BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012331
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
pdb|3NVA|B Chain B, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
Length = 535
Score = 377 bits (967), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/439 (44%), Positives = 280/439 (63%), Gaps = 23/439 (5%)
Query: 20 ASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMD 79
+SIG+LLK G VT +KIDPY+N DAGTM+P+ H +YERFMD
Sbjct: 22 VASIGMLLKRRGYNVTAVKIDPYINVDAGTMNPYMHGEVFVTEDGAETDLDLGHYERFMD 81
Query: 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGP 139
+ +T+ NNIT GK+Y VI KER+G YLG+TVQ++PH+TD+I+D MI K
Sbjct: 82 VNMTKYNNITAGKVYFEVIKKEREGKYLGQTVQIIPHVTDQIKD------MIRYASKINN 135
Query: 140 VDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQH 199
++ ++E+GGT+GDIES+PF+EA+ Q G N +H++LV L+V GE KTKP QH
Sbjct: 136 AEITLVEIGGTVGDIESLPFLEAVRQLKLEEGEDNVIFVHIALVEYLSVTGELKTKPLQH 195
Query: 200 SVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRD 259
SV+ LR G+ P+ + R+T+ LDD + K++ F +V +I++ YDV + +P++L
Sbjct: 196 SVQELRRIGIQPDFIVGRATLPLDDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILES 255
Query: 260 QKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLH--EPVRIAMVGKYTGLSDAYLSIL 317
QK I L L+ ++ L +W S G++ + + IA+VGKYT L D+Y+SI
Sbjct: 256 QKLVSKILSRLKLE--DRQVDLTDWISFVNNIKGINSKKTINIALVGKYTKLKDSYISIK 313
Query: 318 KALLHAS--VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375
+A+ HAS + +R KL+ WI + DLE T+ N ++L +GI+V GFG+R
Sbjct: 314 EAIYHASAYIGVRPKLI--WIESTDLESDTKNLN--------EILGNVNGIIVLPGFGSR 363
Query: 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFM 435
G +GKI A KYAREH IP+LGIC G Q++++EFAR VL L +ANSTE +PNTK+P + +
Sbjct: 364 GAEGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLL 423
Query: 436 PEGSK-THMGGTMRLGSRR 453
E T +GGTMRLG+++
Sbjct: 424 DEQKNVTQLGGTMRLGAQK 442
>pdb|1VCO|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase Complex With
Glutamine
Length = 550
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/431 (46%), Positives = 279/431 (64%), Gaps = 19/431 (4%)
Query: 21 SSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMDI 80
SS+G LL+A G RVT IKIDPY+N DAGTM P+EH +YERF+D+
Sbjct: 32 SSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLDM 91
Query: 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPV 140
L+R NN+TTG++Y SVI KER+G+YL +TVQV+PHITDEI++ I +VA +E
Sbjct: 92 DLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVA------EEQKA 145
Query: 141 DVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHS 200
++ V+E+GGT+GDIES+PF+EA+ QF + G GN +H++LVP L E KTKPTQHS
Sbjct: 146 EIVVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHS 205
Query: 201 VRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQ 260
V LRG G+ P+IL RS + + V+ K++ F +V ++ + V +++ +PLLL +Q
Sbjct: 206 VATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQ 265
Query: 261 KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320
A+ + L L+ P L W + V+IA+ GKY + DAYLS+L+AL
Sbjct: 266 GLGRAVERALGLEAVI--PNLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEAL 323
Query: 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGK 380
HA + R ++ + W+ A LE A +E + GILVPGGFG RG++GK
Sbjct: 324 RHAGIKNRARVEVKWVDAESLEAADLEEA----------FRDVSGILVPGGFGVRGIEGK 373
Query: 381 ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSK 440
+ AA+YARE +IPYLGICLG+Q+AVIEFAR+V L+ ANSTEFDP+T +P + MPE +
Sbjct: 374 VRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLE 433
Query: 441 TH-MGGTMRLG 450
+GGTMRLG
Sbjct: 434 VEGLGGTMRLG 444
>pdb|1VCM|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase
pdb|1VCN|A Chain A, Crystal Structure Of T.th. Hb8 Ctp Synthetase Complex With
Sulfate Anion
Length = 550
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/431 (46%), Positives = 278/431 (64%), Gaps = 19/431 (4%)
Query: 21 SSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMDI 80
SS+G LL+A G RVT IKIDPY+N DAGTM P+EH +YERF+D+
Sbjct: 32 SSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLDM 91
Query: 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPV 140
L+R NN+TTG++Y SVI KER+G+YL +TVQV+PHITDEI++ I +VA +E
Sbjct: 92 DLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVA------EEQKA 145
Query: 141 DVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHS 200
++ V+E+GGT+GDIES+PF+EA+ QF + G GN +H++LVP L E KTKPTQHS
Sbjct: 146 EIVVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHS 205
Query: 201 VRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQ 260
V LRG G+ P+IL RS + + V+ K++ F +V ++ + V +++ +PLLL +Q
Sbjct: 206 VATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQ 265
Query: 261 KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320
A+ + L L+ P L W + V+IA+ GKY + DAYLS+L+AL
Sbjct: 266 GLGRAVERALGLEAVI--PNLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEAL 323
Query: 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGK 380
HA + R ++ + W+ A LE A E + GILVPGGFG RG++GK
Sbjct: 324 RHAGIKNRARVEVKWVDAESLEAADLDEA----------FRDVSGILVPGGFGVRGIEGK 373
Query: 381 ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSK 440
+ AA+YARE +IPYLGICLG+Q+AVIEFAR+V L+ ANSTEFDP+T +P + MPE +
Sbjct: 374 VRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLE 433
Query: 441 TH-MGGTMRLG 450
+GGTMRLG
Sbjct: 434 VEGLGGTMRLG 444
>pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase
pdb|1S1M|B Chain B, Crystal Structure Of E. Coli Ctp Synthetase
pdb|2AD5|A Chain A, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution.
pdb|2AD5|B Chain B, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution
Length = 545
Score = 352 bits (903), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 198/435 (45%), Positives = 271/435 (62%), Gaps = 34/435 (7%)
Query: 31 GLRVTCIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMDIKLTRDNNITT 90
GL VT +K+DPY+N D GTMSP +H +YERF+ K++R NN TT
Sbjct: 33 GLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTT 92
Query: 91 GKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGT 150
G+IY V+ KER+GDYLG TVQV+PHIT+ I+ ERV ++G EG DV ++E+GGT
Sbjct: 93 GRIYSDVLRKERRGDYLGATVQVIPHITNAIK---ERV----LEGGEGH-DVVLVEIGGT 144
Query: 151 IGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLT 210
+GDIES+PF+EA+ Q + +G + +H++LVP + GE KTKPTQHSV+ L G+
Sbjct: 145 VGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQ 204
Query: 211 PNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVL 270
P+IL CRS A+ N + K++ FC+VPE+ +I+L DV +I+ IP LL+ Q + I K
Sbjct: 205 PDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRF 264
Query: 271 NLQGTTKEPLLKEWTSRA-EICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 329
+L E L EW E + + E V I MVGKY L DAY S+++AL H + R
Sbjct: 265 SL--NCPEANLSEWEQVIFEEANPVSE-VTIGMVGKYIELPDAYKSVIEALKHGGLKNRV 321
Query: 330 KLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYARE 389
+ I I + D+E ++LKG D ILVPGGFG RGV+G I A++ARE
Sbjct: 322 SVNIKLIDSQDVE-----------TRGVEILKGLDAILVPGGFGYRGVEGMITTARFARE 370
Query: 390 HRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPE-----------G 438
+ IPYLGICLGMQVA+I++AR V N+ +ANSTEF P+ K P V + E
Sbjct: 371 NNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRS 430
Query: 439 SKTHMGGTMRLGSRR 453
K+ +GGTMRLG+++
Sbjct: 431 EKSDLGGTMRLGAQQ 445
>pdb|2VO1|A Chain A, Crystal Structure Of The Synthetase Domain Of Human Ctp
Synthetase
pdb|2VO1|B Chain B, Crystal Structure Of The Synthetase Domain Of Human Ctp
Synthetase
Length = 295
Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 150/253 (59%), Positives = 186/253 (73%)
Query: 20 ASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMD 79
ASS+G +LK+CGL VT IKIDPY+N DAGT SP+EH NYERF+D
Sbjct: 42 ASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFLD 101
Query: 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGP 139
I+LT+DNN+TTGKIYQ VI+KERKGDYLGKTVQVVPHITD IQ+W+ R A+IPVD
Sbjct: 102 IRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLE 161
Query: 140 VDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQH 199
VCVIELGGT+GDIESMPFIEA QF ++V NFC IHVSLVP + GEQKTKPTQ+
Sbjct: 162 PQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQN 221
Query: 200 SVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRD 259
SVR LRG GL+P+++ CR + LD +VK K+S FCHV + +I ++DV +I+ +PLLL +
Sbjct: 222 SVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEE 281
Query: 260 QKAHEAIFKVLNL 272
Q + + L+L
Sbjct: 282 QGVVDYFLRRLDL 294
>pdb|3IHL|A Chain A, Human Ctps2 Crystal Structure
pdb|3IHL|B Chain B, Human Ctps2 Crystal Structure
Length = 282
Score = 302 bits (773), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 142/241 (58%), Positives = 178/241 (73%)
Query: 20 ASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMD 79
ASSIG +LK+CGLRVT IKIDPY+N DAGT SP+EH NYERF+D
Sbjct: 20 ASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDGGEVDLDLGNYERFLD 79
Query: 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGP 139
I L +DNNITTGKIYQ VI+KER+GDYLGKTVQVVPHITD +Q+W+ A +PVDG +
Sbjct: 80 INLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAVQEWVMNQAKVPVDGNKEE 139
Query: 140 VDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQH 199
+CVIELGGTIGDIE MPF+EA QF ++ NFC IHVSLVP L+ GEQKTKPTQ+
Sbjct: 140 PQICVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHVSLVPQLSATGEQKTKPTQN 199
Query: 200 SVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRD 259
SVR LRG GL+P+++ CRS+ ++ VK K+S FCHV + +I ++DV + + +P+LL +
Sbjct: 200 SVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQVICIHDVSSTYRVPVLLEE 259
Query: 260 Q 260
Q
Sbjct: 260 Q 260
>pdb|2VKT|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain
Length = 289
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/167 (55%), Positives = 119/167 (71%)
Query: 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359
IA+VGKYT L D Y S+ KAL H+++ + KL + +I + DLE TE E+P + AW+
Sbjct: 28 IALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQK 87
Query: 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419
L ADGILVPGGFG RG GK+ A +AR +IP+LG+CLGMQ+AVIEFAR+ LNL+DA+
Sbjct: 88 LCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVCLGMQLAVIEFARNCLNLKDAD 147
Query: 420 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKL 466
STEF PN P VI MPE + ++GGTMRLG RRT F+ ++ KL
Sbjct: 148 STEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKL 194
>pdb|2V4U|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain In Complex
With 5-Oxo-L-Norleucine
Length = 289
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 118/167 (70%)
Query: 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359
IA+VGKYT L D Y S+ KAL H+++ + KL + +I + DLE TE E+P + AW+
Sbjct: 28 IALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQK 87
Query: 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419
L ADGILVPGGFG RG GK+ A +AR +IP+LG+ LGMQ+AVIEFAR+ LNL+DA+
Sbjct: 88 LCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDAD 147
Query: 420 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKL 466
STEF PN P VI MPE + ++GGTMRLG RRT F+ ++ KL
Sbjct: 148 STEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKL 194
>pdb|2W7T|A Chain A, Trypanosoma Brucei Ctps - Glutaminase Domain With Bound
Acivicin
Length = 273
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 98/170 (57%), Gaps = 9/170 (5%)
Query: 298 VRIAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAA 356
VRIA VGKY D Y S+L+ H + L+ +L I ++ D+ E E P+A A
Sbjct: 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYV------DSEELEGPNA-DEA 61
Query: 357 WKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416
K L G DGI VPGGFGNRGV GK AA+ AR + IPY G+ LGMQVAVIE +R+V+
Sbjct: 62 RKALLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWS 121
Query: 417 DANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKL 466
DANS EF+ + + V M + + MG M LG+ Y K AK+
Sbjct: 122 DANSEEFNKESTHQVVRIM-DCDRNKMGANMHLGACDVYIVEKSSIMAKI 170
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 360 LKGADGILVPGGFGNRGVQGKILAA--KYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416
L G DG+++ GG N + L + KY +H P LGIC+G Q + F SV+ +
Sbjct: 52 LDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAK 110
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 365 GILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEF 423
GI++ GG + + A +Y E +P G+C GMQ ++ V +N EF
Sbjct: 53 GIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHV---EASNEREF 108
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 14/97 (14%)
Query: 339 CDLEDATEKE-NPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397
CD+++ T ++ NP GI++ GG + + A + E P LGI
Sbjct: 42 CDIDEETIRDFNPH-------------GIILSGGPETVTLSHTLRAPAFIFEIGCPVLGI 88
Query: 398 CLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIF 434
C GMQ + V A NP +F
Sbjct: 89 CYGMQTMAYQLGGKVNRTAKAEFGHAQLRVLNPAFLF 125
>pdb|3B8B|A Chain A, Crystal Structure Of Cysq From Bacteroides
Thetaiotaomicron, A Bacterial Member Of The Inositol
Monophosphatase Family
Length = 292
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 254 PLLLRDQKAHEAIFKVLNLQGTTKEPLLKE 283
PL + D+KAHEAI +LN T P+L E
Sbjct: 59 PLTIADRKAHEAIVAILN---ETPFPVLSE 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,471,109
Number of Sequences: 62578
Number of extensions: 571387
Number of successful extensions: 1457
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1424
Number of HSP's gapped (non-prelim): 14
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)