BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012328
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 168/426 (39%), Gaps = 92/426 (21%)
Query: 96 DGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPE 155
+G G+ A KDI R +++Q+P L + PD V I + + P
Sbjct: 36 EGLGLVALKDIS---RNDVILQVPKRLWIN----------PDAVA-ASEIGRVCSELKP- 80
Query: 156 TDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMRE 215
W L + L+ ++D+ W+ Y LP E S + +EE+L ELQ L T
Sbjct: 81 --W-LSVILFLIRERSREDSVWKHYFGILPQ--ETDSTIYWSEEELQELQGSQLLKTTVS 135
Query: 216 QQKRAREFWEKNWHSGVPLKIKRLAHDP---ERFIWAVSIAQSRCINMQVRIGALVQDAN 272
++ + K + L KRL DP + F WA I +SR + ++R LV
Sbjct: 136 VKEYVKNECLK-LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFS-RLRNENLV---- 189
Query: 273 MLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQ-------------HVRRGEEMTVN 319
++P AD++NHS +D EV AG V+ GE++ +
Sbjct: 190 -VVPMADLINHSAGVTT------EDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQ 242
Query: 320 YMHGQMNDMLMQRYGFSSPVNPWNVIQFS---GDARIHLDSFLSVFNISGLPEEYYHNII 376
Y + N L YGF P + + ++ D L V +G + Y +I
Sbjct: 243 YDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIF 302
Query: 377 AAARTLP----------TWSDGDVPLVPSIERKAV-----------------KELQEECR 409
RTLP D L+ S+ R + K ++E C+
Sbjct: 303 -YNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACK 361
Query: 410 QMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKV----------IKALDI 459
LA + TT +QD+++ + + R L A+ R K+ + ++ + L+
Sbjct: 362 SALAGYHTTIEQDRELKEGNLDSR--LAIAVGIREGEKMVLQQIDGIFEQKELELDQLEY 419
Query: 460 YQDRIL 465
YQ+R L
Sbjct: 420 YQERRL 425
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 168/426 (39%), Gaps = 92/426 (21%)
Query: 96 DGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPE 155
+G G+ A KDI R +++Q+P L + PD V I + + P
Sbjct: 32 EGLGLVALKDIS---RNDVILQVPKRLWIN----------PDAVA-ASEIGRVCSELKP- 76
Query: 156 TDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMRE 215
W L + L+ ++D+ W+ Y LP E S + +EE+L ELQ L T
Sbjct: 77 --W-LSVILFLIRERSREDSVWKHYFGILPQ--ETDSTIYWSEEELQELQGSQLLKTTVS 131
Query: 216 QQKRAREFWEKNWHSGVPLKIKRLAHDP---ERFIWAVSIAQSRCINMQVRIGALVQDAN 272
++ + K + L KRL DP + F WA I +SR + ++R LV
Sbjct: 132 VKEYVKNECLK-LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFS-RLRNENLV---- 185
Query: 273 MLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQ-------------HVRRGEEMTVN 319
++P AD++NHS +D EV AG V+ GE++ +
Sbjct: 186 -VVPMADLINHSAGVTT------EDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQ 238
Query: 320 YMHGQMNDMLMQRYGFSSPVNPWNVIQFS---GDARIHLDSFLSVFNISGLPEEYYHNII 376
Y + N L YGF P + + ++ D L V +G + Y +I
Sbjct: 239 YDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIF 298
Query: 377 AAARTLP----------TWSDGDVPLVPSIERKAV-----------------KELQEECR 409
RTLP D L+ S+ R + K ++E C+
Sbjct: 299 -YNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACK 357
Query: 410 QMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKV----------IKALDI 459
LA + TT +QD+++ + + R L A+ R K+ + ++ + L+
Sbjct: 358 SALAGYHTTIEQDRELKEGNLDSR--LAIAVGIREGEKMVLQQIDGIFEQKELELDQLEY 415
Query: 460 YQDRIL 465
YQ+R L
Sbjct: 416 YQERRL 421
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 268 VQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNY 320
V DA M A +NHS +PNC+ D +++ A + + RGEE+T +Y
Sbjct: 115 VVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDY 167
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a
pdb|2QFZ|B Chain B, Crystal Structure Of Human Tbc1 Domain Family Member 22a
Length = 345
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 282 NHSF-QPNCFFHWRFKDRMLEVMVN-----AGQHVRRGEEMTVNYMHGQMNDMLMQRYGF 335
N++F QP + K +MLE +V+ +H+ + E + + MN++LM+
Sbjct: 205 NYTFAQPGI----QMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPL 260
Query: 336 SSPVNPWNVIQFSGDARIHLD-----SFLSVFNISGLPEEYYHNIIAAARTLPT--WSDG 388
+ W+ Q D H +FL + L E+ + ++ + LPT W D
Sbjct: 261 RCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDE 320
Query: 389 DVPLV 393
D+ L+
Sbjct: 321 DISLL 325
>pdb|2ZDI|A Chain A, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
Ot3
pdb|2ZDI|B Chain B, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
Ot3
Length = 117
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 32/50 (64%)
Query: 392 LVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIK 441
+V + + KAV+EL+E+ + ++Q+QK+ + +KE + ++AA++
Sbjct: 63 IVKTTKEKAVQELKEKIETLEVRLNALNRQEQKINEKVKELTQKIQAALR 112
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 274 LIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 330
L P +LNHS PNC + +++ A + + GEE+T+ Y+ DMLM
Sbjct: 199 LYPSISLLNHSCDPNCSIVFNGP----HLLLRAVRDIEVGEELTICYL-----DMLM 246
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 274 LIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 330
L P +LNHS PNC + +++ A + + GEE+T+ Y+ DMLM
Sbjct: 198 LYPSISLLNHSCDPNCSIVFNGP----HLLLRAVRDIEVGEELTICYL-----DMLM 245
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 274 LIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 330
L P +LNHS PNC + +++ A + + GEE+T+ Y+ DMLM
Sbjct: 197 LYPSISLLNHSCDPNCSIVFNGP----HLLLRAVRDIEVGEELTICYL-----DMLM 244
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 274 LIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 330
L P +LNHS PNC + +++ A + + GEE+T+ Y+ DMLM
Sbjct: 197 LYPSISLLNHSCDPNCSIVFNGP----HLLLRAVRDIEVGEELTICYL-----DMLM 244
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 274 LIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 330
L P +LNHS PNC + +++ A + + GEE+T+ Y+ DMLM
Sbjct: 233 LYPSISLLNHSCDPNCSIVFNGP----HLLLRAVRDIEVGEELTICYL-----DMLM 280
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 274 LIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYM 321
L P +LNHS PNC + +++ A + + GEE+T+ Y+
Sbjct: 198 LYPSISLLNHSCDPNCSIVFNGP----HLLLRAVRDIEVGEELTICYL 241
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b
Length = 346
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 309 HVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQF--SGDARIHL---DSFLSVFN 363
H RR E + + MN++LM+ + W+ Q G + HL +FL +
Sbjct: 235 HFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWR 294
Query: 364 ISGLPEEYYHNIIAAARTLPT--WSDGDVPLV 393
L EE + ++ + LPT W + ++ L+
Sbjct: 295 KEILDEEDFQGLLMLLQNLPTIHWGNEEIGLL 326
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 243 PERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEV 302
P+ V AQ C + L + + P ++NHS PN +K + E
Sbjct: 167 PDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIV--TYKGTLAE- 223
Query: 303 MVNAGQHVRRGEEMTVNYMH-----GQMNDMLMQRYGFSS 337
V A Q ++ GEE+ +Y+ ND L Y F+
Sbjct: 224 -VRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTC 262
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 243 PERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEV 302
P+ V AQ C + L + + P ++NHS PN +K + E
Sbjct: 167 PDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIV--TYKGTLAE- 223
Query: 303 MVNAGQHVRRGEEMTVNYMH-----GQMNDMLMQRYGFSS 337
V A Q ++ GEE+ +Y+ ND L Y F+
Sbjct: 224 -VRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTC 262
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 243 PERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEV 302
P+ V AQ C + L + + P ++NHS PN +K + E
Sbjct: 167 PDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIV--TYKGTLAE- 223
Query: 303 MVNAGQHVRRGEEMTVNYMH-----GQMNDMLMQRYGFSS 337
V A Q ++ GEE+ +Y+ ND L Y F+
Sbjct: 224 -VRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTC 262
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 243 PERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEV 302
P+ V AQ C + L + + P ++NHS PN +K + E
Sbjct: 167 PDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIV--TYKGTLAE- 223
Query: 303 MVNAGQHVRRGEEMTVNYMH-----GQMNDMLMQRYGFSS 337
V A Q + G+E+ +Y+ ND L Y F+
Sbjct: 224 -VRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTC 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,596,254
Number of Sequences: 62578
Number of extensions: 624179
Number of successful extensions: 1273
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 18
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)