BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012327
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 103/242 (42%), Gaps = 36/242 (14%)
Query: 121 NIDRRVDLDRSIQPNDRRYYPSLSLMAAKLSYENEAFINNVVKDHWKMEFLGFVNFWNDF 180
+ID + S + N+ YY +LS + + A + + D E L + W+
Sbjct: 1 SIDGGIRAATSQEINELTYYTTLSANSYCRTVIPGATWDCIHCD--ATEDLKIIKTWSTL 58
Query: 181 QKSYSTQAFLLRDTKANPNVIVVAFRGTEPFNADDWSVDLD---VSWYKVTNVGKVHKGF 237
Y T A + R + I + FRG+ +W DL VS+ V+ KVHKGF
Sbjct: 59 I--YDTNAMVAR--GDSEKTIYIVFRGSSSIR--NWIADLTFVPVSYPPVSGT-KVHKGF 111
Query: 238 MKALGLQENHGWPKEVDRLSDQPPFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAIL 297
+ + G +N +D+ P + K +TGHSLGGA A+L
Sbjct: 112 LDSYGEVQNELVATVLDQFKQYPSY-------------------KVAVTGHSLGGATALL 152
Query: 298 FVSVLVLHEETLLLDRLEGVYTFGQPRVGDEQFGEYMKENLNKYDVNYRRYVYCNDLVPR 357
L EE L L +YT GQPRVG+ F Y+ + YRR V D+VP
Sbjct: 153 CALDLYQREEGLSSSNLF-LYTQGQPRVGNPAFANYVVST----GIPYRRTVNERDIVPH 207
Query: 358 LP 359
LP
Sbjct: 208 LP 209
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 102/242 (42%), Gaps = 36/242 (14%)
Query: 121 NIDRRVDLDRSIQPNDRRYYPSLSLMAAKLSYENEAFINNVVKDHWKMEFLGFVNFWNDF 180
+I+ + S + N+ YY +LS + + A + + D E L + W+
Sbjct: 1 SINGGIRAATSQEINELTYYTTLSANSYCRTVIPGATWDCIHCD--ATEDLKIIKTWSTL 58
Query: 181 QKSYSTQAFLLRDTKANPNVIVVAFRGTEPFNADDWSVDLD---VSWYKVTNVGKVHKGF 237
Y T A + R I + FRG+ +W DL VS+ V+ KVHKGF
Sbjct: 59 I--YDTNAMVARGDSEK--TIYIVFRGSSSIR--NWIADLTFVPVSYPPVSGT-KVHKGF 111
Query: 238 MKALGLQENHGWPKEVDRLSDQPPFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAIL 297
+ + G +N +D+ P + K +TGHSLGGA A+L
Sbjct: 112 LDSYGEVQNELVATVLDQFKQYPSY-------------------KVAVTGHSLGGATALL 152
Query: 298 FVSVLVLHEETLLLDRLEGVYTFGQPRVGDEQFGEYMKENLNKYDVNYRRYVYCNDLVPR 357
L EE L L +YT GQPRVG+ F Y+ + YRR V D+VP
Sbjct: 153 CALDLYQREEGLSSSNLF-LYTQGQPRVGNPAFANYVVST----GIPYRRTVNERDIVPH 207
Query: 358 LP 359
LP
Sbjct: 208 LP 209
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 103/242 (42%), Gaps = 36/242 (14%)
Query: 121 NIDRRVDLDRSIQPNDRRYYPSLSLMAAKLSYENEAFINNVVKDHWKMEFLGFVNFWNDF 180
+I+ + S + N+ YY +LS + + A + + D E L + W+
Sbjct: 1 SINGGIRAATSQEINELTYYTTLSANSYCRTVIPGATWDCIHCD--ATEDLKIIKTWSTL 58
Query: 181 QKSYSTQAFLLRDTKANPNVIVVAFRGTEPFNADDWSVDLD---VSWYKVTNVGKVHKGF 237
Y T A + R + I + FRG+ +W DL VS+ V+ KVHKGF
Sbjct: 59 I--YDTNAMVARGD--SEKTIYIVFRGSSSIR--NWIADLTFVPVSYPPVSGT-KVHKGF 111
Query: 238 MKALGLQENHGWPKEVDRLSDQPPFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAIL 297
+ + G +N +D+ P + K +TGHSLGGA A+L
Sbjct: 112 LDSYGEVQNELVATVLDQFKQYPSY-------------------KVAVTGHSLGGATALL 152
Query: 298 FVSVLVLHEETLLLDRLEGVYTFGQPRVGDEQFGEYMKENLNKYDVNYRRYVYCNDLVPR 357
L EE L L +YT GQPRVG+ F Y+ + YRR V D+VP
Sbjct: 153 CALDLYQREEGLSSSNLF-LYTQGQPRVGNPAFANYVVST----GIPYRRTVNERDIVPH 207
Query: 358 LP 359
LP
Sbjct: 208 LP 209
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 102/242 (42%), Gaps = 36/242 (14%)
Query: 121 NIDRRVDLDRSIQPNDRRYYPSLSLMAAKLSYENEAFINNVVKDHWKMEFLGFVNFWNDF 180
+I+ + S + N+ YY +LS + + A + + D E L + W+
Sbjct: 1 SINGGIRAATSQEINELTYYTTLSANSYCRTVIPGATWDCIHCD--ATEDLKIIKTWSTL 58
Query: 181 QKSYSTQAFLLRDTKANPNVIVVAFRGTEPFNADDWSVDLD---VSWYKVTNVGKVHKGF 237
Y T A + R + I + FRG+ +W DL VS+ V+ KVHKGF
Sbjct: 59 I--YDTNAMVAR--GDSEKTIYIVFRGSSSIR--NWIADLTFVPVSYPPVSGT-KVHKGF 111
Query: 238 MKALGLQENHGWPKEVDRLSDQPPFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAIL 297
+ + G +N +D+ P + K +TGHSLGGA +L
Sbjct: 112 LDSYGEVQNELVATVLDQFKQYPSY-------------------KVAVTGHSLGGATVLL 152
Query: 298 FVSVLVLHEETLLLDRLEGVYTFGQPRVGDEQFGEYMKENLNKYDVNYRRYVYCNDLVPR 357
L EE L L +YT GQPRVGD F Y+ + YRR V D+VP
Sbjct: 153 CALDLYQREEGLSSSNLF-LYTQGQPRVGDPAFANYVVST----GIPYRRTVNERDIVPH 207
Query: 358 LP 359
LP
Sbjct: 208 LP 209
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 26/174 (14%)
Query: 186 TQAFLLRDTKANPNVIVVAFRGTEPFNADDWSVDLDVSWYKVTNVGKVHKGFMKALGLQE 245
T ++LR K I + FRGT F + + + S YK KVH GF+ +
Sbjct: 63 TNGYVLRSDKQK--TIYLVFRGTNSFRSAITDIVFNFSDYKPVKGAKVHAGFLSSYEQVV 120
Query: 246 NHGWPKEVDRLSDQPPFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAILFVSVLVLH 305
N +P ++L+ P + K I+TGHSLGGA A+L L
Sbjct: 121 NDYFPVVQEQLTAHPTY-------------------KVIVTGHSLGGAQALLAGMDLYQR 161
Query: 306 EETLLLDRLEGVYTFGQPRVGDEQFGEYMKENLNKYDVNYRRYVYCNDLVPRLP 359
E L L ++T G PRVG+ F Y++ + ++R V+ D+VP +P
Sbjct: 162 EPRLSPKNLS-IFTVGGPRVGNPTFAYYVEST----GIPFQRTVHKRDIVPHVP 210
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 33/163 (20%)
Query: 200 VIVVAFRGTEPFNADDWSVDLDVSWYKVTNVG---KVHKGFMKALGLQENHGWPKEVDRL 256
+IV++FRG+ ++W +L+ ++ ++ + H GF + W D
Sbjct: 75 LIVLSFRGSRSI--ENWIGNLNFDLKEINDICSGCRGHDGFTSS--------WRSVAD-- 122
Query: 257 SDQPPFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAILFVSVLVLHEETLLLDRLEG 316
T+RQ +++ ++++ + + + TGHSLGGALA V+ L +D
Sbjct: 123 ---------TLRQKVEDAVREHPDYRVVFTGHSLGGALAT--VAGADLRGNGYDID---- 167
Query: 317 VYTFGQPRVGDEQFGEYMKENLNKYDVNYRRYVYCNDLVPRLP 359
V+++G PRVG+ F E++ R + ND+VPRLP
Sbjct: 168 VFSYGAPRVGNRAFAEFLTVQTGG---TLYRITHTNDIVPRLP 207
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 33/163 (20%)
Query: 200 VIVVAFRGTEPFNADDWSVDLDVSWYKVTNVG---KVHKGFMKALGLQENHGWPKEVDRL 256
+IV++FRG+ ++W +L+ ++ ++ + H GF + W D
Sbjct: 75 LIVLSFRGSRSI--ENWIGNLNFDLKEINDICSGCRGHDGFTSS--------WRSVAD-- 122
Query: 257 SDQPPFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAILFVSVLVLHEETLLLDRLEG 316
T+RQ +++ ++++ + + + TGH+LGGALA V+ L +D
Sbjct: 123 ---------TLRQKVEDAVREHPDYRVVFTGHALGGALAT--VAGADLRGNGYDID---- 167
Query: 317 VYTFGQPRVGDEQFGEYMKENLNKYDVNYRRYVYCNDLVPRLP 359
V+++G PRVG+ F E++ R + ND+VPRLP
Sbjct: 168 VFSYGAPRVGNRAFAEFLTVQTGG---TLYRITHTNDIVPRLP 207
>pdb|1USW|A Chain A, Crystal Structure Of Ferulic Acid Esterase From
Aspergillus Niger
Length = 260
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 45/195 (23%)
Query: 188 AFLLRDTKANPNVIVVAFRGTEPFNADDWSVDLDVSWYKVT--------NVGKVHKGFMK 239
++LRD + I+ FRGT D ++ LD + Y +T N +VH G+
Sbjct: 50 GWILRDDTSKE--IITVFRGT----GSDTNLQLDTN-YTLTPFDTLPQCNDCEVHGGYYI 102
Query: 240 ALGLQENHGWPKEVDRLSDQPPFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAILFV 299
GW D+ + ++K+ + + +TGHSLG ++A L
Sbjct: 103 --------GWISVQDQ-----------VESLVKQQASQYPDYALTVTGHSLGASMAALTA 143
Query: 300 SVLVLHEETLLLDRLEGVYTFGQPRVGDEQFGEYMKENL---NKYDVNYRRYVYCNDLVP 356
+ L + + L YTFG+PR G++ F YM + + Y R + ND +P
Sbjct: 144 AQLSATYDNVRL------YTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIP 197
Query: 357 RLPYDDKTLFFKHFG 371
LP D+ + H G
Sbjct: 198 NLPPADEG--YAHGG 210
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 43/183 (23%)
Query: 188 AFLLRDTKANPNVIVVAFRGTEPFNADDWSVDLDVSWYKVT--------NVGKVHKGFMK 239
++LRD + I+ FRGT D ++ LD + Y +T N +VH G+
Sbjct: 50 GWILRDDTSKE--IITVFRGT----GSDTNLQLDTN-YTLTPFDTLPQCNDCEVHGGYYI 102
Query: 240 ALGLQENHGWPKEVDRLSDQPPFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAILFV 299
GW D+ + ++K+ + + +TGHSLG ++A L
Sbjct: 103 --------GWISVQDQ-----------VESLVKQQASQYPDYALTVTGHSLGASMAALTA 143
Query: 300 SVLVLHEETLLLDRLEGVYTFGQPRVGDEQFGEYMKENL---NKYDVNYRRYVYCNDLVP 356
+ L + + L YTFG+PR G++ F YM + + Y R + ND +P
Sbjct: 144 AQLSATYDNVRL------YTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIP 197
Query: 357 RLP 359
LP
Sbjct: 198 NLP 200
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 43/183 (23%)
Query: 188 AFLLRDTKANPNVIVVAFRGTEPFNADDWSVDLDVSWYKVT--------NVGKVHKGFMK 239
++LRD + I+ FRGT D ++ LD + Y +T N +VH G+
Sbjct: 50 GWILRDDTSKE--IITVFRGT----GSDTNLQLDTN-YTLTPFDTLPQCNDCEVHGGYYI 102
Query: 240 ALGLQENHGWPKEVDRLSDQPPFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAILFV 299
GW D+ + ++K+ + + +TGHSLG ++A L
Sbjct: 103 --------GWISVQDQ-----------VESLVKQQASQYPDYALTVTGHSLGASMAALTA 143
Query: 300 SVLVLHEETLLLDRLEGVYTFGQPRVGDEQFGEYMKENL---NKYDVNYRRYVYCNDLVP 356
+ L + + L YTFG+PR G++ F YM + + Y R + ND +P
Sbjct: 144 AQLSATYDNVRL------YTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIP 197
Query: 357 RLP 359
LP
Sbjct: 198 NLP 200
>pdb|2BJH|A Chain A, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|B Chain B, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|C Chain C, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
Length = 260
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 45/195 (23%)
Query: 188 AFLLRDTKANPNVIVVAFRGTEPFNADDWSVDLDVSWYKVT--------NVGKVHKGFMK 239
++LRD + I+ FRGT D ++ LD + Y +T N +VH G+
Sbjct: 50 GWILRDDTSKE--IITVFRGT----GSDTNLQLDTN-YTLTPFDTLPQCNDCEVHGGYYI 102
Query: 240 ALGLQENHGWPKEVDRLSDQPPFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAILFV 299
GW D+ + ++K+ + + +TGH+LG ++A L
Sbjct: 103 --------GWISVQDQ-----------VESLVKQQASQYPDYALTVTGHALGASMAALTA 143
Query: 300 SVLVLHEETLLLDRLEGVYTFGQPRVGDEQFGEYMKENL---NKYDVNYRRYVYCNDLVP 356
+ L + + L YTFG+PR G++ F YM + + Y R + ND +P
Sbjct: 144 AQLSATYDNVRL------YTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIP 197
Query: 357 RLPYDDKTLFFKHFG 371
LP D+ + H G
Sbjct: 198 NLPPADEG--YAHGG 210
>pdb|1TIA|A Chain A, An Unusual Buried Polar Cluster In A Family Of Fungal
Lipases
Length = 279
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 41/215 (19%)
Query: 179 DFQKSYSTQAFLLRDTKANPNVIVVAFRGTEPFNADDWSVDLDVSWYKVTNVGKVHKGFM 238
DF S T + +V+AFRG+ ++ +W D + + TN G + G +
Sbjct: 54 DFSDSTITDTAGYIAVDHTNSAVVLAFRGS--YSVRNWVAD---ATFVHTNPG-LCDGCL 107
Query: 239 KALGLQENHGWPKEVDRLSDQPPFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAILF 298
LG + W D I + LKE++ +N + ++ GHSLG A+A L
Sbjct: 108 AELGFWSS--WKLVRDD-----------IIKELKEVVAQNPNYELVVVGHSLGAAVATLA 154
Query: 299 VSVLVLHEETLLLDRLEG-----VYTFGQPRVGDEQFGEYMKENLNKYDVNYRRYVYCND 353
+ L R +G +Y + PRVG+ +Y+ N + R+ + ND
Sbjct: 155 ATDL----------RGKGYPSAKLYAYASPRVGNAALAKYITAQGNNF-----RFTHTND 199
Query: 354 LVPRLPYDDKTLFFKHFGPCLYFNSCYQGKVMEEE 388
VP+LP ++ + H P + S V +
Sbjct: 200 PVPKLPL--LSMGYVHVSPEYWITSPNNATVSTSD 232
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 64/161 (39%), Gaps = 33/161 (20%)
Query: 201 IVVAFRGTEPFNADDW--SVDLDVSWYKVTNVGKVHKGFMKALGLQENHGWPKEVDRLSD 258
IVV+FRG+ N +W ++D D +T+ VH GF A
Sbjct: 75 IVVSFRGS--INIRNWLTNLDFDQDDCSLTSGCGVHSGFQNAWNEISAAATAAVAKARKA 132
Query: 259 QPPFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAILFVSVLVLHEETLLLDRLEGVY 318
P F K + GHSLGGA+A L + L + L +Y
Sbjct: 133 NPSF-------------------KVVSVGHSLGGAVATLAGANLRIGGTPL------DIY 167
Query: 319 TFGQPRVGDEQFGEYMKENLNKYDVNYRRYVYCNDLVPRLP 359
T+G PRVG+ Q ++ N+ + R D VPRLP
Sbjct: 168 TYGSPRVGNTQLAAFVS---NQAGGEF-RVTNAKDPVPRLP 204
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 263 AYYTIRQMLKEILQKNKEAKFILTGHSLGGALAILFVSVLVLHEETLLLDRLEGVYTFGQ 322
Y I L ++++ + + +TGHSLGGA A+LF L ++ L V T GQ
Sbjct: 136 TYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPL------VVTLGQ 189
Query: 323 PRVGDEQFGEYM------KENLNKYDVNYRRYVY----CNDLVPRLPYDD 362
P VG+ F ++ +EN + V+ R +Y D+VP++P+ D
Sbjct: 190 PIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWD 239
>pdb|2ORY|A Chain A, Crystal Structure Of M37 Lipase
pdb|2ORY|B Chain B, Crystal Structure Of M37 Lipase
Length = 346
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 65/159 (40%), Gaps = 9/159 (5%)
Query: 202 VVAFRGTEPFNADDWSV-DLDVSWYKVTNVGKVHKGFMKALGLQENHGWPKEVDRLSDQP 260
V+A RGT P + DW D VS K V +K + ++G K + +L +
Sbjct: 86 VIAIRGTNPVSISDWLFNDFMVSAMKKWPYASVEGRILK-ISESTSYGL-KTLQKLKPKS 143
Query: 261 --PFAYYTIRQMLKEILQKNKEAKFILTGHSLGGALAILFVSVLVLHEETLLLDRLE-GV 317
P TI Q L E + +AK +TGHS GGAL+ L + L ++
Sbjct: 144 HIPGENKTILQFLNEKIGPEGKAKICVTGHSKGGALSSTLALWLKDIQGVKLSQNIDIST 203
Query: 318 YTFGQPRVGDEQFGEYMKENLNKYDVNYRRYVYCNDLVP 356
F P G+ F +Y + L R D+VP
Sbjct: 204 IPFAGPTAGNADFADYFDDCLGD---QCTRIANSLDIVP 239
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 20/142 (14%)
Query: 201 IVVAFRGT-EPFNADDWSVDLDVSWYKVTNVGKVHKGFMKALGLQENHGWPKEVDRLSDQ 259
IVV++RG+ +P +W D + + + N K+ + +Q + GW ++
Sbjct: 149 IVVSWRGSVQPL---EWVEDFE---FGLVNAIKIFG--ERNDQVQIHQGWYSIYXSQDER 200
Query: 260 PPFAYYTIR-QMLKEILQ-----KNKEAKFILTGHSLGGALAILFVSVLVLHEETLLLDR 313
PF R Q+L+E+ + K++E + GHSLG ALA L + +V + R
Sbjct: 201 SPFTKTNARDQVLREVGRLLEKYKDEEVSITICGHSLGAALATLSATDIVANGYNRPKSR 260
Query: 314 LE-----GVYTFGQPRVGDEQF 330
+ + F PRVGD F
Sbjct: 261 PDKSCPVTAFVFASPRVGDSDF 282
>pdb|3UUE|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 279
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 282 KFILTGHSLGGALAILFVSVLVLHEETLLLDRLEGVYTFGQPRVGDEQFGEYMKENLNKY 341
+ + GHSLG A+ +L + E + L Y FG PR+G+ F ++ + +
Sbjct: 139 RVTVIGHSLGAAMGLL----CAMDIELRMDGGLYKTYLFGLPRLGNPTFASFVDQKIGD- 193
Query: 342 DVNYRRYVYCNDLVPRLPYDDKTLFFKH 369
+ + D VP +P + L ++H
Sbjct: 194 --KFHSIINGRDWVPTVP--PRALGYQH 217
>pdb|3UUF|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 278
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 282 KFILTGHSLGGALAILFVSVLVLHEETLLLDRLEGVYTFGQPRVGDEQFGEYMKENLNKY 341
+ + GHSLG A+ +L + E + L Y FG PR+G+ F ++ + +
Sbjct: 138 RVTVIGHSLGAAMGLL----CAMDIELRMDGGLYKTYLFGLPRLGNPTFASFVDQKIGD- 192
Query: 342 DVNYRRYVYCNDLVPRLPYDDKTLFFKH 369
+ + D VP +P + L ++H
Sbjct: 193 --KFHSIINGRDWVPTVP--PRALGYQH 216
>pdb|1XZI|A Chain A, Fusarium Solani Cutinase Mutant With Thr 119 Replaced By
His
Length = 214
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 24/98 (24%)
Query: 267 IRQMLKEILQKNK---EAKFILTGHSLGGALAILFVSVLVLHEETLLLDRLEGVYTFGQP 323
IR+ML Q N +A I GHS G ALA + L ++ + D++ G FG
Sbjct: 95 IREMLGLFQQANTKCPDATLIAGGHSQGAALAAASIEDL----DSAIRDKIAGTVLFG-- 148
Query: 324 RVGDEQFGEYMKENLNKYDV-NY---RRYVYCN--DLV 355
Y K N+ + NY R V+CN DLV
Sbjct: 149 ---------YTKNLQNRGRIPNYPADRTKVFCNTGDLV 177
>pdb|3PIG|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum
pdb|3PIG|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum
pdb|3PIJ|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum -
Complex With Fructose
pdb|3PIJ|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum -
Complex With Fructose
Length = 526
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 38 FIECPEDS--RHPNFRRRWLIFVSVVAQKCLGFLRKPMAAVGYLI 80
+ECP+ S + + +W+I S + K GF+ + ++ GY+I
Sbjct: 233 MLECPDFSPIKDKDGNEKWVIGFSAMGSKPSGFMNRNVSNAGYMI 277
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 117 SFLGNIDRRVDLDRSIQPNDRRYY--PSLSLMAAKLSYENEAFINNVVKDHWKMEFLG 172
S+ +I R D D + P D + PS + A K + + EAF + + H K+ LG
Sbjct: 205 SYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFFKDYAEAHAKLSNLG 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,721,789
Number of Sequences: 62578
Number of extensions: 584457
Number of successful extensions: 1243
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1199
Number of HSP's gapped (non-prelim): 24
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)