Query 012329
Match_columns 466
No_of_seqs 126 out of 179
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 07:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpp_A IWS1, ECU08_0440; trans 100.0 2.3E-52 8E-57 375.9 13.9 144 252-401 1-144 (145)
2 3nfq_A Transcription factor IW 100.0 2.1E-51 7.1E-56 378.2 14.7 155 247-407 3-165 (170)
3 1wjt_A Transcription elongatio 97.8 1E-05 3.5E-10 69.1 3.2 54 337-397 35-88 (103)
4 1pqv_S STP-alpha, transcriptio 97.4 0.00012 4.1E-09 72.4 4.9 55 337-399 25-80 (309)
5 1juq_A ADP-ribosylation factor 61.8 59 0.002 29.3 10.2 60 285-345 67-126 (171)
6 2kkm_A Translation machinery-a 57.7 25 0.00087 31.2 7.0 78 250-332 43-124 (144)
7 3tpo_A Importin subunit alpha- 42.5 49 0.0017 33.3 7.0 80 304-391 412-495 (529)
8 4hxt_A De novo protein OR329; 41.0 1.7E+02 0.0057 24.9 9.3 80 303-392 35-114 (252)
9 4hxt_A De novo protein OR329; 40.5 1.7E+02 0.0058 24.8 9.5 82 302-393 160-241 (252)
10 4b8j_A Importin subunit alpha- 37.1 1.7E+02 0.0059 28.7 9.9 82 303-392 405-495 (528)
11 3ul1_B Importin subunit alpha- 36.0 1.1E+02 0.0038 30.6 8.5 81 304-392 393-477 (510)
12 4db6_A Armadillo repeat protei 34.1 1.1E+02 0.0039 25.7 7.1 79 303-391 129-207 (210)
13 1mhq_A ADP-ribosylation factor 32.2 2.6E+02 0.0088 24.5 10.5 59 286-345 56-114 (148)
14 1jdh_A Beta-catenin; beta-cate 29.0 2.4E+02 0.0084 27.1 9.3 81 299-390 447-527 (529)
15 4db8_A Armadillo-repeat protei 26.5 3.1E+02 0.011 23.6 9.6 81 301-392 85-166 (252)
16 3eg5_B Protein diaphanous homo 23.3 64 0.0022 32.3 4.2 94 291-389 87-187 (383)
17 4db8_A Armadillo-repeat protei 21.7 3.8E+02 0.013 23.0 9.5 76 305-390 47-122 (252)
18 3g2s_A C-terminal fragment of 20.1 2E+02 0.0069 25.3 6.2 60 285-345 65-124 (149)
No 1
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=100.00 E-value=2.3e-52 Score=375.92 Aligned_cols=144 Identities=34% Similarity=0.637 Sum_probs=135.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCC
Q 012329 252 KSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPN 331 (466)
Q Consensus 252 ~s~~Ei~~iv~~Ll~~M~~AAeeD~eank~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPn 331 (466)
++++||.++|.+|+.+|..||++|.++|++++|||+||+|||+|+.+|+|.+||.+||++|+|++|+.||+|||||||||
T Consensus 1 ~~~~e~~~~~~~l~~~M~~Aa~~D~~a~~~~~PA~~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~ 80 (145)
T 2xpp_A 1 MDPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPN 80 (145)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhhhcCCcc
Q 012329 332 INIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTR 401 (466)
Q Consensus 332 l~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~~~ss~ 401 (466)
++||+.||++|.+|||++ +||++||||||||||++||+||++||++|++||++|+||||++|++
T Consensus 81 ~~Ir~~lL~~L~~lPI~~------e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi~~~s~~ 144 (145)
T 2xpp_A 81 IKIRKRLLDVLKTMKIHK------EHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVFKPEGG 144 (145)
T ss_dssp HHHHHHHHHHHHTSCCCH------HHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHCCCCH------HHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999974 7999999999999999999999999999999999999999999874
No 2
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=100.00 E-value=2.1e-51 Score=378.20 Aligned_cols=155 Identities=33% Similarity=0.630 Sum_probs=131.4
Q ss_pred ccccCCCH-HHHHHHHHHHHHHHHHHHHHHHHH-Hh------cCChHHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHH
Q 012329 247 RKKNEKSP-AEIALLVENVMAELEVTAEEDAEL-NR------QGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLK 318 (466)
Q Consensus 247 KKk~~~s~-~Ei~~iv~~Ll~~M~~AAeeD~ea-nk------~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk 318 (466)
||+.+.+. ...++.|.+|+.+|..||++|.++ |+ +++|||+||+|||+|+.+|+|.+||.+||++|+|++|+
T Consensus 3 ~~~~~~dl~~~~Dd~i~~L~~~M~~Aa~~D~~~~n~~~~~~~~~~PAl~KLkmL~~V~~~L~k~~L~~~~ld~giL~~l~ 82 (170)
T 3nfq_A 3 TRRDEDDLEQYLDEKILRLKDEMNIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVR 82 (170)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHTCGGGHHHHHHTTHHHHHH
T ss_pred ccchhhhHHHhhhHHHHHHHHHHHHHHHHhHHHHHhhhccccccccHHHHHhhHHHHHHHHhHHHHHHHHHHcchHHHHH
Confidence 44455555 556679999999999999999875 43 57999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhhhcC
Q 012329 319 NWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNK 398 (466)
Q Consensus 319 ~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~~~ 398 (466)
.||+||||||||||+||+.||++|.+|||++ +||++||||||||||++||+||++||++|.+||++||||||++
T Consensus 83 ~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~~------e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsRpI~~~ 156 (170)
T 3nfq_A 83 IWLEPLPDGSLPSFEIQKSLFAALNDLPVKT------EHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPIIGA 156 (170)
T ss_dssp HHHSCCTTSCCCCHHHHHHHHHHHHTSCCCH------HHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTCCCC--
T ss_pred HHhCcCCCCCCCcHHHHHHHHHHHHHCCCCH------HHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999964 7999999999999999999999999999999999999999999
Q ss_pred Ccccccchh
Q 012329 399 STRFEDMKT 407 (466)
Q Consensus 399 ss~Y~d~~~ 407 (466)
|++|++++.
T Consensus 157 s~~y~~~~~ 165 (170)
T 3nfq_A 157 SDNYRDKRI 165 (170)
T ss_dssp ---------
T ss_pred Ccchhhhhh
Confidence 999999665
No 3
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=97.79 E-value=1e-05 Score=69.14 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=47.0
Q ss_pred HHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhhhc
Q 012329 337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFN 397 (466)
Q Consensus 337 ~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~~ 397 (466)
.+|+.|..|||+. +.|++++||++|..|+|| ...++++.+|+.||.+|...|-.
T Consensus 35 ~~L~~L~~~~iT~------e~L~~T~IGk~Vn~LrKh-~~~~~V~~lAk~Lv~~WK~~v~~ 88 (103)
T 1wjt_A 35 DLLKKLNSCQMSI------QLLQTTRIGVAVNGVRKH-CSDKEVVSLAKVLIKNWKRLLDS 88 (103)
T ss_dssp HHHHHHHTSCCCH------HHHHHTCHHHHHHHHHHH-CCCSHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCCH------HHHHHcchhHHHHHHHcc-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999854 799999999999999998 24568899999999999998865
No 4
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=97.38 E-value=0.00012 Score=72.39 Aligned_cols=55 Identities=25% Similarity=0.419 Sum_probs=45.7
Q ss_pred HHHHHH-hcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhhhcCC
Q 012329 337 AILKIL-TEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKS 399 (466)
Q Consensus 337 ~LLkiL-~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~~~s 399 (466)
.+|+.| ..+||+. +.|++++||++|..|.|| ..++++.+|+.||.+|.+.|....
T Consensus 25 ~~L~~L~~~~~it~------~~L~~T~IG~~Vn~lrkh--~~~~v~~~Ak~Li~~WK~~v~~~~ 80 (309)
T 1pqv_S 25 EILHVLDKEFVPTE------KLLRETKVGVEVNKFKKS--TNVEISKLVKKMISSWKDAINKNK 80 (309)
T ss_pred HHHHHHHhcCCCCH------HHHHhCChhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555 5559854 799999999999999999 455899999999999999987653
No 5
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=61.82 E-value=59 Score=29.29 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=46.8
Q ss_pred HHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcC
Q 012329 285 AINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEF 345 (466)
Q Consensus 285 Al~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~L 345 (466)
++.-|.+|..++.-|- ..+|..+-...+|+.|...+.|-++++-.+..||+.+|.+|...
T Consensus 67 ql~AL~LLd~~vkNCG-~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 67 ALQALTVLEACMKNCG-RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHHSH-HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 3445555555554332 46788888999999999999998888888899999999999876
No 6
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=57.74 E-value=25 Score=31.24 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=54.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhHHHHHHHhhHhH----HHHHHhhhhHHHHHHhhccCC
Q 012329 250 NEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQL----QQEFLDHGVLTLLKNWLEPLP 325 (466)
Q Consensus 250 ~~~s~~Ei~~iv~~Ll~~M~~AAeeD~eank~gkPAl~KLkmLpeV~~~L~K~~L----q~~fLD~GiL~vLk~WLePLP 325 (466)
...+.+|+..+|...|.+-..=.++=....+.|+|+.++..+|...+....+..= .+-|.+..-+..|+.|
T Consensus 43 ~~~t~~e~~~lI~~yl~R~d~ELeql~~~rR~gRp~s~Re~~L~~~~~~E~~ey~tG~~iPDLtd~~nvk~Lr~W----- 117 (144)
T 2kkm_A 43 PIFDHAHTREFIQSFIERDDTELDELKKKRRSNRPPSNRQVLLQQRRDQELKEFKAGFLCPDLSDAKNMEFLRNW----- 117 (144)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCCTTHHHHHHHHHHHHHHHHHTTEEEECSCCHHHHHHHHTC-----
T ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHccCccCCCCCCHHHHHHHHHc-----
Confidence 3588999999999988776555444344577899999999999887776443211 1114455678889999
Q ss_pred CCCCCCH
Q 012329 326 DGSLPNI 332 (466)
Q Consensus 326 DgSLPnl 332 (466)
||++-.+
T Consensus 118 ~G~~~~l 124 (144)
T 2kkm_A 118 NGTFGLL 124 (144)
T ss_dssp SSCSTHH
T ss_pred CCChhcC
Confidence 6775443
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=42.47 E-value=49 Score=33.28 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=58.1
Q ss_pred HHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCC----CccccchHHHHhhcCcccchhhhccCchhcHH
Q 012329 304 LQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI----DLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379 (466)
Q Consensus 304 Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPI----d~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~e 379 (466)
....|++.|++..|-.-|. -++-.|+..+|.+|.++=- ..+...-+..+.++|.=..|..|..|+ ..+
T Consensus 412 ~~~~l~~~g~i~~L~~LL~------~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~--n~~ 483 (529)
T 3tpo_A 412 QIVYLVHCGIIEPLMNLLS------AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE--NES 483 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGG------CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCS--SHH
T ss_pred HHHHHHHCcCHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCC--CHH
Confidence 3456889999999998885 3577899998888877620 001000134577888888888898886 457
Q ss_pred HHHHHHHHHHHh
Q 012329 380 NRKLAKDLVDKW 391 (466)
Q Consensus 380 NKrlA~~LI~kW 391 (466)
+..+|..||++|
T Consensus 484 i~~~A~~iie~y 495 (529)
T 3tpo_A 484 VYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889999999997
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=41.02 E-value=1.7e+02 Score=24.90 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=59.0
Q ss_pred hHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHH
Q 012329 303 QLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRK 382 (466)
Q Consensus 303 ~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKr 382 (466)
.....+++.|++..|-..|.- ++..+|...+.+|.+|-.... ..+..+..+|+-..++-+-++ ..+..+.
T Consensus 35 ~~~~~~~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~ll~~--~~~~v~~ 104 (252)
T 4hxt_A 35 SAIKAIVDAGGVEVLVKLLTS------TDSEVQKEAARALANIASGPD--EAIKAIVDAGGVEVLVKLLTS--TDSEVQK 104 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHTTC--SSHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC------CCHHHHHHHHHHHHHHHcCCh--HHHHHHHHCCCHHHHHHHHcC--CCHHHHH
Confidence 367788999999999999874 468999999999999986522 346777777766666655554 3467777
Q ss_pred HHHHHHHHhh
Q 012329 383 LAKDLVDKWS 392 (466)
Q Consensus 383 lA~~LI~kWS 392 (466)
.|-..+...+
T Consensus 105 ~a~~~L~~l~ 114 (252)
T 4hxt_A 105 EAARALANIA 114 (252)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 9
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=40.51 E-value=1.7e+02 Score=24.85 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=61.4
Q ss_pred HhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHH
Q 012329 302 KQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381 (466)
Q Consensus 302 ~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNK 381 (466)
......+++.|++..|-..|.. ++..+|...+.+|.+|-.... ..+..|.++|+=..++.+-+++ .+..+
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~~~~i~~L~~ll~~~--~~~v~ 229 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTS------TDSEVQKEAARALANIASGPT--SAIKAIVDAGGVEVLQKLLTST--DSEVQ 229 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSBH--HHHHHHHHTTHHHHHHHGGGCS--CHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCC------CCHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHCCC--cHHHH
Confidence 4445678899999999999872 557999999999999975322 2356788888877777777654 45788
Q ss_pred HHHHHHHHHhhh
Q 012329 382 KLAKDLVDKWSR 393 (466)
Q Consensus 382 rlA~~LI~kWSR 393 (466)
..|-..+..-..
T Consensus 230 ~~a~~~L~~l~~ 241 (252)
T 4hxt_A 230 KEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 888888865444
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=37.13 E-value=1.7e+02 Score=28.70 Aligned_cols=82 Identities=16% Similarity=0.092 Sum_probs=56.3
Q ss_pred hHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccc---------cchHHHHhhcCcccchhhhccC
Q 012329 303 QLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQ---------FDRREQLKKSGLGKVIMFLSKS 373 (466)
Q Consensus 303 ~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~---------~d~rE~LK~SGLGKVVmfL~K~ 373 (466)
.....|++.|++..|-.-|.- ++..|+...+.+|.+|=-..+. ..-...|.++|.-..+..|..|
T Consensus 405 ~~~~~l~~~~~i~~L~~lL~~------~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~ 478 (528)
T 4b8j_A 405 DQIKYLVSEGCIKPLCDLLIC------PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSH 478 (528)
T ss_dssp HHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcC
Confidence 344556677777777766643 5678999999998887210000 0024678888877888888877
Q ss_pred chhcHHHHHHHHHHHHHhh
Q 012329 374 DEETTSNRKLAKDLVDKWS 392 (466)
Q Consensus 374 p~ET~eNKrlA~~LI~kWS 392 (466)
+ .++++..|..|+++..
T Consensus 479 ~--~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 479 D--NNEIYEKAVKILEAYW 495 (528)
T ss_dssp S--SHHHHHHHHHHHHHHC
T ss_pred C--CHHHHHHHHHHHHHHC
Confidence 6 4568999999998643
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=36.05 E-value=1.1e+02 Score=30.61 Aligned_cols=81 Identities=20% Similarity=0.176 Sum_probs=58.5
Q ss_pred HHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCC----CccccchHHHHhhcCcccchhhhccCchhcHH
Q 012329 304 LQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI----DLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379 (466)
Q Consensus 304 Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPI----d~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~e 379 (466)
....|++.|++..|-.-|. -++..|+..+|.+|.++=- ......-+..+.++|.=..|-.|..|+.+ +
T Consensus 393 ~~~~L~~~g~i~~L~~LL~------~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~--~ 464 (510)
T 3ul1_B 393 QIVYLVHCGIIEPLMNLLS------AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENE--S 464 (510)
T ss_dssp HHHHHHHTTCHHHHHHGGG------CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSH--H
T ss_pred HHHHHHHCCCHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCH--H
Confidence 3456889999999998885 3567899999888876510 00000113457788888888899888654 6
Q ss_pred HHHHHHHHHHHhh
Q 012329 380 NRKLAKDLVDKWS 392 (466)
Q Consensus 380 NKrlA~~LI~kWS 392 (466)
+.++|..||+++-
T Consensus 465 i~~~A~~iie~yf 477 (510)
T 3ul1_B 465 VYKASLNLIEKYF 477 (510)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC
Confidence 8889999999874
No 12
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=34.10 E-value=1.1e+02 Score=25.66 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=58.3
Q ss_pred hHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHH
Q 012329 303 QLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRK 382 (466)
Q Consensus 303 ~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKr 382 (466)
.....+++.|++..|-..|.- ++..+|...+.+|.+|-.... ..+..+.+.|+-..++.+-.+ ..+.+++
T Consensus 129 ~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~--~~~~~~~~~g~i~~L~~ll~~--~~~~v~~ 198 (210)
T 4db6_A 129 EQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGN--EQKQAVKEAGALEKLEQLQSH--ENEKIQK 198 (210)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHHHHGGGC--SCHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCCc--HHHHHHHHCCCHHHHHHHHhC--CCHHHHH
Confidence 344568889999999988863 578999999999999854321 246678888876666666655 5677888
Q ss_pred HHHHHHHHh
Q 012329 383 LAKDLVDKW 391 (466)
Q Consensus 383 lA~~LI~kW 391 (466)
.|-..+...
T Consensus 199 ~a~~aL~~l 207 (210)
T 4db6_A 199 EAQEALEKL 207 (210)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 13
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=32.22 E-value=2.6e+02 Score=24.47 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=42.7
Q ss_pred HHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcC
Q 012329 286 INKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEF 345 (466)
Q Consensus 286 l~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~L 345 (466)
+.-|.+|..++.-|- ..+|..+-...+|+.|...+.|=-+|+-++..||+.+|.+|...
T Consensus 56 l~AL~LLe~~vkNCG-~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 56 LYALTVLEMCMNHCG-EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHSC-HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 344444444444322 46888899999999999988874445567789999999999875
No 14
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=29.04 E-value=2.4e+02 Score=27.09 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=60.9
Q ss_pred HhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcH
Q 012329 299 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETT 378 (466)
Q Consensus 299 L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~ 378 (466)
+.-...+..|.+.|++..|-.-|.- ++.+|++....+|.+|--+. ..+..+.++|.-..++.|..|+ .+
T Consensus 447 ~~~~~~~~~l~~~~~v~~l~~ll~~------~~~~v~~~a~~~l~~l~~~~---~~~~~i~~~~~~~~L~~l~~~~--~~ 515 (529)
T 1jdh_A 447 ARDVHNRIVIRGLNTIPLFVQLLYS------PIENIQRVAAGVLCELAQDK---EAAEAIEAEGATAPLTELLHSR--NE 515 (529)
T ss_dssp TTSHHHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSH---HHHHHHHHTTCHHHHHHGGGCS--SH
T ss_pred hcCchHHHHHhccCCccHHHHHHcC------CchHHHHHHHHHHHHHhcCH---HHHHHHHHcCChHHHHHHhcCC--CH
Confidence 3345556778899999888777752 46789999999999886432 2367888888888888888765 66
Q ss_pred HHHHHHHHHHHH
Q 012329 379 SNRKLAKDLVDK 390 (466)
Q Consensus 379 eNKrlA~~LI~k 390 (466)
+++..|..++.+
T Consensus 516 ~v~~~a~~aL~~ 527 (529)
T 1jdh_A 516 GVATYAAAVLFR 527 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 788888888765
No 15
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=26.46 E-value=3.1e+02 Score=23.57 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=58.4
Q ss_pred hHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchH-HHHhhcCcccchhhhccCchhcHH
Q 012329 301 KKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRR-EQLKKSGLGKVIMFLSKSDEETTS 379 (466)
Q Consensus 301 K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~r-E~LK~SGLGKVVmfL~K~p~ET~e 379 (466)
....+..+++.|++..|-..|.- |+..+|...+.+|.+|-...+ .+ ..+..+|+=..++-+-+++ .+.
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~lL~~~--~~~ 153 (252)
T 4db8_A 85 GNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGN---EQIQAVIDAGALPALVQLLSSP--NEQ 153 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHGGGCS--CHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCc---hHHHHHHHCCCHHHHHHHHhCC--CHH
Confidence 35667888999999999998864 678999999999999965432 23 5677776666665555554 556
Q ss_pred HHHHHHHHHHHhh
Q 012329 380 NRKLAKDLVDKWS 392 (466)
Q Consensus 380 NKrlA~~LI~kWS 392 (466)
.+..|-..+..-+
T Consensus 154 v~~~a~~~L~~l~ 166 (252)
T 4db8_A 154 ILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 6777766665444
No 16
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=23.28 E-value=64 Score=32.32 Aligned_cols=94 Identities=18% Similarity=0.061 Sum_probs=54.5
Q ss_pred hhHHHHHHHhh--HhHHHHHHhhhhHHHHHHhhccCCCCC-----CCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCc
Q 012329 291 KLSLLTEVLSK--KQLQQEFLDHGVLTLLKNWLEPLPDGS-----LPNINIRAAILKILTEFPIDLEQFDRREQLKKSGL 363 (466)
Q Consensus 291 mLpeV~~~L~K--~~Lq~~fLD~GiL~vLk~WLePLPDgS-----LPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGL 363 (466)
.|..+.-.|+. ..|...|+ ++.+.+|..+|.-+.... -....++..+++||..+= +...+. ...|.....
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~-~~vl~~~~~ 163 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGI-KTMLETEEG 163 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHH-HHHHTCSSH
T ss_pred HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhH-HHHHcChHH
Confidence 45555555654 58889998 778899999998764333 235789999999998773 221111 123333322
Q ss_pred ccchhhhccCchhcHHHHHHHHHHHH
Q 012329 364 GKVIMFLSKSDEETTSNRKLAKDLVD 389 (466)
Q Consensus 364 GKVVmfL~K~p~ET~eNKrlA~~LI~ 389 (466)
=..|... --...+..+..|-+|+.
T Consensus 164 i~~l~~~--L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 164 ILLLVRA--MDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHT--CCTTSHHHHHHHHHHHH
T ss_pred HHHHHHH--hCCCchHHHHHHHHHHH
Confidence 2222221 12344566777777764
No 17
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=21.70 E-value=3.8e+02 Score=22.96 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=53.8
Q ss_pred HHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHH
Q 012329 305 QQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLA 384 (466)
Q Consensus 305 q~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA 384 (466)
...+++.|++..|-..|.. ++..+|...+.+|.+|-.... ..+..+..+|+-..++-+-+++ .+..+..|
T Consensus 47 ~~~~~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a 116 (252)
T 4db8_A 47 IQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGN--EQIQAVIDAGALPALVQLLSSP--NEQILQEA 116 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHGGGCS--CHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCH--HHHHHHHHcCCHHHHHHHHcCC--CHHHHHHH
Confidence 3568888999999888863 347899999999999976321 2467777777666666666564 46677666
Q ss_pred HHHHHH
Q 012329 385 KDLVDK 390 (466)
Q Consensus 385 ~~LI~k 390 (466)
-..+..
T Consensus 117 ~~~L~~ 122 (252)
T 4db8_A 117 LWALSN 122 (252)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 18
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=20.07 E-value=2e+02 Score=25.34 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=41.7
Q ss_pred HHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcC
Q 012329 285 AINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEF 345 (466)
Q Consensus 285 Al~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~L 345 (466)
++.-|.+|..++.-+ -..+|..+-...+|+.|..-+.|=-+|+-++..||+.+|.+|...
T Consensus 65 ~l~AL~LLe~cvkNC-G~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 65 AIQALTVLETCMKSC-GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHHC-CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 344444455444432 245677788888888888888874345567899999999999765
Done!