Query 012328
Match_columns 466
No_of_seqs 238 out of 1257
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:28:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 2.6E-30 5.6E-35 272.5 22.9 366 74-458 33-447 (472)
2 KOG1338 Uncharacterized conser 99.9 3.8E-27 8.2E-32 229.9 12.8 240 73-337 10-272 (466)
3 PF00856 SET: SET domain; Int 99.7 7.9E-17 1.7E-21 143.6 6.7 53 269-321 110-162 (162)
4 PF09273 Rubis-subs-bind: Rubi 99.2 2.9E-11 6.2E-16 105.0 8.0 78 372-450 35-128 (128)
5 smart00317 SET SET (Su(var)3-9 98.4 4.5E-07 9.8E-12 76.4 4.9 50 271-320 67-116 (116)
6 KOG1085 Predicted methyltransf 96.2 0.0041 9E-08 59.8 3.6 52 278-330 334-385 (392)
7 KOG4442 Clathrin coat binding 95.6 0.014 3.1E-07 62.6 4.7 46 277-322 193-238 (729)
8 KOG2589 Histone tail methylase 95.1 0.019 4.1E-07 57.3 3.4 47 273-323 193-239 (453)
9 KOG1080 Histone H3 (Lys4) meth 94.7 0.031 6.8E-07 63.6 4.4 47 277-323 939-985 (1005)
10 KOG1079 Transcriptional repres 94.3 0.038 8.3E-07 59.1 3.8 46 278-323 666-711 (739)
11 COG2940 Proteins containing SE 89.2 0.19 4.2E-06 53.6 1.8 48 276-323 404-451 (480)
12 KOG1083 Putative transcription 88.4 0.49 1.1E-05 53.4 4.1 45 279-323 1252-1296(1306)
13 smart00317 SET SET (Su(var)3-9 87.1 0.72 1.6E-05 38.1 3.6 36 89-127 2-38 (116)
14 KOG1082 Histone H3 (Lys9) meth 79.4 1.5 3.3E-05 45.0 3.0 47 277-323 272-322 (364)
15 COG1188 Ribosome-associated he 49.1 18 0.00038 29.9 2.8 53 242-323 10-62 (100)
16 KOG1141 Predicted histone meth 48.3 9.9 0.00022 42.3 1.7 57 278-334 1190-1253(1262)
17 KOG2084 Predicted histone tail 40.8 32 0.0007 36.0 4.2 62 270-335 198-265 (482)
18 KOG2461 Transcription factor B 33.5 35 0.00076 35.5 2.9 32 302-334 124-155 (396)
19 KOG1338 Uncharacterized conser 31.3 57 0.0012 33.7 3.8 71 271-347 269-343 (466)
20 KOG1085 Predicted methyltransf 25.1 2.1E+02 0.0046 28.3 6.3 33 86-121 255-288 (392)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=99.97 E-value=2.6e-30 Score=272.54 Aligned_cols=366 Identities=22% Similarity=0.251 Sum_probs=251.1
Q ss_pred CcccccHhh-hcC--CCCeeEeeC-CCccEEEEccCCCcccCCceEEEcccccccccccccCCCCCCCCCCCCchhhhhh
Q 012328 74 DFYKIGYVR-SMR--AYGVEFKEG-PDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDII 149 (466)
Q Consensus 74 ~f~~i~Wl~-~~G--~~~v~i~~~-~~GrGl~A~~dI~~~~~Ge~ll~IP~~~~ls~~~~~~~~~f~~~~~~g~~~~~~~ 149 (466)
.+. .|+. ..+ .++++.... ..|.|+++...+.. |..+...|....++....... .+..+.....
T Consensus 33 g~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 100 (472)
T KOG1337|consen 33 GLV--RWAASESIASSENIKSLKFWLTGNGLSSSKSSLP---GNDIDEWPLLVSIRLIKGEKL-------LLVPPLLLLI 100 (472)
T ss_pred cce--eeeecccCCCccccccceeccccCCcchhhhccc---cccccccchhhhhhhhhhhhh-------ccCCchhhhc
Confidence 455 7777 333 344444333 34777777777654 667777777666665432210 1111111122
Q ss_pred hcCCCCCchh-HHHHHHHHHHh-cCCCChhHHHhhcCCCCCCCCccccCCHHHHhccCCCcHHHHHHHHHHHHHHHHHHh
Q 012328 150 NSTDPETDWD-LRLACLLLYAF-DQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKN 227 (466)
Q Consensus 150 ~~~~~~~~~~-~~Lal~Ll~E~-~g~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~~~~~ 227 (466)
+...+..++. ..|+++++++. .+..|.|.+|+..||..+ .+|++|...++..|++++....+..++..+...+.+.
T Consensus 101 ~~~~~~~~~~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~--~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 178 (472)
T KOG1337|consen 101 AKRKPYNDLLPIALALFLLLEWAHGEISKWKPYISTLPSQY--NSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAEL 178 (472)
T ss_pred cccccCccccHHHHHHHHHHhhhccccccchhhhhhchhhc--CCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHH
Confidence 2222222222 67899999998 566699999999999997 5899999999999999999988887776666643322
Q ss_pred hc--CCCCcccc---ccCCCHHHHHHHHHHhhhccceeccccc---cccCCceeeeeccccCCCCCCCCcceEEeecCCe
Q 012328 228 WH--SGVPLKIK---RLAHDPERFIWAVSIAQSRCINMQVRIG---ALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRM 299 (466)
Q Consensus 228 ~~--~~~p~~~~---~~~~t~e~f~WA~~~V~SRaf~~~~~~~---~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~ 299 (466)
.. ...+..+. ...++++.|.||+++|.||+|+.+.... .......+|+|++||+||+++. +...++..++.
T Consensus 179 ~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~ 257 (472)
T KOG1337|consen 179 LEVLQSHPSLFGSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEA 257 (472)
T ss_pred HHHHHhccccccccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCc
Confidence 21 01111111 1227899999999999999999987631 1235789999999999999987 45566666665
Q ss_pred EEEEEEecccCCCCceEEecCCCCCChHHHHHhCCccCCCCCCCeEEeccCccc---ccchhhhhhhhCCCChhH-----
Q 012328 300 LEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARI---HLDSFLSVFNISGLPEEY----- 371 (466)
Q Consensus 300 ~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YGFv~~~Np~D~v~l~~~~~~---~~d~~l~~l~~~gl~~~~----- 371 (466)
+.+++.++|++|||||||||++ +|++||.+||||.++||+|.|.+...+.. ........+...+++...
T Consensus 258 --~~l~~~~~v~~geevfi~YG~~-~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (472)
T KOG1337|consen 258 --VELVAERDVSAGEEVFINYGPK-SNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSIL 334 (472)
T ss_pred --EEEEEeeeecCCCeEEEecCCC-chHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEe
Confidence 7778999999999999999998 79999999999999999999999764431 001111112222222210
Q ss_pred -----HHHHHHHH---Hhc------------------cCCCCCCCCCCchhHHHHHHHHHHH-HHHHHHcCCCChHHHHH
Q 012328 372 -----YHNIIAAA---RTL------------------PTWSDGDVPLVPSIERKAVKELQEE-CRQMLAEFPTTSKQDQK 424 (466)
Q Consensus 372 -----~~~llaal---Rv~------------------~~~~~~~~p~s~~~E~~~~~~L~~~-~~~~L~~~~TtieeD~~ 424 (466)
....+.+. +.. ..+.....+.+.++|...+..+... |...+..+.+++++|+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 414 (472)
T KOG1337|consen 335 LTGEPVSEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDES 414 (472)
T ss_pred ecCCchhhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhh
Confidence 00111111 111 0111223456678999999999999 88889999999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012328 425 MLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALD 458 (466)
Q Consensus 425 ~L~~~~~~~~~~r~A~~~R~~eK~iL~~~l~~L~ 458 (466)
.+... ..+....++.++|..+|+||.+++..+.
T Consensus 415 vl~~~-~l~~~~~~~~k~~~~~~~iL~~~~~~~~ 447 (472)
T KOG1337|consen 415 VLKDN-ILSKLLELLEKLRTLEKRILEKSLKLLR 447 (472)
T ss_pred hhccc-ccchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88874 5678888999999999999999988776
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=3.8e-27 Score=229.91 Aligned_cols=240 Identities=15% Similarity=0.242 Sum_probs=185.2
Q ss_pred CCcccccHhhhcC----CCCeeEee---CCC--ccEEEEccCCCcccCCceEEEcccccccccccccCCCCCCCCCCCCc
Q 012328 73 PDFYKIGYVRSMR----AYGVEFKE---GPD--GFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGH 143 (466)
Q Consensus 73 ~~f~~i~Wl~~~G----~~~v~i~~---~~~--GrGl~A~~dI~~~~~Ge~ll~IP~~~~ls~~~~~~~~~f~~~~~~g~ 143 (466)
..|. .|++..+ .++|++.. ... |+|++|+++|++ |+.++.+|+++++++.+..-- .++ +
T Consensus 10 ~~fl--~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkk---gE~Lf~~prdsvLsvtts~li------~~l-p 77 (466)
T KOG1338|consen 10 KRFL--LWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKK---GESLFAYPRDSVLSVTTSALI------TPL-P 77 (466)
T ss_pred HHHH--HHHHHhhheeecccccccccchhhhhcccceeeehhhcC---CceEEEecCccEEeeehHHhc------ccc-h
Confidence 3577 9999998 57787766 233 999999999998 899999999999998874310 011 1
Q ss_pred hhhh-hhhcCCCCCchhHHHHHHHHHHhc-CCCChhHHHhhcCCCCCCCCccccCCHHHHhccCCCcHHHHHHHHHHHHH
Q 012328 144 PIFD-IINSTDPETDWDLRLACLLLYAFD-QDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAR 221 (466)
Q Consensus 144 ~~~~-~~~~~~~~~~~~~~Lal~Ll~E~~-g~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~ 221 (466)
...+ .+++ ...| ..|++.|++|.. +.+|+|+||++.+|+..++++|+||+++|+..|..+.+.+...+.+..+.
T Consensus 78 s~~rv~Lne---~gsw-~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~ 153 (466)
T KOG1338|consen 78 SDIRVLLNE---VGSW-GMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIE 153 (466)
T ss_pred HHHHHHhhc---CCcH-HHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHH
Confidence 1222 3332 3468 678899999984 44599999999999999999999999999988766666666888889999
Q ss_pred HHHHHhhc---CCCCccccccCCCHHHHHHHHHHhhhccceecccccc--------ccCCceeeeeccccCCCCCC-CCc
Q 012328 222 EFWEKNWH---SGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGA--------LVQDANMLIPYADMLNHSFQ-PNC 289 (466)
Q Consensus 222 ~~~~~~~~---~~~p~~~~~~~~t~e~f~WA~~~V~SRaf~~~~~~~~--------~~~~~~~LvP~~Dm~NH~~~-~~~ 289 (466)
..|...+. ...|..+ ..+++|+|..+++++.+.+|.+...... .+....+|+|.+||+||+.. .|+
T Consensus 154 ~~~i~~i~pf~~~~p~vf--s~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~na 231 (466)
T KOG1338|consen 154 KDFIFVIQPFKQHCPIVF--SRPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANA 231 (466)
T ss_pred HHHHHHHHHHHHhCcchh--cccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhccc
Confidence 88877653 2334322 2378999999999999999999876321 13467899999999999986 344
Q ss_pred ceEEeecCCeEEEEEEecccCCCCceEEecCCCCCChHHHHHhCCccC
Q 012328 290 FFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSS 337 (466)
Q Consensus 290 ~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YGFv~ 337 (466)
+. ..+++| +.|+|.++|.+|+||+++||-+ +|. |++||.+.
T Consensus 232 nl--~y~~Nc--L~mva~r~iekgdev~n~dg~~-p~~--l~~l~ka~ 272 (466)
T KOG1338|consen 232 NL--RYEDNC--LEMVADRNIEKGDEVDNSDGLK-PMG--LLKLTKAL 272 (466)
T ss_pred ce--eccCcc--eeeeecCCCCCccccccccccC-cch--hhhhhhhc
Confidence 44 456678 5777999999999999999988 677 77777665
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.67 E-value=7.9e-17 Score=143.64 Aligned_cols=53 Identities=38% Similarity=0.670 Sum_probs=43.3
Q ss_pred CCceeeeeccccCCCCCCCCcceEEeecCCeEEEEEEecccCCCCceEEecCC
Q 012328 269 QDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYM 321 (466)
Q Consensus 269 ~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG 321 (466)
....+|+|++||+||++.|||.+.+..+++...+.++|.|+|++|||||++||
T Consensus 110 ~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 110 RDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 46799999999999999999988887422223388899999999999999999
No 4
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.22 E-value=2.9e-11 Score=105.00 Aligned_cols=78 Identities=32% Similarity=0.492 Sum_probs=64.2
Q ss_pred HHHHHHHHHhccC----------------CCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCChHHHHHHHhcCCCCcHH
Q 012328 372 YHNIIAAARTLPT----------------WSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRT 435 (466)
Q Consensus 372 ~~~llaalRv~~~----------------~~~~~~p~s~~~E~~~~~~L~~~~~~~L~~~~TtieeD~~~L~~~~~~~~~ 435 (466)
..++++++|++.+ +.....|.+.+||.+++++|...|..+|+.|+||+|+|+++|++. ....+
T Consensus 35 ~~~Ll~~lRv~~~~~~e~~~~~~~~~~~~~~~~~~~ls~~nE~~~l~~L~~~~~~~L~~y~TtleeD~~~L~~~-~~~~~ 113 (128)
T PF09273_consen 35 PPELLAALRVLLMTEEELRALKSLADSSEWSDRSEPLSPENEIAALQFLIDLCEARLSAYPTTLEEDEELLQSN-DLSSR 113 (128)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHCGTTTHCCHCCC-SBHHHHHHHHHHHHHHHHHHHTTSSS-HHHHHHHCHTC-CCHHH
T ss_pred CHHHHHHHHHHHcChHHHHHHHHhhcccccccccCCCchhhHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHhcC-CCcHH
Confidence 4578999998621 111234678899999999999999999999999999999999984 56677
Q ss_pred HHHHHHHHHHHHHHH
Q 012328 436 LEAAIKYRLHRKLFI 450 (466)
Q Consensus 436 ~r~A~~~R~~eK~iL 450 (466)
+|+|++||++||+||
T Consensus 114 ~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 114 RRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhcC
Confidence 999999999999997
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.37 E-value=4.5e-07 Score=76.38 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=42.6
Q ss_pred ceeeeeccccCCCCCCCCcceEEeecCCeEEEEEEecccCCCCceEEecC
Q 012328 271 ANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNY 320 (466)
Q Consensus 271 ~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isY 320 (466)
...+.|+++++||++.||+.+.+...++...+.++|.|+|++||||+++|
T Consensus 67 ~~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 67 ARRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 34489999999999999998887766554347888999999999999999
No 6
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=96.21 E-value=0.0041 Score=59.83 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=41.7
Q ss_pred cccCCCCCCCCcceEEeecCCeEEEEEEecccCCCCceEEecCCCCCChHHHH
Q 012328 278 ADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 330 (466)
Q Consensus 278 ~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL 330 (466)
.-|+||+..+|+......-++.-.+++.|.++|.+|||++..||++ |.+.++
T Consensus 334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR-Skesi~ 385 (392)
T KOG1085|consen 334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR-SKESIA 385 (392)
T ss_pred hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc-chhHHh
Confidence 3489999999987665554454558899999999999999999998 666554
No 7
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=0.014 Score=62.62 Aligned_cols=46 Identities=30% Similarity=0.390 Sum_probs=36.9
Q ss_pred ccccCCCCCCCCcceEEeecCCeEEEEEEecccCCCCceEEecCCC
Q 012328 277 YADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMH 322 (466)
Q Consensus 277 ~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~ 322 (466)
++=++||+++|||.+.--...+...|-+.+.+.|++||||+..|+-
T Consensus 193 laRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf 238 (729)
T KOG4442|consen 193 LARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQF 238 (729)
T ss_pred HHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccc
Confidence 4568999999999875333344666788899999999999999874
No 8
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=95.07 E-value=0.019 Score=57.26 Aligned_cols=47 Identities=36% Similarity=0.541 Sum_probs=35.3
Q ss_pred eeeeccccCCCCCCCCcceEEeecCCeEEEEEEecccCCCCceEEecCCCC
Q 012328 273 MLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 323 (466)
Q Consensus 273 ~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 323 (466)
-|=| +-++||+..|||++ ...++ ....|++.|||++||||+--||..
T Consensus 193 wLGP-aafINHDCrpnCkF--vs~g~-~tacvkvlRDIePGeEITcFYgs~ 239 (453)
T KOG2589|consen 193 WLGP-AAFINHDCRPNCKF--VSTGR-DTACVKVLRDIEPGEEITCFYGSG 239 (453)
T ss_pred eecc-HHhhcCCCCCCcee--ecCCC-ceeeeehhhcCCCCceeEEeeccc
Confidence 3344 45899999999864 33332 126788999999999999999973
No 9
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=94.70 E-value=0.031 Score=63.60 Aligned_cols=47 Identities=26% Similarity=0.477 Sum_probs=39.9
Q ss_pred ccccCCCCCCCCcceEEeecCCeEEEEEEecccCCCCceEEecCCCC
Q 012328 277 YADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 323 (466)
Q Consensus 277 ~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 323 (466)
++=++||+.+|||....-..++...++++|.|+|.+||||+..|-.-
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~ 985 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFP 985 (1005)
T ss_pred hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccc
Confidence 56689999999998766665666679999999999999999999853
No 10
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=94.35 E-value=0.038 Score=59.14 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=35.7
Q ss_pred cccCCCCCCCCcceEEeecCCeEEEEEEecccCCCCceEEecCCCC
Q 012328 278 ADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 323 (466)
Q Consensus 278 ~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 323 (466)
+-++||+.+|||....-...+.-.+-+.|.|.|.+|||||..|+-.
T Consensus 666 ~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 666 IRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred hhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccC
Confidence 4489999999996655444333337788999999999999999853
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=89.25 E-value=0.19 Score=53.57 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=37.2
Q ss_pred eccccCCCCCCCCcceEEeecCCeEEEEEEecccCCCCceEEecCCCC
Q 012328 276 PYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 323 (466)
Q Consensus 276 P~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 323 (466)
.+.=++||+..||+........+-..+..++.++|++||||++.||..
T Consensus 404 ~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~ 451 (480)
T COG2940 404 DVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPS 451 (480)
T ss_pred cccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccc
Confidence 344489999999987655444333347778999999999999999975
No 12
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=88.41 E-value=0.49 Score=53.39 Aligned_cols=45 Identities=29% Similarity=0.411 Sum_probs=36.3
Q ss_pred ccCCCCCCCCcceEEeecCCeEEEEEEecccCCCCceEEecCCCC
Q 012328 279 DMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 323 (466)
Q Consensus 279 Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 323 (466)
-+.||+..+||...--..+|.+.+.|.|.++|.+||||+..|..+
T Consensus 1252 RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1252 RFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred cccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecccc
Confidence 367999999997643333455678889999999999999999876
No 13
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=87.10 E-value=0.72 Score=38.06 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=27.8
Q ss_pred eeEeeCCC-ccEEEEccCCCcccCCceEEEcccccccccc
Q 012328 89 VEFKEGPD-GFGVFASKDIEPRRRARLVMQIPLELMLTIR 127 (466)
Q Consensus 89 v~i~~~~~-GrGl~A~~dI~~~~~Ge~ll~IP~~~~ls~~ 127 (466)
+++...+. |+||+|+++|++ |++|+..+-..+....
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~---g~~i~~~~g~~~~~~~ 38 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPK---GEFIGEYVGEIITSEE 38 (116)
T ss_pred cEEEecCCCcEEEEECCccCC---CCEEEEEEeEEECHHH
Confidence 34445554 999999999998 8999998887766543
No 14
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=79.43 E-value=1.5 Score=44.99 Aligned_cols=47 Identities=32% Similarity=0.509 Sum_probs=35.0
Q ss_pred ccccCCCCCCCCcceEEeecC----CeEEEEEEecccCCCCceEEecCCCC
Q 012328 277 YADMLNHSFQPNCFFHWRFKD----RMLEVMVNAGQHVRRGEEMTVNYMHG 323 (466)
Q Consensus 277 ~~Dm~NH~~~~~~~~~~~~~~----~~~~~~l~a~r~i~~GeEv~isYG~~ 323 (466)
+.=++||+..||..+.....+ ....+.+.+.++|.+|+|++..||..
T Consensus 272 v~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~ 322 (364)
T KOG1082|consen 272 VARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKA 322 (364)
T ss_pred ccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccc
Confidence 455899999998755332222 12346778999999999999999976
No 15
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=49.11 E-value=18 Score=29.95 Aligned_cols=53 Identities=13% Similarity=0.325 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHhhhccceeccccccccCCceeeeeccccCCCCCCCCcceEEeecCCeEEEEEEecccCCCCceEEecCC
Q 012328 242 DPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYM 321 (466)
Q Consensus 242 t~e~f~WA~~~V~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG 321 (466)
-.+.|+|+.-++-+|+..-...++ -.+.++ + -...+.+.++.|++|.+.||
T Consensus 10 RLDKwL~~aR~~KrRslAk~~~~~-----------------------GrV~vN---G---~~aKpS~~VK~GD~l~i~~~ 60 (100)
T COG1188 10 RLDKWLWAARFIKRRSLAKEMIEG-----------------------GRVKVN---G---QRAKPSKEVKVGDILTIRFG 60 (100)
T ss_pred ehHHHHHHHHHhhhHHHHHHHHHC-----------------------CeEEEC---C---EEcccccccCCCCEEEEEeC
Confidence 478999999999999987654321 123332 2 23378899999999999999
Q ss_pred CC
Q 012328 322 HG 323 (466)
Q Consensus 322 ~~ 323 (466)
.+
T Consensus 61 ~~ 62 (100)
T COG1188 61 NK 62 (100)
T ss_pred Cc
Confidence 86
No 16
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=48.33 E-value=9.9 Score=42.35 Aligned_cols=57 Identities=28% Similarity=0.321 Sum_probs=36.5
Q ss_pred cccCCCCCCCCcceE---EeecCCeE-EEEEEecccCCCCceEEecCCCCC---ChHHHHHhCC
Q 012328 278 ADMLNHSFQPNCFFH---WRFKDRML-EVMVNAGQHVRRGEEMTVNYMHGQ---MNDMLMQRYG 334 (466)
Q Consensus 278 ~Dm~NH~~~~~~~~~---~~~~~~~~-~~~l~a~r~i~~GeEv~isYG~~~---sN~~LL~~YG 334 (466)
.-++||+..||..+. ++..+-.+ -|.+.+.+-|++|.|++-.|+-.. ...+|+..-|
T Consensus 1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CG 1253 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCG 1253 (1262)
T ss_pred hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecC
Confidence 448999999997553 22222111 145568899999999999998431 2344544444
No 17
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=40.78 E-value=32 Score=35.98 Aligned_cols=62 Identities=26% Similarity=0.281 Sum_probs=44.0
Q ss_pred CceeeeeccccCCCCCCCCcceEEeecCCeEEEEEEecccCCCCc-eEEecCCCCC-----ChHHHHHhCCc
Q 012328 270 DANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGE-EMTVNYMHGQ-----MNDMLMQRYGF 335 (466)
Q Consensus 270 ~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~Ge-Ev~isYG~~~-----sN~~LL~~YGF 335 (466)
...+|.|..=++||+..||+.+.++. .. ..+.+...+.+++ +++++|-... -...|...|.|
T Consensus 198 ~~~~l~~~~~~~~hsC~pn~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f 265 (482)
T KOG2084|consen 198 LGRGLFPGSSLFNHSCFPNISVIFDG--RG--LALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLF 265 (482)
T ss_pred ceeeecccchhcccCCCCCeEEEECC--ce--eEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccce
Confidence 46889999999999999998755543 33 3445667777766 9999999641 13446666667
No 18
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=33.55 E-value=35 Score=35.51 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=27.7
Q ss_pred EEEEecccCCCCceEEecCCCCCChHHHHHhCC
Q 012328 302 VMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYG 334 (466)
Q Consensus 302 ~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YG 334 (466)
+-.++.|+|++||||.+-||... +.+|...+|
T Consensus 124 Ifyrt~r~I~p~eELlVWY~~e~-~~~L~~~~~ 155 (396)
T KOG2461|consen 124 IFYRTIRDIRPNEELLVWYGSEY-AEELAYGHG 155 (396)
T ss_pred eEEEecccCCCCCeEEEEeccch-HhHhcccCC
Confidence 55679999999999999999984 888887777
No 19
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.25 E-value=57 Score=33.65 Aligned_cols=71 Identities=8% Similarity=-0.072 Sum_probs=51.2
Q ss_pred ceeeeeccccCCCCCC-CC-cceEEeecCCeEEEEEEecccCCCCceEEecCCCCCChHHHHHhCCc-cC-CCCCCCeEE
Q 012328 271 ANMLIPYADMLNHSFQ-PN-CFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGF-SS-PVNPWNVIQ 346 (466)
Q Consensus 271 ~~~LvP~~Dm~NH~~~-~~-~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YGF-v~-~~Np~D~v~ 346 (466)
..+++|+.+|+|.... .| +.+-++..++ ..+++.|.| |+++.+.|+.. .+.++...||| +- +.-|++.+-
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~~d---~tm~~~R~i--l~ql~nt~tel-d~~e~~~syd~ftkkE~~p~~g~l 342 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVPND---DTMRNMRLI--LLQLHNTRTEL-DINEFHSSYDTFTKKEVKPAIGKL 342 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCCCc---chHHHHHHH--HHHhccchhhh-hhHHHHHhhhhhhhccccccceee
Confidence 6899999999988764 11 1122333222 466788888 99999999999 49999999995 44 467888755
Q ss_pred e
Q 012328 347 F 347 (466)
Q Consensus 347 l 347 (466)
+
T Consensus 343 v 343 (466)
T KOG1338|consen 343 V 343 (466)
T ss_pred e
Confidence 5
No 20
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=25.10 E-value=2.1e+02 Score=28.33 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=24.4
Q ss_pred CCCeeEeeCC-CccEEEEccCCCcccCCceEEEcccc
Q 012328 86 AYGVEFKEGP-DGFGVFASKDIEPRRRARLVMQIPLE 121 (466)
Q Consensus 86 ~~~v~i~~~~-~GrGl~A~~dI~~~~~Ge~ll~IP~~ 121 (466)
..++.+.... .||||+|+..++. |+.|++--=.
T Consensus 255 ~egl~~~~~dgKGRGv~a~~~F~r---gdFVVEY~Gd 288 (392)
T KOG1085|consen 255 NEGLLEVYKDGKGRGVRAKVNFER---GDFVVEYRGD 288 (392)
T ss_pred ccceeEEeeccccceeEeeccccc---CceEEEEecc
Confidence 3556666644 5999999999996 8888875433
Done!