Query         012330
Match_columns 466
No_of_seqs    160 out of 1902
Neff          11.4
Searched_HMMs 46136
Date          Fri Mar 29 01:30:08 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012330hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG0156 Cytochrome P450 CYP2 s 100.0   1E-73 2.2E-78  528.1  40.3  405   25-455    18-439 (489)
  2 KOG0158 Cytochrome P450 CYP3/C 100.0 1.3E-73 2.9E-78  518.6  35.9  412   20-460    16-451 (499)
  3 KOG0157 Cytochrome P450 CYP4/C 100.0 3.6E-69 7.8E-74  508.9  39.3  414   31-460    33-451 (497)
  4 PLN02169 fatty acid (omega-1)- 100.0 4.5E-68 9.8E-73  504.9  41.9  412   30-461    28-456 (500)
  5 PLN03195 fatty acid omega-hydr 100.0 6.6E-68 1.4E-72  509.0  42.3  427   31-461    28-472 (516)
  6 PLN02971 tryptophan N-hydroxyl 100.0 5.3E-67 1.1E-71  503.3  39.5  408   33-461    57-488 (543)
  7 PTZ00404 cytochrome P450; Prov 100.0   2E-67 4.4E-72  502.3  32.9  404   30-462    26-439 (482)
  8 PLN02290 cytokinin trans-hydro 100.0 2.2E-66 4.7E-71  499.0  38.7  404   30-461    39-471 (516)
  9 PLN03234 cytochrome P450 83B1; 100.0   9E-66 1.9E-70  493.1  39.6  406   30-459    25-448 (499)
 10 PLN02183 ferulate 5-hydroxylas 100.0   6E-66 1.3E-70  494.5  38.3  403   31-460    34-462 (516)
 11 PLN02500 cytochrome P450 90B1  100.0 5.4E-66 1.2E-70  492.6  36.8  400   33-461    38-448 (490)
 12 PLN00168 Cytochrome P450; Prov 100.0 2.2E-65 4.8E-70  490.9  38.8  411   32-461    34-471 (519)
 13 PLN02687 flavonoid 3'-monooxyg 100.0 8.2E-65 1.8E-69  486.8  39.0  404   33-461    34-460 (517)
 14 PLN00110 flavonoid 3',5'-hydro 100.0 1.2E-64 2.6E-69  482.5  38.5  417   20-461    16-451 (504)
 15 PLN03112 cytochrome P450 famil 100.0 1.1E-64 2.3E-69  487.0  37.8  430   13-461    10-459 (514)
 16 PLN02966 cytochrome P450 83A1  100.0 5.7E-65 1.2E-69  486.6  35.4  405   33-460    29-450 (502)
 17 KOG0159 Cytochrome P450 CYP11/ 100.0   5E-64 1.1E-68  445.1  35.4  408   33-459    50-472 (519)
 18 PLN02394 trans-cinnamate 4-mon 100.0 7.9E-64 1.7E-68  480.1  38.9  413   28-461    25-454 (503)
 19 PLN02774 brassinosteroid-6-oxi 100.0 1.3E-64 2.9E-69  479.1  33.0  411    7-463     5-424 (463)
 20 PLN02426 cytochrome P450, fami 100.0 2.6E-63 5.7E-68  471.5  41.2  397   41-461    49-454 (502)
 21 PLN02738 carotene beta-ring hy 100.0 2.3E-63   5E-68  479.0  35.9  414   27-461   109-550 (633)
 22 PLN02196 abscisic acid 8'-hydr 100.0   3E-63 6.5E-68  469.4  35.8  413    1-461     1-420 (463)
 23 PF00067 p450:  Cytochrome P450 100.0 1.3E-63 2.8E-68  478.6  27.6  402   35-460     1-420 (463)
 24 PLN03018 homomethionine N-hydr 100.0 1.8E-61 3.8E-66  461.3  41.8  412   33-461    40-478 (534)
 25 PLN02655 ent-kaurene oxidase   100.0 6.4E-62 1.4E-66  461.2  36.7  401   35-461     1-419 (466)
 26 PLN02936 epsilon-ring hydroxyl 100.0 1.5E-61 3.3E-66  460.5  38.9  412   33-461    12-438 (489)
 27 PLN02987 Cytochrome P450, fami 100.0 7.4E-61 1.6E-65  451.2  35.7  412   12-461     8-427 (472)
 28 PLN03141 3-epi-6-deoxocathaste 100.0 3.4E-61 7.4E-66  454.8  32.3  397   31-461     5-409 (452)
 29 PLN02302 ent-kaurenoic acid ox 100.0 2.9E-60 6.3E-65  455.5  36.6  390   33-461    42-445 (490)
 30 KOG0684 Cytochrome P450 [Secon 100.0 2.6E-59 5.6E-64  404.6  30.4  396   33-462    31-441 (486)
 31 PLN02648 allene oxide synthase 100.0   3E-51 6.6E-56  382.8  29.5  386   33-461    17-442 (480)
 32 COG2124 CypX Cytochrome P450 [ 100.0 6.3E-47 1.4E-51  349.9  23.9  331   58-462    25-369 (411)
 33 PF08492 SRP72:  SRP72 RNA-bind  67.1       4 8.6E-05   25.8   1.5    8  422-429    44-51  (59)
 34 PF05366 Sarcolipin:  Sarcolipi  58.7      14 0.00031   18.8   2.3   15   14-28     14-28  (31)
 35 PF05952 ComX:  Bacillus compet  56.9      11 0.00023   23.7   2.0   24  312-335     4-27  (57)
 36 PRK13664 hypothetical protein;  54.7      30 0.00066   21.4   3.6   22    1-22      1-22  (62)
 37 PHA02681 ORF089 virion membran  51.7      73  0.0016   21.6   5.4   18   12-29     10-27  (92)
 38 PF13980 UPF0370:  Uncharacteri  44.7      45 0.00098   20.8   3.3   11    1-11      1-11  (63)
 39 PF15330 SIT:  SHP2-interacting  39.7      82  0.0018   23.0   4.7    6   41-46     46-51  (107)
 40 PF05393 Hum_adeno_E3A:  Human   37.9      72  0.0016   22.0   3.8   10   36-45     62-71  (94)
 41 PF12554 MOZART1:  Mitotic-spin  37.8      94   0.002   18.8   4.7   42  290-331     6-47  (48)
 42 smart00545 JmjN Small domain f  36.5      74  0.0016   18.6   3.3   35   42-76      3-37  (42)
 43 COG2101 SPT15 TATA-box binding  35.8      15 0.00034   29.0   0.6   18  438-455    53-70  (185)
 44 PF05961 Chordopox_A13L:  Chord  35.1      89  0.0019   20.3   3.7   15   12-26      9-23  (68)
 45 PHA02902 putative IMV membrane  33.1 1.1E+02  0.0023   19.6   3.7   16   14-29     12-27  (70)
 46 PHA03049 IMV membrane protein;  31.7      79  0.0017   20.4   3.0   13   14-26     11-23  (68)
 47 KOG3506 40S ribosomal protein   31.4      23 0.00049   21.8   0.6   11  442-452    12-22  (56)
 48 COG2071 Predicted glutamine am  31.0      25 0.00054   29.8   1.0   55  357-425    28-92  (243)
 49 PF07886 BA14K:  BA14K-like pro  30.5      35 0.00076   18.4   1.2   16  437-452    16-31  (31)
 50 COG0851 MinE Septum formation   30.5 1.3E+02  0.0027   21.0   4.1   17  321-337    36-52  (88)
 51 PF05084 GRA6:  Granule antigen  29.1 1.2E+02  0.0026   23.7   4.2   11   30-40    174-184 (215)
 52 PF02468 PsbN:  Photosystem II   27.0 1.3E+02  0.0027   17.7   3.1   20    1-21      1-20  (43)
 53 PHA01346 hypothetical protein   26.5      60  0.0013   18.6   1.7   19  318-336    27-46  (53)
 54 PF13260 DUF4051:  Protein of u  25.1 1.6E+02  0.0035   17.5   3.4   22    6-27      3-24  (54)
 55 TIGR02588 conserved hypothetic  24.9 1.4E+02   0.003   22.4   3.8   23   14-36     12-34  (122)
 56 cd03742 SOCS_Rab40 SOCS (suppr  23.6 1.4E+02   0.003   17.6   2.9   32  321-367     4-38  (43)
 57 PF13625 Helicase_C_3:  Helicas  23.4 1.8E+02   0.004   22.0   4.6   40   56-96     75-114 (129)
 58 PF12508 DUF3714:  Protein of u  23.2      56  0.0012   27.1   1.8   42  358-402    52-94  (200)
 59 PF13993 YccJ:  YccJ-like prote  22.6 1.3E+02  0.0029   19.0   2.8   31  300-330     8-39  (69)
 60 PF08780 NTase_sub_bind:  Nucle  22.2 3.5E+02  0.0076   20.4   6.2   39  107-146    63-104 (124)
 61 PF11227 DUF3025:  Protein of u  22.1      53  0.0012   27.3   1.4   21  404-425   191-211 (212)
 62 PF02202 Tachykinin:  Tachykini  21.8      11 0.00025   14.8  -1.2    6  416-421     2-7   (11)
 63 PF07095 IgaA:  Intracellular g  21.6 1.6E+02  0.0035   29.4   4.7   38    9-46      4-41  (705)
 64 PF14483 Cut8_M:  Cut8 dimerisa  21.6 1.4E+02   0.003   17.0   2.6   18  312-329    17-35  (38)
 65 PF14824 Sirohm_synth_M:  Siroh  21.0 1.4E+02   0.003   16.0   2.3   15  320-334    15-29  (30)
 66 PF07849 DUF1641:  Protein of u  20.4 1.3E+02  0.0028   17.5   2.4   18  311-328    13-30  (42)

No 1  
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1e-73  Score=528.14  Aligned_cols=405  Identities=26%  Similarity=0.361  Sum_probs=328.9

Q ss_pred             HHHhhhcccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCc
Q 012330           25 VTKTLTQKSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKG  103 (466)
Q Consensus        25 ~~~~~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~  103 (466)
                      +.+.+.+.+.||||+++|++||++++...  .++..++++.++||+ |.+++|+.++|||+|+++++|++.+++..|+.|
T Consensus        18 ~~~~~~~~~lPPGP~~lPiIGnl~~l~~~--~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~R   95 (489)
T KOG0156|consen   18 FKKYRKRRNLPPGPPPLPIIGNLHQLGSL--PPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADR   95 (489)
T ss_pred             HHhccCCCCCCcCCCCCCccccHHHcCCC--chhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCC
Confidence            33344447899999999999999888544  689999999999996 899999999999999999999999999999999


Q ss_pred             hhhHHHHHhhc--cCceeec-CCcchHHHHhhhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHH
Q 012330          104 SYNYSILKDLL--GDGIFTV-DGEKWREQRKISSHE-FSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMK  179 (466)
Q Consensus       104 ~~~~~~~~~~~--~~~l~~~-~g~~w~~~R~~l~~~-~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~  179 (466)
                      +........+.  +.+++.+ +|+.|+.+||..... ++...++...+ ...++++.+++.+.+ ...+.+||+...+..
T Consensus        96 p~~~~~~~~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~-~R~~E~~~l~~~l~~-~~~~~~vdl~~~l~~  173 (489)
T KOG0156|consen   96 PDPTATLKYLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFME-IREEEVDELVKKLSK-SKKGEPVDLSELLDL  173 (489)
T ss_pred             CCchhhHHHhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHH-HHHHHHHHHHHHHHh-cCCCceeeHHHHHHH
Confidence            86221223332  3677776 999999999988765 78888888774 557888888888887 323389999999999


Q ss_pred             HHHHHHHHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhh-hhhHHHHHHhcc--CchHHHHHHHHHHHHHHHHHH
Q 012330          180 STLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYV-DIFWKIKKLLNI--GSEARLKQRIEVIDTFVYKII  256 (466)
Q Consensus       180 ~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i  256 (466)
                      ++.++|++++||.++...+  +++..++.+.+.+.......... +.+|.+.++++.  ...+.......++..++++.+
T Consensus       174 ~~~nvI~~~~fG~rf~~~~--~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i  251 (489)
T KOG0156|consen  174 LVGNVICRMLFGRRFEEED--EEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERII  251 (489)
T ss_pred             HHHHHHHHHHhCCccccCC--chHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998642  12234466666666655553333 333323444432  234566666666999999999


Q ss_pred             HHHHHhhhhhhhhhhccchhhHHHHhhccC--------ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHH
Q 012330          257 RKKTDQMHDFQEEYTSMKKEDILSRFLQVT--------DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIV  328 (466)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~--------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~  328 (466)
                      ++++++. ..+      ...|++|.|++..        ++++|.+.+.++++||+|||++++.|++.+|++||++|+|++
T Consensus       252 ~eh~~~~-~~~------~~~D~vD~lL~~~~~~~~~~~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~q  324 (489)
T KOG0156|consen  252 DEHREKI-GDE------EGRDFVDALLKLMKEEKAEGLTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQ  324 (489)
T ss_pred             HHHHhhh-ccC------CCCcHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHH
Confidence            9998876 211      1279999999763        678899999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCC-cccccccccCCCCeeecCCCEEEEeeccc
Q 012330          329 QEVKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVD-AKMCFSDDTLPDGFSVRKGDMVCYQAYAM  407 (466)
Q Consensus       329 ~Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~-~r~~~~~~~~~~g~~ip~G~~v~~~~~~~  407 (466)
                      +||++++|.++.         ++.+|+.+||||+|||+|++|++|+.|.. +|.+.+|+.+ +||.|||||.|.++.|++
T Consensus       325 eEId~vvG~~r~---------v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i-~Gy~IPkgT~v~vn~~ai  394 (489)
T KOG0156|consen  325 EEIDEVVGKGRL---------VSESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKI-GGYDIPKGTTVLVNLWAI  394 (489)
T ss_pred             HHHHHHhCCCCC---------CChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeE-cCEEcCCCCEEEEeehhh
Confidence            999999998852         68999999999999999999999999987 5666666655 999999999999999999


Q ss_pred             ccCCCCccCCCCCcCCCcccCCCCCccccCCCccccCCCCcccccccc
Q 012330          408 GRMKFIWGDDAEEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIK  455 (466)
Q Consensus       408 ~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~  455 (466)
                      |+||++| +||++|+||||++++ ..+. ....++|||.|+|+|||+.
T Consensus       395 ~rDp~vw-~dP~eF~PERFl~~~-d~~~-~~~~~iPFG~GRR~CpG~~  439 (489)
T KOG0156|consen  395 HRDPKVW-EDPEEFKPERFLDSN-DGKG-LDFKLIPFGSGRRICPGEG  439 (489)
T ss_pred             hcCCccC-CCccccChhhhcCCc-cccC-CceEecCCCCCcCCCCcHH
Confidence            9999999 999999999999985 1112 5677999999999999986


No 2  
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.3e-73  Score=518.64  Aligned_cols=412  Identities=24%  Similarity=0.370  Sum_probs=324.6

Q ss_pred             HHHHHHHHh--hhcccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcC
Q 012330           20 LVVQIVTKT--LTQKSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTN   96 (466)
Q Consensus        20 ~~~~~~~~~--~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~   96 (466)
                      ++++++.+.  ++.++++|+|+++|++|+...+...... ..+..+.+.+||+ +.++.+.+|.++|.||+.+++|+.++
T Consensus        16 l~y~~~~~~~~yw~rrGi~~~~p~p~~Gn~~~~~~~~~~-~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~   94 (499)
T KOG0158|consen   16 LLYLWLRWTYSYWRRRGIPGPKPLPFLGNLPGMLKRERP-GDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKD   94 (499)
T ss_pred             HHHHHHHhhhhhhccCCCCCCCCCCcEecHHHHHhccCc-HHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHh
Confidence            334444443  7788899999999999998887665444 5555555555586 78889999999999999999999999


Q ss_pred             CCCCCC--chhhHHHHHhhccCceeecCCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehH
Q 012330           97 FDNYGK--GSYNYSILKDLLGDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQ  174 (466)
Q Consensus        97 ~~~~~~--~~~~~~~~~~~~~~~l~~~~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~  174 (466)
                      +++|..  ++...+.-.++...+++..+|++|+++|..++|.||+.+++.+.+ ++++..+.+++.+.+....+..+++.
T Consensus        95 F~~F~~r~~~~~~d~~~~l~~~~Lf~~~g~~WK~lR~~lsP~Fts~kmk~m~~-t~~~~~~~l~~~l~~~~~~~~~~~~~  173 (499)
T KOG0158|consen   95 FDNFYNRKRPIYGDPEDPLSALNLFFLRGERWKRLRTKLSPTFTSGKLKKMFP-TMEEVGDELVRHLRRKSEGGQEGEIK  173 (499)
T ss_pred             CccCcCCCCCCcCCCCCcccccCchhccCchHHHHHHhhccccchhhHHHHHH-HHHHHHHHHHHHHHHhhcccCCccHH
Confidence            999999  444432222333477899999999999999999999999999995 89999999999999865444788999


Q ss_pred             HhHHHHHHHHHHHHHhcCCCcccCCCCCCcchhHHHHHHHHHH-hHh-----hhhhhhHHHHHHhccCchHHHHHHHHHH
Q 012330          175 DLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDASAM-TLW-----RYVDIFWKIKKLLNIGSEARLKQRIEVI  248 (466)
Q Consensus       175 ~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~  248 (466)
                      +.+..++.|+|+.++||.+.++..+..   ..+.......... ...     .....++.+...+.  .........+.+
T Consensus       174 dl~~~yT~DVI~~~AfG~~~~s~~d~~---~~F~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~l~--~~~~~~~~~~~~  248 (499)
T KOG0158|consen  174 DLCARYTTDVIGSCAFGLDANSLRDPK---AEFRRMGRRAFFLSRGLFPLKFMLIFLFPKLALPLR--VKLFPEDVTDFF  248 (499)
T ss_pred             HHHHHHHHHHHhHhhcccchhhhcCch---HHHHHhhHHHHHHhhccchHhHhHHHHhHHHHHhhh--cccChHHHHHHH
Confidence            999999999999999999998877554   3333322222211 111     11122233333321  111223333444


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHhhccC-------------ChhHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 012330          249 DTFVYKIIRKKTDQMHDFQEEYTSMKKEDILSRFLQVT-------------DPKYLRDIILNFVIAGKDTTAATLSWFIY  315 (466)
Q Consensus       249 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~-------------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~  315 (466)
                      .+.+...++.|    ....     ....|+++.+++..             +.++|+++++.|++||.||||++++.++|
T Consensus       249 ~~~v~~~v~~R----~~~~-----~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeTts~tlsf~lY  319 (499)
T KOG0158|consen  249 RKLVNSRVEQR----EKEN-----IERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFETTASTLSFALY  319 (499)
T ss_pred             HHHHHHHHHHH----HhcC-----CCCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence            45555555554    1111     24789999999764             47899999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHHHHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeec
Q 012330          316 MLCKHPAVQEKIVQEVKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVR  395 (466)
Q Consensus       316 ~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip  395 (466)
                      +|+.||++|+|||+||+++.....         .+|++.+.+|+||++||+||||++|++|...|+|+++.++++|+.||
T Consensus       320 eLA~~PdvQ~kLreEI~~~~~~~~---------~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~~R~C~k~~~i~~~~~i~  390 (499)
T KOG0158|consen  320 ELAKNPDVQDKLREEIDEVLEEKE---------GLTYDSLSKLKYLDMVIKETLRLYPPAPFLNRECTKDYEIPGGFVIP  390 (499)
T ss_pred             HHhcChHHHHHHHHHHHHHhcccC---------CCCHHHHhCCcHHHHHHHHHHhhCCCcccccceecCceecCCCeEeC
Confidence            999999999999999999976653         26999999999999999999999999999999999999995599999


Q ss_pred             CCCEEEEeecccccCCCCccCCCCCcCCCcccCCCCCccccCCCccccCCCCccccccccccccc
Q 012330          396 KGDMVCYQAYAMGRMKFIWGDDAEEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKC  460 (466)
Q Consensus       396 ~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~  460 (466)
                      ||+.|.++++++||||++| |||++|+||||.+++..  ..++..|+|||.|+|+|+|++ ||.-
T Consensus       391 kG~~V~Ip~~alH~Dp~~~-p~Pe~F~PERF~~~~~~--~~~~~~ylPFG~GPR~CIGmR-fa~m  451 (499)
T KOG0158|consen  391 KGTPVMIPTYALHHDPEYW-PEPEKFKPERFEEENNK--SRHPGAYLPFGVGPRNCIGMR-FALM  451 (499)
T ss_pred             CCCEEEeecccccCCcccC-CCcccCCCccCCCCccc--ccCCccccCCCCCccccHHHH-HHHH
Confidence            9999999999999999999 99999999999988654  335788999999999999998 6653


No 3  
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00  E-value=3.6e-69  Score=508.95  Aligned_cols=414  Identities=33%  Similarity=0.536  Sum_probs=340.0

Q ss_pred             cccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcC-ceEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHHH
Q 012330           31 QKSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHG-TYRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYSI  109 (466)
Q Consensus        31 ~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg-~~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~  109 (466)
                      ....+|||+++|++|++..+.....++..++.++..+|| .|..++++.++++++||+.+++|+..+...+.+.+.+.+.
T Consensus        33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~  112 (497)
T KOG0157|consen   33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES  112 (497)
T ss_pred             HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence            457899999999999998886544668899999999998 5889999999999999999999997666778888888888


Q ss_pred             HHhhccCceeecCCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHHHHHH
Q 012330          110 LKDLLGDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSIFKVA  189 (466)
Q Consensus       110 ~~~~~~~~l~~~~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i~~~~  189 (466)
                      +..++|+|+++++|+.|+++|+++++.|+.+.++.+.. .+.+....+...+..... +..+|+.+.++++++|+++.++
T Consensus       113 ~~~~lG~gll~~~g~~W~~~Rk~~~~~f~~~~L~~~~~-~~~~~~~~~~~~~~~~~~-~~~vd~~~~~~~~tld~i~~~~  190 (497)
T KOG0157|consen  113 LKPWLGDGLLFSDGEKWHKHRKLLTPAFHFEILKSFVP-VFIESSLILLLLLELAAS-GEEVDLQDLLKRLTLDIICKTA  190 (497)
T ss_pred             HHHHhcCccccCCchHHHHHHhhccHhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhc-CCeEcHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999995 555566666666655332 3239999999999999999999


Q ss_pred             hcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhhhhhHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012330          190 FGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYVDIFWKIKKLLNIGSEARLKQRIEVIDTFVYKIIRKKTDQMHDFQEE  269 (466)
Q Consensus       190 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  269 (466)
                      ||.  ...+.+.++..++..++.............+. ....+......++..++.+.+.+++.++|+++++....+...
T Consensus       191 ~G~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~a~~~~~~~~~~iI~~rr~~~~~~~~~  267 (497)
T KOG0157|consen  191 MGP--ESLDAEGPELFEYVQAFDDLTELISKRINLPL-GTKFLYGLKSERKLKKARKILHDFLEKIIRERREELEKEGSG  267 (497)
T ss_pred             cCC--ccccccCCcccHHHHHHHHHHHHHHHHHcCch-hhhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            992  22112233446788888877766665555553 333333334778999999999999999999999876543321


Q ss_pred             hhccchhhHHHHhh-ccC---ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCCCcchhhh
Q 012330          270 YTSMKKEDILSRFL-QVT---DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATGAKDISDFLK  345 (466)
Q Consensus       270 ~~~~~~~d~l~~ll-~~~---~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~  345 (466)
                      . .....|+++.+. +..   ++++|.+++.+|++||+|||+++++|+++.|+.||++|+|+++|++++++....+    
T Consensus       268 ~-~~~~~d~L~~~~~~~~~~l~~~~i~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~----  342 (497)
T KOG0157|consen  268 E-EKKRLDFLDTLLLEEDKPLTDEDIRDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDDK----  342 (497)
T ss_pred             c-cchhhhHHHHHHHhccCCCCHHHHHHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCC----
Confidence            1 234678888433 322   8899999999999999999999999999999999999999999999999855421    


Q ss_pred             hcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCCCEEEEeecccccCCCCccCCCCCcCCCc
Q 012330          346 VAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKFIWGDDAEEFKPER  425 (466)
Q Consensus       346 ~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~R  425 (466)
                          +...+.++|+||++||+|||||+|++|...|.+.+|+++.+||.||||+.|.++.+++|||+++||+||++|+|||
T Consensus       343 ----~~~~~~~~m~yl~~vi~EsLRLyppvp~~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeR  418 (497)
T KOG0157|consen  343 ----WEVEKLDQMKYLEMVIKESLRLYPPVPLVARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPER  418 (497)
T ss_pred             ----CChhhhhhhHHHHHHHHHHhccCCCCchhhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccc
Confidence                1233333799999999999999999999999999999997899999999999999999999999977999999999


Q ss_pred             ccCCCCCccccCCCccccCCCCccccccccccccc
Q 012330          426 WLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKC  460 (466)
Q Consensus       426 fl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~  460 (466)
                      |++++... ..++..|+|||+|+|.|+|++ ||.-
T Consensus       419 f~~~~~~~-~~~~~~fipFsaGpR~CiG~~-fA~l  451 (497)
T KOG0157|consen  419 FLDGEEKA-KRHPFAFIPFSAGPRNCIGQK-FAML  451 (497)
T ss_pred             cCCCCCcC-CCCCccccCCCCCcccchhHH-HHHH
Confidence            99764433 345788999999999999887 7653


No 4  
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00  E-value=4.5e-68  Score=504.95  Aligned_cols=412  Identities=31%  Similarity=0.539  Sum_probs=324.0

Q ss_pred             hcccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcC-ceE---EecCCcceEEecChhhHHHhhhcCCCCCCCchh
Q 012330           30 TQKSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHG-TYR---LLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSY  105 (466)
Q Consensus        30 ~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg-~~~---~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~  105 (466)
                      +++++.|||+++|++|+...+..+....++++.++..+|| .+.   .+.++.++++|+||+.+++|+.++...|.++..
T Consensus        28 ~~~~~~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~  107 (500)
T PLN02169         28 KKPHGQPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPE  107 (500)
T ss_pred             hccCCCCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHH
Confidence            4556899999999999987776665556777777777787 454   456889999999999999999988778888765


Q ss_pred             hHHHHHhhccCceeecCCcchHHHHhhhhhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHH
Q 012330          106 NYSILKDLLGDGIFTVDGEKWREQRKISSHEFSTKVLRDFS-SAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDS  184 (466)
Q Consensus       106 ~~~~~~~~~~~~l~~~~g~~w~~~R~~l~~~~s~~~l~~~~-~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~  184 (466)
                      +.. .....|+|+++++|+.|+++|+++++.|+..++..+. ...+.+..+.+++.+.+.+..+..+|+.+.+..+++|+
T Consensus       108 ~~~-~~~~~g~gl~~~~g~~Wr~~Rk~l~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dv  186 (500)
T PLN02169        108 FKK-IFDVLGEGILTVDFELWEDLRKSNHALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDT  186 (500)
T ss_pred             HHH-HHHhhcCcccccCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHH
Confidence            543 3456789999999999999999999999998876532 24566777888888876555667899999999999999


Q ss_pred             HHHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhhhhh--HHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 012330          185 IFKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYVDIF--WKIKKLLNIGSEARLKQRIEVIDTFVYKIIRKKTDQ  262 (466)
Q Consensus       185 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  262 (466)
                      ++.++||.+.+..+... ....+..++.............++  +.+..+++....++..++.+.+.+++.+.|+++++.
T Consensus       187 i~~~~fG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~r~~~  265 (500)
T PLN02169        187 SSILMTGYDPMSLSIEM-LEVEFGEAADIGEEAIYYRHFKPVILWRLQNWIGIGLERKMRTALATVNRMFAKIISSRRKE  265 (500)
T ss_pred             HHhheeCCCccccCCCC-CCCHHHHHHHHHHHHHHhHHhccHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999875433211 113444444443332222222221  122334444556778889999999999999988764


Q ss_pred             hhhhhhhhhccchhhHHHHhhccC----------ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 012330          263 MHDFQEEYTSMKKEDILSRFLQVT----------DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVK  332 (466)
Q Consensus       263 ~~~~~~~~~~~~~~d~l~~ll~~~----------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~  332 (466)
                      .....+.  +....|+++.+++..          +++++.+++..+++||+|||+++++|++++|+.||++|+|+++||+
T Consensus       266 ~~~~~~~--~~~~~d~l~~ll~~~~~~~~~~~~~~~~~i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~  343 (500)
T PLN02169        266 EISRAET--EPYSKDALTYYMNVDTSKYKLLKPKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEIN  343 (500)
T ss_pred             hhccccc--cCCCcCHHHHHHhccccccccccCCChHHHHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            2211100  012368888888642          4668999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCCCEEEEeecccccCCC
Q 012330          333 EATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKF  412 (466)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~  412 (466)
                      +++               +.+++.+||||+|||+|+||++|++|...|++.+++++++||.||||+.|.++.+++||||+
T Consensus       344 ~v~---------------~~~dl~~L~Yl~avi~EtLRl~P~vp~~~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~  408 (500)
T PLN02169        344 TKF---------------DNEDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRS  408 (500)
T ss_pred             hhC---------------CHHHHhcCHHHHHHHHHHHhcCCCCCcCceecCCCCCccCCEEECCCCEEEEcHHHhhCCcc
Confidence            773               67899999999999999999999999999999999888899999999999999999999999


Q ss_pred             CccCCCCCcCCCcccCCCCCccccCCCccccCCCCcccccccccccccc
Q 012330          413 IWGDDAEEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       413 ~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      +||+||++|+||||+++++......+..|+|||+|+|+|+|++ ||...
T Consensus       409 ~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~-~A~~e  456 (500)
T PLN02169        409 VWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKH-LALLQ  456 (500)
T ss_pred             ccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHH-HHHHH
Confidence            9988999999999997654332223678999999999999877 66544


No 5  
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00  E-value=6.6e-68  Score=508.99  Aligned_cols=427  Identities=48%  Similarity=0.793  Sum_probs=322.8

Q ss_pred             cccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCceEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHHHH
Q 012330           31 QKSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGTYRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYSIL  110 (466)
Q Consensus        31 ~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~  110 (466)
                      +++.+|||+++|++|+++.+..+...+.++.+++.++|..|.++++++++++++||+++++|+.++...|.+...+....
T Consensus        28 ~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~  107 (516)
T PLN03195         28 SQRNRKGPKSWPIIGAALEQLKNYDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYM  107 (516)
T ss_pred             hccccCCCCCCCeecchHHHHhccchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHH
Confidence            33568999999999998766544333445555554444468889999999999999999999987656677776554445


Q ss_pred             HhhccCceeecCCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHHHHHHh
Q 012330          111 KDLLGDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSIFKVAF  190 (466)
Q Consensus       111 ~~~~~~~l~~~~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i~~~~f  190 (466)
                      ..+.+++++..+|+.|+++|+++++.|+..+++.+.+.++.+..+.+.+.+.+....+.++|+.+++..+++++++.++|
T Consensus       108 ~~~~g~~l~~~~g~~w~~~Rr~l~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~f  187 (516)
T PLN03195        108 EVLLGDGIFNVDGELWRKQRKTASFEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKVGF  187 (516)
T ss_pred             HHHhcCeeeccCcHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHHHh
Confidence            55667889889999999999999999999999998875667778888888875444566899999999999999999999


Q ss_pred             cCCCcccCCCCCCcchhHHHHHHHHHHhHhhhhhhhHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012330          191 GVELDSVCGSNEEGTRFSSAFDDASAMTLWRYVDIFWKIKKLLNIGSEARLKQRIEVIDTFVYKIIRKKTDQMHDFQEEY  270 (466)
Q Consensus       191 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  270 (466)
                      |.+++..++.. ....+..++...........+.+++.+.++++....+...+..+.+.+++.+.+++++++....... 
T Consensus       188 G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-  265 (516)
T PLN03195        188 GVEIGTLSPSL-PENPFAQAFDTANIIVTLRFIDPLWKLKKFLNIGSEALLSKSIKVVDDFTYSVIRRRKAEMDEARKS-  265 (516)
T ss_pred             CCCccccccCC-CccHHHHHHHHHHHHHHHHHhcchhhHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-
Confidence            99887544221 1134555544433222222233333333333323334556677788888888888887654321100 


Q ss_pred             hccchhhHHHHhhccC-------ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCCCc---
Q 012330          271 TSMKKEDILSRFLQVT-------DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATGAKDI---  340 (466)
Q Consensus       271 ~~~~~~d~l~~ll~~~-------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~---  340 (466)
                      ......|+++.+++..       +++++.+++..+++||+|||+++++|++++|++||++|+||++|++++.+....   
T Consensus       266 ~~~~~~d~l~~ll~~~~~~~~~l~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~  345 (516)
T PLN03195        266 GKKVKHDILSRFIELGEDPDSNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEED  345 (516)
T ss_pred             cccccccHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhccccccc
Confidence            0113568999998532       678999999999999999999999999999999999999999999998753200   


Q ss_pred             ch----h----hhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCCCEEEEeecccccCCC
Q 012330          341 SD----F----LKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKF  412 (466)
Q Consensus       341 ~~----~----~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~  412 (466)
                      +.    .    ......++++++++||||+|||+|+||++|++|...|++.+++++++||.|||||.|.++.+++||||+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~  425 (516)
T PLN03195        346 PEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEY  425 (516)
T ss_pred             ccccchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcchhhhhccCcCcCCCcEECCCCEEEEehHhhccChh
Confidence            00    0    000123689999999999999999999999999999998888888899999999999999999999999


Q ss_pred             CccCCCCCcCCCcccCCCCCccccCCCccccCCCCcccccccccccccc
Q 012330          413 IWGDDAEEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       413 ~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      +||+||++|+||||++++.. ....+..|+|||+|+|+|+|.. ||..+
T Consensus       426 ~~g~dP~~F~PeRwl~~~~~-~~~~~~~~~pFG~G~R~CiG~~-lA~~e  472 (516)
T PLN03195        426 NWGPDAASFKPERWIKDGVF-QNASPFKFTAFQAGPRICLGKD-SAYLQ  472 (516)
T ss_pred             hhccChhhcCCcccCCCCCc-CCCCCceEeccCCCCCcCcCHH-HHHHH
Confidence            99999999999999964321 1223557999999999999876 65543


No 6  
>PLN02971 tryptophan N-hydroxylase
Probab=100.00  E-value=5.3e-67  Score=503.30  Aligned_cols=408  Identities=19%  Similarity=0.302  Sum_probs=308.5

Q ss_pred             cCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcC-c-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHHHH
Q 012330           33 SGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHG-T-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYSIL  110 (466)
Q Consensus        33 ~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg-~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~  110 (466)
                      +.||||+++|++|+++.+..+ ...+.++.++.++|| + |.+++|++++|+++||+++++++.+++..|.+++...  .
T Consensus        57 ~lPPGP~~lPiiGnl~~l~~~-~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~--~  133 (543)
T PLN02971         57 PLPPGPTGFPIVGMIPAMLKN-RPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTY--A  133 (543)
T ss_pred             CCCcCCCCCCcccchHHhccC-CcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCccc--c
Confidence            689999999999998876433 124678999999998 5 7788999999999999999999998877788886432  2


Q ss_pred             HhhccCc----eeecCCcchHHHHhhhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHH
Q 012330          111 KDLLGDG----IFTVDGEKWREQRKISSHE-FSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSI  185 (466)
Q Consensus       111 ~~~~~~~----l~~~~g~~w~~~R~~l~~~-~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i  185 (466)
                      ...++.+    ++..+|+.|+++|+++.+. ++...++.+. .++++..+.+.+.+.+....+.++|+.+.+..++++++
T Consensus       134 ~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi  212 (543)
T PLN02971        134 QKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLH-DNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYCGNAI  212 (543)
T ss_pred             hhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHH
Confidence            2333433    6778999999999999765 4544455555 57888888888888765455668999999999999999


Q ss_pred             HHHHhcCCCcccCC--CCCCcchhHHHHHHHHHHhHh----hhhhhhHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHH
Q 012330          186 FKVAFGVELDSVCG--SNEEGTRFSSAFDDASAMTLW----RYVDIFWKIKKLLNI-GSEARLKQRIEVIDTFVYKIIRK  258 (466)
Q Consensus       186 ~~~~fG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~  258 (466)
                      +.++||.++...+.  .+.........+.........    .....+|.+ ++++. ...+...+..+.+.+++.+.+++
T Consensus       213 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  291 (543)
T PLN02971        213 KRLMFGTRTFSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAFCISDYLPML-TGLDLNGHEKIMRESSAIMDKYHDPIIDE  291 (543)
T ss_pred             HHHHhCCcccccccccccchhHHHHHHHHHHHHHHHhccCCcHHHhCCch-hhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988743211  011112233334333322111    111112222 22221 22344555667788888888888


Q ss_pred             HHHhhhhhhhhhhccchhhHHHHhhccC--------ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHH
Q 012330          259 KTDQMHDFQEEYTSMKKEDILSRFLQVT--------DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQE  330 (466)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~--------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~E  330 (466)
                      +.+..+.+..    ....|+++.|++..        +++++.+++..+++||+|||+++++|++++|+.||++|+|+++|
T Consensus       292 ~~~~~~~~~~----~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~E  367 (543)
T PLN02971        292 RIKMWREGKR----TQIEDFLDIFISIKDEAGQPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEE  367 (543)
T ss_pred             HHHHHhccCC----CCCcCHHHHHHhhhcccCCCCCCHHHHHHhHHHHheeccchHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            7654332110    12468999999631        67899999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCC-cccccccccCCCCeeecCCCEEEEeeccccc
Q 012330          331 VKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVD-AKMCFSDDTLPDGFSVRKGDMVCYQAYAMGR  409 (466)
Q Consensus       331 i~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~-~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~  409 (466)
                      |+++++..+         .++.+++++|||++|||+|+||++|++|.. +|++.+|+++ +||.||||+.|.++.+++||
T Consensus       368 I~~v~g~~~---------~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~-~G~~IpkGt~v~~~~~~~~~  437 (543)
T PLN02971        368 IDRVVGKER---------FVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTV-AGYHIPKGSQVLLSRYGLGR  437 (543)
T ss_pred             HHHHhCCCC---------CCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeE-CCEEECCCCEEEECcHHhcC
Confidence            999997643         369999999999999999999999999984 5666777666 99999999999999999999


Q ss_pred             CCCCccCCCCCcCCCcccCCCCCc-cccCCCccccCCCCcccccccccccccc
Q 012330          410 MKFIWGDDAEEFKPERWLDENGIF-QKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       410 d~~~~g~~p~~F~P~Rfl~~~~~~-~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      ||++| +||++|+||||+++++.. ....+..|+|||+|+|.|+|.. ||...
T Consensus       438 d~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~-lA~~e  488 (543)
T PLN02971        438 NPKVW-SDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPA-LGTAI  488 (543)
T ss_pred             ChhhC-CCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHH-HHHHH
Confidence            99999 999999999999764321 1123557999999999999885 66544


No 7  
>PTZ00404 cytochrome P450; Provisional
Probab=100.00  E-value=2e-67  Score=502.27  Aligned_cols=404  Identities=22%  Similarity=0.311  Sum_probs=312.7

Q ss_pred             hcccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHH
Q 012330           30 TQKSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYS  108 (466)
Q Consensus        30 ~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~  108 (466)
                      .+.+.+|||+++|++|+++.+..   +++.++.+++++||+ |.++.++.++|+++||+++++++.++.+.|.+++....
T Consensus        26 ~~~~~~pgp~~~p~~G~~~~~~~---~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~  102 (482)
T PTZ00404         26 IHKNELKGPIPIPILGNLHQLGN---LPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPS  102 (482)
T ss_pred             ccCCCCCCCCCCCeeccHhhhcc---cHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcce
Confidence            34579999999999999887744   488999999999996 78888899999999999999999876566766554332


Q ss_pred             HHHhhccCceeecCCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHHHHH
Q 012330          109 ILKDLLGDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSIFKV  188 (466)
Q Consensus       109 ~~~~~~~~~l~~~~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i~~~  188 (466)
                      .....++++++..+|+.|+++|+++++.|+..+++.+.+ .+.+.++.+++.+.+..+.+..+|+.+.+..+++++++.+
T Consensus       103 ~~~~~~~~~l~~~~g~~w~~~Rk~~~~~f~~~~l~~~~~-~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~  181 (482)
T PTZ00404        103 IKHGTFYHGIVTSSGEYWKRNREIVGKAMRKTNLKHIYD-LLDDQVDVLIESMKKIESSGETFEPRYYLTKFTMSAMFKY  181 (482)
T ss_pred             eeeeccCCceeccChHHHHHHHHHHHHHHhhhccccHHH-HHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHH
Confidence            222334788899999999999999999999999999885 7888999999998765455668999999999999999999


Q ss_pred             HhcCCCcccCCC-CCCcchhHHHHHHHHHHhHhhh-hhhhHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012330          189 AFGVELDSVCGS-NEEGTRFSSAFDDASAMTLWRY-VDIFWKIKKLLNIGSEARLKQRIEVIDTFVYKIIRKKTDQMHDF  266 (466)
Q Consensus       189 ~fG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  266 (466)
                      +||.+++..++. ......+.+.+...+....... ...++.+.... ........+..+.+.+++.+.++++++.... 
T Consensus       182 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  259 (482)
T PTZ00404        182 IFNEDISFDEDIHNGKLAELMGPMEQVFKDLGSGSLFDVIEITQPLY-YQYLEHTDKNFKKIKKFIKEKYHEHLKTIDP-  259 (482)
T ss_pred             HhccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhhHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-
Confidence            999987643211 1112345555555443322111 11111111110 0111223344556666666666655443211 


Q ss_pred             hhhhhccchhhHHHHhhccC---Chh---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCCCc
Q 012330          267 QEEYTSMKKEDILSRFLQVT---DPK---YLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATGAKDI  340 (466)
Q Consensus       267 ~~~~~~~~~~d~l~~ll~~~---~~~---~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~  340 (466)
                            ....|+++.++++.   +++   ++++++..+++||+|||+++++|++++|++||++|+||++||+++.+..+ 
T Consensus       260 ------~~~~dll~~ll~~~~~~~~~~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~-  332 (482)
T PTZ00404        260 ------EVPRDLLDLLIKEYGTNTDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGRN-  332 (482)
T ss_pred             ------CCcccHHHHHHHHhccCCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCCC-
Confidence                  12468999999763   333   48889999999999999999999999999999999999999999997642 


Q ss_pred             chhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCC-CcccccccccCCCCeeecCCCEEEEeecccccCCCCccCCCC
Q 012330          341 SDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPV-DAKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKFIWGDDAE  419 (466)
Q Consensus       341 ~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~-~~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~  419 (466)
                              .++.+++++||||+|||+|+||++|++|. .+|++.+|.++.+||.||||+.|.++.+++||||++| |||+
T Consensus       333 --------~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~-~dP~  403 (482)
T PTZ00404        333 --------KVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYF-ENPE  403 (482)
T ss_pred             --------CCCccccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCcccc-CCcc
Confidence                    25889999999999999999999999997 5788888766658999999999999999999999999 9999


Q ss_pred             CcCCCcccCCCCCccccCCCccccCCCCccccccccccccccc
Q 012330          420 EFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKCFW  462 (466)
Q Consensus       420 ~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~~~  462 (466)
                      +|+||||+++.      .+..|+|||+|+|.|+|.+ ||..+.
T Consensus       404 ~F~PeRwl~~~------~~~~~~pFg~G~R~C~G~~-~A~~e~  439 (482)
T PTZ00404        404 QFDPSRFLNPD------SNDAFMPFSIGPRNCVGQQ-FAQDEL  439 (482)
T ss_pred             ccCccccCCCC------CCCceeccCCCCCCCccHH-HHHHHH
Confidence            99999998752      3567999999999999866 776553


No 8  
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00  E-value=2.2e-66  Score=498.96  Aligned_cols=404  Identities=20%  Similarity=0.336  Sum_probs=313.1

Q ss_pred             hcccCCCCCCCCCCcchhhhhhcc----------------hhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHh
Q 012330           30 TQKSGNKQKKYHPIGGTVFNQLLN----------------FNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYM   92 (466)
Q Consensus        30 ~~~~~~pgp~~~p~~G~~~~~~~~----------------~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~i   92 (466)
                      ..++.||||+++|++||+..+...                ..+....+.+++++||+ |.+++++.++|+++||++++++
T Consensus        39 ~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~i  118 (516)
T PLN02290         39 MERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKEL  118 (516)
T ss_pred             HHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHH
Confidence            455789999999999998776421                01233456889999996 7888999999999999999999


Q ss_pred             hhcCCCCCCCchhhH-HHHHhhccCceeecCCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc
Q 012330           93 LKTNFDNYGKGSYNY-SILKDLLGDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSD-KI  170 (466)
Q Consensus        93 l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~-~~  170 (466)
                      +.++ ..+..++... .......|.+++..+|+.|+++|+++++.|+..+++.+.+ .+.+.++.+++.+.+..+.+ ..
T Consensus       119 l~~~-~~~~~r~~~~~~~~~~~~g~~l~~~~g~~Wk~~Rk~~~~~f~~~~l~~~~~-~i~~~~~~l~~~l~~~~~~~~~~  196 (516)
T PLN02290        119 LTKY-NTVTGKSWLQQQGTKHFIGRGLLMANGADWYHQRHIAAPAFMGDRLKGYAG-HMVECTKQMLQSLQKAVESGQTE  196 (516)
T ss_pred             HhcC-CCCCCCcchhhhHHHHHhcCCccccCchHHHHHHhhcccccCHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCce
Confidence            9876 4444444322 1233446788999999999999999999999999999885 78889999999997654333 58


Q ss_pred             eehHHhHHHHHHHHHHHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhhhhhHHHHHHhccCchHHHHHHHHHHHH
Q 012330          171 LDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYVDIFWKIKKLLNIGSEARLKQRIEVIDT  250 (466)
Q Consensus       171 vdl~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  250 (466)
                      +|+.+.+..+++++++.++||.+++..       ..+...+................+..++++....++..+..+.+.+
T Consensus       197 vd~~~~~~~~~~~vi~~~~fG~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~  269 (516)
T PLN02290        197 VEIGEYMTRLTADIISRTEFDSSYEKG-------KQIFHLLTVLQRLCAQATRHLCFPGSRFFPSKYNREIKSLKGEVER  269 (516)
T ss_pred             EEhHHHHHHHHHHHHHHHHcCCccccc-------hHHHHHHHHHHHHHHHhhhhhcCchhhhCCChhHHHHHHHHHHHHH
Confidence            999999999999999999999887421       2233333322222111111111112233333334556667788889


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhccchhhHHHHhhccC----------ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 012330          251 FVYKIIRKKTDQMHDFQEEYTSMKKEDILSRFLQVT----------DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKH  320 (466)
Q Consensus       251 ~~~~~i~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~----------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~  320 (466)
                      ++.+.++++++..+.+.+   .....|+++.+++..          +++++.+++..+++||+|||+++++|++++|++|
T Consensus       270 ~~~~~i~~~~~~~~~~~~---~~~~~d~l~~ll~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~tl~~~l~~L~~~  346 (516)
T PLN02290        270 LLMEIIQSRRDCVEIGRS---SSYGDDLLGMLLNEMEKKRSNGFNLNLQLIMDECKTFFFAGHETTALLLTWTLMLLASN  346 (516)
T ss_pred             HHHHHHHHHHHHhhcccC---CCCCCCHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC
Confidence            999999888765432211   112468999888641          5678999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCCCEE
Q 012330          321 PAVQEKIVQEVKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDMV  400 (466)
Q Consensus       321 p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~v  400 (466)
                      |++|+|+++||+++++...          ++.+++++||||+|||+||||++|+++.++|.+.+|.++ +||.|||||.|
T Consensus       347 P~vq~kl~~Ei~~v~~~~~----------~~~~~l~~lpYl~avi~EtlRl~p~~~~~~R~~~~d~~i-~g~~IP~Gt~V  415 (516)
T PLN02290        347 PTWQDKVRAEVAEVCGGET----------PSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKL-GDLHIPKGLSI  415 (516)
T ss_pred             HHHHHHHHHHHHHHhCCCC----------CCHHHHhcChHHHHHHHHHHHcCCCccccceeecCCeeE-CCEEECCCCEE
Confidence            9999999999999987542          589999999999999999999999999888888888777 99999999999


Q ss_pred             EEeecccccCCCCccCCCCCcCCCcccCCCCCccccCCCccccCCCCcccccccccccccc
Q 012330          401 CYQAYAMGRMKFIWGDDAEEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       401 ~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      .++.+++||||++||+||++|+||||++++.    .....|+|||+|+|.|+|.. +|...
T Consensus       416 ~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~----~~~~~~~pFG~G~R~C~G~~-lA~~e  471 (516)
T PLN02290        416 WIPVLAIHHSEELWGKDANEFNPDRFAGRPF----APGRHFIPFAAGPRNCIGQA-FAMME  471 (516)
T ss_pred             EecHHHhcCChhhhCCChhhcCccccCCCCC----CCCCeEecCCCCCCCCccHH-HHHHH
Confidence            9999999999999977999999999995421    12456999999999999876 66544


No 9  
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00  E-value=9e-66  Score=493.09  Aligned_cols=406  Identities=23%  Similarity=0.356  Sum_probs=314.8

Q ss_pred             hcccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHH
Q 012330           30 TQKSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYS  108 (466)
Q Consensus        30 ~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~  108 (466)
                      ++.+.||||+++|++|++..+..  .++..++.+++++||+ |++++++.++++++||+++++|+.++...|.+++.+..
T Consensus        25 ~~~~~pPgp~~~P~iG~~~~~~~--~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~  102 (499)
T PLN03234         25 KSLRLPPGPKGLPIIGNLHQMEK--FNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKG  102 (499)
T ss_pred             CCCCCCcCCCCCCeeccHHhcCC--CCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchh
Confidence            34478999999999999877642  2467889999999995 77889999999999999999999987677887765431


Q ss_pred             HHH-hhccCce-eecCCcchHHHHhhh-hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHH
Q 012330          109 ILK-DLLGDGI-FTVDGEKWREQRKIS-SHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSI  185 (466)
Q Consensus       109 ~~~-~~~~~~l-~~~~g~~w~~~R~~l-~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i  185 (466)
                      ... ...+..+ +...++.|+++|+.+ .+.|+.++++.+.+ .+++.++.+++.+.+..+.++++|+.+.+..++++++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~-~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t~dvi  181 (499)
T PLN03234        103 QQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRP-VREEECQRMMDKIYKAADQSGTVDLSELLLSFTNCVV  181 (499)
T ss_pred             hhhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHH-HHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHHHHHH
Confidence            111 1122332 335678999999975 68899999999884 8888999999999876666779999999999999999


Q ss_pred             HHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhHhh-hhhhhHHHHHHhc--cCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 012330          186 FKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTLWR-YVDIFWKIKKLLN--IGSEARLKQRIEVIDTFVYKIIRKKTDQ  262 (466)
Q Consensus       186 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~  262 (466)
                      +.++||.+++..+.   +...+.+.+.......... ....++.+ +++.  .+..++..++.+.+.+++.++++++++.
T Consensus       182 ~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~  257 (499)
T PLN03234        182 CRQAFGKRYNEYGT---EMKRFIDILYETQALLGTLFFSDLFPYF-GFLDNLTGLSARLKKAFKELDTYLQELLDETLDP  257 (499)
T ss_pred             HHHHhCCcccccch---hHHHHHHHHHHHHHHcCCCcHHHHhhHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999998864321   2244555544433221111 11111211 1111  1234567788889999999999887654


Q ss_pred             hhhhhhhhhccchhhHHHHhhccC---------ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 012330          263 MHDFQEEYTSMKKEDILSRFLQVT---------DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKE  333 (466)
Q Consensus       263 ~~~~~~~~~~~~~~d~l~~ll~~~---------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~  333 (466)
                      ....      .+..|+++.+++..         +++++.+++..+++||+|||+++++|++++|++||++|+|+++|+++
T Consensus       258 ~~~~------~~~~d~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~  331 (499)
T PLN03234        258 NRPK------QETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRN  331 (499)
T ss_pred             cccC------CCcccHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            2211      12457888777531         67889999999999999999999999999999999999999999999


Q ss_pred             HhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCC-cccccccccCCCCeeecCCCEEEEeecccccCCC
Q 012330          334 ATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVD-AKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKF  412 (466)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~-~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~  412 (466)
                      +.++.+         .++++++++|||++|||+|++|++|++|.. .|.+.+|.++ +||.|||||.|.++.+++||||+
T Consensus       332 ~~~~~~---------~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~-~g~~IP~Gt~v~~~~~~~~rd~~  401 (499)
T PLN03234        332 VIGDKG---------YVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKI-GGYDIPAKTIIQVNAWAVSRDTA  401 (499)
T ss_pred             HhCCCC---------CCCHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeE-CCEEECCCCEEEEehHhhhCCcc
Confidence            987542         258999999999999999999999999986 5777777666 99999999999999999999999


Q ss_pred             CccCCCCCcCCCcccCCCCCc-cccCCCccccCCCCcccccccccccc
Q 012330          413 IWGDDAEEFKPERWLDENGIF-QKESPFKFTAFQVSTVSRLLIKQFSK  459 (466)
Q Consensus       413 ~~g~~p~~F~P~Rfl~~~~~~-~~~~~~~~~~Fg~G~~~C~G~~~~~~  459 (466)
                      +||+||++||||||+++.+.. ....+..|+|||+|+|.|+|.. +|.
T Consensus       402 ~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~-~A~  448 (499)
T PLN03234        402 AWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMH-LGI  448 (499)
T ss_pred             cccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChH-HHH
Confidence            997799999999999764321 1223567999999999999877 543


No 10 
>PLN02183 ferulate 5-hydroxylase
Probab=100.00  E-value=6e-66  Score=494.47  Aligned_cols=403  Identities=23%  Similarity=0.347  Sum_probs=310.4

Q ss_pred             cccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHHH
Q 012330           31 QKSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYSI  109 (466)
Q Consensus        31 ~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~  109 (466)
                      +.+.||||+++|++|++..+..   ..+.++.+++++||+ |.+++++.++|+++||+++++++.++...|..++... .
T Consensus        34 ~~~~ppgp~~~Pl~G~l~~~~~---~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~-~  109 (516)
T PLN02183         34 RLPYPPGPKGLPIIGNMLMMDQ---LTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANI-A  109 (516)
T ss_pred             CCCCCcCCCCCCeeccHHhcCC---cchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCccc-c
Confidence            3478999999999999876532   256789999999995 7888999999999999999999998766677665322 1


Q ss_pred             HHhhc---cCceeecCCcchHHHHhh-hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHH
Q 012330          110 LKDLL---GDGIFTVDGEKWREQRKI-SSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSI  185 (466)
Q Consensus       110 ~~~~~---~~~l~~~~g~~w~~~R~~-l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i  185 (466)
                      .....   +.+++..+|+.|+++|++ +.+.|+.+.++.+.+ +. +.++.+++.+..  ..++++|+.+.+..++++++
T Consensus       110 ~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~-~~-~~~~~~~~~l~~--~~~~~v~~~~~~~~~~~~vi  185 (516)
T PLN02183        110 ISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWAS-VR-DEVDSMVRSVSS--NIGKPVNIGELIFTLTRNIT  185 (516)
T ss_pred             hhccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHH-HH-HHHHHHHHHHHh--cCCCcEeHHHHHHHHHHHHH
Confidence            11121   355777899999999998 578899999988774 54 467888888854  34678999999999999999


Q ss_pred             HHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhHh-hhhhhhHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012330          186 FKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTLW-RYVDIFWKIKKLL-NIGSEARLKQRIEVIDTFVYKIIRKKTDQM  263 (466)
Q Consensus       186 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  263 (466)
                      +.++||.+.+..   .   ..+.+.+......... .....++.+ .++ +....++..+..+.+.+++.++++++.++.
T Consensus       186 ~~~~fG~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  258 (516)
T PLN02183        186 YRAAFGSSSNEG---Q---DEFIKILQEFSKLFGAFNVADFIPWL-GWIDPQGLNKRLVKARKSLDGFIDDIIDDHIQKR  258 (516)
T ss_pred             HhHhhcCcccch---H---HHHHHHHHHHHHHhCCccHHHhcchh-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999876431   1   3455555444332211 111222222 222 222345677778888888888888877654


Q ss_pred             hhhhhhh-hccchhhHHHHhhcc------------------CChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHH
Q 012330          264 HDFQEEY-TSMKKEDILSRFLQV------------------TDPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQ  324 (466)
Q Consensus       264 ~~~~~~~-~~~~~~d~l~~ll~~------------------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~  324 (466)
                      ....... ......|+++.+++.                  .+++++.+++..+++||+|||+++++|++++|++||++|
T Consensus       259 ~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq  338 (516)
T PLN02183        259 KNQNADNDSEEAETDMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDL  338 (516)
T ss_pred             cccccccccccccccHHHHHHHhhhccccccccccccccCCCCHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHH
Confidence            3221100 011245888888861                  167889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCCCEEEEee
Q 012330          325 EKIVQEVKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDMVCYQA  404 (466)
Q Consensus       325 ~~l~~Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~v~~~~  404 (466)
                      +|+++||+++++..+         .++.+++++||||+|||+|++|++|++|...|++.+|+++ +||.|||||.|.++.
T Consensus       339 ~kl~~Ei~~v~~~~~---------~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~r~~~~d~~l-~g~~IPkGt~V~~~~  408 (516)
T PLN02183        339 KRVQQELADVVGLNR---------RVEESDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEV-AGYFIPKRSRVMINA  408 (516)
T ss_pred             HHHHHHHHHHcCCCC---------CCCHHHhccChHHHHHHHHHhccCCCccceeeeccCceeE-CCEEECCCCEEEEeh
Confidence            999999999987432         2589999999999999999999999999999988888777 999999999999999


Q ss_pred             cccccCCCCccCCCCCcCCCcccCCCCCccccCCCccccCCCCccccccccccccc
Q 012330          405 YAMGRMKFIWGDDAEEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKC  460 (466)
Q Consensus       405 ~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~  460 (466)
                      +++||||++| +||++|+||||+++++.........|+|||+|+|+|+|.. ||.-
T Consensus       409 ~~~hrd~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~-lA~~  462 (516)
T PLN02183        409 WAIGRDKNSW-EDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQ-LGLY  462 (516)
T ss_pred             hhhcCCcccc-CCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChH-HHHH
Confidence            9999999999 9999999999997653222224557999999999999876 5543


No 11 
>PLN02500 cytochrome P450 90B1
Probab=100.00  E-value=5.4e-66  Score=492.58  Aligned_cols=400  Identities=18%  Similarity=0.203  Sum_probs=304.4

Q ss_pred             cCCCCCCCCCCcchhhhhhcc--hhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHHH
Q 012330           33 SGNKQKKYHPIGGTVFNQLLN--FNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYSI  109 (466)
Q Consensus        33 ~~~pgp~~~p~~G~~~~~~~~--~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~  109 (466)
                      +.||||+++|++|+++.+...  .+.++.++.+++++||+ |.++++++++|+++||+++++++.+++..|..+.. . .
T Consensus        38 ~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~-~-~  115 (490)
T PLN02500         38 NLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYP-R-S  115 (490)
T ss_pred             CCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCc-h-H
Confidence            689999999999998655432  23577889999999995 77888999999999999999999877555643321 1 1


Q ss_pred             HHhhcc-CceeecCCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHHHHH
Q 012330          110 LKDLLG-DGIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSIFKV  188 (466)
Q Consensus       110 ~~~~~~-~~l~~~~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i~~~  188 (466)
                      ....++ .+++..+|+.|+++|+++.+.|+..+++......+.+....+++.+.    .+..+|+.+.+..+++++++.+
T Consensus       116 ~~~~~g~~~~~~~~g~~wr~~Rk~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~vd~~~~~~~~~~~vi~~~  191 (490)
T PLN02500        116 IGGILGKWSMLVLVGDMHRDMRSISLNFLSHARLRTHLLKEVERHTLLVLDSWK----ENSTFSAQDEAKKFTFNLMAKH  191 (490)
T ss_pred             HHHHhCcccccccCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC----CCCCEEehHHHHHHHHHHHHHH
Confidence            223345 46788899999999999999999999887332356666666666553    2457999999999999999999


Q ss_pred             HhcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhhhhhHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 012330          189 AFGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYVDIFWKIKKLLNIGSEARLKQRIEVIDTFVYKIIRKKTDQMHDFQE  268 (466)
Q Consensus       189 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  268 (466)
                      +||.+.+..     +...+...+.........     .+   ..++....++..++.+.+.+++.+.++++++..+.+..
T Consensus       192 ~fg~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~---~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  258 (490)
T PLN02500        192 IMSMDPGEE-----ETEQLKKEYVTFMKGVVS-----AP---LNFPGTAYRKALKSRATILKFIERKMEERIEKLKEEDE  258 (490)
T ss_pred             HhCCCCCch-----HHHHHHHHHHHHHhhhhc-----ch---hcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            999865321     112223333322221100     00   11222234566677788888999999888765432211


Q ss_pred             hhhccchhhHHHHhhccC--ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCCCcchhhhh
Q 012330          269 EYTSMKKEDILSRFLQVT--DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATGAKDISDFLKV  346 (466)
Q Consensus       269 ~~~~~~~~d~l~~ll~~~--~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~  346 (466)
                         .....|+++.+++..  +++++.+++..+++||+|||+++++|++++|++||++|+|+++||+.+.+......    
T Consensus       259 ---~~~~~d~l~~ll~~~~ls~~~i~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~----  331 (490)
T PLN02500        259 ---SVEEDDLLGWVLKHSNLSTEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSG----  331 (490)
T ss_pred             ---CCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCC----
Confidence               012468999999764  89999999999999999999999999999999999999999999999874211000    


Q ss_pred             cCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCCCEEEEeecccccCCCCccCCCCCcCCCcc
Q 012330          347 AGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKFIWGDDAEEFKPERW  426 (466)
Q Consensus       347 ~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rf  426 (466)
                      ...++.+++++|||++|||+|++|++|++|...|.+.+|+++ +||.|||||.|.++.+++||||++| +||++|+||||
T Consensus       332 ~~~~~~~d~~~lpyl~avikEtlRl~P~~~~~~R~~~~d~~~-~G~~IPkGt~V~~~~~~~hrdp~~~-~dP~~F~PeRf  409 (490)
T PLN02500        332 ESELNWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRY-KGYDIPSGWKVLPVIAAVHLDSSLY-DQPQLFNPWRW  409 (490)
T ss_pred             CCCCCHHHhccCHHHHHHHHHHHhcCCCccCeeeEeCCCcee-CCEEECCCCEEEechhhcccCcccC-CCccccChhhc
Confidence            012699999999999999999999999999988888888777 9999999999999999999999999 99999999999


Q ss_pred             cCCCCCcc-----ccCCCccccCCCCcccccccccccccc
Q 012330          427 LDENGIFQ-----KESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       427 l~~~~~~~-----~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      +++++...     ...+..|+|||+|+|.|+|+. ||...
T Consensus       410 l~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~-~A~~e  448 (490)
T PLN02500        410 QQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSE-LAKLE  448 (490)
T ss_pred             cCCCcccccccccCCCCCCCcCCCCCCCCCCcHH-HHHHH
Confidence            97643211     113567999999999999876 66543


No 12 
>PLN00168 Cytochrome P450; Provisional
Probab=100.00  E-value=2.2e-65  Score=490.92  Aligned_cols=411  Identities=20%  Similarity=0.251  Sum_probs=312.2

Q ss_pred             ccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHHHH
Q 012330           32 KSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYSIL  110 (466)
Q Consensus        32 ~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~  110 (466)
                      .+.||||+++|++|++..+.....+++.++.+++++||+ |.+++++.++++++||+++++++.++...|..++...  .
T Consensus        34 ~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~--~  111 (519)
T PLN00168         34 RRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVA--S  111 (519)
T ss_pred             CCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCccc--c
Confidence            468999999999999875543334578899999999995 7888999999999999999999988767787776532  1


Q ss_pred             Hhhcc--Cceee--cCCcchHHHHh-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHH
Q 012330          111 KDLLG--DGIFT--VDGEKWREQRK-ISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSI  185 (466)
Q Consensus       111 ~~~~~--~~l~~--~~g~~w~~~R~-~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i  185 (466)
                      ...++  .+++.  .+|+.|+++|| ++.+.|+.++++.+.+ .+.+.++.+++.+.+.+..+..+|+.+.+..++.+++
T Consensus       112 ~~~~~~~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~-~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~ii  190 (519)
T PLN00168        112 SRLLGESDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAP-ARAWVRRVLVDKLRREAEDAAAPRVVETFQYAMFCLL  190 (519)
T ss_pred             hhhhccCCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence            12223  23444  68999999986 7889999999999995 7888899999999875545557899999999999999


Q ss_pred             HHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhH--hhhhhhhHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012330          186 FKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTL--WRYVDIFWKIKKLLNIGSEARLKQRIEVIDTFVYKIIRKKTDQM  263 (466)
Q Consensus       186 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  263 (466)
                      +.++||.+++..     ....+...+........  ......+|.+.+......+++..+..+.+.+++.++++++++..
T Consensus       191 ~~~~fG~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  265 (519)
T PLN00168        191 VLMCFGERLDEP-----AVRAIAAAQRDWLLYVSKKMSVFAFFPAVTKHLFRGRLQKALALRRRQKELFVPLIDARREYK  265 (519)
T ss_pred             HHHHcCCCcChh-----hHHHHHHHHHHHHHHhcCCCCHHHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999887521     11122222222211111  11122223222222222345566778888999999998887643


Q ss_pred             hhhhh-h-hh---ccchhhHHHHhhccC---------ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHH
Q 012330          264 HDFQE-E-YT---SMKKEDILSRFLQVT---------DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQ  329 (466)
Q Consensus       264 ~~~~~-~-~~---~~~~~d~l~~ll~~~---------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~  329 (466)
                      ....+ . ..   .....|+++.|++..         +++++.+++..+++||+|||+++++|++++|++||++|+|+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~kl~~  345 (519)
T PLN00168        266 NHLGQGGEPPKKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLHD  345 (519)
T ss_pred             hhccccCccccccccccccHHHHHHhhhccccccCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            21100 0 00   011458899988531         7889999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCC-cccccccccCCCCeeecCCCEEEEeecccc
Q 012330          330 EVKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVD-AKMCFSDDTLPDGFSVRKGDMVCYQAYAMG  408 (466)
Q Consensus       330 Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~-~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~  408 (466)
                      ||+.+.+...        +.++.+++++||||+|||+|++|++|+++.. +|.+.+|.++ +||.||||+.|.++.+++|
T Consensus       346 Ei~~v~~~~~--------~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~-~g~~IpkGt~v~~~~~~~~  416 (519)
T PLN00168        346 EIKAKTGDDQ--------EEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEV-GGYLIPKGATVNFMVAEMG  416 (519)
T ss_pred             HHHHHhCCCC--------CCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccC-CCEEECCCCEEEEChHHHh
Confidence            9999997532        2268999999999999999999999999876 6777777777 9999999999999999999


Q ss_pred             cCCCCccCCCCCcCCCcccCCCCCc----cccCCCccccCCCCcccccccccccccc
Q 012330          409 RMKFIWGDDAEEFKPERWLDENGIF----QKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       409 ~d~~~~g~~p~~F~P~Rfl~~~~~~----~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      |||++| +||++|+||||+++....    ....+..|+|||+|+|+|+|.. ||..+
T Consensus       417 ~d~~~~-~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~-lA~~e  471 (519)
T PLN00168        417 RDEREW-ERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLG-IAMLH  471 (519)
T ss_pred             cCcccc-CCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHH-HHHHH
Confidence            999999 999999999999753211    1123457999999999999877 66544


No 13 
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00  E-value=8.2e-65  Score=486.77  Aligned_cols=404  Identities=24%  Similarity=0.365  Sum_probs=316.7

Q ss_pred             cCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHHHHH
Q 012330           33 SGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYSILK  111 (466)
Q Consensus        33 ~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~  111 (466)
                      +.||||+++|++|++..+..   +++.++.+++++||+ |.++++++++++++||+++++++.++...|.+++... ...
T Consensus        34 ~~pPgp~~~P~iG~~~~~~~---~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~-~~~  109 (517)
T PLN02687         34 PLPPGPRGWPVLGNLPQLGP---KPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNS-GAE  109 (517)
T ss_pred             CCCccCCCCCccccHHhcCC---chhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCcc-chh
Confidence            57999999999999877743   378999999999995 7888999999999999999999988767788765432 111


Q ss_pred             hh---ccCceeecCCcchHHHHhhhh-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHHHH
Q 012330          112 DL---LGDGIFTVDGEKWREQRKISS-HEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSIFK  187 (466)
Q Consensus       112 ~~---~~~~l~~~~g~~w~~~R~~l~-~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i~~  187 (466)
                      .+   .+.+++..+|+.|+++|+++. +.|+.++++.+.+ .+++.++.+++.+.+.. .++++|+.+.+..+++++++.
T Consensus       110 ~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~-~i~~~~~~l~~~l~~~~-~~~~vd~~~~~~~~t~dvi~~  187 (517)
T PLN02687        110 HMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRH-VREEEVALLVRELARQH-GTAPVNLGQLVNVCTTNALGR  187 (517)
T ss_pred             hhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHH-HHHHHHHHHHHHHHHhc-CCCceeHHHHHHHHHHHHHHH
Confidence            11   123456678999999999998 7899999999885 88889999999997643 456899999999999999999


Q ss_pred             HHhcCCCcccCCCCCCcchhHHHHHHHHHHhHhh-hhhhhHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012330          188 VAFGVELDSVCGSNEEGTRFSSAFDDASAMTLWR-YVDIFWKIKKLLNI-GSEARLKQRIEVIDTFVYKIIRKKTDQMHD  265 (466)
Q Consensus       188 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  265 (466)
                      .+||.++...+.. +....+.+.+.......... ....+|.+ .+++. ...++..+..+.+.+++.+.++++++....
T Consensus       188 ~~fG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~P~l-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~  265 (517)
T PLN02687        188 AMVGRRVFAGDGD-EKAREFKEMVVELMQLAGVFNVGDFVPAL-RWLDLQGVVGKMKRLHRRFDAMMNGIIEEHKAAGQT  265 (517)
T ss_pred             HHhCccccccCCc-chHHHHHHHHHHHHHHhccCcHHHHhhhH-HHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999987543321 12244555555544322211 11222322 23322 224566677788888899999888765432


Q ss_pred             hhhhhhccchhhHHHHhhccC------------ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 012330          266 FQEEYTSMKKEDILSRFLQVT------------DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKE  333 (466)
Q Consensus       266 ~~~~~~~~~~~d~l~~ll~~~------------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~  333 (466)
                      ..     ....|+++.+++..            +++++.+++..+++||+|||+++++|++++|++||++|+|+++||+.
T Consensus       266 ~~-----~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~~~~kl~~Ei~~  340 (517)
T PLN02687        266 GS-----EEHKDLLSTLLALKREQQADGEGGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQEELDA  340 (517)
T ss_pred             cC-----cccccHHHHHHHhhccccccccccCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            11     12468999998631            67899999999999999999999999999999999999999999999


Q ss_pred             HhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCC-CcccccccccCCCCeeecCCCEEEEeecccccCCC
Q 012330          334 ATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPV-DAKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKF  412 (466)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~-~~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~  412 (466)
                      +.+..+         .++.+++++||||+|||+|+||++|+++. ..|.+.+|.++ +||.||+||.|.++.+++||||+
T Consensus       341 ~~~~~~---------~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~-~g~~ip~Gt~v~~~~~~~h~d~~  410 (517)
T PLN02687        341 VVGRDR---------LVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEI-NGYHIPKGATLLVNVWAIARDPE  410 (517)
T ss_pred             HcCCCC---------CCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeE-CCEEECCCCEEEEecHHhcCCcc
Confidence            987542         25899999999999999999999999997 57888777666 99999999999999999999999


Q ss_pred             CccCCCCCcCCCcccCCCCCcc---ccCCCccccCCCCcccccccccccccc
Q 012330          413 IWGDDAEEFKPERWLDENGIFQ---KESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       413 ~~g~~p~~F~P~Rfl~~~~~~~---~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      +| +||++|+||||++++....   ...+..|+|||+|+|.|+|.. ||..+
T Consensus       411 ~~-~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~-~A~~e  460 (517)
T PLN02687        411 QW-PDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLS-WGLRM  460 (517)
T ss_pred             cC-CCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChH-HHHHH
Confidence            99 9999999999997543211   123457999999999999876 66544


No 14 
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00  E-value=1.2e-64  Score=482.54  Aligned_cols=417  Identities=20%  Similarity=0.300  Sum_probs=317.6

Q ss_pred             HHHHHHHHhh--hcccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcC
Q 012330           20 LVVQIVTKTL--TQKSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTN   96 (466)
Q Consensus        20 ~~~~~~~~~~--~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~   96 (466)
                      +..+++++.+  ...+.||||+++|++|++..+..   .++.++.+++++||+ |.++++++++|+++||+++++++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~pPgp~~~Pl~G~l~~~~~---~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~   92 (504)
T PLN00110         16 ITRFFIRSLLPKPSRKLPPGPRGWPLLGALPLLGN---MPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTL   92 (504)
T ss_pred             HHHHHHHHHhhcccCCCcccCCCCCeeechhhcCC---chHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhc
Confidence            3344444433  34478999999999999766632   378899999999995 77888889999999999999999987


Q ss_pred             CCCCCCchhhHHHHHhhcc--CceeecCCcchHHHHhhhhh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeh
Q 012330           97 FDNYGKGSYNYSILKDLLG--DGIFTVDGEKWREQRKISSH-EFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDI  173 (466)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~--~~l~~~~g~~w~~~R~~l~~-~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl  173 (466)
                      ...|.+++..........+  .+++..+|+.|+++|+.+.+ .|+.++++.+.+ .+.+.+..+++.+.+....++++|+
T Consensus        93 ~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~-~i~~~~~~~~~~l~~~~~~g~~~~~  171 (504)
T PLN00110         93 DINFSNRPPNAGATHLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQ-VRTVELGHMLRAMLELSQRGEPVVV  171 (504)
T ss_pred             chhhcCCCCccchhhhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhH-HHHHHHHHHHHHHHHhccCCCcEeH
Confidence            6678777643322222222  45677889999999999985 699999999885 5666777788888765556778999


Q ss_pred             HHhHHHHHHHHHHHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhHhh-hhhhhHHHHHHhcc-CchHHHHHHHHHHHHH
Q 012330          174 QDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTLWR-YVDIFWKIKKLLNI-GSEARLKQRIEVIDTF  251 (466)
Q Consensus       174 ~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~  251 (466)
                      .+++..+++++++.++||.++....  .....++.+++.......... ....+|.+ .+++. ...++..+..+.+.++
T Consensus       172 ~~~~~~~~~~vi~~~~fg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-~~l~~~~~~~~~~~~~~~~~~~  248 (504)
T PLN00110        172 PEMLTFSMANMIGQVILSRRVFETK--GSESNEFKDMVVELMTTAGYFNIGDFIPSI-AWMDIQGIERGMKHLHKKFDKL  248 (504)
T ss_pred             HHHHHHHHHHHHHHHHhCCcccccC--chhHHHHHHHHHHHHHHhccccHHHHcchH-hhhCcchHHHHHHHHHHHHHHH
Confidence            9999999999999999999862111  112245666665544322211 11222222 22222 2235566677778888


Q ss_pred             HHHHHHHHHHhhhhhhhhhhccchhhHHHHhhccC--------ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHH
Q 012330          252 VYKIIRKKTDQMHDFQEEYTSMKKEDILSRFLQVT--------DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAV  323 (466)
Q Consensus       252 ~~~~i~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~--------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~  323 (466)
                      +.+.++++.+.....      ....|+++.+++..        +++++.+++..+++||+|||+++++|++++|++||++
T Consensus       249 ~~~~i~~~~~~~~~~------~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~  322 (504)
T PLN00110        249 LTRMIEEHTASAHER------KGNPDFLDVVMANQENSTGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSI  322 (504)
T ss_pred             HHHHHHHHHhhcccc------ccCCChhhHHhhcccccCCCCCCHHHHHHHHHhhhcccccchHHHHHHHHHHHHhCHHH
Confidence            888888776543211      12458999998642        6789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCC-CcccccccccCCCCeeecCCCEEEE
Q 012330          324 QEKIVQEVKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPV-DAKMCFSDDTLPDGFSVRKGDMVCY  402 (466)
Q Consensus       324 ~~~l~~Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~-~~r~~~~~~~~~~g~~ip~G~~v~~  402 (466)
                      |+|+++|++++.+..+         .++.+++++||||+|||+|++|++|+++. ..|.+.+|.++ +||.|||||.|.+
T Consensus       323 ~~kl~~Ei~~~~~~~~---------~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~-~g~~Ip~Gt~V~~  392 (504)
T PLN00110        323 LKRAHEEMDQVIGRNR---------RLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEV-NGYYIPKNTRLSV  392 (504)
T ss_pred             HHHHHHHHHHHhCCCC---------CCCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeee-CCEEECCCCEEEE
Confidence            9999999999987542         25899999999999999999999999997 57877777666 9999999999999


Q ss_pred             eecccccCCCCccCCCCCcCCCcccCCCCCcccc--CCCccccCCCCcccccccccccccc
Q 012330          403 QAYAMGRMKFIWGDDAEEFKPERWLDENGIFQKE--SPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       403 ~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~--~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      +.+++|+||++| +||++|+||||++++......  ....++|||+|+|.|+|.. ||..+
T Consensus       393 ~~~~~h~d~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~-~A~~e  451 (504)
T PLN00110        393 NIWAIGRDPDVW-ENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTR-MGIVL  451 (504)
T ss_pred             eHHHhcCChhhc-CCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHH-HHHHH
Confidence            999999999999 999999999999754321111  2346999999999999876 66544


No 15 
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00  E-value=1.1e-64  Score=487.01  Aligned_cols=430  Identities=20%  Similarity=0.304  Sum_probs=322.0

Q ss_pred             HHHHHHHHHHHHHHHhhhc--ccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhH
Q 012330           13 LAIALAILVVQIVTKTLTQ--KSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANV   89 (466)
Q Consensus        13 ~~~~l~~~~~~~~~~~~~~--~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i   89 (466)
                      ++++|..++++++.+...+  .+.||||+++|++|++..+..   +++.++.+++++||+ |.+++++.++++++||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~ppgp~~~pl~G~~~~~~~---~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~   86 (514)
T PLN03112         10 FSVLIFNVLIWRWLNASMRKSLRLPPGPPRWPIVGNLLQLGP---LPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELI   86 (514)
T ss_pred             HHHHHHHHHHHHHccccccCCCCCccCCCCCCeeeeHHhcCC---chHHHHHHHHHHhCCeEEEEecCccEEEECCHHHH
Confidence            3333333444444443222  278999999999999877643   478899999999996 6778888999999999999


Q ss_pred             HHhhhcCCCCCCCchhhHHHHHhhcc--CceeecCCcchHHHHhhhh-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012330           90 EYMLKTNFDNYGKGSYNYSILKDLLG--DGIFTVDGEKWREQRKISS-HEFSTKVLRDFSSAAFRKNAAKLAQLLSEAAN  166 (466)
Q Consensus        90 ~~il~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~g~~w~~~R~~l~-~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~  166 (466)
                      ++++.++...|++++.........++  .+++..+|+.|+++|+.+. +.|+.++++.+.+ .+.+.++.+++.+.+...
T Consensus        87 ~~vl~~~~~~f~~~~~~~~~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~-~~~~~~~~lv~~l~~~~~  165 (514)
T PLN03112         87 REILLRQDDVFASRPRTLAAVHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAK-HRAEEARHLIQDVWEAAQ  165 (514)
T ss_pred             HHHHHhCCcccccCCCcccceeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhH-HHHHHHHHHHHHHHHhhc
Confidence            99998776788887654322222333  3345678999999999965 6899999999885 777788888887655444


Q ss_pred             CCCceehHHhHHHHHHHHHHHHHhcCCCcccCCCC-CCcchhHHHHHHHHHHhHhhhhhhhHHHHHHh-ccCchHHHHHH
Q 012330          167 SDKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSN-EEGTRFSSAFDDASAMTLWRYVDIFWKIKKLL-NIGSEARLKQR  244 (466)
Q Consensus       167 ~~~~vdl~~~~~~~~~~~i~~~~fG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~  244 (466)
                      .+.++|+.+.+..+++++++.++||.++....... +....+..++..............+.++..++ +....++..+.
T Consensus       166 ~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  245 (514)
T PLN03112        166 TGKPVNLREVLGAFSMNNVTRMLLGKQYFGAESAGPKEAMEFMHITHELFRLLGVIYLGDYLPAWRWLDPYGCEKKMREV  245 (514)
T ss_pred             cCCeeeHHHHHHHHHHHHHHHHHcCCccccccccchHHHHHHHHHHHHHHHHcCCCcHHHhChHHHhcCcccHHHHHHHH
Confidence            56789999999999999999999999874332111 12234555544443222111111111122222 22234666777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHhhccC--------ChhHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 012330          245 IEVIDTFVYKIIRKKTDQMHDFQEEYTSMKKEDILSRFLQVT--------DPKYLRDIILNFVIAGKDTTAATLSWFIYM  316 (466)
Q Consensus       245 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~--------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~  316 (466)
                      .+.+.+++...++++++..+....   .....|+++.++++.        +++++.+++..+++||+|||+++++|++++
T Consensus       246 ~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~  322 (514)
T PLN03112        246 EKRVDEFHDKIIDEHRRARSGKLP---GGKDMDFVDVLLSLPGENGKEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAE  322 (514)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccc---CCccchHHHHHHHhhccccccCCCHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            888888888888887764322110   012468999999741        678999999999999999999999999999


Q ss_pred             HhcChHHHHHHHHHHHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCC-cccccccccCCCCeeec
Q 012330          317 LCKHPAVQEKIVQEVKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVD-AKMCFSDDTLPDGFSVR  395 (466)
Q Consensus       317 l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~-~r~~~~~~~~~~g~~ip  395 (466)
                      |++||++|+++++||+++.+..+         .++.+++++|||++|||+|++|++|+++.. .|.+.+|.++ +||.||
T Consensus       323 L~~~P~vq~kl~~Ei~~~~~~~~---------~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i-~g~~IP  392 (514)
T PLN03112        323 VIKNPRVLRKIQEELDSVVGRNR---------MVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTI-NGYYIP  392 (514)
T ss_pred             HHhChHHHHHHHHHHHHhcCCCC---------cCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeE-cCEEeC
Confidence            99999999999999999987542         368999999999999999999999999975 6888777666 999999


Q ss_pred             CCCEEEEeecccccCCCCccCCCCCcCCCcccCCCCC---ccccCCCccccCCCCcccccccccccccc
Q 012330          396 KGDMVCYQAYAMGRMKFIWGDDAEEFKPERWLDENGI---FQKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       396 ~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~---~~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      |||.|.++.+++||||++| +||++|+||||.++.+.   .....+..|+|||+|+|.|+|.. ||.-.
T Consensus       393 kGt~v~~~~~~~h~d~~~~-~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~-~A~~e  459 (514)
T PLN03112        393 AKTRVFINTHGLGRNTKIW-DDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAP-LGVTM  459 (514)
T ss_pred             CCCEEEEehHHhhCCcccC-CChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHH-HHHHH
Confidence            9999999999999999999 99999999998764321   11123457999999999999776 65443


No 16 
>PLN02966 cytochrome P450 83A1
Probab=100.00  E-value=5.7e-65  Score=486.57  Aligned_cols=405  Identities=23%  Similarity=0.361  Sum_probs=305.5

Q ss_pred             cCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHHHHH
Q 012330           33 SGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYSILK  111 (466)
Q Consensus        33 ~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~  111 (466)
                      +.||||+++|++|+++.+..  .+++.++.+++++||+ |.+++++.++++++||+.+++++.++...|.+++.......
T Consensus        29 ~~ppgp~~~p~~G~l~~l~~--~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~~~~  106 (502)
T PLN02966         29 KLPPGPSPLPVIGNLLQLQK--LNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGHEF  106 (502)
T ss_pred             CCCcCCCCCCeeccHHhcCC--CChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCcccee
Confidence            67999999999999887632  3478899999999996 67788899999999999999999876566766543321110


Q ss_pred             hhcc-Cce-eecCCcchHHHHhh-hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHHHHH
Q 012330          112 DLLG-DGI-FTVDGEKWREQRKI-SSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSIFKV  188 (466)
Q Consensus       112 ~~~~-~~l-~~~~g~~w~~~R~~-l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i~~~  188 (466)
                      ...+ ..+ +..+|+.|+++|+. +.+.|+.++++.+.+ .+++.++.+++.|.+.+..++++|+.+++..+++++++.+
T Consensus       107 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~-~i~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~t~dvi~~~  185 (502)
T PLN02966        107 ISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKH-VREEEARRMMDKINKAADKSEVVDISELMLTFTNSVVCRQ  185 (502)
T ss_pred             eccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCceeHHHHHHHHHHHHHHHH
Confidence            0112 223 44678999999998 778999999999884 8888999999999876556678999999999999999999


Q ss_pred             HhcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhh-hhhHHHHHHhc-cCc-hHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012330          189 AFGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYV-DIFWKIKKLLN-IGS-EARLKQRIEVIDTFVYKIIRKKTDQMHD  265 (466)
Q Consensus       189 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~  265 (466)
                      +||.+++..++   ....+.+++...........+ ..++ +...+. +.. .+...+..+...+++.+.+++..+....
T Consensus       186 ~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  261 (502)
T PLN02966        186 AFGKKYNEDGE---EMKRFIKILYGTQSVLGKIFFSDFFP-YCGFLDDLSGLTAYMKECFERQDTYIQEVVNETLDPKRV  261 (502)
T ss_pred             HhCCccCccch---HHHHHHHHHHHHHHHhCcccHHHhhc-hhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99998864321   223444444443322211111 1122 111111 111 1233345556667777777665543211


Q ss_pred             hhhhhhccchhhHHHHhhccC---------ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhC
Q 012330          266 FQEEYTSMKKEDILSRFLQVT---------DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATG  336 (466)
Q Consensus       266 ~~~~~~~~~~~d~l~~ll~~~---------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~  336 (466)
                      .      ....++++.+++..         +++++.+++..+++||+|||+++++|++++|++||++|+|+++||+++.+
T Consensus       262 ~------~~~~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~  335 (502)
T PLN02966        262 K------PETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMK  335 (502)
T ss_pred             c------cccccHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhc
Confidence            1      12457888888421         67899999999999999999999999999999999999999999999986


Q ss_pred             CCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCC-cccccccccCCCCeeecCCCEEEEeecccccCCCCcc
Q 012330          337 AKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVD-AKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKFIWG  415 (466)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~-~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~~~g  415 (466)
                      ....       ..++++++++||||+|||+|+||++|++|.. .|.+.+|.++ +||.|||||.|.++.+++||||++||
T Consensus       336 ~~~~-------~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l-~g~~IP~Gt~V~~~~~~~~rdp~~~g  407 (502)
T PLN02966        336 EKGS-------TFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKI-AGYDIPAGTTVNVNAWAVSRDEKEWG  407 (502)
T ss_pred             ccCC-------CcCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeE-ccEEECCCCEEEEecccccCCccccc
Confidence            4321       1258999999999999999999999999985 6777777665 99999999999999999999999999


Q ss_pred             CCCCCcCCCcccCCCCCccccCCCccccCCCCccccccccccccc
Q 012330          416 DDAEEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKC  460 (466)
Q Consensus       416 ~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~  460 (466)
                      |||++|+||||++++... ...+..|+|||+|+|+|+|.. ||..
T Consensus       408 ~dP~~F~PeRwl~~~~~~-~~~~~~~~pFg~G~R~C~G~~-~A~~  450 (502)
T PLN02966        408 PNPDEFRPERFLEKEVDF-KGTDYEFIPFGSGRRMCPGMR-LGAA  450 (502)
T ss_pred             CChhhCChhhhcCCCCCc-CCCcCCccCCCCCCCCCCCHH-HHHH
Confidence            999999999999754321 124567999999999999876 6543


No 17 
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=5e-64  Score=445.15  Aligned_cols=408  Identities=23%  Similarity=0.341  Sum_probs=346.4

Q ss_pred             cCCCCCCCCCCcchhhhhhc-chhhHHHHHHHHHhhcCc-eEEe-cCCcceEEecChhhHHHhhhcCCCCCCCch-hhH-
Q 012330           33 SGNKQKKYHPIGGTVFNQLL-NFNRLHHYMTDLAAKHGT-YRLL-GPFRSEVYSSDPANVEYMLKTNFDNYGKGS-YNY-  107 (466)
Q Consensus        33 ~~~pgp~~~p~~G~~~~~~~-~~~~~~~~~~~~~~~yg~-~~~~-~~~~~~vvv~~~~~i~~il~~~~~~~~~~~-~~~-  107 (466)
                      ..+|||+++|++|.+..+.. ...+.++....++++||+ |... +|+...|.+.+|+.++.+++.+ +.++.++ .+. 
T Consensus        50 ~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~E-G~~P~Rp~~~~~  128 (519)
T KOG0159|consen   50 EEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNE-GKYPFRPLLIEP  128 (519)
T ss_pred             hhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcC-CCCCCcccccch
Confidence            37899999999998774222 345789999999999996 6666 7889999999999999999987 6667774 211 


Q ss_pred             -HHHHhhcc--CceeecCCcchHHHHhhhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCceehHHhHHHH
Q 012330          108 -SILKDLLG--DGIFTVDGEKWREQRKISSHE-FSTKVLRDFSSAAFRKNAAKLAQLLSEAAN---SDKILDIQDLFMKS  180 (466)
Q Consensus       108 -~~~~~~~~--~~l~~~~g~~w~~~R~~l~~~-~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~---~~~~vdl~~~~~~~  180 (466)
                       ...++.++  .|++..+|+.|++.|..+.+. +.++.++.+.+ .+++.++.+++.+....+   ...+.|+.+.+.++
T Consensus       129 w~~~rd~~~~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~-~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~w  207 (519)
T KOG0159|consen  129 WVAYRDFRGGVCGLFLLEGPEWQRLRSALNPLLLQPQAVRRYLP-QLNAVSDDFVERLRAQRDPERGELVPDFAQELYRW  207 (519)
T ss_pred             hhhhHHhhccCCCcccCCCHHHHHHHHHhchhhcCHHHHHHHhh-HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence             22344444  689999999999999999987 79999999995 888999999999987654   34588999999999


Q ss_pred             HHHHHHHHHhcCCCcccCCC-CCCcchhHHHHHHHHHHhHhhhhhhhHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Q 012330          181 TLDSIFKVAFGVELDSVCGS-NEEGTRFSSAFDDASAMTLWRYVDIFWKIKKLLNIGSEARLKQRIEVIDTFVYKIIRKK  259 (466)
Q Consensus       181 ~~~~i~~~~fG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  259 (466)
                      ++++|+.++||.+++..... .++...+++++..++.......+.  |.+.++++++.++++.++.+.+.+++..+|++.
T Consensus       208 slEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s~~l~~~--p~l~r~~~t~~wk~~~~~~D~i~~~~~~~Id~~  285 (519)
T KOG0159|consen  208 SLESICLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESSAQLMLM--PSLWRYFPTKVWKDFVRAWDQIFDVGDKYIDNA  285 (519)
T ss_pred             HHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhHHHHHhc--chHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998763 366788888888887766544333  468888999999999999999999999999999


Q ss_pred             HHhhhhhhhhhhccc-hhhHHHHhhccC-ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCC
Q 012330          260 TDQMHDFQEEYTSMK-KEDILSRFLQVT-DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATGA  337 (466)
Q Consensus       260 ~~~~~~~~~~~~~~~-~~d~l~~ll~~~-~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~  337 (466)
                      .+..+.+....  .+ ...++..|..+. +.+++..++++++.||.|||+.++.|+||+|++||++|++|++|+..++..
T Consensus       286 l~~l~~~~~~~--~~~~~~l~~~L~~~~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~p~  363 (519)
T KOG0159|consen  286 LEELEKQDSAG--SEYTGSLLELLLRKELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAVLPS  363 (519)
T ss_pred             HHHHHhccccc--cchhHHHHHHHHHccCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhCCC
Confidence            99887655322  12 334555555544 999999999999999999999999999999999999999999999999877


Q ss_pred             CCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCCCEEEEeecccccCCCCccCC
Q 012330          338 KDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKFIWGDD  417 (466)
Q Consensus       338 ~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~~~g~~  417 (466)
                      ..        ..++.+++.+||||.|||||++||+|.+|.+.|...+|.++ +||.|||||.|.++.+.+.+||++| ++
T Consensus       364 ~~--------~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~R~l~~D~vL-~gY~vPagT~V~l~~~~~~r~~~~F-~~  433 (519)
T KOG0159|consen  364 GN--------SELTQKALTNMPYLRACIKETLRLYPVVPGNGRVLPKDLVL-SGYHVPAGTLVVLFLYVLGRNPAYF-PD  433 (519)
T ss_pred             cc--------cccchHHHhhCHHHHHHHHhhhceeccccccccccchhcee-ccceecCCCeEEEeehhhccChhhC-CC
Confidence            53        23688999999999999999999999999999999999888 9999999999999999999999999 99


Q ss_pred             CCCcCCCcccCCCCCccccCCCccccCCCCcccccccccccc
Q 012330          418 AEEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSK  459 (466)
Q Consensus       418 p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~  459 (466)
                      |++|+||||++++.  ++.++..++|||.|+|+|+|.+ +|.
T Consensus       434 p~~F~PeRWL~~~~--~~~~pF~~LPFGfG~R~C~GRR-iAE  472 (519)
T KOG0159|consen  434 PEEFLPERWLKPST--KTIHPFASLPFGFGPRMCLGRR-IAE  472 (519)
T ss_pred             ccccChhhhccccc--CCCCCceecCCCCCccccchHH-HHH
Confidence            99999999999864  3457888999999999999877 554


No 18 
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00  E-value=7.9e-64  Score=480.13  Aligned_cols=413  Identities=21%  Similarity=0.314  Sum_probs=298.5

Q ss_pred             hhhcccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhh
Q 012330           28 TLTQKSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYN  106 (466)
Q Consensus        28 ~~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~  106 (466)
                      .+++.+.||||+++|++|++..+..+  ..+..+.+++++||+ |.++++++++|+++||+.+++++.++...|.+++..
T Consensus        25 ~~~~~~~pPgp~~~p~~g~l~~~~~~--~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~  102 (503)
T PLN02394         25 RGKKLKLPPGPAAVPIFGNWLQVGDD--LNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRN  102 (503)
T ss_pred             hcCcCCCCcCCCCCCeeeeHHhcCCC--chhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCc
Confidence            33445799999999999998766433  257899999999996 678888899999999999999998765666655422


Q ss_pred             HHHHHhhcc---CceeecCCcchHHHHhhhh-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceehHHhHHHHH
Q 012330          107 YSILKDLLG---DGIFTVDGEKWREQRKISS-HEFSTKVLRDFSSAAFRKNAAKLAQLLSEAAN-SDKILDIQDLFMKST  181 (466)
Q Consensus       107 ~~~~~~~~~---~~l~~~~g~~w~~~R~~l~-~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~-~~~~vdl~~~~~~~~  181 (466)
                      . .+..+.+   ++++..+|+.|+++|+.+. +.|+.++++.+.+ .+++.++.+++.+.+... .++.+|+.+.+..++
T Consensus       103 ~-~~~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~-~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~  180 (503)
T PLN02394        103 V-VFDIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRY-GWEEEADLVVEDVRANPEAATEGVVIRRRLQLMM  180 (503)
T ss_pred             c-hHhHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhH-HHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHH
Confidence            1 2222323   3467788999999999996 8899999988874 778888888888876432 245699999999999


Q ss_pred             HHHHHHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhH---hhhhhhhHHHHHHhccCchHHHHHHHHHHHH-HHHHHHH
Q 012330          182 LDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTL---WRYVDIFWKIKKLLNIGSEARLKQRIEVIDT-FVYKIIR  257 (466)
Q Consensus       182 ~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~i~  257 (466)
                      +++++.++||.+++..++.  ....+............   ......++.+.+... ...+..........+ +....++
T Consensus       181 ~dvi~~~~fG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~  257 (503)
T PLN02394        181 YNIMYRMMFDRRFESEDDP--LFLKLKALNGERSRLAQSFEYNYGDFIPILRPFLR-GYLKICQDVKERRLALFKDYFVD  257 (503)
T ss_pred             HHHHHHHHhCCCcccccch--hHHHHHHHHHHHHHHhcccccchhhhchHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998653211  11111111111111100   001111222221110 111112222222222 2333455


Q ss_pred             HHHHhhhhhhhhhhccchhhHHHHhhccC-----ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 012330          258 KKTDQMHDFQEEYTSMKKEDILSRFLQVT-----DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVK  332 (466)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~d~l~~ll~~~-----~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~  332 (466)
                      ++++........  .....|+++.|+++.     +++++..++..+++||+|||+++++|++++|++||++|+||++||+
T Consensus       258 ~~~~~~~~~~~~--~~~~~d~l~~ll~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~  335 (503)
T PLN02394        258 ERKKLMSAKGMD--KEGLKCAIDHILEAQKKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELD  335 (503)
T ss_pred             HHHHHhhhccCC--cchhhhHHHHHHhccccCCCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            554432111000  012468999999753     7788999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCc-ccccccccCCCCeeecCCCEEEEeecccccCC
Q 012330          333 EATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDA-KMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMK  411 (466)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~-r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~  411 (466)
                      ++.+.++         .++.+++++||||+|||+|++|++|++|... |.+.++.++ +||.||+||.|.++.+++||||
T Consensus       336 ~v~~~~~---------~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i-~g~~IP~Gt~V~~~~~~~~rd~  405 (503)
T PLN02394        336 TVLGPGN---------QVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKL-GGYDIPAESKILVNAWWLANNP  405 (503)
T ss_pred             HHhCCCC---------CCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCccc-CCEEeCCCCEEEEchHHHhCCc
Confidence            9987542         2588999999999999999999999999874 666666655 9999999999999999999999


Q ss_pred             CCccCCCCCcCCCcccCCCCCc-cccCCCccccCCCCcccccccccccccc
Q 012330          412 FIWGDDAEEFKPERWLDENGIF-QKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       412 ~~~g~~p~~F~P~Rfl~~~~~~-~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      ++| +||++|+||||+++++.. .......|+|||+|+|+|+|.. ||...
T Consensus       406 ~~~-~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~-~A~~e  454 (503)
T PLN02394        406 ELW-KNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGII-LALPI  454 (503)
T ss_pred             ccC-CCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHH-HHHHH
Confidence            999 999999999999764321 1123457999999999999876 66554


No 19 
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00  E-value=1.3e-64  Score=479.09  Aligned_cols=411  Identities=19%  Similarity=0.172  Sum_probs=311.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecC
Q 012330            7 PFSFKALAIALAILVVQIVTKTLTQKSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSD   85 (466)
Q Consensus         7 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~   85 (466)
                      .+.++++.+.+..++..+..+++.+++.||||+++|++|+++.+..+   +..++++++++||+ |.++++++++++++|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~ppgp~~~P~~G~~~~~~~~---~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~   81 (463)
T PLN02774          5 VLGVLVIIVCLCSALLRWNEVRYSKKGLPPGTMGWPLFGETTEFLKQ---GPDFMKNQRLRYGSFFKSHILGCPTIVSMD   81 (463)
T ss_pred             ehhHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCchhhHHHHHHh---hHHHHHHHHHHhccCccceecCCCeEEEeC
Confidence            33344444444444444444455556788999999999998877543   66789999999995 888899999999999


Q ss_pred             hhhHHHhhhcCCCCCCCchhhHHHHHhhcc-CceeecCCcchHHHHhhhhhcCCHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 012330           86 PANVEYMLKTNFDNYGKGSYNYSILKDLLG-DGIFTVDGEKWREQRKISSHEFSTKVLRD-FSSAAFRKNAAKLAQLLSE  163 (466)
Q Consensus        86 ~~~i~~il~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~g~~w~~~R~~l~~~~s~~~l~~-~~~~~~~~~~~~l~~~l~~  163 (466)
                      |+++++++.++...|.++. ..... ..+| .+++..+|+.|+++|+.+.+.|+...++. +. ..+.+.++.+++.|. 
T Consensus        82 p~~~~~il~~~~~~~~~~~-~~~~~-~~lg~~~~~~~~g~~w~~~R~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-  157 (463)
T PLN02774         82 PELNRYILMNEGKGLVPGY-PQSML-DILGTCNIAAVHGSTHRYMRGSLLSLISPTMIRDHLL-PKIDEFMRSHLSGWD-  157 (463)
T ss_pred             HHHHHHHHcCCCCeEEecC-CHHHH-HHhCccchhhcCCHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHHhhC-
Confidence            9999999987655554432 12222 3445 46777899999999999999999988876 45 466666666666553 


Q ss_pred             HhcCCCceehHHhHHHHHHHHHHHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhhhhhHHHHHHhccCchHHHHH
Q 012330          164 AANSDKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYVDIFWKIKKLLNIGSEARLKQ  243 (466)
Q Consensus       164 ~~~~~~~vdl~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  243 (466)
                         .++++|+.+.+..+++++++.++||.+....      ...+...+......    .    ..+..+++....++..+
T Consensus       158 ---~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~~~~~----~----~~~~~~lp~~~~~~~~~  220 (463)
T PLN02774        158 ---GLKTIDIQEKTKEMALLSALKQIAGTLSKPI------SEEFKTEFFKLVLG----T----LSLPIDLPGTNYRSGVQ  220 (463)
T ss_pred             ---CCCCEEeeHHHHHHHHHHHHHHHcCCCChHH------HHHHHHHHHHHhcc----c----ccCCcCCCChhhhHHHH
Confidence               2357999999999999999999999754211      01222222221110    0    00111222223456667


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHhhccC------ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 012330          244 RIEVIDTFVYKIIRKKTDQMHDFQEEYTSMKKEDILSRFLQVT------DPKYLRDIILNFVIAGKDTTAATLSWFIYML  317 (466)
Q Consensus       244 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l  317 (466)
                      +.+.+.+++.+.++++.+..         ....|+++.+++..      +++++.+++..+++||+|||+++++|++++|
T Consensus       221 ~~~~~~~~~~~~i~~r~~~~---------~~~~d~l~~ll~~~~~~~~~s~~ei~~~~~~ll~Ag~dTt~~~l~w~l~~L  291 (463)
T PLN02774        221 ARKNIVRMLRQLIQERRASG---------ETHTDMLGYLMRKEGNRYKLTDEEIIDQIITILYSGYETVSTTSMMAVKYL  291 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhcC---------CCcccHHHHHHhCccCCCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            78888899998888876432         12468999998642      7889999999999999999999999999999


Q ss_pred             hcChHHHHHHHHHHHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCC
Q 012330          318 CKHPAVQEKIVQEVKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKG  397 (466)
Q Consensus       318 ~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G  397 (466)
                      +.||++|+|+++|++++.+.....      ..++++++++||||+|||+|++|++|+++...|++.+|.++ +||.||||
T Consensus       292 ~~~P~~q~kl~~Ei~~~~~~~~~~------~~~~~~~l~~lpyl~a~ikE~lRl~P~v~~~~R~~~~d~~l-~g~~IpkG  364 (463)
T PLN02774        292 HDHPKALQELRKEHLAIRERKRPE------DPIDWNDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDMEL-NGYVIPKG  364 (463)
T ss_pred             HcCHHHHHHHHHHHHHHHhccCCC------CCCCHHHHhcCcHHHHHHHHHHhcCCCCCCcccccCCCeeE-CCEEECCC
Confidence            999999999999999998643111      23689999999999999999999999999888888888777 99999999


Q ss_pred             CEEEEeecccccCCCCccCCCCCcCCCcccCCCCCccccCCCccccCCCCcccccccccccccccc
Q 012330          398 DMVCYQAYAMGRMKFIWGDDAEEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKCFWS  463 (466)
Q Consensus       398 ~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~~~~  463 (466)
                      +.|+++.+++|+||++| +||++|+||||++++..    ....++|||+|+|.|||.. ||....+
T Consensus       365 t~v~~~~~~~~rdp~~~-~dP~~F~PeRfl~~~~~----~~~~~lpFG~G~r~C~G~~-~A~~e~~  424 (463)
T PLN02774        365 WRIYVYTREINYDPFLY-PDPMTFNPWRWLDKSLE----SHNYFFLFGGGTRLCPGKE-LGIVEIS  424 (463)
T ss_pred             CEEEEehHHhcCCcccC-CChhccCchhcCCCCcC----CCccccCcCCCCCcCCcHH-HHHHHHH
Confidence            99999999999999999 99999999999975321    1235999999999999776 7765533


No 20 
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00  E-value=2.6e-63  Score=471.45  Aligned_cols=397  Identities=41%  Similarity=0.676  Sum_probs=315.7

Q ss_pred             CCCcchhhhhhcchhhHHHHHHHHHhhcC--ceEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHHHHHhhccCce
Q 012330           41 HPIGGTVFNQLLNFNRLHHYMTDLAAKHG--TYRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYSILKDLLGDGI  118 (466)
Q Consensus        41 ~p~~G~~~~~~~~~~~~~~~~~~~~~~yg--~~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~l  118 (466)
                      .++.|++...+.+   ..+++..+.++++  .+.+...+.  ++++||+++++|+..+...|.+...+...+....|+|+
T Consensus        49 ~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g~gi  123 (502)
T PLN02426         49 AYLTASWAKDFDN---LCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLLGRGI  123 (502)
T ss_pred             CCccHHHHHhccc---HHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcCCce
Confidence            5588887665444   6777777777776  344444443  89999999999998876788887655555667778999


Q ss_pred             eecCCcchHHHHhhhhhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHhc--CCCceehHHhHHHHHHHHHHHHHhcCCCc
Q 012330          119 FTVDGEKWREQRKISSHEFSTKVLRDFS-SAAFRKNAAKLAQLLSEAAN--SDKILDIQDLFMKSTLDSIFKVAFGVELD  195 (466)
Q Consensus       119 ~~~~g~~w~~~R~~l~~~~s~~~l~~~~-~~~~~~~~~~l~~~l~~~~~--~~~~vdl~~~~~~~~~~~i~~~~fG~~~~  195 (466)
                      +..+|+.|+++||.+++.|+.++++.+. ..++++..+.+++.+.+.++  .+.++|+.+++..+++|+++.++||.+++
T Consensus       124 ~~~~g~~wk~~Rk~l~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~  203 (502)
T PLN02426        124 FNVDGDSWRFQRKMASLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLDPG  203 (502)
T ss_pred             eecCcHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999998875 24677778888888876542  24689999999999999999999999887


Q ss_pred             ccCCCCCCcchhHHHHHHHHHHhHhhhh---hhhHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 012330          196 SVCGSNEEGTRFSSAFDDASAMTLWRYV---DIFWKIKKLLNIGSEARLKQRIEVIDTFVYKIIRKKTDQMHDFQEEYTS  272 (466)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  272 (466)
                      ..+... ...++.+++............   ..++.+.++++.+..++..++.+.+.+++.+.|+++++...        
T Consensus       204 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~--------  274 (502)
T PLN02426        204 CLELSL-PISEFADAFDTASKLSAERAMAASPLLWKIKRLLNIGSERKLKEAIKLVDELAAEVIRQRRKLGF--------  274 (502)
T ss_pred             ccCCCC-CccHHHHHHHHHHHHHHHHHhcchhHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence            654211 224566665554332222222   12233444444455677788888999999999998876421        


Q ss_pred             cchhhHHHHhhccC-ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCCCcchhhhhcCCCC
Q 012330          273 MKKEDILSRFLQVT-DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATGAKDISDFLKVAGCIS  351 (466)
Q Consensus       273 ~~~~d~l~~ll~~~-~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~~  351 (466)
                      ....|+++.+++.. +++++.+++..+++||+|||+++++|++++|++||++|+||++|++.+.+...        ..++
T Consensus       275 ~~~~dll~~ll~~~~~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~--------~~~t  346 (502)
T PLN02426        275 SASKDLLSRFMASINDDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPNQ--------EAAS  346 (502)
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC--------CCCC
Confidence            12569999999876 78899999999999999999999999999999999999999999999986532        1269


Q ss_pred             HHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCCCEEEEeecccccCCCCccCCCCCcCCCcccCCCC
Q 012330          352 EEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKFIWGDDAEEFKPERWLDENG  431 (466)
Q Consensus       352 ~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~  431 (466)
                      .+++++||||+|||+|+||++|++|...|++.+++++++|+.||+||.|.++.+++||||++||+||++|+||||++++ 
T Consensus       347 ~~~l~~LpYl~avi~EtLRl~p~v~~~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~-  425 (502)
T PLN02426        347 FEEMKEMHYLHAALYESMRLFPPVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNG-  425 (502)
T ss_pred             HHHHhcChHHHHHHHHHHhCCCCCCCcceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCC-
Confidence            9999999999999999999999999999999999998899999999999999999999999999999999999999742 


Q ss_pred             CccccCCCccccCCCCcccccccccccccc
Q 012330          432 IFQKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       432 ~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      ......+..++|||+|+|.|+|.+ ||..+
T Consensus       426 ~~~~~~~~~~~pFg~G~R~CiG~~-~A~~e  454 (502)
T PLN02426        426 VFVPENPFKYPVFQAGLRVCLGKE-MALME  454 (502)
T ss_pred             CcCCCCCcccCCCCCCCCCCccHH-HHHHH
Confidence            111223557999999999999876 66544


No 21 
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00  E-value=2.3e-63  Score=479.04  Aligned_cols=414  Identities=26%  Similarity=0.383  Sum_probs=313.0

Q ss_pred             HhhhcccCCCCCCCCCCcchhhhhhc---------------chhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHH
Q 012330           27 KTLTQKSGNKQKKYHPIGGTVFNQLL---------------NFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVE   90 (466)
Q Consensus        27 ~~~~~~~~~pgp~~~p~~G~~~~~~~---------------~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~   90 (466)
                      ++..++..+|||+...+.+. +.+..               ..++++..+.+++++||+ |+++++..++++++||+.++
T Consensus       109 ~~~~~~~~~pgp~laa~t~~-ye~y~~~~~~~~~~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~  187 (633)
T PLN02738        109 RNGLAKLGPPGELLAFLFTW-VEAGEGYPKIPEAKGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAK  187 (633)
T ss_pred             HhhhhhCCCCCchHHHHHcc-cccccccccCccccCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHH
Confidence            45556679999986544432 22211               235678999999999996 67777888899999999999


Q ss_pred             HhhhcCCCCCCCchhhHHHHHhhccCceeecCCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 012330           91 YMLKTNFDNYGKGSYNYSILKDLLGDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKI  170 (466)
Q Consensus        91 ~il~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~  170 (466)
                      +|+..+...|.++... .......+.+++..+|+.|+.+|+.+.+.|+.+.+..+.+ .+.+.++.+++.+.+....+++
T Consensus       188 eIl~~~~~~f~k~~~~-~~~~~~~g~~l~~~dge~wr~rRr~l~p~Fs~~~v~~l~~-~i~~~v~~L~~~L~~~~~~g~~  265 (633)
T PLN02738        188 HILRDNSKAYSKGILA-EILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVAAMIS-LFGQASDRLCQKLDAAASDGED  265 (633)
T ss_pred             HHHhhCcccCCCcchH-HHHhhccCCceecCCcHHHHHHHHhccHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCc
Confidence            9998775667776433 2344445678888999999999999999999999999885 8889999999999876566789


Q ss_pred             eehHHhHHHHHHHHHHHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhhhhhH-H---HHHHhccCchHHHHHHHH
Q 012330          171 LDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYVDIFW-K---IKKLLNIGSEARLKQRIE  246 (466)
Q Consensus       171 vdl~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---l~~~~~~~~~~~~~~~~~  246 (466)
                      +|+.+.+..+++|+++.++||.+++...+.    ..+...+..............++ +   +...++ ...++..+..+
T Consensus       266 vdl~~~~~~lt~DVI~~~~FG~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~-~~~~~~~~~~~  340 (633)
T PLN02738        266 VEMESLFSRLTLDIIGKAVFNYDFDSLSND----TGIVEAVYTVLREAEDRSVSPIPVWEIPIWKDIS-PRQRKVAEALK  340 (633)
T ss_pred             EeHHHHHHHHHHHHHHHHHhCCCccccccc----hHHHHHHHHHHHHHHHHhhcchhhhhhhHHhhhc-hHHHHHHHHHH
Confidence            999999999999999999999998754322    23444444333222111111111 1   111111 11234445555


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhh----hhhccchhhHHHHhhccC---ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 012330          247 VIDTFVYKIIRKKTDQMHDFQE----EYTSMKKEDILSRFLQVT---DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCK  319 (466)
Q Consensus       247 ~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~d~l~~ll~~~---~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~  319 (466)
                      .+..++.++++...+..+....    ........|+++.|++..   +++++.+++..+++||+|||+++++|++++|++
T Consensus       341 ~l~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~dil~~Ll~~~~~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~  420 (633)
T PLN02738        341 LINDTLDDLIAICKRMVEEEELQFHEEYMNERDPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSK  420 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccchhcccccccchHHHHHHHcCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            5666666666554432211110    001123468999999765   789999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCCCE
Q 012330          320 HPAVQEKIVQEVKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDM  399 (466)
Q Consensus       320 ~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~  399 (466)
                      ||++|+||++|++++++..          .++++++++||||+|||+|+|||+|+++...|++.++.++ +||.|||||.
T Consensus       421 ~Pevq~kLreEl~~v~~~~----------~~t~edL~kLPYL~AVIkEtLRL~p~~p~~~R~a~~d~~i-~gy~IPkGT~  489 (633)
T PLN02738        421 EPSVVAKLQEEVDSVLGDR----------FPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLENDML-GGYPIKRGED  489 (633)
T ss_pred             CHHHHHHHHHHHHHhcCCC----------CCCHHHHccCHHHHHHHHHHHhcCCCccccceeeccCceE-CCEEECCCCE
Confidence            9999999999999998742          2589999999999999999999999999999999888776 9999999999


Q ss_pred             EEEeecccccCCCCccCCCCCcCCCcccCCCCC-ccccCCCccccCCCCcccccccccccccc
Q 012330          400 VCYQAYAMGRMKFIWGDDAEEFKPERWLDENGI-FQKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       400 v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~-~~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      |.++.+.+||||++| +||++|+||||+.++.. ........|+|||.|+|.|+|++ ||..+
T Consensus       490 V~~s~~~ihrdp~if-pdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~-lA~~E  550 (633)
T PLN02738        490 IFISVWNLHRSPKHW-DDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDM-FASFE  550 (633)
T ss_pred             EEecHHHHhCCcccc-CCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHH-HHHHH
Confidence            999999999999999 99999999999853221 11224567999999999999887 66544


No 22 
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00  E-value=3e-63  Score=469.38  Aligned_cols=413  Identities=18%  Similarity=0.208  Sum_probs=315.9

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhh--hcccCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcC-ceEEecCC
Q 012330            1 MDFLSIPFSFKALAIALAILVVQIVTKTL--TQKSGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHG-TYRLLGPF   77 (466)
Q Consensus         1 m~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg-~~~~~~~~   77 (466)
                      |++++....+...++++.++.++..++..  .+.+.||||+++|++|+.+.+.  .++++.++.+++++|| +|.+++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ppgp~~~P~iG~~~~~~--~~~~~~~~~~~~~~yG~i~~~~~~~   78 (463)
T PLN02196          1 MDFSALFLTLFAGALFLCLLRFLAGFRRSSSTKLPLPPGTMGWPYVGETFQLY--SQDPNVFFASKQKRYGSVFKTHVLG   78 (463)
T ss_pred             CchHhhhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccchHHHHH--hcCHHHHHHHHHHHhhhhheeeecC
Confidence            55544444444444444444444444322  2336888999999999987653  2358889999999999 48888899


Q ss_pred             cceEEecChhhHHHhhhcCCCCCCCchhhHHHHHhhcc-CceeecCCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Q 012330           78 RSEVYSSDPANVEYMLKTNFDNYGKGSYNYSILKDLLG-DGIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAK  156 (466)
Q Consensus        78 ~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~  156 (466)
                      +++|+++||+++++++.++...|...  .........| .+++..+|+.|+++|+++.+.|+.++++.+.+ .+.+.+++
T Consensus        79 ~~~v~v~~p~~~~~vl~~~~~~~~~~--~~~~~~~~~g~~~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~-~i~~~~~~  155 (463)
T PLN02196         79 CPCVMISSPEAAKFVLVTKSHLFKPT--FPASKERMLGKQAIFFHQGDYHAKLRKLVLRAFMPDAIRNMVP-DIESIAQE  155 (463)
T ss_pred             CceEEEcCHHHHHHHHhCCCCccccc--CchHHHHHcCcccccccCcHHHHHHHHHHHHhcChHHHHHHHH-HHHHHHHH
Confidence            99999999999999998765555322  2222334455 47888999999999999999999999999885 67777777


Q ss_pred             HHHHHHHHhcCCCceehHHhHHHHHHHHHHHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhhhhhHHHHHHhccC
Q 012330          157 LAQLLSEAANSDKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYVDIFWKIKKLLNIG  236 (466)
Q Consensus       157 l~~~l~~~~~~~~~vdl~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  236 (466)
                      +++.|.     +..+|+.+++..+++++++.++||.+....      ...+...+... .    ..+..++   ..++..
T Consensus       156 ~~~~~~-----~~~v~~~~~~~~~~~~v~~~~~fG~~~~~~------~~~~~~~~~~~-~----~~~~~~~---~~~p~~  216 (463)
T PLN02196        156 SLNSWE-----GTQINTYQEMKTYTFNVALLSIFGKDEVLY------REDLKRCYYIL-E----KGYNSMP---INLPGT  216 (463)
T ss_pred             HHHcCC-----CCeEEeHHHHHHHHHHHHHHHHcCCCCchH------HHHHHHHHHHH-h----cchhccc---ccCCCc
Confidence            776653     347999999999999999999999864210      01111111111 0    0111111   122222


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHhhccC---ChhHHHHHHHHHHHhhhhhHHHHHHHH
Q 012330          237 SEARLKQRIEVIDTFVYKIIRKKTDQMHDFQEEYTSMKKEDILSRFLQVT---DPKYLRDIILNFVIAGKDTTAATLSWF  313 (466)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~---~~~~i~~~~~~~~~ag~~tt~~~l~~~  313 (466)
                      ..++..++.+.+.+++.+.++++.+...         ...|+++.+++..   +++++.++++.+++||+|||+++++|+
T Consensus       217 ~~~~~~~a~~~~~~~~~~~i~~~~~~~~---------~~~d~l~~ll~~~~~l~~~ei~~~~~~~~~Ag~dTta~~l~~~  287 (463)
T PLN02196        217 LFHKSMKARKELAQILAKILSKRRQNGS---------SHNDLLGSFMGDKEGLTDEQIADNIIGVIFAARDTTASVLTWI  287 (463)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhcCC---------CcccHHHHHHhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3456777888888888888887765321         2468999988643   889999999999999999999999999


Q ss_pred             HHHHhcChHHHHHHHHHHHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCee
Q 012330          314 IYMLCKHPAVQEKIVQEVKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFS  393 (466)
Q Consensus       314 l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~  393 (466)
                      +++|++||++|+++++|++.+.+..+.+      ..++.++++++|||+|||+|++|++|+++...|.+.+|.++ +||.
T Consensus       288 l~~L~~~P~vq~kl~~Ei~~~~~~~~~~------~~~~~~~~~~l~yl~avi~EtlRl~p~~~~~~R~~~~d~~i-~g~~  360 (463)
T PLN02196        288 LKYLAENPSVLEAVTEEQMAIRKDKEEG------ESLTWEDTKKMPLTSRVIQETLRVASILSFTFREAVEDVEY-EGYL  360 (463)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHhcccccC------CCCCHHHHhcChHHHHHHHHHHhcCCCccccceeecccccc-CCEE
Confidence            9999999999999999999998643211      23689999999999999999999999999999998888776 9999


Q ss_pred             ecCCCEEEEeecccccCCCCccCCCCCcCCCcccCCCCCccccCCCccccCCCCcccccccccccccc
Q 012330          394 VRKGDMVCYQAYAMGRMKFIWGDDAEEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       394 ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      ||||+.|+++.+++|+||++| +||++|+||||++..      .+..++|||+|+|.|+|.+ +|...
T Consensus       361 IpkGt~v~~~~~~~~rd~~~~-~dP~~F~PeRfl~~~------~~~~~lpFG~G~r~C~G~~-~A~~e  420 (463)
T PLN02196        361 IPKGWKVLPLFRNIHHSADIF-SDPGKFDPSRFEVAP------KPNTFMPFGNGTHSCPGNE-LAKLE  420 (463)
T ss_pred             eCCCCEEEeeHHHhcCCchhc-CCcCccChhhhcCCC------CCCcccCcCCCCCCCchHH-HHHHH
Confidence            999999999999999999999 999999999999632      3467999999999999876 66544


No 23 
>PF00067 p450:  Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature;  InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00  E-value=1.3e-63  Score=478.64  Aligned_cols=402  Identities=29%  Similarity=0.444  Sum_probs=325.4

Q ss_pred             CCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhH---HHH
Q 012330           35 NKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNY---SIL  110 (466)
Q Consensus        35 ~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~---~~~  110 (466)
                      ||||+++|++|+.+.+.+ .+++++++.+++++||+ |.++.+++++++|+||+.+++|+..+...+..+....   ...
T Consensus         1 Ppgp~~~p~~G~~~~~~~-~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~   79 (463)
T PF00067_consen    1 PPGPPPLPILGNLLQFRR-KGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFR   79 (463)
T ss_dssp             SSCSSSBTTTBTHHHHHT-THHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHH
T ss_pred             CcCCCCcCceeEHHHhcC-CCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhcccccccccccccccccccccccc
Confidence            899999999999998875 56789999999999996 8889999999999999999999998755666543222   222


Q ss_pred             HhhccCceeecCCcchHHHHhhhhhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHHHHHH
Q 012330          111 KDLLGDGIFTVDGEKWREQRKISSHEFSTK-VLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSIFKVA  189 (466)
Q Consensus       111 ~~~~~~~l~~~~g~~w~~~R~~l~~~~s~~-~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i~~~~  189 (466)
                      ....+.+++..+|+.|+.+|+.+.+.|+.. .+ .+. ..+++.++.+++.+.+....+..+|+.++++.+++++++.++
T Consensus        80 ~~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~-~~~-~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~  157 (463)
T PF00067_consen   80 GPFGGKGLFFSDGERWRRQRRLLAPAFSSKKIL-KLE-PLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVL  157 (463)
T ss_dssp             HHHTTTSSTTSSHHHHHHHHHHHHHHHSHHHHH-HHH-HHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccc-ccc-cccccccccccccccccccccceeeeeccccccccccccccc
Confidence            356678899999999999999999999998 55 666 588999999999999876555689999999999999999999


Q ss_pred             hcCCCcccCCCCCCcchhHHHHHHHHHHhHh---hhhhhhHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012330          190 FGVELDSVCGSNEEGTRFSSAFDDASAMTLW---RYVDIFWKIKKLLNIGSEARLKQRIEVIDTFVYKIIRKKTDQMHDF  266 (466)
Q Consensus       190 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  266 (466)
                      ||.+++..++.  ....+.+.+.........   .....++ +.++++....+...++.+.+.+++.+.++++.+.....
T Consensus       158 fG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  234 (463)
T PF00067_consen  158 FGKDFGSLDDE--DFEEFLEAFDELFELLSNFFWNLPFFFP-WLKYLPTPLFRRFKRARDRLRKYIKEIIEERREELDDG  234 (463)
T ss_dssp             HSSHHHGTTHH--HHHHHHHHHHHHHHHHHSHHHHHHHHHH-HHCTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHSS
T ss_pred             ccceeeecccc--cccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            99987743311  112344445444432211   1222222 33344445567777788889999999999988877664


Q ss_pred             hhhhhccchhhHHHHhhcc--------C-ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCC
Q 012330          267 QEEYTSMKKEDILSRFLQV--------T-DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATGA  337 (466)
Q Consensus       267 ~~~~~~~~~~d~l~~ll~~--------~-~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~  337 (466)
                      .     ....|+++.+++.        . +++++.+++..+++||+|||+.+++|++++|++||++|++|++||+++.+.
T Consensus       235 ~-----~~~~d~l~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~  309 (463)
T PF00067_consen  235 D-----ESRRDLLDSLLQASSDSDGPSGLSDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGD  309 (463)
T ss_dssp             S-----SSCSSHHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTT
T ss_pred             c-----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1     2367888888875        1 789999999999999999999999999999999999999999999999955


Q ss_pred             CCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCC-CCcccccccccCCCCeeecCCCEEEEeecccccCCCCccC
Q 012330          338 KDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVP-VDAKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKFIWGD  416 (466)
Q Consensus       338 ~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~-~~~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~~~g~  416 (466)
                      ..         .++.+++++||||+|||+|+||++|+++ .+.|++.+|.++ +||.|||||.|.++.+++|+||++| +
T Consensus       310 ~~---------~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l-~g~~ip~gt~v~~~~~~~~~d~~~~-~  378 (463)
T PF00067_consen  310 GR---------EITFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTL-GGYFIPKGTIVIVSIYALHRDPEYF-P  378 (463)
T ss_dssp             SS---------SHHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEE-TTEEEETTSEEEEEHHHHTTSTTTS-S
T ss_pred             cc---------ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc-c
Confidence            43         2588999999999999999999999999 667999998888 8899999999999999999999999 9


Q ss_pred             CCCCcCCCcccCCCCCccccCCCccccCCCCccccccccccccc
Q 012330          417 DAEEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKC  460 (466)
Q Consensus       417 ~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~  460 (466)
                      ||++|+||||++++. .....+..|+|||.|+|.|||.+ ||.-
T Consensus       379 dp~~F~P~R~~~~~~-~~~~~~~~~~~Fg~G~r~C~G~~-~A~~  420 (463)
T PF00067_consen  379 DPDEFDPERFLDERG-ISNRPSFAFLPFGAGPRMCPGRN-LAMM  420 (463)
T ss_dssp             STTS--TTGGBTTTS-TBCSSSTTSSTTESSTTS-TTHH-HHHH
T ss_pred             ccccccccccccccc-ccccccccccccccccccchHHH-HHHH
Confidence            999999999999865 11235778999999999999877 5543


No 24 
>PLN03018 homomethionine N-hydroxylase
Probab=100.00  E-value=1.8e-61  Score=461.30  Aligned_cols=412  Identities=18%  Similarity=0.257  Sum_probs=298.9

Q ss_pred             cCCCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhc-C-ceEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHHHH
Q 012330           33 SGNKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKH-G-TYRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYSIL  110 (466)
Q Consensus        33 ~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~y-g-~~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~  110 (466)
                      +.||||+++|++|+++.+..... ...++.+..++| | +|.++++++++|+|+||+.+++++.++...|.+++... ..
T Consensus        40 ~~PPgp~~~P~iGnl~~l~~~~~-~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~-~~  117 (534)
T PLN03018         40 QLPPGPPGWPILGNLPELIMTRP-RSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLS-IM  117 (534)
T ss_pred             CCCcCCCCCCeeccHHHhccCCC-cchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCch-hh
Confidence            37999999999999887643211 113455555555 5 58889999999999999999999998767788876443 22


Q ss_pred             Hhhcc--Cceeec-CCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHHHH
Q 012330          111 KDLLG--DGIFTV-DGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSIFK  187 (466)
Q Consensus       111 ~~~~~--~~l~~~-~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i~~  187 (466)
                      ..+..  .++++. +|+.|+++|+++++.|.......+...+.+.+++.+++.+.+..+.+.++|+.+.+..+++++++.
T Consensus       118 ~~l~~~~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~  197 (534)
T PLN03018        118 ETIGDNYKSMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVTMR  197 (534)
T ss_pred             hhhccCCCceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHHHH
Confidence            22211  246555 599999999999998766555555545666678889888876444556799999999999999999


Q ss_pred             HHhcCCCcccCCCCCCcchhHHHHHHHHH----HhHh----hhhhhhHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHH
Q 012330          188 VAFGVELDSVCGSNEEGTRFSSAFDDASA----MTLW----RYVDIFWKIKKLLNI-GSEARLKQRIEVIDTFVYKIIRK  258 (466)
Q Consensus       188 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~  258 (466)
                      ++||.++...+........+...+.....    ....    .....++.+.+.... ....+.......+.+++.+++++
T Consensus       198 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  277 (534)
T PLN03018        198 MLFGRRHVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVDYVERWLRGWNIDGQEERAKVNVNLVRSYNNPIIDE  277 (534)
T ss_pred             HHhCCccccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999886432211001111121211111    1110    011112211111111 12234445566678888888888


Q ss_pred             HHHhhhhhhhhhhccchhhHHHHhhcc--------CChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHH
Q 012330          259 KTDQMHDFQEEYTSMKKEDILSRFLQV--------TDPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQE  330 (466)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~d~l~~ll~~--------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~E  330 (466)
                      +++......   ......|+++.|++.        .+++++++++..+++||+|||+++++|++++|+.||++|+++++|
T Consensus       278 ~~~~~~~~~---~~~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~~E  354 (534)
T PLN03018        278 RVELWREKG---GKAAVEDWLDTFITLKDQNGKYLVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKE  354 (534)
T ss_pred             HHHHhhhcc---CCCCcccHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            775432111   001246899999853        278899999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCc-ccccccccCCCCeeecCCCEEEEeeccccc
Q 012330          331 VKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDA-KMCFSDDTLPDGFSVRKGDMVCYQAYAMGR  409 (466)
Q Consensus       331 i~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~-r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~  409 (466)
                      |+.+.+..+         .++.+++.+||||+|||+|++|++|++|... |.+.+|.++ +||.||||+.|.++.+++|+
T Consensus       355 i~~v~~~~~---------~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i-~G~~IpkGt~V~~~~~~~~~  424 (534)
T PLN03018        355 LDEVVGKDR---------LVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTL-GGYFIPKGSHIHVCRPGLGR  424 (534)
T ss_pred             HHHHhCCCC---------CCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeE-CCEEECCCCEEEEChHHhcC
Confidence            999987542         3589999999999999999999999999874 667777666 99999999999999999999


Q ss_pred             CCCCccCCCCCcCCCcccCCCCCcc----ccCCCccccCCCCcccccccccccccc
Q 012330          410 MKFIWGDDAEEFKPERWLDENGIFQ----KESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       410 d~~~~g~~p~~F~P~Rfl~~~~~~~----~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      ||++| +||++|+||||+++++...    ...+..|+|||+|+|.|+|.. ||...
T Consensus       425 dp~~~-~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~-lA~~e  478 (534)
T PLN03018        425 NPKIW-KDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVK-VGTIM  478 (534)
T ss_pred             CcccC-CCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHH-HHHHH
Confidence            99999 9999999999997543211    123567999999999999876 65543


No 25 
>PLN02655 ent-kaurene oxidase
Probab=100.00  E-value=6.4e-62  Score=461.18  Aligned_cols=401  Identities=20%  Similarity=0.269  Sum_probs=302.8

Q ss_pred             CCCCCCCCCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHHHHHhh
Q 012330           35 NKQKKYHPIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYSILKDL  113 (466)
Q Consensus        35 ~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~~  113 (466)
                      ||||+++|++|+++.+..  .+++.++.+++++||+ |.++++++++++|+||+++++++.++...|..++... ....+
T Consensus         1 ppgp~~lP~iG~l~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~-~~~~~   77 (466)
T PLN02655          1 VPAVPGLPVIGNLLQLKE--KKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSK-ALTVL   77 (466)
T ss_pred             CcCCCCCCccccHHHcCC--CchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhh-HHHHH
Confidence            789999999999887743  3478999999999995 7888999999999999999999998777888776443 33334


Q ss_pred             ccCc--eeec-CCcchHHHHhhhh-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCceehHHhHHHHHHHHHHH
Q 012330          114 LGDG--IFTV-DGEKWREQRKISS-HEFSTKVLRDFSSAAFRKNAAKLAQLLSEAAN--SDKILDIQDLFMKSTLDSIFK  187 (466)
Q Consensus       114 ~~~~--l~~~-~g~~w~~~R~~l~-~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~--~~~~vdl~~~~~~~~~~~i~~  187 (466)
                      .+++  ++.. +|+.|+++|+.+. +.|+...++.+.+ .+++.++.+.+.+.+...  .++++|+.+.+..+++++++.
T Consensus        78 ~~~~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~  156 (466)
T PLN02655         78 TRDKSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRD-TRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLI  156 (466)
T ss_pred             hcCCCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHH-HHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHH
Confidence            4432  4444 4899999998665 4577666766663 667777777777765432  457899999999999999999


Q ss_pred             HHhcCCCcccCCCCC--Cc---chhHHHHHHHHHHhHhh-hhhhhHHHHHHhccCch-HHHHHHHHHHHHHHHHHHHHHH
Q 012330          188 VAFGVELDSVCGSNE--EG---TRFSSAFDDASAMTLWR-YVDIFWKIKKLLNIGSE-ARLKQRIEVIDTFVYKIIRKKT  260 (466)
Q Consensus       188 ~~fG~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~  260 (466)
                      ++||.+++.......  ..   ..+...+.......... ....+| +.++++...+ +...+....+.+++..++++++
T Consensus       157 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  235 (466)
T PLN02655        157 QALGEDVESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDWRDFFP-YLSWIPNKSFETRVQTTEFRRTAVMKALIKQQK  235 (466)
T ss_pred             HHhccccccccccccccchhhHHHHHHHHHHHHHHhCCcchhhhhh-hhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998765431110  00   11122222222221111 112223 2333332222 2333334445677777777777


Q ss_pred             HhhhhhhhhhhccchhhHHHHhhccC---ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCC
Q 012330          261 DQMHDFQEEYTSMKKEDILSRFLQVT---DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATGA  337 (466)
Q Consensus       261 ~~~~~~~~~~~~~~~~d~l~~ll~~~---~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~  337 (466)
                      ++.....      +..|+++.+++..   +++++.+++..+++||+|||+++++|++++|++||++|+++++||+.+.+.
T Consensus       236 ~~~~~~~------~~~d~l~~ll~~~~~ls~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~  309 (466)
T PLN02655        236 KRIARGE------ERDCYLDFLLSEATHLTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGD  309 (466)
T ss_pred             HhhcCCC------CcccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCC
Confidence            5533221      2458999999765   899999999999999999999999999999999999999999999999875


Q ss_pred             CCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCC-cccccccccCCCCeeecCCCEEEEeecccccCCCCccC
Q 012330          338 KDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVD-AKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKFIWGD  416 (466)
Q Consensus       338 ~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~-~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~~~g~  416 (466)
                      ..          ++.+++++||||+|||+|+||++|+++.. .|.+.+|.++ +||.|||||.|.++.+++||||++| +
T Consensus       310 ~~----------~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~-~g~~ip~gt~v~~~~~~~~~d~~~~-~  377 (466)
T PLN02655        310 ER----------VTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTL-GGYDIPAGTQIAINIYGCNMDKKRW-E  377 (466)
T ss_pred             CC----------CCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCccc-CCEEECCCCEEEecHHHhcCCcccC-C
Confidence            42          59999999999999999999999999987 5888888666 9999999999999999999999999 9


Q ss_pred             CCCCcCCCcccCCCCCccccCCCccccCCCCcccccccccccccc
Q 012330          417 DAEEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       417 ~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      ||++|+||||+++++..  .....++|||+|+|.|||.. ||...
T Consensus       378 ~p~~F~PeR~~~~~~~~--~~~~~~~~Fg~G~r~C~G~~-~A~~~  419 (466)
T PLN02655        378 NPEEWDPERFLGEKYES--ADMYKTMAFGAGKRVCAGSL-QAMLI  419 (466)
T ss_pred             ChhccCccccCCCCccc--CCcccccCCCCCCCCCCcHH-HHHHH
Confidence            99999999999764321  12457999999999999875 76554


No 26 
>PLN02936 epsilon-ring hydroxylase
Probab=100.00  E-value=1.5e-61  Score=460.53  Aligned_cols=412  Identities=24%  Similarity=0.359  Sum_probs=324.5

Q ss_pred             cCCCCCCCCCCcchhhhhhcch--hhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHHH
Q 012330           33 SGNKQKKYHPIGGTVFNQLLNF--NRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYSI  109 (466)
Q Consensus        33 ~~~pgp~~~p~~G~~~~~~~~~--~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~  109 (466)
                      +.-.|..+||++|..+.+..+.  +.++..+.+++++||+ |.++.++.++++++||+++++|+.+....|.++... ..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~-~~   90 (489)
T PLN02936         12 RLWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVA-EV   90 (489)
T ss_pred             ccCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchh-hh
Confidence            4557889999999999988875  6789999999999996 778888999999999999999998766778776533 23


Q ss_pred             HHhhccCceeecCCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHHHHHH
Q 012330          110 LKDLLGDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSIFKVA  189 (466)
Q Consensus       110 ~~~~~~~~l~~~~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i~~~~  189 (466)
                      ....++.+++..+|+.|+++|+++.+.|+..++..+.+.++.+.++.+++.+.+....+.++|+.+.+..+++++++.++
T Consensus        91 ~~~~~~~~i~~~~g~~wk~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi~~~~  170 (489)
T PLN02936         91 SEFLFGSGFAIAEGELWTARRRAVVPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVIGLSV  170 (489)
T ss_pred             hHHHhcCccccCCchHHHHHHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHH
Confidence            33446788888999999999999999999988888775577888999999998765566789999999999999999999


Q ss_pred             hcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhhhhhHHHH-HHh--ccCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012330          190 FGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYVDIFWKIK-KLL--NIGSEARLKQRIEVIDTFVYKIIRKKTDQMHDF  266 (466)
Q Consensus       190 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  266 (466)
                      ||.+++..+..    .++.+++..............++.+. .++  ..+..++..++.+.+.+++.+.++++++..+..
T Consensus       171 fG~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~  246 (489)
T PLN02936        171 FNYNFDSLTTD----SPVIQAVYTALKEAETRSTDLLPYWKVDFLCKISPRQIKAEKAVTVIRETVEDLVDKCKEIVEAE  246 (489)
T ss_pred             cCCCccccccC----cHHHHHHHHHHHHHHHhhhccchHHhhHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99998764321    23444444433222111111222111 111  012345667778888888888888777543321


Q ss_pred             hhhh-----hccchhhHHHHhhccC---ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCC
Q 012330          267 QEEY-----TSMKKEDILSRFLQVT---DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATGAK  338 (466)
Q Consensus       267 ~~~~-----~~~~~~d~l~~ll~~~---~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~  338 (466)
                      .+..     ......++++.|++..   +++++.+++..+++||+|||+++++|++++|++||++|+++++|++.+++..
T Consensus       247 ~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~  326 (489)
T PLN02936        247 GEVIEGEEYVNDSDPSVLRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQGR  326 (489)
T ss_pred             ccccccccccccCchHHHHHHHhccccCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCC
Confidence            1100     0113478999998763   8899999999999999999999999999999999999999999999998743


Q ss_pred             CcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCCCEEEEeecccccCCCCccCCC
Q 012330          339 DISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKFIWGDDA  418 (466)
Q Consensus       339 ~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~~~g~~p  418 (466)
                      .          ++++++++||||+|||+|+||++|+++...|++..++++++||.||+|+.|.++.+++||||++| +||
T Consensus       327 ~----------~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~-~dP  395 (489)
T PLN02936        327 P----------PTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVW-ERA  395 (489)
T ss_pred             C----------CCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhC-CCc
Confidence            2          48899999999999999999999999988888877777779999999999999999999999999 899


Q ss_pred             CCcCCCcccCCCCCcc-ccCCCccccCCCCcccccccccccccc
Q 012330          419 EEFKPERWLDENGIFQ-KESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       419 ~~F~P~Rfl~~~~~~~-~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      ++|+||||++++.... ...+..|+|||.|+|.|||.. ||..+
T Consensus       396 ~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~-la~~~  438 (489)
T PLN02936        396 EEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQ-FALLE  438 (489)
T ss_pred             cccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHH-HHHHH
Confidence            9999999997543211 112457999999999999876 66544


No 27 
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00  E-value=7.4e-61  Score=451.20  Aligned_cols=412  Identities=15%  Similarity=0.168  Sum_probs=306.1

Q ss_pred             HHHHHHHHHHHHHHHHhh-hcccCCCCCCCCCCcchhhhhhcc--hhhHHHHHHHHHhhcCc-eEEecCCcceEEecChh
Q 012330           12 ALAIALAILVVQIVTKTL-TQKSGNKQKKYHPIGGTVFNQLLN--FNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPA   87 (466)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~-~~~~~~pgp~~~p~~G~~~~~~~~--~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~   87 (466)
                      .++++|.++..+++.|.. .+.+.||||.++|++|+++.+...  ..++..++.+++++||+ |.++++++++++++||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe   87 (472)
T PLN02987          8 LLLSSLAAIFFLLLRRTRYRRMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPE   87 (472)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHH
Confidence            344444444445555533 233578999999999998876432  14578889999999995 78888899999999999


Q ss_pred             hHHHhhhcCCCCCCCchhhHHHHHhhcc-CceeecCCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012330           88 NVEYMLKTNFDNYGKGSYNYSILKDLLG-DGIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAAN  166 (466)
Q Consensus        88 ~i~~il~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~  166 (466)
                      ++++++.++...|.++.. . ....++| ++++..+|+.|+++|+++.+.++.+.++.+....+.+.++..++.|     
T Consensus        88 ~~~~il~~~~~~f~~~~~-~-~~~~~lg~~~l~~~~g~~wr~~R~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----  160 (472)
T PLN02987         88 TNRFILQNEGKLFECSYP-G-SISNLLGKHSLLLMKGNLHKKMHSLTMSFANSSIIKDHLLLDIDRLIRFNLDSW-----  160 (472)
T ss_pred             HHHHHHhCCCceEEecCc-H-HHHHHhCcccccccCcHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhh-----
Confidence            999999887666755421 2 2234445 5788889999999999987644555555533212222333323322     


Q ss_pred             CCCceehHHhHHHHHHHHHHHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhhhhhHHHHHHhccCchHHHHHHHH
Q 012330          167 SDKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYVDIFWKIKKLLNIGSEARLKQRIE  246 (466)
Q Consensus       167 ~~~~vdl~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  246 (466)
                       .+++++.+.+..++++++++++||.+.....      ..+.+.+........   ..+++.    + ...+++..++.+
T Consensus       161 -~~~v~~~~~~~~~t~~vi~~~~fg~~~~~~~------~~~~~~~~~~~~~~~---~~~~p~----l-~~~~~~~~~~~~  225 (472)
T PLN02987        161 -SSRVLLMEEAKKITFELTVKQLMSFDPGEWT------ESLRKEYVLVIEGFF---SVPLPL----F-STTYRRAIQART  225 (472)
T ss_pred             -ccceehHHHHHHHHHHHHHHHHcCCCChHHH------HHHHHHHHHHHhhhh---cCCCcC----C-CchHHHHHHHHH
Confidence             2469999999999999999999997653211      222222222211111   111111    1 234567788899


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHhhccC---ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHH
Q 012330          247 VIDTFVYKIIRKKTDQMHDFQEEYTSMKKEDILSRFLQVT---DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAV  323 (466)
Q Consensus       247 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~---~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~  323 (466)
                      ++.+++.+.++++++....+.     ....|+++.+++..   +++++.+++..+++||+|||+++++|++++|++||++
T Consensus       226 ~~~~~~~~~i~~r~~~~~~~~-----~~~~d~l~~ll~~~~~~~~~ei~~~~~~l~~Ag~~tta~~l~~~l~~L~~~P~~  300 (472)
T PLN02987        226 KVAEALTLVVMKRRKEEEEGA-----EKKKDMLAALLASDDGFSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLA  300 (472)
T ss_pred             HHHHHHHHHHHHHHhhhhccC-----cccccHHHHHHhcCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhChHH
Confidence            999999999999876543211     12468999999754   8899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCCCEEEEe
Q 012330          324 QEKIVQEVKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDMVCYQ  403 (466)
Q Consensus       324 ~~~l~~Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~v~~~  403 (466)
                      |+++++|++.+.+..+..      ..++.+++.+|||++||++|++|++|+++...|++.+|.++ +||.||+|+.|+++
T Consensus       301 ~~~l~~E~~~~~~~~~~~------~~~~~~~l~~lpyl~a~i~EtLRl~p~~~~~~R~~~~d~~~-~G~~ip~Gt~v~~~  373 (472)
T PLN02987        301 LAQLKEEHEKIRAMKSDS------YSLEWSDYKSMPFTQCVVNETLRVANIIGGIFRRAMTDIEV-KGYTIPKGWKVFAS  373 (472)
T ss_pred             HHHHHHHHHHHHcccCCC------CCCCHHHHhcChHHHHHHHHHHHccCCcCCccccCCCCeeE-CCEEECCCCEEEEe
Confidence            999999999997532211      23588999999999999999999999999888888888777 99999999999999


Q ss_pred             ecccccCCCCccCCCCCcCCCcccCCCCCccccCCCccccCCCCcccccccccccccc
Q 012330          404 AYAMGRMKFIWGDDAEEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       404 ~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      .+.+|+||++| +||++|+||||++++...  ..+..++|||+|+|.|||.. ||..+
T Consensus       374 ~~~~~~d~~~~-~~p~~F~PeRfl~~~~~~--~~~~~~l~FG~G~r~C~G~~-lA~~e  427 (472)
T PLN02987        374 FRAVHLDHEYF-KDARTFNPWRWQSNSGTT--VPSNVFTPFGGGPRLCPGYE-LARVA  427 (472)
T ss_pred             hHHhhCCcccC-CCccccCcccCCCCCCCC--CCCcceECCCCCCcCCCcHH-HHHHH
Confidence            99999999999 999999999999754321  13457999999999999876 66554


No 28 
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00  E-value=3.4e-61  Score=454.85  Aligned_cols=397  Identities=16%  Similarity=0.175  Sum_probs=303.3

Q ss_pred             cccCCCCCCCCCCcchhhhhhcc--hhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhH
Q 012330           31 QKSGNKQKKYHPIGGTVFNQLLN--FNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNY  107 (466)
Q Consensus        31 ~~~~~pgp~~~p~~G~~~~~~~~--~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~  107 (466)
                      +++.||||+++|++|+++.+..+  ..+++.++.+++++||+ |.++++++++++++||+++++++.++...|..+.  .
T Consensus         5 ~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~--~   82 (452)
T PLN03141          5 KSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAY--P   82 (452)
T ss_pred             CCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccC--c
Confidence            44688999999999998877442  23588999999999995 8888999999999999999999998766665432  1


Q ss_pred             HHHHhhccC-ceeecCCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHHH
Q 012330          108 SILKDLLGD-GIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSIF  186 (466)
Q Consensus       108 ~~~~~~~~~-~l~~~~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i~  186 (466)
                      .....++|. +++..+|+.|+++|+++.+.|+..++.......+.+.++.+++.+.    .+..+|+.+.+..+++++++
T Consensus        83 ~~~~~l~g~~~~~~~~g~~wr~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~vi~  158 (452)
T PLN03141         83 KSLTELMGKSSILLINGSLQRRVHGLIGAFLKSPHLKAQITRDMERYVSESLDSWR----DDPPVLVQDETKKIAFEVLV  158 (452)
T ss_pred             hhHHHHhCcccccccCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcc----CCCCEEhHHHHHHHHHHHHH
Confidence            123344553 5788899999999999999998887776433344445554444432    35689999999999999999


Q ss_pred             HHHhcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhhhhhHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012330          187 KVAFGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYVDIFWKIKKLLNIGSEARLKQRIEVIDTFVYKIIRKKTDQMHDF  266 (466)
Q Consensus       187 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  266 (466)
                      .++||.+...      ....+...+..+.....     .++   .+++.....+..++.+.+.+++.+.++++++..+.+
T Consensus       159 ~~~~G~~~~~------~~~~~~~~~~~~~~~~~-----~~~---~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~  224 (452)
T PLN03141        159 KALISLEPGE------EMEFLKKEFQEFIKGLM-----SLP---IKLPGTRLYRSLQAKKRMVKLVKKIIEEKRRAMKNK  224 (452)
T ss_pred             HHHcCCCchH------HHHHHHHHHHHHhhhHH-----hCc---cCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999976531      11223333333222111     011   112222334556778889999999999887654321


Q ss_pred             hhhhhccchhhHHHHhhccC----ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCCCcch
Q 012330          267 QEEYTSMKKEDILSRFLQVT----DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATGAKDISD  342 (466)
Q Consensus       267 ~~~~~~~~~~d~l~~ll~~~----~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~  342 (466)
                      .+.. .....|+++.+++..    +++++.+++..+++||+|||+++++|++++|++||++|+++++|++.+.+......
T Consensus       225 ~~~~-~~~~~d~l~~ll~~~~~~l~~~~i~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~  303 (452)
T PLN03141        225 EEDE-TGIPKDVVDVLLRDGSDELTDDLISDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLKADTG  303 (452)
T ss_pred             Cccc-cCChhhHHHHHHhcCCCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhccCCCC
Confidence            1000 012468999998754    78999999999999999999999999999999999999999999998864211000


Q ss_pred             hhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCCCEEEEeecccccCCCCccCCCCCcC
Q 012330          343 FLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKFIWGDDAEEFK  422 (466)
Q Consensus       343 ~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~  422 (466)
                           ..++.+++.+||||+|||+|++|++|+++..+|.+.+|.++ +||.||||+.|+++.+++|+||++| +||++|+
T Consensus       304 -----~~~~~~~~~~lpyl~avi~E~lRl~p~~~~~~R~~~~d~~l-~g~~IPkG~~V~~~~~~~~~d~~~~-~dP~~F~  376 (452)
T PLN03141        304 -----EPLYWTDYMSLPFTQNVITETLRMGNIINGVMRKAMKDVEI-KGYLIPKGWCVLAYFRSVHLDEENY-DNPYQFN  376 (452)
T ss_pred             -----CCCCHHHHhccHHHHHHHHHHHhccCCcCCcceeecCCeeE-CCEEECCCCEEEEehHhccCCchhc-CCccccC
Confidence                 13689999999999999999999999998888988888777 9999999999999999999999999 9999999


Q ss_pred             CCcccCCCCCccccCCCccccCCCCcccccccccccccc
Q 012330          423 PERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       423 P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      ||||++++.     .+..|+|||+|+|.|+|.. ||..+
T Consensus       377 PeRfl~~~~-----~~~~~~pFG~G~R~C~G~~-lA~~e  409 (452)
T PLN03141        377 PWRWQEKDM-----NNSSFTPFGGGQRLCPGLD-LARLE  409 (452)
T ss_pred             cccccCCCC-----CCCCCCCCCCCCCCCChHH-HHHHH
Confidence            999997532     2557999999999999765 66554


No 29 
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00  E-value=2.9e-60  Score=455.46  Aligned_cols=390  Identities=17%  Similarity=0.241  Sum_probs=300.6

Q ss_pred             cCCCCCCCCCCcchhhhhhcc--hhhHHHHHHHHHhhcCc---eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhH
Q 012330           33 SGNKQKKYHPIGGTVFNQLLN--FNRLHHYMTDLAAKHGT---YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNY  107 (466)
Q Consensus        33 ~~~pgp~~~p~~G~~~~~~~~--~~~~~~~~~~~~~~yg~---~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~  107 (466)
                      +.||||+++|++|+++.+...  ..+++.++.+++++||+   |.+++++.++++++||+++++++.++ +.|.++... 
T Consensus        42 ~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~~~~-  119 (490)
T PLN02302         42 PLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPGWPE-  119 (490)
T ss_pred             CCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccCCch-
Confidence            689999999999998877543  23578899999999995   67778899999999999999999876 556544221 


Q ss_pred             HHHHhhccC-ceeecCCcchHHHHhhhhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHH
Q 012330          108 SILKDLLGD-GIFTVDGEKWREQRKISSHEFS-TKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSI  185 (466)
Q Consensus       108 ~~~~~~~~~-~l~~~~g~~w~~~R~~l~~~~s-~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i  185 (466)
                      .... .+|. +++..+|+.|+++|+.+.+.|+ .++++.+.+ .+.+.++.+++.+..    ++.+|+.+.+..++++++
T Consensus       120 ~~~~-~~g~~~~~~~~g~~w~~~R~~~~~~f~~~~~l~~~~~-~i~~~v~~~~~~~~~----~~~v~~~~~~~~~~~~vi  193 (490)
T PLN02302        120 STVE-LIGRKSFVGITGEEHKRLRRLTAAPVNGPEALSTYIP-YIEENVKSCLEKWSK----MGEIEFLTELRKLTFKII  193 (490)
T ss_pred             hHHH-HhccccccccCcHHHHHHHHHHHhccCCHHHHHHHHH-HHHHHHHHHHHHhcC----CCCEehHHHHHHHHHHHH
Confidence            1222 3453 4566799999999999999995 678888885 777788888777642    346999999999999999


Q ss_pred             HHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhhhhhHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012330          186 FKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYVDIFWKIKKLLNIGSEARLKQRIEVIDTFVYKIIRKKTDQMHD  265 (466)
Q Consensus       186 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  265 (466)
                      +.++||.+.....      ..+...+.......     ...+   ..++....++..++.+.+.+++.+.++++++....
T Consensus       194 ~~~~~G~~~~~~~------~~~~~~~~~~~~~~-----~~~~---~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~  259 (490)
T PLN02302        194 MYIFLSSESELVM------EALEREYTTLNYGV-----RAMA---INLPGFAYHRALKARKKLVALFQSIVDERRNSRKQ  259 (490)
T ss_pred             HHHHcCCCChHHH------HHHHHHHHHHHHHh-----hhCC---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999998653211      12222111111100     0000   01121223455566778888888888888755332


Q ss_pred             hhhhhhccchhhHHHHhhccC-------ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCC
Q 012330          266 FQEEYTSMKKEDILSRFLQVT-------DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATGAK  338 (466)
Q Consensus       266 ~~~~~~~~~~~d~l~~ll~~~-------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~  338 (466)
                      +.    .....|+++.+++..       +++++.+++..+++||+|||+++++|++++|++||++|+|+++|++.+.+..
T Consensus       260 ~~----~~~~~d~l~~ll~~~~~~~~~~~~~~i~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~  335 (490)
T PLN02302        260 NI----SPRKKDMLDLLLDAEDENGRKLDDEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKR  335 (490)
T ss_pred             cC----CCCcCCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC
Confidence            11    123578999998642       6789999999999999999999999999999999999999999999998643


Q ss_pred             CcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCCCeeecCCCEEEEeecccccCCCCccCCC
Q 012330          339 DISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKFIWGDDA  418 (466)
Q Consensus       339 ~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~~~g~~p  418 (466)
                      ....     ..++++++++||||+|||+|++|++|++|...|++.+|.++ +||.||||+.|.++.+++||||++| +||
T Consensus       336 ~~~~-----~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~~~R~~~~d~~~-~g~~Ip~Gt~v~~~~~~~~rd~~~~-~dP  408 (490)
T PLN02302        336 PPGQ-----KGLTLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEV-NGYTIPKGWKVLAWFRQVHMDPEVY-PNP  408 (490)
T ss_pred             CCCC-----CCCCHHHHhcChHHHHHHHHHHHhCCCcccchhcccCCEeE-CCEEECCCCEEEeeHHHhcCCcccC-CCc
Confidence            2110     12689999999999999999999999999988998887766 9999999999999999999999999 999


Q ss_pred             CCcCCCcccCCCCCccccCCCccccCCCCcccccccccccccc
Q 012330          419 EEFKPERWLDENGIFQKESPFKFTAFQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       419 ~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~~~~~~~  461 (466)
                      ++|+||||++..     ..+..++|||+|+|.|+|.. +|..+
T Consensus       409 ~~F~PeR~~~~~-----~~~~~~~pFG~G~r~C~G~~-lA~~e  445 (490)
T PLN02302        409 KEFDPSRWDNYT-----PKAGTFLPFGLGSRLCPGND-LAKLE  445 (490)
T ss_pred             cccChhhcCCCC-----CCCCCccCCCCCCcCCCcHH-HHHHH
Confidence            999999999753     23567999999999999876 66544


No 30 
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=2.6e-59  Score=404.65  Aligned_cols=396  Identities=18%  Similarity=0.256  Sum_probs=321.1

Q ss_pred             cCCCCCCCC-CCcchhhhhhcchhhHHHHHHHHHhhcCc-eEEecCCcceEEecChhhHHHhhhcCCCCCCCchhhHHHH
Q 012330           33 SGNKQKKYH-PIGGTVFNQLLNFNRLHHYMTDLAAKHGT-YRLLGPFRSEVYSSDPANVEYMLKTNFDNYGKGSYNYSIL  110 (466)
Q Consensus        33 ~~~pgp~~~-p~~G~~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~  110 (466)
                      ..||--++| |++|+.+.|..+   +.+++++.++|||+ |++.++|+.+.++.+|+....+++.....++...++..+.
T Consensus        31 ~~PPli~gwiP~lG~a~~fgk~---P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~  107 (486)
T KOG0684|consen   31 KEPPLIKGWIPWLGSALAFGKD---PLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLT  107 (486)
T ss_pred             CCCcccccCcchhhHHHHhccC---HHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhh
Confidence            577777665 999999999555   99999999999995 8999999999999999999999987656677777777788


Q ss_pred             HhhccCceee-cCCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHHHHHH
Q 012330          111 KDLLGDGIFT-VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSIFKVA  189 (466)
Q Consensus       111 ~~~~~~~l~~-~~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i~~~~  189 (466)
                      .+.+|.|+.. .+.....++.+.+...+...+++.+.+.+.++..+.+...+.   +.+....+..+...+++.+.-.+.
T Consensus       108 ~~vFg~~v~~d~~~~~~~e~~~~~k~~L~~~~lk~~~e~m~~el~~~f~~~~~---~s~~~d~l~~~~~~ii~tAs~~ll  184 (486)
T KOG0684|consen  108 TPVFGKGVVYDVPNHVMMEQKKFFKSALGGVALKSLVELMLEELHAYFETSLG---ESGETDGLYTFCRLIIFTASRLLL  184 (486)
T ss_pred             hhhcCCCccccCCCchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhcccc---cccchhHhhhhhHHHhhhhHHHhh
Confidence            8999988865 567788899999999999999999996444443334433233   256677888889999998888888


Q ss_pred             hcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhhhhhHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012330          190 FGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYVDIFWKIKKLLNIGSEARLKQRIEVIDTFVYKIIRKKTDQMHDFQEE  269 (466)
Q Consensus       190 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  269 (466)
                      +|+.....+      ......+.+....+.  .++..  +..++|....++..++++.+.+.+...+.++++...+    
T Consensus       185 ~~e~r~~~d------~~~a~l~~dLd~~F~--~~d~~--FP~~LP~~~~r~~~ra~~~i~k~f~~~i~~rr~s~s~----  250 (486)
T KOG0684|consen  185 GGEVRDQLD------ADVAKLYHDLDQGFQ--PFDFL--FPYNLPIPLLRRRDRARKKISKIFSKIILDRRASISK----  250 (486)
T ss_pred             hhhhhhhhc------chHHHHHHHHhcccc--chHhh--cccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcccc----
Confidence            888766543      222222233222111  11111  1116677788888899999999999999999877643    


Q ss_pred             hhccchhhHHHHhhc--cC----ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCCCcchh
Q 012330          270 YTSMKKEDILSRFLQ--VT----DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATGAKDISDF  343 (466)
Q Consensus       270 ~~~~~~~d~l~~ll~--~~----~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~  343 (466)
                          ...|++..+++  ..    ++++++..++.++|||+.||+.+..|++++|++|||+++++++|+++++|....   
T Consensus       251 ----~~~dmlq~l~~~y~dg~~~te~e~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~---  323 (486)
T KOG0684|consen  251 ----WDNDMLQSLMEKYKDGRPTTEEEIAGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGEKKE---  323 (486)
T ss_pred             ----ccHHHHHHHHHHhhcCCcCcHHHHHHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccCC---
Confidence                35678888887  21    889999999999999999999999999999999999999999999999977642   


Q ss_pred             hhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCCC---CeeecCCCEEEEeecccccCCCCccCCCCC
Q 012330          344 LKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLPD---GFSVRKGDMVCYQAYAMGRMKFIWGDDAEE  420 (466)
Q Consensus       344 ~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~~---g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~  420 (466)
                           .++.+++++||+|++||+|||||+||.+...|.+.+|.++++   .|.||+|+.|.++...+|+||++| +||++
T Consensus       324 -----~l~~d~L~~lplL~~~IkEtLRL~~p~~~~~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif-~dp~~  397 (486)
T KOG0684|consen  324 -----KLTYDQLKDLPLLDSCIKETLRLHPPAHSLMRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIF-PDPED  397 (486)
T ss_pred             -----CCCHHHHhcchHHHHHHHHHHhcCCchhhHHHhhccceeeccCCcceecCCCCEEEeccccccCCcccc-CChhh
Confidence                 379999999999999999999999999999999999999966   399999999999999999999999 99999


Q ss_pred             cCCCcccCCCCCc---cccCCCccccCCCCccccccccccccccc
Q 012330          421 FKPERWLDENGIF---QKESPFKFTAFQVSTVSRLLIKQFSKCFW  462 (466)
Q Consensus       421 F~P~Rfl~~~~~~---~~~~~~~~~~Fg~G~~~C~G~~~~~~~~~  462 (466)
                      |+|+||++++++.   ...-+..+||||+|+|.|||.. ||..+.
T Consensus       398 Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~-FA~~eI  441 (486)
T KOG0684|consen  398 FKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRS-FAYLEI  441 (486)
T ss_pred             CChhhccCCCcccccccccccccccccCCCcCCCCchH-HHHHHH
Confidence            9999999887664   2223445799999999999766 887653


No 31 
>PLN02648 allene oxide synthase
Probab=100.00  E-value=3e-51  Score=382.75  Aligned_cols=386  Identities=16%  Similarity=0.163  Sum_probs=269.1

Q ss_pred             cCCCCCCCCCCcchhhhhhc--chhhHHHHHHHHHhhcC--ceEEecCCcce-------EEecChhhHHHhhhc----CC
Q 012330           33 SGNKQKKYHPIGGTVFNQLL--NFNRLHHYMTDLAAKHG--TYRLLGPFRSE-------VYSSDPANVEYMLKT----NF   97 (466)
Q Consensus        33 ~~~pgp~~~p~~G~~~~~~~--~~~~~~~~~~~~~~~yg--~~~~~~~~~~~-------vvv~~~~~i~~il~~----~~   97 (466)
                      +.|||+.++|++|+++.+++  ...++..|+.+.++|||  +|+..++++|+       |+++||++++.+|.+    +.
T Consensus        17 ~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~~~   96 (480)
T PLN02648         17 REIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVDKR   96 (480)
T ss_pred             CCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhcccc
Confidence            57999999999999988766  34456899999999999  57778888666       999999999999975    32


Q ss_pred             CCCCCchhhHHHHHhhcc-C---ceeecCCcchHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeh
Q 012330           98 DNYGKGSYNYSILKDLLG-D---GIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDI  173 (466)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~-~---~l~~~~g~~w~~~R~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl  173 (466)
                      ..+.. .+. .... ++| +   +++..+|+.|+++|+++.+.|+ ..++.+.+ .+.+.++.+++.|......+..+|+
T Consensus        97 ~~~~~-~~~-~~~~-l~G~~~~~s~~~~~g~~H~r~Rrll~~~f~-~~~~~~~~-~m~~~~~~~~~~w~~~~~~~~~vdv  171 (480)
T PLN02648         97 DVFTG-TYM-PSTA-FTGGYRVLSYLDPSEPKHAKLKSFLFELLK-SRHRRFIP-EFRAAFAELFDTWEAELAKKGKAEF  171 (480)
T ss_pred             cccee-eec-cCcc-ccCCceeeeecCCCCchHHHHHHHHHHHHH-Hhhhhhhh-HHHHHHHHHHHHHHHHHhhCCCccc
Confidence            22332 222 2233 666 4   5667899999999999999999 47788774 8888999999999654344557999


Q ss_pred             HHhHHHHHHHHHHHHHhcCCCcccCCCCCCcchhHHHHHHHHHHhHhhhh-hhhHHH-HH----HhccCchHHHHHHHHH
Q 012330          174 QDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDASAMTLWRYV-DIFWKI-KK----LLNIGSEARLKQRIEV  247 (466)
Q Consensus       174 ~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l-~~----~~~~~~~~~~~~~~~~  247 (466)
                      .+.++.+++++++.++||.+.+. +...   ..+...+............ ..++.+ ..    ..+.+.. ...+..+.
T Consensus       172 ~~~~~~lt~~vi~~~lfG~~~~~-~~l~---~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~  246 (480)
T PLN02648        172 NDPLDQMAFNFLCKALTGKDPSE-TALG---SDGPALIQKWLALQLAPLASTGLPHVLEELLLHTFPLPFF-LVKSDYDK  246 (480)
T ss_pred             cchHHHHHHHHHHHHHcCCCcch-hhhc---cchhHHHHHHHHHHhhHHHHcCchHHHHHHhhcccCCchh-hhhccHHH
Confidence            99999999999999999986653 1011   1111111111110000000 000000 00    0000000 00111112


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHhhccC-ChhHHHHHHHH-HHHhhhhhHHHHHHHHHHHHhcChH-HH
Q 012330          248 IDTFVYKIIRKKTDQMHDFQEEYTSMKKEDILSRFLQVT-DPKYLRDIILN-FVIAGKDTTAATLSWFIYMLCKHPA-VQ  324 (466)
Q Consensus       248 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~-~~~~i~~~~~~-~~~ag~~tt~~~l~~~l~~l~~~p~-~~  324 (466)
                      +.+++.+.+.                   ++++...+.. +++++.++++. +.+++++|++++++|++++|++||+ +|
T Consensus       247 ~~~~~~~~~~-------------------~ll~~~~~~~l~~~ei~~~~l~~~~~~t~~~~~~~l~~~l~~L~~~p~~v~  307 (480)
T PLN02648        247 LYDFFRASAT-------------------EALDLAEKFGISREEALHNLLFVLGFNAFGGFKIFFPALLKWVGRAGEELQ  307 (480)
T ss_pred             HHHHHHHHHH-------------------HHHHHHHhcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHH
Confidence            2222222211                   1222111111 78888888764 4566777788899999999999995 99


Q ss_pred             HHHHHHHHHHhCCCCcchhhhhcCCCCHHHhhcChhHHHHHHhHhccCCCCCCCcccccccccCC---CCeeecCCCEEE
Q 012330          325 EKIVQEVKEATGAKDISDFLKVAGCISEEALEKMHYLHAAITETLRLYPAVPVDAKMCFSDDTLP---DGFSVRKGDMVC  401 (466)
Q Consensus       325 ~~l~~Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~r~~~~~~~~~---~g~~ip~G~~v~  401 (466)
                      ++|++||+.+.+...        +.++.+++++||||++||+|+||++|+++...|++.+|.++.   +||.||||+.|+
T Consensus       308 ~klr~Ei~~~~~~~~--------~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~r~a~~d~~l~~~~~g~~IpkG~~V~  379 (480)
T PLN02648        308 ARLAEEVRSAVKAGG--------GGVTFAALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLF  379 (480)
T ss_pred             HHHHHHHHHHhccCC--------CCCCHHHHhcCHHHHHHHHHHHhhcCCcccccceecCCEEEecCCceEEECCCCEEE
Confidence            999999999986321        236999999999999999999999999999999998887774   379999999999


Q ss_pred             EeecccccCCCCccCCCCCcCCCcccCCCCCccccCCCcccc---------CCCCcccccccccccccc
Q 012330          402 YQAYAMGRMKFIWGDDAEEFKPERWLDENGIFQKESPFKFTA---------FQVSTVSRLLIKQFSKCF  461 (466)
Q Consensus       402 ~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~---------Fg~G~~~C~G~~~~~~~~  461 (466)
                      ++.+.+||||++| +||++|||+||+++++..    ...+++         ||+|+|.|+|.. ||..+
T Consensus       380 ~~~~~~hrdp~~~-~dP~~F~PeRf~~~~~~~----~~~~~~f~~g~~~~~~G~G~R~C~G~~-~A~~e  442 (480)
T PLN02648        380 GYQPLVTRDPKVF-DRPEEFVPDRFMGEEGEK----LLKYVFWSNGRETESPTVGNKQCAGKD-FVVLV  442 (480)
T ss_pred             EChHHHhCCcccC-CCcceeCCCCCCCCCccc----cccccccCCCcccCCCCCCCccCccHH-HHHHH
Confidence            9999999999999 999999999998753221    112333         467789999876 65543


No 32 
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00  E-value=6.3e-47  Score=349.92  Aligned_cols=331  Identities=25%  Similarity=0.368  Sum_probs=257.3

Q ss_pred             HHHHHHHHhhcCc-eEEecCCc--ceEEecChhhHHHhhhcCCCCCCCc---hhhHHHHHhhccCc-eeecCCcchHHHH
Q 012330           58 HHYMTDLAAKHGT-YRLLGPFR--SEVYSSDPANVEYMLKTNFDNYGKG---SYNYSILKDLLGDG-IFTVDGEKWREQR  130 (466)
Q Consensus        58 ~~~~~~~~~~yg~-~~~~~~~~--~~vvv~~~~~i~~il~~~~~~~~~~---~~~~~~~~~~~~~~-l~~~~g~~w~~~R  130 (466)
                      ........+.||. +.....+.  ..+++++++.++++++++. .+++.   ..........++.+ ++..+|+.|.++|
T Consensus        25 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~R  103 (411)
T COG2124          25 RFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRLR  103 (411)
T ss_pred             hhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhccccceeecCCHHHHHHH
Confidence            3445556666775 33444333  3799999999999998862 12221   11111134556655 7889999999999


Q ss_pred             hhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceehHHhHHHHHHHHHHHHHhcCCCcccCCCCCCcchhHHH
Q 012330          131 KISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSA  210 (466)
Q Consensus       131 ~~l~~~~s~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~  210 (466)
                      +++.++|+++.++.+.+ .+.+.++.+++.+ .  +. ...++.+....+++++++ .+||.+....       ..+...
T Consensus       104 kl~~~~F~~~~~~~~~~-~i~~~~~~~~~~~-~--~~-~~~~v~~~a~~l~~~vi~-~l~Gv~~~~~-------~~~~~~  170 (411)
T COG2124         104 KLLAPAFTPRALRGYRP-LIREIADRLLDDL-W--QG-GADLVLDFAAELTLRVIA-ELLGVPLEDR-------PQLLRW  170 (411)
T ss_pred             HHhccccCHHHHHHHHH-HHHHHHHHHHHhc-c--cC-CchhHHHHhhhhhHHHHH-HHhCCCHHHH-------HHHHHH
Confidence            99999999999999995 7888888787777 3  23 788999999999999999 9999876532       222222


Q ss_pred             HHHHHHHhHhhhhhhhHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHhhccC----
Q 012330          211 FDDASAMTLWRYVDIFWKIKKLLNIGSEARLKQRIEVIDTFVYKIIRKKTDQMHDFQEEYTSMKKEDILSRFLQVT----  286 (466)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~----  286 (466)
                      ........    .      ....+.....+..++..++.+++..+|++++.+           ..+|+++.|+.+.    
T Consensus       171 ~~~~~~~~----~------~~~~~~~~~~~~~~a~~~~~~~~~~li~~rR~~-----------~~~dlls~l~~a~~~~~  229 (411)
T COG2124         171 SDALLLRL----D------PDLGPEEPWRRARAARRELDAYLRALIAERRAA-----------PRDDLLSLLLSAEDDGG  229 (411)
T ss_pred             HHHHHhcc----C------cccCCcccHHHHHHHHHHHHHHHHHHHHHhccC-----------CcccHHHHHHHHhhCCC
Confidence            22222110    0      111122346778899999999999999999932           3779999999764    


Q ss_pred             ---ChhHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCCCcchhhhhcCCCCHHHhhcChhHHH
Q 012330          287 ---DPKYLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEVKEATGAKDISDFLKVAGCISEEALEKMHYLHA  363 (466)
Q Consensus       287 ---~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp~l~a  363 (466)
                         +++||.++++.+++||+|||+++++|+++.|++||++++++++|.+.                         ||+++
T Consensus       230 ~~lsd~Ei~~~~~~ll~AGheTTa~~l~~a~~~L~~~P~~~~~l~~e~~~-------------------------~~~~~  284 (411)
T COG2124         230 GRLSDDEIRDELITLLVAGHETTANALAWALYALLRHPDQLAKLRAEPDR-------------------------PLLEA  284 (411)
T ss_pred             CcCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCchHHHHHHhCcch-------------------------HHHHH
Confidence               68899999999999999999999999999999999999999998662                         69999


Q ss_pred             HHHhHhccCCCCCCCcccccccccCCCCeeecCCCEEEEeecccccCCCCccCCCCCcCCCcccCCCCCccccCCCcccc
Q 012330          364 AITETLRLYPAVPVDAKMCFSDDTLPDGFSVRKGDMVCYQAYAMGRMKFIWGDDAEEFKPERWLDENGIFQKESPFKFTA  443 (466)
Q Consensus       364 ~i~E~lRl~~~~~~~~r~~~~~~~~~~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~  443 (466)
                      +|+|+||++|+++...|.+.+|.++ +|+.||||+.|.++.+++||||++| +||++|||+||.           ..++|
T Consensus       285 ~v~E~LR~~ppv~~~~R~~~~d~~i-gg~~Ip~G~~V~~~~~~anrDp~~f-~~P~~F~p~R~~-----------~~~l~  351 (411)
T COG2124         285 VVEETLRLYPPVPLARRVATEDVEL-GGYRIPAGTVVLLSIGAANRDPEVF-PDPDEFDPERFN-----------NAHLP  351 (411)
T ss_pred             HHHHHHHhCCchhccceeccCCEee-CCEEeCCCCEEEecHhhhcCChhhC-CChhhcCCCCCC-----------CCCcC
Confidence            9999999999999955555555555 9999999999999999999999999 999999999997           23899


Q ss_pred             CCCCccccccccccccccc
Q 012330          444 FQVSTVSRLLIKQFSKCFW  462 (466)
Q Consensus       444 Fg~G~~~C~G~~~~~~~~~  462 (466)
                      ||+|+|.|+|.. ||....
T Consensus       352 FG~G~H~ClG~~-lA~~E~  369 (411)
T COG2124         352 FGGGPHRCLGAA-LARLEL  369 (411)
T ss_pred             CCCCCccccCHH-HHHHHH
Confidence            999999999765 665543


No 33 
>PF08492 SRP72:  SRP72 RNA-binding domain;  InterPro: IPR013699  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=67.09  E-value=4  Score=25.82  Aligned_cols=8  Identities=63%  Similarity=1.460  Sum_probs=6.7

Q ss_pred             CCCcccCC
Q 012330          422 KPERWLDE  429 (466)
Q Consensus       422 ~P~Rfl~~  429 (466)
                      ||||||+-
T Consensus        44 DPERWLP~   51 (59)
T PF08492_consen   44 DPERWLPK   51 (59)
T ss_pred             CccccCch
Confidence            79999975


No 34 
>PF05366 Sarcolipin:  Sarcolipin;  InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=58.66  E-value=14  Score=18.84  Aligned_cols=15  Identities=0%  Similarity=0.463  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHh
Q 012330           14 AIALAILVVQIVTKT   28 (466)
Q Consensus        14 ~~~l~~~~~~~~~~~   28 (466)
                      ++++.+++.|++.|.
T Consensus        14 vvlitvilmwllvrs   28 (31)
T PF05366_consen   14 VVLITVILMWLLVRS   28 (31)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHh
Confidence            333444445555444


No 35 
>PF05952 ComX:  Bacillus competence pheromone ComX;  InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible.  DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=56.94  E-value=11  Score=23.72  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=18.4

Q ss_pred             HHHHHHhcChHHHHHHHHHHHHHh
Q 012330          312 WFIYMLCKHPAVQEKIVQEVKEAT  335 (466)
Q Consensus       312 ~~l~~l~~~p~~~~~l~~Ei~~~~  335 (466)
                      -++.||.+||++.+++.+.=.+.+
T Consensus         4 ~iV~YLv~nPevl~kl~~g~asLI   27 (57)
T PF05952_consen    4 EIVNYLVQNPEVLEKLKEGEASLI   27 (57)
T ss_pred             HHHHHHHHChHHHHHHHcCCeeEe
Confidence            467899999999999987544333


No 36 
>PRK13664 hypothetical protein; Provisional
Probab=54.69  E-value=30  Score=21.40  Aligned_cols=22  Identities=23%  Similarity=0.375  Sum_probs=12.2

Q ss_pred             CCCCCchHHHHHHHHHHHHHHH
Q 012330            1 MDFLSIPFSFKALAIALAILVV   22 (466)
Q Consensus         1 m~~~~~~~~~~~~~~~l~~~~~   22 (466)
                      |..++-.++++++++++.+++.
T Consensus         1 M~WLadyWWilill~lvG~i~N   22 (62)
T PRK13664          1 MDWLAKYWWILVLVFLVGVLLN   22 (62)
T ss_pred             CchHHHHHHHHHHHHHHHHHHH
Confidence            5555655666555555555543


No 37 
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=51.69  E-value=73  Score=21.56  Aligned_cols=18  Identities=11%  Similarity=0.318  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 012330           12 ALAIALAILVVQIVTKTL   29 (466)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~   29 (466)
                      +++++++|++++..||++
T Consensus        10 ~V~V~IVclliya~YRR~   27 (92)
T PHA02681         10 VIVISIVCYIVIMMYRRS   27 (92)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            455555555555555554


No 38 
>PF13980 UPF0370:  Uncharacterised protein family (UPF0370)
Probab=44.71  E-value=45  Score=20.84  Aligned_cols=11  Identities=18%  Similarity=0.174  Sum_probs=5.5

Q ss_pred             CCCCCchHHHH
Q 012330            1 MDFLSIPFSFK   11 (466)
Q Consensus         1 m~~~~~~~~~~   11 (466)
                      |+.++-.++++
T Consensus         1 M~WladYWWii   11 (63)
T PF13980_consen    1 MHWLADYWWII   11 (63)
T ss_pred             CcHHHHHHHHH
Confidence            55555445543


No 39 
>PF15330 SIT:  SHP2-interacting transmembrane adaptor protein, SIT
Probab=39.74  E-value=82  Score=23.03  Aligned_cols=6  Identities=33%  Similarity=0.556  Sum_probs=3.0

Q ss_pred             CCCcch
Q 012330           41 HPIGGT   46 (466)
Q Consensus        41 ~p~~G~   46 (466)
                      -|+.||
T Consensus        46 ~p~YgN   51 (107)
T PF15330_consen   46 DPCYGN   51 (107)
T ss_pred             Cccccc
Confidence            345555


No 40 
>PF05393 Hum_adeno_E3A:  Human adenovirus early E3A glycoprotein;  InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=37.85  E-value=72  Score=21.98  Aligned_cols=10  Identities=30%  Similarity=0.756  Sum_probs=5.4

Q ss_pred             CCCCCCCCcc
Q 012330           36 KQKKYHPIGG   45 (466)
Q Consensus        36 pgp~~~p~~G   45 (466)
                      .-|-+-|++|
T Consensus        62 RrPIYrPvI~   71 (94)
T PF05393_consen   62 RRPIYRPVIG   71 (94)
T ss_pred             cCCccccccc
Confidence            3344556666


No 41 
>PF12554 MOZART1:  Mitotic-spindle organizing gamma-tubulin ring associated;  InterPro: IPR022214  This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important. 
Probab=37.81  E-value=94  Score=18.82  Aligned_cols=42  Identities=12%  Similarity=0.167  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHH
Q 012330          290 YLRDIILNFVIAGKDTTAATLSWFIYMLCKHPAVQEKIVQEV  331 (466)
Q Consensus       290 ~i~~~~~~~~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei  331 (466)
                      ++...+..++-.|.|..+-.+.-.|.+..-||+...++-.|+
T Consensus         6 d~l~eiS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~el   47 (48)
T PF12554_consen    6 DVLHEISDLLNTGLDRETLSICIELCENGVNPEALAAVIKEL   47 (48)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence            455666777777888887777777788888998877776664


No 42 
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=36.49  E-value=74  Score=18.59  Aligned_cols=35  Identities=14%  Similarity=0.166  Sum_probs=21.2

Q ss_pred             CCcchhhhhhcchhhHHHHHHHHHhhcCceEEecC
Q 012330           42 PIGGTVFNQLLNFNRLHHYMTDLAAKHGTYRLLGP   76 (466)
Q Consensus        42 p~~G~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~   76 (466)
                      |.+-....-+.+.-...+.+....++||..++.-+
T Consensus         3 Pvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP   37 (42)
T smart00545        3 PVFYPTMEEFKDPLAYISKIRPQAEKYGICKVVPP   37 (42)
T ss_pred             CeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECC
Confidence            34444445545544455566667888998776654


No 43 
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=35.82  E-value=15  Score=29.03  Aligned_cols=18  Identities=17%  Similarity=-0.047  Sum_probs=15.7

Q ss_pred             CCccccCCCCcccccccc
Q 012330          438 PFKFTAFQVSTVSRLLIK  455 (466)
Q Consensus       438 ~~~~~~Fg~G~~~C~G~~  455 (466)
                      +...+-|..|+-.|-|-|
T Consensus        53 k~a~LIF~SGK~VcTGaK   70 (185)
T COG2101          53 KTAALIFRSGKVVCTGAK   70 (185)
T ss_pred             cceEEEEecCcEEEeccC
Confidence            456899999999999977


No 44 
>PF05961 Chordopox_A13L:  Chordopoxvirus A13L protein;  InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=35.10  E-value=89  Score=20.33  Aligned_cols=15  Identities=13%  Similarity=0.211  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHHH
Q 012330           12 ALAIALAILVVQIVT   26 (466)
Q Consensus        12 ~~~~~l~~~~~~~~~   26 (466)
                      +++++++.++++-++
T Consensus         9 ~ICVaii~lIlY~iY   23 (68)
T PF05961_consen    9 IICVAIIGLILYGIY   23 (68)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333


No 45 
>PHA02902 putative IMV membrane protein; Provisional
Probab=33.06  E-value=1.1e+02  Score=19.64  Aligned_cols=16  Identities=13%  Similarity=0.179  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHhh
Q 012330           14 AIALAILVVQIVTKTL   29 (466)
Q Consensus        14 ~~~l~~~~~~~~~~~~   29 (466)
                      +++++|++++..||++
T Consensus        12 ~v~Ivclliya~YrR~   27 (70)
T PHA02902         12 IVIIFCLLIYAAYKRY   27 (70)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            3333344444444443


No 46 
>PHA03049 IMV membrane protein; Provisional
Probab=31.67  E-value=79  Score=20.44  Aligned_cols=13  Identities=15%  Similarity=0.174  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q 012330           14 AIALAILVVQIVT   26 (466)
Q Consensus        14 ~~~l~~~~~~~~~   26 (466)
                      +++++.++++-++
T Consensus        11 CVaIi~lIvYgiY   23 (68)
T PHA03049         11 CVVIIGLIVYGIY   23 (68)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333


No 47 
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=31.39  E-value=23  Score=21.81  Aligned_cols=11  Identities=18%  Similarity=0.051  Sum_probs=9.4

Q ss_pred             ccCCCCccccc
Q 012330          442 TAFQVSTVSRL  452 (466)
Q Consensus       442 ~~Fg~G~~~C~  452 (466)
                      -+||-|.|.|-
T Consensus        12 ~kfg~GsrsC~   22 (56)
T KOG3506|consen   12 RKFGQGSRSCR   22 (56)
T ss_pred             cccCCCCccee
Confidence            47999999985


No 48 
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=30.99  E-value=25  Score=29.83  Aligned_cols=55  Identities=24%  Similarity=0.400  Sum_probs=31.6

Q ss_pred             cChhHHHHHHhHhccCCCCCCCccccc------ccccCCCCeeecCCCEEEEeecccccCCCCccCCCC----CcCCCc
Q 012330          357 KMHYLHAAITETLRLYPAVPVDAKMCF------SDDTLPDGFSVRKGDMVCYQAYAMGRMKFIWGDDAE----EFKPER  425 (466)
Q Consensus       357 ~lp~l~a~i~E~lRl~~~~~~~~r~~~------~~~~~~~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~----~F~P~R  425 (466)
                      ...|++|+++ +    ...|.+.+...      .-...++|..++-|..|         ||..||++|.    .|+|+|
T Consensus        28 ~~~yv~ai~~-a----Gg~pillP~~~d~~~~~~~l~~iDgliltGg~nV---------~P~~YGee~~~~~~~~~p~R   92 (243)
T COG2071          28 PYDYVDAIIK-A----GGIPILLPALEDPEDARQYLDLIDGLILTGGSNV---------DPSLYGEEPSEKDGPYDPER   92 (243)
T ss_pred             HHHHHHHHHH-c----CCceEEecCCCCHHHHHHHHhhccEEEecCCCcC---------CHHHcCCCCCcccCCCCccc
Confidence            3457888777 2    34444444111      11123467777666555         7788887664    478888


No 49 
>PF07886 BA14K:  BA14K-like protein;  InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process []. 
Probab=30.54  E-value=35  Score=18.36  Aligned_cols=16  Identities=0%  Similarity=-0.097  Sum_probs=13.0

Q ss_pred             CCCccccCCCCccccc
Q 012330          437 SPFKFTAFQVSTVSRL  452 (466)
Q Consensus       437 ~~~~~~~Fg~G~~~C~  452 (466)
                      ...+|+|+.+..|.|.
T Consensus        16 ~~~Ty~~~~G~r~~C~   31 (31)
T PF07886_consen   16 RDNTYQPYDGPRRFCR   31 (31)
T ss_pred             CCCcEeCCCCccccCc
Confidence            3567999999989885


No 50 
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=30.49  E-value=1.3e+02  Score=21.00  Aligned_cols=17  Identities=24%  Similarity=0.388  Sum_probs=14.7

Q ss_pred             hHHHHHHHHHHHHHhCC
Q 012330          321 PAVQEKIVQEVKEATGA  337 (466)
Q Consensus       321 p~~~~~l~~Ei~~~~~~  337 (466)
                      |++.+.+|+||-.|+..
T Consensus        36 pd~l~~Lr~eIl~VI~K   52 (88)
T COG0851          36 PDYLEQLRKEILEVISK   52 (88)
T ss_pred             cchHHHHHHHHHHHHHH
Confidence            88999999999988754


No 51 
>PF05084 GRA6:  Granule antigen protein (GRA6);  InterPro: IPR008119  Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage [].  The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=29.08  E-value=1.2e+02  Score=23.66  Aligned_cols=11  Identities=9%  Similarity=0.006  Sum_probs=6.6

Q ss_pred             hcccCCCCCCC
Q 012330           30 TQKSGNKQKKY   40 (466)
Q Consensus        30 ~~~~~~pgp~~   40 (466)
                      ..++.||-|.+
T Consensus       174 ~~rrsppepsg  184 (215)
T PF05084_consen  174 TGRRSPPEPSG  184 (215)
T ss_pred             hccCCCCCCCC
Confidence            44567776653


No 52 
>PF02468 PsbN:  Photosystem II reaction centre N protein (psbN);  InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection [].   This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=26.98  E-value=1.3e+02  Score=17.73  Aligned_cols=20  Identities=10%  Similarity=0.114  Sum_probs=7.9

Q ss_pred             CCCCCchHHHHHHHHHHHHHH
Q 012330            1 MDFLSIPFSFKALAIALAILV   21 (466)
Q Consensus         1 m~~~~~~~~~~~~~~~l~~~~   21 (466)
                      |+ .++.+++.+.++++.+..
T Consensus         1 Me-~a~~~~i~i~~~lv~~Tg   20 (43)
T PF02468_consen    1 ME-TATVLAIFISCLLVSITG   20 (43)
T ss_pred             CC-ceeeHHHHHHHHHHHHHh
Confidence            44 333444444343333333


No 53 
>PHA01346 hypothetical protein
Probab=26.49  E-value=60  Score=18.59  Aligned_cols=19  Identities=32%  Similarity=0.365  Sum_probs=14.5

Q ss_pred             hcChH-HHHHHHHHHHHHhC
Q 012330          318 CKHPA-VQEKIVQEVKEATG  336 (466)
Q Consensus       318 ~~~p~-~~~~l~~Ei~~~~~  336 (466)
                      .++|+ -|+|+.+|+++.+.
T Consensus        27 vsdpdfsqekihaeldsllr   46 (53)
T PHA01346         27 VSDPDFSQEKIHAELDSLLR   46 (53)
T ss_pred             cCCCCccHHHHHHHHHHHHH
Confidence            34677 58999999988764


No 54 
>PF13260 DUF4051:  Protein of unknown function (DUF4051)
Probab=25.06  E-value=1.6e+02  Score=17.53  Aligned_cols=22  Identities=9%  Similarity=0.185  Sum_probs=10.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHH
Q 012330            6 IPFSFKALAIALAILVVQIVTK   27 (466)
Q Consensus         6 ~~~~~~~~~~~l~~~~~~~~~~   27 (466)
                      +.|.|+++.+++++..+.-+.|
T Consensus         3 iawywivli~lv~~gy~~hmkr   24 (54)
T PF13260_consen    3 IAWYWIVLIVLVVVGYFCHMKR   24 (54)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3556665555554444444443


No 55 
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=24.93  E-value=1.4e+02  Score=22.39  Aligned_cols=23  Identities=13%  Similarity=0.086  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHhhhcccCCC
Q 012330           14 AIALAILVVQIVTKTLTQKSGNK   36 (466)
Q Consensus        14 ~~~l~~~~~~~~~~~~~~~~~~p   36 (466)
                      +++|++++-+..|.+......||
T Consensus        12 ~~ill~viglv~y~~l~~~~~pp   34 (122)
T TIGR02588        12 TLILAAMFGLVAYDWLRYSNKAA   34 (122)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCC
Confidence            33333444444444444444444


No 56 
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=23.63  E-value=1.4e+02  Score=17.60  Aligned_cols=32  Identities=9%  Similarity=0.198  Sum_probs=20.3

Q ss_pred             hHHHHHHHHHHHHHhCCCCcchhhhhcCCCCHHHhhcCh---hHHHHHHh
Q 012330          321 PAVQEKIVQEVKEATGAKDISDFLKVAGCISEEALEKMH---YLHAAITE  367 (466)
Q Consensus       321 p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~~~~~l~~lp---~l~a~i~E  367 (466)
                      +..|+-+|..|.+..               +.+.++++|   -|...++|
T Consensus         4 ~SLQ~LCR~~I~~~t---------------~~~~I~~LPLP~~Lk~yLke   38 (43)
T cd03742           4 LSLQDLCCRAIVSCT---------------PVYLIDKLPLPVSIKSHLKS   38 (43)
T ss_pred             ccHHHHHHHHHHHhC---------------CcchhhhCCCCHHHHHHHHh
Confidence            557888888887664               345555665   35555555


No 57 
>PF13625 Helicase_C_3:  Helicase conserved C-terminal domain
Probab=23.39  E-value=1.8e+02  Score=21.96  Aligned_cols=40  Identities=20%  Similarity=0.245  Sum_probs=31.2

Q ss_pred             hHHHHHHHHHhhcCceEEecCCcceEEecChhhHHHhhhcC
Q 012330           56 RLHHYMTDLAAKHGTYRLLGPFRSEVYSSDPANVEYMLKTN   96 (466)
Q Consensus        56 ~~~~~~~~~~~~yg~~~~~~~~~~~vvv~~~~~i~~il~~~   96 (466)
                      +....+.+|.++||-+++.- +...+...|++.++++...+
T Consensus        75 ~v~~~i~~w~~~~g~v~l~~-~~~~l~~~d~~~l~~l~~~~  114 (129)
T PF13625_consen   75 NVEQSIEDWARRYGRVRLYK-GAYLLECDDPELLDELLADP  114 (129)
T ss_pred             HHHHHHHHHHHhcCCEEEec-CeEEEEECCHHHHHHHHhCh
Confidence            35688899999999776643 45677788999999998753


No 58 
>PF12508 DUF3714:  Protein of unknown function (DUF3714) ;  InterPro: IPR022187  Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. 
Probab=23.21  E-value=56  Score=27.07  Aligned_cols=42  Identities=14%  Similarity=0.245  Sum_probs=27.1

Q ss_pred             ChhHHHHHHhHhccCCCCCCCccc-ccccccCCCCeeecCCCEEEE
Q 012330          358 MHYLHAAITETLRLYPAVPVDAKM-CFSDDTLPDGFSVRKGDMVCY  402 (466)
Q Consensus       358 lp~l~a~i~E~lRl~~~~~~~~r~-~~~~~~~~~g~~ip~G~~v~~  402 (466)
                      -..+.|||.|+.-+..-.  ..|- ..++..+ +|..|||||.|+-
T Consensus        52 ~n~I~A~V~~~qtv~~Gs--~vrlRLle~i~i-~g~~IPkgt~l~G   94 (200)
T PF12508_consen   52 KNTIRAVVDGTQTVVDGS--RVRLRLLEDIQI-GGILIPKGTYLYG   94 (200)
T ss_pred             CCeEEEEEecceEEeCCC--EEEEEEcCceEE-CCEEeCCCCEEEE
Confidence            446778888887664222  2232 3345444 9999999988754


No 59 
>PF13993 YccJ:  YccJ-like protein
Probab=22.58  E-value=1.3e+02  Score=19.01  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=23.6

Q ss_pred             HhhhhhHHHHHHHHHHHHhcChH-HHHHHHHH
Q 012330          300 IAGKDTTAATLSWFIYMLCKHPA-VQEKIVQE  330 (466)
Q Consensus       300 ~ag~~tt~~~l~~~l~~l~~~p~-~~~~l~~E  330 (466)
                      ||..-.||.-++-++++|+.+.+ +.+++-+|
T Consensus         8 WA~~ReTS~EIAeAIFElA~~dE~lAekIWee   39 (69)
T PF13993_consen    8 WANVRETSIEIAEAIFELANNDEVLAEKIWEE   39 (69)
T ss_pred             HHHHhcCCHHHHHHHHHHhcccHHHHHHHHHc
Confidence            56667788889999999999876 45566554


No 60 
>PF08780 NTase_sub_bind:  Nucleotidyltransferase substrate binding protein like;  InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=22.20  E-value=3.5e+02  Score=20.39  Aligned_cols=39  Identities=21%  Similarity=0.600  Sum_probs=22.1

Q ss_pred             HHHHHhhccCceeecCCcchHH---HHhhhhhcCCHHHHHHHH
Q 012330          107 YSILKDLLGDGIFTVDGEKWRE---QRKISSHEFSTKVLRDFS  146 (466)
Q Consensus       107 ~~~~~~~~~~~l~~~~g~~w~~---~R~~l~~~~s~~~l~~~~  146 (466)
                      .+.++..+..|++ .+++.|..   .|...++...........
T Consensus        63 r~~~r~A~~~glI-~d~e~Wl~m~~~RN~tsHtYde~~a~~i~  104 (124)
T PF08780_consen   63 RDVFREAFKAGLI-DDGEIWLDMLEDRNLTSHTYDEETAEEIY  104 (124)
T ss_dssp             HHHHHHHHHTTSS-SHHHHHHHHHHHHHHGGGTTSHHHHHHHH
T ss_pred             HHHHHHHHHcCCC-CCHHHHHHHHHHhccccCCCCHHHHHHHH
Confidence            3344444455666 77788865   455565656665544433


No 61 
>PF11227 DUF3025:  Protein of unknown function (DUF3025);  InterPro: IPR021390  Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function. 
Probab=22.08  E-value=53  Score=27.30  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=18.4

Q ss_pred             ecccccCCCCccCCCCCcCCCc
Q 012330          404 AYAMGRMKFIWGDDAEEFKPER  425 (466)
Q Consensus       404 ~~~~~~d~~~~g~~p~~F~P~R  425 (466)
                      .+.-|.|+.+| .|...|+|-|
T Consensus       191 W~~~n~~~~FY-~d~~~FRp~R  211 (212)
T PF11227_consen  191 WWPDNEDPAFY-DDTDVFRPGR  211 (212)
T ss_pred             CCCCCCCcccc-cCccccCCCC
Confidence            45569999999 9999999987


No 62 
>PF02202 Tachykinin:  Tachykinin family;  InterPro: IPR002040 This family includes peptides, which belong to the tachykinin family. Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.; GO: 0007217 tachykinin receptor signaling pathway, 0007268 synaptic transmission; PDB: 1MYU_A 1N6T_A 2GFR_A.
Probab=21.78  E-value=11  Score=14.78  Aligned_cols=6  Identities=17%  Similarity=0.639  Sum_probs=2.5

Q ss_pred             CCCCCc
Q 012330          416 DDAEEF  421 (466)
Q Consensus       416 ~~p~~F  421 (466)
                      |+|++|
T Consensus         2 p~pd~F    7 (11)
T PF02202_consen    2 PKPDQF    7 (11)
T ss_dssp             -CHHHH
T ss_pred             CCcccc
Confidence            345544


No 63 
>PF07095 IgaA:  Intracellular growth attenuator protein IgaA;  InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=21.64  E-value=1.6e+02  Score=29.41  Aligned_cols=38  Identities=21%  Similarity=0.166  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcch
Q 012330            9 SFKALAIALAILVVQIVTKTLTQKSGNKQKKYHPIGGT   46 (466)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~~~~~~~pgp~~~p~~G~   46 (466)
                      .++++++++++++..-.+.+++.++.++.++..|+.+.
T Consensus         4 ~~iilail~~~li~~~~~~~~r~~r~~~~~~~~~~~~~   41 (705)
T PF07095_consen    4 IVIILAILLACLIIAGSFLWFRMRRRPPLRKLPPFAKP   41 (705)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCC
Confidence            34444555555544444444444556666666666654


No 64 
>PF14483 Cut8_M:  Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=21.61  E-value=1.4e+02  Score=17.03  Aligned_cols=18  Identities=33%  Similarity=0.761  Sum_probs=11.5

Q ss_pred             HHHHHHh-cChHHHHHHHH
Q 012330          312 WFIYMLC-KHPAVQEKIVQ  329 (466)
Q Consensus       312 ~~l~~l~-~~p~~~~~l~~  329 (466)
                      .++..+. .||++++.+++
T Consensus        17 ~lL~~l~~~HPei~~~i~~   35 (38)
T PF14483_consen   17 SLLQSLCERHPEIQQEIRS   35 (38)
T ss_dssp             HHHHHHHHHSTHHHHHHHT
T ss_pred             HHHHHHHHhChhHHHHHHh
Confidence            3344444 69998888764


No 65 
>PF14824 Sirohm_synth_M:  Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=21.03  E-value=1.4e+02  Score=15.99  Aligned_cols=15  Identities=20%  Similarity=0.386  Sum_probs=11.2

Q ss_pred             ChHHHHHHHHHHHHH
Q 012330          320 HPAVQEKIVQEVKEA  334 (466)
Q Consensus       320 ~p~~~~~l~~Ei~~~  334 (466)
                      .|..-.++|+||+..
T Consensus        15 sP~la~~iR~~ie~~   29 (30)
T PF14824_consen   15 SPRLARLIRKEIERL   29 (30)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHh
Confidence            477888888888764


No 66 
>PF07849 DUF1641:  Protein of unknown function (DUF1641);  InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long. 
Probab=20.36  E-value=1.3e+02  Score=17.53  Aligned_cols=18  Identities=17%  Similarity=0.187  Sum_probs=14.1

Q ss_pred             HHHHHHHhcChHHHHHHH
Q 012330          311 SWFIYMLCKHPAVQEKIV  328 (466)
Q Consensus       311 ~~~l~~l~~~p~~~~~l~  328 (466)
                      .|-+..++++||+|..|.
T Consensus        13 l~gl~~~l~DpdvqrgL~   30 (42)
T PF07849_consen   13 LFGLLRALRDPDVQRGLG   30 (42)
T ss_pred             HHHHHHHHcCHHHHHHHH
Confidence            456777889999988875


Done!