.+-+.+.+-+++..|+..|..+++..|+.
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv-dl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~ 440 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI-RWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATE 440 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC-CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 777776 77 667788888888888888877655432111 26778888754577788888888888887788899999
Q ss_pred HHHHHHHHHH
Q 012326 421 QDIDRVYRLF 430 (466)
Q Consensus 421 ~~v~~~~~~~ 430 (466)
+|+..|+.-.
T Consensus 441 ~Df~~Al~kV 450 (467)
T 4b4t_H 441 KDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.7e-24 Score=220.53 Aligned_cols=237 Identities=17% Similarity=0.195 Sum_probs=173.1
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHH-HH-------cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQM-IK-------EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~-l~-------~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
-.|...|+||.|.+++++.+..++.. +. .|..+++++|||||||||||++|+++|.+++ .||+.++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~--~~~~~v~~s~l 251 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG--ANFIFSPASGI 251 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEEEEEEGGGT
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehhhh
Confidence 36777789999999999999988875 32 3777889999999999999999999999999 89999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcc
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEK 183 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
.+.++++++ .++.+|..|... +||+||+||+|+++..|...+.+.. .........++..+ ++
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~---~P~IifiDEiDai~~~R~~~~~~~~------------~~~~~~l~~lL~~l--Dg 314 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEH---EPCIIFMDEVDAIGGRRFSEGTSAD------------REIQRTLMELLTQM--DG 314 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHS---CSEEEEEECCCSSSCCCSSSCCSST------------THHHHHHHHHHHHH--HS
T ss_pred ccccchHHHHHHHHHHHHHHhc---CCceeeeecccccccccccCCCCcc------------hHHHHHHHHHHHHh--hc
Confidence 999999999 799999888764 5999999999999988755432200 00011111222222 01
Q ss_pred cCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCcc
Q 012326 184 VQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTG 263 (466)
Q Consensus 184 ~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ 263 (466)
+...+
T Consensus 315 ~~~~~--------------------------------------------------------------------------- 319 (437)
T 4b4t_L 315 FDNLG--------------------------------------------------------------------------- 319 (437)
T ss_dssp SSCTT---------------------------------------------------------------------------
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 11111
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCC
Q 012326 264 EIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGI 343 (466)
Q Consensus 264 ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l 343 (466)
..++|.+||+ |..|
T Consensus 320 ------------------------------------------------------~vivI~ATNr------------p~~L 333 (437)
T 4b4t_L 320 ------------------------------------------------------QTKIIMATNR------------PDTL 333 (437)
T ss_dssp ------------------------------------------------------SSEEEEEESS------------TTSS
T ss_pred ------------------------------------------------------CeEEEEecCC------------chhh
Confidence 1235666666 6677
Q ss_pred ChhHHhh--h-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCH
Q 012326 344 PMDLLDR--L-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEV 420 (466)
Q Consensus 344 ~~~llsR--~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~ 420 (466)
+++|++| + ..|+|+.|+.++..+||+..+......-+ --++.++..+.+-+.+.+-+++..|+..|..++...|+.
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d-~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~ 412 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGE-FDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINP 412 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSC-CCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcc-cCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 7777654 4 45677778888888888777765443211 126777887754577788888888888887788889999
Q ss_pred HHHHHHHHHH
Q 012326 421 QDIDRVYRLF 430 (466)
Q Consensus 421 ~~v~~~~~~~ 430 (466)
+|+..|+.-.
T Consensus 413 ~d~~~Al~~v 422 (437)
T 4b4t_L 413 DDLMKAVRKV 422 (437)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988644
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.93 E-value=7.9e-25 Score=240.22 Aligned_cols=195 Identities=20% Similarity=0.311 Sum_probs=147.3
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHH-HHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQM-IKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~-l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
..|...|+||.|.+++++.+++++.. ++. |..+++++|||||||||||++|+++|.+++ .+|+.++++++
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg--~~~~~v~~~~l 274 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEI 274 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT--CEEEEEEHHHH
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CeEEEEEhHHh
Confidence 34556679999999999999998876 432 556789999999999999999999999998 78999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcc
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEK 183 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
.+.+.++++ .++.+|..|... +||+||+||+|++++.+..+.++ . ...+...++..+ .+
T Consensus 275 ~sk~~gese~~lr~lF~~A~~~---~PsIIfIDEiDal~~~r~~~~~~-~--------------~~riv~~LL~~m--dg 334 (806)
T 3cf2_A 275 MSKLAGESESNLRKAFEEAEKN---APAIIFIDELDAIAPKREKTHGE-V--------------ERRIVSQLLTLM--DG 334 (806)
T ss_dssp HSSCTTHHHHHHHHHHHHHTTS---CSEEEEEESGGGTCCTTTTCCCT-T--------------HHHHHHHHHTHH--HH
T ss_pred hcccchHHHHHHHHHHHHHHHc---CCeEEEEehhcccccccCCCCCh-H--------------HHHHHHHHHHHH--hc
Confidence 999999998 899999988653 59999999999999887544332 0 011112222222 12
Q ss_pred cCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchh-------hHHHHhhhccccc
Q 012326 184 VQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLH-------EIDVINSRTQGFL 255 (466)
Q Consensus 184 ~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~-------~ld~~~~~~~~~~ 255 (466)
+.....|.|..+||+++.+++++.|++|||. ...++.| +...|.+++..+.-. +++.+..++.||.
T Consensus 335 ~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~----~I~i~~P--d~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 335 LKQRAHVIVMAATNRPNSIDPALRRFGRFDR----EVDIGIP--DATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp CCGGGCEEEEEECSSTTTSCTTTTSTTSSCE----EEECCCC--CHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCC
T ss_pred ccccCCEEEEEecCChhhcCHHHhCCcccce----EEecCCC--CHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCC
Confidence 2223347888999999999999999999998 5667777 556787777543211 4555556666543
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.9e-24 Score=221.10 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=97.9
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHH-H-------HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQM-I-------KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~-l-------~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
-.|...|+||.|.+++|+.+...+.. + ..|..+++++|||||||||||++|+++|.+++ .||+.++++.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~--~~f~~v~~s~l 251 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN--ATFLKLAAPQL 251 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEEEEEEGGGG
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--CCEEEEehhhh
Confidence 46777789999999999999877654 2 23777889999999999999999999999999 89999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCC
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATS 149 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~ 149 (466)
.+.++++++ .++.+|..|... .||+||+||+|+++..|....
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~---aP~IifiDEiDal~~~R~~~~ 294 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEK---APTIIFIDELDAIGTKRFDSE 294 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHH---CSEEEEEECTHHHHCCCSSGG
T ss_pred hhcccchHHHHHHHHHHHHHhc---CCeEEeecchhhhhhccCCCC
Confidence 999999999 899999887764 499999999999988875433
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.7e-23 Score=210.78 Aligned_cols=231 Identities=21% Similarity=0.241 Sum_probs=177.7
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHH-HH-------cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQM-IK-------EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~-l~-------~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
-.|...|+||.|.+++|+.+...+.. +. .|..+++++|||||||||||++|+++|.+++ .||+.++++++
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~--~~~~~v~~~~l 242 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK--AAFIRVNGSEF 242 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT--CEEEEEEGGGT
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEecchh
Confidence 46777889999999999999988765 22 2778889999999999999999999999999 89999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcc
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEK 183 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
.+.++++++ .++++|..|... .||++|+||+|+++..|.....+..
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~---aP~IifiDEiD~i~~~R~~~~~~~~------------------------------ 289 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLAREN---APSIIFIDEVDSIATKRFDAQTGSD------------------------------ 289 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHT---CSEEEEEECTHHHHCSCSSSCSCCC------------------------------
T ss_pred hccccchhHHHHHHHHHHHHHc---CCCeeechhhhhhhccccCCCCCCC------------------------------
Confidence 999999998 899999888754 4999999999999877743322100
Q ss_pred cCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCcc
Q 012326 184 VQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTG 263 (466)
Q Consensus 184 ~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ 263 (466)
.
T Consensus 290 -------------------------------------------------------------------------------~ 290 (428)
T 4b4t_K 290 -------------------------------------------------------------------------------R 290 (428)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------h
Confidence 0
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhh--cCCC-eEEEEeccceeEeecccccCC
Q 012326 264 EIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALEN--EMAP-ILVVATNRGITRIRGTNYKSA 340 (466)
Q Consensus 264 ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~--~~~~-iiil~tn~~~~~~~~~~~~~~ 340 (466)
..+.. ++.|+..++. .... ++|.+||+ |
T Consensus 291 ----~~~r~---------------------------------l~~lL~~ldg~~~~~~v~vI~aTN~------------~ 321 (428)
T 4b4t_K 291 ----EVQRI---------------------------------LIELLTQMDGFDQSTNVKVIMATNR------------A 321 (428)
T ss_dssp ----HHHHH---------------------------------HHHHHHHHHHSCSSCSEEEEEEESC------------S
T ss_pred ----HHHHH---------------------------------HHHHHHHhhCCCCCCCEEEEEecCC------------h
Confidence 00000 1111111111 1123 47888888 8
Q ss_pred CCCChhHHh--hh-hhhccC-CCCHHHHHHHHHHHHhhcCCccCHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcC
Q 012326 341 HGIPMDLLD--RL-LIISTK-PYTRDEIRKILDIRCQEEDVEMAED-AKQLLTRVGEGTSLRYAIHLITAAALASQKRKG 415 (466)
Q Consensus 341 ~~l~~~lls--R~-~~i~~~-pl~~~el~~iL~~~~~~~~~~i~~~-~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~ 415 (466)
..++++|++ |+ ..|.|+ +++.++...|++..+....+ +++ -++.++..+.+-+.+.+-++++.|+..|..+++
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l--~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL--APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB--CTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC--CcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 999999998 77 568885 68999999999988875543 222 277888887555778888889999888878888
Q ss_pred CccCHHHHHHHHH
Q 012326 416 KVVEVQDIDRVYR 428 (466)
Q Consensus 416 ~~It~~~v~~~~~ 428 (466)
..|+.+|+..|+.
T Consensus 400 ~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 400 YVILQSDLEEAYA 412 (428)
T ss_dssp SSBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9999999998864
No 10
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.90 E-value=9.9e-24 Score=210.26 Aligned_cols=120 Identities=19% Similarity=0.235 Sum_probs=95.3
Q ss_pred cceeeeecccccc-HHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHH---
Q 012326 290 PGVLFIDEVHMLD-VECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEI--- 364 (466)
Q Consensus 290 ~~vl~iDEi~~l~-~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el--- 364 (466)
++|++|||+|.++ .+.++.|++.++++...+ +|++||. +..+++++++||.++.|.+|+.++.
T Consensus 106 ~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~------------~~~l~~~l~sR~~~i~~~~~~~~e~~~i 173 (324)
T 3u61_B 106 QKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN------------IDGIIKPLQSRCRVITFGQPTDEDKIEM 173 (324)
T ss_dssp EEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS------------GGGSCTTHHHHSEEEECCCCCHHHHHHH
T ss_pred CeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC------------ccccCHHHHhhCcEEEeCCCCHHHHHHH
Confidence 5799999999999 999999999999876554 8888886 6688999999999999999998874
Q ss_pred ----HHHHHHHHhhcCCccCH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 365 ----RKILDIRCQEEDVEMAE-DAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 365 ----~~iL~~~~~~~~~~i~~-~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
...+...+..+++.+++ +++++++..+ .||+|.+++.|+.++ ....||.++++.+..
T Consensus 174 l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~gd~R~a~~~L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 174 MKQMIRRLTEICKHEGIAIADMKVVAALVKKN-FPDFRKTIGELDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHT-CSCTTHHHHHHHHHG------GGTCBCC--------
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhC-CCCHHHHHHHHHHHh------ccCCCCHHHHHHHhC
Confidence 44556667778999998 9999999998 599999999999875 234588887776543
No 11
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.90 E-value=3.4e-22 Score=200.19 Aligned_cols=219 Identities=20% Similarity=0.261 Sum_probs=170.6
Q ss_pred CCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecccee
Q 012326 26 GLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIF 105 (466)
Q Consensus 26 ~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~ 105 (466)
.-.|.++++|..+ ++++|++.+++.+..++.....+..+..++||+||||||||++|+++++.++ .||+.+++..+.
T Consensus 16 ~~~~~~~~~p~~~-~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~--~~~~~~~~~~~~ 92 (338)
T 3pfi_A 16 DETYETSLRPSNF-DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS--ANIKTTAAPMIE 92 (338)
T ss_dssp -------CCCCSG-GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT--CCEEEEEGGGCC
T ss_pred hhhhhhccCCCCH-HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CCeEEecchhcc
Confidence 3478999999987 9999999999999888887765444558999999999999999999999987 567666653210
Q ss_pred cccCCHHHHHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccC
Q 012326 106 SLEMSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQ 185 (466)
Q Consensus 106 ~~e~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
.
T Consensus 93 ~------------------------------------------------------------------------------- 93 (338)
T 3pfi_A 93 K------------------------------------------------------------------------------- 93 (338)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccch
Q 012326 186 SGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEI 265 (466)
Q Consensus 186 ~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei 265 (466)
T Consensus 94 -------------------------------------------------------------------------------- 93 (338)
T 3pfi_A 94 -------------------------------------------------------------------------------- 93 (338)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcCC-------------------CeEEEEec
Q 012326 266 RAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMA-------------------PILVVATN 326 (466)
Q Consensus 266 ~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~~-------------------~iiil~tn 326 (466)
...+...+ ..... ++++||||+|.++.+.+..|++.+++... ..+|.+||
T Consensus 94 ~~~~~~~~-------~~~~~----~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn 162 (338)
T 3pfi_A 94 SGDLAAIL-------TNLSE----GDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT 162 (338)
T ss_dssp HHHHHHHH-------HTCCT----TCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES
T ss_pred hhHHHHHH-------HhccC----CCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC
Confidence 00000000 01111 67999999999999999999999987531 13666666
Q ss_pred cceeEeecccccCCCCCChhHHhhh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012326 327 RGITRIRGTNYKSAHGIPMDLLDRL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITA 405 (466)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~ 405 (466)
+ +..++++|++|| ..+.|.+|+.+++..++...+...++.+++++++.++..+ .|++|.+.++++.
T Consensus 163 ~------------~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 163 R------------AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRS-RSTPRIALRLLKR 229 (338)
T ss_dssp C------------GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTT-TTCHHHHHHHHHH
T ss_pred C------------ccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 5 456889999999 8899999999999999999999999999999999999976 6999999999999
Q ss_pred HHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 406 AALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 406 a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
+...+...+...|+.+++..+...+
T Consensus 230 ~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 230 VRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHhhcCCccCHHHHHHHHHHh
Confidence 9888877778899999999887653
No 12
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.90 E-value=4.9e-23 Score=206.82 Aligned_cols=126 Identities=15% Similarity=0.183 Sum_probs=110.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.++...++.|++.++++.... +|+++|. +..+++++++||..+.|.|++.+++..++
T Consensus 134 ~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~l 201 (353)
T 1sxj_D 134 YKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY------------VTRIIDPLASQCSKFRFKALDASNAIDRL 201 (353)
T ss_dssp CEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHHHSEEEECCCCCHHHHHHHH
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc------------hhhCcchhhccCceEEeCCCCHHHHHHHH
Confidence 5699999999999999999999999876554 7778875 66789999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCC-ccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGK-VVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~-~It~~~v~~~~~ 428 (466)
..++..+++.+++++++++++.+ .||+|.++++++.++..+...+.. .||.++|+.+..
T Consensus 202 ~~~~~~~~~~i~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 202 RFISEQENVKCDDGVLERILDIS-AGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHHT-SSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 99999999999999999999999 599999999999987766433333 799999998764
No 13
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.90 E-value=4.8e-23 Score=214.37 Aligned_cols=127 Identities=16% Similarity=0.277 Sum_probs=101.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILD 369 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL~ 369 (466)
++++||||+|.++...++.|++.+++.. .++|.+|+. .....++++|++||.++.|.|++.+++..++.
T Consensus 107 ~~iLfIDEI~~l~~~~q~~LL~~le~~~-v~lI~att~----------n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~ 175 (447)
T 3pvs_A 107 RTILFVDEVHRFNKSQQDAFLPHIEDGT-ITFIGATTE----------NPSFELNSALLSRARVYLLKSLSTEDIEQVLT 175 (447)
T ss_dssp CEEEEEETTTCC------CCHHHHHTTS-CEEEEEESS----------CGGGSSCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred CcEEEEeChhhhCHHHHHHHHHHHhcCc-eEEEecCCC----------CcccccCHHHhCceeEEeeCCcCHHHHHHHHH
Confidence 6799999999999999999999999843 335555532 11258899999999999999999999999999
Q ss_pred HHHhh-------cCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh--cCCccCHHHHHHHHH
Q 012326 370 IRCQE-------EDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKR--KGKVVEVQDIDRVYR 428 (466)
Q Consensus 370 ~~~~~-------~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~--~~~~It~~~v~~~~~ 428 (466)
..+.. .++.+++++++.|+..+ .||+|.++++|+.+...+... +...||.++|+.++.
T Consensus 176 ~~l~~~~~~~~~~~~~i~~~al~~L~~~~-~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 176 QAMEDKTRGYGGQDIVLPDETRRAIAELV-NGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp HHHHCTTTSSTTSSEECCHHHHHHHHHHH-CSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred HHHHHHhhhhccccCcCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 99887 56789999999999998 699999999999998777533 556899999998875
No 14
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.89 E-value=1.1e-22 Score=204.42 Aligned_cols=126 Identities=14% Similarity=0.222 Sum_probs=108.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.++.+.+++|+++++++...+ +|+++|. +..+++++++||..+.|.|++.+++.+++
T Consensus 111 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~------------~~~i~~~i~sR~~~~~~~~l~~~~~~~~l 178 (340)
T 1sxj_C 111 FKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANY------------AHKLTPALLSQCTRFRFQPLPQEAIERRI 178 (340)
T ss_dssp CEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecC------------ccccchhHHhhceeEeccCCCHHHHHHHH
Confidence 5799999999999999999999999987655 7888876 67899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..+++.+++.+++++++.++..+ +|++|.++++|+.+...+...+...||.++|..+..
T Consensus 179 ~~~~~~~~~~i~~~~~~~i~~~s-~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 179 ANVLVHEKLKLSPNAEKALIELS-NGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp HHHHHTTTCCBCHHHHHHHHHHH-TTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 99999999999999999999999 599999999998775443222334799888876543
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.88 E-value=3.5e-22 Score=198.13 Aligned_cols=120 Identities=23% Similarity=0.327 Sum_probs=103.2
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+++++|||+|.++.+.++.|.+.++++...+ +|+++|. +..+++++.+||..+.|.|++.+++..++
T Consensus 111 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~------------~~~l~~~l~sr~~~~~~~~l~~~~~~~~l 178 (327)
T 1iqp_A 111 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY------------SSKIIEPIQSRCAIFRFRPLRDEDIAKRL 178 (327)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHHTEEEEECCCCCHHHHHHHH
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC------------ccccCHHHHhhCcEEEecCCCHHHHHHHH
Confidence 6799999999999999999999999876655 7777775 56788999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
..++..+++.++++++++++..+ +||+|.++++++.+... ...||.++|..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 179 RYIAENEGLELTEEGLQAILYIA-EGDMRRAINILQAAAAL-----DKKITDENVFMVA 231 (327)
T ss_dssp HHHHHTTTCEECHHHHHHHHHHH-TTCHHHHHHHHHHHHTT-----CSEECHHHHHHHT
T ss_pred HHHHHhcCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 99999999999999999999998 59999999999877432 2356766665543
No 16
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.88 E-value=2.4e-22 Score=198.63 Aligned_cols=121 Identities=25% Similarity=0.394 Sum_probs=105.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.++.+.++.|.+.++++...+ +|++||. +..+++++.+||..+.|.|++.+++.++|
T Consensus 103 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~------------~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 170 (319)
T 2chq_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY------------VSRIIEPIQSRCAVFRFKPVPKEAMKKRL 170 (319)
T ss_dssp CEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESC------------GGGSCHHHHTTCEEEECCCCCHHHHHHHH
T ss_pred ceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC------------hhhcchHHHhhCeEEEecCCCHHHHHHHH
Confidence 5799999999999999999999999876655 7777775 56889999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..++..+++.+++++++.++..+ +||+|.+++.++.+... ...||.++|..+..
T Consensus 171 ~~~~~~~~~~i~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 171 LEICEKEGVKITEDGLEALIYIS-GGDFRKAINALQGAAAI-----GEVVDADTIYQITA 224 (319)
T ss_dssp HHHHHTTCCCBCHHHHHHHHHTT-TTCHHHHHHHHHHHHHS-----SSCBCHHHHHHHTT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHC
Confidence 99999999999999999999988 69999999999887532 34688888876643
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.88 E-value=9.3e-22 Score=196.31 Aligned_cols=210 Identities=18% Similarity=0.171 Sum_probs=153.7
Q ss_pred cccccCCcCCcHHHHHHHHHHHHHH-------HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecc
Q 012326 35 ARDVSEGMVGQLPARKAAGVILQMI-------KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107 (466)
Q Consensus 35 p~~~~~~lvG~~~~k~~l~~~l~~l-------~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~ 107 (466)
|...|++|+|++.+++.+...+... ..+..+++++||+||||||||++|+++|++++ .+|+.++++.+.+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CEEEEEEHHHHHTT
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CCEEEEchHHHhhc
Confidence 4444599999999999998877432 23445568999999999999999999999998 78999999988888
Q ss_pred cCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCC
Q 012326 108 EMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQS 186 (466)
Q Consensus 108 e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
+.+..+ .+..+|..+... .|++||+||+|.+...+.....+
T Consensus 91 ~~g~~~~~~~~~f~~a~~~---~~~vl~iDEid~l~~~~~~~~~~----------------------------------- 132 (322)
T 3eie_A 91 WMGESEKLVKQLFAMAREN---KPSIIFIDQVDALTGTRGEGESE----------------------------------- 132 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHT---SSEEEEEECGGGGSCC------C-----------------------------------
T ss_pred ccchHHHHHHHHHHHHHhc---CCeEEEechhhhhhccCCCCcch-----------------------------------
Confidence 887777 677777766543 37788888887775443211100
Q ss_pred CCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchh
Q 012326 187 GDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIR 266 (466)
Q Consensus 187 ~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~ 266 (466)
..
T Consensus 133 ------------------------------------------------------------------------------~~ 134 (322)
T 3eie_A 133 ------------------------------------------------------------------------------AS 134 (322)
T ss_dssp ------------------------------------------------------------------------------CT
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhh---cCCCe-EEEEeccceeEeecccccCCCC
Q 012326 267 AEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALEN---EMAPI-LVVATNRGITRIRGTNYKSAHG 342 (466)
Q Consensus 267 ~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~---~~~~i-iil~tn~~~~~~~~~~~~~~~~ 342 (466)
. ...+.++..++. ....+ +|.+||+ |..
T Consensus 135 ~------------------------------------~~~~~ll~~l~~~~~~~~~v~vi~atn~------------~~~ 166 (322)
T 3eie_A 135 R------------------------------------RIKTELLVQMNGVGNDSQGVLVLGATNI------------PWQ 166 (322)
T ss_dssp H------------------------------------HHHHHHHHHHGGGGTSCCCEEEEEEESC------------GGG
T ss_pred H------------------------------------HHHHHHHHHhccccccCCceEEEEecCC------------hhh
Confidence 0 112222222221 22334 6667776 778
Q ss_pred CChhHHhhh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 012326 343 IPMDLLDRL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 343 l~~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a 410 (466)
+++++++|| ..+.+.+|+.++..++++..+...+..++++.++.|+..+.+.+.+.+.++++.|...+
T Consensus 167 ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a 235 (322)
T 3eie_A 167 LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 235 (322)
T ss_dssp SCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHH
T ss_pred CCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999 67889999999999999999998888899999999999985447788788887776544
No 18
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.88 E-value=2.5e-21 Score=180.08 Aligned_cols=121 Identities=24% Similarity=0.376 Sum_probs=106.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.+++|||+|.+....+..|.+.++.....+ +|+++|. +..+.+++.+||..+.|.|++.+++.+++
T Consensus 103 ~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~------------~~~~~~~l~~r~~~i~~~~~~~~~~~~~l 170 (226)
T 2chg_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY------------VSRIIEPIQSRCAVFRFKPVPKEAMKKRL 170 (226)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCC------------hhhcCHHHHHhCceeecCCCCHHHHHHHH
Confidence 6799999999999999999999998865555 7777765 56788999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..++...+..+++++++.++..+ .|++|.++++++.++..+ +.||.++|++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 171 LEICEKEGVKITEDGLEALIYIS-GGDFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHH-TTCHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 99999889999999999999988 599999999999886543 6899999998874
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.87 E-value=3.6e-21 Score=194.63 Aligned_cols=121 Identities=31% Similarity=0.405 Sum_probs=106.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.++.+.++.|++.++++...+ +|++|+. +..+++++++||..+.|.|++.+++.+++
T Consensus 120 ~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~------------~~~l~~~l~sr~~~i~~~~l~~~~~~~~l 187 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD------------PQKLPVTILSRCLQFHLKALDVEQIRHQL 187 (373)
T ss_dssp SEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred eEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC------------hHhCcHHHHhheeEeeCCCCCHHHHHHHH
Confidence 5799999999999999999999999877665 7777765 56788999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
..+++.+++.+++++++.+++.+ +|++|.+.++++.+...+ ...||.++|+.+.
T Consensus 188 ~~~~~~~~~~~~~~a~~~l~~~~-~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 188 EHILNEEHIAHEPRALQLLARAA-EGSLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHS-SSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 99999999999999999999998 699999999999875443 3579988887764
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.87 E-value=5.2e-21 Score=190.03 Aligned_cols=128 Identities=23% Similarity=0.257 Sum_probs=109.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC------------------CC-eEEEEeccceeEeecccccCCCCCChhHHhh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM------------------AP-ILVVATNRGITRIRGTNYKSAHGIPMDLLDR 350 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~------------------~~-iiil~tn~~~~~~~~~~~~~~~~l~~~llsR 350 (466)
++++||||+|.++...+..|++.+++.. .+ .+|.+||. +..+.++|++|
T Consensus 91 ~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~------------~~~~~~~l~~R 158 (324)
T 1hqc_A 91 GDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR------------PGLITAPLLSR 158 (324)
T ss_dssp TCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC------------CSSCSCSTTTT
T ss_pred CCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC------------cccCCHHHHhc
Confidence 5799999999999999999999988742 12 36666665 56788899999
Q ss_pred h-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHH
Q 012326 351 L-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRL 429 (466)
Q Consensus 351 ~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~ 429 (466)
| .++.+.+++.+++..++...+...++.+++++++.++..+ .|++|.+.++++.+...+...+...|+.+++..+...
T Consensus 159 ~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 159 FGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRS-RGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp CSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHS-CSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred ccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 9 6899999999999999999999889999999999999998 6999999999999877776667788999999887654
Q ss_pred H
Q 012326 430 F 430 (466)
Q Consensus 430 ~ 430 (466)
+
T Consensus 238 ~ 238 (324)
T 1hqc_A 238 L 238 (324)
T ss_dssp H
T ss_pred h
Confidence 3
No 21
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.87 E-value=1.3e-21 Score=193.65 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=106.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||+|.++...++.|.+.++++...+ +|++||. +..+++++++||..+.|.|++.+++.+++
T Consensus 108 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~------------~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 175 (323)
T 1sxj_B 108 HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ------------SNKIIEPLQSQCAILRYSKLSDEDVLKRL 175 (323)
T ss_dssp CEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred ceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCC------------hhhchhHHHhhceEEeecCCCHHHHHHHH
Confidence 5799999999999999999999999876555 7777775 56889999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..++..+++.+++++++.+++.+ +||+|.++++++.+... ...||.++|..+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~l~~~~-~G~~r~a~~~l~~~~~~-----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 176 LQIIKLEDVKYTNDGLEAIIFTA-EGDMRQAINNLQSTVAG-----HGLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHH-TTCHHHHHHHHHHHHHH-----HSSBCHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc-----CCCcCHHHHHHHHC
Confidence 99999999999999999999998 59999999999987532 24688888887654
No 22
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.87 E-value=4e-21 Score=193.38 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=98.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.|++|||++.++.+.++.|.+.++++.... +|++|++ +..+++++++||..+.|.|++.+++..+|
T Consensus 135 ~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~------------~~~l~~~l~sR~~~~~~~~~~~~~~~~~l 202 (354)
T 1sxj_E 135 YKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDS------------MSPIIAPIKSQCLLIRCPAPSDSEISTIL 202 (354)
T ss_dssp CEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESC------------SCSSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred CeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCC------------HHHHHHHHHhhceEEecCCcCHHHHHHHH
Confidence 6799999999999999999999999876544 8888886 77899999999999999999999999999
Q ss_pred HHHHhhcCCccC-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 012326 369 DIRCQEEDVEMA-EDAKQLLTRVGEGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 369 ~~~~~~~~~~i~-~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a 410 (466)
..+++.+++.++ +++++.+++.+ +||+|.++++|+.+...+
T Consensus 203 ~~~~~~~~~~~~~~~~l~~i~~~~-~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 203 SDVVTNERIQLETKDILKRIAQAS-NGNLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHHHHHTCEECCSHHHHHHHHHH-TTCHHHHHHHHTHHHHTT
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC
Confidence 999999999999 99999999998 699999999999886544
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.87 E-value=1.1e-20 Score=184.49 Aligned_cols=235 Identities=18% Similarity=0.220 Sum_probs=165.0
Q ss_pred CCCcccccCCcCCcHHHHHHHHHHHHHH-Hc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccc
Q 012326 32 SLEARDVSEGMVGQLPARKAAGVILQMI-KE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSE 103 (466)
Q Consensus 32 ~~~p~~~~~~lvG~~~~k~~l~~~l~~l-~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~ 103 (466)
..+|...|++++|++.+++.+...+... .. |..+++++||+||||||||++|+++|+.++ .+++.++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~--~~~~~v~~~~ 86 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN--ATFIRVVGSE 86 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT--CEEEEEEGGG
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehHH
Confidence 3566667799999999999998777542 11 345668999999999999999999999998 7888888888
Q ss_pred eecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhc
Q 012326 104 IFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKE 182 (466)
Q Consensus 104 ~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 182 (466)
+...+.+... .+..++..+... .|++||+||++.+...+.....+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~------------------------------- 132 (285)
T 3h4m_A 87 LVKKFIGEGASLVKDIFKLAKEK---APSIIFIDEIDAIAAKRTDALTG------------------------------- 132 (285)
T ss_dssp GCCCSTTHHHHHHHHHHHHHHHT---CSEEEEEETTHHHHBCCSSSCCG-------------------------------
T ss_pred HHHhccchHHHHHHHHHHHHHHc---CCeEEEEECHHHhcccCccccCC-------------------------------
Confidence 7776666655 455555544332 25566666665554333111000
Q ss_pred ccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCc
Q 012326 183 KVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDT 262 (466)
Q Consensus 183 ~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~ 262 (466)
T Consensus 133 -------------------------------------------------------------------------------- 132 (285)
T 3h4m_A 133 -------------------------------------------------------------------------------- 132 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhh-----cCCCe-EEEEeccceeEeeccc
Q 012326 263 GEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALEN-----EMAPI-LVVATNRGITRIRGTN 336 (466)
Q Consensus 263 ~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~-----~~~~i-iil~tn~~~~~~~~~~ 336 (466)
.+.+.+..+...+.. ...++ +|.+||.
T Consensus 133 --------------------------------------~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~--------- 165 (285)
T 3h4m_A 133 --------------------------------------GDREVQRTLMQLLAEMDGFDARGDVKIIGATNR--------- 165 (285)
T ss_dssp --------------------------------------GGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSC---------
T ss_pred --------------------------------------ccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC---------
Confidence 011222222222221 12234 6666665
Q ss_pred ccCCCCCChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh
Q 012326 337 YKSAHGIPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKR 413 (466)
Q Consensus 337 ~~~~~~l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~ 413 (466)
+..+++++++ || ..+.+.+|+.++..+++...+...+..-+ ..+..++..+.+.+.|.+..++..|...|...
T Consensus 166 ---~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 166 ---PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED-VNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241 (285)
T ss_dssp ---GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT-CCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ---chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc-CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 6788899998 88 57889999999999999998876655422 23677888775458889899999999888888
Q ss_pred cCCccCHHHHHHHHHHHHhH
Q 012326 414 KGKVVEVQDIDRVYRLFLDV 433 (466)
Q Consensus 414 ~~~~It~~~v~~~~~~~~~~ 433 (466)
+...|+.++++.++......
T Consensus 242 ~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 242 LRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp TCSSBCHHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHHHHHhc
Confidence 88999999999999866543
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.86 E-value=1.3e-20 Score=192.84 Aligned_cols=234 Identities=17% Similarity=0.162 Sum_probs=154.4
Q ss_pred CCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeee
Q 012326 28 GLDSSLEARDVSEGMVGQLPARKAAGVILQMIKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMIS 100 (466)
Q Consensus 28 ~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~ 100 (466)
+|.++++|..+ ++++|++.+++.+..++..... ...+++++||+||||||||++|+++|+.++ .+|+.++
T Consensus 104 ~~~~~~~~~~~-~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--~~~~~v~ 180 (389)
T 3vfd_A 104 EIVDNGTAVKF-DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--ATFFNIS 180 (389)
T ss_dssp TTBCCSCCCCG-GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--CEEEEEC
T ss_pred hhhccCCCCCh-HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--CcEEEee
Confidence 57777777777 9999999999999877654321 113458999999999999999999999998 7899998
Q ss_pred ccceecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHh
Q 012326 101 GSEIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEAL 179 (466)
Q Consensus 101 ~~~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 179 (466)
++.+...+.+..+ .+..+|..+... .|++||+||+|.+...+.....
T Consensus 181 ~~~l~~~~~g~~~~~~~~~~~~a~~~---~~~il~iDEid~l~~~~~~~~~----------------------------- 228 (389)
T 3vfd_A 181 AASLTSKYVGEGEKLVRALFAVAREL---QPSIIFIDQVDSLLCERREGEH----------------------------- 228 (389)
T ss_dssp SCCC-------CHHHHHHHHHHHHHS---SSEEEEEETGGGGC-------------------------------------
T ss_pred HHHhhccccchHHHHHHHHHHHHHhc---CCeEEEEECchhhcccCCCccc-----------------------------
Confidence 8877665554444 344444433322 2445555555444222210000
Q ss_pred hhcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhccccccccc
Q 012326 180 GKEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFT 259 (466)
Q Consensus 180 ~~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~ 259 (466)
T Consensus 229 -------------------------------------------------------------------------------- 228 (389)
T 3vfd_A 229 -------------------------------------------------------------------------------- 228 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhc----CCCe-EEEEeccceeEeec
Q 012326 260 GDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENE----MAPI-LVVATNRGITRIRG 334 (466)
Q Consensus 260 ~~~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~----~~~i-iil~tn~~~~~~~~ 334 (466)
......+..|+..++.. ...+ ||.+||+
T Consensus 229 ----------------------------------------~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~------- 261 (389)
T 3vfd_A 229 ----------------------------------------DASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR------- 261 (389)
T ss_dssp ----------------------------------------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC-------
T ss_pred ----------------------------------------hHHHHHHHHHHHHhhcccccCCCCEEEEEecCC-------
Confidence 00122333444444322 2234 6666765
Q ss_pred ccccCCCCCChhHHhhh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHhh
Q 012326 335 TNYKSAHGIPMDLLDRL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLR-YAIHLITAAALASQK 412 (466)
Q Consensus 335 ~~~~~~~~l~~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R-~ai~lL~~a~~~a~~ 412 (466)
+..+++++++|| ..+.+.+|+.++...+|...+...+..++++.+..++..+. |..+ .+..+++.++..+..
T Consensus 262 -----~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~-g~~~~~l~~L~~~a~~~~~r 335 (389)
T 3vfd_A 262 -----PQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTD-GYSGSDLTALAKDAALGPIR 335 (389)
T ss_dssp -----GGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTT-TCCHHHHHHHHHHHTTHHHH
T ss_pred -----chhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence 678899999999 57889999999999999999999999999999999999984 6555 444555555544432
Q ss_pred h------------cCCccCHHHHHHHHHH
Q 012326 413 R------------KGKVVEVQDIDRVYRL 429 (466)
Q Consensus 413 ~------------~~~~It~~~v~~~~~~ 429 (466)
. +...|+.+|+..++..
T Consensus 336 el~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 336 ELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp TSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred hhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 2 3457999999888764
No 25
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.5e-20 Score=186.11 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=155.7
Q ss_pred CcccccCCcCCcHHHHHHHHHHHHH-HH------cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 34 EARDVSEGMVGQLPARKAAGVILQM-IK------EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 34 ~p~~~~~~lvG~~~~k~~l~~~l~~-l~------~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
.|...|++|+|++++++.+...+.. +. .+..+++++||+||||||||++|+++|+++.. .+|+.++++++.+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-STFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-CEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-CcEEEEEhHHHHh
Confidence 3555669999999999999887753 22 23445699999999999999999999999832 6899999999888
Q ss_pred ccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccC
Q 012326 107 LEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQ 185 (466)
Q Consensus 107 ~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
.+.+..+ .++.+|..+... .|++||+||+|++.+.+.....+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~---~~~vl~iDEid~l~~~~~~~~~~---------------------------------- 127 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLAREN---KPSIIFIDEIDSLCGSRSENESE---------------------------------- 127 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHT---SSEEEEEETTTGGGCCSSSCCTT----------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHhc---CCcEEEeecHHHhccccccccch----------------------------------
Confidence 8887776 677777666532 48888888888875554221110
Q ss_pred CCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccch
Q 012326 186 SGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEI 265 (466)
Q Consensus 186 ~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei 265 (466)
.
T Consensus 128 -------------------------------------------------------------------------------~ 128 (322)
T 1xwi_A 128 -------------------------------------------------------------------------------A 128 (322)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhh---cCCCe-EEEEeccceeEeecccccCCC
Q 012326 266 RAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALEN---EMAPI-LVVATNRGITRIRGTNYKSAH 341 (466)
Q Consensus 266 ~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~---~~~~i-iil~tn~~~~~~~~~~~~~~~ 341 (466)
.. ...+.++..++. ....+ +|.+||+ |.
T Consensus 129 ~~------------------------------------~~~~~ll~~ld~~~~~~~~v~vI~atn~------------~~ 160 (322)
T 1xwi_A 129 AR------------------------------------RIKTEFLVQMQGVGVDNDGILVLGATNI------------PW 160 (322)
T ss_dssp HH------------------------------------HHHHHHHHHHHCSSSCCTTEEEEEEESC------------TT
T ss_pred HH------------------------------------HHHHHHHHHHhcccccCCCEEEEEecCC------------cc
Confidence 00 011122222222 12234 6667776 78
Q ss_pred CCChhHHhhh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 012326 342 GIPMDLLDRL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 342 ~l~~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a 410 (466)
.+++++++|| ..+.+.+|+.++..+|++..+...+..+++..++.|++.+.+-+.+.+-.+++.|+..|
T Consensus 161 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a 230 (322)
T 1xwi_A 161 VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQP 230 (322)
T ss_dssp TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHH
T ss_pred cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 8999999999 77889999999999999999988888889999999999985446777777777776444
No 26
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.86 E-value=5.9e-21 Score=196.87 Aligned_cols=336 Identities=17% Similarity=0.221 Sum_probs=165.5
Q ss_pred ccCCcCCcHHHHHHHHHHHHH-HHc--------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecc-
Q 012326 38 VSEGMVGQLPARKAAGVILQM-IKE--------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL- 107 (466)
Q Consensus 38 ~~~~lvG~~~~k~~l~~~l~~-l~~--------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~- 107 (466)
+.++|+||+++|+++..++.. ++. ...+++++||+||||||||++|+++|+.++ .||+.++++.+.+.
T Consensus 13 Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~--~~~~~v~~~~~~~~g 90 (444)
T 1g41_A 13 LDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKFTEVG 90 (444)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEGGGGC---
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC--CCceeecchhhcccc
Confidence 336899999999999877643 221 113468999999999999999999999998 78999999998884
Q ss_pred cCCH-HH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccC
Q 012326 108 EMSK-TE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQ 185 (466)
Q Consensus 108 e~~~-~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
+++. .+ .++.+|..+... +++||++.+..... .+ ...+.+. .++..+ +++.
T Consensus 91 ~vG~d~e~~lr~lf~~a~~~-------~~~De~d~~~~~~~---~~-~e~rvl~--------------~LL~~~--dg~~ 143 (444)
T 1g41_A 91 YVGKEVDSIIRDLTDSAMKL-------VRQQEIAKNRARAE---DV-AEERILD--------------ALLPPA--KNQW 143 (444)
T ss_dssp -CCCCTHHHHHHHHHHHHHH-------HHHHHHHSCC-------------------------------------------
T ss_pred eeeccHHHHHHHHHHHHHhc-------chhhhhhhhhccch---hh-HHHHHHH--------------HHHHHh--hccc
Confidence 6764 34 788888776543 23677776542221 10 1111111 111111 0111
Q ss_pred CCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhccc-ccccccCC---
Q 012326 186 SGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQG-FLALFTGD--- 261 (466)
Q Consensus 186 ~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~-~~~l~~~~--- 261 (466)
....+ +..+||+++.+++++.|++++|. ..++++|+..- .|.+++..--..++ ...-+. |..++.+.
T Consensus 144 ~~~~v-~a~~TN~~~~ld~aL~rggr~D~----~i~i~lP~~~~-~~~ei~~~~g~~~~---~~~~~~~~~~~~~~~~~~ 214 (444)
T 1g41_A 144 GEVEN-HDSHSSTRQAFRKKLREGQLDDK----EIEIDVSAGVS-MGVEIMAPPGMEEM---TNQLQSLFQNLGSDKTKK 214 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-ccccccCHHHHHHHHHcCCCcce----EEEEcCCCCcc-chhhhhcCCChHHH---HHHHHHHHHhhcCCCCcc
Confidence 11112 22339999999999999999999 66777776531 12222211000000 000000 00111110
Q ss_pred ------------------ccchhHHH-HHHHHHHHHHHHhhcccccccceeeeeccccccH------------HHHHHHH
Q 012326 262 ------------------TGEIRAEV-REQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDV------------ECFSFLN 310 (466)
Q Consensus 262 ------------------~~ei~~~~-r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~------------~~~~~L~ 310 (466)
+-.-.+.+ ++++..+ + . .+++++||+|++.. ..+.+|+
T Consensus 215 ~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~a-----e--~----~~il~~DEidki~~~~~~~~~D~s~egvq~aLL 283 (444)
T 1g41_A 215 RKMKIKDALKALIDDEAAKLINPEELKQKAIDAV-----E--Q----NGIVFIDEIDKICKKGEYSGADVSREGVQRDLL 283 (444)
T ss_dssp -----------CCGGGSCSSCCHHHHHHHHHHHH-----H--H----HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHh-----c--c----CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHH
Confidence 00001111 1222111 0 1 46999999999853 2578999
Q ss_pred HHhhhc----------CCCeEEEEeccceeEeecccccCCCCCChhHHhhhhh-hccCCCCHHHHHHHHHH---------
Q 012326 311 RALENE----------MAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLI-ISTKPYTRDEIRKILDI--------- 370 (466)
Q Consensus 311 ~~le~~----------~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~-i~~~pl~~~el~~iL~~--------- 370 (466)
+.++.. ...++++||-. .+..+|..+.|+|++|+.+ +.|.+|+.+++..|+..
T Consensus 284 ~~le~~~~~~~~~~~d~~~ilfI~~ga-------f~~~~~~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~ 356 (444)
T 1g41_A 284 PLVEGSTVSTKHGMVKTDHILFIASGA-------FQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQY 356 (444)
T ss_dssp HHHHCCEEEETTEEEECTTCEEEEEEC-------CSSCCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHH
T ss_pred HHhcccccccccceecCCcEEEEeccc-------cccCChhhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHH
Confidence 999863 23343333310 0122466677899999955 89999999999999941
Q ss_pred --HHhhcC--CccCHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHHhhh------cCCccCHHHHHHHHHH
Q 012326 371 --RCQEED--VEMAEDAKQLLTRVG-------EGTSLRYAIHLITAAALASQKR------KGKVVEVQDIDRVYRL 429 (466)
Q Consensus 371 --~~~~~~--~~i~~~~l~~l~~~a-------~~g~~R~ai~lL~~a~~~a~~~------~~~~It~~~v~~~~~~ 429 (466)
.+..++ +.++++++..|++.+ .+.++|.+-+.++.++.-...+ ..-.||.+.|+....-
T Consensus 357 ~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 357 KALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 432 (444)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTT
T ss_pred HHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCc
Confidence 122223 579999999999864 3588999888888765332211 1234888888876653
No 27
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.86 E-value=1.4e-20 Score=190.38 Aligned_cols=211 Identities=18% Similarity=0.163 Sum_probs=144.6
Q ss_pred cccccCCcCCcHHHHHHHHHHHHHH-------HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecc
Q 012326 35 ARDVSEGMVGQLPARKAAGVILQMI-------KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107 (466)
Q Consensus 35 p~~~~~~lvG~~~~k~~l~~~l~~l-------~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~ 107 (466)
|...|++|+|++.+++.+...+..- ..+..+++++||+||||||||++|+++|++++ .||+.+++..+.+.
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVSK 123 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CEEEEEEHHHHHSC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEEEeeHHHHhhh
Confidence 3444599999999999998776432 22344568999999999999999999999998 78998888877766
Q ss_pred cCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCC
Q 012326 108 EMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQS 186 (466)
Q Consensus 108 e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
+.+..+ .++.+|..+... .|++||+||+|.+.+.+.....+
T Consensus 124 ~~g~~~~~~~~~f~~a~~~---~~~vl~iDEid~l~~~r~~~~~~----------------------------------- 165 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMAREN---KPSIIFIDQVDALTGTRGEGESE----------------------------------- 165 (355)
T ss_dssp C---CHHHHHHHHHHHHHT---SSEEEEEECGGGGTC------CT-----------------------------------
T ss_pred hcchHHHHHHHHHHHHHHc---CCeEEEEechHhhcccCCCCcch-----------------------------------
Confidence 655554 455555544321 35666666666553332110000
Q ss_pred CCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchh
Q 012326 187 GDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIR 266 (466)
Q Consensus 187 ~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~ 266 (466)
..
T Consensus 166 ------------------------------------------------------------------------------~~ 167 (355)
T 2qp9_X 166 ------------------------------------------------------------------------------AS 167 (355)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhh---cCCCe-EEEEeccceeEeecccccCCCC
Q 012326 267 AEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALEN---EMAPI-LVVATNRGITRIRGTNYKSAHG 342 (466)
Q Consensus 267 ~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~---~~~~i-iil~tn~~~~~~~~~~~~~~~~ 342 (466)
....+.|+..++. ....+ ||.+||+ |..
T Consensus 168 ------------------------------------~~~~~~ll~~l~~~~~~~~~v~vI~atn~------------~~~ 199 (355)
T 2qp9_X 168 ------------------------------------RRIKTELLVQMNGVGNDSQGVLVLGATNI------------PWQ 199 (355)
T ss_dssp ------------------------------------HHHHHHHHHHHHHCC---CCEEEEEEESC------------GGG
T ss_pred ------------------------------------HHHHHHHHHHhhcccccCCCeEEEeecCC------------ccc
Confidence 1112333333332 12334 6667776 778
Q ss_pred CChhHHhhh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 012326 343 IPMDLLDRL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ 411 (466)
Q Consensus 343 l~~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~ 411 (466)
+++++++|| ..+.+.+|+.++...||..++...+..+++..++.|+..+.+-+.+.+.++++.|...|.
T Consensus 200 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 200 LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 899999999 778899999999999999999888888899999999999853378888888888776554
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.86 E-value=2e-20 Score=180.04 Aligned_cols=231 Identities=20% Similarity=0.241 Sum_probs=149.6
Q ss_pred cccccCCcCCcHHHHHHHHHHHHHHHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecc
Q 012326 35 ARDVSEGMVGQLPARKAAGVILQMIKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107 (466)
Q Consensus 35 p~~~~~~lvG~~~~k~~l~~~l~~l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~ 107 (466)
|...|++++|++.+++.+..++..+.. |..+++++||+||||||||++|+++|++++ .|++.++++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~~~~~~~~~~~ 78 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--VPFLAMAGAEFVEV 78 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--CCEEEEETTTTSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEEechHHHHhh
Confidence 344569999999999999988877654 234568999999999999999999999998 68888888877665
Q ss_pred cCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCC
Q 012326 108 EMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQS 186 (466)
Q Consensus 108 e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
..+... .+..+|..+... .|++||+||+|.+...+.....+
T Consensus 79 ~~~~~~~~~~~~~~~a~~~---~~~vl~iDeid~l~~~~~~~~~~----------------------------------- 120 (262)
T 2qz4_A 79 IGGLGAARVRSLFKEARAR---APCIVYIDEIDAVGKKRSTTMSG----------------------------------- 120 (262)
T ss_dssp STTHHHHHHHHHHHHHHHT---CSEEEEEECC------------------------------------------------
T ss_pred ccChhHHHHHHHHHHHHhc---CCeEEEEeCcchhhccccccccC-----------------------------------
Confidence 555544 455555544322 25566666666553332110000
Q ss_pred CCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchh
Q 012326 187 GDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIR 266 (466)
Q Consensus 187 ~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~ 266 (466)
+ .
T Consensus 121 -------------------------------------------------------------------~----~------- 122 (262)
T 2qz4_A 121 -------------------------------------------------------------------F----S------- 122 (262)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------c----c-------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHhhcccccccceeeeeccccccHH---HHHHHHHHhhh--cCCCe-EEEEeccceeEeecccccCC
Q 012326 267 AEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVE---CFSFLNRALEN--EMAPI-LVVATNRGITRIRGTNYKSA 340 (466)
Q Consensus 267 ~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~---~~~~L~~~le~--~~~~i-iil~tn~~~~~~~~~~~~~~ 340 (466)
+.+ .+..++..++. ....+ +|.+||. +
T Consensus 123 -----------------------------------~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~------------~ 155 (262)
T 2qz4_A 123 -----------------------------------NTEEEQTLNQLLVEMDGMGTTDHVIVLASTNR------------A 155 (262)
T ss_dssp ---------------------------------------CHHHHHHHHHHHTCCTTCCEEEEEEESC------------G
T ss_pred -----------------------------------chhHHHHHHHHHHHhhCcCCCCCEEEEecCCC------------h
Confidence 011 11222222222 12234 6666665 5
Q ss_pred CCCChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCC
Q 012326 341 HGIPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDA-KQLLTRVGEGTSLRYAIHLITAAALASQKRKGK 416 (466)
Q Consensus 341 ~~l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~-l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~ 416 (466)
..+++++++ || ..+.+.+|+.++..+++...+...+...+.+. +..++..+..-+.+.+.++++.|+..|..++..
T Consensus 156 ~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~ 235 (262)
T 2qz4_A 156 DILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHT 235 (262)
T ss_dssp GGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-------
T ss_pred hhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 677788888 88 67889999999999999999998888877664 577888774345678888888888777777788
Q ss_pred ccCHHHHHHHHHHH
Q 012326 417 VVEVQDIDRVYRLF 430 (466)
Q Consensus 417 ~It~~~v~~~~~~~ 430 (466)
.|+.+++..++.-.
T Consensus 236 ~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 236 SVHTLNFEYAVERV 249 (262)
T ss_dssp -CCBCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999887644
No 29
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.85 E-value=1.2e-20 Score=177.32 Aligned_cols=121 Identities=31% Similarity=0.401 Sum_probs=105.6
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
+.+++|||+|.++.+.++.|.+.+++....+ +|++|+. +..+++++++||..+.+.|++.+++.+++
T Consensus 127 ~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~------------~~~~~~~l~~r~~~i~l~~l~~~e~~~~l 194 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD------------PQKLPVTILSRCLQFHLKALDVEQIRHQL 194 (250)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred ceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC------------hHhCCHHHHHHhhhccCCCCCHHHHHHHH
Confidence 5799999999999999999999998865544 7777765 55778899999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
..++...+..+++++++.+++.+ .|++|.+.++++.+... +...||.++|++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~-~G~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 195 EHILNEEHIAHEPRALQLLARAA-EGSLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHTTCCBCHHHHHHHHHHH-TTCHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 99999989999999999999999 69999999999987433 33589999998875
No 30
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.85 E-value=1.1e-21 Score=215.35 Aligned_cols=218 Identities=16% Similarity=0.243 Sum_probs=147.1
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHHH--------HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQMI--------KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~l--------~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
..|...|+++.|.+++|+.+.+.+... ..|..+++++|||||||||||++|+++|.+++ .||+.++++++
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--~~f~~v~~~~l 547 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 547 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--CEEEECCHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--CceEEeccchh
Confidence 346677899999999999998776542 22566789999999999999999999999998 89999999999
Q ss_pred ecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcc
Q 012326 105 FSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEK 183 (466)
Q Consensus 105 ~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
.+.|+++++ .++++|..|... .||+||+||+|++...|..+.++ .......+...++..+ ++
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~---~P~IifiDEiDsl~~~R~~~~~~------------~~~~~~rv~~~lL~~m--dg 610 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQA---APCVLFFDELDSIAKARGGNIGD------------GGGAADRVINQILTEM--DG 610 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTT---CSEEEECSCGGGCC--------------------------CHHHHHHHHHH--HS
T ss_pred hccccchHHHHHHHHHHHHHHc---CCceeechhhhHHhhccCCCCCC------------CchHHHHHHHHHHHHH--hC
Confidence 999999999 899999988754 49999999999999887543211 0000111223344444 45
Q ss_pred cCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcch-------hhHHHHhhhcccccc
Q 012326 184 VQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTL-------HEIDVINSRTQGFLA 256 (466)
Q Consensus 184 ~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l-------~~ld~~~~~~~~~~~ 256 (466)
+...+.|+|.++||+++.+|+++.||+|||. ..++|+| +...|..++..+.- -+++.+...+.||++
T Consensus 611 ~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~----~i~v~lP--d~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SG 684 (806)
T 3cf2_A 611 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQ----LIYIPLP--DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684 (806)
T ss_dssp SCSSSSEEEECC-CCSSSSCHHHHSTTTSCC----EEEC-------CHHHHTTTTTSSCC--CCC---------------
T ss_pred CCCCCCEEEEEeCCCchhCCHhHcCCCcceE----EEEECCc--CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCH
Confidence 5556679999999999999999999999998 7788888 45677777743321 156778888888876
Q ss_pred cccCCccchhHHHHHHHHHHHHHHH
Q 012326 257 LFTGDTGEIRAEVREQIDTKVAEWR 281 (466)
Q Consensus 257 l~~~~~~ei~~~~r~~i~~~~~~~~ 281 (466)
.+|..-++++....+.+..
T Consensus 685 ------adi~~l~~~A~~~a~r~~~ 703 (806)
T 3cf2_A 685 ------ADLTEICQRACKLAIRESI 703 (806)
T ss_dssp -------CHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHH
Confidence 6777777777666665544
No 31
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.85 E-value=2.6e-21 Score=205.17 Aligned_cols=122 Identities=15% Similarity=0.182 Sum_probs=99.1
Q ss_pred cceeeeeccccccHH---HHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHH
Q 012326 290 PGVLFIDEVHMLDVE---CFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRK 366 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~---~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~ 366 (466)
++|+||||+|.+... .+..|.+.++....|+++++++. .....+++.+||..+.|.+++.+++.+
T Consensus 149 ~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~------------~~~~l~~l~~r~~~i~f~~~~~~~~~~ 216 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNER------------NLPKMRPFDRVCLDIQFRRPDANSIKS 216 (516)
T ss_dssp SEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCT------------TSSTTGGGTTTSEEEECCCCCHHHHHH
T ss_pred CeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCC------------CCccchhhHhceEEEEeCCCCHHHHHH
Confidence 679999999999663 45788888888766765544432 112335688999999999999999999
Q ss_pred HHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHH
Q 012326 367 ILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRL 429 (466)
Q Consensus 367 iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~ 429 (466)
+|..++..+++.+++++++.|++.+ .||+|.++++|+.++. +...|+.++++.+...
T Consensus 217 ~L~~i~~~~~~~i~~~~l~~la~~s-~GdiR~~i~~L~~~~~-----~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 217 RLMTIAIREKFKLDPNVIDRLIQTT-RGDIRQVINLLSTIST-----TTKTINHENINEISKA 273 (516)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHT-TTCHHHHHHHHTHHHH-----HSSCCCTTHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHh-----cCCCCchHHHHHHHHh
Confidence 9999999999999999999999998 5999999999987642 4567998998887653
No 32
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.85 E-value=1.5e-19 Score=181.30 Aligned_cols=139 Identities=21% Similarity=0.273 Sum_probs=106.9
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEec--------cceeEeecccccCCCCCChhHHhhh-hhhccCCCC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATN--------RGITRIRGTNYKSAHGIPMDLLDRL-LIISTKPYT 360 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn--------~~~~~~~~~~~~~~~~l~~~llsR~-~~i~~~pl~ 360 (466)
..|+||||+|.+.......|...++.....+++-... -..+.+.+++ ..+..+++++++|| ..+.|.|++
T Consensus 103 ~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at-~~~~~Ls~~l~sR~~l~~~Ld~~~ 181 (334)
T 1in4_A 103 GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT-TRSGLLSSPLRSRFGIILELDFYT 181 (334)
T ss_dssp TCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEE-SCGGGSCHHHHTTCSEEEECCCCC
T ss_pred CCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEec-CCcccCCHHHHHhcCceeeCCCCC
Confidence 4699999999998877777777766432111100000 0001122211 22678999999999 567899999
Q ss_pred HHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 361 RDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 361 ~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
.+++.++|+..++..++.++++++.+|++.+ +|++|.++++|+.+...|...+...||.++++.+....
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~-~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRS-RGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 9999999999999889999999999999998 69999999999999888887888899999999998764
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=2.5e-20 Score=184.04 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=97.6
Q ss_pred cceeeeeccccc---------cHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhh-hhhccCC
Q 012326 290 PGVLFIDEVHML---------DVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIISTKP 358 (466)
Q Consensus 290 ~~vl~iDEi~~l---------~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~~~p 358 (466)
++|+||||+|.+ +.+.++.|++.+++...++ +|+++|.... .....+.++|++|| ..++|.|
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~-------~~~~~~~~~l~~R~~~~i~~~~ 203 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRM-------ENFFQSNPGFRSRIAHHIEFPD 203 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHH-------HHHHHHSTTHHHHEEEEEEECC
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHH-------HHHHhhCHHHHHhCCeEEEcCC
Confidence 579999999987 7788999999999876665 6666653100 00113458999999 8999999
Q ss_pred CCHHHHHHHHHHHHhhcCCccCHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHHhhh----cCCccCHHHHH
Q 012326 359 YTRDEIRKILDIRCQEEDVEMAEDAKQLLTRV-------GEGTSLRYAIHLITAAALASQKR----KGKVVEVQDID 424 (466)
Q Consensus 359 l~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~-------a~~g~~R~ai~lL~~a~~~a~~~----~~~~It~~~v~ 424 (466)
|+.+++..++...+...++.+++++++.++.. ...||+|.+.++++.+...+... +...++.+++.
T Consensus 204 ~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 204 YSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 99999999999999999999999999999987 33589999999999987543221 23455555544
No 34
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.84 E-value=1.7e-19 Score=177.32 Aligned_cols=233 Identities=17% Similarity=0.172 Sum_probs=157.8
Q ss_pred CCCCCCcccccCCcCCcHHHHHHHHHHHHHHHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeec
Q 012326 29 LDSSLEARDVSEGMVGQLPARKAAGVILQMIKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISG 101 (466)
Q Consensus 29 ~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~ 101 (466)
+..+++|..+ ++++|++.+++.+...+..-.. ...+++++||+||||||||++|+++|+.++ .+|+.+++
T Consensus 11 ~~~~~~~~~~-~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~~~~~i~~ 87 (297)
T 3b9p_A 11 IVEGGAKVEW-TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--ATFLNISA 87 (297)
T ss_dssp TBCCSSCCCG-GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--CEEEEEES
T ss_pred hccCCCCCCH-HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CCeEEeeH
Confidence 4445555555 9999999999999877654211 112468999999999999999999999997 68888888
Q ss_pred cceecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhh
Q 012326 102 SEIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALG 180 (466)
Q Consensus 102 ~~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 180 (466)
+.+...+.+..+ .++.++..+... .|++||+||+|.+...+.....
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~------------------------------ 134 (297)
T 3b9p_A 88 ASLTSKYVGDGEKLVRALFAVARHM---QPSIIFIDEVDSLLSERSSSEH------------------------------ 134 (297)
T ss_dssp TTTSSSSCSCHHHHHHHHHHHHHHT---CSEEEEEETGGGTSBCC-----------------------------------
T ss_pred HHHhhcccchHHHHHHHHHHHHHHc---CCcEEEeccHHHhccccccCcc------------------------------
Confidence 877666555544 444555443321 3556666665555333211000
Q ss_pred hcccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccC
Q 012326 181 KEKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTG 260 (466)
Q Consensus 181 ~~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~ 260 (466)
T Consensus 135 -------------------------------------------------------------------------------- 134 (297)
T 3b9p_A 135 -------------------------------------------------------------------------------- 134 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhcC-----CCe-EEEEeccceeEeec
Q 012326 261 DTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEM-----API-LVVATNRGITRIRG 334 (466)
Q Consensus 261 ~~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~~-----~~i-iil~tn~~~~~~~~ 334 (466)
......++.|+..++... ..+ +|.+||+
T Consensus 135 ---------------------------------------~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~------- 168 (297)
T 3b9p_A 135 ---------------------------------------EASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR------- 168 (297)
T ss_dssp ---------------------------------------CCSHHHHHHHHHHHHHCC------CEEEEEEESC-------
T ss_pred ---------------------------------------hHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC-------
Confidence 001122333444444322 123 6667776
Q ss_pred ccccCCCCCChhHHhhh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHhh
Q 012326 335 TNYKSAHGIPMDLLDRL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLR-YAIHLITAAALASQK 412 (466)
Q Consensus 335 ~~~~~~~~l~~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R-~ai~lL~~a~~~a~~ 412 (466)
|..+++++++|| ..+.+.+++.++...++...+...+..++++.++.++..+. |..+ ....+++.++..+..
T Consensus 169 -----~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~-g~~~~~l~~l~~~a~~~a~r 242 (297)
T 3b9p_A 169 -----PQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITD-GYSGSDLTALAKDAALEPIR 242 (297)
T ss_dssp -----GGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTT-TCCHHHHHHHHHHHTTHHHH
T ss_pred -----hhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence 678899999999 67889999999999999999998888899999999999984 6555 444677776655543
Q ss_pred hc------------CCccCHHHHHHHHHH
Q 012326 413 RK------------GKVVEVQDIDRVYRL 429 (466)
Q Consensus 413 ~~------------~~~It~~~v~~~~~~ 429 (466)
+. ...|+.+|+..++..
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 243 ELNVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp TCC--------CCCCCCCCHHHHHHHTTS
T ss_pred HHhhhhcccccccccCCcCHHHHHHHHHH
Confidence 22 357999999888753
No 35
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.84 E-value=6.7e-20 Score=176.56 Aligned_cols=234 Identities=21% Similarity=0.287 Sum_probs=164.4
Q ss_pred CCCCCcccccCCcCCcHHHHHHHHHHHHHHHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecc
Q 012326 30 DSSLEARDVSEGMVGQLPARKAAGVILQMIKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGS 102 (466)
Q Consensus 30 ~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~ 102 (466)
.+.+.+..+ ++++|++.+++.+..++..+.. +...+++++|+||||||||++|+++++.++ .||+.++++
T Consensus 3 ~~~~~~~~~-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~~i~~~ 79 (257)
T 1lv7_A 3 TEDQIKTTF-ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGS 79 (257)
T ss_dssp EECSSCCCG-GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CCEEEECSC
T ss_pred CccCCCCCH-HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CCEEEEeHH
Confidence 344444444 9999999999999888776653 223458999999999999999999999997 689999998
Q ss_pred ceecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhh
Q 012326 103 EIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGK 181 (466)
Q Consensus 103 ~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 181 (466)
.+.+...+..+ .+..+|..+... .|+++|+||+|.+...+.....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~a~~~---~~~il~iDeid~l~~~~~~~~~~------------------------------ 126 (257)
T 1lv7_A 80 DFVEMFVGVGASRVRDMFEQAKKA---APCIIFIDEIDAVGRQRGAGLGG------------------------------ 126 (257)
T ss_dssp SSTTSCCCCCHHHHHHHHHHHHTT---CSEEEEETTHHHHTCCCSTTSCC------------------------------
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHc---CCeeehhhhhhhhccCCCCCcCC------------------------------
Confidence 88777666555 567777766542 37888888888775443211100
Q ss_pred cccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCC
Q 012326 182 EKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGD 261 (466)
Q Consensus 182 ~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~ 261 (466)
+
T Consensus 127 ------------------------------------------------------------------------------~- 127 (257)
T 1lv7_A 127 ------------------------------------------------------------------------------G- 127 (257)
T ss_dssp ------------------------------------------------------------------------------T-
T ss_pred ------------------------------------------------------------------------------C-
Confidence 0
Q ss_pred ccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhh--cCCC-eEEEEeccceeEeeccccc
Q 012326 262 TGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALEN--EMAP-ILVVATNRGITRIRGTNYK 338 (466)
Q Consensus 262 ~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~--~~~~-iiil~tn~~~~~~~~~~~~ 338 (466)
..... ..++.++..++. ...+ ++|.+||.
T Consensus 128 ----~~~~~---------------------------------~~~~~ll~~l~~~~~~~~~~vI~~tn~----------- 159 (257)
T 1lv7_A 128 ----HDERE---------------------------------QTLNQMLVEMDGFEGNEGIIVIAATNR----------- 159 (257)
T ss_dssp ----TCHHH---------------------------------HHHHHHHHHHHTCCSSSCEEEEEEESC-----------
T ss_pred ----chHHH---------------------------------HHHHHHHHHhhCcccCCCEEEEEeeCC-----------
Confidence 00000 111122222221 1223 36677776
Q ss_pred CCCCCChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHH-HHHHHHhcCCC-CHHHHHHHHHHHHHHHhhh
Q 012326 339 SAHGIPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDA-KQLLTRVGEGT-SLRYAIHLITAAALASQKR 413 (466)
Q Consensus 339 ~~~~l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~-l~~l~~~a~~g-~~R~ai~lL~~a~~~a~~~ 413 (466)
|..+++.+++ || ..+.+.+|+.++..++++..++... +++++ +..++..+ .| +.|.+.++++.|...|...
T Consensus 160 -~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~-~G~~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 160 -PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGT-PGFSGADLANLVNEAALFAARG 235 (257)
T ss_dssp -TTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred -chhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHh
Confidence 7788888887 77 5678899999999999988876543 43333 56777777 48 9999999999999888888
Q ss_pred cCCccCHHHHHHHHHHH
Q 012326 414 KGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 414 ~~~~It~~~v~~~~~~~ 430 (466)
+...|+.+|++.++...
T Consensus 236 ~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 236 NKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp TCSSBCHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHH
Confidence 88999999999988643
No 36
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.84 E-value=2.3e-19 Score=181.52 Aligned_cols=234 Identities=19% Similarity=0.162 Sum_probs=160.9
Q ss_pred CCCCCcccccCCcCCcHHHHHHHHHHHHH-HHc------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecc
Q 012326 30 DSSLEARDVSEGMVGQLPARKAAGVILQM-IKE------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGS 102 (466)
Q Consensus 30 ~~~~~p~~~~~~lvG~~~~k~~l~~~l~~-l~~------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~ 102 (466)
..+++|..+ ++++|++.+++.+...+.. +.. ...+++++||+||||||||++|+++|+.++ .+|+.++++
T Consensus 75 ~~~~~~~~~-~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~~~~i~~~ 151 (357)
T 3d8b_A 75 MDHGPPVNW-EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--ATFFSISAS 151 (357)
T ss_dssp BCCSCCCCG-GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--CEEEEEEGG
T ss_pred ccCCCCCCH-HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--CeEEEEehH
Confidence 344555555 9999999999999887764 221 113458999999999999999999999997 789999998
Q ss_pred ceecccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhh
Q 012326 103 EIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGK 181 (466)
Q Consensus 103 ~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 181 (466)
.+.+.+.+..+ .+..+|..+... .|++||+||+|.+...+......
T Consensus 152 ~l~~~~~g~~~~~~~~~~~~a~~~---~~~vl~iDEid~l~~~~~~~~~~------------------------------ 198 (357)
T 3d8b_A 152 SLTSKWVGEGEKMVRALFAVARCQ---QPAVIFIDEIDSLLSQRGDGEHE------------------------------ 198 (357)
T ss_dssp GGCCSSTTHHHHHHHHHHHHHHHT---CSEEEEEETHHHHTBC------C------------------------------
T ss_pred HhhccccchHHHHHHHHHHHHHhc---CCeEEEEeCchhhhccCCCCcch------------------------------
Confidence 88777766655 455555544321 35666666666653332110000
Q ss_pred cccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCC
Q 012326 182 EKVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGD 261 (466)
Q Consensus 182 ~~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~ 261 (466)
T Consensus 199 -------------------------------------------------------------------------------- 198 (357)
T 3d8b_A 199 -------------------------------------------------------------------------------- 198 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhh----cCCCe-EEEEeccceeEeeccc
Q 012326 262 TGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALEN----EMAPI-LVVATNRGITRIRGTN 336 (466)
Q Consensus 262 ~~ei~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~----~~~~i-iil~tn~~~~~~~~~~ 336 (466)
.....++.|+..++. ....+ +|.+||.
T Consensus 199 ---------------------------------------~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~--------- 230 (357)
T 3d8b_A 199 ---------------------------------------SSRRIKTEFLVQLDGATTSSEDRILVVGATNR--------- 230 (357)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHC----CCCCEEEEEEESC---------
T ss_pred ---------------------------------------HHHHHHHHHHHHHhcccccCCCCEEEEEecCC---------
Confidence 001122233333332 12344 6667775
Q ss_pred ccCCCCCChhHHhhh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh---
Q 012326 337 YKSAHGIPMDLLDRL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQK--- 412 (466)
Q Consensus 337 ~~~~~~l~~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~--- 412 (466)
+..+++++++|| ..+.+.+++.++..+++...+...+..++++.++.++..+.+-+.+.+..+++.++..+..
T Consensus 231 ---~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 231 ---PQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp ---GGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred ---hhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 667889999999 4788999999999999999999888899999999999998422677777777777644432
Q ss_pred ---------hcCCccCHHHHHHHHHHH
Q 012326 413 ---------RKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 413 ---------~~~~~It~~~v~~~~~~~ 430 (466)
.....|+.+|+..++.-.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~al~~~ 334 (357)
T 3d8b_A 308 TADIATITPDQVRPIAYIDFENAFRTV 334 (357)
T ss_dssp C----------CCCBCHHHHHHHHHHH
T ss_pred hhhhccccccccCCcCHHHHHHHHHhc
Confidence 234679999999988655
No 37
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.84 E-value=6.2e-20 Score=185.83 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=111.7
Q ss_pred cceeeeeccccccHH--HHHHHHHHhhhc-----CCC-eEEEEeccceeEeecccccCCCCCChhHHhhh--hhhccCCC
Q 012326 290 PGVLFIDEVHMLDVE--CFSFLNRALENE-----MAP-ILVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIISTKPY 359 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~--~~~~L~~~le~~-----~~~-iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~~~pl 359 (466)
+.+++|||+|.+... .+..|..+++.. ..+ .+|++||... ....+.+.+++|| ..+.|+||
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~---------~~~~l~~~l~~r~~~~~i~l~~l 201 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG---------FVENLEPRVKSSLGEVELVFPPY 201 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST---------TSSSSCHHHHTTTTSEECCBCCC
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc---------hHhhhCHHHHhcCCCeEEeeCCC
Confidence 569999999999765 556665555432 223 4777776510 0157788999999 57999999
Q ss_pred CHHHHHHHHHHHHhh--cCCccCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhH--
Q 012326 360 TRDEIRKILDIRCQE--EDVEMAEDAKQLLTRVGE--GTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDV-- 433 (466)
Q Consensus 360 ~~~el~~iL~~~~~~--~~~~i~~~~l~~l~~~a~--~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~-- 433 (466)
+.+++.+++..++.. .+..+++++++.+++.+. .|++|.++++++.+...+...+...|+.++++.+.......
T Consensus 202 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~ 281 (387)
T 2v1u_A 202 TAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRV 281 (387)
T ss_dssp CHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchH
Confidence 999999999999876 467899999999999883 29999999999999988877788899999999988754222
Q ss_pred HHHHHHHHHHHHHHH
Q 012326 434 QRSTQYLMEYQSQYI 448 (466)
Q Consensus 434 ~~~~~~~~~~~~~~~ 448 (466)
..+...+...++.|+
T Consensus 282 ~~~~~~l~~~~~~~l 296 (387)
T 2v1u_A 282 SEVVRTLPLHAKLVL 296 (387)
T ss_dssp HHHHHSSCHHHHHHH
T ss_pred HHHHHcCCHHHHHHH
Confidence 112334455566664
No 38
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.1e-20 Score=185.41 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=96.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhh---hcCCCe-EEEEeccceeEeecccccCCC-CCChhHHhhh--hhhccCCCCHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALE---NEMAPI-LVVATNRGITRIRGTNYKSAH-GIPMDLLDRL--LIISTKPYTRD 362 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le---~~~~~i-iil~tn~~~~~~~~~~~~~~~-~l~~~llsR~--~~i~~~pl~~~ 362 (466)
+.|++|||+|.+. .+..|+..++ .....+ +|.++|. ...|. .+++.++||| .+++|.||+.+
T Consensus 133 ~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~---------~d~~~~~L~~~v~SR~~~~~i~F~pYt~~ 201 (318)
T 3te6_A 133 KTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGH---------NVTIREQINIMPSLKAHFTEIKLNKVDKN 201 (318)
T ss_dssp EEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCS---------SCCCHHHHHTCHHHHTTEEEEECCCCCHH
T ss_pred ceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecC---------cccchhhcchhhhccCCceEEEeCCCCHH
Confidence 5799999999996 3444444443 333444 6667764 11121 2345578898 57999999999
Q ss_pred HHHHHHHHHHhhcC-----------------------------------CccCHHHHHHHHHhc--CCCCHHHHHHHHHH
Q 012326 363 EIRKILDIRCQEED-----------------------------------VEMAEDAKQLLTRVG--EGTSLRYAIHLITA 405 (466)
Q Consensus 363 el~~iL~~~~~~~~-----------------------------------~~i~~~~l~~l~~~a--~~g~~R~ai~lL~~ 405 (466)
|+.+||+.+++... +.+++++++++++.+ ..||+|.|+++|+.
T Consensus 202 el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~ 281 (318)
T 3te6_A 202 ELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEA 281 (318)
T ss_dssp HHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHH
Confidence 99999999998642 147999999999952 24999999999999
Q ss_pred HHHHHhh---------hcCCccCHHHHHHHHHHHHh
Q 012326 406 AALASQK---------RKGKVVEVQDIDRVYRLFLD 432 (466)
Q Consensus 406 a~~~a~~---------~~~~~It~~~v~~~~~~~~~ 432 (466)
|...|+. .|...||.+.+.++++.+.+
T Consensus 282 A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~~~ 317 (318)
T 3te6_A 282 AVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEAIN 317 (318)
T ss_dssp HHHHHHHHHHHHTTEETTEECCSEECCTHHHHHHHC
T ss_pred HHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHHhc
Confidence 9999864 23356888888888876654
No 39
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.82 E-value=6.9e-19 Score=183.68 Aligned_cols=231 Identities=24% Similarity=0.314 Sum_probs=167.1
Q ss_pred CcccccCCcCCcHHHHHHHHHHHHHHHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 34 EARDVSEGMVGQLPARKAAGVILQMIKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 34 ~p~~~~~~lvG~~~~k~~l~~~l~~l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
.|...|++|+|++++++.+..++..+.. +...++++||+||||||||++|+++|.+++ .||+.++++++.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--~~f~~is~~~~~~ 87 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--VPFFHISGSDFVE 87 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCeeeCCHHHHHH
Confidence 4455569999999999999998887653 334458999999999999999999999998 7999999999998
Q ss_pred ccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccC
Q 012326 107 LEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQ 185 (466)
Q Consensus 107 ~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
...+... .++.+|..+... .|++||+||+|++...+.....|
T Consensus 88 ~~~g~~~~~~r~lf~~A~~~---~p~ILfIDEid~l~~~r~~~~~g---------------------------------- 130 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQAKAH---APCIVFIDEIDAVGRHRGAGLGG---------------------------------- 130 (476)
T ss_dssp CCTTHHHHHHHHHHHHHHHT---CSEEEEEETGGGTCCC-----------------------------------------
T ss_pred HHhcccHHHHHHHHHHHHhc---CCCEEEEechhhhhhhcccccCc----------------------------------
Confidence 8888776 688888877653 48999999999986554211110
Q ss_pred CCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccch
Q 012326 186 SGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEI 265 (466)
Q Consensus 186 ~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei 265 (466)
+
T Consensus 131 --------------------------------------------------------------------------~----- 131 (476)
T 2ce7_A 131 --------------------------------------------------------------------------G----- 131 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------C-----
Confidence 0
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhh--cCCCe-EEEEeccceeEeecccccCCCC
Q 012326 266 RAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALEN--EMAPI-LVVATNRGITRIRGTNYKSAHG 342 (466)
Q Consensus 266 ~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~--~~~~i-iil~tn~~~~~~~~~~~~~~~~ 342 (466)
.... ...++.|+..++. ....+ +|.+||+ |..
T Consensus 132 ~~~~---------------------------------~~~l~~LL~~ld~~~~~~~viVIaaTn~------------~~~ 166 (476)
T 2ce7_A 132 HDER---------------------------------EQTLNQLLVEMDGFDSKEGIIVMAATNR------------PDI 166 (476)
T ss_dssp -CHH---------------------------------HHHHHHHHHHHHHSCGGGTEEEEEEESC------------GGG
T ss_pred cHHH---------------------------------HHHHHHHHHHHhccCCCCCEEEEEecCC------------hhh
Confidence 0000 0112222222221 12234 6777776 667
Q ss_pred CChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHH-HHHHHHhcCCCCH-HHHHHHHHHHHHHHhhhcCCc
Q 012326 343 IPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDA-KQLLTRVGEGTSL-RYAIHLITAAALASQKRKGKV 417 (466)
Q Consensus 343 l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~-l~~l~~~a~~g~~-R~ai~lL~~a~~~a~~~~~~~ 417 (466)
+++++++ || ..+.+.+|+.++..+|++..++... +++++ +..++..+. |.. |.+.+++..|...|...+...
T Consensus 167 Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~-G~sgadL~~lv~~Aal~A~~~~~~~ 243 (476)
T 2ce7_A 167 LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTP-GFVGADLENLVNEAALLAAREGRDK 243 (476)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCT-TCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHcCCCe
Confidence 7788876 77 4788999999999999998877554 33333 777888874 654 889999999988887777889
Q ss_pred cCHHHHHHHHHHH
Q 012326 418 VEVQDIDRVYRLF 430 (466)
Q Consensus 418 It~~~v~~~~~~~ 430 (466)
|+.+++..++...
T Consensus 244 I~~~dl~~al~~v 256 (476)
T 2ce7_A 244 ITMKDFEEAIDRV 256 (476)
T ss_dssp BCHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHH
Confidence 9999999988643
No 40
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.82 E-value=6.2e-19 Score=178.89 Aligned_cols=127 Identities=18% Similarity=0.273 Sum_probs=98.3
Q ss_pred eeeeeccccccHHH-HHH-HHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhh-hhhccCCCCHHHHHHH
Q 012326 292 VLFIDEVHMLDVEC-FSF-LNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIISTKPYTRDEIRKI 367 (466)
Q Consensus 292 vl~iDEi~~l~~~~-~~~-L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~~~pl~~~el~~i 367 (466)
+++|||+|.+.... ... +..++... .++ +|++||... ....+.+.+++|+ ..++|+||+.+++.++
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~---------~~~~l~~~l~sr~~~~i~l~~l~~~~~~~i 205 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN---------VRDYMEPRVLSSLGPSVIFKPYDAEQLKFI 205 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT---------TTTTSCHHHHHTCCCEEEECCCCHHHHHHH
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCc---------hHhhhCHHHHhcCCCeEEECCCCHHHHHHH
Confidence 99999999996532 334 44444333 344 667776500 0157788999996 7899999999999999
Q ss_pred HHHHHhh--cCCccCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 368 LDIRCQE--EDVEMAEDAKQLLTRVGE--GTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 368 L~~~~~~--~~~~i~~~~l~~l~~~a~--~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
+..++.. .+..+++++++.+++.+. .||+|.++++++.+...|. +...|+.++|+.++...
T Consensus 206 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 206 LSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 9998875 356899999999999872 2999999999999988875 66789999999988754
No 41
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.82 E-value=3.8e-18 Score=173.09 Aligned_cols=132 Identities=21% Similarity=0.254 Sum_probs=108.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC----CCe-EEEEeccceeEeecccccCCCCCChhHHhhhh--hhccCCCCHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM----API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLL--IISTKPYTRD 362 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~----~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~--~i~~~pl~~~ 362 (466)
+.|++|||+|.++...+..|.+.++... ..+ +|+++|... .+..+.+.+.+||. .+.|.||+.+
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~---------~~~~l~~~~~~r~~~~~i~~~pl~~~ 196 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA---------VLNNLDPSTRGIMGKYVIRFSPYTKD 196 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH---------HHHTSCHHHHHHHTTCEEECCCCBHH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch---------HHHHhCHHhhhcCCCceEEeCCCCHH
Confidence 5699999999999999999999987532 244 677777510 01457788999995 6999999999
Q ss_pred HHHHHHHHHHhhc--CCccCHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 363 EIRKILDIRCQEE--DVEMAEDAKQLLTRVGE--------GTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 363 el~~iL~~~~~~~--~~~i~~~~l~~l~~~a~--------~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
++.+++..++... ...+++++++.+++.+. .|++|.++++++.+...+...+...|+.+++..+....
T Consensus 197 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 197 QIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 9999999988752 34799999999999983 59999999999999988877788899999999887643
No 42
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.82 E-value=2.2e-19 Score=177.40 Aligned_cols=104 Identities=23% Similarity=0.326 Sum_probs=78.0
Q ss_pred cccccCCcCCcHHHHHHHHHHHHHH--------HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 35 ARDVSEGMVGQLPARKAAGVILQMI--------KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 35 p~~~~~~lvG~~~~k~~l~~~l~~l--------~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
|...|++|+|++.+++.+..++... ..+..+++++||+||||||||++|+++|++++ .+|+.++++.+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 87 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHHHh
Confidence 5555699999999999998887642 23566779999999999999999999999997 7899888877766
Q ss_pred ccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeec
Q 012326 107 LEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQI 143 (466)
Q Consensus 107 ~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~ 143 (466)
.+.+..+ .+..+|..+... .|+++|+||+|.+..
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~---~p~il~iDEid~l~~ 122 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQA---APCVLFFDELDSIAK 122 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHT---CSEEEEECSTTHHHH
T ss_pred hhcCchHHHHHHHHHHHHhc---CCeEEEEEChHHHhh
Confidence 5555544 555666555432 266666666666543
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.81 E-value=2.6e-19 Score=186.40 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=143.9
Q ss_pred CcccccCCcCCcHHHHHHHHHHHHH-H------HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 34 EARDVSEGMVGQLPARKAAGVILQM-I------KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 34 ~p~~~~~~lvG~~~~k~~l~~~l~~-l------~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
.|...|++|+|++.+++.+...+.. + ..+..+++++||+||||||||++|+++|+++. ..+|+.++++.+.+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-SSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-CCCEEEEeHHHHHh
Confidence 3445569999999999999877632 1 22334569999999999999999999999982 26899999988877
Q ss_pred ccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccC
Q 012326 107 LEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQ 185 (466)
Q Consensus 107 ~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
.+.+..+ .++.+|..+... .|++||+||+|.+.+.+.....+
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~---~~~vl~iDEid~l~~~~~~~~~~---------------------------------- 249 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLAREN---KPSIIFIDEIDSLCGSRSENESE---------------------------------- 249 (444)
T ss_dssp -----CCCTHHHHHHHHHHS---CSEEEEESCTTTTCCCSSCCCCG----------------------------------
T ss_pred hhcchHHHHHHHHHHHHHHc---CCeEEEEechHhhccCCCCcccc----------------------------------
Confidence 7666655 566666555432 36777777777765443211100
Q ss_pred CCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccch
Q 012326 186 SGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEI 265 (466)
Q Consensus 186 ~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei 265 (466)
.
T Consensus 250 -------------------------------------------------------------------------------~ 250 (444)
T 2zan_A 250 -------------------------------------------------------------------------------A 250 (444)
T ss_dssp -------------------------------------------------------------------------------G
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhh---cCCC-eEEEEeccceeEeecccccCCC
Q 012326 266 RAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALEN---EMAP-ILVVATNRGITRIRGTNYKSAH 341 (466)
Q Consensus 266 ~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~---~~~~-iiil~tn~~~~~~~~~~~~~~~ 341 (466)
....++.|+..++. .... +||.+||+ |.
T Consensus 251 ------------------------------------~~~~~~~lL~~l~~~~~~~~~v~vI~atn~------------~~ 282 (444)
T 2zan_A 251 ------------------------------------ARRIKTEFLVQMQGVGVDNDGILVLGATNI------------PW 282 (444)
T ss_dssp ------------------------------------GHHHHHHHHTTTTCSSCCCSSCEEEEEESC------------GG
T ss_pred ------------------------------------HHHHHHHHHHHHhCcccCCCCEEEEecCCC------------cc
Confidence 01112222333322 1223 46777776 77
Q ss_pred CCChhHHhhh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 012326 342 GIPMDLLDRL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 342 ~l~~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a 410 (466)
.+++++++|| ..+.+.+|+.++...|+..++...+..+++..++.|+..+.+-+.+.+..+++.|+..+
T Consensus 283 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a 352 (444)
T 2zan_A 283 VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQP 352 (444)
T ss_dssp GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHH
T ss_pred ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 8999999999 67889999999999999999988888889999999999985337788888888776544
No 44
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.81 E-value=9.1e-19 Score=174.86 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=110.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhc-----------CCCeEEEEeccceeEeecccccCCCCCChhHHhhhh-hhccC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENE-----------MAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLL-IISTK 357 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~-----------~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~-~i~~~ 357 (466)
.+|+||||+|.++...++.|++.+++. ..++++++|++.. .......++++|++||. .+.+.
T Consensus 110 ~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~------~~~~~~~l~~~l~~Rf~~~i~i~ 183 (331)
T 2r44_A 110 SNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV------EQEGTYPLPEAQVDRFMMKIHLT 183 (331)
T ss_dssp SSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT------CCSCCCCCCHHHHTTSSEEEECC
T ss_pred ccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC------cccCcccCCHHHHhheeEEEEcC
Confidence 369999999999999999999999864 2234444443200 00111248999999995 59999
Q ss_pred CCCHHHHHHHHHHHHhhc----------------------CCccCHHHHHHHHHhcC----CC---------------CH
Q 012326 358 PYTRDEIRKILDIRCQEE----------------------DVEMAEDAKQLLTRVGE----GT---------------SL 396 (466)
Q Consensus 358 pl~~~el~~iL~~~~~~~----------------------~~~i~~~~l~~l~~~a~----~g---------------~~ 396 (466)
+|+.++..+||+..+... ++.+++++++++++++. .+ ++
T Consensus 184 ~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~ 263 (331)
T 2r44_A 184 YLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGAST 263 (331)
T ss_dssp CCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCH
T ss_pred CCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcCh
Confidence 999999999999887652 67899999999987641 12 79
Q ss_pred HHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHH
Q 012326 397 RYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQR 435 (466)
Q Consensus 397 R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~ 435 (466)
|.++.+++.+..+|...++..|+.+||+.++...+..+.
T Consensus 264 R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 264 RAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRI 302 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhc
Confidence 999999999999998899999999999999988776553
No 45
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.80 E-value=5.2e-19 Score=174.05 Aligned_cols=131 Identities=13% Similarity=0.156 Sum_probs=95.4
Q ss_pred cceeeeeccccccHHH------------HHHHHHHhhhcC----------CCe-EEEEeccceeEeecccccCCCCCChh
Q 012326 290 PGVLFIDEVHMLDVEC------------FSFLNRALENEM----------API-LVVATNRGITRIRGTNYKSAHGIPMD 346 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~------------~~~L~~~le~~~----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~ 346 (466)
++|+||||+|.+.... ++.|++.++... ..+ +|.+++. ...++..++++
T Consensus 117 ~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~l~~~ 188 (310)
T 1ofh_A 117 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAF--------QVARPSDLIPE 188 (310)
T ss_dssp HCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECC--------SSSCGGGSCHH
T ss_pred CCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCc--------ccCCcccCCHH
Confidence 4699999999997644 788888888631 234 4444321 11235688899
Q ss_pred HHhhh-hhhccCCCCHHHHHHHHHH-----------HHhhcC--CccCHHHHHHHHHhcC-------CCCHHHHHHHHHH
Q 012326 347 LLDRL-LIISTKPYTRDEIRKILDI-----------RCQEED--VEMAEDAKQLLTRVGE-------GTSLRYAIHLITA 405 (466)
Q Consensus 347 llsR~-~~i~~~pl~~~el~~iL~~-----------~~~~~~--~~i~~~~l~~l~~~a~-------~g~~R~ai~lL~~ 405 (466)
|++|| ..+.|+||+.+++.+++.. .+...+ +.++++++++|++.+. .||+|.+.++++.
T Consensus 189 l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~ 268 (310)
T 1ofh_A 189 LQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMER 268 (310)
T ss_dssp HHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHH
T ss_pred HHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHH
Confidence 99999 5699999999999999983 222334 4799999999999872 4999999999998
Q ss_pred HHHHHh-----hhcCC-ccCHHHHHHHHH
Q 012326 406 AALASQ-----KRKGK-VVEVQDIDRVYR 428 (466)
Q Consensus 406 a~~~a~-----~~~~~-~It~~~v~~~~~ 428 (466)
+...+. ..+.. .||.++|+.++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~i~~~~v~~~l~ 297 (310)
T 1ofh_A 269 LMDKISFSASDMNGQTVNIDAAYVADALG 297 (310)
T ss_dssp HSHHHHHHGGGCTTCEEEECHHHHHHHTC
T ss_pred HHHhhhcCCccccCCEEEEeeHHHHHHHH
Confidence 763322 11222 499999998764
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.80 E-value=1.2e-18 Score=164.67 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=101.1
Q ss_pred cceeeeeccccccHHH--HHHHHHHhhhcC---CCeEEEEeccceeEeecccccCCCCCChhHHhhh---hhhccCCCCH
Q 012326 290 PGVLFIDEVHMLDVEC--FSFLNRALENEM---APILVVATNRGITRIRGTNYKSAHGIPMDLLDRL---LIISTKPYTR 361 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~--~~~L~~~le~~~---~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~---~~i~~~pl~~ 361 (466)
+++++|||+|.+.... +..|...++... .+.+|++++... .....+.+++.+|| ..+.|.|++.
T Consensus 105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~--------~~~~~~~~~l~~r~~~~~~i~l~~~~~ 176 (242)
T 3bos_A 105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP--------MEAGFVLPDLVSRMHWGLTYQLQPMMD 176 (242)
T ss_dssp SSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT--------TTTTCCCHHHHHHHHHSEEEECCCCCG
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH--------HHHHHhhhhhhhHhhcCceEEeCCCCH
Confidence 5699999999996644 666666655422 233666666400 00124458999999 7899999999
Q ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 362 DEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 362 ~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
++..+++...+...++.++++++++++..+ .||+|.+.++++.+...+... +..||.++|+.++.
T Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~l~~~l~~~~~~a~~~-~~~It~~~v~~~l~ 241 (242)
T 3bos_A 177 DEKLAALQRRAAMRGLQLPEDVGRFLLNRM-ARDLRTLFDVLDRLDKASMVH-QRKLTIPFVKEMLR 241 (242)
T ss_dssp GGHHHHHHHHHHHTTCCCCHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHhh
Confidence 999999999999889999999999999998 599999999999998877443 45799999998763
No 47
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.80 E-value=1.3e-18 Score=174.50 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=90.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.|+.+++++|++.+|+++..+ ||++|++ +..++++++|||..+.|.|++.+++.++|
T Consensus 109 ~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~------------~~~l~~ti~SRc~~~~~~~~~~~~~~~~L 176 (334)
T 1a5t_A 109 AKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE------------PERLLATLRSRCRLHYLAPPPEQYAVTWL 176 (334)
T ss_dssp CEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred cEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC------------hHhCcHHHhhcceeeeCCCCCHHHHHHHH
Confidence 6799999999999999999999999987655 8888876 77899999999999999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAA 407 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~ 407 (466)
..++ .+++++++.++..+ +|++|.|+++++...
T Consensus 177 ~~~~-----~~~~~~~~~l~~~s-~G~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 177 SREV-----TMSQDALLAALRLS-AGSPGAALALFQGDN 209 (334)
T ss_dssp HHHC-----CCCHHHHHHHHHHT-TTCHHHHHHTTSSHH
T ss_pred HHhc-----CCCHHHHHHHHHHc-CCCHHHHHHHhccch
Confidence 9865 68999999999999 599999999987653
No 48
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.77 E-value=3.9e-20 Score=179.15 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=66.2
Q ss_pred CCCCChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCC
Q 012326 340 AHGIPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGK 416 (466)
Q Consensus 340 ~~~l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~ 416 (466)
+..+++++++ |+ ..+.+.+|+.++..++|+..++...+. ++..++.++..+.+-+.|.+.++++.|...|...+..
T Consensus 161 ~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~ 239 (268)
T 2r62_A 161 PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQK 239 (268)
T ss_dssp CTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCC
T ss_pred chhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 6678888888 66 678899999999999999887654332 2222566666663235688889999998888766778
Q ss_pred ccCHHHHHHHHH
Q 012326 417 VVEVQDIDRVYR 428 (466)
Q Consensus 417 ~It~~~v~~~~~ 428 (466)
.|+.+++..++.
T Consensus 240 ~i~~~~~~~a~~ 251 (268)
T 2r62_A 240 EVRQQHLKEAVE 251 (268)
T ss_dssp SCCHHHHHTSCT
T ss_pred CcCHHHHHHHHH
Confidence 899999987754
No 49
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.77 E-value=1.7e-17 Score=172.39 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=105.1
Q ss_pred cceeeeeccccccH--HHHHHHHHHhhhcC--CCeEEEEeccceeEeecccccCCCCCChhHHhhh---hhhccCCCCHH
Q 012326 290 PGVLFIDEVHMLDV--ECFSFLNRALENEM--APILVVATNRGITRIRGTNYKSAHGIPMDLLDRL---LIISTKPYTRD 362 (466)
Q Consensus 290 ~~vl~iDEi~~l~~--~~~~~L~~~le~~~--~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~---~~i~~~pl~~~ 362 (466)
+.+|+|||+|.+.. ..+..|.+.++... ...+|++|++... ....+.+.+++|| .++.+.||+.+
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~--------~l~~l~~~L~sR~~~g~~i~l~~p~~e 266 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ--------KLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG--------GCSSCCHHHHHHHHSSBCCBCCCCCHH
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH--------HHHHHHHHHHhhccCCeEEEeCCCCHH
Confidence 57999999999975 66777777765422 2345666654100 0124789999999 68999999999
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHH
Q 012326 363 EIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFL 431 (466)
Q Consensus 363 el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~ 431 (466)
+...+|...+...++.++++++++|+..+ .||+|.+.++|+.+...|...+ ..||.+++++++....
T Consensus 267 ~r~~iL~~~~~~~~~~i~~e~l~~la~~~-~gn~R~l~~~L~~~~~~a~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 267 TRKSIARKMLEIEHGELPEEVLNFVAENV-DDNLRRLRGAIIKLLVYKETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHHHHHTCCCCTTHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHSS-SCCCHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 99999999999899999999999999998 5999999999999988886554 4699999998876443
No 50
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.77 E-value=1.3e-17 Score=168.49 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=103.2
Q ss_pred cceeeeecccccc----HHHHHHHHHHhhh-cCCCe-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhccCCCCH
Q 012326 290 PGVLFIDEVHMLD----VECFSFLNRALEN-EMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIISTKPYTR 361 (466)
Q Consensus 290 ~~vl~iDEi~~l~----~~~~~~L~~~le~-~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~~~pl~~ 361 (466)
+.+++|||+|.+. .+.+..|.+.++. ...++ +|++++... ....+.+.+.+|| ..+.|.||+.
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~---------~~~~~~~~~~~r~~~~~i~l~~l~~ 199 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK---------FVDLLDPRVKSSLSEEEIIFPPYNA 199 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG---------GGGGCTTHHHHTTTTEEEEECCCCH
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC---------hHhhhCHHHhccCCCeeEEeCCCCH
Confidence 5799999999986 4567777777654 23344 677776410 0135677899999 5799999999
Q ss_pred HHHHHHHHHHHhhc--CCccCHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 362 DEIRKILDIRCQEE--DVEMAEDAKQLLTRVGEG--TSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 362 ~el~~iL~~~~~~~--~~~i~~~~l~~l~~~a~~--g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
+++.+++..++... ...++++++++++..+.. |++|.++++++.+...+...+...|+.++++.++...
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 200 EELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 99999999988654 368999999999998822 9999999999999988877788899999999987654
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.76 E-value=7.1e-18 Score=169.04 Aligned_cols=135 Identities=20% Similarity=0.206 Sum_probs=105.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------------CCe-EEEEeccceeEeecccccCCCCCChhHHhhhh-hh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLL-II 354 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~-~i 354 (466)
.+++||||+|.++.+.++.|++.+++.. .++ +|.++|. ....++++|++||. .+
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~-----------~~~~l~~~L~~R~~~~~ 213 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNP-----------EEGDLRPQLLDRFGLSV 213 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECS-----------CSCCCCHHHHTTCSEEE
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCC-----------CCCCCCHHHHhhcceEE
Confidence 5799999999999999999999998631 234 4444442 12478999999995 48
Q ss_pred ccCCCC-HHHHHHHHHHH-----------------------------HhhcCCccCHHHHHHHHHhcCC--C-CHHHHHH
Q 012326 355 STKPYT-RDEIRKILDIR-----------------------------CQEEDVEMAEDAKQLLTRVGEG--T-SLRYAIH 401 (466)
Q Consensus 355 ~~~pl~-~~el~~iL~~~-----------------------------~~~~~~~i~~~~l~~l~~~a~~--g-~~R~ai~ 401 (466)
.+.+++ .++..+|+..+ ....++.++++++++|++.+.. + ++|.+++
T Consensus 214 ~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ 293 (350)
T 1g8p_A 214 EVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELT 293 (350)
T ss_dssp ECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHH
T ss_pred EcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHH
Confidence 899985 54444666542 2233578999999999998731 2 7899999
Q ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHhHHH
Q 012326 402 LITAAALASQKRKGKVVEVQDIDRVYRLFLDVQR 435 (466)
Q Consensus 402 lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~~~ 435 (466)
+++.+...|...++..|+.+||+.++.+.+..+.
T Consensus 294 ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 294 LLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp HHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 9999999998888889999999999998877664
No 52
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.76 E-value=1.4e-17 Score=174.90 Aligned_cols=226 Identities=23% Similarity=0.235 Sum_probs=159.0
Q ss_pred ccCCcCCcHHHHHHHHHHHHHHH--------cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccC
Q 012326 38 VSEGMVGQLPARKAAGVILQMIK--------EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM 109 (466)
Q Consensus 38 ~~~~lvG~~~~k~~l~~~l~~l~--------~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~ 109 (466)
.|++++|++.+++.+...+.... -|..+++++||+||||||||++|+++++.++ .||+.++|+.+.+...
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLA 279 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--SEEEEEEHHHHHTSCT
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--CCEEEEEchHhhhhhc
Confidence 34899999999999988776531 1355678999999999999999999999997 7899999999888877
Q ss_pred CHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCCC
Q 012326 110 SKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSGD 188 (466)
Q Consensus 110 ~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d 188 (466)
+..+ .+..+|..+... .|++||+||+|.+.+.+.....
T Consensus 280 g~~~~~~~~~f~~A~~~---~p~iLfLDEId~l~~~~~~~~~-------------------------------------- 318 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKN---APAIIFIDELDAIAPKREKTHG-------------------------------------- 318 (489)
T ss_dssp THHHHHHHHHHHHHHHT---CSEEEEEESHHHHCBCTTSCCC--------------------------------------
T ss_pred chhHHHHHHHHHHHHhc---CCcEEEecchhhhccccccccc--------------------------------------
Confidence 7776 677777766543 3777777777777554421110
Q ss_pred eEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchhHH
Q 012326 189 VIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAE 268 (466)
Q Consensus 189 ~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~~~ 268 (466)
T Consensus 319 -------------------------------------------------------------------------------- 318 (489)
T 3hu3_A 319 -------------------------------------------------------------------------------- 318 (489)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhc--CCCe-EEEEeccceeEeecccccCCCCCCh
Q 012326 269 VREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENE--MAPI-LVVATNRGITRIRGTNYKSAHGIPM 345 (466)
Q Consensus 269 ~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~--~~~i-iil~tn~~~~~~~~~~~~~~~~l~~ 345 (466)
.+....++.|++.++.. ...+ +|.+||+ +..+++
T Consensus 319 -------------------------------~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~------------~~~Ld~ 355 (489)
T 3hu3_A 319 -------------------------------EVERRIVSQLLTLMDGLKQRAHVIVMAATNR------------PNSIDP 355 (489)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHSCTTSCEEEEEEESC------------GGGBCG
T ss_pred -------------------------------hHHHHHHHHHHHHhhccccCCceEEEEecCC------------ccccCH
Confidence 00012234445555432 2234 6677776 667888
Q ss_pred hHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCC------
Q 012326 346 DLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGK------ 416 (466)
Q Consensus 346 ~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~------ 416 (466)
++++ || ..+.+.+|+.++..++|+.+++......+. .+..++..+.+-+.+.+-.+++.|+..+..+...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~-~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~ 434 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV-DLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC-CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTC
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh-hHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9988 56 468899999999999999988766544332 3577777775446777777888887777544332
Q ss_pred -----------ccCHHHHHHHHHHH
Q 012326 417 -----------VVEVQDIDRVYRLF 430 (466)
Q Consensus 417 -----------~It~~~v~~~~~~~ 430 (466)
.|+.+|++.++..+
T Consensus 435 ~~~~~~~~~~~~vt~edf~~Al~~~ 459 (489)
T 3hu3_A 435 ETIDAEVMNSLAVTMDDFRWALSQS 459 (489)
T ss_dssp SSCCHHHHHHCCBCHHHHHHHHTSH
T ss_pred cccchhhcccCcCCHHHHHHHHHhC
Confidence 36777777766533
No 53
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.75 E-value=4.3e-17 Score=162.27 Aligned_cols=129 Identities=15% Similarity=0.224 Sum_probs=99.3
Q ss_pred cceeeeeccccccH--HHHHHHHHHhhhcC--CCeEEEEeccceeEeecccccCC---CCCChhHHhhh---hhhccCCC
Q 012326 290 PGVLFIDEVHMLDV--ECFSFLNRALENEM--APILVVATNRGITRIRGTNYKSA---HGIPMDLLDRL---LIISTKPY 359 (466)
Q Consensus 290 ~~vl~iDEi~~l~~--~~~~~L~~~le~~~--~~iiil~tn~~~~~~~~~~~~~~---~~l~~~llsR~---~~i~~~pl 359 (466)
++++||||+|.+.. ..+..+...+.... ...+|++++. +| ..+.++|++|| ..+.+.|
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~-----------~~~~l~~l~~~L~sR~~~~~~i~l~~- 166 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR-----------HPQKLDGVSDRLVSRFEGGILVEIEL- 166 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS-----------CGGGCTTSCHHHHHHHHTSEEEECCC-
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC-----------ChHHHHHhhhHhhhcccCceEEEeCC-
Confidence 56999999999975 56666666654321 2235555553 12 26789999999 6789999
Q ss_pred CHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----hhcCCcc-CHHHHHHHHHHHHh
Q 012326 360 TRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQ----KRKGKVV-EVQDIDRVYRLFLD 432 (466)
Q Consensus 360 ~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~----~~~~~~I-t~~~v~~~~~~~~~ 432 (466)
+.++...++...+...++.++++++++|+..+ ||+|.+.++|+.+..... ..+...| |.++|.++...+.+
T Consensus 167 ~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~ 242 (324)
T 1l8q_A 167 DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYYA 242 (324)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998 999999999998876510 1233568 88999888765544
No 54
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.75 E-value=6.4e-17 Score=155.38 Aligned_cols=230 Identities=23% Similarity=0.297 Sum_probs=152.8
Q ss_pred CCcccccCCcCCcHHHHHHHHHHHHHHHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecccee
Q 012326 33 LEARDVSEGMVGQLPARKAAGVILQMIKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIF 105 (466)
Q Consensus 33 ~~p~~~~~~lvG~~~~k~~l~~~l~~l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~ 105 (466)
..|...|++++|++++++.+..+...+.. +...+++++|+||||||||+++++++..++ .+++.+++..+.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~ 86 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV 86 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHH
Confidence 44666679999999999999887765532 233357899999999999999999999987 678888887766
Q ss_pred cccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhccc
Q 012326 106 SLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKV 184 (466)
Q Consensus 106 ~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (466)
+...+... .+..+|..+... .|++++.||++.+...+.....+
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~---~~~i~~~Deid~l~~~~~~~~~~--------------------------------- 130 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRH---APCIVFIDEIDAVGRKRGSGVGG--------------------------------- 130 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTS---SSEEEEEETHHHHHC-----------------------------------------
T ss_pred HHHhhHHHHHHHHHHHHHHhc---CCeEEEehhhhhhhcccCccccc---------------------------------
Confidence 65555544 455666554322 36777777777653322100000
Q ss_pred CCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccc
Q 012326 185 QSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGE 264 (466)
Q Consensus 185 ~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~e 264 (466)
+
T Consensus 131 ---------------------------------------------------------------------------~---- 131 (254)
T 1ixz_A 131 ---------------------------------------------------------------------------G---- 131 (254)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------------------c----
Confidence 0
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhc--CCC-eEEEEeccceeEeecccccCCC
Q 012326 265 IRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENE--MAP-ILVVATNRGITRIRGTNYKSAH 341 (466)
Q Consensus 265 i~~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~--~~~-iiil~tn~~~~~~~~~~~~~~~ 341 (466)
.....+. ++.+...++.. ... +++.++|+ |.
T Consensus 132 -~~~~~~~---------------------------------~~~ll~~l~g~~~~~~~i~~a~t~~------------p~ 165 (254)
T 1ixz_A 132 -NDEREQT---------------------------------LNQLLVEMDGFEKDTAIVVMAATNR------------PD 165 (254)
T ss_dssp -CHHHHHH---------------------------------HHHHHHHHHTCCTTCCEEEEEEESC------------GG
T ss_pred -chHHHHH---------------------------------HHHHHHHHhCCCCCCCEEEEEccCC------------ch
Confidence 0000011 11122222211 112 35555555 77
Q ss_pred CCChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCc
Q 012326 342 GIPMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDA-KQLLTRVGEGTSLRYAIHLITAAALASQKRKGKV 417 (466)
Q Consensus 342 ~l~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~-l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~ 417 (466)
.+++++++ |+ ..+.+.+|+.++..+||+..++ +..+++++ +..++..+.+.+.|.+.++++.|...|...+...
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~ 243 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 243 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 78899988 45 5688999999999999987765 34455444 7788888853345889999999988887777788
Q ss_pred cCHHHHHHHH
Q 012326 418 VEVQDIDRVY 427 (466)
Q Consensus 418 It~~~v~~~~ 427 (466)
||.+|+++++
T Consensus 244 I~~~dl~~a~ 253 (254)
T 1ixz_A 244 ITMKDLEEAA 253 (254)
T ss_dssp BCHHHHHHHT
T ss_pred cCHHHHHHHh
Confidence 9999998874
No 55
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.74 E-value=2.3e-17 Score=173.20 Aligned_cols=230 Identities=21% Similarity=0.279 Sum_probs=162.3
Q ss_pred cccccCCcCCcHHHHHHHHHHHHHHHcC-------CCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecc
Q 012326 35 ARDVSEGMVGQLPARKAAGVILQMIKEG-------KIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107 (466)
Q Consensus 35 p~~~~~~lvG~~~~k~~l~~~l~~l~~~-------~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~ 107 (466)
|...|++|+|++++++.+..++..+... ...+++++|+||||||||++|+++|.+++ .||+.++++.+.+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHh
Confidence 5556699999999999999988876542 23357899999999999999999999997 78999999998887
Q ss_pred cCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCC
Q 012326 108 EMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQS 186 (466)
Q Consensus 108 e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
..+... .+..+|..+.. ..|+++|+||+|.+...+.....+
T Consensus 104 ~~g~~~~~v~~lfq~a~~---~~p~il~IDEId~l~~~r~~~~~~----------------------------------- 145 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGG----------------------------------- 145 (499)
T ss_dssp CTTHHHHHHHHHTTTSSS---SSSCEEEEECGGGTCCCSSSSTTT-----------------------------------
T ss_pred hhhhHHHHHHHHHHHHHh---cCCCEEEEehHHHHHHhhccCcCC-----------------------------------
Confidence 777665 56666665432 247888888888875433211000
Q ss_pred CCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchh
Q 012326 187 GDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIR 266 (466)
Q Consensus 187 ~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~ 266 (466)
+ .
T Consensus 146 -------------------------------------------------------------------------~-----~ 147 (499)
T 2dhr_A 146 -------------------------------------------------------------------------G-----N 147 (499)
T ss_dssp -------------------------------------------------------------------------S-----S
T ss_pred -------------------------------------------------------------------------C-----c
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhc--CC-CeEEEEeccceeEeecccccCCCCC
Q 012326 267 AEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENE--MA-PILVVATNRGITRIRGTNYKSAHGI 343 (466)
Q Consensus 267 ~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~--~~-~iiil~tn~~~~~~~~~~~~~~~~l 343 (466)
+.....++ .|+..++.. .. -+++.+||+ |..+
T Consensus 148 ~e~~~~l~---------------------------------~LL~~Ldg~~~~~~viviAatn~------------p~~L 182 (499)
T 2dhr_A 148 DEREQTLN---------------------------------QLLVEMDGFEKDTAIVVMAATNR------------PDIL 182 (499)
T ss_dssp HHHHHHHH---------------------------------HHHHHGGGCCSSCCCEEEECCSC------------GGGS
T ss_pred HHHHHHHH---------------------------------HHHHHhcccccCccEEEEEecCC------------hhhc
Confidence 01111111 122222211 12 235556665 6668
Q ss_pred ChhHHhh--h-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHH-HHHHHHhcCCCCH-HHHHHHHHHHHHHHhhhcCCcc
Q 012326 344 PMDLLDR--L-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDA-KQLLTRVGEGTSL-RYAIHLITAAALASQKRKGKVV 418 (466)
Q Consensus 344 ~~~llsR--~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~-l~~l~~~a~~g~~-R~ai~lL~~a~~~a~~~~~~~I 418 (466)
+++++++ + ..+.+.+|+.++..+||+..++ +..+++++ +..++..+. |.. |.+.+++..|+..|...+...|
T Consensus 183 D~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~-G~~gadL~~lv~~Aa~~A~~~~~~~I 259 (499)
T 2dhr_A 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTP-GFVGADLENLLNEAALLAAREGRRKI 259 (499)
T ss_dssp CTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSC-SCCHHHHHHHHHHHHHHHTTTCCSSC
T ss_pred CcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 8888884 4 5688999999999999987664 44555554 777888774 655 8999999999888877777899
Q ss_pred CHHHHHHHHHHH
Q 012326 419 EVQDIDRVYRLF 430 (466)
Q Consensus 419 t~~~v~~~~~~~ 430 (466)
+.+|+..++...
T Consensus 260 t~~dl~~al~~v 271 (499)
T 2dhr_A 260 TMKDLEEAADRV 271 (499)
T ss_dssp CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999988754
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.74 E-value=3.2e-17 Score=166.71 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=64.3
Q ss_pred CCChhHHhhh-hhhccCCCCHHHHHHHHHH----H-------Hh--hcCCccCHHHHHHHHHhcC--CCCHHHHHHHHHH
Q 012326 342 GIPMDLLDRL-LIISTKPYTRDEIRKILDI----R-------CQ--EEDVEMAEDAKQLLTRVGE--GTSLRYAIHLITA 405 (466)
Q Consensus 342 ~l~~~llsR~-~~i~~~pl~~~el~~iL~~----~-------~~--~~~~~i~~~~l~~l~~~a~--~g~~R~ai~lL~~ 405 (466)
.+.++|++|| .++.|.||+.+++..++.. . .. ..++.++++++++|++.+. .|++|.+.++++.
T Consensus 255 ~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~ 334 (376)
T 1um8_A 255 GLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIED 334 (376)
T ss_dssp TCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHH
T ss_pred CCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 4779999999 8899999999999999962 1 11 1246799999999999863 3999999999998
Q ss_pred HHHHHhhh------cCCccCHHHHHHH
Q 012326 406 AALASQKR------KGKVVEVQDIDRV 426 (466)
Q Consensus 406 a~~~a~~~------~~~~It~~~v~~~ 426 (466)
+...+..+ +.-.||.++|+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 335 FCLDIMFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHHHHHHTGGGGTTSEEEECHHHHTTS
T ss_pred HHHHHHhhccCCCCCEEEEeHHHhcCC
Confidence 87543221 1125888888654
No 57
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.74 E-value=2.7e-16 Score=153.27 Aligned_cols=227 Identities=22% Similarity=0.301 Sum_probs=151.7
Q ss_pred cccccCCcCCcHHHHHHHHHHHHHHHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecc
Q 012326 35 ARDVSEGMVGQLPARKAAGVILQMIKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107 (466)
Q Consensus 35 p~~~~~~lvG~~~~k~~l~~~l~~l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~ 107 (466)
|...|++++|++++++.+..+...+.. +...+++++|+||||||||+++++++..+. .+++.+++..+...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEM 112 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHH
Confidence 666679999999999999887765532 223347799999999999999999999987 67888888776665
Q ss_pred cCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCC
Q 012326 108 EMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQS 186 (466)
Q Consensus 108 e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
..+... .+..+|..+... .|++++.||++.+...+.....+
T Consensus 113 ~~~~~~~~i~~~~~~~~~~---~~~i~~iDeid~l~~~~~~~~~~----------------------------------- 154 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRH---APCIVFIDEIDAVGRKRGSGVGG----------------------------------- 154 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTS---CSEEEEEETHHHHHCC------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHHhc---CCcEEehhhhHhhhcccccccCC-----------------------------------
Confidence 555544 455666554432 36777777776653222100000
Q ss_pred CCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcchhhHHHHhhhcccccccccCCccchh
Q 012326 187 GDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIR 266 (466)
Q Consensus 187 ~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l~~ld~~~~~~~~~~~l~~~~~~ei~ 266 (466)
. .
T Consensus 155 -------------------------------------------------------------------------~-----~ 156 (278)
T 1iy2_A 155 -------------------------------------------------------------------------G-----N 156 (278)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------c-----c
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHhhcccccccceeeeeccccccHHHHHHHHHHhhhc--CC-CeEEEEeccceeEeecccccCCCCC
Q 012326 267 AEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDVECFSFLNRALENE--MA-PILVVATNRGITRIRGTNYKSAHGI 343 (466)
Q Consensus 267 ~~~r~~i~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~L~~~le~~--~~-~iiil~tn~~~~~~~~~~~~~~~~l 343 (466)
......++ .+...+... .. .+++.++|+ |..+
T Consensus 157 ~~~~~~~~---------------------------------~ll~~lsgg~~~~~~i~~a~t~~------------p~~l 191 (278)
T 1iy2_A 157 DEREQTLN---------------------------------QLLVEMDGFEKDTAIVVMAATNR------------PDIL 191 (278)
T ss_dssp HHHHHHHH---------------------------------HHHHHHTTCCTTCCEEEEEEESC------------TTSS
T ss_pred hHHHHHHH---------------------------------HHHHHHhCCCCCCCEEEEEecCC------------chhC
Confidence 00011111 111111111 11 235556665 7788
Q ss_pred ChhHHh--hh-hhhccCCCCHHHHHHHHHHHHhhcCCccCHHH-HHHHHHhcCCCCH-HHHHHHHHHHHHHHhhhcCCcc
Q 012326 344 PMDLLD--RL-LIISTKPYTRDEIRKILDIRCQEEDVEMAEDA-KQLLTRVGEGTSL-RYAIHLITAAALASQKRKGKVV 418 (466)
Q Consensus 344 ~~~lls--R~-~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~-l~~l~~~a~~g~~-R~ai~lL~~a~~~a~~~~~~~I 418 (466)
++++++ |+ ..+.+.+|+.++..+||+..++. ..+++++ +..++..+. |.. |.+.++++.|...|...+...|
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~-G~~~~dl~~l~~~a~~~a~~~~~~~I 268 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTP-GFVGADLENLLNEAALLAAREGRRKI 268 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCT-TCCHHHHHHHHHHHHHHHHHTTCCSB
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999998 45 56889999999999999987653 4555544 778888874 654 7888899999888877777889
Q ss_pred CHHHHHHHH
Q 012326 419 EVQDIDRVY 427 (466)
Q Consensus 419 t~~~v~~~~ 427 (466)
+.+|+++++
T Consensus 269 ~~~dl~~a~ 277 (278)
T 1iy2_A 269 TMKDLEEAA 277 (278)
T ss_dssp CHHHHHHHT
T ss_pred CHHHHHHHh
Confidence 999998874
No 58
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.72 E-value=3.2e-17 Score=174.59 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=92.8
Q ss_pred cceeeeeccccccHH----HHHHHHHHhhhcC---------------CC-eEEEEeccceeEeecccccCCCCCChhHHh
Q 012326 290 PGVLFIDEVHMLDVE----CFSFLNRALENEM---------------AP-ILVVATNRGITRIRGTNYKSAHGIPMDLLD 349 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~----~~~~L~~~le~~~---------------~~-iiil~tn~~~~~~~~~~~~~~~~l~~~lls 349 (466)
.+|+||||+|.+... .++.|++.++... .. +||.+||. +..++++|++
T Consensus 176 ~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~------------~~~l~~aL~~ 243 (543)
T 3m6a_A 176 NPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANN------------LATIPGPLRD 243 (543)
T ss_dssp SEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSS------------TTTSCHHHHH
T ss_pred CCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCc------------cccCCHHHHh
Confidence 459999999999876 4577888875421 22 36666665 7899999999
Q ss_pred hhhhhccCCCCHHHHHHHHHHHHhh----------cCCccCHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHhhh-----
Q 012326 350 RLLIISTKPYTRDEIRKILDIRCQE----------EDVEMAEDAKQLLTR-VGEGTSLRYAIHLITAAALASQKR----- 413 (466)
Q Consensus 350 R~~~i~~~pl~~~el~~iL~~~~~~----------~~~~i~~~~l~~l~~-~a~~g~~R~ai~lL~~a~~~a~~~----- 413 (466)
||.++.|.+|+.++...|+...+.. .++.++++++..++. ....|++|.+-+.++.++..+...
T Consensus 244 R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~ 323 (543)
T 3m6a_A 244 RMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEE 323 (543)
T ss_dssp HEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcC
Confidence 9998999999999999999876522 246789999999887 444589998888888776555322
Q ss_pred -cCCccCHHHHHHHHH
Q 012326 414 -KGKVVEVQDIDRVYR 428 (466)
Q Consensus 414 -~~~~It~~~v~~~~~ 428 (466)
+...||.++++.++.
T Consensus 324 ~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 324 RKRITVTEKNLQDFIG 339 (543)
T ss_dssp CSCCEECTTTTHHHHC
T ss_pred CcceecCHHHHHHHhC
Confidence 344688888877664
No 59
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.71 E-value=1.7e-17 Score=184.29 Aligned_cols=156 Identities=22% Similarity=0.321 Sum_probs=117.8
Q ss_pred cccCCcCCcHHHHHHHHHHHHH-HHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceeccc
Q 012326 37 DVSEGMVGQLPARKAAGVILQM-IKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE 108 (466)
Q Consensus 37 ~~~~~lvG~~~~k~~l~~~l~~-l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e 108 (466)
..|++|+|++.+++.+..++.. +.. +..++.++||+||||||||++|+++|..++ .+|+.+++.++.+.+
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKL 278 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--CEEEEEEHHHHSSSS
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CcEEEEEchHhhhhh
Confidence 4459999999999999888875 322 445678999999999999999999999987 789999999999888
Q ss_pred CCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCC
Q 012326 109 MSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSG 187 (466)
Q Consensus 109 ~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
.+..+ .+..+|..+... .|+++|+||++.+...+..... .....+...++..+. +....
T Consensus 279 ~g~~~~~l~~vf~~a~~~---~p~il~iDEid~l~~~~~~~~~---------------~~~~~~~~~Ll~ll~--g~~~~ 338 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKN---APAIIFIDELDAIAPKREKTHG---------------EVERRIVSQLLTLMD--GLKQR 338 (806)
T ss_dssp TTHHHHHHHHHHHHHHHH---CSEEEEEESGGGTSCTTSCCCS---------------HHHHHHHHHHHHHHH--SSCTT
T ss_pred hhhHHHHHHHHHHHHHhc---CCcEEEeccHHHhhhccccccc---------------hHHHHHHHHHHHHhh--hhccc
Confidence 88877 788888777653 4899999999999877643221 111122223333332 22333
Q ss_pred CeEEEEccCCCcccccccccccccccc
Q 012326 188 DVIAIDKVSGKITKLGRSFSRSRDYDA 214 (466)
Q Consensus 188 d~i~i~~~t~~~~~~~~~~~r~~~~d~ 214 (466)
..+.+..+||.++.+++++.++++|+.
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~ 365 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDR 365 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCE
T ss_pred ccEEEecccCCchhcCHHHhccccccc
Confidence 346677889999999999999888876
No 60
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.71 E-value=1.2e-16 Score=157.45 Aligned_cols=120 Identities=23% Similarity=0.371 Sum_probs=90.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC------------CCeEEEEeccceeEeecc-----cccC---------CCCC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM------------APILVVATNRGITRIRGT-----NYKS---------AHGI 343 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~------------~~iiil~tn~~~~~~~~~-----~~~~---------~~~l 343 (466)
++++||||++.++...++.|++.+++.. ..++|++||.+...+... ...+ ...+
T Consensus 120 ~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (311)
T 4fcw_A 120 YSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHF 199 (311)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHS
T ss_pred CeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhC
Confidence 4799999999999999999999998753 234777777521100000 0000 2257
Q ss_pred ChhHHhhh-hhhccCCCCHHHHHHHHHHHHhhc---------CCccCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHH
Q 012326 344 PMDLLDRL-LIISTKPYTRDEIRKILDIRCQEE---------DVEMAEDAKQLLTRVGE--GTSLRYAIHLITAAALA 409 (466)
Q Consensus 344 ~~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~---------~~~i~~~~l~~l~~~a~--~g~~R~ai~lL~~a~~~ 409 (466)
+++|++|| .++.|.||+.+++..++...++.. .+.++++++++|++.+. .|++|.+.++++.+...
T Consensus 200 ~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~ 277 (311)
T 4fcw_A 200 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 277 (311)
T ss_dssp CHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHH
T ss_pred CHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHH
Confidence 78999999 788899999999999998876653 45799999999999874 59999999999887543
No 61
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=5.6e-17 Score=160.41 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=80.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKIL 368 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~iL 368 (466)
++|++|||+|.|+.+++++|++.+|+|+..+ ||++|+. |..++++++|| +++|.|++.+++.++|
T Consensus 83 ~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~------------~~kl~~tI~SR--~~~f~~l~~~~i~~~L 148 (305)
T 2gno_A 83 RKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRR------------WHYLLPTIKSR--VFRVVVNVPKEFRDLV 148 (305)
T ss_dssp SEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESC------------GGGSCHHHHTT--SEEEECCCCHHHHHHH
T ss_pred ceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECC------------hHhChHHHHce--eEeCCCCCHHHHHHHH
Confidence 6799999999999999999999999987665 8888876 78999999999 9999999999999999
Q ss_pred HHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012326 369 DIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITA 405 (466)
Q Consensus 369 ~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~ 405 (466)
..++ .++++++ ..+ .||+|.|+++++.
T Consensus 149 ~~~~-----~i~~~~~----~~~-~g~~~~al~~l~~ 175 (305)
T 2gno_A 149 KEKI-----GDLWEEL----PLL-ERDFKTALEAYKL 175 (305)
T ss_dssp HHHH-----TTHHHHC----GGG-GTCHHHHHHHHHH
T ss_pred HHHh-----CCCHHHH----HHH-CCCHHHHHHHHHH
Confidence 9887 3677776 334 5999999999864
No 62
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.70 E-value=2.3e-16 Score=153.72 Aligned_cols=211 Identities=19% Similarity=0.295 Sum_probs=139.0
Q ss_pred CcccccCCcCCcHHHHHHHHHHHH-HHHc-------CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecccee
Q 012326 34 EARDVSEGMVGQLPARKAAGVILQ-MIKE-------GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIF 105 (466)
Q Consensus 34 ~p~~~~~~lvG~~~~k~~l~~~l~-~l~~-------~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~ 105 (466)
.|...|+||.|.+++++.+...+. .+.. +...+++++|+||||||||++++++|..++ .+++.+++..+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~--~~~i~i~g~~l~ 81 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG--LNFISVKGPELL 81 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT--CEEEEEETTTTC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC--CCEEEEEcHHHH
Confidence 356667999999999999986542 2221 445568899999999999999999999998 579999999998
Q ss_pred cccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhccc
Q 012326 106 SLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKV 184 (466)
Q Consensus 106 ~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (466)
+.+.++.+ .+..+|..+... .|++++.||+|.+...+.....+ ........++..+ .+.
T Consensus 82 ~~~~~~~~~~i~~vf~~a~~~---~p~i~~~Deid~~~~~r~~~~~~---------------~~~~~~~~~l~~L--sgg 141 (274)
T 2x8a_A 82 NMYVGESERAVRQVFQRAKNS---APCVIFFDEVDALCPRRSDRETG---------------ASVRVVNQLLTEM--DGL 141 (274)
T ss_dssp SSTTHHHHHHHHHHHHHHHHT---CSEEEEEETCTTTCC------------------------CTTHHHHHHHHH--HTC
T ss_pred hhhhhHHHHHHHHHHHHHHhc---CCCeEeeehhhhhhcccCCCcch---------------HHHHHHHHHHHhh--hcc
Confidence 88777766 688888776433 49999999999976544211110 0111223333333 223
Q ss_pred CCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcc-------h---hhHHHHhhhc--c
Q 012326 185 QSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVT-------L---HEIDVINSRT--Q 252 (466)
Q Consensus 185 ~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~-------l---~~ld~~~~~~--~ 252 (466)
.....+.+.+++|.++.+|+++.|++|||. ..+++.|+ ...|..++..+. + .+++.+...+ .
T Consensus 142 ~~~~~~i~ia~tn~p~~LD~al~r~gRfd~----~i~~~~P~--~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~ 215 (274)
T 2x8a_A 142 EARQQVFIMAATNRPDIIDPAILRPGRLDK----TLFVGLPP--PADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCD 215 (274)
T ss_dssp CSTTCEEEEEEESCGGGSCHHHHSTTSSCE----EEECCSCC--HHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGG
T ss_pred cccCCEEEEeecCChhhCCHhhcCcccCCe----EEEeCCcC--HHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccC
Confidence 345568889999999999999999999999 66777774 467777775433 1 1445555543 4
Q ss_pred cccccccCCccchhHHHHHHHHHHHH
Q 012326 253 GFLALFTGDTGEIRAEVREQIDTKVA 278 (466)
Q Consensus 253 ~~~~l~~~~~~ei~~~~r~~i~~~~~ 278 (466)
||++ .++..-++++....+.
T Consensus 216 g~sg------adl~~l~~~a~~~a~~ 235 (274)
T 2x8a_A 216 CYTG------ADLSALVREASICALR 235 (274)
T ss_dssp SCCH------HHHHHHHHHHHHHHHH
T ss_pred CcCH------HHHHHHHHHHHHHHHH
Confidence 7765 5555555555544443
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.69 E-value=2.5e-16 Score=174.35 Aligned_cols=118 Identities=17% Similarity=0.276 Sum_probs=85.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------C-CeEEEEeccceeEeecccccCCCCCChhHHhhh-hhhcc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------A-PILVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIIST 356 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~-~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~~ 356 (466)
++|+||||++.++++.++.|++.+++.. . .++|++||.+..........-...++++|++|| .++.|
T Consensus 580 ~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~ 659 (758)
T 3pxi_A 580 YSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVF 659 (758)
T ss_dssp SSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEEC
T ss_pred CeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEec
Confidence 5799999999999999999999998732 2 247888875110000000000012789999999 88999
Q ss_pred CCCCHHHHHHHHHHHHhhc---------CCccCHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Q 012326 357 KPYTRDEIRKILDIRCQEE---------DVEMAEDAKQLLTRVG--EGTSLRYAIHLITAAA 407 (466)
Q Consensus 357 ~pl~~~el~~iL~~~~~~~---------~~~i~~~~l~~l~~~a--~~g~~R~ai~lL~~a~ 407 (466)
.||+.+++..|+...+... .+.++++++++|++.+ ..|++|.+-+.++.+.
T Consensus 660 ~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 660 HSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHV 721 (758)
T ss_dssp C--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Confidence 9999999999998877653 4589999999998853 3488888888887653
No 64
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.69 E-value=1.9e-16 Score=160.33 Aligned_cols=84 Identities=18% Similarity=0.248 Sum_probs=59.7
Q ss_pred CChhHHhhh-hhhccCCCCHHHHHHHHHH----HH-------hh--cCCccCHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 012326 343 IPMDLLDRL-LIISTKPYTRDEIRKILDI----RC-------QE--EDVEMAEDAKQLLTRVG--EGTSLRYAIHLITAA 406 (466)
Q Consensus 343 l~~~llsR~-~~i~~~pl~~~el~~iL~~----~~-------~~--~~~~i~~~~l~~l~~~a--~~g~~R~ai~lL~~a 406 (466)
+.++|++|+ .++.|.||+.+++.+|+.. .. .. ..+.++++++++|++.+ ..+++|.+-++++.+
T Consensus 239 ~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~ 318 (363)
T 3hws_A 239 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAA 318 (363)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHH
Confidence 789999999 5556999999999998875 22 11 13578999999999743 458889999999887
Q ss_pred HHHHh--hhcC-C----ccCHHHHHHH
Q 012326 407 ALASQ--KRKG-K----VVEVQDIDRV 426 (466)
Q Consensus 407 ~~~a~--~~~~-~----~It~~~v~~~ 426 (466)
..-+. .... . .||.++|+..
T Consensus 319 ~~~~l~~~~~~~~~~~~~I~~~~v~~~ 345 (363)
T 3hws_A 319 LLDTMYDLPSMEDVEKVVIDESVIDGQ 345 (363)
T ss_dssp HHHHHHSTTTCCCSEEEECHHHHTTCC
T ss_pred HHHHHHhcccccCCceeEEcHHHHhCc
Confidence 64442 2222 1 4666666543
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.68 E-value=4.9e-16 Score=150.10 Aligned_cols=126 Identities=22% Similarity=0.284 Sum_probs=90.1
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CC-eEEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------AP-ILVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~-iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.+++||||+|.++.+.+..|++.+++.. .. .+|++||...... .....+.++|.+|+ ..++
T Consensus 101 ~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~-----~~~~~~~~~L~~Rl~~~~i~ 175 (265)
T 2bjv_A 101 GGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM-----VNEGTFRADLLDALAFDVVQ 175 (265)
T ss_dssp TSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHH-----HHHTSSCHHHHHHHCSEEEE
T ss_pred CcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHH-----HHcCCccHHHHHhhcCcEEe
Confidence 4699999999999999999999998631 22 3777777511000 00135678999999 4578
Q ss_pred cCCCCH--HHHHHHHHHH----HhhcCC----ccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHH
Q 012326 356 TKPYTR--DEIRKILDIR----CQEEDV----EMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDI 423 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~----~~~~~~----~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v 423 (466)
++|+.. +++..++... +...+. .+++++++.+....-.||+|.+.++++.+...+. +..|+.+|+
T Consensus 176 lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 176 LPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 888876 6666655443 333443 6899999999988756999999999999876652 446665554
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=4.8e-16 Score=172.10 Aligned_cols=119 Identities=22% Similarity=0.309 Sum_probs=88.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------C-CeEEEEeccceeEeecc----cccCC---------CCCC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------A-PILVVATNRGITRIRGT----NYKSA---------HGIP 344 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~-~iiil~tn~~~~~~~~~----~~~~~---------~~l~ 344 (466)
++|+||||++.++++.++.|++.+++.. . .++|++||.+...+... ..... ..++
T Consensus 558 ~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 637 (758)
T 1r6b_X 558 HAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT 637 (758)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSC
T ss_pred CcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcC
Confidence 6799999999999999999999999742 2 23788888643222100 00000 1578
Q ss_pred hhHHhhh-hhhccCCCCHHHHHHHHHHHHhhc---------CCccCHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Q 012326 345 MDLLDRL-LIISTKPYTRDEIRKILDIRCQEE---------DVEMAEDAKQLLTRVGE--GTSLRYAIHLITAAAL 408 (466)
Q Consensus 345 ~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~---------~~~i~~~~l~~l~~~a~--~g~~R~ai~lL~~a~~ 408 (466)
++|++|| .++.|.||+.+++..|+...+... .+.++++++++|++.+. ++++|.+.++++.+..
T Consensus 638 ~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 638 PEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 8999999 789999999999999999887633 35799999999998763 3558998888887653
No 67
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.68 E-value=3.6e-16 Score=151.71 Aligned_cols=101 Identities=11% Similarity=0.210 Sum_probs=70.9
Q ss_pred cceeeeeccccc----------cHHHHHHHHHHhhh---cCCCe-EEEEeccceeEeecccccCCCCCCh-hHHhhh-hh
Q 012326 290 PGVLFIDEVHML----------DVECFSFLNRALEN---EMAPI-LVVATNRGITRIRGTNYKSAHGIPM-DLLDRL-LI 353 (466)
Q Consensus 290 ~~vl~iDEi~~l----------~~~~~~~L~~~le~---~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~-~llsR~-~~ 353 (466)
++++||||+|.+ ....+..|...++. ...++ +|.+||. +..+++ .+++|+ ..
T Consensus 125 ~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~------------~~~l~~~~l~~rf~~~ 192 (272)
T 1d2n_A 125 LSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR------------KDVLQEMEMLNAFSTT 192 (272)
T ss_dssp EEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC------------HHHHHHTTCTTTSSEE
T ss_pred CcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCC------------hhhcchhhhhcccceE
Confidence 568889998887 44556666666654 22344 5555654 323333 467785 77
Q ss_pred hccCCCCH-HHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHH
Q 012326 354 ISTKPYTR-DEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGT-----SLRYAIHLITAAAL 408 (466)
Q Consensus 354 i~~~pl~~-~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g-----~~R~ai~lL~~a~~ 408 (466)
+.++|++. +++..++... ..++++++..+++.+. | ++|.++++++.+..
T Consensus 193 i~~p~l~~r~~i~~i~~~~-----~~~~~~~~~~l~~~~~-g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 193 IHVPNIATGEQLLEALELL-----GNFKDKERTTIAQQVK-GKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp EECCCEEEHHHHHHHHHHH-----TCSCHHHHHHHHHHHT-TSEEEECHHHHHHHHHHHTT
T ss_pred EcCCCccHHHHHHHHHHhc-----CCCCHHHHHHHHHHhc-CCCccccHHHHHHHHHHHhh
Confidence 88999887 7777777652 3578999999999883 6 89999999998753
No 68
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.67 E-value=4.4e-16 Score=163.58 Aligned_cols=125 Identities=17% Similarity=0.169 Sum_probs=97.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCeEEEEeccceeEeecccccC-CCCCChhHHhhh-hhhcc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------APILVVATNRGITRIRGTNYKS-AHGIPMDLLDRL-LIIST 356 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~iiil~tn~~~~~~~~~~~~~-~~~l~~~llsR~-~~i~~ 356 (466)
++|+||||+++++++.++.|+.++++.. .+++|++||. .+ ....++++++|| ..+.+
T Consensus 110 ~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~----------lpe~~~~~~aLldRF~~~i~v 179 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNE----------LPEADSSLEALYDRMLIRLWL 179 (500)
T ss_dssp CSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESS----------CCCTTCTTHHHHTTCCEEEEC
T ss_pred ceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhcccc----------CCCccccHHHHHHHHHHHHHH
Confidence 4699999999999999999999997521 2345777763 10 123557999998 55778
Q ss_pred CCCCH-HHHHHHHHHHHh-----------------------hcCCccCHHHHHHHHHhc---------CCCCHHHHHHHH
Q 012326 357 KPYTR-DEIRKILDIRCQ-----------------------EEDVEMAEDAKQLLTRVG---------EGTSLRYAIHLI 403 (466)
Q Consensus 357 ~pl~~-~el~~iL~~~~~-----------------------~~~~~i~~~~l~~l~~~a---------~~g~~R~ai~lL 403 (466)
++++. ++...|+..... ..++.++++++++++++. ...+.|.++.++
T Consensus 180 ~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~ll 259 (500)
T 3nbx_X 180 DKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAI 259 (500)
T ss_dssp CSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHH
T ss_pred HHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHH
Confidence 88887 566777765432 126789999999998876 235899999999
Q ss_pred HHHHHHHhhhcCCccCHHHHH
Q 012326 404 TAAALASQKRKGKVVEVQDID 424 (466)
Q Consensus 404 ~~a~~~a~~~~~~~It~~~v~ 424 (466)
..+.+.|...|+..|+++||.
T Consensus 260 r~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 260 RLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHhhcCCccccchHHH
Confidence 999999999999999999998
No 69
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.67 E-value=7e-16 Score=161.48 Aligned_cols=109 Identities=22% Similarity=0.191 Sum_probs=77.2
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCC----CCCChhHHhhhhhhccCCCCHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSA----HGIPMDLLDRLLIISTKPYTRDEIR 365 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~----~~l~~~llsR~~~i~~~pl~~~el~ 365 (466)
++|+||| ...+.++.|.+.++.. .-.+|.+||. ++ ..++++|++||.++.|.+|+.++..
T Consensus 268 ~~iLfiD----~~~~a~~~L~~~L~~g-~v~vI~at~~-----------~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~ 331 (468)
T 3pxg_A 268 NIILFID----AAIDASNILKPSLARG-ELQCIGATTL-----------DEYRKYIEKDAALERRFQPIQVDQPSVDESI 331 (468)
T ss_dssp CCEEEEC----C--------CCCTTSS-SCEEEEECCT-----------TTTHHHHTTCSHHHHSEEEEECCCCCHHHHH
T ss_pred CeEEEEe----CchhHHHHHHHhhcCC-CEEEEecCCH-----------HHHHHHhhcCHHHHHhCccceeCCCCHHHHH
Confidence 5799999 4446677777777653 2235566654 12 2578999999999999999999999
Q ss_pred HHHHHHHhh----cCCccCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHhhhc
Q 012326 366 KILDIRCQE----EDVEMAEDAKQLLTRVGE-----GTSLRYAIHLITAAALASQKRK 414 (466)
Q Consensus 366 ~iL~~~~~~----~~~~i~~~~l~~l~~~a~-----~g~~R~ai~lL~~a~~~a~~~~ 414 (466)
.||...+.. .++.++++++.+++..+. ..-+++++.+++.++..+....
T Consensus 332 ~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~ 389 (468)
T 3pxg_A 332 QILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRS 389 (468)
T ss_dssp HHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhcc
Confidence 999988776 578999999999998862 1336789999999886665443
No 70
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.66 E-value=4.3e-15 Score=151.82 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=95.4
Q ss_pred cceeeeeccccccH------HHHHHHHHHhhhcC-----CCe-EEEEeccceeEeecccccCCCCCC---hhHHhhh-hh
Q 012326 290 PGVLFIDEVHMLDV------ECFSFLNRALENEM-----API-LVVATNRGITRIRGTNYKSAHGIP---MDLLDRL-LI 353 (466)
Q Consensus 290 ~~vl~iDEi~~l~~------~~~~~L~~~le~~~-----~~i-iil~tn~~~~~~~~~~~~~~~~l~---~~llsR~-~~ 353 (466)
+.+++|||+|.+.. +.+..|.+.+.... .++ +|++++.... ...+. +.+.+|+ ..
T Consensus 139 ~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~---------~~~l~~~~~~~~~~~~~~ 209 (412)
T 1w5s_A 139 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRA---------LSYMREKIPQVESQIGFK 209 (412)
T ss_dssp EEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHH---------HHHHHHHCHHHHTTCSEE
T ss_pred eEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccH---------HHHHhhhcchhhhhcCCe
Confidence 56999999999853 66777777776532 455 5556653000 00122 3444554 33
Q ss_pred hccCCCCHHHHHHHHHHHHhhcC--CccCHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHhhhcCCccCHHHHHH
Q 012326 354 ISTKPYTRDEIRKILDIRCQEED--VEMAEDAKQLLTRVGEG------TSLRYAIHLITAAALASQKRKGKVVEVQDIDR 425 (466)
Q Consensus 354 i~~~pl~~~el~~iL~~~~~~~~--~~i~~~~l~~l~~~a~~------g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~ 425 (466)
+.|.||+.+++.+++..++...+ ..+++++++.+++.+ . |++|.++++++.+...+...+...++.+++..
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~ 288 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY-GEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRK 288 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH-CGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH-HHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 89999999999999998876543 368999999999998 6 99999999999988777777778899999987
Q ss_pred HHHH
Q 012326 426 VYRL 429 (466)
Q Consensus 426 ~~~~ 429 (466)
+...
T Consensus 289 ~~~~ 292 (412)
T 1w5s_A 289 AVSE 292 (412)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 71
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.65 E-value=2.6e-15 Score=148.51 Aligned_cols=158 Identities=20% Similarity=0.227 Sum_probs=104.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCCCCCChhHHhhh--hhhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL--LIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~--~~i~ 355 (466)
.+++||||++.++.+.+..|++.+++.. ..+ +|++||.... .......+.++|.+|+ ..++
T Consensus 97 ~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~-----~~v~~g~fr~~L~~Rl~~~~i~ 171 (304)
T 1ojl_A 97 GGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA-----EEVSAGRFRQDLYYRLNVVAIE 171 (304)
T ss_dssp TSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHH-----HHHHHTSSCHHHHHHHSSEEEE
T ss_pred CCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHH-----HHHHhCCcHHHHHhhcCeeEEe
Confidence 4699999999999999999999998743 223 7777775210 0001235678899998 4466
Q ss_pred cCCCC--HHHHHHHHHHHHhh----cC---CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHH
Q 012326 356 TKPYT--RDEIRKILDIRCQE----ED---VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRV 426 (466)
Q Consensus 356 ~~pl~--~~el~~iL~~~~~~----~~---~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~ 426 (466)
++|+. .+++..++...++. .+ ..+++++++.+...+-.||+|.+.++++.+...+. ...|+.+++...
T Consensus 172 lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~---~~~i~~~~l~~~ 248 (304)
T 1ojl_A 172 MPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLT---GEYISERELPLA 248 (304)
T ss_dssp CCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCC---SSSBCGGGSCGG
T ss_pred ccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCC---CCcccHHhhhhh
Confidence 88888 56776666654432 22 57999999999998756999999999999876653 456777766432
Q ss_pred HHHH-HhHHHH-HH-HHHHHHHHHHhhhhhcc
Q 012326 427 YRLF-LDVQRS-TQ-YLMEYQSQYINEVTIEA 455 (466)
Q Consensus 427 ~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~ 455 (466)
+..- ...... .. .+.+.+++|+...-...
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~e~~~i~~~l~~~ 280 (304)
T 1ojl_A 249 IAATPIKTEYSGEIQPLVDVEKEVILAALEKT 280 (304)
T ss_dssp GC-------CCSSCCCHHHHHHHHHHHHHHTT
T ss_pred hccCCCccCCCcchhhHHHHHHHHHHHHHHHc
Confidence 1100 000000 01 35677888875554433
No 72
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.63 E-value=7.6e-15 Score=158.36 Aligned_cols=130 Identities=25% Similarity=0.310 Sum_probs=99.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC---------------------CCe-EEEEeccceeEeecccccCCCCCChhH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM---------------------API-LVVATNRGITRIRGTNYKSAHGIPMDL 347 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~---------------------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~l 347 (466)
++++||||++.+++..++.|++++++.. ..+ +|++||+. ....++++|
T Consensus 202 ~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~----------~~~~l~~~l 271 (604)
T 3k1j_A 202 KGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD----------TVDKMHPAL 271 (604)
T ss_dssp TSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH----------HHHHSCHHH
T ss_pred CCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH----------HHhhcCHHH
Confidence 5799999999999999999999998421 112 77777751 014688999
Q ss_pred Hhhhh----hhccC---CCCHHHHHHHHHHHHhhc-----CCccCHHHHHHHHHhcC--CC-------CHHHHHHHHHHH
Q 012326 348 LDRLL----IISTK---PYTRDEIRKILDIRCQEE-----DVEMAEDAKQLLTRVGE--GT-------SLRYAIHLITAA 406 (466)
Q Consensus 348 lsR~~----~i~~~---pl~~~el~~iL~~~~~~~-----~~~i~~~~l~~l~~~a~--~g-------~~R~ai~lL~~a 406 (466)
++||. .+.|. +.+.+.+..++...++.. ...++++++..|++.+. .| ++|.+.++++.|
T Consensus 272 ~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A 351 (604)
T 3k1j_A 272 RSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAA 351 (604)
T ss_dssp HHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHH
T ss_pred HHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHH
Confidence 99994 34443 346666777776655433 25899999999998652 24 699999999999
Q ss_pred HHHHhhhcCCccCHHHHHHHHHH
Q 012326 407 ALASQKRKGKVVEVQDIDRVYRL 429 (466)
Q Consensus 407 ~~~a~~~~~~~It~~~v~~~~~~ 429 (466)
...|...++..|+.+||.+++..
T Consensus 352 ~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 352 GDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHhcCcccccHHHHHHHHHh
Confidence 99998889999999999999853
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.60 E-value=4.2e-15 Score=166.52 Aligned_cols=119 Identities=23% Similarity=0.349 Sum_probs=90.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC------------CCeEEEEeccceeEeec-----------cccc---CCCCC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM------------APILVVATNRGITRIRG-----------TNYK---SAHGI 343 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~------------~~iiil~tn~~~~~~~~-----------~~~~---~~~~l 343 (466)
++|+||||++.++++.++.|++.+++.. ..++|++||.+...+.. .... ....+
T Consensus 661 ~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f 740 (854)
T 1qvr_A 661 YSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHF 740 (854)
T ss_dssp SEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred CeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhC
Confidence 5799999999999999999999998752 23478888863211100 0000 02357
Q ss_pred ChhHHhhh-hhhccCCCCHHHHHHHHHHHHhhc---------CCccCHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Q 012326 344 PMDLLDRL-LIISTKPYTRDEIRKILDIRCQEE---------DVEMAEDAKQLLTRVGE--GTSLRYAIHLITAAAL 408 (466)
Q Consensus 344 ~~~llsR~-~~i~~~pl~~~el~~iL~~~~~~~---------~~~i~~~~l~~l~~~a~--~g~~R~ai~lL~~a~~ 408 (466)
.++|++|| .++.|.||+.+++..|+...++.. .+.++++++++|++.+. .|++|.+.++++.+..
T Consensus 741 ~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 741 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp CHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred CHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 78999999 788899999999999998776632 35799999999999875 5999999999988653
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.58 E-value=2.1e-14 Score=158.87 Aligned_cols=133 Identities=20% Similarity=0.248 Sum_probs=95.1
Q ss_pred cceeeeeccccc---------cHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCC
Q 012326 290 PGVLFIDEVHML---------DVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYT 360 (466)
Q Consensus 290 ~~vl~iDEi~~l---------~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~ 360 (466)
++++||||+|.+ ..+..+.|...++... ..+|.+|+... ......++++|.+||..+.|.+|+
T Consensus 279 ~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~-~~~I~at~~~~-------~~~~~~~d~aL~~Rf~~i~v~~p~ 350 (758)
T 1r6b_X 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGK-IRVIGSTTYQE-------FSNIFEKDRALARRFQKIDITEPS 350 (758)
T ss_dssp CEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCC-CEEEEEECHHH-------HHCCCCCTTSSGGGEEEEECCCCC
T ss_pred CeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCC-eEEEEEeCchH-------HhhhhhcCHHHHhCceEEEcCCCC
Confidence 579999999998 2344555555555432 23555555311 011234567899999999999999
Q ss_pred HHHHHHHHHHHHhh----cCCccCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHhh----hcCCccCHHHHHHHH
Q 012326 361 RDEIRKILDIRCQE----EDVEMAEDAKQLLTRVGE-----GTSLRYAIHLITAAALASQK----RKGKVVEVQDIDRVY 427 (466)
Q Consensus 361 ~~el~~iL~~~~~~----~~~~i~~~~l~~l~~~a~-----~g~~R~ai~lL~~a~~~a~~----~~~~~It~~~v~~~~ 427 (466)
.++..++|...+.. .++.++++++..++..+. ...+..++.+++.++..+.. .+...|+.+++..++
T Consensus 351 ~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 351 IEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHH
Confidence 99999999987765 468899999999998762 13456889999888766654 345779999999987
Q ss_pred HHH
Q 012326 428 RLF 430 (466)
Q Consensus 428 ~~~ 430 (466)
..+
T Consensus 431 ~~~ 433 (758)
T 1r6b_X 431 ARI 433 (758)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 75
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.58 E-value=5.3e-14 Score=138.31 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=60.9
Q ss_pred CCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHH-HHHHHHHHHHcc-cccCceEEEEccee
Q 012326 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTE-ALMQAFRKAIGV-RIKEEAEVIEGEVV 139 (466)
Q Consensus 62 ~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~-~l~~~~~~a~~~-~~~~~~ii~~dEid 139 (466)
+..+++++||+||||||||++|+++|+.++ .||+.++++.+.+.+.+..+ .+.++|..+... +...|++||+||+|
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~--~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHT--CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 344568999999999999999999999998 78999999999988888877 678888777422 23368999999999
Q ss_pred eeecc
Q 012326 140 EVQID 144 (466)
Q Consensus 140 ~~~~~ 144 (466)
++.+.
T Consensus 110 ~~~~~ 114 (293)
T 3t15_A 110 AGAGR 114 (293)
T ss_dssp -----
T ss_pred hhcCC
Confidence 97653
No 76
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.56 E-value=2.8e-14 Score=157.86 Aligned_cols=108 Identities=22% Similarity=0.186 Sum_probs=76.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCC----CCCChhHHhhhhhhccCCCCHHHHH
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSA----HGIPMDLLDRLLIISTKPYTRDEIR 365 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~----~~l~~~llsR~~~i~~~pl~~~el~ 365 (466)
++|+||| ...+.++.|...++... -.+|.+||. ++ ..++++|++||..+.|.+|+.++..
T Consensus 268 ~~iLfiD----~~~~~~~~L~~~l~~~~-v~~I~at~~-----------~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~ 331 (758)
T 3pxi_A 268 NIILFID----AAIDASNILKPSLARGE-LQCIGATTL-----------DEYRKYIEKDAALERRFQPIQVDQPSVDESI 331 (758)
T ss_dssp CCEEEEC----C--------CCCTTSSS-CEEEEECCT-----------TTTHHHHTTCSHHHHSEEEEECCCCCHHHHH
T ss_pred CEEEEEc----CchhHHHHHHHHHhcCC-EEEEeCCCh-----------HHHHHHhhccHHHHhhCcEEEeCCCCHHHHH
Confidence 5799999 33456677777776432 235556654 12 1578999999999999999999999
Q ss_pred HHHHHHHhh----cCCccCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHhhh
Q 012326 366 KILDIRCQE----EDVEMAEDAKQLLTRVGE-----GTSLRYAIHLITAAALASQKR 413 (466)
Q Consensus 366 ~iL~~~~~~----~~~~i~~~~l~~l~~~a~-----~g~~R~ai~lL~~a~~~a~~~ 413 (466)
.||...+.. .++.++++++..++..+. ...++.++.+++.++..+...
T Consensus 332 ~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 332 QILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 999987765 467899999999998762 234578999999988766544
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=8.6e-15 Score=157.35 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=101.2
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-------------CCe-EEEEeccceeEeecc-cccCCCCCChhHHhhh-hh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-------------API-LVVATNRGITRIRGT-NYKSAHGIPMDLLDRL-LI 353 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-------------~~i-iil~tn~~~~~~~~~-~~~~~~~l~~~llsR~-~~ 353 (466)
.+|+||||+|.++++.++.|++++++.. ..+ +|.+||...-.+.+. +......++++|++|| .+
T Consensus 392 ~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~ 471 (595)
T 3f9v_A 392 GGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLI 471 (595)
T ss_dssp SSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCC
T ss_pred CCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEE
Confidence 5799999999999999999999998632 122 566666411000000 0000017899999999 56
Q ss_pred hccCCCCHHHHHHHHHHHHhhc-------------------------CCccCHHHHHHHHHh--------------cCCC
Q 012326 354 ISTKPYTRDEIRKILDIRCQEE-------------------------DVEMAEDAKQLLTRV--------------GEGT 394 (466)
Q Consensus 354 i~~~pl~~~el~~iL~~~~~~~-------------------------~~~i~~~~l~~l~~~--------------a~~g 394 (466)
+.+.+++..+...++.+..... ...+++++.+.|.+. ...+
T Consensus 472 ~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~ 551 (595)
T 3f9v_A 472 FILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILI 551 (595)
T ss_dssp EEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCS
T ss_pred EEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccc
Confidence 6666666655444444433321 226788888888887 2358
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHhH
Q 012326 395 SLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDV 433 (466)
Q Consensus 395 ~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~~ 433 (466)
++|.+..+++.|.++|..+++..|+.+||..|+.++...
T Consensus 552 s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 552 TPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp STTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887543
No 78
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.54 E-value=1.6e-14 Score=144.83 Aligned_cols=129 Identities=11% Similarity=0.076 Sum_probs=108.5
Q ss_pred cceeeeecccc-ccHHHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCHHHHHHH
Q 012326 290 PGVLFIDEVHM-LDVECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKI 367 (466)
Q Consensus 290 ~~vl~iDEi~~-l~~~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~~el~~i 367 (466)
+.|++|||+|. ++.+.+++|.+.+++++..+ +|++++... .......+++++.+||.++.|.|++.+++..+
T Consensus 77 ~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~------~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLS------KAQENAAWFTALANRSVQVTCQTPEQAQLPRW 150 (343)
T ss_dssp CEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCC------TTTTTSHHHHHHTTTCEEEEECCCCTTHHHHH
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCC------hhhHhhHHHHHHHhCceEEEeeCCCHHHHHHH
Confidence 56999999999 99999999999999987655 666765300 00001457889999999999999999999999
Q ss_pred HHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 368 LDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 368 L~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
+..+++.+++.+++++++++++.+ +||+|.+.+.|+.+..++ +.+.||.++|+....
T Consensus 151 l~~~~~~~g~~i~~~a~~~l~~~~-~gdl~~~~~elekl~l~~---~~~~It~e~V~~~~~ 207 (343)
T 1jr3_D 151 VAARAKQLNLELDDAANQVLCYCY-EGNLLALAQALERLSLLW---PDGKLTLPRVEQAVN 207 (343)
T ss_dssp HHHHHHHTTCEECHHHHHHHHHSS-TTCHHHHHHHHHHHHHHC---TTCEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHh-chHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHh
Confidence 999999999999999999999998 599999999999987664 345899999988765
No 79
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.53 E-value=1.2e-14 Score=131.36 Aligned_cols=59 Identities=22% Similarity=0.403 Sum_probs=46.6
Q ss_pred CCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 27 LGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 27 ~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+|.++++|..+ ++++|+++..+.+.. .+..+. +++++|+||||||||++|+++++.+.
T Consensus 10 ~~l~~~~~~~~~-~~~~g~~~~~~~l~~---~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 10 IDLTERAEQGKL-DPVIGRDEEIRRTIQ---VLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEHHHHHHTTCS-CCCCSCHHHHHHHHH---HHTSSS--SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc-cccccchHHHHHHHH---HHhcCC--CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345667778777 899999998877644 344432 47899999999999999999999874
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.53 E-value=3.5e-14 Score=159.05 Aligned_cols=114 Identities=24% Similarity=0.163 Sum_probs=75.9
Q ss_pred cceeeeecccccc--------HHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhhhhhccCCCCH
Q 012326 290 PGVLFIDEVHMLD--------VECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTR 361 (466)
Q Consensus 290 ~~vl~iDEi~~l~--------~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~~~i~~~pl~~ 361 (466)
+.|+||||+|.+. .+..+.|...++.... .+|.+||.... .. ..++++|++||..+.+.+|+.
T Consensus 264 ~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i-~~I~at~~~~~-------~~-~~~d~aL~rRf~~i~l~~p~~ 334 (854)
T 1qvr_A 264 EVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGEL-RLIGATTLDEY-------RE-IEKDPALERRFQPVYVDEPTV 334 (854)
T ss_dssp SEEEEECCC-------------------HHHHHTTCC-CEEEEECHHHH-------HH-HTTCTTTCSCCCCEEECCCCH
T ss_pred CeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCe-EEEEecCchHH-------hh-hccCHHHHhCCceEEeCCCCH
Confidence 5699999999986 3455667777765433 25555553100 00 245788999998899999999
Q ss_pred HHHHHHHHHHHhhc----CCccCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHhh
Q 012326 362 DEIRKILDIRCQEE----DVEMAEDAKQLLTRVGE-----GTSLRYAIHLITAAALASQK 412 (466)
Q Consensus 362 ~el~~iL~~~~~~~----~~~i~~~~l~~l~~~a~-----~g~~R~ai~lL~~a~~~a~~ 412 (466)
++...||...+... ++.++++++..++..+. ..-++.++.+++.++..+..
T Consensus 335 ~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~ 394 (854)
T 1qvr_A 335 EETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRM 394 (854)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHh
Confidence 99999998776643 78999999999999862 13378999999988766653
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.50 E-value=3.2e-15 Score=166.03 Aligned_cols=180 Identities=18% Similarity=0.269 Sum_probs=128.5
Q ss_pred CcccccCCcCCcHHHHHHHHHHHHHH--------HcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecccee
Q 012326 34 EARDVSEGMVGQLPARKAAGVILQMI--------KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIF 105 (466)
Q Consensus 34 ~p~~~~~~lvG~~~~k~~l~~~l~~l--------~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~ 105 (466)
.|...|+++.|++++++.+..++..- ..+..+++++||+||||||||++|+++|..++ .+|+.++++++.
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 45556799999999999987665421 12445678999999999999999999999998 689999999999
Q ss_pred cccCCHHH-HHHHHHHHHHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhccc
Q 012326 106 SLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKV 184 (466)
Q Consensus 106 ~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (466)
+.+.+..+ .+..+|..+.... |+++|+||+|++...+...... .......+...++..+ +++
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~---p~vl~iDEid~l~~~r~~~~~~------------~~~~~~~v~~~LL~~l--d~~ 611 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAA---PCVLFFDELDSIAKARGGNIGD------------GGGAADRVINQILTEM--DGM 611 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHC---SBCCCCSSHHHHCCTTTTCCSH------------HHHHHHHHHHHHHTTC--C--
T ss_pred hhhcCccHHHHHHHHHHHHhcC---CeEEEEEChhhhhhhccCCCCC------------cchhHHHHHHHHHHHH--hcc
Confidence 99988877 7888888776644 8999999999998776433210 0001111122222222 122
Q ss_pred CCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhh
Q 012326 185 QSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHC 238 (466)
Q Consensus 185 ~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~ 238 (466)
...+-+.|..+||+++.+++++.|++||+. ..+++.|+. ..|..++..
T Consensus 612 ~~~~~v~vI~tTN~~~~ld~allrpgRf~~----~i~~~~p~~--~~r~~Il~~ 659 (806)
T 1ypw_A 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQ----LIYIPLPDE--KSRVAILKA 659 (806)
T ss_dssp ----CCBCCCCCBSCGGGSCTTSSGGGTTS----CCCCCCCCC--SHHHHHTTT
T ss_pred cccCCeEEEEecCCcccCCHHHhCccccCc----eeecCCCCH--HHHHHHHHH
Confidence 333457788999999999999999999997 557777754 345566543
No 82
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.42 E-value=1.9e-13 Score=123.32 Aligned_cols=59 Identities=25% Similarity=0.390 Sum_probs=46.8
Q ss_pred CCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 27 LGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 27 ~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+|.++++|..+ ++++|++.+.+.+. ..+..+ ..++++|+||||||||++|+++++.+.
T Consensus 10 ~~l~~~~~~~~~-~~~~g~~~~~~~l~---~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 10 RDLTALARAGKL-DPVIGRDTEIRRAI---QILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp EEHHHHHHTTCS-CCCCSCHHHHHHHH---HHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc-chhhcchHHHHHHH---HHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356667888877 89999999877764 334433 247899999999999999999999874
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.40 E-value=1.9e-12 Score=113.63 Aligned_cols=58 Identities=21% Similarity=0.162 Sum_probs=42.4
Q ss_pred CcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCC-CCceEeeecc
Q 012326 41 GMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGL-ETPFAMISGS 102 (466)
Q Consensus 41 ~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~-~~p~~~i~~~ 102 (466)
+++|++.+.+.+...+..+. ..+.++||+||||||||++|+++++.... ..||+ ++|+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a---~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS---ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT---TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CceeCCHHHHHHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 67999999888766555443 23478999999999999999999987632 35666 6553
No 84
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.33 E-value=4e-11 Score=123.23 Aligned_cols=143 Identities=19% Similarity=0.106 Sum_probs=100.7
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhc---------CCCe-EEEEeccceeEeecccccCCCCCChhHHhhh-hhhc-cC
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENE---------MAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIIS-TK 357 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~---------~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~-~~ 357 (466)
.+++|+||++.++++.+.+|+++||+. +.++ +|.++|.-. ............||+++++|| ..+. +.
T Consensus 301 gGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~-~yd~~~s~~~~~Lp~alLDRFDLi~i~~d 379 (506)
T 3f8t_A 301 GGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE-QWPSDPPIARIDLDQDFLSHFDLIAFLGV 379 (506)
T ss_dssp TSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC---CCSCGGGGCCSCHHHHTTCSEEEETTC
T ss_pred CCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc-ccCCCCCccccCCChHHhhheeeEEEecC
Confidence 479999999999999999999999974 2344 444444311 110000001148899999999 3332 22
Q ss_pred -------------CCCHHHHHHHHHHHHh--hcCCccCHHHHHHHHHhc-----------------CCCCHHHHHHHHHH
Q 012326 358 -------------PYTRDEIRKILDIRCQ--EEDVEMAEDAKQLLTRVG-----------------EGTSLRYAIHLITA 405 (466)
Q Consensus 358 -------------pl~~~el~~iL~~~~~--~~~~~i~~~~l~~l~~~a-----------------~~g~~R~ai~lL~~ 405 (466)
.++.+++++.+.. ++ .....+++++.++|+++. ..-++|....+++.
T Consensus 380 ~pd~e~d~e~~~~~ls~e~L~~yi~~-ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRl 458 (506)
T 3f8t_A 380 DPRPGEPEEQDTEVPSYTLLRRYLLY-AIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERL 458 (506)
T ss_dssp --------------CCHHHHHHHHHH-HHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHH
T ss_pred CCChhHhhcccCCCCCHHHHHHHHHH-HHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHH
Confidence 2445556666654 44 336789999998888652 12578999999999
Q ss_pred HHHHHhhhcCCccCHHHHHHHHHHHHhHH
Q 012326 406 AALASQKRKGKVVEVQDIDRVYRLFLDVQ 434 (466)
Q Consensus 406 a~~~a~~~~~~~It~~~v~~~~~~~~~~~ 434 (466)
|.++|..+++..|+++||+.++.++....
T Consensus 459 A~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl 487 (506)
T 3f8t_A 459 AKAHARMRLSDDVEPEDVDIAAELVDWYL 487 (506)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999885543
No 85
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.33 E-value=2.1e-12 Score=113.11 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=41.9
Q ss_pred CcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecc
Q 012326 41 GMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGS 102 (466)
Q Consensus 41 ~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~ 102 (466)
+++|++.+.+.+...+..+.. .+.++||+||||||||++|+++++... ||+.++|.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~---~~~~vll~G~~GtGKt~lA~~i~~~~~---~~~~~~~~ 60 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK---RTSPVFLTGEAGSPFETVARYFHKNGT---PWVSPARV 60 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT---CSSCEEEEEETTCCHHHHHGGGCCTTS---CEECCSST
T ss_pred CceeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCC---CeEEechh
Confidence 689999998888776665542 236899999999999999999998764 67766653
No 86
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.27 E-value=8.7e-11 Score=119.02 Aligned_cols=116 Identities=26% Similarity=0.309 Sum_probs=86.0
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCCCCCChhHHhhhh--hhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLL--IIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~--~i~ 355 (466)
.|+|||||++.|+...+..|++.+++.. ..+ +|.+||.... .......+.++|..|+. .++
T Consensus 223 ~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~-----~~v~~g~fr~dL~~rl~~~~i~ 297 (368)
T 3dzd_A 223 QGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLE-----EEIKKGNFREDLYYRLSVFQIY 297 (368)
T ss_dssp TSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHH-----HHHHTTSSCHHHHHHHTSEEEE
T ss_pred CCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHH-----HHHHcCCccHHHHHHhCCeEEe
Confidence 5799999999999999999999998642 112 6667765211 11113567789999995 466
Q ss_pred cCCCCH--HHHHHHHHHHHhhc----C---CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 012326 356 TKPYTR--DEIRKILDIRCQEE----D---VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~~~~~----~---~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a 410 (466)
++|+.+ +++..++...+++. + ..+++++++.|....-.||+|.+.++++.+...+
T Consensus 298 lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 298 LPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred CCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 889877 67766655554432 3 4699999999999875699999999999987655
No 87
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=99.26 E-value=4.3e-12 Score=100.72 Aligned_cols=94 Identities=68% Similarity=0.974 Sum_probs=88.1
Q ss_pred HHcccccCceEEEEcceeeeeccCCCCCCCCceeeEEEeeeccchhHhhhhhHHHHHhhhcccCCCCeEEEEccCCCccc
Q 012326 122 AIGVRIKEEAEVIEGEVVEVQIDRPATSGAAAKTGKLTLKTTEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSGKITK 201 (466)
Q Consensus 122 a~~~~~~~~~ii~~dEid~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~i~~~t~~~~~ 201 (466)
++|+++++...+|.||+.++.+.++.++.| ...+.++|+|.++...+++++++++++++++|..||+|+|+++||.+.+
T Consensus 2 sIGvRIkE~keVyEGEV~ei~~~~~~~~~~-~~~~~itLkT~d~ek~l~lg~~i~e~L~kekV~~GDVI~Id~~sG~V~k 80 (95)
T 2cqa_A 2 SSGSSGKEETEIIEGEVVEIQIDRPATGTG-SKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISK 80 (95)
T ss_dssp CCCCSCCCCCSEEEEEEEEEEEECTTSSSS-SCEEEEEEECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEETTTTEEEE
T ss_pred CcEEEEEEEEEEEEEEEEEEEEeecCCCCc-ceEEEEEEEecCCcEEEeCCHHHHHHHHHcCceeCCEEEEEccCCEEEE
Confidence 468899999999999999999999887766 7889999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccC
Q 012326 202 LGRSFSRSRDYDAMG 216 (466)
Q Consensus 202 ~~~~~~r~~~~d~~~ 216 (466)
++++..+..+||.+|
T Consensus 81 lGRs~~~a~~yDl~g 95 (95)
T 2cqa_A 81 LGRSFTRARSGPSSG 95 (95)
T ss_dssp EECCCCCCCCCSCCC
T ss_pred EEEeeccccccccCC
Confidence 999999999999843
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.25 E-value=2.3e-10 Score=116.73 Aligned_cols=127 Identities=25% Similarity=0.314 Sum_probs=92.3
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcC-----------CCe-EEEEeccceeEeecccccCCCCCChhHHhhhh--hhc
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEM-----------API-LVVATNRGITRIRGTNYKSAHGIPMDLLDRLL--IIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~-----------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~~--~i~ 355 (466)
.|++||||++.|+.+.+..|++.+++.. ..+ +|.+||..... ......+.++|..|+. .++
T Consensus 232 ~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~-----~~~~g~fr~dl~~rl~~~~i~ 306 (387)
T 1ny5_A 232 GGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKE-----LVKEGKFREDLYYRLGVIEIE 306 (387)
T ss_dssp TSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHH-----HHHTTSSCHHHHHHHTTEEEE
T ss_pred CcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHH-----HHHcCCccHHHHHhhcCCeec
Confidence 5799999999999999999999998632 123 77777752111 1113566788888984 466
Q ss_pred cCCCCH--HHHHHHHHHHHhh----cC---CccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHH
Q 012326 356 TKPYTR--DEIRKILDIRCQE----ED---VEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDID 424 (466)
Q Consensus 356 ~~pl~~--~el~~iL~~~~~~----~~---~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~ 424 (466)
++|+.+ +++..++...+++ .+ ..+++++++.+....-.||+|.+.++++.++..+ .+..|+.+++-
T Consensus 307 lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~ 381 (387)
T 1ny5_A 307 IPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELS 381 (387)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHH
T ss_pred CCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCc
Confidence 778764 6666655554432 23 3589999999999886799999999999997766 34688888764
No 89
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.05 E-value=1.4e-08 Score=100.69 Aligned_cols=109 Identities=12% Similarity=0.189 Sum_probs=69.1
Q ss_pred cceeeeeccccccH-------HHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhh-hhhccCCCC
Q 012326 290 PGVLFIDEVHMLDV-------ECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIISTKPYT 360 (466)
Q Consensus 290 ~~vl~iDEi~~l~~-------~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~~~pl~ 360 (466)
+.+++|||+|.+.. +....|....+.. .++ +|+++..... +. ..........++..|. ..+++.|++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g~~~~~-l~--~~l~~~~~~~~l~~~~~~~i~l~pl~ 204 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKIILTGSEVGL-LH--DFLKITDYESPLYGRIAGEVLVKPFD 204 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEESSHHH-HH--HHHCTTCTTSTTTTCCCEEEECCCCC
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEEEECCcHHH-HH--HHHhhcCCCCccccCccceeeCCCCC
Confidence 45999999999864 4555565555543 344 4454432000 00 0000001112233444 478899999
Q ss_pred HHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHH
Q 012326 361 RDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLI 403 (466)
Q Consensus 361 ~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL 403 (466)
.++..+++...+...+..++++.+..++..+ +|++..+..+.
T Consensus 205 ~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t-gG~P~~l~~~~ 246 (350)
T 2qen_A 205 KDTSVEFLKRGFREVNLDVPENEIEEAVELL-DGIPGWLVVFG 246 (350)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CCCHHHHHHHH
Confidence 9999999998887778889999999999998 48886544443
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.90 E-value=3.4e-08 Score=97.92 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=65.0
Q ss_pred cceeeeeccccccH----HHHHHHHHHhhhcCCCe-EEEEeccceeEeecccccCCCCCChhHHhhh-hhhccCCCCHHH
Q 012326 290 PGVLFIDEVHMLDV----ECFSFLNRALENEMAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIISTKPYTRDE 363 (466)
Q Consensus 290 ~~vl~iDEi~~l~~----~~~~~L~~~le~~~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~~~pl~~~e 363 (466)
+.+++|||+|.++. +....|....+.. .++ +|+++..... + ...........++..|. ..+.+.|++.++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g~~~~~-l--~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e 213 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSGSEMGL-L--YDYLRVEDPESPLFGRAFSTVELKPFSREE 213 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEESSHHH-H--HHHTTTTCTTSTTTTCCCEEEEECCCCHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEcCchHH-H--HHHHhccCCCCccccCccceeecCCCCHHH
Confidence 56999999999864 3445555554442 244 5555542100 0 00000001112344454 578899999999
Q ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012326 364 IRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITA 405 (466)
Q Consensus 364 l~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~ 405 (466)
..+++...+...+...++. ..++..+ +|++..+..+...
T Consensus 214 ~~~~l~~~~~~~~~~~~~~--~~i~~~t-~G~P~~l~~~~~~ 252 (357)
T 2fna_A 214 AIEFLRRGFQEADIDFKDY--EVVYEKI-GGIPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHHHTCCCCCH--HHHHHHH-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcH--HHHHHHh-CCCHHHHHHHHHH
Confidence 9999998776666666543 7788888 4888765554443
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.82 E-value=1.5e-07 Score=84.88 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=41.8
Q ss_pred CCCCcccccCCcCC-cHHHHHHHHHHHHHHHcCC-CCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 31 SSLEARDVSEGMVG-QLPARKAAGVILQMIKEGK-IAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 31 ~~~~p~~~~~~lvG-~~~~k~~l~~~l~~l~~~~-~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+++++..+ +++++ .+..++++..+...+..-. .++.+++|+||||||||+++++++..+
T Consensus 2 ~r~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 2 KRYWNANL-DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CSCTTCCS-SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred chhhhCcc-ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46777777 77776 3344444444444444322 336899999999999999999999877
No 92
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.81 E-value=2.1e-08 Score=96.32 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=29.8
Q ss_pred HHHHHHHcCCCC-CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 54 VILQMIKEGKIA-GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 54 ~~l~~l~~~~~~-~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+..+..+ ..+++|+||||||||++|.++|+.+.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 334555666633 46799999999999999999999764
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.59 E-value=2e-07 Score=81.92 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHc
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
++..++|+||+|+|||+++++++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999877
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.51 E-value=8.3e-08 Score=88.04 Aligned_cols=109 Identities=12% Similarity=0.115 Sum_probs=62.9
Q ss_pred CCCCCCCCCcccccCCcCCcH-HHHHHHHHHHHHHHcCCC--CCceEEEecCCCCChHHHHHHHHHHcCC-CCceEeeec
Q 012326 26 GLGLDSSLEARDVSEGMVGQL-PARKAAGVILQMIKEGKI--AGRAVLIAGQPGTGKTAIAMGMAKSLGL-ETPFAMISG 101 (466)
Q Consensus 26 ~~~~~~~~~p~~~~~~lvG~~-~~k~~l~~~l~~l~~~~~--~~~~iLL~GppGtGKT~lA~~ia~~l~~-~~p~~~i~~ 101 (466)
..++...+++..+ +++++.+ ...+++..+...+..... ++++++|+||||||||++|++++..+.. ..++..+.+
T Consensus 12 ~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 12 SMFMPREILRASL-SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp EESSCGGGGCCCT-TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred HcCCCHHHHcCCH-hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 3455666666666 8888765 333344444444443322 1279999999999999999999998743 245655665
Q ss_pred cceeccc---CCHHHHHHHHHHHHHcccccCceEEEEcceeee
Q 012326 102 SEIFSLE---MSKTEALMQAFRKAIGVRIKEEAEVIEGEVVEV 141 (466)
Q Consensus 102 ~~~~~~e---~~~~~~l~~~~~~a~~~~~~~~~ii~~dEid~~ 141 (466)
..+.... .... .+..++... ..+.+|++||++..
T Consensus 91 ~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~lilDei~~~ 127 (202)
T 2w58_A 91 PELFRELKHSLQDQ-TMNEKLDYI-----KKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHC---C-CCHHHHHHH-----HHSSEEEEEEECCC
T ss_pred HHHHHHHHHHhccc-hHHHHHHHh-----cCCCEEEEcCCCCC
Confidence 4432210 0000 011112111 13679999999764
No 95
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.48 E-value=3.2e-07 Score=84.50 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=26.6
Q ss_pred HcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 60 KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 60 ~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..+.+...+++|+||||||||++|.++|+.+.
T Consensus 52 ~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 52 LKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33554446799999999999999999999885
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.44 E-value=2.7e-07 Score=112.63 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=52.8
Q ss_pred cceeeeeccccccH------HHHHHHHHHhhhcC------------CCe-EEEEeccceeEeecccccCC-----CCCCh
Q 012326 290 PGVLFIDEVHMLDV------ECFSFLNRALENEM------------API-LVVATNRGITRIRGTNYKSA-----HGIPM 345 (466)
Q Consensus 290 ~~vl~iDEi~~l~~------~~~~~L~~~le~~~------------~~i-iil~tn~~~~~~~~~~~~~~-----~~l~~ 345 (466)
+.|+||||+|.... .....|.+.++... ..+ +|.++|. | ..+++
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Np------------p~~gGR~~l~~ 1404 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNP------------PTDPGRIPMSE 1404 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECC------------TTSTTCCCCCH
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCC------------CccCCCccCCh
Confidence 56999999987633 35666777776421 123 4444443 3 47899
Q ss_pred hHHhhhhhhccCCCCHHHHHHHHHHHHh
Q 012326 346 DLLDRLLIISTKPYTRDEIRKILDIRCQ 373 (466)
Q Consensus 346 ~llsR~~~i~~~pl~~~el~~iL~~~~~ 373 (466)
.|++||.++.+.+++.+++..|+..+..
T Consensus 1405 rllRrf~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1405 RFTRHAAILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp HHHTTEEEEECCCCTTTHHHHHHHHHHH
T ss_pred hhhheeeEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988765
No 97
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.23 E-value=2.1e-05 Score=96.35 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=67.7
Q ss_pred ceeeeeccccccHHHHHHHH-------HHhhhcC-------------CCe-EEEEeccceeEeecccccCCCCCChhHHh
Q 012326 291 GVLFIDEVHMLDVECFSFLN-------RALENEM-------------API-LVVATNRGITRIRGTNYKSAHGIPMDLLD 349 (466)
Q Consensus 291 ~vl~iDEi~~l~~~~~~~L~-------~~le~~~-------------~~i-iil~tn~~~~~~~~~~~~~~~~l~~~lls 349 (466)
..+++||+++++++.++.+. .++.+.. .++ ++++.|- .+.....+|+.|++
T Consensus 699 aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP--------gy~g~~eLP~~Lk~ 770 (2695)
T 4akg_A 699 AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP--------GYNGRSELPENLKK 770 (2695)
T ss_dssp CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC--------CSSSSCCCCHHHHT
T ss_pred CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC--------CccCcccccHHHHh
Confidence 48889999999988877773 3332211 122 3344442 11224689999999
Q ss_pred hhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHh-------c-----CCCCHHHHHHHHHHHHHHH
Q 012326 350 RLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRV-------G-----EGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 350 R~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~-------a-----~~g~~R~ai~lL~~a~~~a 410 (466)
||..+.+..++.+.+.+|+-... |....+.....++.. . ..-++|....+|..|..+-
T Consensus 771 ~Fr~v~m~~Pd~~~i~ei~l~s~---Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 771 SFREFSMKSPQSGTIAEMILQIM---GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHH---HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred heEEEEeeCCCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 99999999999998888865422 333333333333221 1 1247888888888776544
No 98
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.06 E-value=1.9e-05 Score=78.53 Aligned_cols=66 Identities=30% Similarity=0.398 Sum_probs=51.9
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
++.+..|..++..++|.|+||+|||+||..+|..+.. .-....+++.|++..+...+++....++.
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-----~g~~Vl~fSlEms~~ql~~Rlls~~~~v~ 101 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-----DDRGVAVFSLEMSAEQLALRALSDLTSIN 101 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-----TTCEEEEEESSSCHHHHHHHHHHHHHCCC
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Confidence 4455678999999999999999999999999876531 11234578899999999999988776653
No 99
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.95 E-value=1e-05 Score=95.13 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=65.4
Q ss_pred cccCCcCCcHHHHHHHHHHHH-HHH-----------------------------------cCCCCCceEEEecCCCCChH
Q 012326 37 DVSEGMVGQLPARKAAGVILQ-MIK-----------------------------------EGKIAGRAVLIAGQPGTGKT 80 (466)
Q Consensus 37 ~~~~~lvG~~~~k~~l~~~l~-~l~-----------------------------------~~~~~~~~iLL~GppGtGKT 80 (466)
..|.++-|.+++|+.+...+. .+. .|.+.++.+|+|||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 556999999999886544432 231 12334566999999999999
Q ss_pred HHHHHHHHHcCC-CCc--eEeeec--ccee--------cccCCH----HH-HHHHHHHHHHcccccCceEEEEcceeeee
Q 012326 81 AIAMGMAKSLGL-ETP--FAMISG--SEIF--------SLEMSK----TE-ALMQAFRKAIGVRIKEEAEVIEGEVVEVQ 142 (466)
Q Consensus 81 ~lA~~ia~~l~~-~~p--~~~i~~--~~~~--------~~e~~~----~~-~l~~~~~~a~~~~~~~~~ii~~dEid~~~ 142 (466)
++|++++.+... .-| |+.+.. .+++ +.++.+ ++ .+..++..+... .|++++.|++|++.
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~---~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG---AVDVIVVDSVAALT 1173 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT---CCSEEEESCGGGCC
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhc---CCeEEEeCchHhcC
Confidence 999999875532 133 443332 1122 334444 44 677777666543 49999999999999
Q ss_pred ccC
Q 012326 143 IDR 145 (466)
Q Consensus 143 ~~~ 145 (466)
+.+
T Consensus 1174 ~~~ 1176 (1706)
T 3cmw_A 1174 PKA 1176 (1706)
T ss_dssp CHH
T ss_pred ccc
Confidence 874
No 100
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.92 E-value=0.0002 Score=70.50 Aligned_cols=65 Identities=32% Similarity=0.379 Sum_probs=50.1
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGV 125 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~ 125 (466)
++.+..|..++..++|.|+||+|||++|..+|..+...- ....+++.|++..+...++.....++
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-----~~vl~~slE~s~~~l~~R~~~~~~~i 122 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND-----DVVNLHSLEMGKKENIKRLIVTAGSI 122 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-----CEEEEEESSSCHHHHHHHHHHHHTTC
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-----CeEEEEECCCCHHHHHHHHHHHHcCC
Confidence 344457888889999999999999999999987653210 23567888999999888888766554
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.86 E-value=1.4e-05 Score=78.64 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=41.2
Q ss_pred CCCCCCCCcccccCCcCCcH-HHHHHHHHHHHHHHcCC-CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 27 LGLDSSLEARDVSEGMVGQL-PARKAAGVILQMIKEGK-IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 27 ~~~~~~~~p~~~~~~lvG~~-~~k~~l~~~l~~l~~~~-~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++...+++..+ +++++.. ....++..+.+.+.... .++.+++|+||||||||++|.++++.+.
T Consensus 112 ~~l~~~~~~~tf-d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 112 VSLPKSYRHIHL-SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp ESSCGGGGSCCG-GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCHHHHhCCH-hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555555555 7877643 22333333334444321 1258999999999999999999998774
No 102
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.78 E-value=0.00015 Score=74.80 Aligned_cols=66 Identities=27% Similarity=0.387 Sum_probs=49.8
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGV 125 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~ 125 (466)
++.+.+|..++..++|+|+||+|||++|..+|..+.... -....+++.|++..+...+++....++
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~----g~~vl~~slE~~~~~l~~R~~~~~~~i 255 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE----GVGVGIYSLEMPAAQLTLRMMCSEARI 255 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT----CCCEEEEESSSCHHHHHHHHHHHHTTC
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHcCC
Confidence 445557888889999999999999999999987653100 123557888999988888887766554
No 103
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.76 E-value=0.00038 Score=71.83 Aligned_cols=65 Identities=32% Similarity=0.359 Sum_probs=50.6
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGV 125 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~ 125 (466)
++.+.+|..++..+++.|+||+|||++|..+|..+... -....+++.|++..+...++++...++
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-----g~~vl~fSlEms~~ql~~R~~~~~~~i 251 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-----DDVVNLHSLEMGKKENIKRLIVTAGSI 251 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-----TCEEEEECSSSCTTHHHHHHHHHHSCC
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHHHcCC
Confidence 34455688888999999999999999999998765321 123567899999999888888765554
No 104
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.75 E-value=0.00066 Score=72.20 Aligned_cols=46 Identities=24% Similarity=0.147 Sum_probs=36.0
Q ss_pred CCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHH
Q 012326 40 EGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
..++|++...+.+...+ .......+.++|+||+|+|||++|..+++
T Consensus 124 ~~~vGR~~~l~~L~~~L---~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKL---SKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHH---TTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHH---hcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 67899999988875544 32222347899999999999999999874
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.75 E-value=9.8e-05 Score=66.53 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=45.9
Q ss_pred cceeeeecc---ccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhh--hhhhccCCCCHHHH
Q 012326 290 PGVLFIDEV---HMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDR--LLIISTKPYTRDEI 364 (466)
Q Consensus 290 ~~vl~iDEi---~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR--~~~i~~~pl~~~el 364 (466)
+.++++||+ ..+++.....+.+.+++. ...+++++++ .....+...+.+| +.++.+.+.+.+++
T Consensus 100 p~llilDEigp~~~ld~~~~~~l~~~l~~~-~~~~i~~~H~----------~h~~~~~~~i~~r~~~~i~~~~~~~r~~~ 168 (178)
T 1ye8_A 100 RKVIIIDEIGKMELFSKKFRDLVRQIMHDP-NVNVVATIPI----------RDVHPLVKEIRRLPGAVLIELTPENRDVI 168 (178)
T ss_dssp TCEEEECCCSTTGGGCHHHHHHHHHHHTCT-TSEEEEECCS----------SCCSHHHHHHHTCTTCEEEECCTTTTTTH
T ss_pred CCEEEEeCCCCcccCCHHHHHHHHHHHhcC-CCeEEEEEcc----------CCCchHHHHHHhcCCcEEEEecCcCHHHH
Confidence 679999995 445678888888888873 3435666642 0022344567777 66778888777666
Q ss_pred HHHHHH
Q 012326 365 RKILDI 370 (466)
Q Consensus 365 ~~iL~~ 370 (466)
...+..
T Consensus 169 ~~~l~~ 174 (178)
T 1ye8_A 169 LEDILS 174 (178)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 106
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.73 E-value=2.7e-05 Score=76.61 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=50.5
Q ss_pred cCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHH-HHHHHHHHHHcccccCceEEEEccee
Q 012326 61 EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTE-ALMQAFRKAIGVRIKEEAEVIEGEVV 139 (466)
Q Consensus 61 ~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~-~l~~~~~~a~~~~~~~~~ii~~dEid 139 (466)
.|.++++.++|+||||||||++|.+++...+..+.|+.....+..+......+ .+..+...... .. ++++|++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~----~~-LLVIDsI~ 192 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ----HR-VIVIDSLK 192 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH----CS-EEEEECCT
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh----CC-EEEEeccc
Confidence 56777788899999999999999999987554556666622222222222223 44444443332 13 99999999
Q ss_pred eeeccC
Q 012326 140 EVQIDR 145 (466)
Q Consensus 140 ~~~~~~ 145 (466)
.+....
T Consensus 193 aL~~~~ 198 (331)
T 2vhj_A 193 NVIGAA 198 (331)
T ss_dssp TTC---
T ss_pred cccccc
Confidence 985543
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.73 E-value=4.6e-05 Score=94.05 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=69.6
Q ss_pred cceeeeeccccccHH------HHHHHHHHhhhcC-----CCeEEEEeccceeEeecccccCC-----CCCChhHHhhhhh
Q 012326 290 PGVLFIDEVHMLDVE------CFSFLNRALENEM-----APILVVATNRGITRIRGTNYKSA-----HGIPMDLLDRLLI 353 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~------~~~~L~~~le~~~-----~~iiil~tn~~~~~~~~~~~~~~-----~~l~~~llsR~~~ 353 (466)
+.|+||||++.-..+ ....|.+.++... ...++-. ..+++.++ +.+| ..+++.|++||.+
T Consensus 1375 ~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i---~d~~~vaa-mnPp~~gGr~~l~~Rf~r~F~v 1450 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL---DKIQFVGA-CNPPTDAGRVQLTHRFLRHAPI 1450 (3245)
T ss_dssp EEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE---SSEEEEEE-ECCTTSTTCCCCCHHHHTTCCE
T ss_pred eEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe---cCeEEEEE-cCCCCCCCCccCCHHHHhhceE
Confidence 469999999987543 6777777776421 0001100 01122211 1112 4689999999999
Q ss_pred hccCCCCHHHHHHHHHHHHhhcC------CccCHHHHHHHHHhc--------------CCCCHHHHHHHHHHHHHH
Q 012326 354 ISTKPYTRDEIRKILDIRCQEED------VEMAEDAKQLLTRVG--------------EGTSLRYAIHLITAAALA 409 (466)
Q Consensus 354 i~~~pl~~~el~~iL~~~~~~~~------~~i~~~~l~~l~~~a--------------~~g~~R~ai~lL~~a~~~ 409 (466)
+.+..++.+++..|...+....- ..+.+..+...+++. ..-++|...+.++.....
T Consensus 1451 i~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~ 1526 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA 1526 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHh
Confidence 99999999999999876544221 122344444444321 124889888888776543
No 108
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.68 E-value=0.00026 Score=73.26 Aligned_cols=66 Identities=27% Similarity=0.439 Sum_probs=48.1
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHcc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGV 125 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~ 125 (466)
++.+..|..++..++|.|+||+|||+++..++..+... .-....+++.|++..+...+++....++
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~----~g~~Vl~~s~E~s~~~l~~r~~~~~~~~ 258 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK----TNENVAIFSLEMSAQQLVMRMLCAEGNI 258 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH----SSCCEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEEECCCCHHHHHHHHHHHHcCC
Confidence 34455688888999999999999999999998865310 0013457788888887777776655554
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.62 E-value=0.0014 Score=81.16 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=66.9
Q ss_pred eeeeeccccccHHHHHHHHHHhh-------hc--------------CCCe-EEEEeccceeEeecccccCCCCCChhHHh
Q 012326 292 VLFIDEVHMLDVECFSFLNRALE-------NE--------------MAPI-LVVATNRGITRIRGTNYKSAHGIPMDLLD 349 (466)
Q Consensus 292 vl~iDEi~~l~~~~~~~L~~~le-------~~--------------~~~i-iil~tn~~~~~~~~~~~~~~~~l~~~lls 349 (466)
-.++||++++..+.++.+...+. .. ..++ ++++.|- .+.....+|+.|.+
T Consensus 659 W~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp--------gY~gr~eLP~nLk~ 730 (3245)
T 3vkg_A 659 WGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP--------GYAGRSNLPDNLKK 730 (3245)
T ss_dssp EEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC--------CGGGCCCSCHHHHT
T ss_pred EEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC--------CccCcccChHHHHh
Confidence 66789999998888777655433 11 0122 3333331 11223689999999
Q ss_pred hhhhhccCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHh--------c----CCCCHHHHHHHHHHHHHHH
Q 012326 350 RLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRV--------G----EGTSLRYAIHLITAAALAS 410 (466)
Q Consensus 350 R~~~i~~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~--------a----~~g~~R~ai~lL~~a~~~a 410 (466)
||..+.+..|+.+.+.+|+-. .+|..-.......++.. + .+=++|.....|..|..+-
T Consensus 731 lFr~v~m~~Pd~~~i~ei~L~---s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lk 800 (3245)
T 3vkg_A 731 LFRSMAMIKPDREMIAQVMLY---SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIK 800 (3245)
T ss_dssp TEEEEECCSCCHHHHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred hcEEEEEeCCCHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHH
Confidence 999999999999888888654 33443333333332221 1 1246899888888876543
No 110
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.61 E-value=3.8e-05 Score=70.61 Aligned_cols=57 Identities=11% Similarity=-0.029 Sum_probs=35.2
Q ss_pred cceeeeecccccc--H-HHH--HHHHHHhhhcC-CC-eEEEEeccceeEeecccccCCCCCChhHHhhh-hhhccCC
Q 012326 290 PGVLFIDEVHMLD--V-ECF--SFLNRALENEM-AP-ILVVATNRGITRIRGTNYKSAHGIPMDLLDRL-LIISTKP 358 (466)
Q Consensus 290 ~~vl~iDEi~~l~--~-~~~--~~L~~~le~~~-~~-iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~-~~i~~~p 358 (466)
..|++|||+|.+. . +.. ..++..++... .. .+|++++. +..++.++++|+ ..+++.+
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~------------~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG------------PKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC------------GGGBCHHHHTTEEEEEEEEE
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC------------HHHHhHHHHHHhheEEEEcC
Confidence 5699999999982 1 111 12333333322 22 37777764 678888899998 5566665
No 111
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.61 E-value=0.0024 Score=67.52 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHH
Q 012326 43 VGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 43 vG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
+|++..++.+...+.. .+....+.+.|+|++|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~--~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDE--MCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHH--HTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhc--ccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5999999988666532 2122347888999999999999999997
No 112
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.56 E-value=9.5e-05 Score=76.63 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=36.8
Q ss_pred CCCCCCCCCcccccCCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 26 GLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 26 ~~~~~~~~~p~~~~~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.-+|.++|+|..+ +++- +..++++..++..+..+. +++++.|+||||||+++.+++..+.
T Consensus 11 ~~~~~~~~~p~~~-~~Ln--~~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 11 SSGLVPRGSHMTF-DDLT--EGQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp ----------CCS-SCCC--HHHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCccccCCCcc-ccCC--HHHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999988 7774 444445554455565533 4899999999999999999988774
No 113
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.51 E-value=0.0016 Score=74.83 Aligned_cols=47 Identities=19% Similarity=0.077 Sum_probs=36.3
Q ss_pred CCcCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHH
Q 012326 40 EGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 40 ~~lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
..++|++...+.+... +..+....+.+.|+|++|+|||+||+.+++.
T Consensus 124 ~~~vgR~~~~~~l~~~---l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQK---LWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SSCCCCHHHHHHHHHH---HHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred ceeccHHHHHHHHHHH---HhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 6789999998887554 4333333478889999999999999988754
No 114
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.46 E-value=0.00026 Score=64.10 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=33.8
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEEeccceeEeecccccCCCCCChhHHhhh
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRL 351 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~tn~~~~~~~~~~~~~~~~l~~~llsR~ 351 (466)
..+++|||+|.++++....|.+..+. ..++++..... . + ...++...+.|++++
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~-~~~Vi~~Gl~~-~--f----~~~~f~~~~~ll~~a 130 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDR-GIDVFCAGLDL-T--H----KQNPFETTALLLSLA 130 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHT-TCEEEEEEESB-C--T----TSCBCHHHHHHHHHC
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHC-CCCEEEEeecc-c--c----ccCCccchHHHHHHh
Confidence 46999999999987777777777665 44444444321 1 0 011344556788777
No 115
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.34 E-value=0.00017 Score=64.00 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=27.6
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCCceEeee
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMIS 100 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~ 100 (466)
+..++|+|+||+||||+++.+++.++ .+|+.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~--~~~~~~~ 35 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP--EPWLAFG 35 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS--SCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC--CCeEEec
Confidence 36899999999999999999999997 4565443
No 116
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.29 E-value=0.00017 Score=64.48 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=26.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
++.++|+||||+||||+|+.+|+.++ .+|+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~--~~~i 34 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK--RILY 34 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC--CCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC--CCEE
Confidence 46899999999999999999999998 4555
No 117
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.18 E-value=0.00027 Score=64.40 Aligned_cols=31 Identities=32% Similarity=0.590 Sum_probs=27.1
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
++..++|.||||+||||+++.+++.++ .+|+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~--~~~i 54 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN--VPFI 54 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT--CCEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC--CCEE
Confidence 457899999999999999999999998 4554
No 118
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.13 E-value=0.00035 Score=62.75 Aligned_cols=27 Identities=30% Similarity=0.620 Sum_probs=24.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+..++|.|+||+||||+++.+++.++
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 357889999999999999999999987
No 119
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.12 E-value=0.00044 Score=65.25 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=29.8
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecc
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSL 107 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~ 107 (466)
++..++|.||||+||||+|+.+++.++ .++ ++.+++...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g--~~~--is~~~~~r~ 66 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC--YCH--LSTGDLLRE 66 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC--CEE--EEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC--CeE--EecHHHHHH
Confidence 457899999999999999999999987 443 344444433
No 120
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.10 E-value=0.00087 Score=64.98 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHcCCC---CCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeec
Q 012326 46 LPARKAAGVILQMIKEGKI---AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISG 101 (466)
Q Consensus 46 ~~~k~~l~~~l~~l~~~~~---~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~ 101 (466)
++..+.+..++..+..+.. .+..++|.||||+||||+|+.+++.+.. .+..+++
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~--~~~~Is~ 66 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 66 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCC--CeEEEec
Confidence 4445555555555544332 2477889999999999999999998842 2344554
No 121
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.09 E-value=0.00073 Score=64.08 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCC---CCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccce
Q 012326 48 ARKAAGVILQMIKEGKI---AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEI 104 (466)
Q Consensus 48 ~k~~l~~~l~~l~~~~~---~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~ 104 (466)
....+..++..+..+.. .+..++|.||||+||||+|+.+++.++. ++..+++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~--~~~~~~~D~~ 68 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQG--NIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTT--CCEEECGGGG
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCC--CcEEEecHHH
Confidence 33344444444443322 2578899999999999999999999862 3344444443
No 122
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.08 E-value=0.00038 Score=61.33 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=26.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
.+++|.|+||+||||+++.+|+.++ .|++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg--~~~i 36 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK--LEVL 36 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT--CCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CCEE
Confidence 6899999999999999999999998 5655
No 123
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.06 E-value=0.00042 Score=60.85 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=25.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
..++|.||||+||||+++.+++.++ .+++
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~--~~~i 30 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK--YPII 30 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC--CCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--Ceee
Confidence 3688999999999999999999998 4554
No 124
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.04 E-value=0.00037 Score=61.91 Aligned_cols=29 Identities=31% Similarity=0.562 Sum_probs=25.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
+.++|.||||+||||+|+.+|+.++ .+|+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~--~~~~ 33 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD--LVFL 33 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT--CEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC--CCEE
Confidence 3689999999999999999999998 5554
No 125
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.03 E-value=0.00042 Score=61.13 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=23.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..+.|+||||+||||+++.++..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 6789999999999999999999987
No 126
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.03 E-value=0.00029 Score=65.60 Aligned_cols=41 Identities=20% Similarity=0.518 Sum_probs=31.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEM 109 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~ 109 (466)
.++.++|.||||+||+|.|+.+++.++ +..++..+++..++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g----~~hIstGdllR~~i 68 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH----FNHLSSGDLLRAEV 68 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC----CEEECHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC----CceEcHHHHHHHHH
Confidence 357888999999999999999999998 34556655554443
No 127
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.02 E-value=0.0024 Score=59.56 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=22.4
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHc
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
++..++++||||+|||+++..++..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45778889999999999999888766
No 128
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.00 E-value=0.00045 Score=61.60 Aligned_cols=26 Identities=35% Similarity=0.636 Sum_probs=24.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.++|+|+||+||||+++.+++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999997
No 129
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.99 E-value=0.00048 Score=61.59 Aligned_cols=29 Identities=34% Similarity=0.658 Sum_probs=25.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
..++|+|+||+||||+|+.+++.++ .+++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg--~~~i 31 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG--VGLL 31 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT--CCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC--CCEE
Confidence 4689999999999999999999998 5554
No 130
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.98 E-value=0.00048 Score=61.87 Aligned_cols=30 Identities=43% Similarity=0.615 Sum_probs=25.6
Q ss_pred CceEEEecCCCCChHHHHHHHHHH-cCCCCceE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKS-LGLETPFA 97 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~-l~~~~p~~ 97 (466)
+..++|+|+||+||||+++.+++. ++ .+++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g--~~~i 40 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDG--FQHL 40 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTT--EEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC--CEEe
Confidence 468999999999999999999998 66 4444
No 131
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.98 E-value=0.0071 Score=64.32 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=22.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+.+++.||||||||+++.+++..+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 37899999999999999999987663
No 132
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.91 E-value=0.00093 Score=79.70 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=48.9
Q ss_pred cCCCCCceEEEecCCCCChHHHHHHHHHHcC---CCCceEeeecc--ceeccc------------CCHHHHHHHHHHHHH
Q 012326 61 EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG---LETPFAMISGS--EIFSLE------------MSKTEALMQAFRKAI 123 (466)
Q Consensus 61 ~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~---~~~p~~~i~~~--~~~~~e------------~~~~~~l~~~~~~a~ 123 (466)
.|..++++++|+||||||||++|.+++.+.. ..+-|+..... ..+... ....+...+.+.+.+
T Consensus 1422 GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1422 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp SSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 4677789999999999999999999977643 22334433321 000000 112222222222111
Q ss_pred cccccCceEEEEcceeeeecc
Q 012326 124 GVRIKEEAEVIEGEVVEVQID 144 (466)
Q Consensus 124 ~~~~~~~~ii~~dEid~~~~~ 144 (466)
+-..|++|++|+++++.+.
T Consensus 1502 --r~~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1502 --RSGAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp --HHTCCSEEEESCGGGCCCH
T ss_pred --hcCCCCEEEEcChhHhccc
Confidence 1235999999999998873
No 133
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.91 E-value=0.00038 Score=64.21 Aligned_cols=37 Identities=32% Similarity=0.453 Sum_probs=29.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceeccc
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE 108 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e 108 (466)
.|+|.||||+||+|.|+.+++.++ ++ .++..+++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g--~~--~istGdllR~~ 38 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG--FV--HISTGDILREA 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CE--EEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC--Ce--EEcHHHHHHHH
Confidence 478899999999999999999998 33 55655555443
No 134
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.91 E-value=0.00061 Score=61.03 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=24.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|.|+||+||||+|+.+++.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999999987
No 135
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.89 E-value=0.00064 Score=62.76 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=26.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
+..++|.|+||+||||+|+.+++.++ .+++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i 34 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG--LAHL 34 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC--CEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC--ceEE
Confidence 46789999999999999999999997 4444
No 136
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.89 E-value=0.00055 Score=61.46 Aligned_cols=37 Identities=32% Similarity=0.653 Sum_probs=28.2
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeecc
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGS 102 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~ 102 (466)
.++..+.|.||||+||||+++.++...+ .+.+.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~--~g~i~i~~d 43 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPG--VPKVHFHSD 43 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSS--SCEEEECTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccC--CCeEEEccc
Confidence 3457889999999999999999998754 444444443
No 137
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.88 E-value=0.00076 Score=59.72 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=25.0
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..++|.||||+||||+++.++..++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 3457899999999999999999999887
No 138
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.86 E-value=0.0006 Score=60.66 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=21.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
+..++|.|+||+||||+|+.+++.++ .+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~--~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP--GSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST--TCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC--CCEE
Confidence 36789999999999999999999998 4444
No 139
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.86 E-value=0.00075 Score=61.31 Aligned_cols=30 Identities=40% Similarity=0.639 Sum_probs=25.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
+..++|.|+||+||||+|+.+++.++ .+++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~--~~~i 49 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG--IPQI 49 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT--CCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CcEE
Confidence 35789999999999999999999997 4544
No 140
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.86 E-value=0.00059 Score=60.95 Aligned_cols=26 Identities=46% Similarity=0.802 Sum_probs=23.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|.|+||+||||+++.+++.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999999887
No 141
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.84 E-value=0.00074 Score=60.71 Aligned_cols=26 Identities=23% Similarity=0.560 Sum_probs=24.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|.|+||+||||+|+.+++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999999997
No 142
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.83 E-value=0.0014 Score=68.62 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=51.2
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceecccCCHHHHHHHHHHHHHccc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLEMSKTEALMQAFRKAIGVR 126 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e~~~~~~l~~~~~~a~~~~ 126 (466)
++.+..|..++..++|.|+||+|||++|..+|..+.... -....+++.|++..+.+.++++...++.
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~----g~~vl~~s~E~s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM----GKKVGLAMLEESVEETAEDLIGLHNRVR 298 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS----CCCEEEEESSSCHHHHHHHHHHHHTTSC
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc----CCcEEEEeccCCHHHHHHHHHHHHcCCC
Confidence 344446888889999999999999999999998775310 1234677889999888888888776654
No 143
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.82 E-value=0.00089 Score=61.80 Aligned_cols=26 Identities=23% Similarity=0.462 Sum_probs=24.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|.|+||+||||+|+.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999997
No 144
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.82 E-value=0.00076 Score=59.37 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=25.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
..++|.|+||+||||+|+.+++.++ .+++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg--~~~i 31 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG--YEFV 31 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT--CEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CcEE
Confidence 4689999999999999999999998 4444
No 145
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.78 E-value=0.0011 Score=58.95 Aligned_cols=35 Identities=34% Similarity=0.676 Sum_probs=28.5
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHc---CCCCceEeeec
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSL---GLETPFAMISG 101 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l---~~~~p~~~i~~ 101 (466)
++..+.|+|++|+||||+++.++..+ + .|++.+.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g--~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG--IPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCC--CcEEEECC
Confidence 45788999999999999999999987 5 55655543
No 146
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.78 E-value=0.00068 Score=59.97 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=22.1
Q ss_pred ceEEEecCCCCChHHHHHHHHH-HcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK-SLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~-~l~ 91 (466)
..++|.|+||+||||+|+.+++ .++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 5789999999999999999998 444
No 147
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.77 E-value=0.00092 Score=63.50 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=25.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceEe
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAM 98 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~ 98 (466)
..++|.||||+||||+|+.+|+.++ .+++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~--~~~i~ 31 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG--WPVVA 31 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC--CCEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC--CeEEe
Confidence 3678999999999999999999997 44543
No 148
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.77 E-value=0.00096 Score=58.33 Aligned_cols=24 Identities=42% Similarity=0.768 Sum_probs=21.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++|.||||+||||+|+.+ +.++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 36889999999999999999 8777
No 149
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.76 E-value=0.00097 Score=62.19 Aligned_cols=54 Identities=24% Similarity=0.260 Sum_probs=38.8
Q ss_pred HcCCCCCceEEEecCCCCChHHHHHHHHHHc--CCCCceEeeeccceecccCCHHHHHHHHH
Q 012326 60 KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL--GLETPFAMISGSEIFSLEMSKTEALMQAF 119 (466)
Q Consensus 60 ~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l--~~~~p~~~i~~~~~~~~e~~~~~~l~~~~ 119 (466)
.+|.+++..++++|+||+|||++|..+|... ... ....+++.|++..+...++.
T Consensus 24 ~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~------~~v~~~s~E~~~~~~~~~~~ 79 (251)
T 2zts_A 24 EGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG------EPGVFVTLEERARDLRREMA 79 (251)
T ss_dssp TTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC------CCEEEEESSSCHHHHHHHHH
T ss_pred cCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC------CCceeecccCCHHHHHHHHH
Confidence 4688888999999999999999999876432 111 22345677888777665554
No 150
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.76 E-value=0.00065 Score=60.72 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|.||||+||||+++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999886
No 151
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.75 E-value=0.016 Score=61.09 Aligned_cols=68 Identities=24% Similarity=0.258 Sum_probs=49.3
Q ss_pred cceeeeeccccccH----HHHHHHHHHhhhcC-CCe-EEEEeccceeEeecccccCCC--CCChhHHhhh-hhhccCCCC
Q 012326 290 PGVLFIDEVHMLDV----ECFSFLNRALENEM-API-LVVATNRGITRIRGTNYKSAH--GIPMDLLDRL-LIISTKPYT 360 (466)
Q Consensus 290 ~~vl~iDEi~~l~~----~~~~~L~~~le~~~-~~i-iil~tn~~~~~~~~~~~~~~~--~l~~~llsR~-~~i~~~pl~ 360 (466)
+-+++|||++.+.. +....|.++..... .-+ +|++|.+ |. .++..+++-| .++.|.--+
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQR------------Ps~d~I~~~Iran~~~RI~lrv~s 411 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQR------------PSVDVITGLIKANIPTRIAFQVSS 411 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESC------------CCTTTSCHHHHHTCCEEEEECCSC
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecC------------cccccccHHHHhhhccEEEEEcCC
Confidence 46899999997743 44555666655543 334 7888877 64 7888888888 677888888
Q ss_pred HHHHHHHHH
Q 012326 361 RDEIRKILD 369 (466)
Q Consensus 361 ~~el~~iL~ 369 (466)
..+...+|.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888888874
No 152
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.73 E-value=0.00099 Score=61.17 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=22.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHcC
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++|.||||+||||+|+.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999987
No 153
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.72 E-value=0.00098 Score=60.02 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=24.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|.|+||+||||+|+.+++.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999999997
No 154
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.70 E-value=0.001 Score=59.45 Aligned_cols=25 Identities=28% Similarity=0.680 Sum_probs=23.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++|.|+||+||||+|+.+++.++
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6789999999999999999999987
No 155
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.70 E-value=0.0011 Score=60.26 Aligned_cols=25 Identities=24% Similarity=0.638 Sum_probs=23.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++|.|+||+||||+|+.+++.++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999987
No 156
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.67 E-value=0.0015 Score=59.44 Aligned_cols=27 Identities=44% Similarity=0.727 Sum_probs=24.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||+|+||||+++.++..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 357899999999999999999999886
No 157
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.66 E-value=0.0013 Score=60.37 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=22.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHcC
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++|.||||+||||+|+.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999987
No 158
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.66 E-value=0.0013 Score=61.41 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=25.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
..++|.|+||+||||+|+.+++.++ .+++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~--~~~i 45 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC--VCHL 45 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT--CEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--Ccee
Confidence 6799999999999999999999997 4444
No 159
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.65 E-value=0.0013 Score=57.63 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
.++|.|+||+||||+|+.+++.++ .+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~--~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN--IPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT--CCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEE
Confidence 588999999999999999999988 4554
No 160
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.64 E-value=0.0012 Score=61.20 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=24.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|.|+||+||||+|+.+++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999999987
No 161
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.63 E-value=0.0022 Score=64.67 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=31.6
Q ss_pred HHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 54 VILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 54 ~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+++.+.-+..++..++|+||||+||||+++.++...+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34555555777778999999999999999999998875
No 162
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.61 E-value=0.0012 Score=59.88 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=24.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
+..++|.|+||+||||+|+.+++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999874
No 163
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.58 E-value=0.0015 Score=59.16 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=23.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++|.|+||+||||+++.+++.++
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788999999999999999999987
No 164
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.57 E-value=0.0011 Score=61.18 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=24.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|.||||+||||+++.+++.++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999999997
No 165
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.56 E-value=0.0015 Score=58.47 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=24.4
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+++.+.|.||+|+||||+++.++..+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3457899999999999999999998763
No 166
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.56 E-value=0.0082 Score=56.22 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=22.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.++++||+|+|||.+|..++..++
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999988775
No 167
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.52 E-value=0.0017 Score=63.95 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=28.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSE 103 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~ 103 (466)
+.++|+||||+|||++|+.+|+.++ .+++..+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~--~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP--CELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC--EEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC--CcEEeccchh
Confidence 5789999999999999999999997 4565554433
No 168
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.51 E-value=0.0012 Score=58.85 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=22.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++|.|+||+||||+++.+++.++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999886
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.49 E-value=0.0019 Score=59.04 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=27.8
Q ss_pred HHHHH-cCCCCCceEEEecCCCCChHHHHHHHHH
Q 012326 56 LQMIK-EGKIAGRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 56 l~~l~-~~~~~~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
++.+. +|..++..++|+||||+|||++++.++.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44444 4777788999999999999999999997
No 170
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.48 E-value=0.0016 Score=59.47 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=24.4
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+++.++|.||||+||||+++.+++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 467899999999999999999999874
No 171
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.48 E-value=0.0016 Score=60.62 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=26.8
Q ss_pred HcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 60 KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 60 ~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
..|..++..++|+||||+|||+++..++..+
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5677788899999999999999999887654
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.48 E-value=0.0016 Score=59.18 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=24.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||+|+||||+++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999883
No 173
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.47 E-value=0.002 Score=61.15 Aligned_cols=30 Identities=43% Similarity=0.710 Sum_probs=26.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
+..+.|.|++|+||||+++.+|+.++ .+|+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg--~~~~ 77 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG--YTFF 77 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT--CEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC--CcEE
Confidence 57899999999999999999999998 4444
No 174
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.44 E-value=0.015 Score=62.27 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=21.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHc
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.+.+++.||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3689999999999999988877655
No 175
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.43 E-value=0.0021 Score=59.29 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=23.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..+.|.||+|+||||+++.+++.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999987
No 176
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.43 E-value=0.0021 Score=59.06 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=22.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHcC
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++|.|+||+||||+|+.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999887
No 177
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.41 E-value=0.0018 Score=59.54 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=28.1
Q ss_pred HHHHHc-CCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 56 LQMIKE-GKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 56 l~~l~~-~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
++.+.. |..++..++|+||||+|||++++.++..+
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344443 66777889999999999999999999655
No 178
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.37 E-value=0.012 Score=69.42 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=26.9
Q ss_pred CCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 62 ~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
|..++..++|+||||+|||+||..+|..+.
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 677889999999999999999999988663
No 179
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.004 Score=63.06 Aligned_cols=79 Identities=14% Similarity=0.238 Sum_probs=58.4
Q ss_pred ccCCCCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhh----cchh---hHHHHhhhccccc
Q 012326 183 KVQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHC----VTLH---EIDVINSRTQGFL 255 (466)
Q Consensus 183 ~~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~----~~l~---~ld~~~~~~~~~~ 255 (466)
++...+.|.|.++||+++.+|+++.||+|||. ..++|+| +...|..++.. +.+. +++.++..+.||+
T Consensus 281 g~~~~~~V~vIaATNrpd~LDpAllRpGRfD~----~I~i~lP--d~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~S 354 (405)
T 4b4t_J 281 GFETSKNIKIIMATNRLDILDPALLRPGRIDR----KIEFPPP--SVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCS 354 (405)
T ss_dssp TTTCCCCEEEEEEESCSSSSCHHHHSTTSSCC----EEECCCC--CHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCC
T ss_pred ccCCCCCeEEEeccCChhhCCHhHcCCCcCce----EEEcCCc--CHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCC
Confidence 44445668899999999999999999999999 7788888 45677777742 2222 6788889999987
Q ss_pred ccccCCccchhHHHHHHH
Q 012326 256 ALFTGDTGEIRAEVREQI 273 (466)
Q Consensus 256 ~l~~~~~~ei~~~~r~~i 273 (466)
+ .+|..-++++.
T Consensus 355 G------ADi~~l~~eA~ 366 (405)
T 4b4t_J 355 G------ADVKGVCTEAG 366 (405)
T ss_dssp H------HHHHHHHHHHH
T ss_pred H------HHHHHHHHHHH
Confidence 6 44555555443
No 180
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.33 E-value=0.0015 Score=59.39 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|.|+||+||||+++.+++.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999876
No 181
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.33 E-value=0.0024 Score=59.95 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=24.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
+..+.|.||||+||||+++.+++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999999884
No 182
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.31 E-value=0.0027 Score=57.40 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=23.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHHc
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+..+.|.|+||+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999988
No 183
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.31 E-value=0.0022 Score=57.75 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=22.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHcC
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+.|.|+||+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999999999998
No 184
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.29 E-value=0.0026 Score=58.93 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHcC
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++|.|+||+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999987
No 185
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.29 E-value=0.0019 Score=60.00 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=27.0
Q ss_pred HcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 60 KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 60 ~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
..|..++..++|+||||+|||++++.++...
T Consensus 18 ~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 18 QGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3567778899999999999999999999864
No 186
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.26 E-value=0.0032 Score=56.24 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHc
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.+.|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987
No 187
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.25 E-value=0.0027 Score=56.80 Aligned_cols=27 Identities=44% Similarity=0.679 Sum_probs=24.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..++|.|+||+||||+++.++..+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999875
No 188
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.25 E-value=0.0036 Score=59.52 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=22.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHc
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+..++|.|+||+||||+|+.+++.+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999973
No 189
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.25 E-value=0.0035 Score=57.33 Aligned_cols=36 Identities=25% Similarity=0.510 Sum_probs=27.3
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.+.....++..+.|.||+|+||||+++.++..+.
T Consensus 12 ~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 12 LERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 343333234457788999999999999999999874
No 190
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.21 E-value=0.022 Score=54.51 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=79.4
Q ss_pred cceeeeeccccccH-----------HHHHHHHHHhhhc---CCCeEEEEeccceeEeecccccCCCCCChhHHh--hh-h
Q 012326 290 PGVLFIDEVHMLDV-----------ECFSFLNRALENE---MAPILVVATNRGITRIRGTNYKSAHGIPMDLLD--RL-L 352 (466)
Q Consensus 290 ~~vl~iDEi~~l~~-----------~~~~~L~~~le~~---~~~iiil~tn~~~~~~~~~~~~~~~~l~~~lls--R~-~ 352 (466)
++++++||++.+.. ...+.+...+... ...+++.+||+ |..+++++++ |+ .
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~------------p~~LD~al~r~gRfd~ 171 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNR------------PDIIDPAILRPGRLDK 171 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESC------------GGGSCHHHHSTTSSCE
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCC------------hhhCCHhhcCcccCCe
Confidence 67999999998632 1223333333321 12346666766 7788899987 77 6
Q ss_pred hhccCCCCHHHHHHHHHHHHhhc-CCccCHH-HHHHHHHhc--CCCCHHHHHHHHHHHHHHHhhh-----------cCCc
Q 012326 353 IISTKPYTRDEIRKILDIRCQEE-DVEMAED-AKQLLTRVG--EGTSLRYAIHLITAAALASQKR-----------KGKV 417 (466)
Q Consensus 353 ~i~~~pl~~~el~~iL~~~~~~~-~~~i~~~-~l~~l~~~a--~~g~~R~ai~lL~~a~~~a~~~-----------~~~~ 417 (466)
.+.+.+|+.++..+||+..++.. ...++.+ -++.++... .+-+...+.++++.|+..|... +...
T Consensus 172 ~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~ 251 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELK 251 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CC
T ss_pred EEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCe
Confidence 78899999999999999877543 2223222 255566532 1244566667777776555322 2336
Q ss_pred cCHHHHHHHHH
Q 012326 418 VEVQDIDRVYR 428 (466)
Q Consensus 418 It~~~v~~~~~ 428 (466)
|+.+|+..|+.
T Consensus 252 i~~~df~~al~ 262 (274)
T 2x8a_A 252 VSHKHFEEAFK 262 (274)
T ss_dssp BCHHHHHHHHT
T ss_pred ecHHHHHHHHH
Confidence 88888888764
No 191
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.20 E-value=0.0036 Score=60.46 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=30.3
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.+..+..++..++|.||||+|||+|++.++..+.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 444556778888999999999999999999998763
No 192
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.20 E-value=0.0035 Score=56.18 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=21.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHc
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l 90 (466)
-+.|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999988
No 193
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.19 E-value=0.051 Score=56.73 Aligned_cols=68 Identities=26% Similarity=0.249 Sum_probs=45.0
Q ss_pred ceeeeeccccccHH----HHHHHHHHhhhcC-CCe-EEEEeccceeEeecccccCCC--CCChhHHhhh-hhhccCCCCH
Q 012326 291 GVLFIDEVHMLDVE----CFSFLNRALENEM-API-LVVATNRGITRIRGTNYKSAH--GIPMDLLDRL-LIISTKPYTR 361 (466)
Q Consensus 291 ~vl~iDEi~~l~~~----~~~~L~~~le~~~-~~i-iil~tn~~~~~~~~~~~~~~~--~l~~~llsR~-~~i~~~pl~~ 361 (466)
-+++|||.+.+... ....+.++..... ..+ +|++|.+ |. .++..+++.| .++.|.--+.
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQr------------p~~dvl~~~i~~n~~~RI~lrv~s~ 366 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQR------------PSVDVITGLIKANIPTRIAFTVSSK 366 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESC------------CCTTTSCHHHHHHCCEEEEECCSSH
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecC------------CccccccHHHHhhcCCeEEEEcCCH
Confidence 48899999876442 2333333433322 234 7788877 54 5777788877 6778888888
Q ss_pred HHHHHHHHH
Q 012326 362 DEIRKILDI 370 (466)
Q Consensus 362 ~el~~iL~~ 370 (466)
.+.+.++..
T Consensus 367 ~dsr~ilg~ 375 (512)
T 2ius_A 367 IDSRTILDQ 375 (512)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHhcCC
Confidence 888888754
No 194
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.17 E-value=0.0028 Score=57.72 Aligned_cols=26 Identities=19% Similarity=0.412 Sum_probs=23.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|.|+||+||||+++.+++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999875
No 195
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.16 E-value=0.0034 Score=56.89 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
.+.|+|++|+||||+++.+++ ++ .+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g--~~~i 29 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG--AYVL 29 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT--CEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC--CEEE
Confidence 588999999999999999999 76 4544
No 196
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.16 E-value=0.0039 Score=56.45 Aligned_cols=28 Identities=36% Similarity=0.665 Sum_probs=24.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
.+.|.|++|+||||+++.+++.++ .|++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg--~~~~ 31 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG--VPYL 31 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--Ccee
Confidence 688999999999999999999998 4544
No 197
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.16 E-value=0.0058 Score=60.81 Aligned_cols=28 Identities=29% Similarity=0.669 Sum_probs=24.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCce
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPF 96 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~ 96 (466)
.+++|.||||+|||++++++|+.++ .+|
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~--~~f 52 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN--EKY 52 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH--HHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC--CCe
Confidence 4799999999999999999999887 455
No 198
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.15 E-value=0.0029 Score=57.99 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=23.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457788999999999999999998774
No 199
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.15 E-value=0.0028 Score=57.32 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=23.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHc
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
++..+.|.||+|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45788999999999999999999876
No 200
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.14 E-value=0.0027 Score=62.78 Aligned_cols=25 Identities=24% Similarity=0.600 Sum_probs=23.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.++|.||+|+|||+++..+|+.++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 5889999999999999999999987
No 201
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.09 E-value=0.0039 Score=60.90 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=23.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.++|.||+|+|||++|..+|+.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 36788999999999999999999987
No 202
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.07 E-value=0.0042 Score=58.28 Aligned_cols=25 Identities=40% Similarity=0.797 Sum_probs=23.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..+.|.||||+||||+++.+++.++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999998
No 203
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.04 E-value=0.0034 Score=62.71 Aligned_cols=30 Identities=37% Similarity=0.452 Sum_probs=26.9
Q ss_pred cCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 61 EGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 61 ~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.|.+++..++|+||||+|||+|+..++..+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 477778899999999999999999999765
No 204
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.03 E-value=0.003 Score=58.07 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=27.5
Q ss_pred HcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 60 KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 60 ~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..|..++..+.|.||+|+||||+++.++..+.
T Consensus 19 ~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 19 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cCCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35777788899999999999999999998653
No 205
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.02 E-value=0.0035 Score=56.96 Aligned_cols=28 Identities=39% Similarity=0.555 Sum_probs=23.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
..+.|+||+|+||||+++.++. ++ .+++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg--~~~i 30 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG--VPLV 30 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT--CCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC--Cccc
Confidence 3578999999999999999997 66 4544
No 206
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.02 E-value=0.0041 Score=56.18 Aligned_cols=26 Identities=27% Similarity=0.532 Sum_probs=23.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHc
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
++..+.|.||+|+||||+++.++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35678899999999999999999875
No 207
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.00 E-value=0.0048 Score=60.97 Aligned_cols=73 Identities=18% Similarity=0.325 Sum_probs=46.8
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceeccc--------C-CHHHHHHHHHHHHHcccccCceEEEE
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE--------M-SKTEALMQAFRKAIGVRIKEEAEVIE 135 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e--------~-~~~~~l~~~~~~a~~~~~~~~~ii~~ 135 (466)
++..+++.||+|+||||++++++..+....-.+.+.+....... . +.....+..++.+.. ..|.+++.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~---~~p~ilil 246 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLR---MRPDRIIL 246 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTT---SCCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhh---hCCCEEEE
Confidence 35789999999999999999999887643334444443221110 0 012244555555553 35999999
Q ss_pred cceee
Q 012326 136 GEVVE 140 (466)
Q Consensus 136 dEid~ 140 (466)
||..+
T Consensus 247 dE~~~ 251 (330)
T 2pt7_A 247 GELRS 251 (330)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 99665
No 208
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.96 E-value=0.004 Score=62.08 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=26.6
Q ss_pred cCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 61 EGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 61 ~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.|.+++..++|+||||+|||++|..++..+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 477788899999999999999999998655
No 209
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.95 E-value=0.0041 Score=56.30 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++|+|.||+|+||||+++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 6799999999999999999988764
No 210
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.94 E-value=0.005 Score=55.93 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=24.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
..+.|+|++|+||||+++.+++.++ .|++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg--~~vi 41 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYG--AHVV 41 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC--CEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CEEE
Confidence 4567899999999999999999887 5544
No 211
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.91 E-value=0.0059 Score=57.74 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=24.5
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||+|+||||+++.+++.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346788999999999999999999998
No 212
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.91 E-value=0.0036 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
..+.|.||+|+||||+++.++...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 467899999999999999999755
No 213
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.89 E-value=0.005 Score=55.44 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=24.6
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
+..+.|+|++|+||||+++.+++. + .+++
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g--~~~i 36 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-G--YPVL 36 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-T--CCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-C--CEEE
Confidence 367889999999999999999997 5 5554
No 214
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.88 E-value=0.0052 Score=56.25 Aligned_cols=27 Identities=22% Similarity=0.492 Sum_probs=24.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..++|.|+||+||||+++.+++.++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357889999999999999999999874
No 215
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.87 E-value=0.0049 Score=61.56 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=26.9
Q ss_pred cCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 61 EGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 61 ~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.|.+++..++|+||||+|||++|..++..+
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578888999999999999999999998765
No 216
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.85 E-value=0.006 Score=55.68 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=24.1
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+++.+.|.||+|+||||+++.+++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 468899999999999999999998764
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.85 E-value=0.0043 Score=57.76 Aligned_cols=29 Identities=38% Similarity=0.541 Sum_probs=25.0
Q ss_pred HcCCCCCceEEEecCCCCChHHHHHHHHH
Q 012326 60 KEGKIAGRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 60 ~~~~~~~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
.+|..++..+.|.||+|+|||||++.++.
T Consensus 24 ~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 24 EGGFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTSEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 34667788999999999999999999983
No 218
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.84 E-value=0.0055 Score=59.97 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=23.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.++|.||+|+|||++|..+|+.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 5788999999999999999999886
No 219
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.82 E-value=0.0042 Score=61.10 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=27.2
Q ss_pred cCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 61 EGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 61 ~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.|.+++..++|+||||+|||++|..++..+.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 5677788999999999999999999998753
No 220
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.76 E-value=0.0068 Score=55.49 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=25.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
..+.|+|+||+|||++++.+++.++ .+++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g--~~~~ 32 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS--MIYV 32 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT--CEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--Ccee
Confidence 5789999999999999999999998 4444
No 221
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.76 E-value=0.0058 Score=60.66 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=26.5
Q ss_pred cCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 61 EGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 61 ~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+|.+++..++|+||||+|||++|..++..+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467777888999999999999999999875
No 222
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.76 E-value=0.0074 Score=56.27 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.|++|+||||+++.+++.++
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346788999999999999999999998
No 223
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.75 E-value=0.059 Score=52.54 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=24.5
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|+||.|+||||+++.++..+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4567889999999999999999997764
No 224
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.72 E-value=0.0059 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999998763
No 225
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.70 E-value=0.028 Score=41.85 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=52.2
Q ss_pred HHHHHHhhcCC-ccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 367 ILDIRCQEEDV-EMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 367 iL~~~~~~~~~-~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
.+..+++..|+ .+++++...|.+++. |++..+++.|..+|...|++.|+.+||+-++...
T Consensus 6 ~i~~iLk~~G~~~~~~~v~~~L~e~~~----ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 6 VIMSILKELNVQEYEPRVVNQLLEFTF----RYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHTTCCCBCTHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 44555666777 799999999999985 9999999999999999999999999999988653
No 226
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.69 E-value=0.0058 Score=55.53 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=22.8
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+++.+.|.||+|+||||+++.++..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 357889999999999999999998763
No 227
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.69 E-value=0.006 Score=61.16 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=26.6
Q ss_pred cCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 61 EGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 61 ~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.|.+++..++|+||||+|||++|..++..+
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 477788899999999999999999998765
No 228
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.69 E-value=0.0078 Score=63.09 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=44.7
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceeccc------------CCHHH-HHHHHHHHHHcccccCce
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFSLE------------MSKTE-ALMQAFRKAIGVRIKEEA 131 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~~e------------~~~~~-~l~~~~~~a~~~~~~~~~ 131 (466)
++.++++.||+|+||||++++++..+......+.+.+....... ..... .+.++++.+... .|.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~---~PD 335 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQ---RPD 335 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGG---CCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhcc---CCC
Confidence 34679999999999999999999888654444444443211110 01111 344455444433 488
Q ss_pred EEEEcceee
Q 012326 132 EVIEGEVVE 140 (466)
Q Consensus 132 ii~~dEid~ 140 (466)
.++.+|+..
T Consensus 336 ~iivgEir~ 344 (511)
T 2oap_1 336 YIIVGEVRG 344 (511)
T ss_dssp EEEESCCCS
T ss_pred eEEeCCcCH
Confidence 888888654
No 229
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.67 E-value=0.0074 Score=55.34 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=23.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
..+.|.|++|+||||+++.+++ ++ .+++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg--~~~i 32 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LG--INVI 32 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TT--CEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cC--CEEE
Confidence 5788999999999999999998 76 4444
No 230
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.65 E-value=0.0054 Score=58.72 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=25.3
Q ss_pred CCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 62 ~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
|..++..++|+||||+|||+|++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 55667899999999999999999998755
No 231
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.63 E-value=0.0059 Score=59.83 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=26.6
Q ss_pred cCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 61 EGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 61 ~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.|.+++..++|+||||+|||++|..++..+
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 577778889999999999999999999764
No 232
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.61 E-value=0.007 Score=57.09 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=23.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..+.|.|+||+||||+|+.+++.++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5788999999999999999999988
No 233
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.61 E-value=0.0056 Score=55.94 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.++|.||||+|||++|..+++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 57899999999999999999998763
No 234
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.58 E-value=0.012 Score=57.55 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=30.4
Q ss_pred HHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 55 ILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 55 ~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+++.+.-...++..+.|+||+|+|||||++.++..+
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 355555567778899999999999999999999887
No 235
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.57 E-value=0.012 Score=63.46 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHH-HHHc
Q 012326 45 QLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGM-AKSL 90 (466)
Q Consensus 45 ~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~i-a~~l 90 (466)
.+..++++..++. .....|+.||||||||+++-.+ ++.+
T Consensus 191 N~~Q~~AV~~al~-------~~~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 191 DTSQKEAVLFALS-------QKELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp CHHHHHHHHHHHH-------CSSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc-------CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 5666667655442 1246789999999999765544 4444
No 236
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.52 E-value=0.017 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHc
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
++..+.|.||+|+||||+++.++..+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999999876
No 237
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.51 E-value=0.0071 Score=58.33 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
..++|.|+||+||||+|+.+++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999999864
No 238
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.48 E-value=0.0087 Score=60.55 Aligned_cols=26 Identities=27% Similarity=0.667 Sum_probs=23.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+.++|.||+|+|||++|..+|+.++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35788999999999999999999987
No 239
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.47 E-value=0.0092 Score=59.08 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=23.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++|.||+|+|||++|..+|+.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4788999999999999999999987
No 240
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.44 E-value=0.019 Score=55.52 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||+|+||||+++.++..+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346777999999999999999999885
No 241
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.44 E-value=0.0068 Score=55.10 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHc
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+..+.|+|+||+||||+++.+++.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4678899999999999999999876
No 242
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.43 E-value=0.008 Score=59.82 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=27.6
Q ss_pred HcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 60 KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 60 ~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..|.+++..+.|+||||+|||+|++.++..+.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45667788899999999999999999998763
No 243
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.42 E-value=0.0093 Score=58.42 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.2
Q ss_pred cCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 61 EGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 61 ~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.|.+++ .++++||||+|||+|+..++..+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 567766 78999999999999998887654
No 244
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.40 E-value=0.018 Score=50.53 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=27.7
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
++.+.-...++..+.|.||.|+|||||++.++..+
T Consensus 23 l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 23 EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33333344566788899999999999999999987
No 245
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.31 E-value=0.0088 Score=54.41 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||+|+||||+++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346788999999999999999999875
No 246
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.31 E-value=0.01 Score=55.24 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+..+.|.||||+||||+++.+++.++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 356788999999999999999999886
No 247
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.29 E-value=0.0082 Score=61.19 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|+|+||+||||+|+.+++.++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47888999999999999999999886
No 248
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.28 E-value=0.015 Score=69.49 Aligned_cols=87 Identities=17% Similarity=0.204 Sum_probs=52.9
Q ss_pred HHHHc--CCCCCceEEEecCCCCChHHHHHHHHHHcCC-CCceEeeeccceeccc----CC---------HHHHHHHHHH
Q 012326 57 QMIKE--GKIAGRAVLIAGQPGTGKTAIAMGMAKSLGL-ETPFAMISGSEIFSLE----MS---------KTEALMQAFR 120 (466)
Q Consensus 57 ~~l~~--~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~-~~p~~~i~~~~~~~~e----~~---------~~~~l~~~~~ 120 (466)
+.+.. |..++..++|+|+||+|||+||..+|..+.. ..++.+++..+-.+.. .+ ....+.+++.
T Consensus 721 D~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~ 800 (2050)
T 3cmu_A 721 DIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE 800 (2050)
T ss_dssp HHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHH
T ss_pred HHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHH
Confidence 44443 7888899999999999999999999987653 2345544443322211 00 0001223332
Q ss_pred HHHcc-cccCceEEEEcceeeeec
Q 012326 121 KAIGV-RIKEEAEVIEGEVVEVQI 143 (466)
Q Consensus 121 ~a~~~-~~~~~~ii~~dEid~~~~ 143 (466)
.+... +...|++++.|.+..+..
T Consensus 801 ~~r~l~~~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 801 ICDALARSGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGGGCCC
T ss_pred HHHHHhhccCCCEEEEcchhhhcc
Confidence 22221 113589999999999875
No 249
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.26 E-value=0.14 Score=46.38 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHc
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
...+++|+++|.|||+.|.++|...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA 52 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARA 52 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3688899999999999999998643
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.20 E-value=0.0097 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.2
Q ss_pred CCceEEEecCCCCChHHHHHHH
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGM 86 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~i 86 (466)
++..+.|.||+|+||||+++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4567889999999999999974
No 251
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.19 E-value=0.013 Score=55.77 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=25.0
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 63 KIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 63 ~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++..++|+||+|+||||+++.++..+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 34567889999999999999999998773
No 252
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.19 E-value=0.019 Score=56.13 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=24.1
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||+|+||||+++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4456778999999999999999998874
No 253
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.17 E-value=0.015 Score=52.99 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
..|.|.||+|+|||++++.+|+.++ .||+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg--~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN--IPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT--CCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC--cCEE
Confidence 4688999999999999999999999 5665
No 254
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.17 E-value=0.0084 Score=60.81 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=26.3
Q ss_pred HcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 60 KEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 60 ~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
..|..++..+.|+||||+|||+|++.++-..
T Consensus 172 gGGI~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 172 GGGVETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCcCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 3677778899999999999999999877544
No 255
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.16 E-value=0.012 Score=54.26 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.4
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.++..+.|.||+|+||||+++.++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 346788899999999999999999866
No 256
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.15 E-value=0.013 Score=53.37 Aligned_cols=27 Identities=22% Similarity=0.540 Sum_probs=23.7
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||+|+||||+++.++..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456788999999999999999998773
No 257
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.13 E-value=0.012 Score=56.57 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..+.|+|+||+||||+|+.++ .++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHT
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCC
Confidence 568899999999999999999 566
No 258
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.13 E-value=0.1 Score=55.42 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=24.4
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.++||.|+||||+++.++..+.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 4567888999999999999999987764
No 259
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.10 E-value=0.11 Score=55.11 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=28.1
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.+.-...++..+.|.||.|+||||+++.++..+.
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 333333445678899999999999999999998764
No 260
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.10 E-value=0.06 Score=62.79 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=25.1
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|+||+|+||||+++.+.+.+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 4578899999999999999999998875
No 261
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.10 E-value=0.031 Score=54.89 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..+-|.||+|+||||+++.++..+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4677899999999999999999886
No 262
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.08 E-value=0.014 Score=54.04 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=24.1
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||+|+|||||++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567888999999999999999998774
No 263
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.021 Score=58.37 Aligned_cols=78 Identities=13% Similarity=0.178 Sum_probs=54.4
Q ss_pred cCCCCeEEEEccCCCcccccccccccccccccCCceeeec-CCChhHHhHHHhhhh----cch---hhHHHHhhhccccc
Q 012326 184 VQSGDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQ-CPDGELQKRKEVVHC----VTL---HEIDVINSRTQGFL 255 (466)
Q Consensus 184 ~~~~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~-~p~~~~~~r~~~~~~----~~l---~~ld~~~~~~~~~~ 255 (466)
+.....+.|.++||+++.+|+++.||+|||. ..++| +| +...|..++.. +.+ -+++.++..+.||+
T Consensus 306 ~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~----~I~~p~lP--d~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~s 379 (428)
T 4b4t_K 306 FDQSTNVKVIMATNRADTLDPALLRPGRLDR----KIEFPSLR--DRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLS 379 (428)
T ss_dssp SCSSCSEEEEEEESCSSSCCHHHHSSSSEEE----EEECCSSC--CHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCC
T ss_pred CCCCCCEEEEEecCChhhcChhhhcCCcceE----EEEcCCCC--CHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCC
Confidence 3334457888999999999999999999998 45554 56 44566666632 222 26788889999987
Q ss_pred ccccCCccchhHHHHHHH
Q 012326 256 ALFTGDTGEIRAEVREQI 273 (466)
Q Consensus 256 ~l~~~~~~ei~~~~r~~i 273 (466)
+ .+|..-++++.
T Consensus 380 g------adi~~l~~eA~ 391 (428)
T 4b4t_K 380 G------AVIAAIMQEAG 391 (428)
T ss_dssp H------HHHHHHHHHHH
T ss_pred H------HHHHHHHHHHH
Confidence 6 44444454443
No 264
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.022 Score=50.47 Aligned_cols=45 Identities=20% Similarity=0.143 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHcCC-CCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 46 LPARKAAGVILQMIKEGK-IAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 46 ~~~k~~l~~~l~~l~~~~-~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
...++.+...+.....+. .+...+++.|++|+|||+++.++...-
T Consensus 27 ~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 27 SQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp HHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444445544444333322 234689999999999999999998643
No 265
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.98 E-value=0.22 Score=52.83 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=24.6
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+||||+++.++..+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 4567889999999999999999998764
No 266
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.96 E-value=0.17 Score=53.83 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=24.5
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+-+.||.|+||||+++.++..+.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4567889999999999999999987764
No 267
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.95 E-value=0.015 Score=54.40 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=23.7
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+-|.||.|+||||+++.++..++
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445678999999999999999999886
No 268
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.93 E-value=0.0062 Score=55.38 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHcC
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+.|.|++|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999885
No 269
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.83 E-value=0.016 Score=52.32 Aligned_cols=24 Identities=38% Similarity=0.700 Sum_probs=21.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
..+.|+||+|+||||+++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 467899999999999999999877
No 270
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.83 E-value=0.011 Score=54.89 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=17.0
Q ss_pred CCceEEEecCCCCChHHHHHHHH-HHc
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMA-KSL 90 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia-~~l 90 (466)
++..+.|.||+|+||||+++.++ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45778899999999999999999 765
No 271
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.79 E-value=0.072 Score=54.88 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=25.4
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
++.+. ....++.++|.||+|+|||++++.++...
T Consensus 142 ID~L~-pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 142 VDLLA-PYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHS-CEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHh-hhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 44443 22335678999999999999999888754
No 272
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.78 E-value=0.017 Score=51.80 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=26.9
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCCceEeeeccceec
Q 012326 69 VLIAGQPGTGKTAIAMGMAKSLGLETPFAMISGSEIFS 106 (466)
Q Consensus 69 iLL~GppGtGKT~lA~~ia~~l~~~~p~~~i~~~~~~~ 106 (466)
+|++|++|+|||++|..++.. + .|..++.....+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~--~~~~yiaT~~~~d 36 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A--PQVLYIATSQILD 36 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C--SSEEEEECCCC--
T ss_pred EEEECCCCCcHHHHHHHHHhc-C--CCeEEEecCCCCC
Confidence 689999999999999999977 5 5666666655443
No 273
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.77 E-value=0.04 Score=54.77 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHc
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
...+.|+|+||+||||++.+++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3678899999999999999999876
No 274
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.76 E-value=0.048 Score=53.03 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||.|+||||+++.+|..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999998763
No 275
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.71 E-value=0.14 Score=54.67 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.1
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 63 KIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 63 ~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++..+.+.||.|+||||+++.++..+.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 34578899999999999999999998774
No 276
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.71 E-value=0.024 Score=60.62 Aligned_cols=35 Identities=34% Similarity=0.676 Sum_probs=29.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHc---CCCCceEeeec
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSL---GLETPFAMISG 101 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l---~~~~p~~~i~~ 101 (466)
.+..|+|+|+||+||||+|+.+++.+ + .+++.+.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G--~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG--IPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEech
Confidence 34779999999999999999999988 6 56666543
No 277
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.70 E-value=0.018 Score=53.63 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=56.5
Q ss_pred cceeeeeccccccH------HHHHHHHHHhhhcCCCe-EEEEeccceeE----eec--ccccCCCCCChhHHhhhhhhcc
Q 012326 290 PGVLFIDEVHMLDV------ECFSFLNRALENEMAPI-LVVATNRGITR----IRG--TNYKSAHGIPMDLLDRLLIIST 356 (466)
Q Consensus 290 ~~vl~iDEi~~l~~------~~~~~L~~~le~~~~~i-iil~tn~~~~~----~~~--~~~~~~~~l~~~llsR~~~i~~ 356 (466)
+.+++|||+-+.+. ..+..+...++. .+ ++.++|-.... +.. +...-...+|+.+++++.-+.+
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~l 161 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVL 161 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEE
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEE
Confidence 67999999887522 123333333332 32 55566643111 100 0111126889999999977888
Q ss_pred CCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCH
Q 012326 357 KPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSL 396 (466)
Q Consensus 357 ~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~ 396 (466)
-.++++++.+.|. ...+...+.+-..+..+-..+++
T Consensus 162 vD~~p~~l~~rl~----~g~vy~~~~~~~a~~~~f~~~nl 197 (228)
T 2r8r_A 162 IDLPPRELLERLR----DGKVYVPEQARAAIDAFFTQTNL 197 (228)
T ss_dssp BCCCHHHHHHHHH----TTCCCCTTCCHHHHHHHCCHHHH
T ss_pred ecCCHHHHHHHHH----CCCccChhHHHHHHHhhhchhhH
Confidence 8889988766654 34454555555556665533443
No 278
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.67 E-value=0.022 Score=53.20 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=23.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
.+-|.||||+||||+|+.+++.++ ++++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g--~~~i 37 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG--IPQI 37 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--CCEE
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC--CCee
Confidence 456889999999999999999998 4443
No 279
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.62 E-value=0.018 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=21.7
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
++++||.|++|+|||++|..+.+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 58999999999999999999987
No 280
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.54 E-value=0.02 Score=57.17 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+++.||+|+||||++++++..+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 345789999999999999999998774
No 281
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.52 E-value=0.047 Score=55.84 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++++||+|+||||++..+|..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57888999999999999999997663
No 282
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.47 E-value=0.051 Score=50.13 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=25.4
Q ss_pred cceeeeeccccccHHHHHHHHHHhhhcCCCeEEEE
Q 012326 290 PGVLFIDEVHMLDVECFSFLNRALENEMAPILVVA 324 (466)
Q Consensus 290 ~~vl~iDEi~~l~~~~~~~L~~~le~~~~~iiil~ 324 (466)
..+++|||++.++++....+.++. +...|+++..
T Consensus 102 ~dvV~IDEaQFf~~~~v~~l~~la-~~gi~Vi~~G 135 (219)
T 3e2i_A 102 VDVIGIDEVQFFDDEIVSIVEKLS-ADGHRVIVAG 135 (219)
T ss_dssp CSEEEECCGGGSCTHHHHHHHHHH-HTTCEEEEEE
T ss_pred CCEEEEechhcCCHHHHHHHHHHH-HCCCEEEEee
Confidence 459999999999998888888776 4444555433
No 283
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.42 E-value=0.022 Score=57.11 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=24.5
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..++|+||+|+||||++++++..+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4557889999999999999999998774
No 284
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.41 E-value=0.064 Score=53.47 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.7
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||.|+||||+++.+|..+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 356788999999999999999998764
No 285
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.40 E-value=0.024 Score=55.37 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|+||+|+||||++..+|..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 56788999999999999999998763
No 286
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.38 E-value=0.023 Score=53.23 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=24.2
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 63 KIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 63 ~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+.+.-|.|.|++|+||||+++.+++.+.
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34457889999999999999999998775
No 287
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.37 E-value=0.025 Score=52.13 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=24.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
.+.-|.|.|++|+||||+++.+++.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998853
No 288
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.37 E-value=0.057 Score=55.24 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=22.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHc
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+..++++|+||+||||++..+|..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999866
No 289
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.35 E-value=0.14 Score=59.82 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=24.7
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+-|+||+|+||||+++.+.+.+.
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 4567888999999999999999998775
No 290
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.34 E-value=0.028 Score=54.77 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=23.8
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||+|+||||+++.+|..+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 356888999999999999999998774
No 291
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.31 E-value=0.057 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.7
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||+|+||||+++.+|..+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457888999999999999999998764
No 292
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.14 E-value=0.027 Score=54.65 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..++|+||+|+||||++..+|..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998763
No 293
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.14 E-value=0.033 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+.+.|.||+|+||||+++.++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 578899999999999999999865
No 294
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.14 E-value=0.053 Score=49.27 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..+++.|++|+|||+++.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999998764
No 295
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.13 E-value=0.03 Score=52.00 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=25.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
..|.|.|++|||||++|+.+|+.++ .||+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg--~~~~ 43 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELG--IHFY 43 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT--CEEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcC--CcEE
Confidence 4677899999999999999999998 5554
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.13 E-value=0.031 Score=49.63 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=22.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.+.|.|++|+|||+++..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 5788999999999999999998763
No 297
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.13 E-value=0.028 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..+.|.|++|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36788999999999999999999984
No 298
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.11 E-value=0.045 Score=53.23 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=23.5
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+-|.||+|+||||+++.++..+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346777999999999999999999875
No 299
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.09 E-value=0.043 Score=58.87 Aligned_cols=38 Identities=32% Similarity=0.414 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 45 QLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 45 ~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.+..++++..++ . .+..++.||||||||+++..++..+
T Consensus 182 n~~Q~~av~~~l---~-----~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 182 NHSQVYAVKTVL---Q-----RPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CHHHHHHHHHHH---T-----CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh---c-----CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 455555554433 1 2578899999999999888777655
No 300
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.06 E-value=0.034 Score=58.07 Aligned_cols=27 Identities=4% Similarity=0.234 Sum_probs=24.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
+..|+|.|++|+||||+|+++|+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999984
No 301
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.05 E-value=0.031 Score=55.82 Aligned_cols=27 Identities=26% Similarity=0.603 Sum_probs=24.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..++|.||+|+||||++++++..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 457899999999999999999998775
No 302
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.02 E-value=0.031 Score=47.60 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
..+++.|++|+|||++++++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 303
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.96 E-value=0.071 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=23.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++++|+||+||||++..+|..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 57889999999999999999998664
No 304
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.93 E-value=0.03 Score=58.78 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=23.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++|+|.||+||||+|+.+++.++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6788999999999999999999885
No 305
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.84 E-value=0.034 Score=56.63 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
.++..+++.||+|+||||++++++..+..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 34467899999999999999999998853
No 306
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.74 E-value=0.033 Score=51.91 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=20.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.+.-|.|.||+|+||||+++.+++.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999999874
No 307
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.71 E-value=0.082 Score=48.18 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..+++.|++|+|||+++.+++....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 6888999999999999999998753
No 308
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.64 E-value=0.062 Score=53.06 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=26.8
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
++.+.-...++..+.|.||||+||||+.++++..+
T Consensus 45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 44444334455778899999999999999999765
No 309
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.59 E-value=0.021 Score=55.23 Aligned_cols=39 Identities=13% Similarity=0.288 Sum_probs=24.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCC-CCceEeeecccee
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGL-ETPFAMISGSEIF 105 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~-~~p~~~i~~~~~~ 105 (466)
..+.|.||+|+||||+|+.+++.++. ...+..+....++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 46789999999999999999987751 1123344544444
No 310
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.59 E-value=0.043 Score=50.72 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=24.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
+.-+.|.|++|+||||+++.+++.++.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 467889999999999999999999974
No 311
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.56 E-value=0.045 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHc
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
...+++.|++|+|||+++.++....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998754
No 312
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.56 E-value=0.019 Score=54.33 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=23.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..|.|.|++|+||||+++.+++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46788999999999999999999884
No 313
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.53 E-value=0.043 Score=47.00 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||++++++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999863
No 314
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.45 E-value=0.046 Score=46.57 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|+||+|||+++.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999998863
No 315
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.44 E-value=0.24 Score=48.37 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=49.9
Q ss_pred CeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhh--------cchhhHHHHhhhccccccccc
Q 012326 188 DVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHC--------VTLHEIDVINSRTQGFLALFT 259 (466)
Q Consensus 188 d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~--------~~l~~ld~~~~~~~~~~~l~~ 259 (466)
..+.|..+||.++.+++++.| ||+. ..+++.|+. ..|..++.. ++..+++.+...+.||++
T Consensus 148 ~~v~vI~atn~~~~ld~al~r--Rf~~----~i~i~~P~~--~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sg--- 216 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRR--RFEK----RIYIPLPEP--HARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSG--- 216 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHH--TCCE----EEECCCCCH--HHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCH---
T ss_pred CCEEEEEecCCcccCCHHHHh--hcCe----EEEeCCcCH--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCH---
Confidence 447788889999999999877 6766 567788854 455555532 244467788888888765
Q ss_pred CCccchhHHHHHHHHHHH
Q 012326 260 GDTGEIRAEVREQIDTKV 277 (466)
Q Consensus 260 ~~~~ei~~~~r~~i~~~~ 277 (466)
.++..-++++....+
T Consensus 217 ---adl~~l~~~A~~~a~ 231 (322)
T 1xwi_A 217 ---ADISIIVRDALMQPV 231 (322)
T ss_dssp ---HHHHHHHHHHHTHHH
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 344444444444333
No 316
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.43 E-value=0.054 Score=47.79 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
...+|+||.|+|||+++.+|.-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4678999999999999999998775
No 317
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.43 E-value=0.042 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
-.+.|.|++|+|||+|.++++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 367899999999999999998743
No 318
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.41 E-value=0.04 Score=51.51 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=23.9
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+|||||++.++..+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3467888999999999999999997664
No 319
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.40 E-value=0.04 Score=49.17 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
-.+.|.|++|+|||+|+++++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 467899999999999999998754
No 320
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.36 E-value=0.037 Score=51.29 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||.|+|||||++.++..+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456788999999999999999997653
No 321
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.34 E-value=0.045 Score=46.53 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||++++++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 322
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.34 E-value=0.041 Score=51.46 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.3
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.++..+.|.||.|+|||||++.++..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356788899999999999999998655
No 323
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.30 E-value=0.098 Score=54.26 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||+|+||||+++.|+..+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 356788999999999999999998763
No 324
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.28 E-value=0.045 Score=56.52 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=23.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..++|+|.||+||||+++.+++.++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6889999999999999999999875
No 325
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.25 E-value=0.07 Score=58.87 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+..++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999888777655
No 326
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.24 E-value=0.051 Score=46.53 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||++.+++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998853
No 327
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.24 E-value=0.038 Score=48.84 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=19.2
Q ss_pred eEEEecCCCCChHHHHHHHHH
Q 012326 68 AVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~ 88 (466)
.++|.|++|+|||+|+++++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999875
No 328
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.23 E-value=0.051 Score=46.33 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
..+++.|++|+|||++++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999998863
No 329
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.23 E-value=0.051 Score=49.83 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHH
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
++..+.|.||.|+|||||++.++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3467889999999999999999976
No 330
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.23 E-value=0.053 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.-|.|.|++|+||||+++.+++.+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999874
No 331
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.21 E-value=0.046 Score=47.34 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.8
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
..+.|.|+||+|||++.++++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999974
No 332
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.18 E-value=0.096 Score=49.63 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHH
Q 012326 47 PARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 47 ~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
...+.+...+..+.........+++.|++|+|||+|..++..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 20 ATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 344455555555544333346899999999999999999874
No 333
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.18 E-value=0.05 Score=46.98 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.7
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|+||+|||+|.+++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4789999999999999999874
No 334
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.17 E-value=0.054 Score=46.45 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
-.+++.|++|+|||++.+++...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999998643
No 335
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.17 E-value=0.054 Score=46.98 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||++.+++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999999753
No 336
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.15 E-value=0.25 Score=51.09 Aligned_cols=61 Identities=23% Similarity=0.417 Sum_probs=42.8
Q ss_pred eEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhh----cch---hhHHHHhhhccccc
Q 012326 189 VIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHC----VTL---HEIDVINSRTQGFL 255 (466)
Q Consensus 189 ~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~----~~l---~~ld~~~~~~~~~~ 255 (466)
.+.|..+||.++.+++++.|++|||. ...++.| +...|..++.. ..+ -+++.+...+.|+.
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~----~i~i~~P--d~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDK----KIVVDPP--DMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCE----EEECCCC--CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCccee----EeecCCC--CHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCc
Confidence 47788899999999999999999998 5566666 45566666532 111 13566666677765
No 337
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.14 E-value=0.053 Score=53.16 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+++.++++||+|+||||++..+|..+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999998764
No 338
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.08 E-value=0.049 Score=57.09 Aligned_cols=31 Identities=35% Similarity=0.629 Sum_probs=25.6
Q ss_pred HHHHHc-CCCCCceEEEecCCCCChHHHHHHH
Q 012326 56 LQMIKE-GKIAGRAVLIAGQPGTGKTAIAMGM 86 (466)
Q Consensus 56 l~~l~~-~~~~~~~iLL~GppGtGKT~lA~~i 86 (466)
++.+.. +..++..++|.||+|+|||||++.+
T Consensus 28 Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 28 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 444555 5667889999999999999999994
No 339
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.02 E-value=0.063 Score=49.84 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.-+.|.|++|+||||+++.+++.+.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46788899999999999999999875
No 340
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.01 E-value=0.058 Score=46.31 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||++.+++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57899999999999999999864
No 341
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.99 E-value=0.11 Score=49.05 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHH
Q 012326 47 PARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 47 ~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
...+.+...+..+.......-.+++.|++|+|||+++.++..
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 17 ATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 344455555555555444447899999999999999999885
No 342
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.97 E-value=0.059 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
..+++.|++|+|||+++.++...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999998863
No 343
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.97 E-value=0.055 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=19.9
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||+++.++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999885
No 344
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.95 E-value=0.047 Score=57.23 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=27.5
Q ss_pred HHcCCCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 59 IKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 59 l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+..+..++..++|.||||+|||+|++.++...
T Consensus 274 L~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 274 CGGGFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred hCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34567778899999999999999999999765
No 345
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.92 E-value=0.049 Score=50.18 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||.|+||||+++.++..+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457788999999999999999987653
No 346
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.88 E-value=0.051 Score=50.96 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=23.9
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+|||||++.++..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567888999999999999999997663
No 347
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.88 E-value=0.062 Score=45.89 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.5
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~ 89 (466)
.+++.|++|+|||+++.++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999753
No 348
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.87 E-value=0.06 Score=46.19 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.8
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||++++++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999875
No 349
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.87 E-value=0.06 Score=50.72 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHH
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
++..+.|.||.|+|||||++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4577889999999999999999975
No 350
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.87 E-value=0.052 Score=51.61 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+|||||++.++..+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456788999999999999999997664
No 351
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.86 E-value=0.063 Score=45.95 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=20.1
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||++..++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999999986
No 352
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.86 E-value=0.063 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=20.1
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||++.+++..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999986
No 353
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.85 E-value=0.059 Score=46.29 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=18.9
Q ss_pred eEEEecCCCCChHHHHHHHHH
Q 012326 68 AVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~ 88 (466)
.+++.|+||+|||++++++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999863
No 354
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.84 E-value=0.037 Score=58.44 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=24.4
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.|++|+||||++++++..+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 457889999999999999999999885
No 355
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.80 E-value=0.055 Score=51.67 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHcC
Q 012326 68 AVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.|.||+|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 678999999999999999998774
No 356
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.78 E-value=0.066 Score=51.01 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.9
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHH
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
.++..+.|.||.|+|||||++.++..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678889999999999999999975
No 357
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.77 E-value=0.44 Score=55.38 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.6
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+-|+||+|+||||+++.++..+.
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4568889999999999999999987764
No 358
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.75 E-value=0.054 Score=50.99 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=23.9
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+|||||++.++..+.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3467888999999999999999987664
No 359
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.74 E-value=0.056 Score=50.24 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=23.9
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+||||+.+.++..+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3467888999999999999999997663
No 360
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=92.72 E-value=0.47 Score=35.86 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHh
Q 012326 357 KPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLD 432 (466)
Q Consensus 357 ~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~~~ 432 (466)
++|+.++-.+||+.+++...+. ++.-++.|+..+.+-+...+-++++.|+..|..++...|+.+|+..++.-...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 3578889999999888765432 22237888888865677888889999998888888899999999999876543
No 361
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.72 E-value=0.057 Score=51.26 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.6
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.++..+.|.||.|+|||||++.++..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456788999999999999999999755
No 362
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.71 E-value=0.066 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||+|++++..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999986
No 363
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.70 E-value=0.033 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+.+.|+|++|+||||+++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999998874
No 364
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.69 E-value=0.056 Score=51.19 Aligned_cols=27 Identities=30% Similarity=0.462 Sum_probs=23.4
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||.|+|||||.+.++..+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456788999999999999999997663
No 365
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.66 E-value=0.081 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.7
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
...+++.|++|+|||++..++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999874
No 366
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=92.64 E-value=0.29 Score=38.41 Aligned_cols=57 Identities=12% Similarity=-0.005 Sum_probs=47.1
Q ss_pred HHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 012326 367 ILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVY 427 (466)
Q Consensus 367 iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~ 427 (466)
|.+..++..++.++++++..|+++.. +++.++...+..+|+..|++.|+.+||.-+.
T Consensus 21 i~~e~~~~~g~~vs~~~i~aL~e~~~----~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~ 77 (90)
T 3v9r_A 21 RLQQVLSSEDIKYTPRFINSLLELAY----LQLGEMGSDLQAFARHAGRGVVNKSDLMLYL 77 (90)
T ss_dssp HHHHHSCSSCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSEECHHHHHHHT
T ss_pred HHHHHHHhcCceeCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 33443333468999999999999884 8889999999999999999999999998765
No 367
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.64 E-value=0.058 Score=51.73 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+|||||++.++..+.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3457788999999999999999997664
No 368
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.62 E-value=0.058 Score=46.20 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=18.7
Q ss_pred ceEEEecCCCCChHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMA 87 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia 87 (466)
-.+++.|+||+|||++.+++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999875
No 369
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.59 E-value=0.072 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.579 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|+.++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999853
No 370
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.58 E-value=0.064 Score=46.92 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=21.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
+..+.|.|+||+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 367899999999999999999853
No 371
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.58 E-value=0.059 Score=50.44 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||.|+|||||.+.++..+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456788999999999999999997653
No 372
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=92.57 E-value=0.41 Score=38.82 Aligned_cols=60 Identities=8% Similarity=0.144 Sum_probs=50.0
Q ss_pred HHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 365 RKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 365 ~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
.+|++......+..++++++..|.++.. +++..+...+..+|+..|+++|+.+||+-+..
T Consensus 26 ~rI~~~~g~~~~~~vs~~~i~aL~E~~~----~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 26 GCLCQDVAEDKGVLFSKQTVAAISEITF----RQCENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp HHHHHHHHHHHTCEECHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHhhhcCCccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 4455554444568999999999999884 89999999999999999999999999998764
No 373
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.57 E-value=0.072 Score=45.76 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
...+++.|++|+|||++..++..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999999975
No 374
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.57 E-value=0.06 Score=51.25 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+|||||++.++..+.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4567888999999999999999997663
No 375
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.53 E-value=0.062 Score=51.34 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=24.1
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+|||||++.++..+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567888999999999999999997664
No 376
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.52 E-value=0.062 Score=53.50 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..+.|.||+|+|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888999999999999999999885
No 377
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.50 E-value=0.09 Score=58.06 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=19.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+..++.||||||||+++..+...+
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999877766544
No 378
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.50 E-value=0.062 Score=50.68 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+|||||++.++..+.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3456788999999999999999987663
No 379
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.49 E-value=0.16 Score=50.06 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
..+..+.+.|+||+||||++.+++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345788899999999999999998765
No 380
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.49 E-value=0.074 Score=45.98 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||++++++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999864
No 381
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.48 E-value=0.065 Score=53.39 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=23.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.-+.|.||.||||||+.+.++....
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 456788999999999999999997664
No 382
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.46 E-value=0.072 Score=46.16 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.0
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|+||+|||+|++++..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 383
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.45 E-value=0.07 Score=46.15 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.1
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||+|+.++..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999999985
No 384
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.45 E-value=0.067 Score=47.00 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.1
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
..++|.|++|+|||++.++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999975
No 385
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=92.45 E-value=0.39 Score=39.22 Aligned_cols=60 Identities=7% Similarity=0.174 Sum_probs=51.0
Q ss_pred HHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 365 RKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 365 ~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
.+|++......++.++++++..|+++.. +++.++...+..+|+-.|++.|+.+||.-+..
T Consensus 34 ~rIvke~gaer~~~vS~~ai~aL~El~~----~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 34 GCLCEEVALDKEMQFSKQTIAAISELTF----RQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHTCCBCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 4566666666689999999999999884 78899999999999999999999999987753
No 386
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.44 E-value=0.068 Score=46.32 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.7
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||+|++++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999863
No 387
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.42 E-value=0.064 Score=51.12 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=23.9
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+-|.||.|+|||||++.++..+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3467788999999999999999997664
No 388
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.41 E-value=0.072 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=20.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
..+++.|++|+|||+|.+++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999864
No 389
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.41 E-value=0.078 Score=49.71 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..+.|.||.|+||||+++.++..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5778999999999999999997663
No 390
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.41 E-value=0.17 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHc
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
++.++|+|+||+||||++..+|..+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999766
No 391
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.40 E-value=0.067 Score=50.67 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+|||||++.++..+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567888999999999999999987653
No 392
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=92.40 E-value=0.13 Score=58.03 Aligned_cols=43 Identities=30% Similarity=0.350 Sum_probs=33.9
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCCCCceEEEecCCCCChHHHHHHHHH
Q 012326 42 MVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 42 lvG~~~~k~~l~~~l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
.+|++...+.+...+. ... +.+.+.|+||+|+|||++|+.+++
T Consensus 130 ~VGRe~eLeeL~elL~---~~d-~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALL---ELR-PAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHH---HCC-SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHh---ccC-CCeEEEEEcCCCccHHHHHHHHHH
Confidence 3999999888866553 211 247899999999999999999885
No 393
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.39 E-value=0.077 Score=46.75 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+++.+++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57899999999999999999864
No 394
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.35 E-value=0.16 Score=51.96 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=29.8
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
++.+ -...++.-+.|.||+|+|||||++.++.....
T Consensus 148 ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 148 INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 5555 55566788899999999999999999998853
No 395
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.35 E-value=0.07 Score=46.53 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=20.0
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||+|.+++..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999999875
No 396
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.31 E-value=0.076 Score=52.84 Aligned_cols=28 Identities=32% Similarity=0.322 Sum_probs=23.7
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+|||||.+.++....
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3456788999999999999999997653
No 397
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.30 E-value=0.08 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|++++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999998863
No 398
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.29 E-value=0.075 Score=46.75 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|++++...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57889999999999999999864
No 399
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.28 E-value=0.082 Score=45.93 Aligned_cols=23 Identities=22% Similarity=0.575 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||++++++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57899999999999999998863
No 400
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.27 E-value=0.073 Score=56.47 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.6
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|.|+||+||||+|+++++.++
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 36788999999999999999999886
No 401
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.26 E-value=0.082 Score=46.07 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
..+++.|++|+|||+|++++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 68999999999999999998863
No 402
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.24 E-value=0.069 Score=51.27 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=23.9
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+|||||++.++..+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3567788999999999999999997663
No 403
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.23 E-value=0.071 Score=50.74 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=23.6
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
.++..+.|.||.|+|||||++.++..+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3457788999999999999999987653
No 404
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.22 E-value=0.27 Score=47.30 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=42.8
Q ss_pred CCeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcc-------hhhHHHHhhhcccccc
Q 012326 187 GDVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVT-------LHEIDVINSRTQGFLA 256 (466)
Q Consensus 187 ~d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~-------l~~ld~~~~~~~~~~~ 256 (466)
..-+.|..+||.++.+++++.|++||+. ..+++.|+. ..|..++.... -.+++.+...+.||.+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~----~i~i~~p~~--~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg 222 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQ----LIYIPLPDE--KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 222 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCE----EEECCCCCH--HHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCH
T ss_pred CCCEEEEEecCCccccChHHhcCCccce----EEecCCcCH--HHHHHHHHHHHccCCCCccchHHHHHHHcCCCCH
Confidence 3447788899999999999999999987 567777744 45655553211 1234555556666644
No 405
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.21 E-value=0.079 Score=52.80 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||.|+||||+.+.++....
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 456788999999999999999997663
No 406
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.21 E-value=0.08 Score=52.81 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||.|+||||+.+.++....
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 456788999999999999999997663
No 407
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.21 E-value=0.078 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|++++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999998763
No 408
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.20 E-value=0.084 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|+.++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999874
No 409
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.19 E-value=0.085 Score=46.09 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
.-.+++.|++|+|||++++++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999999864
No 410
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.17 E-value=0.071 Score=50.39 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||.|+|||||.+.++..+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456788999999999999999997663
No 411
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.17 E-value=0.22 Score=49.29 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHc
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
...+.|.|+||+|||||.+++...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999765
No 412
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.14 E-value=0.087 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|..++...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57899999999999999998763
No 413
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.12 E-value=0.083 Score=53.04 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.-+.|.||.|+||||+.+.++....
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 456788999999999999999997664
No 414
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.05 E-value=0.086 Score=52.81 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||.|+|||||.+.+|....
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 456788999999999999999997663
No 415
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.04 E-value=0.092 Score=46.35 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.6
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
...+++.|++|+|||++..++..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999874
No 416
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.00 E-value=0.087 Score=46.59 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
.-.++|.|++|+|||+|++++...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 358899999999999999988763
No 417
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.98 E-value=0.087 Score=52.78 Aligned_cols=27 Identities=26% Similarity=0.339 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||.|+|||||.+.++....
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 456788999999999999999997663
No 418
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.96 E-value=0.075 Score=46.59 Aligned_cols=21 Identities=19% Similarity=0.537 Sum_probs=19.1
Q ss_pred eEEEecCCCCChHHHHHHHHH
Q 012326 68 AVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 68 ~iLL~GppGtGKT~lA~~ia~ 88 (466)
.+++.|++|+|||++..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 688999999999999999874
No 419
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.93 E-value=0.49 Score=49.03 Aligned_cols=62 Identities=13% Similarity=0.276 Sum_probs=43.6
Q ss_pred eEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhhcch-------hhHHHHhhhcccccc
Q 012326 189 VIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHCVTL-------HEIDVINSRTQGFLA 256 (466)
Q Consensus 189 ~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~~~l-------~~ld~~~~~~~~~~~ 256 (466)
-+.|..+||.++.+++++.++++|+. ..+++.| +...|.+++..... .+++.+...+.||.+
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~----~i~i~~P--~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~ 408 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDR----EVDIGIP--DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCE----EEECCCC--CHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCH
T ss_pred ceEEEEecCCccccCHHHhCCCcCce----EEEeCCC--CHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcH
Confidence 37778899999999999999999988 4566666 45566666643211 245666777776654
No 420
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.93 E-value=0.096 Score=50.63 Aligned_cols=27 Identities=26% Similarity=0.323 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+++.+.++|++|+||||++..+|..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999998764
No 421
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.92 E-value=0.11 Score=54.66 Aligned_cols=26 Identities=38% Similarity=0.512 Sum_probs=23.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..++|+|+||+||||+|+.+++.++
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 46788999999999999999999875
No 422
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.90 E-value=0.087 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
..+++.|+||+|||++.+++..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5889999999999999999986
No 423
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.89 E-value=0.087 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.1
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
..+.|.|+||+|||++.+++..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999864
No 424
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.85 E-value=0.17 Score=50.04 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=29.2
Q ss_pred HHHHHcCCCCCceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 56 LQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 56 l~~l~~~~~~~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
++.+ -...++.-+.|.||+|+||||+++.++.....
T Consensus 62 ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 62 IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4545 44555678899999999999999999998863
No 425
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.84 E-value=0.097 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|+.++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999998863
No 426
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.84 E-value=0.098 Score=45.46 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||++..++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998853
No 427
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.82 E-value=0.098 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|++++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57899999999999999999863
No 428
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.81 E-value=0.097 Score=46.59 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
...+++.|++|+|||+|+.++...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 358899999999999999998753
No 429
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.79 E-value=0.1 Score=46.19 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|++++...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 57899999999999999998863
No 430
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.78 E-value=0.1 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
.-.+++.|++|+|||+|++++...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998863
No 431
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.75 E-value=0.095 Score=46.10 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
-.+++.|+||+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999998877654
No 432
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.75 E-value=0.12 Score=47.35 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=23.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCceE
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETPFA 97 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p~~ 97 (466)
-.+-|+|..||||||+++.+++ +| .|++
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g--~~vi 37 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RG--ASLV 37 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TT--CEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC--CcEE
Confidence 4678999999999999999998 77 5544
No 433
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.74 E-value=0.1 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|++++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999864
No 434
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.74 E-value=0.076 Score=46.18 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||++++++...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999998863
No 435
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.72 E-value=0.095 Score=45.65 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=20.1
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
..+++.|++|+|||+|++++..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5789999999999999999884
No 436
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.72 E-value=0.098 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.2
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
...+++.|++|+|||++.+++..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998763
No 437
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.71 E-value=0.1 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
..+++.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68899999999999999999764
No 438
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.70 E-value=0.089 Score=50.96 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.6
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
+..+++.|++|+||||++..+|..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999997763
No 439
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.67 E-value=0.1 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|.+++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999999863
No 440
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.65 E-value=0.099 Score=46.36 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|+.++...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999999863
No 441
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.64 E-value=0.11 Score=45.86 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=20.2
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
..+++.|++|+|||+|..++..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999875
No 442
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.62 E-value=0.11 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|++++...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999998863
No 443
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.62 E-value=0.062 Score=48.26 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.5
Q ss_pred CCceEEEecCCCCChHHHHHHHHH
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
++..+.|.|++|+|||||.++++.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999998763
No 444
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.61 E-value=0.11 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|.+++...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 445
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.61 E-value=0.11 Score=46.44 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|+.++...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 68999999999999999999753
No 446
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.60 E-value=0.11 Score=45.65 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
..+++.|++|+|||+++.++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998753
No 447
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.59 E-value=0.07 Score=52.95 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||.|+||||+.+.++....
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 456788999999999999999997663
No 448
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.56 E-value=0.1 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
-.+++.|++|+|||+|++++...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 578999999999999999998644
No 449
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.51 E-value=0.25 Score=50.30 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=23.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcCC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLGL 92 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~~ 92 (466)
++..++++||+|+||||++..+|..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3567889999999999999999987743
No 450
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.49 E-value=0.1 Score=46.47 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.9
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||+|+.++..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999875
No 451
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.46 E-value=0.092 Score=49.96 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=27.6
Q ss_pred cceeeeecccc-ccHHHHHHHHHHhhhcCCCeEEEEecc
Q 012326 290 PGVLFIDEVHM-LDVECFSFLNRALENEMAPILVVATNR 327 (466)
Q Consensus 290 ~~vl~iDEi~~-l~~~~~~~L~~~le~~~~~iiil~tn~ 327 (466)
+.++++||.-. |++.....+.+.+.+... .+|++|++
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivtHd 184 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVTHE 184 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESC
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEcC
Confidence 67999999875 577777777777766444 77778875
No 452
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.44 E-value=0.1 Score=46.66 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999998763
No 453
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.42 E-value=0.1 Score=52.64 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.2
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 64 IAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 64 ~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
.++.-+.|.||.||||||+.+.++...
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 456788899999999999999999644
No 454
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.39 E-value=0.11 Score=46.52 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
..+++.|++|+|||+|++++...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 67999999999999999999863
No 455
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.33 E-value=0.11 Score=46.28 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.++|.|+||+|||+|.+++...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998864
No 456
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.31 E-value=0.088 Score=51.33 Aligned_cols=23 Identities=35% Similarity=0.706 Sum_probs=20.9
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
++++||.|++|+|||++|..+.+
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999998764
No 457
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.31 E-value=0.11 Score=45.62 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.5
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
...+++.|++|+|||++.+++..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999874
No 458
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=91.29 E-value=0.44 Score=37.00 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=57.6
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHH
Q 012326 356 TKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLF 430 (466)
Q Consensus 356 ~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~~~ 430 (466)
-.||+.++..+||+..++...+. ++.-++.|++.+.+-+...+-++++.|+..|...+...|+.+|+..++.-.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 46899999999999988765432 122267788887656777888899999888877778899999999887643
No 459
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.28 E-value=0.11 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.8
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
.-.+++.|++|+|||+|.+++..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 36899999999999999999986
No 460
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.27 E-value=0.13 Score=51.53 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=51.2
Q ss_pred cceeeeecccccc----HHHHHHHHHHhhhcC--CCeEEEEeccceeEeecccccCCCCCC--------hhHHhhhhhhc
Q 012326 290 PGVLFIDEVHMLD----VECFSFLNRALENEM--APILVVATNRGITRIRGTNYKSAHGIP--------MDLLDRLLIIS 355 (466)
Q Consensus 290 ~~vl~iDEi~~l~----~~~~~~L~~~le~~~--~~iiil~tn~~~~~~~~~~~~~~~~l~--------~~llsR~~~i~ 355 (466)
+.++++||+|.+. +.....+.+.+.... .-.++++|.. +..+. .++++.|...-
T Consensus 263 ~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~------------~~d~~~~~~~~~~~~il~n~~~~i 330 (392)
T 4ag6_A 263 RTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQN------------VIDFLAPEVQRYGQALLDNPTYKL 330 (392)
T ss_dssp TCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESC------------GGGGGSTTTHHHHHHHHHSCSEEE
T ss_pred cEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCC------------HHHhhChhhHHHHHHHHHhhhhhh
Confidence 7899999999985 334455555544322 2236777765 44443 37888885444
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCccCHHHHHHHHHhc
Q 012326 356 TKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVG 391 (466)
Q Consensus 356 ~~pl~~~el~~iL~~~~~~~~~~i~~~~l~~l~~~a 391 (466)
+-+.+..+...+... +.+++...+.|....
T Consensus 331 ~l~~~~~~~~~~~~~------~~ls~~e~~~l~~~~ 360 (392)
T 4ag6_A 331 LLAQGEKDLEAITTL------MNLSEAEHDLLVNAK 360 (392)
T ss_dssp ECSCCHHHHHHHHHH------TTCCHHHHHHHHTCC
T ss_pred eeCCChhhHHHHHHH------hCCCHHHHHhccCCC
Confidence 455666665443332 337888888777654
No 461
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.27 E-value=0.19 Score=45.80 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=23.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcCCCCc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLGLETP 95 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~~~~p 95 (466)
+=|.|.|+.|+||||.++.+++.+....+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 34678899999999999999998854333
No 462
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.23 E-value=0.14 Score=47.87 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHcC
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
..+++.|.+|+||||++..++..+.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999998774
No 463
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.19 E-value=0.12 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.6
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
...+++.|++|+|||+|+.++..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36889999999999999999885
No 464
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.17 E-value=0.44 Score=46.29 Aligned_cols=61 Identities=15% Similarity=0.313 Sum_probs=42.7
Q ss_pred CeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhh--------cchhhHHHHhhhcccccc
Q 012326 188 DVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHC--------VTLHEIDVINSRTQGFLA 256 (466)
Q Consensus 188 d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~--------~~l~~ld~~~~~~~~~~~ 256 (466)
..+.|..+||.++.+++++.+ ||+. ..+++.|+ ...|..++.. ++..+++.+...+.||.+
T Consensus 153 ~~v~vi~atn~~~~ld~al~~--Rf~~----~i~~~~p~--~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg 221 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRR--RFER----RIYIPLPD--LAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSG 221 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--HCCE----EEECCCCC--HHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCH
T ss_pred CceEEEEecCChhhCCHHHHc--ccCe----EEEeCCCC--HHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCH
Confidence 347788889999999999877 6766 55777774 4556555532 344567778887777754
No 465
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.16 E-value=0.11 Score=46.81 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|++++...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 466
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.15 E-value=0.12 Score=51.36 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=21.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHc
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+..+.|.||+|+|||||+++++...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4678899999999999999998654
No 467
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.11 E-value=0.15 Score=45.96 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHc
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
+++-.+++||+|+|||+.+..++..+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35678899999999999998888765
No 468
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.11 E-value=0.13 Score=46.40 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
..+++.|++|+|||+|..++...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 469
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.10 E-value=0.12 Score=52.74 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHcC
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++.++++|++|+||||++..+|..+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47888999999999999999997663
No 470
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.10 E-value=0.1 Score=50.37 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=22.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHc
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
++..+.|.||.|+|||||++.++..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 46778899999999999999998665
No 471
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.09 E-value=0.14 Score=44.04 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
...+|+||.|+|||++..++.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999998655
No 472
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.08 E-value=0.12 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||+|++++...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57899999999999999998864
No 473
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.04 E-value=0.12 Score=47.78 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
..++|.|++|+|||+|++++..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 6899999999999999999885
No 474
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.02 E-value=0.089 Score=45.87 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.7
Q ss_pred CceEEEecCCCCChHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMA 87 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia 87 (466)
...+++.|++|+|||++..++.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4789999999999999998865
No 475
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.97 E-value=0.14 Score=51.44 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=25.6
Q ss_pred CCCCCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 62 GKIAGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 62 ~~~~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
....+..++|.||+|+|||++++.+++.+.
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 444568999999999999999999998764
No 476
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.95 E-value=0.16 Score=51.71 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=21.4
Q ss_pred CCCce--EEEecCCCCChHHHHHHHHHH
Q 012326 64 IAGRA--VLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 64 ~~~~~--iLL~GppGtGKT~lA~~ia~~ 89 (466)
.++.. +.|.||+|+|||||.+.++..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34445 889999999999999999865
No 477
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.89 E-value=0.08 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=10.0
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||+|+.++..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999874
No 478
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.84 E-value=0.087 Score=48.69 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=21.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHH
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
++.-+.|.||.|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3567789999999999999999876
No 479
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.82 E-value=0.13 Score=50.29 Aligned_cols=24 Identities=42% Similarity=0.710 Sum_probs=22.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
+++++|.|++|+|||++|.++.+.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 589999999999999999999863
No 480
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.82 E-value=0.099 Score=46.74 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.0
Q ss_pred ceEEEecCCCCChHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMA 87 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia 87 (466)
-.+++.|+||+|||+|++++.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999875
No 481
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.80 E-value=0.16 Score=51.62 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHc
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
..+-|.||+|+||||+.++++...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 477799999999999999999754
No 482
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=90.77 E-value=0.64 Score=39.32 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=50.8
Q ss_pred HHHHHHHHhhcCCccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 365 RKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 365 ~~iL~~~~~~~~~~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
..|.+..+...++.++++++..|+++.. +++.++...+..+|...|++.|+.+||.-+..
T Consensus 26 gkIvee~~~~~~~~vS~~ai~aL~El~~----~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 26 GALAQDVAEDKGVLFSKQTVAAISEITF----RQAENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHHHHHHHHTCEECHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4555555556689999999999999884 78899999999999999999999999988764
No 483
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.76 E-value=0.13 Score=45.29 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.7
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
.-.+++.|++|+|||++.+++..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999874
No 484
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.75 E-value=0.12 Score=45.76 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.3
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
...+++.|++|+|||+|++++..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998763
No 485
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.75 E-value=0.14 Score=45.31 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
-.+++.|++|+|||++++++...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999864
No 486
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.75 E-value=0.12 Score=53.21 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=24.4
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHc
Q 012326 63 KIAGRAVLIAGQPGTGKTAIAMGMAKSL 90 (466)
Q Consensus 63 ~~~~~~iLL~GppGtGKT~lA~~ia~~l 90 (466)
..++.-+.|.||.|+|||||++.++...
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3456789999999999999999999865
No 487
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.73 E-value=0.075 Score=52.85 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.1
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHcC
Q 012326 65 AGRAVLIAGQPGTGKTAIAMGMAKSLG 91 (466)
Q Consensus 65 ~~~~iLL~GppGtGKT~lA~~ia~~l~ 91 (466)
++..+.|.||.|+|||||.+.++....
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456788999999999999999997653
No 488
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.73 E-value=0.61 Score=46.06 Aligned_cols=61 Identities=15% Similarity=0.313 Sum_probs=42.3
Q ss_pred CeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhh--------cchhhHHHHhhhcccccc
Q 012326 188 DVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHC--------VTLHEIDVINSRTQGFLA 256 (466)
Q Consensus 188 d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~--------~~l~~ld~~~~~~~~~~~ 256 (466)
..+.|..+||.++.+++++.+ ||+. ..+++.|+ ...|..++.. ++..+++.+...+.||.+
T Consensus 186 ~~v~vI~atn~~~~ld~al~r--Rf~~----~i~i~~P~--~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg 254 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRR--RFER----RIYIPLPD--LAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSG 254 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--TCCE----EEECCCCC--HHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCH
T ss_pred CCeEEEeecCCcccCCHHHHc--ccCE----EEEeCCcC--HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCH
Confidence 347788899999999999877 6766 55777774 4456555532 344466777777777754
No 489
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.71 E-value=0.56 Score=47.90 Aligned_cols=78 Identities=17% Similarity=0.312 Sum_probs=50.7
Q ss_pred CeEEEEccCCCcccccccccccccccccCCceeeecCCChhHHhHHHhhhh--------cchhhHHHHhhhccccccccc
Q 012326 188 DVIAIDKVSGKITKLGRSFSRSRDYDAMGPHTKFVQCPDGELQKRKEVVHC--------VTLHEIDVINSRTQGFLALFT 259 (466)
Q Consensus 188 d~i~i~~~t~~~~~~~~~~~r~~~~d~~~~~~~~i~~p~~~~~~r~~~~~~--------~~l~~ld~~~~~~~~~~~l~~ 259 (466)
..+.|..+||.++.+++++.| ||+. ..+++.|+. ..|..++.. ++..+++.+...+.||++
T Consensus 270 ~~v~vI~atn~~~~ld~al~r--Rf~~----~i~i~~P~~--~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sg--- 338 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRR--RFEK----RIYIPLPEA--HARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSG--- 338 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHT--TCCE----EEECCCCCH--HHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCH---
T ss_pred CCEEEEecCCCccccCHHHHh--hcce----EEEeCCcCH--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCH---
Confidence 346777889999999999877 6765 567777754 455555532 344567788888888765
Q ss_pred CCccchhHHHHHHHHHHHHH
Q 012326 260 GDTGEIRAEVREQIDTKVAE 279 (466)
Q Consensus 260 ~~~~ei~~~~r~~i~~~~~~ 279 (466)
.++..-++++....+..
T Consensus 339 ---adl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 339 ---ADISIIVRDALMQPVRK 355 (444)
T ss_dssp ---HHHHHHHHHHHTHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 44555555554444433
No 490
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.68 E-value=0.14 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
..+++.|++|+|||+|+.++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999998863
No 491
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.68 E-value=0.13 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||+|++++..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5889999999999999999873
No 492
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.67 E-value=0.098 Score=46.84 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.2
Q ss_pred ceEEEecCCCCChHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMA 87 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia 87 (466)
..+++.|++|+|||++.+++.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 578999999999999999885
No 493
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.64 E-value=0.14 Score=45.50 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.4
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 012326 66 GRAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 66 ~~~iLL~GppGtGKT~lA~~ia~ 88 (466)
.-.+++.|++|+|||++.+++..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999874
No 494
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.63 E-value=0.12 Score=45.87 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.3
Q ss_pred ceEEEecCCCCChHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMA 87 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia 87 (466)
-.+++.|++|+|||+|+.++.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999875
No 495
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=90.55 E-value=0.96 Score=33.71 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhhcCC-ccCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 012326 359 YTRDEIRKILDIRCQEEDV-EMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYR 428 (466)
Q Consensus 359 l~~~el~~iL~~~~~~~~~-~i~~~~l~~l~~~a~~g~~R~ai~lL~~a~~~a~~~~~~~It~~~v~~~~~ 428 (466)
++.+-+..+ ++..|+ .+++++...|++-.. -++.++++.|..+++..++..++.+||+.++.
T Consensus 7 lp~~~v~~i----aes~Gi~~lsddaa~~LA~dvE----yr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 7 ISAESMKVI----AESIGVGSLSDDAAKELAEDVS----IKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCHHHHHHH----HHHTTCCCBCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred CCHHHHHHH----HHHCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 454444444 445677 799999999998763 35678889999999989999999999998863
No 496
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.54 E-value=0.14 Score=45.43 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.4
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||+|++++..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999863
No 497
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.51 E-value=0.15 Score=45.74 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=20.1
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||+|++++..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 5789999999999999999875
No 498
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.49 E-value=0.15 Score=46.02 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.9
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.++|.|++|+|||+|++++..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 5789999999999999999874
No 499
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.47 E-value=0.12 Score=45.26 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.2
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAK 88 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~ 88 (466)
-.+++.|++|+|||+|.+++..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999874
No 500
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.46 E-value=0.15 Score=45.63 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 012326 67 RAVLIAGQPGTGKTAIAMGMAKS 89 (466)
Q Consensus 67 ~~iLL~GppGtGKT~lA~~ia~~ 89 (466)
..+++.|++|+|||+|+.++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999998863
Done!